Query 018432
Match_columns 356
No_of_seqs 293 out of 1394
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g45_A Ubiquitin carboxyl-term 99.9 1.4E-24 4.9E-29 186.1 7.4 84 196-279 2-106 (129)
2 2i50_A Ubiquitin carboxyl-term 99.9 7.1E-25 2.4E-29 187.4 4.6 107 185-293 3-120 (126)
3 3c5k_A HD6, histone deacetylas 99.9 4.9E-22 1.7E-26 165.9 7.8 63 218-280 24-86 (109)
4 2uzg_A Ubiquitin carboxyl-term 99.8 6.5E-21 2.2E-25 155.9 6.6 62 217-278 24-88 (97)
5 2ida_A Hypothetical protein; z 99.8 1.4E-20 4.9E-25 155.0 7.1 65 216-280 16-87 (102)
6 3ihp_A Ubiquitin carboxyl-term 99.8 4.2E-21 1.4E-25 207.7 4.0 129 163-295 154-317 (854)
7 3mhs_A Ubiquitin carboxyl-term 99.5 3.2E-14 1.1E-18 142.9 6.2 60 218-279 48-109 (476)
8 1iym_A EL5; ring-H2 finger, ub 98.8 2.4E-09 8.3E-14 76.5 3.9 47 165-212 3-52 (55)
9 2ecm_A Ring finger and CHY zin 98.8 2.5E-09 8.6E-14 76.3 3.7 49 165-213 3-53 (55)
10 4ap4_A E3 ubiquitin ligase RNF 98.8 1.8E-09 6.3E-14 89.5 2.6 78 165-242 5-103 (133)
11 1x4j_A Ring finger protein 38; 98.8 2.6E-09 9.1E-14 81.4 3.1 49 164-213 20-70 (75)
12 2ecl_A Ring-box protein 2; RNF 98.8 2.9E-09 9.8E-14 83.1 3.1 49 165-213 13-74 (81)
13 2ect_A Ring finger protein 126 98.7 1.1E-08 3.6E-13 78.4 5.2 52 162-214 10-63 (78)
14 2ep4_A Ring finger protein 24; 98.7 1.2E-08 4.2E-13 77.3 5.1 51 163-214 11-63 (74)
15 2kiz_A E3 ubiquitin-protein li 98.7 9.9E-09 3.4E-13 76.7 4.3 49 164-213 11-61 (69)
16 2l0b_A E3 ubiquitin-protein li 98.7 5.4E-09 1.8E-13 83.1 2.5 49 164-213 37-87 (91)
17 2ea6_A Ring finger protein 4; 98.7 7.9E-09 2.7E-13 76.7 2.6 53 161-213 9-66 (69)
18 1v87_A Deltex protein 2; ring- 98.6 1.1E-08 3.6E-13 83.9 2.4 47 167-213 25-92 (114)
19 2ct2_A Tripartite motif protei 98.6 4.6E-08 1.6E-12 76.0 4.6 53 161-213 9-66 (88)
20 2d8s_A Cellular modulator of i 98.6 7.6E-08 2.6E-12 75.5 5.8 48 165-214 13-69 (80)
21 3dpl_R Ring-box protein 1; ubi 98.5 3.2E-08 1.1E-12 81.6 3.5 48 165-212 35-98 (106)
22 2ecn_A Ring finger protein 141 98.5 5.1E-08 1.7E-12 73.0 4.2 47 163-214 11-59 (70)
23 3ng2_A RNF4, snurf, ring finge 98.5 2.9E-08 9.8E-13 74.2 2.6 50 165-214 8-62 (71)
24 2d8t_A Dactylidin, ring finger 98.5 7.1E-08 2.4E-12 72.7 4.2 47 163-213 11-59 (71)
25 2xeu_A Ring finger protein 4; 98.5 3.6E-08 1.2E-12 71.9 2.5 48 166-213 2-54 (64)
26 2djb_A Polycomb group ring fin 98.5 7.4E-08 2.5E-12 72.8 3.5 49 162-213 10-60 (72)
27 1g25_A CDK-activating kinase a 98.5 7E-08 2.4E-12 71.4 3.0 48 166-213 2-53 (65)
28 1chc_A Equine herpes virus-1 r 98.5 6E-08 2.1E-12 72.1 2.6 45 166-213 4-50 (68)
29 2ysl_A Tripartite motif-contai 98.4 2.2E-07 7.5E-12 69.8 4.9 48 162-213 15-67 (73)
30 2ecj_A Tripartite motif-contai 98.4 1.9E-07 6.6E-12 66.9 4.0 44 162-209 10-58 (58)
31 2egp_A Tripartite motif-contai 98.4 1.4E-07 4.7E-12 71.9 3.3 49 161-213 6-63 (79)
32 4ayc_A E3 ubiquitin-protein li 98.4 1E-07 3.5E-12 81.1 2.6 43 167-213 53-97 (138)
33 2yur_A Retinoblastoma-binding 98.3 2.1E-07 7E-12 70.9 3.2 48 162-213 10-62 (74)
34 4a0k_B E3 ubiquitin-protein li 98.3 6.5E-08 2.2E-12 81.3 0.4 47 166-212 47-109 (117)
35 2csy_A Zinc finger protein 183 98.3 3.2E-07 1.1E-11 70.7 3.9 47 163-213 11-59 (81)
36 2ysj_A Tripartite motif-contai 98.3 3.1E-07 1.1E-11 67.3 3.2 44 162-209 15-63 (63)
37 2ecw_A Tripartite motif-contai 98.3 4.8E-07 1.6E-11 69.3 4.0 50 160-213 12-69 (85)
38 2ecy_A TNF receptor-associated 98.3 3.7E-07 1.3E-11 67.7 3.1 47 163-213 11-60 (66)
39 1e4u_A Transcriptional repress 98.3 5.2E-07 1.8E-11 70.3 3.9 51 163-213 7-60 (78)
40 2ecv_A Tripartite motif-contai 98.3 7.4E-07 2.5E-11 68.2 4.5 49 162-214 14-70 (85)
41 1t1h_A Gspef-atpub14, armadill 98.2 6.7E-07 2.3E-11 68.2 3.3 46 164-213 5-53 (78)
42 3lrq_A E3 ubiquitin-protein li 98.2 4.8E-07 1.6E-11 72.9 2.3 47 164-213 19-68 (100)
43 2y43_A E3 ubiquitin-protein li 98.2 4.2E-07 1.4E-11 72.6 1.7 46 165-213 20-67 (99)
44 2ckl_A Polycomb group ring fin 98.1 6.3E-07 2.2E-11 72.8 1.9 46 165-213 13-60 (108)
45 3fl2_A E3 ubiquitin-protein li 98.1 7.5E-07 2.6E-11 74.1 2.3 46 165-214 50-98 (124)
46 3ztg_A E3 ubiquitin-protein li 98.1 1.1E-06 3.8E-11 69.0 3.0 47 163-213 9-60 (92)
47 1jm7_B BARD1, BRCA1-associated 98.1 1.3E-06 4.3E-11 72.2 3.0 46 165-213 20-65 (117)
48 3l11_A E3 ubiquitin-protein li 98.1 1.2E-06 4.1E-11 71.8 2.7 46 164-213 12-60 (115)
49 1bor_A Transcription factor PM 98.1 2E-06 6.8E-11 62.2 3.5 45 165-214 4-48 (56)
50 2ckl_B Ubiquitin ligase protei 98.1 1E-06 3.6E-11 76.7 1.9 48 163-213 50-100 (165)
51 1jm7_A BRCA1, breast cancer ty 98.0 1.4E-06 4.8E-11 70.5 1.9 44 166-213 20-68 (112)
52 4ap4_A E3 ubiquitin ligase RNF 98.0 1.6E-06 5.6E-11 71.5 1.4 49 165-213 70-123 (133)
53 2ct0_A Non-SMC element 1 homol 97.9 4.1E-06 1.4E-10 64.9 3.0 45 165-212 13-61 (74)
54 1z6u_A NP95-like ring finger p 97.9 3E-06 1E-10 73.5 2.4 46 165-214 76-124 (150)
55 3hct_A TNF receptor-associated 97.9 4.3E-06 1.5E-10 69.1 2.6 47 163-213 14-63 (118)
56 4ic3_A E3 ubiquitin-protein li 97.9 6.3E-06 2.1E-10 62.9 3.2 43 165-213 22-65 (74)
57 1rmd_A RAG1; V(D)J recombinati 97.9 4.6E-06 1.6E-10 68.4 2.3 87 164-255 20-111 (116)
58 3knv_A TNF receptor-associated 97.7 7.3E-06 2.5E-10 70.4 1.0 45 165-213 29-76 (141)
59 2kr4_A Ubiquitin conjugation f 97.7 2.9E-05 9.8E-10 60.9 4.2 46 164-213 11-58 (85)
60 1wgm_A Ubiquitin conjugation f 97.6 5.1E-05 1.7E-09 61.3 5.0 46 164-213 19-67 (98)
61 2kre_A Ubiquitin conjugation f 97.6 3.4E-05 1.2E-09 62.5 3.8 46 164-213 26-73 (100)
62 2y1n_A E3 ubiquitin-protein li 97.6 2.2E-05 7.6E-10 78.1 2.8 43 167-213 332-377 (389)
63 2yu4_A E3 SUMO-protein ligase 97.5 4E-05 1.4E-09 61.0 2.8 45 163-211 3-58 (94)
64 2c2l_A CHIP, carboxy terminus 97.5 5.5E-05 1.9E-09 69.7 3.7 46 164-213 205-253 (281)
65 2ecg_A Baculoviral IAP repeat- 97.5 4.9E-05 1.7E-09 57.9 2.5 42 166-213 24-66 (75)
66 3hcs_A TNF receptor-associated 97.3 7.7E-05 2.6E-09 65.0 2.6 48 163-214 14-64 (170)
67 2vje_A E3 ubiquitin-protein li 97.3 5.6E-05 1.9E-09 56.1 1.4 47 165-213 6-55 (64)
68 3k1l_B Fancl; UBC, ring, RWD, 97.3 6.3E-05 2.1E-09 73.9 1.9 47 166-213 307-371 (381)
69 2yho_A E3 ubiquitin-protein li 97.3 0.00013 4.4E-09 56.5 3.1 42 166-213 17-59 (79)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.3 7.3E-05 2.5E-09 55.3 1.6 43 166-212 5-56 (60)
71 3t6p_A Baculoviral IAP repeat- 97.2 0.00015 5.2E-09 71.0 3.6 43 165-213 293-336 (345)
72 2vje_B MDM4 protein; proto-onc 97.2 6.8E-05 2.3E-09 55.5 0.6 46 166-213 6-54 (63)
73 1wim_A KIAA0161 protein; ring 97.0 0.00019 6.6E-09 56.7 1.4 47 165-212 3-61 (94)
74 3htk_C E3 SUMO-protein ligase 97.0 0.00038 1.3E-08 65.9 3.6 49 162-213 176-230 (267)
75 2f42_A STIP1 homology and U-bo 97.0 0.00028 9.7E-09 63.2 2.4 45 165-213 104-151 (179)
76 2dgw_A Probable RNA-binding pr 97.0 0.0042 1.5E-07 47.6 8.9 70 62-134 7-76 (91)
77 2ea5_A Cell growth regulator w 96.9 0.00075 2.6E-08 50.7 4.2 44 164-213 12-56 (68)
78 3bs9_A Nucleolysin TIA-1 isofo 96.6 0.011 3.8E-07 44.5 8.8 72 62-134 3-75 (87)
79 2dgv_A HnRNP M, heterogeneous 96.6 0.014 4.8E-07 44.5 9.3 71 63-135 6-76 (92)
80 2dng_A Eukaryotic translation 96.5 0.021 7.3E-07 44.7 10.1 73 59-134 9-82 (103)
81 2cq3_A RNA-binding protein 9; 96.5 0.02 6.7E-07 44.8 9.9 71 62-134 12-82 (103)
82 2dnh_A Bruno-like 5, RNA bindi 96.4 0.068 2.3E-06 41.7 12.4 70 64-134 14-83 (105)
83 2dnz_A Probable RNA-binding pr 96.4 0.029 9.9E-07 43.0 9.9 70 64-134 4-74 (95)
84 2ywk_A Putative RNA-binding pr 96.3 0.023 7.8E-07 43.5 9.1 72 62-134 13-84 (95)
85 2d9p_A Polyadenylate-binding p 96.3 0.035 1.2E-06 43.3 10.2 70 63-134 13-82 (103)
86 1p27_B RNA-binding protein 8A; 96.2 0.039 1.4E-06 43.1 10.3 72 62-134 20-92 (106)
87 3vk6_A E3 ubiquitin-protein li 96.2 0.0015 5.2E-08 53.3 1.9 65 169-244 3-70 (101)
88 2fy1_A RNA-binding motif prote 96.2 0.026 8.7E-07 45.7 9.3 72 63-135 5-76 (116)
89 2do4_A Squamous cell carcinoma 96.2 0.028 9.7E-07 43.6 9.2 70 64-134 16-85 (100)
90 1oo0_B CG8781-PA, drosophila Y 96.2 0.021 7.2E-07 45.1 8.6 73 61-134 22-95 (110)
91 2cqc_A Arginine/serine-rich sp 96.2 0.031 1.1E-06 42.7 9.3 71 63-134 13-84 (95)
92 2jrs_A RNA-binding protein 39; 96.2 0.036 1.2E-06 44.3 9.9 74 61-135 22-96 (108)
93 2dgo_A Cytotoxic granule-assoc 96.2 0.044 1.5E-06 43.6 10.3 73 61-134 11-84 (115)
94 1x4e_A RNA binding motif, sing 96.1 0.017 5.8E-07 43.5 7.4 69 64-133 4-73 (85)
95 2bay_A PRE-mRNA splicing facto 96.1 0.0015 5.2E-08 48.2 1.4 43 168-213 4-48 (61)
96 1wi8_A EIF-4B, eukaryotic tran 96.1 0.027 9.2E-07 44.1 8.7 73 59-134 9-83 (104)
97 2dnm_A SRP46 splicing factor; 96.1 0.029 9.8E-07 43.8 8.6 71 63-134 11-82 (103)
98 2do0_A HnRNP M, heterogeneous 96.1 0.043 1.5E-06 43.5 9.7 71 63-134 13-83 (114)
99 2dhg_A TRNA selenocysteine ass 96.1 0.035 1.2E-06 43.3 9.0 71 64-134 8-79 (104)
100 1x5o_A RNA binding motif, sing 96.0 0.062 2.1E-06 42.6 10.6 70 64-134 24-93 (114)
101 2la6_A RNA-binding protein FUS 96.0 0.069 2.4E-06 41.4 10.6 74 60-134 8-90 (99)
102 2e5h_A Zinc finger CCHC-type a 96.0 0.029 1E-06 42.8 8.3 71 63-134 14-85 (94)
103 2cqi_A Nucleolysin TIAR; RNA r 96.0 0.043 1.5E-06 42.8 9.2 69 63-133 13-81 (103)
104 3ulh_A THO complex subunit 4; 95.9 0.046 1.6E-06 42.8 9.3 72 62-134 26-97 (107)
105 3mdf_A Peptidyl-prolyl CIS-tra 95.9 0.031 1.1E-06 41.8 7.9 70 64-134 6-76 (85)
106 2cph_A RNA binding motif prote 95.9 0.052 1.8E-06 42.4 9.5 71 63-135 13-87 (107)
107 3lqv_A PRE-mRNA branch site pr 95.9 0.043 1.5E-06 43.6 9.0 70 62-134 5-74 (115)
108 3md1_A Nuclear and cytoplasmic 95.9 0.052 1.8E-06 40.3 8.9 68 66-134 2-70 (83)
109 1whw_A Hypothetical protein ri 95.8 0.04 1.4E-06 42.6 8.3 70 64-134 7-77 (99)
110 1x5s_A Cold-inducible RNA-bind 95.8 0.053 1.8E-06 42.1 9.0 71 63-134 10-81 (102)
111 2cq0_A Eukaryotic translation 95.8 0.065 2.2E-06 41.7 9.4 71 63-134 13-84 (103)
112 2err_A Ataxin-2-binding protei 95.7 0.032 1.1E-06 44.5 7.6 70 63-134 27-96 (109)
113 2x1f_A MRNA 3'-END-processing 95.7 0.036 1.2E-06 42.7 7.7 69 65-134 2-71 (96)
114 2ytc_A PRE-mRNA-splicing facto 95.7 0.057 1.9E-06 40.4 8.5 66 63-134 10-76 (85)
115 1x5u_A Splicing factor 3B subu 95.7 0.073 2.5E-06 41.5 9.4 71 63-134 13-84 (105)
116 2cpz_A CUG triplet repeat RNA- 95.7 0.048 1.6E-06 43.5 8.5 70 64-134 24-94 (115)
117 3nmr_A Cugbp ELAV-like family 95.6 0.048 1.7E-06 45.5 8.6 69 64-133 2-73 (175)
118 2dgs_A DAZ-associated protein 95.6 0.11 3.8E-06 40.0 10.2 71 63-135 8-79 (99)
119 4fxv_A ELAV-like protein 1; RN 95.6 0.062 2.1E-06 42.3 8.7 70 64-134 18-88 (99)
120 3ex7_B RNA-binding protein 8A; 95.5 0.062 2.1E-06 43.4 8.8 74 61-135 18-92 (126)
121 4a8x_A RNA-binding protein wit 95.5 0.041 1.4E-06 41.3 7.0 70 64-134 3-74 (88)
122 2dgp_A Bruno-like 4, RNA bindi 95.5 0.14 4.8E-06 39.9 10.3 71 61-132 9-80 (106)
123 2div_A TRNA selenocysteine ass 95.4 0.071 2.4E-06 41.1 8.4 71 64-135 8-80 (99)
124 2krb_A Eukaryotic translation 95.4 0.051 1.7E-06 40.6 7.4 68 66-135 2-75 (81)
125 2cpj_A Non-POU domain-containi 95.4 0.11 3.6E-06 40.3 9.4 66 63-134 13-78 (99)
126 2kxn_B Transformer-2 protein h 95.4 0.074 2.5E-06 44.0 9.0 70 64-134 45-115 (129)
127 2kt5_A RNA and export factor-b 95.4 0.073 2.5E-06 43.0 8.7 71 63-134 33-103 (124)
128 1x5t_A Splicing factor 3B subu 95.4 0.046 1.6E-06 41.9 7.1 70 64-134 4-75 (96)
129 2dgt_A RNA-binding protein 30; 95.4 0.068 2.3E-06 40.8 8.1 64 63-134 8-71 (92)
130 2fc9_A NCL protein; structure 95.4 0.064 2.2E-06 41.6 8.0 68 63-134 13-80 (101)
131 3md3_A Nuclear and cytoplasmic 95.3 0.068 2.3E-06 44.0 8.6 66 67-133 2-67 (166)
132 3nmr_A Cugbp ELAV-like family 95.3 0.18 6E-06 41.9 11.2 70 64-134 94-163 (175)
133 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.3 0.066 2.3E-06 43.7 8.4 70 63-133 61-131 (140)
134 1fxl_A Paraneoplastic encephal 95.3 0.071 2.4E-06 44.0 8.6 69 65-134 2-71 (167)
135 2xs2_A Deleted in azoospermia- 95.3 0.042 1.4E-06 42.8 6.8 68 63-133 7-74 (102)
136 1x4a_A Splicing factor, argini 95.3 0.085 2.9E-06 41.6 8.6 69 63-134 20-88 (109)
137 2dnp_A RNA-binding protein 14; 95.2 0.051 1.7E-06 41.4 7.0 63 64-134 8-70 (90)
138 2j76_E EIF-4B, EIF4B, eukaryot 95.2 0.033 1.1E-06 43.5 6.0 71 62-135 16-88 (100)
139 2cqb_A Peptidyl-prolyl CIS-tra 95.1 0.048 1.6E-06 42.4 6.6 69 64-133 11-80 (102)
140 2khc_A Testis-specific RNP-typ 95.1 0.088 3E-06 42.0 8.4 71 63-134 38-109 (118)
141 2cpe_A RNA-binding protein EWS 95.1 0.073 2.5E-06 42.1 7.9 71 63-134 13-92 (113)
142 1p1t_A Cleavage stimulation fa 95.1 0.04 1.4E-06 42.9 6.2 71 64-135 7-78 (104)
143 2hzc_A Splicing factor U2AF 65 95.1 0.065 2.2E-06 40.1 7.2 66 63-134 4-79 (87)
144 1rk8_A CG8781-PA, CG8781-PA pr 95.1 0.12 4E-06 44.1 9.5 72 62-134 69-141 (165)
145 2la4_A Nuclear and cytoplasmic 95.0 0.089 3.1E-06 40.8 7.9 65 64-134 26-90 (101)
146 2cpf_A RNA binding motif prote 95.0 0.068 2.3E-06 41.1 7.1 70 64-134 4-77 (98)
147 3ucg_A Polyadenylate-binding p 94.9 0.15 5.1E-06 38.2 8.8 68 65-134 6-74 (89)
148 2cqd_A RNA-binding region cont 94.9 0.16 5.3E-06 40.5 9.2 69 63-133 15-84 (116)
149 4f25_A Polyadenylate-binding p 94.9 0.11 3.7E-06 41.7 8.2 68 65-134 5-72 (115)
150 1h2v_Z 20 kDa nuclear CAP bind 94.8 0.17 5.7E-06 42.6 9.6 71 63-134 37-108 (156)
151 2fc8_A NCL protein; structure 94.8 0.14 4.7E-06 39.7 8.4 68 63-134 13-81 (102)
152 2dis_A Unnamed protein product 94.8 0.12 4.3E-06 40.4 8.2 71 64-134 7-81 (109)
153 2cpy_A RNA-binding protein 12; 94.7 0.087 3E-06 42.2 7.2 70 63-134 13-83 (114)
154 1x4g_A Nucleolysin TIAR; struc 94.7 0.1 3.5E-06 41.1 7.5 65 64-134 24-88 (109)
155 2dh8_A DAZ-associated protein 94.5 0.15 5E-06 39.8 8.1 70 63-134 14-84 (105)
156 1b7f_A Protein (SXL-lethal pro 94.5 0.21 7.1E-06 41.3 9.4 70 64-134 88-158 (168)
157 2jwn_A Embryonic polyadenylate 94.5 0.17 5.7E-06 40.7 8.6 69 64-134 35-104 (124)
158 2dgu_A Heterogeneous nuclear r 94.5 0.099 3.4E-06 40.8 7.0 62 64-133 10-71 (103)
159 1fxl_A Paraneoplastic encephal 94.5 0.23 7.9E-06 40.8 9.6 70 64-134 87-157 (167)
160 1u6f_A Tcubp1, RNA-binding pro 94.5 0.22 7.6E-06 40.8 9.4 71 63-134 40-111 (139)
161 1why_A Hypothetical protein ri 94.5 0.15 5.1E-06 39.2 7.8 64 64-133 16-79 (97)
162 2qfj_A FBP-interacting repress 94.4 0.14 4.9E-06 44.2 8.5 71 64-135 27-98 (216)
163 2db1_A Heterogeneous nuclear r 94.3 0.18 6.2E-06 40.7 8.4 72 62-134 14-87 (118)
164 2lmi_A GRSF-1, G-rich sequence 94.3 0.14 4.9E-06 40.4 7.6 73 62-135 8-82 (107)
165 2e44_A Insulin-like growth fac 94.3 0.33 1.1E-05 37.0 9.5 67 64-134 14-81 (96)
166 2cpi_A CCR4-NOT transcription 94.3 0.2 6.8E-06 39.8 8.4 71 63-134 13-90 (111)
167 2g4b_A Splicing factor U2AF 65 94.3 0.18 6.2E-06 41.9 8.6 70 64-134 93-163 (172)
168 2dgx_A KIAA0430 protein; RRM d 94.3 0.15 5.3E-06 39.3 7.5 70 62-134 6-79 (96)
169 2dnq_A RNA-binding protein 4B; 94.3 0.26 8.8E-06 37.3 8.7 64 64-135 7-70 (90)
170 1wg1_A KIAA1579 protein, homol 94.2 0.083 2.8E-06 40.1 5.8 63 65-134 5-67 (88)
171 3nw0_A Non-structural maintena 94.2 0.021 7E-07 53.1 2.8 44 166-212 179-226 (238)
172 1x4h_A RNA-binding protein 28; 94.2 0.28 9.5E-06 38.4 9.1 71 63-134 13-90 (111)
173 3md3_A Nuclear and cytoplasmic 94.2 0.29 9.9E-06 40.1 9.6 71 63-134 85-156 (166)
174 2cpd_A Apobec-1 stimulating pr 94.2 0.19 6.4E-06 38.8 7.9 64 63-133 13-77 (99)
175 2cq4_A RNA binding motif prote 94.2 0.15 5.2E-06 40.4 7.6 69 64-134 24-93 (114)
176 2mss_A Protein (musashi1); RNA 94.2 0.14 4.9E-06 37.2 6.8 65 68-134 2-67 (75)
177 1nu4_A U1A RNA binding domain; 94.1 0.063 2.2E-06 41.2 5.0 68 64-134 7-78 (97)
178 3s7r_A Heterogeneous nuclear r 94.1 0.3 1E-05 36.5 8.8 69 63-133 9-78 (87)
179 1x4c_A Splicing factor, argini 94.1 0.17 5.9E-06 39.9 7.7 66 62-134 12-77 (108)
180 1wg5_A Heterogeneous nuclear r 94.1 0.26 8.8E-06 38.7 8.6 71 63-135 13-84 (104)
181 2hvz_A Splicing factor, argini 94.0 0.12 4E-06 40.1 6.4 64 67-135 2-65 (101)
182 1b7f_A Protein (SXL-lethal pro 94.0 0.13 4.3E-06 42.6 7.1 69 65-134 3-72 (168)
183 2qfj_A FBP-interacting repress 94.0 0.31 1E-05 42.1 9.8 69 65-134 125-194 (216)
184 1s79_A Lupus LA protein; RRM, 94.0 0.28 9.6E-06 38.9 8.8 70 64-135 10-79 (103)
185 2dnn_A RNA-binding protein 12; 94.0 0.16 5.5E-06 41.0 7.4 68 64-134 15-82 (109)
186 3s8s_A Histone-lysine N-methyl 93.8 0.35 1.2E-05 38.7 9.1 69 65-134 6-75 (110)
187 2kn4_A Immunoglobulin G-bindin 93.8 0.3 1E-05 40.8 9.0 71 63-134 68-139 (158)
188 2ek1_A RNA-binding protein 12; 93.8 0.19 6.5E-06 38.2 7.1 69 65-134 15-84 (95)
189 3ns6_A Eukaryotic translation 93.8 0.11 3.7E-06 40.7 5.8 71 63-134 4-81 (100)
190 2ki2_A SS-DNA binding protein 93.7 0.17 5.7E-06 38.2 6.7 67 67-135 3-70 (90)
191 2f3j_A RNA and export factor b 93.7 0.25 8.6E-06 43.1 8.6 71 63-134 86-156 (177)
192 2cqg_A TDP-43, TAR DNA-binding 93.6 0.5 1.7E-05 36.5 9.5 64 62-126 12-76 (103)
193 1wez_A HnRNP H', FTP-3, hetero 93.5 0.37 1.3E-05 38.0 8.6 69 64-135 14-82 (102)
194 2lea_A Serine/arginine-rich sp 93.5 0.14 4.6E-06 42.6 6.3 72 63-135 45-117 (135)
195 1l3k_A Heterogeneous nuclear r 93.5 0.33 1.1E-05 41.2 8.9 70 62-133 10-80 (196)
196 2cqp_A RNA-binding protein 12; 93.5 0.39 1.3E-05 36.7 8.5 70 64-134 14-84 (98)
197 3p5t_L Cleavage and polyadenyl 93.4 0.2 6.8E-06 38.1 6.6 69 67-135 3-73 (90)
198 2lxi_A RNA-binding protein 10; 93.2 0.094 3.2E-06 40.5 4.5 69 65-133 1-71 (91)
199 2yh0_A Splicing factor U2AF 65 93.2 0.4 1.4E-05 40.8 9.0 71 63-134 112-183 (198)
200 3beg_B Splicing factor, argini 93.1 0.25 8.5E-06 39.6 7.1 68 64-138 15-82 (115)
201 2nlw_A Eukaryotic translation 93.1 0.39 1.4E-05 37.6 8.1 70 63-134 13-88 (105)
202 3n9u_C Cleavage and polyadenyl 93.0 0.38 1.3E-05 41.1 8.4 71 64-134 54-126 (156)
203 2e5j_A Methenyltetrahydrofolat 92.9 0.61 2.1E-05 35.7 8.9 67 63-134 17-83 (97)
204 2hgm_A HNRPF protein, heteroge 92.9 0.41 1.4E-05 39.8 8.3 69 63-134 40-110 (126)
205 2i2y_A Fusion protein consists 92.9 0.49 1.7E-05 39.3 8.9 67 63-134 71-137 (150)
206 2hgl_A HNRPF protein, heteroge 92.9 0.29 9.7E-06 41.2 7.4 73 62-135 41-115 (136)
207 2jvo_A Nucleolar protein 3; nu 92.8 0.33 1.1E-05 38.6 7.3 64 63-134 29-92 (108)
208 1wf1_A RNA-binding protein RAL 92.8 0.44 1.5E-05 37.5 8.0 66 61-134 23-89 (110)
209 1fjc_A Nucleolin RBD2, protein 92.7 0.21 7.1E-06 38.1 5.8 67 63-134 14-80 (96)
210 1qm9_A Polypyrimidine tract-bi 92.6 0.43 1.5E-05 40.9 8.3 66 64-133 119-184 (198)
211 3r27_A HnRNP L, heterogeneous 92.5 0.46 1.6E-05 38.2 7.8 63 64-132 20-82 (100)
212 2adc_A Polypyrimidine tract-bi 92.5 0.34 1.1E-05 43.2 7.7 67 63-134 32-99 (229)
213 2cpx_A Hypothetical protein FL 92.4 0.84 2.9E-05 35.9 9.2 69 63-134 23-94 (115)
214 1uaw_A Mouse-musashi-1; RNP-ty 92.3 0.35 1.2E-05 35.1 6.4 66 67-134 2-68 (77)
215 2xnq_A Nuclear polyadenylated 92.3 0.66 2.2E-05 35.9 8.3 64 62-133 19-83 (97)
216 4f02_A Polyadenylate-binding p 92.3 0.46 1.6E-05 41.8 8.3 68 65-134 103-170 (213)
217 1x4b_A Heterogeneous nuclear r 92.1 0.48 1.6E-05 37.5 7.5 69 64-134 26-95 (116)
218 3smz_A Protein raver-1, ribonu 92.1 0.46 1.6E-05 43.3 8.3 71 63-134 182-253 (284)
219 3q2s_C Cleavage and polyadenyl 92.1 0.55 1.9E-05 42.5 8.8 71 64-134 67-139 (229)
220 2lkz_A RNA-binding protein 5; 92.1 0.26 9E-06 38.7 5.8 68 64-131 8-77 (95)
221 1qm9_A Polypyrimidine tract-bi 91.7 0.26 9.1E-06 42.3 5.9 65 65-134 3-68 (198)
222 3egn_A RNA-binding protein 40; 91.7 0.77 2.6E-05 37.8 8.5 70 63-134 43-119 (143)
223 2cqh_A IGF-II mRNA-binding pro 91.6 0.33 1.1E-05 36.8 5.8 65 64-134 7-72 (93)
224 1whx_A Hypothetical protein ri 91.6 0.5 1.7E-05 37.6 7.0 65 65-135 10-74 (111)
225 2ghp_A U4/U6 snRNA-associated 91.5 0.57 1.9E-05 42.8 8.3 69 64-134 209-280 (292)
226 2adc_A Polypyrimidine tract-bi 91.5 0.87 3E-05 40.4 9.3 66 64-133 150-215 (229)
227 1wel_A RNA-binding protein 12; 91.5 0.94 3.2E-05 36.4 8.7 73 61-135 21-94 (124)
228 1l3k_A Heterogeneous nuclear r 91.4 1.3 4.4E-05 37.4 10.0 69 64-134 103-172 (196)
229 1uw4_A UPF3X; nonsense mediate 91.3 0.7 2.4E-05 36.7 7.5 68 68-136 4-74 (91)
230 2kvi_A Nuclear polyadenylated 91.3 0.97 3.3E-05 34.6 8.2 63 64-134 9-72 (96)
231 2cjk_A Nuclear polyadenylated 91.0 0.49 1.7E-05 39.0 6.7 68 64-132 2-73 (167)
232 4f02_A Polyadenylate-binding p 90.7 1 3.5E-05 39.5 8.9 72 62-134 12-84 (213)
233 3smz_A Protein raver-1, ribonu 90.5 1 3.5E-05 40.8 9.0 70 64-134 94-164 (284)
234 1wex_A Hypothetical protein (r 90.5 1.5 5.3E-05 34.7 8.9 62 64-131 14-75 (104)
235 2rs2_A Musashi-1, RNA-binding 90.1 0.68 2.3E-05 36.6 6.5 69 63-133 23-92 (109)
236 1fje_B Nucleolin RBD12, protei 89.9 0.71 2.4E-05 38.5 6.8 66 64-134 98-163 (175)
237 2cjk_A Nuclear polyadenylated 89.9 0.9 3.1E-05 37.4 7.4 68 65-134 87-155 (167)
238 2g4b_A Splicing factor U2AF 65 89.8 1 3.5E-05 37.2 7.7 65 64-134 3-77 (172)
239 1iqt_A AUF1, heterogeneous nuc 89.7 0.48 1.6E-05 34.2 4.9 65 68-134 2-67 (75)
240 2ghp_A U4/U6 snRNA-associated 89.7 0.53 1.8E-05 43.0 6.3 71 64-134 116-186 (292)
241 3sde_A Paraspeckle component 1 89.4 1.1 3.7E-05 40.7 8.1 66 63-134 20-85 (261)
242 1sjr_A Polypyrimidine tract-bi 89.4 1.3 4.6E-05 38.6 8.3 68 63-134 44-111 (164)
243 3sde_A Paraspeckle component 1 89.4 2 6.9E-05 38.9 9.9 68 64-132 95-162 (261)
244 2e5g_A U6 snRNA-specific termi 89.0 2.4 8.1E-05 32.1 8.7 65 64-134 7-71 (94)
245 2cq1_A PTB-like protein L; RRM 88.8 1.4 4.9E-05 34.8 7.4 61 64-130 14-74 (101)
246 1fj7_A Nucleolin RBD1, protein 88.6 0.41 1.4E-05 36.9 4.0 67 64-134 16-84 (101)
247 2e5i_A Heterogeneous nuclear r 88.6 3.5 0.00012 34.0 10.0 64 66-134 26-89 (124)
248 3pgw_A U1-A; protein-RNA compl 88.5 1.3 4.6E-05 40.0 8.1 68 64-134 8-79 (282)
249 2voo_A Lupus LA protein; RNA-b 88.4 1.7 5.8E-05 38.2 8.4 64 65-129 109-172 (193)
250 2jvr_A Nucleolar protein 3; RN 88.4 0.98 3.4E-05 36.5 6.3 68 64-134 27-94 (111)
251 2dha_A FLJ20171 protein; RRM d 88.3 0.94 3.2E-05 37.3 6.3 71 63-134 21-94 (123)
252 2dnl_A Cytoplasmic polyadenyla 88.3 0.72 2.5E-05 36.6 5.4 67 64-132 7-80 (114)
253 3pgw_A U1-A; protein-RNA compl 88.3 1.2 4.1E-05 40.4 7.6 65 64-133 206-270 (282)
254 2a3j_A U1 small nuclear ribonu 87.6 3 0.0001 34.3 9.0 69 64-135 28-100 (127)
255 1x4d_A Matrin 3; structural ge 87.0 1.7 5.7E-05 34.7 6.8 62 64-131 14-76 (102)
256 3pgw_S U1-70K; protein-RNA com 86.7 1.4 4.9E-05 43.8 7.6 69 65-134 102-171 (437)
257 2lcw_A RNA-binding protein FUS 86.6 0.13 4.4E-06 41.0 0.0 70 64-134 6-84 (116)
258 1wf0_A TDP-43, TAR DNA-binding 86.6 1.1 3.6E-05 33.6 5.2 54 64-122 4-57 (88)
259 2hgn_A Heterogeneous nuclear r 86.4 0.66 2.3E-05 39.1 4.3 70 63-135 44-113 (139)
260 2m2b_A RNA-binding protein 10; 86.2 1.3 4.3E-05 36.1 5.9 66 63-130 21-89 (131)
261 2l08_A Regulator of nonsense t 85.9 0.6 2E-05 37.7 3.6 71 65-136 9-82 (97)
262 2yh0_A Splicing factor U2AF 65 85.2 2 6.8E-05 36.3 6.8 64 65-134 4-77 (198)
263 3tyt_A Heterogeneous nuclear r 85.1 3.8 0.00013 36.1 8.8 73 65-138 123-196 (205)
264 2l9w_A U4/U6 snRNA-associated- 84.4 2.9 9.8E-05 34.7 7.1 67 62-133 18-88 (117)
265 1x5p_A Negative elongation fac 84.3 7.1 0.00024 29.5 9.1 62 64-133 14-75 (97)
266 2ad9_A Polypyrimidine tract-bi 83.9 2.8 9.5E-05 34.5 6.9 61 64-130 30-90 (119)
267 3d2w_A TAR DNA-binding protein 83.7 2.9 9.9E-05 31.7 6.6 60 64-132 10-69 (89)
268 2pe8_A Splicing factor 45; RRM 83.2 7.1 0.00024 30.8 8.9 69 65-134 8-83 (105)
269 1sjq_A Polypyrimidine tract-bi 82.8 4.2 0.00014 32.7 7.4 61 64-130 15-75 (105)
270 3v43_A Histone acetyltransfera 81.4 2.2 7.5E-05 34.6 5.3 37 165-201 3-44 (112)
271 1x4f_A Matrin 3; structural ge 81.2 5.1 0.00017 32.5 7.4 62 64-131 24-86 (112)
272 2bz2_A Negative elongation fac 80.2 7.4 0.00025 31.3 8.2 64 63-134 37-100 (121)
273 3v4m_A Splicing factor U2AF 65 79.5 3.8 0.00013 32.4 6.0 69 65-134 5-86 (105)
274 2ysm_A Myeloid/lymphoid or mix 78.8 3.9 0.00013 32.7 6.0 37 165-202 5-41 (111)
275 1jmt_A Splicing factor U2AF 35 78.5 3.9 0.00013 32.2 5.8 44 91-134 52-95 (104)
276 3zzy_A Polypyrimidine tract-bi 78.2 10 0.00036 31.6 8.6 67 64-134 27-93 (130)
277 3tyt_A Heterogeneous nuclear r 77.3 6.5 0.00022 34.6 7.5 66 64-134 3-69 (205)
278 2kwj_A Zinc finger protein DPF 77.2 3 0.0001 33.9 4.9 34 168-201 2-41 (114)
279 2cq2_A Hypothetical protein LO 77.0 3.2 0.00011 33.9 5.0 66 65-136 25-93 (114)
280 1fje_B Nucleolin RBD12, protei 75.9 1.3 4.6E-05 36.8 2.4 68 63-133 11-79 (175)
281 2jun_A Midline-1; B-BOX, TRIM, 75.1 5.9 0.0002 30.7 5.9 35 166-202 2-38 (101)
282 3s6e_A RNA-binding protein 39; 71.4 12 0.00042 30.1 7.2 67 65-134 7-82 (114)
283 1owx_A Lupus LA protein, SS-B, 69.5 23 0.00078 29.2 8.5 59 64-128 17-77 (121)
284 2j8a_A Histone-lysine N-methyl 69.3 13 0.00045 31.6 7.0 68 66-134 3-85 (136)
285 2lri_C Autoimmune regulator; Z 65.8 10 0.00036 27.9 5.1 35 164-202 9-43 (66)
286 3u1l_A PRE-mRNA-splicing facto 65.3 13 0.00046 34.1 6.9 64 63-132 132-204 (240)
287 3tht_A Alkylated DNA repair pr 64.8 23 0.00079 34.2 8.8 83 65-153 18-104 (345)
288 2dit_A HIV TAT specific factor 61.0 45 0.0015 25.8 8.5 67 64-134 14-91 (112)
289 1wg2_A Zinc finger (AN1-like) 59.1 6.7 0.00023 29.2 2.9 26 217-243 14-41 (64)
290 3ihp_A Ubiquitin carboxyl-term 58.9 6.8 0.00023 42.3 4.2 35 227-265 59-93 (854)
291 3ue2_A Poly(U)-binding-splicin 57.9 11 0.00036 30.6 4.3 69 65-134 20-98 (118)
292 1wfh_A Zinc finger (AN1-like) 55.1 8.4 0.00029 28.7 2.8 26 217-243 14-41 (64)
293 1x4w_A Hypothetical protein FL 54.6 5.4 0.00019 30.0 1.8 26 217-243 14-44 (67)
294 2wbr_A GW182, gawky, LD47780P; 54.3 45 0.0015 26.1 7.2 64 65-134 7-70 (89)
295 2xb1_A Pygopus homolog 2, B-ce 54.0 5 0.00017 32.3 1.6 32 167-198 3-35 (105)
296 1we9_A PHD finger family prote 49.4 18 0.00063 25.8 4.0 35 165-199 4-38 (64)
297 1wfp_A Zinc finger (AN1-like) 49.4 11 0.00039 28.8 2.8 26 217-243 24-51 (74)
298 3lcn_C MRNA transport factor G 49.0 12 0.0004 23.4 2.3 17 333-349 9-25 (29)
299 3o36_A Transcription intermedi 48.1 19 0.00067 31.1 4.6 43 167-213 4-52 (184)
300 1wil_A KIAA1045 protein; ring 46.1 34 0.0012 26.9 5.2 40 161-202 9-48 (89)
301 2e6r_A Jumonji/ARID domain-con 44.1 15 0.0005 28.8 2.9 36 163-199 12-47 (92)
302 3dxb_A Thioredoxin N-terminall 43.7 50 0.0017 28.6 6.7 46 90-135 153-203 (222)
303 1f62_A Transcription factor WS 43.6 17 0.00059 24.8 2.9 30 169-199 2-31 (51)
304 1xke_A RAN-binding protein 2; 43.3 71 0.0024 26.3 7.2 87 36-129 24-116 (130)
305 2dnr_A Synaptojanin-1; RRM dom 42.8 89 0.003 24.5 7.2 61 65-134 7-75 (91)
306 3lqh_A Histone-lysine N-methyl 42.5 13 0.00043 33.0 2.5 31 169-199 4-37 (183)
307 1rrp_B Nuclear pore complex pr 42.2 1E+02 0.0036 25.3 8.1 100 22-128 22-129 (134)
308 3lo3_A Uncharacterized conserv 41.0 16 0.00056 28.4 2.7 20 106-125 52-71 (94)
309 2vpb_A Hpygo1, pygopus homolog 40.5 15 0.00051 27.0 2.2 34 165-198 6-40 (65)
310 1wff_A Riken cDNA 2810002D23 p 38.7 22 0.00075 27.9 3.0 25 218-243 25-52 (85)
311 4gne_A Histone-lysine N-methyl 38.0 76 0.0026 25.5 6.3 62 165-242 13-81 (107)
312 3u5n_A E3 ubiquitin-protein li 37.0 19 0.00064 31.9 2.8 42 167-212 7-54 (207)
313 2a20_A Regulating synaptic mem 36.9 12 0.00042 27.5 1.2 36 165-201 7-43 (62)
314 1mm2_A MI2-beta; PHD, zinc fin 36.3 29 0.001 24.8 3.3 32 165-200 7-38 (61)
315 2fiu_A Conserved hypothetical 34.5 31 0.0011 27.1 3.4 19 107-125 54-72 (99)
316 2jrp_A Putative cytoplasmic pr 33.2 19 0.00066 27.9 1.9 13 168-180 3-15 (81)
317 3kg0_A Snoab; polyketide, anth 32.9 1.7E+02 0.0059 23.6 7.9 59 65-125 24-88 (128)
318 2akl_A PHNA-like protein PA012 32.6 22 0.00075 30.1 2.3 23 217-239 26-53 (138)
319 3v43_A Histone acetyltransfera 32.6 29 0.001 27.7 3.0 32 169-200 63-94 (112)
320 1k5d_B RAN-specific GTPase-act 32.1 1.6E+02 0.0055 26.3 8.1 88 35-129 63-157 (201)
321 2dj7_A Actin-binding LIM prote 31.8 44 0.0015 24.7 3.7 47 158-213 6-52 (80)
322 1x62_A C-terminal LIM domain p 31.6 55 0.0019 23.8 4.3 41 163-213 11-51 (79)
323 2l43_A N-teminal domain from h 31.5 35 0.0012 26.3 3.2 38 162-199 20-58 (88)
324 2ku3_A Bromodomain-containing 31.0 34 0.0012 25.5 2.9 37 163-199 12-49 (71)
325 2diu_A KIAA0430 protein; struc 30.5 2E+02 0.0069 22.7 8.1 62 65-135 9-74 (96)
326 2k16_A Transcription initiatio 30.1 30 0.001 25.5 2.5 35 165-200 16-50 (75)
327 2e6s_A E3 ubiquitin-protein li 30.0 29 0.001 26.2 2.4 30 169-199 28-57 (77)
328 4hat_B RAN-specific GTPase-act 28.7 1.3E+02 0.0043 25.3 6.5 87 36-128 39-131 (140)
329 3asl_A E3 ubiquitin-protein li 28.4 29 0.001 25.6 2.2 30 169-199 20-49 (70)
330 1yuz_A Nigerythrin; rubrythrin 27.9 16 0.00053 32.7 0.6 9 230-238 186-194 (202)
331 3f1i_H Hepatocyte growth facto 26.8 29 0.001 27.8 2.0 14 336-349 54-67 (98)
332 2d9o_A DNAJ (HSP40) homolog, s 26.8 1.7E+02 0.0057 22.6 6.5 51 74-129 26-76 (100)
333 1dl6_A Transcription factor II 26.3 38 0.0013 24.2 2.3 12 228-239 28-39 (58)
334 1wfl_A Zinc finger protein 216 25.9 47 0.0016 25.4 2.9 25 218-243 25-51 (74)
335 2l5u_A Chromodomain-helicase-D 25.8 49 0.0017 23.6 2.9 31 166-200 10-40 (61)
336 1ufw_A Synaptojanin 2; RNP dom 25.4 1.1E+02 0.0037 24.3 5.1 61 65-134 15-84 (95)
337 6rxn_A Rubredoxin; electron tr 25.4 24 0.00081 24.4 1.0 11 229-239 3-13 (46)
338 2xzl_A ATP-dependent helicase 24.7 68 0.0023 34.2 5.0 77 219-295 12-101 (802)
339 1x61_A Thyroid receptor intera 24.6 69 0.0024 22.6 3.6 40 166-213 4-43 (72)
340 2kgg_A Histone demethylase jar 24.5 48 0.0016 22.8 2.6 31 169-199 4-35 (52)
341 1iuj_A Hypothetical protein TT 24.4 1.1E+02 0.0038 22.8 5.0 48 79-126 15-68 (106)
342 2ec1_A Nucleoporin 50 kDa; ran 24.2 39 0.0013 27.8 2.4 86 34-128 25-120 (125)
343 1tz0_A Hypothetical protein; s 24.0 1.1E+02 0.0037 24.1 5.0 56 70-126 13-75 (114)
344 2yql_A PHD finger protein 21A; 23.8 57 0.0019 22.7 2.9 32 165-200 7-38 (56)
345 3hhl_A RPA0582; alpha-beta-bar 23.5 46 0.0016 28.0 2.7 20 106-125 87-106 (143)
346 3ask_A E3 ubiquitin-protein li 23.3 39 0.0013 30.9 2.4 30 169-199 176-205 (226)
347 2kpi_A Uncharacterized protein 23.2 45 0.0015 23.8 2.2 20 162-181 5-24 (56)
348 1iml_A CRIP, cysteine rich int 22.8 44 0.0015 24.1 2.2 37 168-213 1-37 (76)
349 2j9u_B VPS36, vacuolar protein 22.0 32 0.0011 26.4 1.3 24 204-227 18-49 (76)
350 4djc_B Sodium channel protein 21.4 40 0.0014 21.9 1.5 16 340-355 2-19 (35)
351 2csz_A Synaptotagmin-like prot 21.1 20 0.00069 27.5 -0.0 49 164-238 22-72 (76)
352 2co8_A NEDD9 interacting prote 21.0 1.1E+02 0.0036 22.6 4.1 42 163-213 11-52 (82)
353 2ysm_A Myeloid/lymphoid or mix 20.8 63 0.0021 25.5 2.9 31 169-200 56-86 (111)
354 2oqb_A Histone-arginine methyl 20.6 57 0.0019 27.0 2.6 19 109-127 84-102 (117)
355 2ri7_A Nucleosome-remodeling f 20.3 31 0.0011 29.4 1.0 34 165-199 6-39 (174)
356 2zdo_A Heme-degrading monooxyg 20.2 1.5E+02 0.0051 22.6 5.0 48 79-126 18-72 (109)
357 1xwh_A Autoimmune regulator; P 20.2 90 0.0031 22.4 3.4 31 165-199 6-36 (66)
358 2ko5_A Ring finger protein Z; 20.1 90 0.0031 25.0 3.6 49 159-213 20-71 (99)
359 3bj4_A Potassium voltage-gated 20.0 70 0.0024 22.5 2.6 18 321-338 30-47 (49)
No 1
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.90 E-value=1.4e-24 Score=186.13 Aligned_cols=84 Identities=30% Similarity=0.486 Sum_probs=68.8
Q ss_pred hhhhccccccccccccccc----------cCCCCcccccCCCCceeeeccccceeccCCC------CcHHhhhhhhcCCe
Q 018432 196 SCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHW 259 (356)
Q Consensus 196 ~Cl~kW~~ssCPvCR~~~~----------~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~~------~~HA~~H~~~t~H~ 259 (356)
.|+++|.+..||+|++... ++..+.|.+|+...+||+||+||+||||||. ++||++||++++|+
T Consensus 2 ~~~~~W~~e~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~ 81 (129)
T 2g45_A 2 QEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP 81 (129)
T ss_dssp ---------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred hHHHhhcCCCCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence 6899999999999999752 2345789999999999999999999999997 89999999999999
Q ss_pred eeEeCCC-----ceEEEccCCceee
Q 018432 260 YSLDLRT-----QQIWDYVGDNYVH 279 (356)
Q Consensus 260 ~al~l~t-----~~VwcY~cd~yVH 279 (356)
++++++| ++||||.||+||+
T Consensus 82 l~v~l~t~~~~~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 82 LAVKLGTITPDGADVYSYDEDDMVL 106 (129)
T ss_dssp EEEETTCCBTTBCCEEETTTTEEEE
T ss_pred EEEECCCCCCCCCeEEECCCCCEeE
Confidence 9999999 6999999999995
No 2
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.90 E-value=7.1e-25 Score=187.40 Aligned_cols=107 Identities=28% Similarity=0.532 Sum_probs=90.9
Q ss_pred eeecCCCccchhhhhccc-------cccccccccccccCCCCcccccCCCCceeeeccccceeccCC-CCcHHhhhhhh-
Q 018432 185 LSTICDHSFQCSCTAKWT-------VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY-KEGHAVRHWKD- 255 (356)
Q Consensus 185 lt~~C~H~FH~~Cl~kW~-------~ssCPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~-~~~HA~~H~~~- 255 (356)
....|.|.++..++.+|. ...|+.|+... ......+.+|....+||+||+||+|||||| .++||++||++
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~-~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~ 81 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDN-KVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTP 81 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCT-TSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCccccccc-cccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCc
Confidence 456899999998888875 25699998753 223345678999999999999999999998 68999999999
Q ss_pred --cCCeeeEeCCCceEEEccCCceeecccccccCCceeee
Q 018432 256 --TQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEM 293 (356)
Q Consensus 256 --t~H~~al~l~t~~VwcY~cd~yVHrl~q~k~dgklvel 293 (356)
++|+++++++|.+||||+||+||+ ..++|.++++||+
T Consensus 82 ~~t~H~l~~~l~t~~vwCY~cd~~V~-~~~~~~l~~~v~~ 120 (126)
T 2i50_A 82 RSEPHCLVLSLDNWSVWCYVCDNEVQ-YCSSNQLGQVVDY 120 (126)
T ss_dssp CSSCCCEEEETTTCCEEETTTTEEEC-CCTTSHHHHHHHH
T ss_pred CCCCCcEEEECCCCeEEeCCCCcEEE-cCcchhHHHHHHH
Confidence 899999999999999999999998 5678888888886
No 3
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.86 E-value=4.9e-22 Score=165.85 Aligned_cols=63 Identities=38% Similarity=0.809 Sum_probs=61.1
Q ss_pred CCcccccCCCCceeeeccccceeccCCCCcHHhhhhhhcCCeeeEeCCCceEEEccCCceeec
Q 018432 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (356)
Q Consensus 218 ~~~C~~C~~~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~al~l~t~~VwcY~cd~yVHr 280 (356)
...|.+|+..+++|+||+||+|||||+.++||++||++++|+++++++|.+||||.||+|||+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCC
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEec
Confidence 567999999999999999999999999999999999999999999999999999999999986
No 4
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.82 E-value=6.5e-21 Score=155.92 Aligned_cols=62 Identities=35% Similarity=0.816 Sum_probs=59.2
Q ss_pred CCCcccccC-CCCceeeecc--ccceeccCCCCcHHhhhhhhcCCeeeEeCCCceEEEccCCcee
Q 018432 217 ERPTCSVCG-TVENLWVCLI--CGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278 (356)
Q Consensus 217 ~~~~C~~C~-~~~nlWiCL~--CG~vGCgr~~~~HA~~H~~~t~H~~al~l~t~~VwcY~cd~yV 278 (356)
..+.|.+|+ ..+|+|+||+ ||+|||||+.++||++||++++|+++++++|++||||.||+||
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 467899999 6779999999 9999999999999999999999999999999999999999998
No 5
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.81 E-value=1.4e-20 Score=155.05 Aligned_cols=65 Identities=28% Similarity=0.493 Sum_probs=58.8
Q ss_pred CCCCcccccCCCC----ceeeeccccceeccCC-CCcHHhhhhhhcCCeeeEeCC--CceEEEccCCceeec
Q 018432 216 DERPTCSVCGTVE----NLWVCLICGFVGCGRY-KEGHAVRHWKDTQHWYSLDLR--TQQIWDYVGDNYVHR 280 (356)
Q Consensus 216 ~~~~~C~~C~~~~----nlWiCL~CG~vGCgr~-~~~HA~~H~~~t~H~~al~l~--t~~VwcY~cd~yVHr 280 (356)
++.+.|.+|+..+ |||+||+||+|||||+ .++||++||++|+||+++.++ +.+||||+||+||+.
T Consensus 16 p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~ 87 (102)
T 2ida_A 16 PSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDL 87 (102)
T ss_dssp CSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEEC
T ss_pred CCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcEEEC
Confidence 4578899999987 8999999999999999 899999999999999776665 689999999999975
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.2e-21 Score=207.66 Aligned_cols=129 Identities=27% Similarity=0.440 Sum_probs=84.5
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccccccccccccccc----------cCCCCcccccCCCCceee
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWV 232 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~~----------~~~~~~C~~C~~~~nlWi 232 (356)
.+.++|.. |++|+...+.+|++ +++.++..|+.+|.+..||+|++... ++..+.|.+|+...|+|+
T Consensus 154 ~~~~~~~~--~~~~~~~~~~~i~~--~~~~~~~~~~~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~ 229 (854)
T 3ihp_A 154 GLGGLPDI--VRDRVTSAVEALLS--ADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWL 229 (854)
T ss_dssp CCTTSCHH--HHHHHHHHHHHHTC------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEE
T ss_pred CcccCChh--hHHHHHHHHHHHHh--cCCHHHHHHHHhhcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEE
Confidence 33455553 99999988888886 57899999999999989999999731 134578999999999999
Q ss_pred eccccceeccCCC------CcHHhhhhhhcCCeeeEeCCC-----ceEEEccCCceee-------cc-------cccccC
Q 018432 233 CLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYVH-------RL-------NQSKAD 287 (356)
Q Consensus 233 CL~CG~vGCgr~~------~~HA~~H~~~t~H~~al~l~t-----~~VwcY~cd~yVH-------rl-------~q~k~d 287 (356)
||+||+|||||+. ++||++||++++|+++++++| ++||||.||+||. +. ...|++
T Consensus 230 CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~ 309 (854)
T 3ihp_A 230 NLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTD 309 (854)
T ss_dssp ETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEECBCTTHHHHHHHTTCCC-------
T ss_pred EecCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCeeeCccHHHHHHHhCcccccccccc
Confidence 9999999999986 789999999999999999999 9999999999992 21 124677
Q ss_pred CceeeecC
Q 018432 288 GKLVEMNS 295 (356)
Q Consensus 288 gklvel~~ 295 (356)
..++|++.
T Consensus 310 k~~~el~~ 317 (854)
T 3ihp_A 310 KTMTELEI 317 (854)
T ss_dssp --------
T ss_pred hhhhhhhh
Confidence 77777643
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.46 E-value=3.2e-14 Score=142.89 Aligned_cols=60 Identities=23% Similarity=0.664 Sum_probs=56.6
Q ss_pred CCcccccCCC--CceeeeccccceeccCCCCcHHhhhhhhcCCeeeEeCCCceEEEccCCceee
Q 018432 218 RPTCSVCGTV--ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279 (356)
Q Consensus 218 ~~~C~~C~~~--~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~al~l~t~~VwcY~cd~yVH 279 (356)
.++|.+|+.. .++|+||+||++|||+ ++||..|+++++|++++++++++||||.||+||.
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~ 109 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIG 109 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEEC
T ss_pred CCCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcc
Confidence 4579999988 7999999999999997 8999999999999999999999999999999994
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.82 E-value=2.4e-09 Score=76.53 Aligned_cols=47 Identities=26% Similarity=0.713 Sum_probs=39.1
Q ss_pred CCCCCCCccccccCCCCcceeeec-CCCccchhhhhccc--cccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--VLSCQVCRFC 212 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~-C~H~FH~~Cl~kW~--~ssCPvCR~~ 212 (356)
.+..+|+||++.+..+. .+..++ |+|.||..|+.+|. ..+||+||..
T Consensus 3 ~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 3 DDGVECAVCLAELEDGE-EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCSCCCTTTCCCCCTTS-CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CCCCcCccCCccccCCC-ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 46679999999998754 355565 99999999999997 5789999974
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.80 E-value=2.5e-09 Score=76.31 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=40.9
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+..+|+||++.+......+..++|+|.||..|+.+|. ...||+||...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 45678999999997654557788999999999999997 57899999753
No 10
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=1.8e-09 Score=89.50 Aligned_cols=78 Identities=28% Similarity=0.545 Sum_probs=59.0
Q ss_pred CCCCCCCccccccCCC---CcceeeecCCCccchhhhhccc--cccccccccccc---------cCCCCcccccCCCC--
Q 018432 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ---------QDERPTCSVCGTVE-- 228 (356)
Q Consensus 165 ~elptCpICLe~ld~~---~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~~---------~~~~~~C~~C~~~~-- 228 (356)
.+..+||||++.+.+. ...++.++|+|.||..|+.+|. ..+||+||.... .++...|..|...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 3567899999998763 2334778999999999999996 578999998653 23456788887542
Q ss_pred -----ceeeeccccceecc
Q 018432 229 -----NLWVCLICGFVGCG 242 (356)
Q Consensus 229 -----nlWiCL~CG~vGCg 242 (356)
...+.+.|||+.|.
T Consensus 85 ~~~~~~~~~~~~CgH~fc~ 103 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCS 103 (133)
T ss_dssp HHHTTCCEEEETTSBEEEH
T ss_pred ccccCcceEeCCCCChhhH
Confidence 23477889988874
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=2.6e-09 Score=81.41 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=41.6
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
..+...|+||++.+.... .+..++|+|.||..|+.+|. +..||+||...
T Consensus 20 ~~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 356789999999998753 46778999999999999996 67899999865
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=83.11 Aligned_cols=49 Identities=27% Similarity=0.617 Sum_probs=36.9
Q ss_pred CCCCCCCccccccCC-----------CCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 165 TELPTCPICLERLDP-----------DTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~-----------~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+..+|+||++.+++ +...+....|+|.||..|+.+|. ..+||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 456778888888864 22223444699999999999997 57899999854
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.73 E-value=1.1e-08 Score=78.37 Aligned_cols=52 Identities=29% Similarity=0.584 Sum_probs=42.6
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--cccccccccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 214 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~~ 214 (356)
....+...|+||++.+.... .+..++|+|.||..|+.+|. ...||+||....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 34566789999999998753 45667999999999999996 578999998653
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.2e-08 Score=77.26 Aligned_cols=51 Identities=25% Similarity=0.633 Sum_probs=42.0
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--cccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 214 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~~ 214 (356)
...+...|+||++.+.... .+..++|+|.||..|+.+|. ...||+||....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 3456779999999998753 45667999999999999997 578999998653
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.70 E-value=9.9e-09 Score=76.73 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=41.0
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
..+...|+||++.+... ..+..++|+|.||..|+.+|. ...||+||...
T Consensus 11 ~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 35567999999999764 346778999999999999997 57899999865
No 16
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.69 E-value=5.4e-09 Score=83.10 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=41.2
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
..+..+|+||++.+..+. .+..++|+|.||..|+.+|. ..+||+||...
T Consensus 37 ~~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 346778999999998753 46778999999999999997 57899999854
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=7.9e-09 Score=76.66 Aligned_cols=53 Identities=26% Similarity=0.464 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCccccccCCC---CcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 161 PAGFTELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 161 ~~~~~elptCpICLe~ld~~---~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.....+...|+||++.+... ...+..++|+|.||..|+.+|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 34556788999999998753 1234678999999999999997 57899999754
No 18
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.61 E-value=1.1e-08 Score=83.87 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=37.3
Q ss_pred CCCCCccccccCCCC--------------cceeeecCCCccchhhhhccc-------ccccccccccc
Q 018432 167 LPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT-------VLSCQVCRFCH 213 (356)
Q Consensus 167 lptCpICLe~ld~~~--------------sgilt~~C~H~FH~~Cl~kW~-------~ssCPvCR~~~ 213 (356)
..+|||||+.|.... ..+..++|+|.||..||.+|. ...||+||...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 358999999986532 123367899999999999997 35899999865
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4.6e-08 Score=75.97 Aligned_cols=53 Identities=23% Similarity=0.511 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc-----cccccccccc
Q 018432 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (356)
Q Consensus 161 ~~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~-----ssCPvCR~~~ 213 (356)
...+.+..+||||++.+.........++|+|.||..|+.+|.. ..||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 3456778899999999987543356779999999999999962 5799999864
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=7.6e-08 Score=75.50 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=39.2
Q ss_pred CCCCCCCccccccCCCCcceeeecCC-----Cccchhhhhcccc----ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWTV----LSCQVCRFCHQ 214 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~-----H~FH~~Cl~kW~~----ssCPvCR~~~~ 214 (356)
.+...|+||++.++++. .+.++|+ |.||..||.+|.. .+||+||+...
T Consensus 13 ~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 56789999999987653 3457997 9999999999972 58999998653
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.55 E-value=3.2e-08 Score=81.60 Aligned_cols=48 Identities=19% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCCCCCCccccccCCCC--------------cceeeecCCCccchhhhhccc--cccccccccc
Q 018432 165 TELPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (356)
Q Consensus 165 ~elptCpICLe~ld~~~--------------sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~ 212 (356)
.+..+|+||++.++... ..++.++|+|.||..|+.+|+ ..+||+||..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 35678999999988541 125668999999999999997 6789999975
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=5.1e-08 Score=73.02 Aligned_cols=47 Identities=32% Similarity=0.731 Sum_probs=39.7
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--cccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 214 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~~ 214 (356)
.+.+...|+||++.+.. ..++|+|.||..|+.+|. ...||+||....
T Consensus 11 ~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 45667899999999875 567999999999999997 578999998653
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.53 E-value=2.9e-08 Score=74.24 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=40.6
Q ss_pred CCCCCCCccccccCCC---CcceeeecCCCccchhhhhccc--cccccccccccc
Q 018432 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 214 (356)
Q Consensus 165 ~elptCpICLe~ld~~---~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~~ 214 (356)
.+..+||||++.+.+. ...+..++|+|.||..|+.+|. ...||+||....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 5677999999998763 1234678999999999999997 578999998653
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=7.1e-08 Score=72.73 Aligned_cols=47 Identities=28% Similarity=0.505 Sum_probs=38.9
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
...+..+|+||++.+.. .+.++|+|.||..|+.+|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 34567899999999865 3556899999999999997 47899999864
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.51 E-value=3.6e-08 Score=71.95 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=39.0
Q ss_pred CCCCCCccccccCCC---CcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 166 ELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~---~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
+..+||||++.+... ...+..++|+|.||..|+.+|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 456899999998753 1234678999999999999997 57899999864
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.4e-08 Score=72.84 Aligned_cols=49 Identities=27% Similarity=0.438 Sum_probs=40.5
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
..+.+..+||||++.+.+. +..++|+|.||..|+.+|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred hhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 4456678999999999863 3445999999999999997 57899999865
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=7e-08 Score=71.44 Aligned_cols=48 Identities=19% Similarity=0.446 Sum_probs=38.5
Q ss_pred CCCCCCcccc-ccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 166 ELPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe-~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
+..+||||++ .+.......+.++|+|.|+..|+.+|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 4578999999 776654334567999999999999994 46799999865
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.46 E-value=6e-08 Score=72.10 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=38.0
Q ss_pred CCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
+..+||||++.+... ...++|+|.||..|+.+|. ...||+||...
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 456899999998753 4677999999999999997 57899999854
No 29
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.2e-07 Score=69.82 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=39.2
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc-----cccccccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~-----ssCPvCR~~~ 213 (356)
..+.+...||||++.+.. .+.++|+|.|+..|+.+|.. ..||+||...
T Consensus 15 ~~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HhCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 345677899999999875 34459999999999999973 3799999855
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.9e-07 Score=66.94 Aligned_cols=44 Identities=30% Similarity=0.786 Sum_probs=35.8
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc-----ccccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVC 209 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~-----~ssCPvC 209 (356)
..+.+..+||||++.+.+. +.++|+|.||..|+.+|. ...||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456788999999999864 336899999999999993 4678887
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=71.91 Aligned_cols=49 Identities=39% Similarity=0.644 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc---------cccccccccc
Q 018432 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---------LSCQVCRFCH 213 (356)
Q Consensus 161 ~~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~---------ssCPvCR~~~ 213 (356)
...+.+..+||||++.+.+. +.++|+|.|+..|+.+|.. ..||+||...
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SCCCCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred HhhcccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34566788999999999764 3458999999999999973 4799999865
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.38 E-value=1e-07 Score=81.09 Aligned_cols=43 Identities=30% Similarity=0.666 Sum_probs=36.4
Q ss_pred CCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 167 lptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.-+||||++.+.. .++++|+|.||..|+.+|. ..+||+||...
T Consensus 53 ~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred cCCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 4579999999975 3567999999999999997 57899999854
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.34 E-value=2.1e-07 Score=70.91 Aligned_cols=48 Identities=17% Similarity=0.409 Sum_probs=39.1
Q ss_pred CCCCCCCCCCccccccCCCCcceeeec-CCCccchhhhhcccc----cccccccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWTV----LSCQVCRFCH 213 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~-C~H~FH~~Cl~kW~~----ssCPvCR~~~ 213 (356)
..+.+..+||||++.+... ++++ |+|.|+..|+.+|.. ..||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred ccCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3456678999999999863 4467 999999999999973 4899999853
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.34 E-value=6.5e-08 Score=81.31 Aligned_cols=47 Identities=19% Similarity=0.536 Sum_probs=1.0
Q ss_pred CCCCCCccccccCCCC--------------cceeeecCCCccchhhhhccc--cccccccccc
Q 018432 166 ELPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (356)
Q Consensus 166 elptCpICLe~ld~~~--------------sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~ 212 (356)
+..+|+||++.++... ..++.++|+|.||..|+.+|+ ..+||+||..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp CC-------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 4568999999987521 123346899999999999998 5789999974
No 35
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.2e-07 Score=70.72 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=38.7
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
...+...||||++.+... +.++|+|.||..|+.+|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred cCCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 345567999999999753 457999999999999997 57899999854
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.1e-07 Score=67.34 Aligned_cols=44 Identities=30% Similarity=0.735 Sum_probs=35.7
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc-----cccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVC 209 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~-----ssCPvC 209 (356)
..+.+..+||||++.+.+. +.++|+|.|+..|+.+|.. ..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456788999999999863 4459999999999999973 368887
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=4.8e-07 Score=69.29 Aligned_cols=50 Identities=38% Similarity=0.593 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--------ccccccccccc
Q 018432 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCH 213 (356)
Q Consensus 160 ~~~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--------~ssCPvCR~~~ 213 (356)
....+.+..+||||++.+... +.++|+|.|+..|+.+|. ...||+||...
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred HHHhCccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 334566788999999998764 356899999999999995 24799999865
No 38
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.7e-07 Score=67.70 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=38.6
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
.+.+..+||||++.+.+.+ .++|+|.|+..|+.+|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPK----QTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp SCCCCEECTTTCCEESSCC----CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred cCCcCCCCCCCChHhcCee----ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 3456779999999997642 35999999999999997 35799999865
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.27 E-value=5.2e-07 Score=70.28 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=38.7
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
.+.+..+||||++.+......+...+|+|.|+..|+.+|. ...||+||...
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567889999999886432223334599999999998874 56899999865
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=7.4e-07 Score=68.23 Aligned_cols=49 Identities=45% Similarity=0.726 Sum_probs=39.7
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--------cccccccccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCHQ 214 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--------~ssCPvCR~~~~ 214 (356)
..+.+..+||||++.+... ..++|+|.|+..|+.+|. ...||+||....
T Consensus 14 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4456788999999999763 345899999999999995 357999998653
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.20 E-value=6.7e-07 Score=68.20 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=38.3
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
+.+.-.||||++.|.+. ++++|+|+|+..|+.+|. ...||+||...
T Consensus 5 ~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp CSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 45677999999999763 446899999999999997 35799999865
No 42
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.19 E-value=4.8e-07 Score=72.94 Aligned_cols=47 Identities=30% Similarity=0.624 Sum_probs=38.6
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--c-cccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--V-LSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~-ssCPvCR~~~ 213 (356)
+.+..+||||++.+... +..++|+|.|+..|+.+|. . ..||+||...
T Consensus 19 l~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 35677999999999752 3338999999999999997 3 5899999865
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.18 E-value=4.2e-07 Score=72.64 Aligned_cols=46 Identities=24% Similarity=0.632 Sum_probs=37.7
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+..+||||++.+... +..++|+|.||..|+.+|. ...||+||...
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 3467999999999863 3345899999999999997 46899999854
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.13 E-value=6.3e-07 Score=72.81 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=37.7
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+..+||||++.+.+. +.+.+|+|+|+..|+.+|. ...||+||...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 4677999999999752 3334999999999999997 47899999854
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.13 E-value=7.5e-07 Score=74.12 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=37.7
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---cccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQ 214 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~~ 214 (356)
.+..+||||++.+... ++++|+|+|+..|+.+|. ...||+||....
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3456899999999863 456999999999999996 248999998653
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=69.05 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=38.6
Q ss_pred CCCCCCCCCccccccCCCCcceeeec-CCCccchhhhhccc----ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT----VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~-C~H~FH~~Cl~kW~----~ssCPvCR~~~ 213 (356)
.+.+..+||||++.|.+. ++++ |+|+|+..|+.+|. ...||+||...
T Consensus 9 ~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 456678999999999863 4567 99999999999996 25899999854
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=1.3e-06 Score=72.21 Aligned_cols=46 Identities=24% Similarity=0.485 Sum_probs=38.6
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhcccccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
.+..+||||++.+... +.+.+|+|+|+..|+.+|....||+||...
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 4578999999999763 233389999999999999888899999854
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=71.83 Aligned_cols=46 Identities=26% Similarity=0.481 Sum_probs=37.7
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
..+..+||||++.+... ++++|+|+|+..|+.+|. ...||+||...
T Consensus 12 ~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 34567899999998763 455999999999999997 35899999854
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.08 E-value=2e-06 Score=62.22 Aligned_cols=45 Identities=16% Similarity=0.376 Sum_probs=37.1
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccccccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ 214 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~~ 214 (356)
.+..+|+||++.+... ..++|+|+|+..|+.+|. ..||+||....
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~-~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEASG-MQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSSS-SSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccCC-CCCCcCCcEee
Confidence 4567899999998863 456899999999999974 58999998653
No 50
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.06 E-value=1e-06 Score=76.73 Aligned_cols=48 Identities=27% Similarity=0.553 Sum_probs=38.4
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
.+.+..+||||++.+... +.+.+|+|.||..|+.+|. ...||+||...
T Consensus 50 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp CCHHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred hCCCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 344566999999999863 4445999999999999996 45799999854
No 51
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.02 E-value=1.4e-06 Score=70.54 Aligned_cols=44 Identities=36% Similarity=0.705 Sum_probs=36.2
Q ss_pred CCCCCCccccccCCCCcceeeecCCCccchhhhhcccc-----cccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~-----ssCPvCR~~~ 213 (356)
+...||||++.+... +.++|+|.|+..|+.+|.. ..||+||...
T Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 20 KILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 456899999998764 3469999999999999973 2799999855
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.97 E-value=1.6e-06 Score=71.52 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=39.6
Q ss_pred CCCCCCCccccccCCC---CcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~---~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+...|+||++.+.+. ...+..++|+|.||..|+.+|. ..+||+||...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 4567899999998753 1224677999999999999997 57899999865
No 53
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=4.1e-06 Score=64.91 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=37.5
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--c--ccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--V--LSCQVCRFC 212 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~--ssCPvCR~~ 212 (356)
..+..|+||.+.+.. ++.-..|+|.||..|+.+|. . ..||+||..
T Consensus 13 ~~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 347899999999985 34545899999999999997 2 679999975
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.93 E-value=3e-06 Score=73.49 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=37.7
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc---ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---LSCQVCRFCHQ 214 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~---ssCPvCR~~~~ 214 (356)
.+..+||||++.+... ++++|+|+|+..|+.+|.. ..||+||....
T Consensus 76 ~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 3456899999999763 4479999999999999973 47999998653
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.90 E-value=4.3e-06 Score=69.09 Aligned_cols=47 Identities=30% Similarity=0.465 Sum_probs=38.5
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
.+.+..+||||++.+... +.++|+|.|+..|+.+|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 445667999999999763 446899999999999997 24899999865
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.88 E-value=6.3e-06 Score=62.89 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=36.3
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCc-cchhhhhcccccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
.+..+|+||++.+.+ .+.++|+|. |...|+.+| ..||+||...
T Consensus 22 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 65 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVI 65 (74)
T ss_dssp HHHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC--SBCTTTCCBC
T ss_pred ccCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC--ccCCCcCcCc
Confidence 346789999999865 466799999 999999999 6899999754
No 57
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.86 E-value=4.6e-06 Score=68.40 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=53.1
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---cccccccccccccCCCCcccccCCCCc-eeeeccccce
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVEN-LWVCLICGFV 239 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~~~~~~~~C~~C~~~~n-lWiCL~CG~v 239 (356)
+.+..+||||++.+.+. +.++|+|.|+..|+.+|. ...||+||..........- .-..... ..+-+.|.+-
T Consensus 20 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~-~~~l~~~i~~l~v~C~~~ 94 (116)
T 1rmd_A 20 FVKSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP-VKSFLNILNSLMVKCPAQ 94 (116)
T ss_dssp HHHHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC-CHHHHHHHHHCEEECCST
T ss_pred ccCCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc-HHHHHHHHHHhcCCCCCC
Confidence 34567999999999763 446999999999999997 3589999986532211000 0000000 1133457777
Q ss_pred eccCCC-CcHHhhhhhh
Q 018432 240 GCGRYK-EGHAVRHWKD 255 (356)
Q Consensus 240 GCgr~~-~~HA~~H~~~ 255 (356)
||+... .+....|.++
T Consensus 95 gC~~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 95 DCNEEVSLEKYNHHVSS 111 (116)
T ss_dssp TCCCEEEHHHHHHHHHT
T ss_pred CCcchhhHhHHHHHHHH
Confidence 887643 2444556543
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.70 E-value=7.3e-06 Score=70.38 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc---cccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---LSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~---ssCPvCR~~~ 213 (356)
.+.-+||||++.+.+. ++++|+|.|+..|+.+|.. ..||+||...
T Consensus 29 ~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4566999999999864 4569999999999999973 5899999853
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.69 E-value=2.9e-05 Score=60.95 Aligned_cols=46 Identities=7% Similarity=-0.111 Sum_probs=38.6
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
+-+.-.||||++.|.+. ++++|+|+|...||.+|. +.+||+||...
T Consensus 11 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CchheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 34567999999999874 556799999999999997 57899999754
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.63 E-value=5.1e-05 Score=61.27 Aligned_cols=46 Identities=11% Similarity=-0.128 Sum_probs=38.4
Q ss_pred CCCCCCCCccccccCCCCcceeeecCC-Cccchhhhhccc--ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICD-HSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~-H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
+-+.-.||||++.|.+. ++++|+ |+|...||.+|. +.+||+||...
T Consensus 19 ~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred CcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 34456999999999874 556899 999999999997 57899999765
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.62 E-value=3.4e-05 Score=62.53 Aligned_cols=46 Identities=7% Similarity=-0.114 Sum_probs=38.5
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
+-+.-.||||++.|.+. ++++|+|+|...||.+|. +.+||+||...
T Consensus 26 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp CSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred CcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 34566999999999874 556799999999999997 57899999865
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.59 E-value=2.2e-05 Score=78.12 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=36.6
Q ss_pred CCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 167 lptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
...|+||++.+.. .+.++|+|.||..|+..|. ...||+||...
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 3689999999864 4667999999999999995 47899999854
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=4e-05 Score=61.04 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=36.1
Q ss_pred CCCCCCCCCccccccCCCCcceeee-cCCCccchhhhhcccc--------ccccc--ccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWTV--------LSCQV--CRF 211 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~-~C~H~FH~~Cl~kW~~--------ssCPv--CR~ 211 (356)
+..+.-.||||++.|.+. +++ .|+|+|...||.+|.. ..||+ |+.
T Consensus 3 ~~~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SCSSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred CCCcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 345667899999999874 445 4999999999999973 38999 874
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.48 E-value=5.5e-05 Score=69.73 Aligned_cols=46 Identities=11% Similarity=-0.053 Sum_probs=37.7
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
..+.-.||||++.|.+. ++++|+|+|...||.+|. ..+||+||...
T Consensus 205 ~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34566899999999874 556899999999999997 33599999755
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=4.9e-05 Score=57.85 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=34.5
Q ss_pred CCCCCCccccccCCCCcceeeecCCCc-cchhhhhcccccccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
+..+|+||++.+.+ .+.++|+|. |...|+.++ ..||+||...
T Consensus 24 ~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 66 (75)
T 2ecg_A 24 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVI 66 (75)
T ss_dssp HHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC--SBCTTTCCBC
T ss_pred CCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC--CCCccCCcee
Confidence 45689999999865 355799999 999999766 5899999854
No 66
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.34 E-value=7.7e-05 Score=65.01 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=39.1
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---cccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQ 214 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~~ 214 (356)
.+.+.-+||||++.+... +.++|+|.|...|+.+|. ...||+||....
T Consensus 14 ~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 345667999999999863 446999999999999997 248999998653
No 67
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.33 E-value=5.6e-05 Score=56.13 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=35.3
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCc-cchhhhhccc--ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+...|+||+++..+. .++..+|+|. |...|+.+|. +..||+||...
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 3566899999987652 1223399999 6779999997 46799999743
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.31 E-value=6.3e-05 Score=73.90 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=36.3
Q ss_pred CCCCCCccccccCCCCccee-----eecCCCccchhhhhcccc-------------cccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGIL-----STICDHSFQCSCTAKWTV-------------LSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgil-----t~~C~H~FH~~Cl~kW~~-------------ssCPvCR~~~ 213 (356)
....|+||++.+.++. .+. +..|+|.||..|+.+|.. ..||.||...
T Consensus 307 ~~~ECaICys~~l~~g-~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG-EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp SCCSCSSSCCSSCTTC-CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CCccCcccceeecCCC-CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 4668999999987632 122 458999999999999972 3699999754
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.29 E-value=0.00013 Score=56.50 Aligned_cols=42 Identities=33% Similarity=0.516 Sum_probs=35.2
Q ss_pred CCCCCCccccccCCCCcceeeecCCCc-cchhhhhcccccccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
+...|+||++.... .+.++|+|. |...|+.+|. .||+||...
T Consensus 17 ~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQLQ--SCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTCS--BCTTTCCBC
T ss_pred CCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhcC--cCCCCCchh
Confidence 45689999998764 567799999 9999999985 899999854
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.28 E-value=7.3e-05 Score=55.30 Aligned_cols=43 Identities=30% Similarity=0.734 Sum_probs=33.1
Q ss_pred CCCCCCccccccCCCCcceeeecCC--C---ccchhhhhccc----cccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICD--H---SFQCSCTAKWT----VLSCQVCRFC 212 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~--H---~FH~~Cl~kW~----~ssCPvCR~~ 212 (356)
+.+.|.||++..++ . +..||. + .||..|+.+|. +.+||+|++.
T Consensus 5 ~~~~CrIC~~~~~~--~--l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELGN--E--RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECSC--C--CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCEeEEeecCCCC--c--eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 56789999997443 2 346765 4 79999999996 4689999974
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.23 E-value=0.00015 Score=71.03 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=36.7
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCc-cchhhhhcccccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
.+..+|+||++.+.. .+.++|+|. |+..|+.+| ..||+||...
T Consensus 293 ~~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~--~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL--RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC--SBCTTTCCBC
T ss_pred cCCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC--CcCCCCCCCc
Confidence 456799999999865 466799999 999999999 6899999854
No 72
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.20 E-value=6.8e-05 Score=55.51 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=35.9
Q ss_pred CCCCCCccccccCCCCcceeeecCCCc-cchhhhhccc--ccccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
....|+||+++..+. .++..+|+|. |...|..+|. +..||+||...
T Consensus 6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 356899999987653 2344599998 9999999986 45899999753
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.99 E-value=0.00019 Score=56.68 Aligned_cols=47 Identities=19% Similarity=0.437 Sum_probs=34.1
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc----------ccccc--cccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV----------LSCQV--CRFC 212 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~----------ssCPv--CR~~ 212 (356)
.+.-+|+||++.+.... .+...+|+|.|...|+.++.. ..||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45678999999987642 223347999999999987741 36877 7764
No 74
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00038 Score=65.94 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=39.2
Q ss_pred CCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccc----ccccc--ccccc
Q 018432 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV----LSCQV--CRFCH 213 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~----ssCPv--CR~~~ 213 (356)
.+..+.-+||||++.|.+. +....|+|+|...||.+|.. ..||+ ||...
T Consensus 176 ~~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred cCCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 3557788999999999874 33458999999999999862 47999 98744
No 75
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.96 E-value=0.00028 Score=63.20 Aligned_cols=45 Identities=11% Similarity=-0.072 Sum_probs=37.1
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc---ccccccccccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~ 213 (356)
-+.-.||||++.|.+. ++++|+|+|...||.+|. +.+||+||...
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 4566899999999874 555999999999999997 24699999754
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.0042 Score=47.58 Aligned_cols=70 Identities=7% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|-.+|..+|-.||..+++.+ .|..++|+++..-.++-.+.++|.+.+.|+.-.. +||..|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 3456889999999999999999999998 7999999996322346689999999999999999 99998864
No 77
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00075 Score=50.73 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=35.5
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCc-cchhhhhcccccccccccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~-FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
..+...|+||++.... ++.++|+|. |...|+.+. ..||+||...
T Consensus 12 ~~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~--~~CP~CR~~i 56 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF--QQCPMCRQFV 56 (68)
T ss_dssp CCCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC--SSCTTTCCCC
T ss_pred CCCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC--CCCCCCCcch
Confidence 3557799999998654 577899999 999999753 5899999854
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.62 E-value=0.011 Score=44.51 Aligned_cols=72 Identities=7% Similarity=0.153 Sum_probs=58.1
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...+..|.|=.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|..-...+||..|..
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999999999999999998765 3489999998531 1346689999999999999999999988764
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.58 E-value=0.014 Score=44.49 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=60.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
..+..|.|=.+|..+|-.||..+++.+ ..|..++++++.+ .++-.+.++|.+.+.|+.-...+||..|+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~g-~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKMENG-KSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEESSS-CEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEccCC-CcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356889999999999999999998764 4588899998543 3566899999999999999999999998753
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.51 E-value=0.021 Score=44.66 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=60.9
Q ss_pred CCCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 59 QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 59 ~~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+......|.|-.+|..++-.||..++..+ . |..++|+++.. -.++-.+.++|.+.+.|+.-. .+||..|..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 3445567889999999999999999999998 4 99999998542 124568999999999999999 899988763
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.02 Score=44.79 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=60.7
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|-.+|..+|-.||..+++.+ ..|..++|+++.. .++-.+.++|.+.+.|+.-...+||..|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTT-TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCC-CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3457889999999999999999998765 4588999998654 357789999999999999999999998864
No 82
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.38 E-value=0.068 Score=41.66 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=59.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..++-.||..++..+- .|..++|+++..-.++-.+.++|.+.+.|+.-...+||+.|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 468899999999999999999987753 3999999986422346689999999999999999999998865
No 83
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.029 Score=42.95 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=59.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..++-.||..++..+- .|..++++++.. -.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999987653 589999998532 1245689999999999999999999998864
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.32 E-value=0.023 Score=43.53 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=60.4
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|-.+|..++-.||..++..+ ..|..++|+++..-.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA-GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3457889999999999999999998775 35888999985432346689999999999999999999998763
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.30 E-value=0.035 Score=43.32 Aligned_cols=70 Identities=6% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..+++.+- .|..++++++.+ .++-.+.++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFG-TITSAKVMMEGG-RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTS-CEEEEEEEECSS-SEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcCCC-CcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3567899999999999999999987653 489999998633 457789999999999999999999999864
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.25 E-value=0.039 Score=43.14 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...+..|.|-.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|..-...+||..|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 3457889999999999999999998765 4688999998532 1246689999999999999999999998874
No 87
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.24 E-value=0.0015 Score=53.28 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=47.4
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhhccc---cccccccccccccCCCCcccccCCCCceeeeccccceeccCC
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 244 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~---~ssCPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG~vGCgr~ 244 (356)
-|+.|--++.. -...+||.|.|..+|...|. +.+||.|+...+.. ..+.. +++|||-+ ..||.|.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV-----e~~~~-~~if~C~~--~~~Ckrt 70 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI-----EQCTR-GSLFMCSI--VQGCKRT 70 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE-----EEEEG-GGCCCCCC--CCCCCCC
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee-----EEecc-CCEEECCC--CCCHHHH
Confidence 47788777653 13578999999999999995 67999999754321 12333 88999743 7899985
No 88
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.23 E-value=0.026 Score=45.75 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=60.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.....|.|=.+|..+|-.||..+++.+- .|..++|+++..-.++-.+.++|.+.++|+.-...+||..|+.-
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHG-PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSS-CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999987763 48999999865323566899999999999999999999998653
No 89
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.028 Score=43.61 Aligned_cols=70 Identities=16% Similarity=0.326 Sum_probs=59.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..+|-.||..+++.+ ..|..++++++..-.++-.+.++|.+.+.|+.-...+||..|+.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46779999999999999999998775 35899999986522345689999999999999999999998864
No 90
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.21 E-value=0.021 Score=45.13 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=60.1
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+...+..|.|=.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|..-...+||..|+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34467889999999999999999998775 4588999987531 1245689999999999999999999998863
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.21 E-value=0.031 Score=42.67 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..++-.||..+++.+ ..|..++++++... .++-.+.++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT-SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457889999999999999999998775 35889999985421 346689999999999999999999998863
No 92
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.19 E-value=0.036 Score=44.27 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
+...+..|.|=.+|..+|-.||..+++.+ ..|..++++++... .++-.+.++|.+.+.|..-...+||..|...
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTT-SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34467889999999999999999998765 35899999985321 2356899999999999999999999988753
No 93
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.16 E-value=0.044 Score=43.60 Aligned_cols=73 Identities=8% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+......|.|=.+|..++-.||..++..+ ..|..++|+++.. -.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33467889999999999999999998765 3489999998531 2346689999999999999999999988764
No 94
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.017 Score=43.46 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=57.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.+..|.|-.+|..++-.||..++..+ ..|..++++++.. -.++-.+.++|.+.++|+.-...+||+.|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 46789999999999999999988765 4688999998532 123557999999999999999999999875
No 95
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.15 E-value=0.0015 Score=48.16 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=35.6
Q ss_pred CCCCccccccCCCCcceeeecCCCccchhhhhccc--ccccccccccc
Q 018432 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 168 ptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
-.|||+++.|.+. +++.+++|+|...|+.+|. +.+||+++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 3699999999964 3444899999999999997 56799999755
No 96
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.13 E-value=0.027 Score=44.14 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=60.7
Q ss_pred CCCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC--CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 59 QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 59 ~~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~--~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.|......|.|-.+|..++-.||..+++.+- |..++|+++... .++-.+.++|.+.+.|+.-. .+||..|..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34445678899999999999999999999884 999999986421 34567999999999999999 999998754
No 97
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.08 E-value=0.029 Score=43.83 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..++..+ ..|..++|+++.. -.++-.+.++|.+.+.|+.-...+||..|+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456889999999999999999999775 3588999988532 1245689999999999999999999999864
No 98
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.043 Score=43.53 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=59.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|=.+|..++-.||..+++.+ ..|..++|+++..-..+-.+.++|.+.+.|+.-...+||..|+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA-GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 346789999999999999999998765 36889999985432346689999999999999999999998863
No 99
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.035 Score=43.30 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=59.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCc-CCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR-FSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~-Fns 134 (356)
.+..|.|=.+|..+|-.||..+++.....|..++|+++..-.++-.+.+.|.+.+.|+.-...+||.. |+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 46779999999999999999998873456899999986422356689999999999999999999988 765
No 100
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.04 E-value=0.062 Score=42.64 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=59.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..+|-.||..++..+- .|..++|+++..-.++-.+.++|.+.+.|+.-...+||+.+..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 467899999999999999999987653 4899999986422346689999999999999999999999854
No 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.03 E-value=0.069 Score=41.35 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=60.4
Q ss_pred CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeE--------EEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCC
Q 018432 60 NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--------LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGK 130 (356)
Q Consensus 60 ~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~--------iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~ 130 (356)
.+......|.|=.+|..++-.||..+++.+- .|.. ++++++.. -.++-.+.++|.+.+.|+.-...+||.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445678899999999999999999998753 4677 88988522 134668999999999999999999999
Q ss_pred cCCC
Q 018432 131 RFSP 134 (356)
Q Consensus 131 ~Fns 134 (356)
.|..
T Consensus 87 ~~~g 90 (99)
T 2la6_A 87 EFSG 90 (99)
T ss_dssp BSSS
T ss_pred EeCC
Confidence 8864
No 102
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.029 Score=42.83 Aligned_cols=71 Identities=14% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..++..+ ..|..++++++.. -.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY-GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT-SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 356789999999999999999998775 3488999988532 1235579999999999999999999998863
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.97 E-value=0.043 Score=42.77 Aligned_cols=69 Identities=7% Similarity=0.190 Sum_probs=59.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|-.+|..++-.||..+++.+ ..|..++|+++.. .++-.+.++|.+.+.|+.-...+||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEECCCC-SSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-CCEeEEEEEecCC-CCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 456889999999999999999988664 3588999999654 35778999999999999999999999876
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.94 E-value=0.046 Score=42.82 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=59.9
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|-.+|..+|-.||..++..+ ..|..++|+++..-..+-.+.++|.+.+.|..-...+||..|..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3457889999999999999999998764 35889999986422346689999999999999999999998864
No 105
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.93 E-value=0.031 Score=41.80 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=58.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..++-.||..+++.+ ..|..++++++... .++-.+.++|.+.++|..-...+||..|+.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcc-CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999999999999999998765 36889999885321 235579999999999999999999998863
No 106
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.91 E-value=0.052 Score=42.43 Aligned_cols=71 Identities=10% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec---CCCCcceEEEEEeCChhhHHHHHhhh-cCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN---DAMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~---~~~~~~ymvLikF~s~~~A~eF~~~~-ng~~Fnsl 135 (356)
.....|.|-.+|..++-.||..+++.+- .|..++|+++ .+ .++-.+.++|.+.+.|+.-...+ ||..|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTG-AHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSC-SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccC-CeEEEEEecCCCCCC-CcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4578899999999999999999987653 5889999886 22 34668999999999999999999 89988743
No 107
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.88 E-value=0.043 Score=43.65 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...+..|.|-.+|..+|-.||..+++.+ ..|..++++++.. ++-.+.++|.+.++|..-...+||..|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNTPE--TRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECSTT--TTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCC--CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999999999999999998764 4588999998542 36679999999999999999999999864
No 108
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.86 E-value=0.052 Score=40.30 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=56.6
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 66 ~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..|.|-.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.++|+.-...+||..|+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 70 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 70 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 458899999999999999998765 4689999998532 1346689999999999999999999998863
No 109
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.83 E-value=0.04 Score=42.58 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~-~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|=.+|..+|-.||..+++.+ ..|..++++++. .-.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY-GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56889999999999999999998765 358889998854 11245689999999999999999999998864
No 110
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.78 E-value=0.053 Score=42.07 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..++..+ ..|..++++++... .++-.+.++|.+.+.|..-...+||..|..
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH-SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356889999999999999999998765 35889999985321 235589999999999999999999999864
No 111
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.065 Score=41.75 Aligned_cols=71 Identities=7% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..++-.||..+++.+ ..|..++|+++.. -.++-.+.++|.+.+.|..-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF-GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT-CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 457889999999999999999988765 3588999998531 1346689999999999999999999998863
No 112
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.74 E-value=0.032 Score=44.52 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..+++.+ ..|..++++++.+ .++-.+.++|.+.+.|+.-...+||..|+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGT-CCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhc-CCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356789999999999999999998765 3588899998654 357789999999999999999999998864
No 113
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.73 E-value=0.036 Score=42.73 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=57.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+..|.|=.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|..-...+||..|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV-GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4678999999999999999998775 3588999998532 1346689999999999999999999998864
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.69 E-value=0.057 Score=40.39 Aligned_cols=66 Identities=8% Similarity=0.121 Sum_probs=55.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhh-cCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~-ng~~Fns 134 (356)
.....|.|-.+|..++-.||..+++.+- .|..++++++ +-.+.++|.+.+.|..-...+ ||..|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFG-EIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTS-CEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCC-CEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 3567899999999999999999987653 3899999983 337999999999999999987 8887764
No 115
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.66 E-value=0.073 Score=41.48 Aligned_cols=71 Identities=7% Similarity=0.048 Sum_probs=59.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 457889999999999999999998776 3588999988531 1245579999999999999999999998864
No 116
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.66 E-value=0.048 Score=43.46 Aligned_cols=70 Identities=9% Similarity=0.189 Sum_probs=58.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..++-.||..++..+ ..|..++|+++.. -.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPF-GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGG-SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999998765 3488999998541 2345689999999999999999999998763
No 117
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.60 E-value=0.048 Score=45.47 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=59.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC---CcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~---~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
++..|.|-.+|..+|-.||..++..+- .|..++++++... .++-.+.++|.+.++|+.....+||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 467899999999999999999987753 4999999986543 35668999999999999999999998874
No 118
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.60 E-value=0.11 Score=40.04 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=58.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.....|.|=.+|..++-.||..+++.+ ..|..++|+++.. -.++-.+.++|.+.++|+.-.. .||..|+..
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 356889999999999999999999775 4689999998532 1246689999999999999988 899988643
No 119
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.59 E-value=0.062 Score=42.32 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=58.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.++.|.|=.+|..+|-.||..+++.+ ..|..++++++..+ .++-.+.++|.+.++|+.-...+||..|..
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45779999999999999999998764 45999999985321 235578999999999999999999998864
No 120
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.55 E-value=0.062 Score=43.42 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=60.2
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
+...+..|.|-.+|..+|-.||..+++.+ ..|..++|+++.. -.++-.+.++|.+.+.|..-...+||..|+..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 33457889999999999999999998764 3688999988531 12355899999999999999999999998643
No 121
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.47 E-value=0.041 Score=41.28 Aligned_cols=70 Identities=6% Similarity=0.151 Sum_probs=58.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCC--cceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAME--DRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~--~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+.|.|-.+|..+|-.||..+++.+ ..|..++++++.... ++-.+.++|.+.++|+.-...+||..|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY-GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 35779999999999999999998764 368889998854211 45589999999999999999999998864
No 122
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.45 E-value=0.14 Score=39.90 Aligned_cols=71 Identities=11% Similarity=0.210 Sum_probs=58.6
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
+......|.|=.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|..-...+||..+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 44467889999999999999999988765 3488999988532 12456899999999999999999999886
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.43 E-value=0.071 Score=41.10 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=58.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccccccee-EEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-ELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~-~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.+..|.|=.+|..++-.||..++..+- .|. .++|+++.. -.++-.+.++|.+.+.|+.-...+||..|...
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTT-CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC-CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 468899999999999999999987653 366 899998532 12455799999999999999999999988654
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.43 E-value=0.051 Score=40.61 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=55.4
Q ss_pred cEEEEEecCCCC------CHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 66 TCIFVVAVPNYL------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 66 ~~lciLaVP~~m------s~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
+.|.|=.+|..+ |-.||..+++.+- .|..+++.+..+ .++-.+.++|.+.++|+.-...+||..|..-
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~i~~v~i~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC-CEEEEECCCBTT-BCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC-CeEEEEecCCCC-cEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 578899999988 6688888886653 488888887544 3466899999999999999999999998643
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.42 E-value=0.11 Score=40.27 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..++..+- .|..+++.++ +-.+.++|.+.+.|+.....+||..|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3567899999999999999999987753 5788888874 3379999999999999999999999864
No 126
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.41 E-value=0.074 Score=43.98 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=58.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..++-.||..+++.+ ..|..++++++... ..+-.+.++|.+.+.|+.-...+||..|+.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKY-GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTT-SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999998765 35889999985321 245689999999999999999999998864
No 127
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.39 E-value=0.073 Score=43.04 Aligned_cols=71 Identities=6% Similarity=0.018 Sum_probs=59.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..++-.||..+++.+ ..|..++|+++..-..+-.+.++|.+.+.|..-...+||..|..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTT-SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356889999999999999999998765 35889999985422346689999999999999999999998864
No 128
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.38 E-value=0.046 Score=41.88 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=57.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEE-EEeecC-CCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL-IFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~i-riir~~-~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..+|-.||..+++.+- .|..+ +|+++. .-.++-.+.++|.+.+.|+.-...+||..|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 367899999999999999999987753 37777 888852 12346689999999999999999999998863
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.068 Score=40.81 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..+++.+- .|..++++++ .+.++|.+.+.|+.-...+||..|..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYG-PVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTS-CCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4568899999999999999999987753 5888888873 79999999999999999999998863
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.35 E-value=0.064 Score=41.63 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=56.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..+++.+ -.|+++++..-..+-.+.++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC----SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 457889999999999999999998874 45577775322346689999999999999999999998863
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.068 Score=44.03 Aligned_cols=66 Identities=11% Similarity=0.223 Sum_probs=56.7
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 67 ~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.|.|-.+|..+|-.||..++..+ ..|.+++++++....++-.+.++|.+.++|......+||..+.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVG-GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE 67 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGG-SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEECCCCCcCCHHHHHHHHHhc-CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence 58899999999999999998765 3599999998654445668999999999999999999999885
No 132
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.33 E-value=0.18 Score=41.94 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=59.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..+|-.||.++++.+- .|..++++++..-.++-.+.++|.+.++|..-...+||+.+..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFG-QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCC-CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 467899999999999999999987753 3899999986432346689999999999999999999988764
No 133
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.33 E-value=0.066 Score=43.70 Aligned_cols=70 Identities=7% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|-.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|+.-...+||..|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356889999999999999999998765 4588899988521 134668999999999999999999998876
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.33 E-value=0.071 Score=43.96 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=57.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
++.|.|-.+|..+|-.||..+++.+- .|..++++++.. -.++-.+.++|.+.++|+.....+||..|..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 46799999999999999999987753 589999998541 1245679999999999999999999988864
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.32 E-value=0.042 Score=42.77 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
..+..|.|=.+|..++-.||..+++.+ ..|..++++++..-.++-.+.++|.+.+.|+.-.. ||..++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~ 74 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH 74 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC
Confidence 346789999999999999999998765 45889999986422356789999999999999888 554444
No 136
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.28 E-value=0.085 Score=41.55 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=58.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..++..+ ..|..++|.++. .++-.+.++|.+.+.|+.-...+|+..|+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNRR--GGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCSS--SSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECC--CCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346789999999999999999998775 358888887743 246689999999999999999999998763
No 137
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.25 E-value=0.051 Score=41.36 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..+|-.||..+++.+- .|.+++++++ .+.++|.+.+.|+.-...+||..|+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHS-CEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCC-CEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467799999999999999999887653 3899999873 68999999999999999999998863
No 138
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.24 E-value=0.033 Score=43.52 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=57.5
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC--CCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~--~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
......|.|=.+|..++-.||..+++.+- |..++|+++. .-.++-.+.++|.+.+.|+.-. .+||..|+..
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 34578899999999999999999999875 9999999853 1234568999999999999999 8999988653
No 139
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.15 E-value=0.048 Score=42.36 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=57.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
....|.|-.+|..++-.||..++..+ ..|..++|+++.. -.++-.+.++|.+.++|+.-...+||..|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46789999999999999999998775 4588888888522 124668999999999999999999999886
No 140
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.14 E-value=0.088 Score=42.00 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=58.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..++-.||..++..+ ..|..++|+++.. -.++-...++|.+.+.|+.-...+||..|..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356889999999999999999998764 3588999998532 1246689999999999999999999988763
No 141
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.14 E-value=0.073 Score=42.13 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee--------EEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE--------ELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~--------~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|-.+|..+|-.||..+++.+-. |. .++|+++.. -.++-.+.++|.+.+.|..-...+||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGV-VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSC-BCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC-EeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35688999999999999999999987643 44 688887521 134568999999999999999999999886
Q ss_pred C
Q 018432 134 P 134 (356)
Q Consensus 134 s 134 (356)
.
T Consensus 92 g 92 (113)
T 2cpe_A 92 G 92 (113)
T ss_dssp T
T ss_pred C
Confidence 3
No 142
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.13 E-value=0.04 Score=42.86 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
..+.|.|=.+|..++-.||..+++.+- .|..++++++.. -.++-.+.++|.+.+.|..-...+||..|..-
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 357799999999999999999987653 488899998531 13466899999999999999999999998643
No 143
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.13 E-value=0.065 Score=40.14 Aligned_cols=66 Identities=9% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc---c-------ceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI---D-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~---~-------~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
.....|.|=.+|..+|-.||..+++.+. . .|.++++.++ +-.+.++|.+.++|..-. .+||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 4567899999999999999999887762 3 6889988874 347999999999999999 9999987
Q ss_pred CC
Q 018432 133 SP 134 (356)
Q Consensus 133 ns 134 (356)
+.
T Consensus 78 ~g 79 (87)
T 2hzc_A 78 QG 79 (87)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.07 E-value=0.12 Score=44.12 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=59.2
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...+..|.|-.+|..+|-.+|..+++.+ ..|..++|+++... .++-.+.+.|.+...|..-...+||..|+.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999999998775 46899999985321 235689999999999999999999998864
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.089 Score=40.76 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=55.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.++.|.|=.+|..++-.||..+++.+ ..|..+++++. +-.+.++|.+.++|+.....+||..|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHYPE-----KGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 46889999999999999999998765 34888888852 3479999999999999999999998763
No 146
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.98 E-value=0.068 Score=41.12 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=58.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC----CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~----~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|=.+|..+|-.||..+++.+ ..|..++++++... .++-.+.++|.+.+.|+.-...+||..|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV-GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 35779999999999999999998765 35889999885321 346689999999999999999999998763
No 147
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=94.95 E-value=0.15 Score=38.25 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=56.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|-.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.++|+.-. .+||..|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 5679999999999999999998765 4589999998531 123557999999999999999 999998764
No 148
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.90 E-value=0.16 Score=40.47 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|-.+|..+|-.||..++..+ ..|..++|+++.. -.++-.+.++|.+.+.|+.....+|+ .|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF-GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT-SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 456889999999999999999998765 3489999998532 12456899999999999999999998 554
No 149
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.87 E-value=0.11 Score=41.75 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=58.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
++.|.|=.+|..+|-.||..+++.+ ..|..++|+++.+ .++-...++|.+.++|+.-...+||..+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4569999999999999999998765 4589999999654 346679999999999999999999998764
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.80 E-value=0.17 Score=42.55 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=59.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..+|-.||..++..+- .|..++|+++... .++-.+.++|.+.+.|+.-...+||..|..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568899999999999999999987653 4889999985421 245689999999999999999999998853
No 151
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.78 E-value=0.14 Score=39.65 Aligned_cols=68 Identities=6% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..+|-.||..++..+ ..++++++.. -.++-.+.++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 356789999999999999999998863 5788887432 1245689999999999999999999998763
No 152
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.78 E-value=0.12 Score=40.41 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=57.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC--CcceEEEEEeCChhhHHHHHhhhc--CCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLN--GKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~--~~~ymvLikF~s~~~A~eF~~~~n--g~~Fns 134 (356)
....|.|=.+|..+|-.||..+++.+-..|..+++++.+.. .++-.+.+.|.+.+.|..-...+| +..|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 46789999999999999999999887666999999832322 356789999999999999999995 466654
No 153
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.71 E-value=0.087 Score=42.18 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=57.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccce-eEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHV-EELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i-~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..+|-.||..|+..+ ..| ..++|+++..-.++-.+.++|.+.+.|+.-... ||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 346789999999999999999999887 556 778998854223466899999999999999887 8887754
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.67 E-value=0.1 Score=41.15 Aligned_cols=65 Identities=8% Similarity=0.154 Sum_probs=56.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..++-.||..+++.+- .|..++++++ +-.+.+.|.+.+.|..-...+||..|..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467899999999999999999887653 5889999984 3479999999999999999999998763
No 155
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.55 E-value=0.15 Score=39.81 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=57.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..++..+ ..|..++|+++.. -.++-.+.++|.+.+.|+..... ||..|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 456889999999999999999998765 3588999998532 13456899999999999999988 9888764
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.53 E-value=0.21 Score=41.29 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=58.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..++-.|+..+++.+ ..|..++++++.. -.++-.+.++|.+.++|..-...+||+.|..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKY-GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcC-CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 46789999999999999999998764 3588999998541 1235689999999999999999999999854
No 157
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.52 E-value=0.17 Score=40.71 Aligned_cols=69 Identities=9% Similarity=0.143 Sum_probs=57.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|+.-. .+||..|..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC-GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT-SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 35789999999999999999998765 3688999998521 134668999999999999999 899998864
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.52 E-value=0.099 Score=40.81 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=53.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
....|.|=.+|..+|-.||..+++.+ ..|..+++++. .+.++|.+.++|......+||..|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKLKD-------YAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEECSS-------CEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC-------EEEEEeCCHHHHHHHHHHHCCCccC
Confidence 45789999999999999999988764 34788888863 6899999999999999999999876
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.48 E-value=0.23 Score=40.76 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=58.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..++..||..+++.+ ..|..++++++... .++-.+.++|.+.++|..-...+||+.|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 45779999999999999999998764 35888999985421 235679999999999999999999999865
No 160
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.47 E-value=0.22 Score=40.76 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..++-.||..+++.+ ..|..++|+++... .++-.+.++|.+.+.|+.-...+||..|..
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHH-SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346789999999999999999988765 34899999985421 236689999999999999999999998864
No 161
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.45 E-value=0.15 Score=39.24 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=54.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.+..|.|-.+|..+|-.||..+++.+- .|..+++.++ +-.+.++|.+.+.|+.-...+||..|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFG-SIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTS-CEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 357799999999999999999987753 4888888874 337899999999999999999999886
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.43 E-value=0.14 Score=44.25 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=58.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.+..|.|-.+|..+|-.||..++..+ ..|.+++++++.. -.++-.+.++|.+.+.|......+||..|...
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPF-GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 45789999999999999999998775 3589999998531 12466899999999999999999999988643
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.35 E-value=0.18 Score=40.71 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=59.0
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhccccc--ceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHID--HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~--~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|=.+|..+|-.||..|+..+-. .|..++|+++..-.++-.+.++|.+.+.|+.-.. .||+.+..
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 345678999999999999999999988733 4889999985432346689999999999999988 89887753
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.33 E-value=0.14 Score=40.38 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=59.2
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccc--cceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHI--DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~--~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
......|.|-.+|..+|-.||..|++.+- ..|..++|+++..-.++-.+.++|.+.++|+.-.. .||..++.-
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 34578899999999999999999998863 34889999885432346689999999999999888 888887643
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.31 E-value=0.33 Score=37.03 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=54.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEE-EeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELI-FIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~ir-iir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..+|-.||..+++.+ ..|..++ ++++.. ..+ +.++|.+.+.|..-...+||..|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~-~~~--afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSE-TAV--VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSS-SEE--EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCC-CCE--EEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999988654 3488885 666432 223 9999999999999999999998864
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.28 E-value=0.2 Score=39.81 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=58.1
Q ss_pred CCccEEEEEecCCCCCHHHHH---HHhcccccceeEEEEeecCCC----CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFV---RFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l---~F~~~~~~~i~~iriir~~~~----~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..++-.||. .+++.+ ..|..++|+++... .++-.+.++|.+.++|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 346789999999999999999 776554 45889999885432 235789999999999999999999998763
No 167
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.27 E-value=0.18 Score=41.93 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=58.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~-~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..+|-.||..+++.+ ..|..++++++. .-.++-.+.++|.+.++|..-...+||..|+.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999998764 458999999863 11346689999999999999999999998863
No 168
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.27 E-value=0.15 Score=39.32 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCCccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l----~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|=.+|..++-.||. .+++.+ ..|..++|+++... +-.+.++|.+.+.|+.-...+||..|..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999998 555433 35999999985432 5579999999999999999999998863
No 169
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.26 E-value=0.26 Score=37.33 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=54.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
....|.|=.+|..+|-.||..+++.+- .|..+++.| -.+.++|.+.+.|+.-...+||..|+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYG-KVLECDIIK-------NYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSS-CEEEEEEET-------TEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 467899999999999999999987753 588888885 1689999999999999999999888643
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=94.25 E-value=0.083 Score=40.14 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+..|.|=.+|..++-.||..+++.+ .|..+++.+ ++-.+.++|.+.+.|+.-...+||..|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVDR-----NKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEEG-----GGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEeC-----CCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 5679999999999999999999998 788888853 45589999999999999999999998863
No 171
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.24 E-value=0.021 Score=53.07 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=36.2
Q ss_pred CCCCCCccccccCCCCcceeeecCCCccchhhhhccc----cccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~----~ssCPvCR~~ 212 (356)
.++.|.+|-+-.-. |+.-..|++.||..|+.+|. +..||.|+..
T Consensus 179 ~i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 48999999999875 45555599999999999996 4589999763
No 172
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.24 E-value=0.28 Score=38.39 Aligned_cols=71 Identities=6% Similarity=0.127 Sum_probs=58.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhc------CCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLN------GKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~n------g~~Fns 134 (356)
..+..|.|=.+|..++-.||..+++.+ ..|..++|+++... .++-.+.++|.+.+.|+.-...+| |..|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 346789999999999999999998765 35899999985321 246689999999999999999999 888764
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.29 Score=40.13 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=58.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..+|..||..+++.+ ..|..++++++.. -.++-.+.++|.+.++|..-...+||..|+.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 346789999999999999999998654 4588999998532 1346689999999999999999999998863
No 174
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.21 E-value=0.19 Score=38.83 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=55.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~-~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|-.+|..+|-.||..+++.+- ..|..+++.|. .+.++|.+.+.|..-...+||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g-------~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-------YAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS-------EEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC-------eEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3468899999999999999999998873 56778877652 7999999999999999999999886
No 175
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.20 E-value=0.15 Score=40.38 Aligned_cols=69 Identities=10% Similarity=0.236 Sum_probs=57.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..++-.||..++..+ ..|..++|+++... ..+-.+.++|.+.+.|+.-. .+||..|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 35789999999999999999998764 46899999975421 24568999999999999999 999998864
No 176
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=94.16 E-value=0.14 Score=37.22 Aligned_cols=65 Identities=8% Similarity=0.174 Sum_probs=52.5
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 68 lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
|.|=.+|..+|-.|+..+++.+ ..|..++++++.. ..++-.+.++|.+.++|+.-.. .||..|+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred EEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 5678899999999999998775 3488888888531 2346689999999999999876 88888764
No 177
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.14 E-value=0.063 Score=41.15 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=55.4
Q ss_pred CccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l----~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..++-.||. .+++.+ ..|..+++.++. .++-.+.++|.+.++|..-...+||..|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSRSL--KMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCHHH--HHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEcCC--CcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999 666553 358888887632 245579999999999999999999998853
No 178
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.12 E-value=0.3 Score=36.53 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|=.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|+.-... |+..++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~ 78 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD 78 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC
Confidence 356789999999999999999998665 4688999998532 12466899999999999998865 665543
No 179
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.12 E-value=0.17 Score=39.90 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=57.2
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
......|.|=.+|..+|-.||..++..+- .|..++|+++ -.+.++|.+.+.|+.-...+||+.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 34467899999999999999999987653 5899999985 279999999999999999999998865
No 180
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.08 E-value=0.26 Score=38.67 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeE-EEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE-LIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~-iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.....|.|=.+|...|-.||..|+..+-. |.. ++|+++..-.++-.+.++|.+.+.|+.-... |+..+..-
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCE-EEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-cceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 45688999999999999999999987643 444 8887753223456899999999999999988 88887654
No 181
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.04 E-value=0.12 Score=40.10 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=54.7
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 67 ~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.|.|=.+|..+|-.||..+++.+- .|..++++++ ++-.+.++|.+.++|+.-...+||..|+..
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYG-PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHC-CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 578889999999999999887653 5889999985 355899999999999999999999988643
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.04 E-value=0.13 Score=42.64 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=57.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+..|.|-.+|..+|-.||..++..+ ..|..++++++... .++-.+.++|.+.++|+.....+||..|..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAI-GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 4679999999999999999998765 35899999985321 245579999999999999999999998863
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.00 E-value=0.31 Score=42.10 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=58.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|-.+|..+|-.||..++..+ ..|..++++++... .++-.+.++|.+.++|..-...+||+.|..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAF-GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTS-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 4789999999999999999998775 46999999985321 235679999999999999999999999864
No 184
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.00 E-value=0.28 Score=38.91 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=57.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
....|.|-++|..+|-.||..+++.+- .|..++|+++..-.++-.+.+.|.+.++|..... .||..|+.-
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 357799999999999999999987653 5899999985432346689999999999999988 788887653
No 185
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.00 E-value=0.16 Score=41.01 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=56.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+...|.|=.+|...|-.||..|+..+ .|..++|+++..-..+-.+.++|.+.+.|+.-. ..|++.+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 45789999999999999999999988 789999998542223568999999999998887 678887653
No 186
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.82 E-value=0.35 Score=38.75 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=58.1
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|=.+|..++-.||..+++.+ ..|..++|+++..+ .++-.+.++|.+.++|+.-...+||+.|..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4679999999999999999988664 46999999986431 246679999999999999999999998864
No 187
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.81 E-value=0.3 Score=40.78 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..+++.+ ..|..++++++.. -..+-.+.++|.+.+.|..-...+||..|+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346889999999999999999988654 3588999998521 1346689999999999999999999998864
No 188
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=93.78 E-value=0.19 Score=38.23 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=54.9
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|=.+|..+|-.||..++..+- .|..++++++... .++-.+.++|.+.+.|+.-...+||..|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSC-BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 47899999999999999999998763 2555556653321 246689999999999999999999998864
No 189
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=93.76 E-value=0.11 Score=40.66 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=59.1
Q ss_pred CCccEEEEEecCC------CCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPN------YLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~------~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+-+.+|.|-.+|. .++-.+|..+++.+ ..|..++|+++.. -.++-...+.|.+.+.|..-...+||..|..
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~-G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA-GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT-SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc-CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 4478899999999 89999999988764 3688999998653 1345689999999999999999999999874
No 190
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=93.74 E-value=0.17 Score=38.23 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=54.7
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 67 ~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.|.|-.+|..++-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+ |..-...+||..|+..
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred EEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 57889999999999999887654 3588899998532 134668999999999 9999999999998753
No 191
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=93.67 E-value=0.25 Score=43.05 Aligned_cols=71 Identities=6% Similarity=0.018 Sum_probs=59.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..+|-.||..+++.+ ..|..++|+++..-.++-.+.++|.+.+.|..-...+||..|..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHT-SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 346889999999999999999988764 35889999885422345689999999999999999999998865
No 192
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.64 E-value=0.5 Score=36.52 Aligned_cols=64 Identities=8% Similarity=0.124 Sum_probs=51.5
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhh
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSN 126 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~ 126 (356)
......|.|-.+|..++-.||..+++.+ ..|..++|+++.. -.++-.+.++|.+.+.|..-...
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF-GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG-SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc-CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3456779999999999999999998765 3488999998532 13466899999999999988773
No 193
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.53 E-value=0.37 Score=37.98 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=55.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
....|.|=.+|..+|-.||..|+..+- +..++|+++..-.++-...++|.+.+.|+.-.. .|++.+..-
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN--PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC--CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 467899999999999999999998875 348999986422345589999999999999885 588887653
No 194
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.53 E-value=0.14 Score=42.62 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.....|.|=.+|..+|-.||..+++.+- .|..++|+++.. -.++-.+.++|.+.+.|+.-...+||..|...
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3467899999999999999999987653 588899987531 12455789999999999999999999998743
No 195
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=93.52 E-value=0.33 Score=41.25 Aligned_cols=70 Identities=6% Similarity=0.092 Sum_probs=56.5
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
......|.|-.+|..+|-.||..+++.+ ..|.+++++++... .++-.+.++|.+.++|...... |+..++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQW-GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 3467899999999999999999999875 34899999985321 2456899999999999999876 666554
No 196
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.46 E-value=0.39 Score=36.72 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=55.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..++-.||..+++.+- .|..++++++... ..+-.+.++|.+.+.|+.-...+||..|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999998762 2444555553221 246689999999999999999999998764
No 197
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=93.43 E-value=0.2 Score=38.13 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=55.7
Q ss_pred EEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 67 CIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 67 ~lciLaVP~~ms~~d~l~F~~~~~-~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.|.|=.+|..+|-.||..+++.+- ..|..++++++... .++-...+.|.+.++|+.-...+||..|..-
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 477889999999999999998773 37999999995321 3466899999999999999999999988753
No 198
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.23 E-value=0.094 Score=40.46 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=54.8
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhh-cCCcCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNL-NGKRFS 133 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~-ng~~Fn 133 (356)
+.+|.|=++|..+|-.||..+++.+-..|.+++|+++.. -.++-.+.++|.+.++|..-.... |+..|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~ 71 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL 71 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC
Confidence 467999999999999999999987755799999998532 235668999999999999887654 444443
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.23 E-value=0.4 Score=40.78 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=59.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~-~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..++-.||..+++.+ ..|..++++++. .-.++-.+.++|.+.+.|..-...+||..|+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB-SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc-CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346889999999999999999998765 358999999863 11246789999999999999999999998853
No 200
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=93.13 E-value=0.25 Score=39.63 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=56.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCCCcC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAE 138 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsle~e 138 (356)
....|.|-.+|..+|-.||..++..+- .|..++|+++ -.+.++|.+.+.|+.-...+||+.|+.-.-.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 356799999999999999999987653 5889999884 2799999999999999999999999865433
No 201
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=93.11 E-value=0.39 Score=37.64 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=57.1
Q ss_pred CCccEEEEEecCCCC------CHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYL------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~m------s~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.++.|.|-.+|..+ |-.+|..+++.+ ..|..++|.+..+ .++-.+.+.|.+.++|..-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~-G~v~~v~i~~~~g-~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF-GKITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG-SCEEEEECCCBTT-BSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC-CCEEEEEeeCCCC-CeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 346789999999988 678888887664 3488888887554 456689999999999999999999999874
No 202
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.96 E-value=0.38 Score=41.09 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=58.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccccc-ceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~-~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+...|.|=.+|..+|-.||..+++.+-. .|..++|+++... .++-...++|.+.++|+.-...+||..|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5678999999999999999999877643 7999999985321 235589999999999999999999998764
No 203
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.94 E-value=0.61 Score=35.74 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..+|-.||..+++.+-. |. ++++.. .++-.+.++|.+.+.|..-...+||..|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGS-VP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTC-CC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCC-EE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45678999999999999999999877632 33 456653 234579999999999999999999999875
No 204
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=92.91 E-value=0.41 Score=39.80 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee--EEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE--ELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~--~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+...|.|=.+|...|-.||..|+..+ .|. .++|+++..-.++-...++|.+.+.|+.-... |++.+..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 456789999999999999999999998 566 89998753222356899999999999988876 6666653
No 205
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.88 E-value=0.49 Score=39.30 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=57.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..+++.+ ..|..++++++ ++-...++|.+.+.|..-...+||..|..
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYY-GPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHH-SCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh-CCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346889999999999999999988765 35899999985 35589999999999999999999998864
No 206
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=92.87 E-value=0.29 Score=41.19 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccc--eeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDH--VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~--i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
......|.|=.+|...|-.||..|+..+-.. |..++|+++..-.++-...++|.+.++|+.-.. .||+.++.-
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 3457889999999999999999999887442 889999985432345689999999999999888 899887643
No 207
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=92.79 E-value=0.33 Score=38.58 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=54.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..+|-.||..+++.+- .|..+++++ -.+.++|.+.++|..-...+||..|+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~k-------g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFG-PMKEVKILN-------GFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEET-------TEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568899999999999999999987653 478888883 279999999999999999999998853
No 208
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=92.75 E-value=0.44 Score=37.47 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCCCccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 61 PNSRSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~-ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
|...+..|.|=.+|.. ++-.||..+++.+- .|..+++ ++-.+.++|.+.+.|+.....+||..|+.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYG-RVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGS-CCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3334678999999999 99999999987653 4777777 23379999999999999999999998864
No 209
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=92.68 E-value=0.21 Score=38.15 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=53.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|..+|-.||..+++.+ -.+++++..+ .++-.+.++|.+.++|..-...+||..+..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCEEETT-EEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357889999999999999999999885 3344443333 356689999999999999999999988753
No 210
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=92.56 E-value=0.43 Score=40.90 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=57.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.+..|.|-.+|..++-.||..+++.+-..|..+++++++ +-.+.++|.+.++|..-...+||+.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 368899999999999999999988773379999998843 448999999999999999999999986
No 211
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=92.47 E-value=0.46 Score=38.16 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
.+.+|.|=.+|...|-.||...++++ ..|..+++++. |-.+.++|.+.++|..-...+||.++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 46899999999999999999988776 45889999873 23799999999999999999998874
No 212
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=92.46 E-value=0.34 Score=43.19 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=57.2
Q ss_pred CCccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~-~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|. .++-.+|..++..+- .|..++++++. +-.+.++|.+.+.|+.....+||..|..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G-~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3578899999999 999999999987653 39999999853 3369999999999999999999998864
No 213
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.37 E-value=0.84 Score=35.87 Aligned_cols=69 Identities=9% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccc--ccce-eEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSH--IDHV-EELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~--~~~i-~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|=.+|..+|-.||..+++.+ +..+ ..+++.. + .++-.+.++|.+.+.|......+||..|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT--G-RMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC--S-SSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC--C-ccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 346889999999999999999998776 2222 5556552 2 245689999999999999999999998853
No 214
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.33 E-value=0.35 Score=35.11 Aligned_cols=66 Identities=14% Similarity=0.270 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 67 ~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.|.|=.+|..+|-.|+..+++.+ ..|..++++++.. -.++-.+.++|.+.++|+.-....| ..++.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 47788999999999999998765 3488899988532 1346689999999999999999877 65553
No 215
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.31 E-value=0.66 Score=35.93 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCCccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 62 NSRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 62 ~~~~~~lciLaVP~-~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
...+..|.|=.+|. .++-.||..+++.+ ..|..+++.+ -.+.+.|.+.++|..-...+||..|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~~-------g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIKN-------AFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEECS-------SEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34578899999998 99999999998775 3477787743 37899999999999999999999875
No 216
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=92.28 E-value=0.46 Score=41.82 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=58.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|-.+|..+|-.||..+++.+ ..|..++|+++.+ .++-.+.++|.+.++|..=...+||..++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4679999999999999999998765 4688999999654 457789999999999999999999998764
No 217
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.15 E-value=0.48 Score=37.52 Aligned_cols=69 Identities=7% Similarity=0.135 Sum_probs=56.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..++-.||..++..+ ..|..++|+++.. -.++-.+.+.|.+.+.|..-... ||..|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQW-GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSS-CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 35789999999999999999998765 3588999998532 12455899999999999999888 8887753
No 218
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=92.14 E-value=0.46 Score=43.26 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=59.7
Q ss_pred CCccEEEEEecCCCC-CHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYL-SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~m-s~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|-.+|..+ +..||..+++.+ ..|..+++.++..-.++-.+.++|.+.++|..-...+||+.|+.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV-HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS-SCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC-CCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 356789999999997 899999999876 45888898885433456789999999999999999999999854
No 219
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=92.12 E-value=0.55 Score=42.55 Aligned_cols=71 Identities=10% Similarity=0.212 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~-~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+.|.|-.+|..+|-.||..++..+- ..|..++|+++..+ .++-...++|.+.+.|+.-...+||+.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC
Confidence 567799999999999999999998764 37999999995321 245679999999999999999999998864
No 220
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=92.12 E-value=0.26 Score=38.69 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=57.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccccc-ceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCc
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKR 131 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~-~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~ 131 (356)
+=..|.|=.+|..+|-.+|..+++++-. .|..+|++++..+ .+|-..-++|.+.++|.+-....||..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 3466999999999999999999998844 7889999995421 245689999999999999999999975
No 221
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.74 E-value=0.26 Score=42.27 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=55.9
Q ss_pred ccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~-~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+..|.|-.+|. .++-.+|..+++.+- .|.+++++++. +-.+.++|.+.+.|......+||..|..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G-~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC-CCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 57899999999 999999999987753 38999999843 3369999999999999999999998864
No 222
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=91.66 E-value=0.77 Score=37.76 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc--cc-----eeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI--DH-----VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~--~~-----i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|=.+|..+|-.||..+++.+- .. +..+++.++. .++-.+.+.|.+.+.|..-...+||..|..
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG--RMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET--TTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC--CcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3467899999999999999999998762 22 3557776644 357799999999999999999999999863
No 223
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.61 E-value=0.33 Score=36.82 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=52.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcC-CcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG-KRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng-~~Fns 134 (356)
....|.|-.+|..+|-.||..+++.+-.-|..+++.. +-.+.++|.+.+.|+.-...+|| ..|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE------TTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC------CCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 4577999999999999999999987754355444432 33789999999999999999999 77653
No 224
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.57 E-value=0.5 Score=37.64 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=54.5
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
++.|.|=.+|..+|-.||..+++.+ ..|..++|.+ ++-.+.+.|.+.+.|+.=...+||..|...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF-GSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 5789999999999999999988764 3577787775 234699999999999999999999998743
No 225
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=91.50 E-value=0.57 Score=42.78 Aligned_cols=69 Identities=7% Similarity=0.103 Sum_probs=57.8
Q ss_pred CccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCC--CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~-ms~~d~l~F~~~~~~~i~~iriir~~~--~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|.. +|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.+.|..-. ..||+.|..
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g 280 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN 280 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT
T ss_pred CCceEEEECCCcccCCHHHHHHHHhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC
Confidence 4578999999999 9999999998775 4688899998542 234678999999999999999 999998863
No 226
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=91.49 E-value=0.87 Score=40.43 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=57.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.+..|.|-.+|..++-.||..+++.+-..|..+++++.+ +-.+.++|.+.+.|..-...+||+.|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----CcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 368899999999999999999998874379999998743 347999999999999999999999986
No 227
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.47 E-value=0.94 Score=36.44 Aligned_cols=73 Identities=11% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 61 ~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
|......|.|=.+|..+|-.||..|+..+-. |..++++.+.. -.++-.+.++|.+.+.|+.-.. .||..|..-
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 3445688999999999999999999987632 33322333221 1246689999999999999988 899888654
No 228
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=91.44 E-value=1.3 Score=37.42 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=55.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..+|-.||..++..+ ..|..++++++... .++-.+.++|.+.++|..-... ||..|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC
Confidence 34789999999999999999998764 45999999986321 2466799999999999988776 7776653
No 229
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=91.33 E-value=0.7 Score=36.71 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=54.0
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC--CCcceE-EEEEeCChhhHHHHHhhhcCCcCCCCC
Q 018432 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPAE 136 (356)
Q Consensus 68 lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~--~~~~ym-vLikF~s~~~A~eF~~~~ng~~Fnsle 136 (356)
|.|=-+|..||-++|+.-+++.. .+.-.+.+..+. -|+.|+ +.|.|.+++++.+|...|+|..|-.-.
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred EEEeCCCCCCCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 45667899999999999999864 466677776431 245664 899999999999999999999996443
No 230
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.97 Score=34.59 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=53.7
Q ss_pred CccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~-~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|. .+|-.||..++..+ ..|..+++.+ -.+.++|.+.++|..-...+||..|..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIKN-------AFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEET-------TEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 467899999998 99999999998775 3477787753 278999999999999999999998864
No 231
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=91.03 E-value=0.49 Score=39.04 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=53.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhh---hcCCcC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSN---LNGKRF 132 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~---~ng~~F 132 (356)
.+..|.|-.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.++|+..... ++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY-GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT-CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc
Confidence 36789999999999999999998775 3599999998531 12455799999999999998886 555544
No 232
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=90.69 E-value=1 Score=39.48 Aligned_cols=72 Identities=6% Similarity=0.013 Sum_probs=57.6
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....+.|.|=.+|..+|-.+|..+++.+ ..|.+++|+++..+ .++-...++|.+.++|..-....||+.+..
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPA-GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhh-CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 3345789999999999999999998765 35999999985321 235579999999999999999999988753
No 233
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=90.51 E-value=1 Score=40.84 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=58.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..+|-.|+..+++.+- .|..++++++.. -.++-.+.++|.+.+.|..-...+||..|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFG-SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcC-CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 457899999999999999999987753 489999998532 1246679999999999999999999998863
No 234
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.49 E-value=1.5 Score=34.74 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=52.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCc
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~ 131 (356)
.+..|.|=.+|..++-.||..+++.+ ..|..+++++. +-.+.++|.+.+.|..-...+|+..
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF-GTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCC
Confidence 46889999999999999999998775 35788888873 3379999999999999988887764
No 235
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=90.15 E-value=0.68 Score=36.65 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=52.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....|.|=.+|..+|-.||..+++.+ ..|..++|+++.. -.++-.+.++|.+.+.|+.-.... |..|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~ 92 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD 92 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence 356789999999999999999998765 4588999998532 134568999999999999998764 34443
No 236
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=89.93 E-value=0.71 Score=38.52 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=54.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..+|-.||..+++.+ -.+++++..+ .++-.+.++|.+.++|..-...+||+.|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEECSSS-SCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEecCCC-CCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999999999999999999873 4556664333 456689999999999999999999998863
No 237
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=89.90 E-value=0.9 Score=37.39 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=55.2
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|-.+|..+|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.++|..-.. .||..|+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQW-GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTT-SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhC-ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 4679999999999999999998765 3588999988531 1346689999999999998876 68877764
No 238
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=89.80 E-value=1 Score=37.23 Aligned_cols=65 Identities=9% Similarity=0.190 Sum_probs=53.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccc---cc-------ceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSH---ID-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~---~~-------~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.+..|.|-.+|..+|-.||..++..+ .. .|..+++.+. +-.+.++|.+.++|+... .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46789999999999999999998776 12 6777777663 347899999999999999 89998875
Q ss_pred C
Q 018432 134 P 134 (356)
Q Consensus 134 s 134 (356)
.
T Consensus 77 g 77 (172)
T 2g4b_A 77 G 77 (172)
T ss_dssp T
T ss_pred C
Confidence 3
No 239
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=89.69 E-value=0.48 Score=34.23 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=50.5
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 68 lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
|.|=.+|..+|-.|+..+++.+ ..|..++++++.. -.++-.+.++|.+.++|+.-... |+..++.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 67 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGF-GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHH-SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 5677899999999999988765 3488888887532 13466899999999999999886 6666543
No 240
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=89.67 E-value=0.53 Score=42.98 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=56.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|-.+|..++-.+|..+++.+-..|..++++++....++-.+.++|.+.+.|..-...+||..+..
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999876447999999885432346689999999999999999999998864
No 241
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=89.45 E-value=1.1 Score=40.72 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=56.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.+|..+|-.||..++..+ ..|..+++.++ +-.+.++|.+.+.|+.....+||..+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERY-GEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGG-CCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-CCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 346789999999999999999998765 34888988874 3379999999999999999999998753
No 242
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.40 E-value=1.3 Score=38.64 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=55.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+...|.|-.+|..+|-.+|.+.++.+ ..|..++|.+. .++....++|.+.++|++=....||+.|..
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 344557788899999999999988665 55888988763 257889999999999999999999999853
No 243
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=89.35 E-value=2 Score=38.86 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=56.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
.+..|.|-.+|..+|-.||..+++.+ ..|..++++++..-.++-.+.++|.+.++|..-...+|+..|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQF-GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhc-CCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 46789999999999999999998764 368999999864333567899999999999999999965544
No 244
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.04 E-value=2.4 Score=32.13 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=51.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..+|-.||..+++.+- .|.++ +.+.. ..+ .+.++|.+.+.|+.-.. +||..|+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v--~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-PVASV--VMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS-CEEEE--EECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEE--EEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 356799999999999999999988753 35555 33222 334 89999999999999999 99998864
No 245
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.75 E-value=1.4 Score=34.79 Aligned_cols=61 Identities=10% Similarity=0.245 Sum_probs=50.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 130 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~ 130 (356)
.+..|.|=.+|..+|-.||..++..+ ..|..++++++ +-.+.++|.+.+.|..-...+|+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~ 74 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAV 74 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 46789999999999999999988775 35788888873 447999999999999988877643
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=88.59 E-value=0.41 Score=36.92 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=50.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec--CCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN--DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~--~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..+|-.||..++..+-. |.. +++++ .+ .++-.+.++|.+.+.|+.... +||..|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-v~~-~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFA-KND-LAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHH-HHT-CCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCC-cce-EEEecCCCC-CcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 4678999999999999999999877632 222 33332 12 234579999999999999998 99998874
No 247
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.55 E-value=3.5 Score=34.05 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=52.4
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 66 ~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..|.|-.+|..+|-.+|.+.++.+ ..|..++|++. +.+.+.++|.+.+.|..=....||..|..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 335578899999999999988765 45888888763 25679999999999999999999998854
No 248
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=88.47 E-value=1.3 Score=40.04 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=55.8
Q ss_pred CccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l----~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|-.+|..+|-.||. .++.. ...|..+++.++. .++-.+.++|.+.++|..-...+||..|..
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSRSL--KMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcCCC--CcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 46889999999999999965 44433 3468889999843 367789999999999999999999988764
No 249
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=88.40 E-value=1.7 Score=38.17 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=53.0
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng 129 (356)
...|.|-.+|...|..+|..+++.+- .|..++|+++..-..+-.+.+.|.+.++|.......|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 57899999999999999999998753 48999999854333466899999999999999876553
No 250
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=88.35 E-value=0.98 Score=36.49 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=56.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
....|.|=.+|..++-.||..++..+-..|..++|.... ++-...+.|.+.+.|+.=...+||..|+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~---~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD---FDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS---SSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC---CCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467899999999999999999987764368888886422 34478999999999999999999998864
No 251
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.33 E-value=0.94 Score=37.29 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=56.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc---cceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI---DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~---~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.....|.|=.+|...|-.||..|+..+- ..|..++|+++..-..+-...++|.+.+.|+.=... |++.+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 4567899999999999999999998873 247889998853212355799999999999998876 8877653
No 252
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.31 E-value=0.72 Score=36.63 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=52.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC----CcceEEEEEeCChhhHHHHHhhh---cCCcC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNL---NGKRF 132 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~----~~~ymvLikF~s~~~A~eF~~~~---ng~~F 132 (356)
.+..|.|=.+|..+|-.||..+++.+- .|. ++++++... .++-.+.+.|.+.++|+.-.... ||+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFG-PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTC-CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 457799999999999999999998763 344 677764422 34668999999999998877766 77765
No 253
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=88.28 E-value=1.2 Score=40.38 Aligned_cols=65 Identities=9% Similarity=0.196 Sum_probs=56.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.+..|.|-.+|..+|-.||..+++.+ ..|..++++++. +-.+.++|.+.++|..-...+||..|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 46789999999999999999998765 568889999743 348999999999999999999999886
No 254
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=87.63 E-value=3 Score=34.31 Aligned_cols=69 Identities=13% Similarity=0.276 Sum_probs=53.3
Q ss_pred CccEEEEEecCCCCCHHHHHH----HhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVR----FCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~----F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.+..|.|=.+|..++..||.. +++.+ ..|..+++.++. .++-.+.+.|.+.++|+.-....||..|..-
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDLSD--DNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECCCC--SSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEeccCC--CcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 367899999999999988653 33322 347788887643 3466799999999999999999999988643
No 255
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.95 E-value=1.7 Score=34.66 Aligned_cols=62 Identities=3% Similarity=0.074 Sum_probs=52.5
Q ss_pred CccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCc
Q 018432 64 RSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (356)
Q Consensus 64 ~~~~lciLaVP~-~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~ 131 (356)
.+..|.|=.+|. .+|-.||..++.++ ..|..++|+++. -.+.++|.+.+.|..-...+|+..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~k-----g~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNKI-----NEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSSS-----SCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcCC-----CEEEEEECCHHHHHHHHHHHcCCC
Confidence 478899999999 99999999988776 348999999842 258999999999999988888764
No 256
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=86.67 E-value=1.4 Score=43.83 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=57.1
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
...|.|-.+|..+|-.+|..+++.+ ..|..++|+.+..+ ..+-.+.|.|.+.+.|..-...+||..|..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 4689999999999999999988764 35888999875311 235589999999999999999999998864
No 257
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=86.64 E-value=0.13 Score=41.02 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=55.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeE--------EEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--------LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~--------iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+..|.|=.+|..++-.||..++..+- .|.. ++++++.. -.++-.+.++|.+.++|+.-...+||..|..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 457789999999999999999987653 3455 77777421 1245579999999999999999999998864
No 258
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.58 E-value=1.1 Score=33.62 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=45.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHH
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADE 122 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~e 122 (356)
.+..|.|=.+|..+|-.||..+++.+ ..|..++|+++ ++-.+.++|.+.++|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~----~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY-GDVMDVFIPKP----FRAFAFVTFADDQIAQS 57 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT-SCCCEEECCSS----CCSCCEEECSCHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEEecC----CCCEEEEEECCHHHHHH
Confidence 46789999999999999999998775 34888999874 35579999999999974
No 259
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=86.39 E-value=0.66 Score=39.09 Aligned_cols=70 Identities=6% Similarity=0.046 Sum_probs=55.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.....|.|=.+|..+|-.||..|+..+- |..++|+++..-.++-...++|.+.+.|+.-. ..|+..|..-
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC--CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 3457799999999999999999998875 55899988542223557899999999999988 6788877653
No 260
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=86.24 E-value=1.3 Score=36.10 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=53.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeE--EEEeecCC-CCcceEEEEEeCChhhHHHHHhhhcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGK 130 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~--iriir~~~-~~~~ymvLikF~s~~~A~eF~~~~ng~ 130 (356)
.....|.|-.+|..+|-.||..++..+ ..|.. ++|+++.. -.++-...++|.+. .|..-...+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~-G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPY-AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGG-CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 346789999999999999999998765 34544 89988541 12456899999999 999999999998
No 261
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.89 E-value=0.6 Score=37.69 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=54.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC--CCCcceE-EEEEeCChhhHHHHHhhhcCCcCCCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPAE 136 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~--~~~~~ym-vLikF~s~~~A~eF~~~~ng~~Fnsle 136 (356)
+.-|.|=-+|..||-++|+.-+++..+ +.-.+.+..+ .-+++|+ +.|.|.++++..+|...|+|..|-.-.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~-~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA-HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS-EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc-cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 445778889999999999999998643 4455555422 1244554 899999999999999999999996543
No 262
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=85.19 E-value=2 Score=36.31 Aligned_cols=64 Identities=9% Similarity=0.230 Sum_probs=52.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccc---c-------ceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHI---D-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~---~-------~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+..|.|-.+|..+|-.||..++..+- . .|..+++.+. +-.+.++|.+.++|+... .+||..|..
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-----~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-----TTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-----CCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 56799999999999999999997761 2 5677766553 337999999999999999 899988753
No 263
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=85.06 E-value=3.8 Score=36.13 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=59.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccc-eeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCCCcC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDH-VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAE 138 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~-i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsle~e 138 (356)
+..|.|-.+|..+|-.||..+++++-.- +..++++++.+ ..+-...++|.+.+.|..=...+||..++.-...
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~-~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS-ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS-SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC-CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 5689999999999999999998776432 38899988543 2346999999999999999999999998765433
No 264
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=84.43 E-value=2.9 Score=34.73 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=55.6
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhccc----ccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSH----IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 62 ~~~~~~lciLaVP~~ms~~d~l~F~~~~----~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
.....+|+++.||--++.+-+..|+.++ ...|..|.++.+- --++++|.|...|..---..||..|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeec
Confidence 3457899999999999999999999876 2457777665532 27999999999999999999999887
No 265
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.25 E-value=7.1 Score=29.55 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=50.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
....|.|-. ..+|-.||..++..+- .|..++|.+ ++-.+.+.|.+.+.|+.-...+||..|.
T Consensus 14 ~~~~l~V~n--~~~t~~~l~~~F~~~G-~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 14 KGNTLYVYG--EDMTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCSEEEEEC--SSCCHHHHHHHHTTTS-CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCEEEEcC--CCCCHHHHHHHHhhCC-CEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 456788877 3899999999887653 478888864 2337999999999999999999999885
No 266
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.86 E-value=2.8 Score=34.46 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=51.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 130 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~ 130 (356)
.+..|.|=.+|..+|-.||..+++++ ..|..++|+++ +-.+.++|.+.++|..-...+|+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 46789999999999999999998775 35888899884 347999999999999988877753
No 267
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=83.70 E-value=2.9 Score=31.74 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=48.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
....|.|=.+|..+|-.||..+++.+ ..|..++|+++ +|-...+.|.+.++|++ .||+.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~ 69 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDL 69 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCc
Confidence 46789999999999999999998765 45889999883 45689999999999983 566643
No 268
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=83.17 E-value=7.1 Score=30.84 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=51.0
Q ss_pred ccEEEEEecCCC-----CCHHHHHHHhcccccceeEEEEeecCCC--CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNY-----LSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~-----ms~~d~l~F~~~~~~~i~~iriir~~~~--~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+|.|..+..- -+-.|+...++. ...|.+++|.++... ..+--+-++|.+.++|..=....||+.|+.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 566777766531 145677776653 346999999985321 347789999999999999999999999974
No 269
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.77 E-value=4.2 Score=32.70 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=51.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 130 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~ 130 (356)
.+..|.|=.+|..+|-.||..+++++ ..|..++|+++ +-...++|.+.++|..-...+|+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~ 75 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSV 75 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 36889999999999999999988765 35999999984 337999999999999888877653
No 270
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.43 E-value=2.2 Score=34.59 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=24.4
Q ss_pred CCCCCCCccccccCCC-----CcceeeecCCCccchhhhhcc
Q 018432 165 TELPTCPICLERLDPD-----TSGILSTICDHSFQCSCTAKW 201 (356)
Q Consensus 165 ~elptCpICLe~ld~~-----~sgilt~~C~H~FH~~Cl~kW 201 (356)
+..+.|-+|+..=+.. ..-+.=..|+..||..|+..+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~ 44 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFS 44 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCC
Confidence 5678999999753211 112333568999999999643
No 271
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.23 E-value=5.1 Score=32.50 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=51.2
Q ss_pred CccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCc
Q 018432 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (356)
Q Consensus 64 ~~~~lciLaVP~~-ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~ 131 (356)
.+..|.|=.+|.. +|-.||..++..+ ..|..++|++. +-.+.++|.+.++|..-...+|+..
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~f-G~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPY-GKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKA 86 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTT-SCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhc-CCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCC
Confidence 3688999999998 9999999988765 35888999873 3379999999999999988877543
No 272
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=80.22 E-value=7.4 Score=31.32 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..+..|.|-.. .+|-.||..+++.+- .|..+++.+ ++-.+.++|.+.+.|..-...+||..|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G-~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC-CCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC-CEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35677888873 699999999987653 377778764 23379999999999999999999998864
No 273
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=79.48 E-value=3.8 Score=32.41 Aligned_cols=69 Identities=12% Similarity=0.271 Sum_probs=48.4
Q ss_pred ccEEEEEec--CCCCCH--------HHHHHHhcccccceeEEEEeecCCC---CcceEEEEEeCChhhHHHHHhhhcCCc
Q 018432 65 STCIFVVAV--PNYLSS--------DEFVRFCGSHIDHVEELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKR 131 (356)
Q Consensus 65 ~~~lciLaV--P~~ms~--------~d~l~F~~~~~~~i~~iriir~~~~---~~~ymvLikF~s~~~A~eF~~~~ng~~ 131 (356)
+++|+|..+ |..+.- .|+...++. ...|.+++|.++... +.+--+-++|.+.++|..=....||+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 567777766 333321 244444332 346999999985421 245689999999999999999999999
Q ss_pred CCC
Q 018432 132 FSP 134 (356)
Q Consensus 132 Fns 134 (356)
|+.
T Consensus 84 f~G 86 (105)
T 3v4m_A 84 FAN 86 (105)
T ss_dssp ETT
T ss_pred eCC
Confidence 974
No 274
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.76 E-value=3.9 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=25.1
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhccc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~ 202 (356)
.....|.+|.+.-+.. .-+.=..|...||..|+....
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCcc
Confidence 3567899998764321 113335788999999997654
No 275
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=78.54 E-value=3.9 Score=32.21 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=36.9
Q ss_pred cceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 91 DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 91 ~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
..|..++|.++.....+--+.++|.+.++|..=....||+.|+.
T Consensus 52 G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 52 GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 45999999986433346789999999999999999999999875
No 276
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=78.17 E-value=10 Score=31.57 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=54.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+-..|.|-.+|..+|-.+|.+.++.+ ..|..+++++.. ..+-+.++|.+.+.|..=....||+.|..
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 34456688899999999999887664 448888888742 46779999999999999999999999864
No 277
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=77.25 E-value=6.5 Score=34.56 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=55.8
Q ss_pred CccEEEEEecC-CCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 64 RSTCIFVVAVP-NYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 64 ~~~~lciLaVP-~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
.+.+|.|=.+| ..++..+|..+++.+ ..|..++|+++. +-.+.++|.+.++|+.=...+||..|..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~-G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY-GNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT-SCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999 899999999988654 468999999842 3469999999999999999999998864
No 278
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=77.23 E-value=3 Score=33.90 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCCCccccccCC------CCcceeeecCCCccchhhhhcc
Q 018432 168 PTCPICLERLDP------DTSGILSTICDHSFQCSCTAKW 201 (356)
Q Consensus 168 ptCpICLe~ld~------~~sgilt~~C~H~FH~~Cl~kW 201 (356)
+.|.+|+..-.. ...-+.=..|..+||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 679999875421 1122333578899999999765
No 279
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.04 E-value=3.2 Score=33.93 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=53.6
Q ss_pred ccEEEE--EecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC-CCCC
Q 018432 65 STCIFV--VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF-SPAE 136 (356)
Q Consensus 65 ~~~lci--LaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F-nsle 136 (356)
+..|.| -++|..++-.||...++.+- .|..++|++ +|--..++|.+.++|++=....||+.+ +.+.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 456888 66999999999999887765 577777764 244789999999999999999999987 6554
No 280
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=75.87 E-value=1.3 Score=36.78 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee-EEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCC
Q 018432 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-ELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (356)
Q Consensus 63 ~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~-~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fn 133 (356)
..+..|.|=.+|..+|-.||..++..+-.... .++-.++. .++-.+.++|.+.++|+.-. ++||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG--TNRKFGYVDFESAEDLEKAL-ELTGLKVF 79 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE--TTTTEEEEEESSHHHHHHHH-HGGGEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC--ccccEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 45788999999999999999988776522111 11112221 24558999999999999999 59998886
No 281
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=75.11 E-value=5.9 Score=30.68 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCCCCCcccccc-CCCCcceeeecCCCccchhhhhc-cc
Q 018432 166 ELPTCPICLERL-DPDTSGILSTICDHSFQCSCTAK-WT 202 (356)
Q Consensus 166 elptCpICLe~l-d~~~sgilt~~C~H~FH~~Cl~k-W~ 202 (356)
|..+|++|++.+ .+.+ ..-+.|+|+|...|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av--~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAV--KTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCC--EEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCce--EECCcCChHHhHHHCHHHhc
Confidence 567899999863 3321 22379999999999997 65
No 282
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=71.37 E-value=12 Score=30.07 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=46.7
Q ss_pred ccEEEEEecCCCCC------HHHHHHHhcc---cccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLS------SDEFVRFCGS---HIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms------~~d~l~F~~~---~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+|+|..+=.-.. ..|+..=+.. ....|.+++|.++. .+--+-++|.+.++|..-....||+.|+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56677766644333 2333322221 23568999998853 25579999999999999999999999975
No 283
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.48 E-value=23 Score=29.19 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=50.5
Q ss_pred CccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCC-hhhHHHHHhhhc
Q 018432 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVD-QLTADEFYSNLN 128 (356)
Q Consensus 64 ~~~~lciLaVP~~-ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s-~~~A~eF~~~~n 128 (356)
.+.+|.|-++|.. .|-.||..++..+ ..|..+.+++++ + ...++|.+ ...|.++....|
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~--~---tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGA--K---EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTC--S---EEEEEESSCHHHHHHHHHHTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCC--C---EEEEEECCChHHHHHHHHHhh
Confidence 4689999999999 9999999998874 469999998854 2 59999999 789999998875
No 284
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=69.28 E-value=13 Score=31.55 Aligned_cols=68 Identities=10% Similarity=-0.044 Sum_probs=50.7
Q ss_pred cEEEEEec----CCCCCHHHHHHHhcccccceeEEEEeecCCC-CcceEEEEEeCC----hhh----HHHHHh--hhcCC
Q 018432 66 TCIFVVAV----PNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVD----QLT----ADEFYS--NLNGK 130 (356)
Q Consensus 66 ~~lciLaV----P~~ms~~d~l~F~~~~~~~i~~iriir~~~~-~~~ymvLikF~s----~~~----A~eF~~--~~ng~ 130 (356)
+-|.|=.+ |..++-.++..+++++- .|.+++++.+..+ -.+....++|.| +.. |..... ..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 34778888 99999999999998644 7999999996533 247899999996 323 677766 56787
Q ss_pred cCCC
Q 018432 131 RFSP 134 (356)
Q Consensus 131 ~Fns 134 (356)
.++.
T Consensus 82 ~I~G 85 (136)
T 2j8a_A 82 FIMG 85 (136)
T ss_dssp EETT
T ss_pred eecC
Confidence 7753
No 285
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=65.79 E-value=10 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=23.7
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~ 202 (356)
......|.||.+. + .-+.=-.|+..||..|+...+
T Consensus 9 ~~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l 43 (66)
T 2lri_C 9 LAPGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAG 43 (66)
T ss_dssp CCTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTT
T ss_pred CCCCCCcCCCCCC---C-eEEECCCCCCceecccCCCcc
Confidence 3455679999753 1 224445688999999996554
No 286
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=65.33 E-value=13 Score=34.05 Aligned_cols=64 Identities=8% Similarity=0.188 Sum_probs=53.1
Q ss_pred CCccEEEEEecCCCC---------CHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 63 SRSTCIFVVAVPNYL---------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 63 ~~~~~lciLaVP~~m---------s~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
..++.|.|=.+|..+ +-.+|...++.+ ..|..++|++. +-.+-++|.+.++|..=....||+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 357889999999887 567777776654 45999999973 44799999999999999999999998
No 287
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=64.79 E-value=23 Score=34.22 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=60.3
Q ss_pred ccEEEE--EecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCCCcC--ce
Q 018432 65 STCIFV--VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAE--VC 140 (356)
Q Consensus 65 ~~~lci--LaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsle~e--~C 140 (356)
+..|.| ++++..+|-.||.+.++.+ ..|..+++.+ +|--.-++|.+.+.|++-....||+.+-..... +=
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~-G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTT-SCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhc-CCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 456777 5678899999999998876 3467777655 344788999999999999999999988322222 12
Q ss_pred EEEEEEEEEEeee
Q 018432 141 HMLFMLSVEYTEL 153 (356)
Q Consensus 141 ~vvfv~~v~~~~~ 153 (356)
++.|+.++.....
T Consensus 92 y~~~~~~~~~~~~ 104 (345)
T 3tht_A 92 YLNFVEKVQWKEL 104 (345)
T ss_dssp EEEECSSEEEEEE
T ss_pred EEEEeeccccccc
Confidence 5567766665543
No 288
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.00 E-value=45 Score=25.80 Aligned_cols=67 Identities=12% Similarity=0.243 Sum_probs=47.6
Q ss_pred CccEEEEEecCCCCC-----------HHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcC
Q 018432 64 RSTCIFVVAVPNYLS-----------SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (356)
Q Consensus 64 ~~~~lciLaVP~~ms-----------~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~F 132 (356)
.+.+|.|..+..... -.||..+++.+ ..|..+.| .+. . .+-.+.++|.+.+.|..=...+||+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i-~~~-~-~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLL-FDR-H-PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEE-ETT-C-TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEE-ecC-C-CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 467788887743332 24666666544 35777755 422 2 466799999999999999999999998
Q ss_pred CC
Q 018432 133 SP 134 (356)
Q Consensus 133 ns 134 (356)
+.
T Consensus 90 ~g 91 (112)
T 2dit_A 90 GG 91 (112)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 289
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.15 E-value=6.7 Score=29.23 Aligned_cols=26 Identities=27% Similarity=0.722 Sum_probs=20.7
Q ss_pred CCCcccccCCCCce--eeeccccceeccC
Q 018432 217 ERPTCSVCGTVENL--WVCLICGFVGCGR 243 (356)
Q Consensus 217 ~~~~C~~C~~~~nl--WiCL~CG~vGCgr 243 (356)
...+|..|.....| +.| .||...|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 35689999887554 789 899999984
No 290
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=58.85 E-value=6.8 Score=42.33 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCceeeeccccceeccCCCCcHHhhhhhhcCCeeeEeCC
Q 018432 227 VENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLR 265 (356)
Q Consensus 227 ~~nlWiCL~CG~vGCgr~~~~HA~~H~~~t~H~~al~l~ 265 (356)
...|.|||.|-.-+|- .|+..|++.|+|++.+++.
T Consensus 59 ~~gl~vcl~~f~~~~~----~~~~~~~~~~~~~~~l~i~ 93 (854)
T 3ihp_A 59 EGGLYICMNTFLGFGK----QYVERHFNKTGQRVYLHLR 93 (854)
T ss_dssp TTCEEEETTTCCEECT----TTHHHHHHHHCCCEEEEEE
T ss_pred CCCeEEcccccccccH----HHHHHHHhccCCceEEEEE
Confidence 3579999999777773 7999999999999988654
No 291
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=57.89 E-value=11 Score=30.64 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=47.7
Q ss_pred ccEEEEEecCCC--C---CHHHHHHHhcccccceeEEEEeecCCC-----CcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNY--L---SSDEFVRFCGSHIDHVEELIFIRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~--m---s~~d~l~F~~~~~~~i~~iriir~~~~-----~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+|+|..+-.- + --.|+...++. ...|.+++|+++... ..+--+-++|.+.++|..-....||+.|+.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567777776321 1 12344444432 356999999985321 123579999999999999999999999975
No 292
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.09 E-value=8.4 Score=28.73 Aligned_cols=26 Identities=35% Similarity=0.881 Sum_probs=20.3
Q ss_pred CCCcccccCCCCce--eeeccccceeccC
Q 018432 217 ERPTCSVCGTVENL--WVCLICGFVGCGR 243 (356)
Q Consensus 217 ~~~~C~~C~~~~nl--WiCL~CG~vGCgr 243 (356)
...+|..|.....| +.| .||...|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 35688889887554 789 799999984
No 293
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.57 E-value=5.4 Score=29.99 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=21.6
Q ss_pred CCCcccccCCCCce-----eeeccccceeccC
Q 018432 217 ERPTCSVCGTVENL-----WVCLICGFVGCGR 243 (356)
Q Consensus 217 ~~~~C~~C~~~~nl-----WiCL~CG~vGCgr 243 (356)
...+|..|+....| +.| .||.+-|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 45689999988776 689 999999984
No 294
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=54.26 E-value=45 Score=26.09 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=51.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.-|.|=.++..+|-.+|...+..+ ..|.+++++.. |-..+++|.+.+.|+.=.+..||..+..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~~-----kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYLN-----QGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcCC-----CcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 4567789999999999999876432 23778888762 4589999999999999999999988754
No 295
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=54.02 E-value=5 Score=32.30 Aligned_cols=32 Identities=28% Similarity=0.655 Sum_probs=21.2
Q ss_pred CCCCCccccccCCCCcceeee-cCCCccchhhh
Q 018432 167 LPTCPICLERLDPDTSGILST-ICDHSFQCSCT 198 (356)
Q Consensus 167 lptCpICLe~ld~~~sgilt~-~C~H~FH~~Cl 198 (356)
+-.|++|...++++..-|.-- .|+.-||..|+
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV 35 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECT 35 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccC
Confidence 346999999987653222222 56677888887
No 296
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.44 E-value=18 Score=25.83 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.+...|++|....+++..=|.=-.|..-||..|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 45667999998876542112223566778888874
No 297
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.41 E-value=11 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.733 Sum_probs=20.4
Q ss_pred CCCcccccCCCCce--eeeccccceeccC
Q 018432 217 ERPTCSVCGTVENL--WVCLICGFVGCGR 243 (356)
Q Consensus 217 ~~~~C~~C~~~~nl--WiCL~CG~vGCgr 243 (356)
...+|..|.....+ +.| .||...|+.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred cCccchhhcCcccccceEe-ccCCEeccc
Confidence 35678888877554 899 799999984
No 298
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=48.96 E-value=12 Score=23.42 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhc
Q 018432 333 RLLATQLETQRQVSTSF 349 (356)
Q Consensus 333 ~ll~sqLe~Qr~yyE~~ 349 (356)
.||...+|+||+-||+.
T Consensus 9 ~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 38899999999999864
No 299
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=48.10 E-value=19 Score=31.10 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=28.0
Q ss_pred CCCCCccccccCCCCcceeeecCCCccchhhhhccc------ccccccccccc
Q 018432 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRFCH 213 (356)
Q Consensus 167 lptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~------~ssCPvCR~~~ 213 (356)
...|.+|... + .-+.--.|...||..|+..-. +..||.|+...
T Consensus 4 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4569999843 1 223445688999999985432 24678777644
No 300
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=46.11 E-value=34 Score=26.90 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhccc
Q 018432 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (356)
Q Consensus 161 ~~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~ 202 (356)
.......+.|+||----.++ -+.--.|+..||..|+.+-.
T Consensus 9 ~e~~~~D~~C~VC~~~t~~~--l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAES--LFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSSC--CSSCSSSSSCCCHHHHHHHT
T ss_pred ccCCCCCcccCccccccccc--eeccccccccccHhhccccc
Confidence 33445788999997433221 12234689999999998763
No 301
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.14 E-value=15 Score=28.77 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=23.9
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
...+...|.||...-+++ .-++--.|+..||..|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSS
T ss_pred hccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCC
Confidence 345567899999875432 223334678889988874
No 302
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=43.70 E-value=50 Score=28.61 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=37.3
Q ss_pred ccceeEEEEeecCCC-----CcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 90 IDHVEELIFIRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 90 ~~~i~~iriir~~~~-----~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
...|.+++|+++... ..+--+.++|.+.++|..=....||+.|+.-
T Consensus 153 ~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 346999999975432 3355799999999999999999999999754
No 303
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.64 E-value=17 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=20.3
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.|.||...-+.+ .-+.=-.|+..||..|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCC
Confidence 588888764432 223445778999999985
No 304
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=43.34 E-value=71 Score=26.27 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=49.0
Q ss_pred CCCceeeeeeEEEEccCCCCCcC--C-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec---CCCCcceE
Q 018432 36 PNPKFSERRGLVHLFRGTSQSYQ--Q-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN---DAMEDRYS 109 (356)
Q Consensus 36 gnp~v~~~~G~vhl~r~~~~~~~--~-~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir~---~~~~~~ym 109 (356)
.+...|-+.|.|||.++...... - ...+.-.+++=..|...|.+... -++ + ..++.... ++.+..-.
T Consensus 24 ~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~---~~s--~--~~~~~~~~d~~d~~~~~~~ 96 (130)
T 1xke_A 24 VSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPL---SGS--D--RAWMWLASDFSDGDAKLEQ 96 (130)
T ss_dssp TTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEEC---TTC--S--SCEEEEEEECSSSCSEEEE
T ss_pred CCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeec---CCC--C--eEEEEEecccCCCCCceEE
Confidence 35688999999999987643211 0 00112345555556666654311 011 1 11222211 22223446
Q ss_pred EEEEeCChhhHHHHHhhhcC
Q 018432 110 VLIKLVDQLTADEFYSNLNG 129 (356)
Q Consensus 110 vLikF~s~~~A~eF~~~~ng 129 (356)
.+|+|.+.+.|++|+..+.-
T Consensus 97 ~~irfks~e~a~~f~~~~ee 116 (130)
T 1xke_A 97 LAAKFKTPELAEEFKQKFEE 116 (130)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 89999999999999997764
No 305
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.78 E-value=89 Score=24.53 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=43.6
Q ss_pred ccEEEEEecC-----CCCC---HHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVP-----NYLS---SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP-----~~ms---~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+|.|-.+| +++. +.+|++-++.+- .|..+||+++. ..+.|++.++|..=-+ .||..++.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3445555566 3444 356776665543 69999999942 6999999999988887 99987764
No 306
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=42.51 E-value=13 Score=32.97 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=21.7
Q ss_pred CCCccccccCCCCcceee---ecCCCccchhhhh
Q 018432 169 TCPICLERLDPDTSGILS---TICDHSFQCSCTA 199 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt---~~C~H~FH~~Cl~ 199 (356)
.||||...++++..+... -.|+.-||..|+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccc
Confidence 599999998876321122 3567889988873
No 307
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=42.24 E-value=1e+02 Score=25.31 Aligned_cols=100 Identities=8% Similarity=-0.020 Sum_probs=53.9
Q ss_pred eeeeccccccc-cc-CCCCceeeeeeEEEEccCCCCCcC--C-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEE
Q 018432 22 FCTVSSTATRS-RA-NPNPKFSERRGLVHLFRGTSQSYQ--Q-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96 (356)
Q Consensus 22 ~~~~~s~~~~~-~~-~gnp~v~~~~G~vhl~r~~~~~~~--~-~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~i 96 (356)
.-.|...+-+= |. ..+...+-+.|.|||.++...... - ...+...+++=..|...|.+.. ....-..+
T Consensus 22 ~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~-------~~~s~~~~ 94 (134)
T 1rrp_B 22 EEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTP-------NAGSDRSF 94 (134)
T ss_dssp EEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBC-------STTCTTEE
T ss_pred EEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEee-------cCCCCeEE
Confidence 44444444443 32 345688999999999987533211 0 1111234444444555554431 10111223
Q ss_pred EEeec---CCCCcceEEEEEeCChhhHHHHHhhhc
Q 018432 97 IFIRN---DAMEDRYSVLIKLVDQLTADEFYSNLN 128 (356)
Q Consensus 97 riir~---~~~~~~ymvLikF~s~~~A~eF~~~~n 128 (356)
+..-. ++.+..-..+|+|.+.+.|++|...|+
T Consensus 95 ~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~ 129 (134)
T 1rrp_B 95 VWHALDYADELPKPEQLAIRFKTPEEAALFKCKFE 129 (134)
T ss_dssp EEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEEcccccCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 33222 122334578999999999999998875
No 308
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=41.04 E-value=16 Score=28.41 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=18.1
Q ss_pred cceEEEEEeCChhhHHHHHh
Q 018432 106 DRYSVLIKLVDQLTADEFYS 125 (356)
Q Consensus 106 ~~ymvLikF~s~~~A~eF~~ 125 (356)
..-+|+|+|+|.+.|.+||.
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 46699999999999999986
No 309
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=40.48 E-value=15 Score=27.01 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=22.6
Q ss_pred CCCCCCCccccccCCCCcceeee-cCCCccchhhh
Q 018432 165 TELPTCPICLERLDPDTSGILST-ICDHSFQCSCT 198 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~-~C~H~FH~~Cl 198 (356)
.++-.|++|...++++..-|.-- .|+--||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34668999999987754333333 67777898887
No 310
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.75 E-value=22 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=19.1
Q ss_pred CCcccccCCCCc---eeeeccccceeccC
Q 018432 218 RPTCSVCGTVEN---LWVCLICGFVGCGR 243 (356)
Q Consensus 218 ~~~C~~C~~~~n---lWiCL~CG~vGCgr 243 (356)
..+|..|+.... .+.| .||.+.|++
T Consensus 25 ~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred CccchhhCCeecccCCeEc-CCCCEeccc
Confidence 467888887654 4789 499999984
No 311
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=37.97 E-value=76 Score=25.54 Aligned_cols=62 Identities=16% Similarity=0.406 Sum_probs=36.7
Q ss_pred CCCCCCCccccccCCCCcceee-e--cCCCccchhhhhccc----cccccccccccccCCCCcccccCCCCceeeecccc
Q 018432 165 TELPTCPICLERLDPDTSGILS-T--ICDHSFQCSCTAKWT----VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICG 237 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt-~--~C~H~FH~~Cl~kW~----~ssCPvCR~~~~~~~~~~C~~C~~~~nlWiCL~CG 237 (356)
.+...|.+|.+. + . ++. - .|...||..|+..=. ...||-| .|.+|+...+ +.|..|.
T Consensus 13 ~~~~~C~~C~~~---G-~-ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c----------~C~~C~k~~~-~~C~~Cp 76 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-E-LVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWH----------QCDECSSAAV-SFCEFCP 76 (107)
T ss_dssp SSCSSCTTTCCC---S-E-EEECCSTTCCCEECTGGGTCSSCCSSCCCCGGG----------BCTTTCSBCC-EECSSSS
T ss_pred CCCCCCCcCCCC---C-c-EeEECCCCCCcccccccCcCCcCCCCCEECCCC----------CCCcCCCCCC-cCcCCCC
Confidence 556679999831 1 1 221 2 466899999986111 1235544 3556665544 6777777
Q ss_pred ceecc
Q 018432 238 FVGCG 242 (356)
Q Consensus 238 ~vGCg 242 (356)
..-|.
T Consensus 77 ~sfC~ 81 (107)
T 4gne_A 77 HSFCK 81 (107)
T ss_dssp CEECT
T ss_pred cchhh
Confidence 76664
No 312
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.00 E-value=19 Score=31.92 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCCCCccccccCCCCcceeeecCCCccchhhhhccc------cccccccccc
Q 018432 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRFC 212 (356)
Q Consensus 167 lptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~------~ssCPvCR~~ 212 (356)
...|.+|... + .-+.--.|...||..|+.... +..||.|+..
T Consensus 7 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4569999743 1 123334678999999986443 2357777653
No 313
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=36.86 E-value=12 Score=27.50 Aligned_cols=36 Identities=25% Similarity=0.617 Sum_probs=21.9
Q ss_pred CCCCCCCccccc-cCCCCcceeeecCCCccchhhhhcc
Q 018432 165 TELPTCPICLER-LDPDTSGILSTICDHSFQCSCTAKW 201 (356)
Q Consensus 165 ~elptCpICLe~-ld~~~sgilt~~C~H~FH~~Cl~kW 201 (356)
-+.++|.||..- |.++ .|-+-.-|+-.|...|--+|
T Consensus 7 ~d~~~C~iC~KTKFADG-~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG-CGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSCCCSS-CCEEBTTTCCEECTTSEEEE
T ss_pred CCcchhhhhccceeccC-CCccccccCCeeecccCCEe
Confidence 467899999874 5543 34444455555555555444
No 314
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=36.29 E-value=29 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.509 Sum_probs=21.0
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~k 200 (356)
.....|.+|.+. + .-+.--.|...||..|+..
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSS
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCC
Confidence 345679999752 1 1233346788999999863
No 315
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=34.53 E-value=31 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=17.3
Q ss_pred ceEEEEEeCChhhHHHHHh
Q 018432 107 RYSVLIKLVDQLTADEFYS 125 (356)
Q Consensus 107 ~ymvLikF~s~~~A~eF~~ 125 (356)
..+|+++|+|.++|.+|+.
T Consensus 54 ~~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 54 ARNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp SEEEEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHc
Confidence 3699999999999999976
No 316
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.21 E-value=19 Score=27.92 Aligned_cols=13 Identities=38% Similarity=1.012 Sum_probs=10.0
Q ss_pred CCCCccccccCCC
Q 018432 168 PTCPICLERLDPD 180 (356)
Q Consensus 168 ptCpICLe~ld~~ 180 (356)
..||.|-..|+.+
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4788898888764
No 317
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=32.88 E-value=1.7e+02 Score=23.58 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=45.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhccc------ccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHh
Q 018432 65 STCIFVVAVPNYLSSDEFVRFCGSH------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYS 125 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l~F~~~~------~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~ 125 (356)
-.++..+-|+.. ..+|+..+... ...-....+.|....|++|+++.+++|.++-+.+..
T Consensus 24 i~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~~p~~yv~~~~W~s~ea~~a~~~ 88 (128)
T 3kg0_A 24 VTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDAFRRALA 88 (128)
T ss_dssp EEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEEEEEECTTCSSEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEcCCCCCEEEEEEEECCHHHHHHHHc
Confidence 355667788887 88998765432 346777888886666899999999999998888765
No 318
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=32.61 E-value=22 Score=30.15 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=16.9
Q ss_pred CCCcccccCCC-----Cceeeeccccce
Q 018432 217 ERPTCSVCGTV-----ENLWVCLICGFV 239 (356)
Q Consensus 217 ~~~~C~~C~~~-----~nlWiCL~CG~v 239 (356)
..+.|..|+.. .++|+|..|++.
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred cCCCCCCCCCcceEecCCeEECCccccc
Confidence 34667777654 469999999985
No 319
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.59 E-value=29 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=19.8
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhhc
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~k 200 (356)
.|.+|.+.-+++..-+.--.|+..||..|+..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCC
Confidence 57777765322222233456889999999853
No 320
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=32.11 E-value=1.6e+02 Score=26.25 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=50.1
Q ss_pred CCCCceeeeeeEEEEccCCCCCc--CC-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEE-e-e--cCCCCcc
Q 018432 35 NPNPKFSERRGLVHLFRGTSQSY--QQ-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIF-I-R--NDAMEDR 107 (356)
Q Consensus 35 ~gnp~v~~~~G~vhl~r~~~~~~--~~-~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iri-i-r--~~~~~~~ 107 (356)
.++...+-+.|.|||.++..... +- ...+...+++=..|...|.+..- .++ .. .++. . . .++.+.-
T Consensus 63 ~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~---~~s---~k-s~v~~~~~d~ad~~~k~ 135 (201)
T 1k5d_B 63 DLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPN---AGS---DR-AWVWNTHADFADECPKP 135 (201)
T ss_dssp SSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCBC---SSC---SS-EEEEEEEEECTTSSCEE
T ss_pred cCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeeec---CCC---Cc-eEEEEeccccCCCCCce
Confidence 46778999999999998753221 10 00112345555556666654310 011 11 2222 1 1 1222233
Q ss_pred eEEEEEeCChhhHHHHHhhhcC
Q 018432 108 YSVLIKLVDQLTADEFYSNLNG 129 (356)
Q Consensus 108 ymvLikF~s~~~A~eF~~~~ng 129 (356)
-+.+|+|.+.+.|++|+..|+-
T Consensus 136 e~~~iRfks~e~A~~f~~~~ee 157 (201)
T 1k5d_B 136 ELLAIRFLNAENAQKFKTKFEE 157 (201)
T ss_dssp EEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHHHHH
Confidence 4789999999999999998764
No 321
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.82 E-value=44 Score=24.71 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccccccccccccc
Q 018432 158 STPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 158 ~~~~~~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
...+......+.|+.|-+.+... . ++. .-+..||..|. .|..|+..+
T Consensus 6 ~~~~~~~~~~~~C~~C~~~I~~~-~-~v~-a~~~~wH~~CF------~C~~C~~~L 52 (80)
T 2dj7_A 6 SGKPIKIRGPSHCAGCKEEIKHG-Q-SLL-ALDKQWHVSCF------KCQTCSVIL 52 (80)
T ss_dssp CCCCCCCSSCSCCTTTCCCCSSS-C-CEE-ETTEEECTTTC------BCSSSCCBC
T ss_pred CCCCcCCCCCCCCcCcCCeeCCC-e-EEE-ECCcccccccC------CcCcCCCCc
Confidence 34455566789999999998653 2 232 23678888776 677776644
No 322
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.61 E-value=55 Score=23.83 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
+....+.|+.|-+.+... ++ ..-+..||..|. .|..|+..+
T Consensus 11 ~~~~~~~C~~C~~~I~~~---~~-~a~~~~~H~~CF------~C~~C~~~L 51 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGV---FV-KLRDRHRHPECY------VCTDCGTNL 51 (79)
T ss_dssp CCCCCCCCSSSCCCCCSS---CE-ECSSCEECTTTT------SCSSSCCCH
T ss_pred CCCCCCccccCCCCccCc---EE-EECcceeCcCcC------eeCCCCCCC
Confidence 456789999999998752 33 234778998886 677777644
No 323
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=31.47 E-value=35 Score=26.35 Aligned_cols=38 Identities=16% Similarity=0.481 Sum_probs=23.7
Q ss_pred CCCCCCCCCCccccccCCCC-cceeeecCCCccchhhhh
Q 018432 162 AGFTELPTCPICLERLDPDT-SGILSTICDHSFQCSCTA 199 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~-sgilt~~C~H~FH~~Cl~ 199 (356)
+...+...|.||...-..+. .-+.--.|+-.||..|+.
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC
Confidence 34456789999987642211 112234677889998874
No 324
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.96 E-value=34 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.457 Sum_probs=23.8
Q ss_pred CCCCCCCCCcccccc-CCCCcceeeecCCCccchhhhh
Q 018432 163 GFTELPTCPICLERL-DPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 163 ~~~elptCpICLe~l-d~~~sgilt~~C~H~FH~~Cl~ 199 (356)
...+...|.||.+.- ++...-+.=-.|+-.||..|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 345677899998763 2221223334678899999984
No 325
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.47 E-value=2e+02 Score=22.70 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=47.5
Q ss_pred ccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCCC
Q 018432 65 STCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (356)
Q Consensus 65 ~~~lciLaVP~~ms~~d~l----~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fnsl 135 (356)
.++|.|-.+|-..+..++. +.++.+-..|..+ +.| -+.+.|.++++|..=.++.||..|..-
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG-----~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGC-----SAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTT-----CEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecC-----EEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 4558899999999998855 4555543356666 122 578999999999999999999998654
No 326
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=30.09 E-value=30 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~k 200 (356)
.+...|++|...-+.. .-|.--.|+..||..|+..
T Consensus 16 ~~~~~C~~C~~~~~~~-~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSC-CEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCC-CEEEcCCCCcccccccCCC
Confidence 3445699998775421 1223345778899999843
No 327
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.04 E-value=29 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.696 Sum_probs=19.6
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.|.||...-+.+ .-++=-.|+..||..|+.
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccC
Confidence 788888653332 223334678999999985
No 328
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=28.72 E-value=1.3e+02 Score=25.27 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=50.1
Q ss_pred CCCceeeeeeEEEEccCCCCCc--CC-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEe-ec--CCCCcceE
Q 018432 36 PNPKFSERRGLVHLFRGTSQSY--QQ-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFI-RN--DAMEDRYS 109 (356)
Q Consensus 36 gnp~v~~~~G~vhl~r~~~~~~--~~-~~~~~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~irii-r~--~~~~~~ym 109 (356)
.+..-+-+.|.+||.++..... +- ...+...+++=..|...|++... .++ + -.-+..+ .+ ++.|.--.
T Consensus 39 ~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~---~~s--~-k~~v~~~~~D~sdg~~~~~~ 112 (140)
T 4hat_B 39 AKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPN---VGS--D-RSWVYACTADIAEGEAEAFT 112 (140)
T ss_dssp TTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCTTCCCBCC---TTC--S-SEEEEEEEEECTTSSCEEEE
T ss_pred CCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecCCeEEeEc---CCC--C-ceEEEEccccCCCCCCceEE
Confidence 4578899999999998654321 10 11112355555566677764421 111 1 1112222 21 33332346
Q ss_pred EEEEeCChhhHHHHHhhhc
Q 018432 110 VLIKLVDQLTADEFYSNLN 128 (356)
Q Consensus 110 vLikF~s~~~A~eF~~~~n 128 (356)
.+|+|.+.+.|++|...|.
T Consensus 113 ~~iRfk~~e~A~~f~~~~e 131 (140)
T 4hat_B 113 FAIRFGSKENADKFKEEFE 131 (140)
T ss_dssp EEEEESSHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHH
Confidence 7999999999999998774
No 329
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=28.39 E-value=29 Score=25.63 Aligned_cols=30 Identities=33% Similarity=0.815 Sum_probs=17.3
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.|.+|...-+.+ .-+.=-.|+..||..|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSS
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCC
Confidence 455666543322 112223578999999985
No 330
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.86 E-value=16 Score=32.69 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=5.6
Q ss_pred eeeeccccc
Q 018432 230 LWVCLICGF 238 (356)
Q Consensus 230 lWiCL~CG~ 238 (356)
.|.|.+||.
T Consensus 186 p~~CP~C~~ 194 (202)
T 1yuz_A 186 FEKCPICFR 194 (202)
T ss_dssp CSBCTTTCC
T ss_pred CCCCCCCCC
Confidence 466666664
No 331
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=26.80 E-value=29 Score=27.78 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhc
Q 018432 336 ATQLETQRQVSTSF 349 (356)
Q Consensus 336 ~sqLe~Qr~yyE~~ 349 (356)
..|+|.+|.|||++
T Consensus 54 i~~~ee~R~~yE~L 67 (98)
T 3f1i_H 54 LNQLDERRLYYEGL 67 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999965
No 332
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.80 E-value=1.7e+02 Score=22.63 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcC
Q 018432 74 PNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (356)
Q Consensus 74 P~~ms~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng 129 (356)
+..++-.||..+++.+- .|..++|++. .+-...++|.+.+.|+.-....++
T Consensus 26 ~~~~te~~L~~~F~~~G-~V~~v~i~~~----~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYG-EVLNLVLSSK----KPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CCSCCHHHHHHHHHTTS-CEEEEEEESS----SSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCCHHHHHHHHHhcC-CEEEEEEccC----CCCEEEEEECCHHHHHHHHHhcCC
Confidence 45678889998887653 4888888852 344799999999999988776444
No 333
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.32 E-value=38 Score=24.24 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.0
Q ss_pred Cceeeeccccce
Q 018432 228 ENLWVCLICGFV 239 (356)
Q Consensus 228 ~nlWiCL~CG~v 239 (356)
...++|..||.|
T Consensus 28 ~ge~vC~~CGlV 39 (58)
T 1dl6_A 28 AGDMICPECGLV 39 (58)
T ss_dssp SCCEECTTTCCE
T ss_pred CCeEEeCCCCCE
Confidence 456888888876
No 334
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.88 E-value=47 Score=25.35 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=18.4
Q ss_pred CCcccccCCCCc--eeeeccccceeccC
Q 018432 218 RPTCSVCGTVEN--LWVCLICGFVGCGR 243 (356)
Q Consensus 218 ~~~C~~C~~~~n--lWiCL~CG~vGCgr 243 (356)
..+|..|...-. .+.|- ||...|+.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred CCcChhhCCcccccCeecC-CCCEechh
Confidence 457888877633 37888 99999984
No 335
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.75 E-value=49 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.543 Sum_probs=20.9
Q ss_pred CCCCCCccccccCCCCcceeeecCCCccchhhhhc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~k 200 (356)
....|.+|... + .-+.--.|...||..|+..
T Consensus 10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCCC---C-cEEECCCCChhhhhhccCC
Confidence 45679999863 1 2233346788999999854
No 336
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.39 E-value=1.1e+02 Score=24.30 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=42.9
Q ss_pred ccEEEEEecCC------CCC---HHHHHHHhcccccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhhhcCCcCCC
Q 018432 65 STCIFVVAVPN------YLS---SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (356)
Q Consensus 65 ~~~lciLaVP~------~ms---~~d~l~F~~~~~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~~ng~~Fns 134 (356)
+.+|.|-.+|+ ++. +.++++-++.+- .|..+||+.+. ..+.|++.++|..=-+ .||..++.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 35555655563 444 345666655543 58899999942 8999999999988777 99988764
No 337
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.37 E-value=24 Score=24.44 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=9.2
Q ss_pred ceeeeccccce
Q 018432 229 NLWVCLICGFV 239 (356)
Q Consensus 229 nlWiCL~CG~v 239 (356)
..|+|.+||+|
T Consensus 3 ~~y~C~vCGyv 13 (46)
T 6rxn_A 3 QKYVCNVCGYE 13 (46)
T ss_dssp CCEEETTTCCE
T ss_pred CEEECCCCCeE
Confidence 36999999987
No 338
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.70 E-value=68 Score=34.24 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=46.2
Q ss_pred CcccccCCCC--ceeeeccccceeccC---CCCcHHhhhhhhcCCe-eeEeCC----CceEEEccCCc---eeecccccc
Q 018432 219 PTCSVCGTVE--NLWVCLICGFVGCGR---YKEGHAVRHWKDTQHW-YSLDLR----TQQIWDYVGDN---YVHRLNQSK 285 (356)
Q Consensus 219 ~~C~~C~~~~--nlWiCL~CG~vGCgr---~~~~HA~~H~~~t~H~-~al~l~----t~~VwcY~cd~---yVHrl~q~k 285 (356)
..|.-||..+ .+--|++|+.=.|-- ....|...|...++|- +.+.-+ .-.+=||.|.. |+=-.+..|
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~~ 91 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAK 91 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC--
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeecc
Confidence 4566666663 466677776666632 2467999999999885 555533 34566999875 333346778
Q ss_pred cCCceeeecC
Q 018432 286 ADGKLVEMNS 295 (356)
Q Consensus 286 ~dgklvel~~ 295 (356)
+|+.+|=+..
T Consensus 92 ~~~~~~~~cr 101 (802)
T 2xzl_A 92 SEAVVVLLCR 101 (802)
T ss_dssp ----CEEEET
T ss_pred CCceEEEEeC
Confidence 8877777655
No 339
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.63 E-value=69 Score=22.60 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=26.7
Q ss_pred CCCCCCccccccCCCCcceeeecCCCccchhhhhcccccccccccccc
Q 018432 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 166 elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
..+.|+.|-+.+..+.. ++ ..-+..||..|. .|..|+..+
T Consensus 4 ~~~~C~~C~~~I~~~~~-~~-~a~~~~~H~~CF------~C~~C~~~L 43 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGA-GV-VALDRVFHVGCF------VCSTCRAQL 43 (72)
T ss_dssp CCCCCSSSCSCCCSSSC-CE-ECSSSEECTTTC------BCSSSCCBC
T ss_pred CCCCCccCCCccCCCce-EE-EECCCeEcccCC------cccccCCcC
Confidence 46789999998875322 22 233678888775 577776644
No 340
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=24.52 E-value=48 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=17.9
Q ss_pred CCCccccccCCCCcceeee-cCCCccchhhhh
Q 018432 169 TCPICLERLDPDTSGILST-ICDHSFQCSCTA 199 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~-~C~H~FH~~Cl~ 199 (356)
.|.+|....+++..=|.=- .|+.-||..|+.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccC
Confidence 5788888776432111112 455578887774
No 341
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=24.41 E-value=1.1e+02 Score=22.82 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=34.7
Q ss_pred HHHHHHHhccc------ccceeEEEEeecCCCCcceEEEEEeCChhhHHHHHhh
Q 018432 79 SDEFVRFCGSH------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSN 126 (356)
Q Consensus 79 ~~d~l~F~~~~------~~~i~~iriir~~~~~~~ymvLikF~s~~~A~eF~~~ 126 (356)
..+|+..+... ...-....+.|+...|++|+++.+|+|.++.+.|...
T Consensus 15 ~~~f~~~~~~~~~~~~~~pG~l~~~l~~~~~~~~~~~~~~~W~s~~a~~a~~~s 68 (106)
T 1iuj_A 15 AEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTES 68 (106)
T ss_dssp HHHHHHHHHHHGGGGTTSTTEEEEEEEEESSTTSCEEEEEEESCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEecCCCCCeEEEEEEECCHHHHHHHhcC
Confidence 35666554322 3456778888865568999999999999999888544
No 342
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.19 E-value=39 Score=27.79 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=45.0
Q ss_pred cCCCCceeeeeeEEEEccCCCCCc-CCC-CCC-CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEee--c---CCCC
Q 018432 34 ANPNPKFSERRGLVHLFRGTSQSY-QQN-PNS-RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIR--N---DAME 105 (356)
Q Consensus 34 ~~gnp~v~~~~G~vhl~r~~~~~~-~~~-~~~-~~~~lciLaVP~~ms~~d~l~F~~~~~~~i~~iriir--~---~~~~ 105 (356)
+.++..-|-+.|.+||-+...... +-. ..+ -..+++=..|...|.+.. .+. ..++++- + ++.+
T Consensus 25 ~~~~~WkERGvG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~----~g~-----~~~~~~~~~~~~~d~~~ 95 (125)
T 2ec1_A 25 KKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTR----TGK-----NNVLIVCVPNPPIDEKN 95 (125)
T ss_dssp ECSSSEEEEEEEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCSSCCEEC----CTT-----TEEEEEECCSSCSCSSS
T ss_pred ecCCCcccccEEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcCCCeEEe----cCC-----CcEEEEEccCCcccCCC
Confidence 456789999999999977532110 000 000 012222223334444331 011 1222222 1 2211
Q ss_pred --cceEEEEEeCChhhHHHHHhhhc
Q 018432 106 --DRYSVLIKLVDQLTADEFYSNLN 128 (356)
Q Consensus 106 --~~ymvLikF~s~~~A~eF~~~~n 128 (356)
---..+|+|.+.+.|++|+..++
T Consensus 96 ~~~~~~~~lrfk~~e~a~~f~~~~~ 120 (125)
T 2ec1_A 96 ATMPVTMLIRVKTSEDADELHKILL 120 (125)
T ss_dssp SSSCEEEEEECSSHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCHHHHHHHHHHHH
Confidence 13478999999999999998775
No 343
>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5
Probab=23.96 E-value=1.1e+02 Score=24.11 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=38.8
Q ss_pred EEecCCCCCHHHHHHHhccc-----ccceeEEEEeecCC--CCcceEEEEEeCChhhHHHHHhh
Q 018432 70 VVAVPNYLSSDEFVRFCGSH-----IDHVEELIFIRNDA--MEDRYSVLIKLVDQLTADEFYSN 126 (356)
Q Consensus 70 iLaVP~~ms~~d~l~F~~~~-----~~~i~~iriir~~~--~~~~ymvLikF~s~~~A~eF~~~ 126 (356)
.+-|+.- .-.+|...+... ...-..+.++|... .+++|+++..++|.++-+.|...
T Consensus 13 ~~~V~~g-~~~~fe~~~~~~~~l~~~pGFi~~~llr~~~~~~~~~y~~~~~W~s~eaf~aw~~S 75 (114)
T 1tz0_A 13 TFTVKEG-TSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVMIRWESEEAWKNWETS 75 (114)
T ss_dssp EEEECTT-CHHHHHHHTCSCCSGGGBTTEEEEEEEECCCSSSSEEEEEEEEESCHHHHHHHHTC
T ss_pred EEEECCC-cHHHHHHHHhccchhhcCCCeeEEEEEEcCCCCCCcEEEEEEEECCHHHHHHHHcC
Confidence 3444443 246777765432 23456788888665 57899999999999998888664
No 344
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.83 E-value=57 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhhc
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~k 200 (356)
.....|.+|... + .-+.--.|...||..|+..
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSS
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCC
Confidence 456679999874 1 2234456788999988853
No 345
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=23.54 E-value=46 Score=28.04 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=17.8
Q ss_pred cceEEEEEeCChhhHHHHHh
Q 018432 106 DRYSVLIKLVDQLTADEFYS 125 (356)
Q Consensus 106 ~~ymvLikF~s~~~A~eF~~ 125 (356)
..-+|||+|+|.++|.+||.
T Consensus 87 ~~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 87 WDHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp CSEEEEEEESCHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHc
Confidence 35699999999999999976
No 346
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=23.25 E-value=39 Score=30.94 Aligned_cols=30 Identities=33% Similarity=0.815 Sum_probs=15.4
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.|.+|...=+.+ .-+.--.|+..||..|+.
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~ 205 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLD 205 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCC
Confidence 466666542222 122334677889988875
No 347
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.18 E-value=45 Score=23.79 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=15.6
Q ss_pred CCCCCCCCCCccccccCCCC
Q 018432 162 AGFTELPTCPICLERLDPDT 181 (356)
Q Consensus 162 ~~~~elptCpICLe~ld~~~ 181 (356)
+.+.++-.||+|...|..+.
T Consensus 5 ~~lL~iL~CP~c~~~L~~~~ 24 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEERD 24 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEET
T ss_pred HHHHhheeCCCCCCcceecC
Confidence 45678889999999877643
No 348
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.83 E-value=44 Score=24.08 Aligned_cols=37 Identities=19% Similarity=0.547 Sum_probs=25.4
Q ss_pred CCCCccccccCCCCcceeeecCCCccchhhhhcccccccccccccc
Q 018432 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 168 ptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
|.|+.|-+.+..+ . .+.. -+..||..|. .|..|+..+
T Consensus 1 p~C~~C~~~I~~~-~-~v~a-~~~~~H~~CF------~C~~C~~~L 37 (76)
T 1iml_A 1 PKCPKCDKEVYFA-E-RVTS-LGKDWHRPCL------KCEKCGKTL 37 (76)
T ss_dssp CBCTTTSSBCCGG-G-EEEE-TTEEEETTTC------BCTTTCCBC
T ss_pred CcCCCCCCEEECc-e-EEEE-CCccccCCCC------CccccCccC
Confidence 6899999988753 2 3333 3778888876 577777644
No 349
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=22.03 E-value=32 Score=26.40 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=14.6
Q ss_pred cccccccccccc--------CCCCcccccCCC
Q 018432 204 LSCQVCRFCHQQ--------DERPTCSVCGTV 227 (356)
Q Consensus 204 ssCPvCR~~~~~--------~~~~~C~~C~~~ 227 (356)
..||+|++.... .+.+.|..||..
T Consensus 18 WVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred eECccccccCcCccccCCCCCCCCcccccCcc
Confidence 379999986532 234556666654
No 350
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=21.44 E-value=40 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=11.1
Q ss_pred HHHHHHhhhc--cCCCCC
Q 018432 340 ETQRQVSTSF--PDVKTP 355 (356)
Q Consensus 340 e~Qr~yyE~~--l~~~~~ 355 (356)
|+|++||... |.-+.|
T Consensus 2 ~~Qkk~y~amkKl~~kkp 19 (35)
T 4djc_B 2 NAQKKYYNAMKKLGSKKP 19 (35)
T ss_pred HhHHHHHHHHHHHcccCC
Confidence 7899999844 444444
No 351
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.06 E-value=20 Score=27.52 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=31.5
Q ss_pred CCCCCCCCccccccCCCCcceeeecCCCccchhhhhccccccccccccccccCCCCcccccCCC--Cceeeeccccc
Q 018432 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTV--ENLWVCLICGF 238 (356)
Q Consensus 164 ~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~~~~~~~~C~~C~~~--~nlWiCL~CG~ 238 (356)
....-.|..|.+.|.- +.. ....|+.|++ ..|..|... ...|+|-+|-.
T Consensus 22 ~~~~r~CarC~~~LG~----l~~---------------~g~~C~~Ck~-------rVC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 22 HYSDRTCARCQESLGR----LSP---------------KTNTCRGCNH-------LVCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp TCCCCBCSSSCCBCSS----SCT---------------TTSEETTTTE-------ECCTTSEEECSTTCEEEHHHHS
T ss_pred CCCccchhhhCccccc----ccc---------------CCCcCcccCh-------hhcccccccCCCCCEEEeeCch
Confidence 3456688888888753 111 1246777776 247777654 36899988854
No 352
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.00 E-value=1.1e+02 Score=22.57 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=27.6
Q ss_pred CCCCCCCCCccccccCCCCcceeeecCCCccchhhhhcccccccccccccc
Q 018432 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (356)
Q Consensus 163 ~~~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~kW~~ssCPvCR~~~ 213 (356)
.....+.|+.|-..+... . .+. .-+..||..|. .|-.|+..+
T Consensus 11 ~~~~~~~C~~C~~~I~~~-e-~v~-a~~~~wH~~CF------~C~~C~~~L 52 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVL-E-RLC-VNGHFFHRSCF------RCHTCEATL 52 (82)
T ss_dssp CCCSSCBCSSSCCBCCTT-T-BCC-BTTBCCBTTTC------BCSSSCCBC
T ss_pred CCCCCCCCcccCCCcccc-e-EEE-ECCCeeCCCcC------EEcCCCCCc
Confidence 345678999999998542 2 222 34678898885 577776543
No 353
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.83 E-value=63 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.515 Sum_probs=19.8
Q ss_pred CCCccccccCCCCcceeeecCCCccchhhhhc
Q 018432 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (356)
Q Consensus 169 tCpICLe~ld~~~sgilt~~C~H~FH~~Cl~k 200 (356)
.|.+|...-++. .-+.--.|+..||..|+..
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~p 86 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQP 86 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSS
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCC
Confidence 466776654432 2233457789999999853
No 354
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=20.65 E-value=57 Score=26.98 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEEEEeCChhhHHHHHhhh
Q 018432 109 SVLIKLVDQLTADEFYSNL 127 (356)
Q Consensus 109 mvLikF~s~~~A~eF~~~~ 127 (356)
++||+|.+..++..|++..
T Consensus 84 slLl~Fas~~d~~~F~~~l 102 (117)
T 2oqb_A 84 SVLIQFATPHDFCSFYNIL 102 (117)
T ss_dssp EEEEECSSHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHH
Confidence 8999999999999998753
No 355
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.26 E-value=31 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=20.6
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.+...| +|....+++..=|.--.|...||..|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcC
Confidence 455678 9988765432112223567788988884
No 356
>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A
Probab=20.25 E-value=1.5e+02 Score=22.60 Aligned_cols=48 Identities=6% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHHHhccc-----ccceeEEEEeecCCCCc--ceEEEEEeCChhhHHHHHhh
Q 018432 79 SDEFVRFCGSH-----IDHVEELIFIRNDAMED--RYSVLIKLVDQLTADEFYSN 126 (356)
Q Consensus 79 ~~d~l~F~~~~-----~~~i~~iriir~~~~~~--~ymvLikF~s~~~A~eF~~~ 126 (356)
..+|+..+... ...-..+.++|....|+ +|+++..++|+++-+.|...
T Consensus 18 ~~~f~~~~~~~~~~~~~pG~i~~~l~r~~~~~~~~~~~~~~~W~s~ea~~a~~~s 72 (109)
T 2zdo_A 18 AKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKS 72 (109)
T ss_dssp HHHHHHHTTSCCSGGGCTTEEEEEEEEETTCSSEEEEEEEEEESCHHHHHHHHTS
T ss_pred HHHHHHHHhcccccccCCCeEEEEEEecCCCCCceEEEEEEEECCHHHHHHHHcC
Confidence 46777765442 23567788888766676 99999999999988877543
No 357
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.20 E-value=90 Score=22.43 Aligned_cols=31 Identities=19% Similarity=0.526 Sum_probs=21.2
Q ss_pred CCCCCCCccccccCCCCcceeeecCCCccchhhhh
Q 018432 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (356)
Q Consensus 165 ~elptCpICLe~ld~~~sgilt~~C~H~FH~~Cl~ 199 (356)
.....|.||.+. + .-+.--.|...||..|+.
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLS 36 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSS
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccC
Confidence 356689999863 1 223344678899999986
No 358
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=20.06 E-value=90 Score=24.98 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCccccccCCCCcceeeecC-CCccchhhhhccc--ccccccccccc
Q 018432 159 TPPAGFTELPTCPICLERLDPDTSGILSTIC-DHSFQCSCTAKWT--VLSCQVCRFCH 213 (356)
Q Consensus 159 ~~~~~~~elptCpICLe~ld~~~sgilt~~C-~H~FH~~Cl~kW~--~ssCPvCR~~~ 213 (356)
.+++++.---.|-.||-..+ |++ .| +|-....|+...+ ...||+|.+.+
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k----~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENK----GLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCS----SEE--ECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred cCCccccCcccChhhccccC----Cee--eecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 45667777889999998765 344 45 7999999998887 56899999865
No 359
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=20.04 E-value=70 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHH
Q 018432 321 NSKVEAIVDEYNRLLATQ 338 (356)
Q Consensus 321 ~~K~e~~~~ey~~ll~sq 338 (356)
+.|+|.|..-|+.+|..|
T Consensus 30 d~KLd~l~~~~~~~l~~~ 47 (49)
T 3bj4_A 30 DQRLALITDMLHQLLSLH 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 689999999999998876
Done!