BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018432
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 178/309 (57%), Gaps = 22/309 (7%)
Query: 37 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96
NP G++HL++ + + RS + V+ VP ++S + ++F D +E++
Sbjct: 131 NPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCVLTVPATMTSHDLMKFVAPFNDVIEQM 190
Query: 97 IFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEI 156
IR D+ ++Y VLIK Q AD FY NG++F+ E +VC ++++ E + +
Sbjct: 191 KIIR-DSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIEDDVCQLVYVERAEVLKSEDG 249
Query: 157 ASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD 216
AS P TELP C +CLER+D +GIL+T+C+HSF C +W +C VCR+C +
Sbjct: 250 ASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPE 309
Query: 217 --ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
E C CG ENLW+CLICG +GCGRY HA +H+++TQH Y++ L ++WDY G
Sbjct: 310 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 369
Query: 275 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRL 334
DNYVHRL SK DGK+V+ +E TC+ K++A+ EY+ L
Sbjct: 370 DNYVHRLVASKTDGKIVQ-------YECEGDTCQ------------EEKIDALQLEYSYL 410
Query: 335 LATQLETQR 343
L +QLE+QR
Sbjct: 411 LTSQLESQR 419
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 237 bits (605), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 178/309 (57%), Gaps = 22/309 (7%)
Query: 37 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96
NP G++HL++ + + RS + ++ VP ++S + ++F + +E++
Sbjct: 132 NPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQM 191
Query: 97 IFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAEI 156
IR D+ ++Y VLIK Q AD FY NG++F+ E +VC ++++ E + +
Sbjct: 192 KIIR-DSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDG 250
Query: 157 ASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQD 216
AS P TELP C +CLER+D +GIL+T+C+HSF C +W +C VCR+C +
Sbjct: 251 ASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPE 310
Query: 217 --ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
E C CG ENLW+CLICG +GCGRY HA +H+++TQH Y++ L ++WDY G
Sbjct: 311 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 370
Query: 275 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRL 334
DNYVHRL SK DGK+V+ +E TC+ K++A+ EY+ L
Sbjct: 371 DNYVHRLVASKTDGKIVQ-------YECEGDTCQ------------EEKIDALQLEYSYL 411
Query: 335 LATQLETQR 343
L +QLE+QR
Sbjct: 412 LTSQLESQR 420
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 207 bits (528), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 174/327 (53%), Gaps = 48/327 (14%)
Query: 45 GLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM 104
G+VHL+R S ++ + ++A+P Y+S + + F G H + + IR
Sbjct: 67 GVVHLYR-VFPSESHEFDAPGLILAILAIPLYMSPSDVLGFLGE--KHCKSIQHIRLLKT 123
Query: 105 ED--RYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTELAE------- 155
+D R L+K DQ + FY+ NGK FS + E CH+L + V E
Sbjct: 124 KDPNRIMALLKFKDQASVIRFYTEFNGKAFSQIDPETCHVLHIDKVNIKYPMESSDSSST 183
Query: 156 -----------IASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVL 204
AST PA ELPTC +CLER+D +G+++ +C H+F C C KW
Sbjct: 184 EQQLVGPSSKPFASTTPA-LIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNS 242
Query: 205 SCQVCRFCHQ---QDERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYS 261
SC VCR+ + + + C+VC ++LW+CLICG +GCGRY + HA +H+ DT H Y+
Sbjct: 243 SCPVCRYTQKVQSSEFQSKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQHYVDTAHCYA 302
Query: 262 LDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFN 321
++L TQ++WDY GDNYVHRL QS+ DGKLVE+ S D SG +
Sbjct: 303 MELETQRVWDYAGDNYVHRLLQSETDGKLVEL----------------STDGKSSGWTGS 346
Query: 322 SKVEAIVD-----EYNRLLATQLETQR 343
S E+ + EY ++L +QLE+QR
Sbjct: 347 SATESKLRDKMGLEYTQILVSQLESQR 373
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 174/333 (52%), Gaps = 22/333 (6%)
Query: 16 TIEEAGFCTVSSTATRSRA--NPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAV 73
T E++G +VS A + NP + G++H ++ + + R C++ AV
Sbjct: 107 TSEKSGGRSVSEGPPDQVAYYSGNPLTEKTEGIMHFYKYNDEKLTKVAQCRMLCMY--AV 164
Query: 74 PNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133
P + E + F + + + +R D ++Y ++IK + A FY N F+
Sbjct: 165 PAQVEVREIISFMCISLPMIVSIKVVR-DPAPNQYMLIIKFKEHNDAVTFYEEFNNCPFN 223
Query: 134 PAEAEVCHMLFMLSVEYTELAEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSF 193
E+ C + F+ +E T ++ S+ TELPTC +CLER+D +L+ +C+HSF
Sbjct: 224 DLESYCCTLFFVDRIECTTSNDLFSSDDTSLTELPTCAVCLERMD---DSVLAILCNHSF 280
Query: 194 QCSCTAKWTVLSCQVCRFCHQQD--ERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVR 251
C +W +C VCR+ + C+ CG +LW+CLICG +GCGRY E HA R
Sbjct: 281 HARCLEQWADNTCPVCRYVQSPEVVAEQRCNDCGMSNDLWICLICGNIGCGRYAEQHAQR 340
Query: 252 HWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSE 311
HW+ T H YSL + +++WDY GDNYVHRL ++ ADGKLVE E++ + ++
Sbjct: 341 HWELTSHTYSLKVGGERVWDYAGDNYVHRLIENGADGKLVEYQ-----RESNASFDDKNQ 395
Query: 312 DSGISGALFNSKVEAIVDEYNRLLATQLETQRQ 344
G K+E I EY LL +QLE QR+
Sbjct: 396 KGG-------DKLEGIKLEYTLLLTSQLEDQRK 421
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 179/359 (49%), Gaps = 62/359 (17%)
Query: 45 GLVHLFRGTSQSYQQNPN------SRSTCIFVVAVPNYLSSDEFVRF-CGSHI--DHVEE 95
G++ LF+ ++ + N T I ++ VP Y + + + F G I V
Sbjct: 86 GIIRLFKLSNANNTLNEKEILTIPGDDTMICILFVPTYFTVHDLLHFYIGDDIVNKQVSN 145
Query: 96 LIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTEL 153
+RN M ++VLIK + L A F NGK FS + E CH++ + + + +
Sbjct: 146 FRILRNQQKGMGFNFTVLIKFRNALDAKNFKEEFNGKSFSRMDPETCHVISVKEIVFQK- 204
Query: 154 AEIASTPPAG----------FTEL----------PTCPICLERLDPDTSGILSTICDHSF 193
++ P A FT PTCP+CLER+D +T+G+++ C H+F
Sbjct: 205 -KLFQRPAANEDFPYLLTDPFTVKKKKELVKVELPTCPVCLERMDSETTGLVTIPCQHTF 263
Query: 194 QCSCTAKWTVLSCQVCR----------FCHQQDERPTCSVCGTVENLWVCLICGFVGCGR 243
C C KW C VCR Q + C+ CG+ +NLW+CLICG VGCGR
Sbjct: 264 HCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLICGNVGCGR 323
Query: 244 YKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEM---------- 293
Y HA++H+++T H +++D+RTQ++WDY GDNYVHRL Q++ DGKLVE+
Sbjct: 324 YNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYVHRLVQNEVDGKLVEVGGSGDDDNND 383
Query: 294 --NSPCMSHEAHCGTCECSEDS------GISGALFNSKVEAIVDEYNRLLATQLETQRQ 344
NS + + + + E S G A F E + EY ++L +QLE+QR+
Sbjct: 384 IGNSDELQNVVYGNRSKNGEKSNSNKKDGELAANFLRHREYHL-EYVQVLISQLESQRE 441
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278
C C T E++W CL C V CGRY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280
C C T E++W CL C V CGRY E HA++H++++ H +L++ ++ Y+ D+YV
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 281 LNQSKADGKLVEMN-SPCMSHEAHCGT 306
N + D KL+ S S HC T
Sbjct: 89 DN-TTGDLKLLRRTLSAIKSQNYHCTT 114
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280
C C T E++W CL C V CGRY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 281 LNQSKADGKLV 291
N + D KL+
Sbjct: 86 DN-TTGDLKLL 95
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278
C C T E++W CL C V CGRY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca
GN=USP44 PE=3 SV=1
Length = 711
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280
C C T E++W CL C V CGRY E HA++H++++ H +L++ ++ Y+ D+YV
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88
Query: 281 LNQSKADGKLVEMNSPCMSHEAHCGT 306
N + L M S S C T
Sbjct: 89 DNATGDLKLLRSMLSAIKSQNYQCTT 114
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280
C C T E++W CL C V CGRY E HA++H+K+ H +L++ ++ Y+ D+YV
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYV-- 83
Query: 281 LNQSKADGKLVEMNSPCMSHEAHC 304
LN + A G L + S + ++ C
Sbjct: 84 LNDN-ATGDLKLLRSTLSAIKSQC 106
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278
C C T E++W CL C V CGRY E HA++H+++T H ++++R ++ Y+ +YV
Sbjct: 26 CLECATTESVWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278
C C T E+ W CL C V CGRY E HA++H+++T H ++++R ++ Y+ +YV
Sbjct: 26 CLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280
C VC T E++W CL C V CG+Y + HA++H++++ H + ++ + Y+ ++YV
Sbjct: 26 CMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYV-- 83
Query: 281 LNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVD 329
LN + A G L + S + ++ C DS + +V +++D
Sbjct: 84 LNDNAA-GDLKSLRSTLSTIKSKKYPCVVPSDSVLHPVDAQDRVYSLLD 131
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279
C C W+C+ CG V C R+ GHA H+++T+H S W Y D YVH
Sbjct: 34 CHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYVH 92
>sp|Q08DA3|UBP16_BOVIN Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16
PE=2 SV=1
Length = 826
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 180 DTSGILSTICDHSF----QCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVEN--LWVC 233
D+S L +C H Q + + +C+ C ++ S T EN +W+C
Sbjct: 15 DSSESLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKSEEETEENPSVWLC 74
Query: 234 LICGFVGCGRY-KEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGK 289
L CG GCGR +E HA++H+ + H L L +W Y+ D+ VH N ++ G+
Sbjct: 75 LKCGHQGCGRNSQEQHALKHYMKPRSEPHCLVLSLDNWSVWCYLCDDEVHYCNSNRL-GQ 133
Query: 290 LVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVE 325
+V+ + +A T E +ED+G + L N K+E
Sbjct: 134 VVDY----VRKQAGNTTPESAEDNG-NIELENKKLE 164
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 217 ERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT 266
+ TCS C ENLW+CL CG + CGR + GHA+ H+ DT H ++ L++
Sbjct: 170 DNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKS 225
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279
C CGT++ WVCL C V CGRY GH ++H ++ H L W Y YVH
Sbjct: 1133 CGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVH 1191
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQ 257
CSVC + ++ WVCL C V CGRY GHA +H++D Q
Sbjct: 29 CSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQ 65
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQ 257
CSVC + ++ WVCL C V CGRY GHA +H++D Q
Sbjct: 29 CSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQ 65
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 216 DERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGD 275
+ R CS C +W CL C CGR+ HA+ H + H +L + +W Y D
Sbjct: 870 NARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCD 929
Query: 276 NYVH 279
+YVH
Sbjct: 930 SYVH 933
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279
C CGTV+ WVCL C V C RY H V H + ++H L W YV YVH
Sbjct: 1067 CKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVH 1125
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
CS C ENLW+ L G + CGR+ GHA+ H K Q Y L +R I
Sbjct: 192 CSKCDLQENLWLNLTDGSIMCGRWFCSGSGGNGHALEHHK--QMGYPLAVRLGSITPDGA 249
Query: 275 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRL 334
D Y ++ D L + H AH G + + G + +++V+ V+E+ +
Sbjct: 250 DVYSFDEEEAVIDPHLAK-------HLAHFG-IDMLQMQGSENGVLDNEVKPRVNEWEVI 301
Query: 335 LATQLETQRQVSTSFPDVKT 354
T L+ + + + +K
Sbjct: 302 QETGLKLKPMFGSGYTGIKN 321
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 215 QDERPTCSVCGTV-ENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWD 271
Q + TC C NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W
Sbjct: 24 QKSQGTCQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC 83
Query: 272 YV 273
Y
Sbjct: 84 YA 85
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 220 TCSVCGTV-ENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 276
TC CG NLW CL C +VGCG H+ H + +H +++L T ++W Y +
Sbjct: 29 TCQSCGVAGPNLWACLQVTCPYVGCGESFADHSSIHAQVKKHNLTVNLTTFRVWCYACER 88
Query: 277 YV---HRL--NQSKADGKLVEMNSPCMSH 300
V RL + + + +L E +SP SH
Sbjct: 89 EVFLEQRLAVHLASSSARLSEQDSPPPSH 117
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 220 TCSVCG-TVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDN 276
TC CG T NLW CL C +VGCG H+ H + +H +++L T ++W Y +
Sbjct: 29 TCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYACEK 88
Query: 277 YVHRLNQSKA-----DGKLVEMNSPCMSH 300
V L Q A K E +SP SH
Sbjct: 89 EVF-LEQRLAAPLLGSSKFSEQDSPPPSH 116
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 221 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 273
C V G NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W Y
Sbjct: 64 CKVQGP--NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 116
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 221 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 273
C V G NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W Y
Sbjct: 33 CKVRGP--NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum
GN=ubpA PE=2 SV=2
Length = 837
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 224 CGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRT-----QQIWDY 272
C VENLW+ L GF+GCGR GHA H+ TQ+ S+ L T ++ Y
Sbjct: 196 CDKVENLWLNLTDGFIGCGRKYADGTGGNGHAQEHFNQTQYPISVKLGTITKDHADVYSY 255
Query: 273 VGDNYV 278
D+ V
Sbjct: 256 PEDDMV 261
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 218 RPTCSVCG-TVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
+ TC CG T NLW CL C +VGCG H+ H + +H +++L T ++W Y
Sbjct: 27 KGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYAC 86
Query: 275 DNYV---HRLNQS--KADGKLVEMNSPCMSH 300
+ V RL + K E +SP SH
Sbjct: 87 EKEVFLEQRLAAPLLGSSSKFSEQDSPPPSH 117
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 221 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 273
C V G NLW CL C +VGCG + H+ H ++T+H+ +++L T ++W Y
Sbjct: 33 CKVRGP--NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 215 QDERPTCSVCGTV-ENLWVCLICG--FVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWD 271
Q + TC CG NLW CL C +VGCG H+ H + +H +++L T ++W
Sbjct: 24 QKSKGTCQSCGVGGPNLWACLQCDCPYVGCGESYSDHSTIHAQAKKHNLTVNLTTFRVWC 83
Query: 272 YV 273
YV
Sbjct: 84 YV 85
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16
PE=1 SV=1
Length = 823
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 180 DTSGILSTICDHSF----QCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVE--NLWVC 233
D+S L +C H Q + + +C+ C ++ + T E ++W+C
Sbjct: 15 DSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLC 74
Query: 234 LICGFVGCGRY-KEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVH 279
L CG GCGR +E HA++H+ + H L L +W YV DN V
Sbjct: 75 LKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQ 124
>sp|A8HAL1|UBP16_DANRE Ubiquitin carboxyl-terminal hydrolase 16 OS=Danio rerio GN=usp16
PE=2 SV=1
Length = 815
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 225 GTVENLWVCLICGFVGCGRYKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVHRL 281
G +W+CL CG GCGR HA++H+ + H L L +W Y+ D+ V
Sbjct: 68 GESPAVWMCLKCGHRGCGRSGNQHAIKHYETPRSEPHCLVLSLDVWSVWCYICDDEV--- 124
Query: 282 NQSKADGKLVEM 293
Q + G+L ++
Sbjct: 125 -QYSSTGQLAQL 135
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYKEG-----HAVRHWKDTQH 258
CS C +NLW+CL CG +GCGR + G HA+ H++ +
Sbjct: 192 CSSCDLTQNLWLCLHCGNIGCGREQIGIDGHSHALDHYRSNNN 234
>sp|Q4R6X7|UBP16_MACFA Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis
GN=USP16 PE=2 SV=2
Length = 826
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 180 DTSGILSTICDHSF----QCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVE--NLWVC 233
D+S L +C H Q + + +C+ C ++ + T E ++W+C
Sbjct: 15 DSSETLEPMCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLC 74
Query: 234 LICGFVGCGRY-KEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVH 279
L CG GCGR +E HA++H+ + H L L +W Y+ DN V
Sbjct: 75 LKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICDNEVQ 124
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 218 RPTCSVCG-TVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
+ TC CG + NLW CL C +VGCG H+ H + +H +++L T ++W Y
Sbjct: 27 KSTCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQAKKHNLTVNLTTFRVWCYAC 86
Query: 275 DNYVH---RL--NQSKADGKLVEMNSPCMSH 300
+ V RL + K E +SP SH
Sbjct: 87 EKEVFLEPRLAAHPPGPAPKFSEQDSPPPSH 117
>sp|Q99LG0|UBP16_MOUSE Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus musculus GN=Usp16
PE=1 SV=1
Length = 825
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 200 KWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGR-YKEGHAVRHW---KD 255
+W + CQ C+ ++ ++P ++W+CL CG GCGR +E HA++H+ +
Sbjct: 44 EWNI--CQDCKTDNKVKDKPEEEAEDP--SVWLCLKCGHQGCGRDSQEQHALKHYTTPRS 99
Query: 256 TQHWYSLDLRTQQIWDYVGDNYV 278
H+ L L +W Y D V
Sbjct: 100 EPHYLVLSLDNWSVWCYKCDEEV 122
>sp|Q8K387|UBP45_MOUSE Ubiquitin carboxyl-terminal hydrolase 45 OS=Mus musculus GN=Usp45
PE=2 SV=1
Length = 813
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 190 DHSFQCSCTAKWTVLSCQVC----RFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRYK 245
+H + + W+V C C RFC Q P ++W+CL CG GCG+
Sbjct: 48 NHVKKAVAESLWSV--CSECLKERRFCDGQPVLPA--------DVWLCLKCGLQGCGKNS 97
Query: 246 EG-HAVRHWKDT---QHWYSLDLRTQQIWDY 272
E H++RH+K + H + L T IW Y
Sbjct: 98 ESQHSLRHFKSSGTESHCVVISLSTWVIWCY 128
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 221 CSVCGTVENLWVCLI--CGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 273
C V G NLW CL C +VGCG H+ H +DT+H +++L T ++W Y
Sbjct: 33 CRVRGP--NLWACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWCYT 85
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 221 CSVCGTVENLWVCL--ICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYV 273
C V G NLW CL C +VGCG H+ H ++T+H +++L T ++W Y
Sbjct: 34 CKVGGP--NLWACLENGCSYVGCGESHADHSTVHSQETRHNLTVNLTTLRVWCYA 86
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
CS C ENLW+ L G + CGR HAV H+K+T + ++ L T
Sbjct: 180 CSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTITADLEAA 239
Query: 275 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCG 305
D Y + + S D L E H AH G
Sbjct: 240 DVYSYPEDDSVLDPLLAE-------HLAHFG 263
>sp|Q70EL2|UBP45_HUMAN Ubiquitin carboxyl-terminal hydrolase 45 OS=Homo sapiens GN=USP45
PE=1 SV=3
Length = 814
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 229 NLWVCLICGFVGCGRYKEG-HAVRHWKDTQ---HWYSLDLRTQQIWDY 272
++W+CL CGF GCG+ E H+++H+K ++ H ++L T IW Y
Sbjct: 81 DIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
>sp|Q0VA64|UBP16_XENTR Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus tropicalis
GN=usp16 PE=2 SV=1
Length = 864
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 200 KWTVLSCQVCRFCHQQDERPTCSVCGTVEN--LWVCLICGFVGCGRYKEG-HAVRHW--- 253
+WTV C+ C ++ S VE+ +W+CL CG GCGR HA+ H+
Sbjct: 41 EWTV-----CQECQADNKEKNNSDDELVEDPSVWLCLKCGHRGCGRNSASQHALNHYNTP 95
Query: 254 KDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVE 292
+ H L + W Y+ DN V N+S G+LV+
Sbjct: 96 RSEPHCLVLSMDMWSAWCYLCDNEVP-YNRSSRLGQLVD 133
>sp|Q2KJ09|UBP16_RAT Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus norvegicus
GN=Usp16 PE=2 SV=2
Length = 826
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 230 LWVCLICGFVGCGR-YKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYV 278
+W+CL CG GCGR +E HA++H+ + H+ L L +W Y D +
Sbjct: 70 VWLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKCDEEI 122
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRTQQIWDYVG 274
C+ C ENLW+ L G V CG++ GHA+ H++DT Y L ++ I
Sbjct: 211 CARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDTG--YPLAVKLGTITPDGA 268
Query: 275 DNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRL 334
D Y + ++ D L + H AH G + G L ++ ++ V E+ +
Sbjct: 269 DVYSFQEEEAVLDPHLAK-------HLAHFG-IDMLHMHGTENGLQDNDIKPRVSEWEVI 320
Query: 335 LATQLETQRQVSTSFPDVKT 354
T + + + +K
Sbjct: 321 QETGTKLKPMYGPGYTGLKN 340
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 221 CSVCGTVENLWVCLICGFVGCGRY------KEGHAVRHWKDTQHWYSLDLRT 266
CS C ENLW+ L G V CG++ GHA+ H+K+T + ++ L T
Sbjct: 206 CSKCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHAMEHYKETGYPLAVKLGT 257
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 32/159 (20%)
Query: 221 CSVCGTVENLWVCLICGFVGCG-RYKEG-----HAVRHWKDTQHWYSLDLRT-----QQI 269
CS C ENLW+ L G + CG RY +G HAV H+++T + ++ L T +
Sbjct: 199 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADV 258
Query: 270 WDYVGDNYV--------------HRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGI 315
+ Y D+ V L K D + E+ + G E ++SG+
Sbjct: 259 YSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELE---IDMNQRIGEWELIQESGV 315
Query: 316 S-GALFNSKVEAIVDEYNRLLATQLETQRQVSTSFPDVK 353
LF I + N + L + QV S PD +
Sbjct: 316 PLKPLFGPGYTGIRNLGN---SCYLNSVVQVLFSIPDFQ 351
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 32/159 (20%)
Query: 221 CSVCGTVENLWVCLICGFVGCG-RYKEG-----HAVRHWKDTQHWYSLDLRT-----QQI 269
CS C ENLW+ L G + CG RY +G HAV H+++T + ++ L T +
Sbjct: 199 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADV 258
Query: 270 WDYVGDNYV--------------HRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGI 315
+ Y D+ V L K D + E+ + G E ++SG+
Sbjct: 259 YSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELE---IDMNQRIGEWELIQESGV 315
Query: 316 S-GALFNSKVEAIVDEYNRLLATQLETQRQVSTSFPDVK 353
LF I + N + L + QV S PD +
Sbjct: 316 PLKPLFGPGYTGIRNLGN---SCYLNSVVQVLFSIPDFQ 351
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 28/120 (23%)
Query: 221 CSVCGTVENLWVCLICGFVGCG-RYKEG-----HAVRHWKDTQHWYSLDLRT-----QQI 269
CS C ENLW+ L G + CG RY +G HAV H+++T + ++ L T +
Sbjct: 199 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADV 258
Query: 270 WDYVGDNYV--------------HRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGI 315
+ Y D+ V L K D + E+ + G E ++SG+
Sbjct: 259 YSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELE---IDMNQRIGEWELIQESGV 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,610,140
Number of Sequences: 539616
Number of extensions: 5614512
Number of successful extensions: 13388
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 13303
Number of HSP's gapped (non-prelim): 209
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)