AT2G42160 protein (Arabidopsis thaliana)

STRING 9.05

AT2G42160 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT2G42160	zinc finger (ubiquitin-hydrolase) domain-containing protein; zinc finger (ubiquitin-hydrolase) domain-containing protein; FUNCTIONS IN- protein binding, catalytic activity, zinc ion binding; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- BRCA1-associated 2 (InterPro-IPR011422), Zinc finger, UBP-type (InterPro-IPR001607), Zinc finger, RING-type (InterPro-IPR001841); BEST Arabidopsis thaliana protein match is- zinc finger (C3HC4-type RING finger) family protein (TAIR-AT2G26000.2); Has 920 Blast hits to 905 proteins in 150 species- Archa [...] (488 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G26000	zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (479 aa)		•	•	•	0.880
	AT3G45555	zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (213 aa)			•		0.718
	AT5G37270	zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (208 aa)			•		0.716
	AT2G34000	zinc finger protein-related; zinc finger protein-related; FUNCTIONS IN- protein binding, zinc i [...] (151 aa)			•		0.716
	AT1G50440	zinc finger (C3HC4-type RING finger) family protein; zinc finger (C3HC4-type RING finger) famil [...] (250 aa)			•		0.716
	UBC30	UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase; ubiquitin-conjugating enzyme [...] (148 aa)	•				0.548
	AT5G47600	heat shock protein-related; heat shock protein-related; FUNCTIONS IN- molecular_function unknow [...] (131 aa)	•				0.548
	CYP705A18	CYP705A18; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; m [...] (386 aa)	•				0.548
	HDG3	HDG3 (HOMEODOMAIN GLABROUS 3); DNA binding / transcription factor; Encodes a homeobox-leucine z [...] (725 aa)	•				0.548
	BAS1	BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding / steroid hydroxylase; Encodes a mem [...] (520 aa)	•				0.548

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: very high (>100%)

Permalink