Query 018433
Match_columns 356
No_of_seqs 183 out of 1430
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 2.2E-69 4.8E-74 515.7 33.2 309 45-354 1-310 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 4.2E-69 9E-74 514.6 32.9 310 46-355 1-311 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 4.8E-68 1E-72 501.6 31.1 297 45-355 1-312 (313)
4 PLN00106 malate dehydrogenase 100.0 2.8E-67 6E-72 503.9 35.5 316 33-348 7-322 (323)
5 cd05290 LDH_3 A subgroup of L- 100.0 5.5E-65 1.2E-69 486.1 30.7 286 46-347 1-306 (307)
6 PTZ00325 malate dehydrogenase; 100.0 2.6E-64 5.7E-69 482.9 34.8 313 42-356 6-319 (321)
7 cd05293 LDH_1 A subgroup of L- 100.0 8.7E-64 1.9E-68 479.2 31.9 291 43-348 2-311 (312)
8 TIGR01759 MalateDH-SF1 malate 100.0 9.6E-64 2.1E-68 480.1 31.0 296 42-350 1-323 (323)
9 PRK05086 malate dehydrogenase; 100.0 7.3E-63 1.6E-67 473.2 34.7 310 45-356 1-312 (312)
10 PLN02602 lactate dehydrogenase 100.0 6E-63 1.3E-67 478.7 32.8 291 45-350 38-348 (350)
11 KOG1495 Lactate dehydrogenase 100.0 2.5E-63 5.5E-68 449.6 27.8 292 44-351 20-330 (332)
12 PRK00066 ldh L-lactate dehydro 100.0 5.5E-62 1.2E-66 467.7 32.2 292 43-350 5-313 (315)
13 PRK05442 malate dehydrogenase; 100.0 3E-62 6.5E-67 470.3 30.3 299 42-353 2-325 (326)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 1.5E-62 3.3E-67 468.3 27.5 281 49-345 1-299 (299)
15 PLN00112 malate dehydrogenase 100.0 1.4E-61 3E-66 478.7 31.8 301 41-354 97-424 (444)
16 TIGR01757 Malate-DH_plant mala 100.0 2.7E-61 5.9E-66 470.2 31.7 300 42-354 42-368 (387)
17 cd00704 MDH Malate dehydrogena 100.0 3.4E-61 7.3E-66 463.1 29.3 294 45-351 1-323 (323)
18 PTZ00117 malate dehydrogenase; 100.0 4.7E-60 1E-64 455.5 34.0 297 42-352 3-316 (319)
19 cd01338 MDH_choloroplast_like 100.0 1.8E-60 4E-65 457.8 30.7 295 43-350 1-320 (322)
20 cd05291 HicDH_like L-2-hydroxy 100.0 1.9E-60 4E-65 456.4 30.7 288 45-348 1-305 (306)
21 KOG1494 NAD-dependent malate d 100.0 2E-60 4.3E-65 432.7 29.0 337 8-355 3-340 (345)
22 cd00300 LDH_like L-lactate deh 100.0 4.4E-60 9.6E-65 452.3 29.6 286 47-347 1-299 (300)
23 PTZ00082 L-lactate dehydrogena 100.0 1.9E-59 4E-64 451.1 33.0 293 43-349 5-319 (321)
24 TIGR01763 MalateDH_bact malate 100.0 2.1E-59 4.5E-64 448.2 30.6 290 45-348 2-303 (305)
25 cd05292 LDH_2 A subgroup of L- 100.0 3.2E-58 7E-63 441.0 31.9 288 45-348 1-306 (308)
26 TIGR01758 MDH_euk_cyt malate d 100.0 2.1E-58 4.6E-63 443.8 30.6 296 46-351 1-323 (324)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 5.4E-58 1.2E-62 441.7 29.3 296 43-351 1-325 (325)
28 cd05294 LDH-like_MDH_nadp A la 100.0 5.7E-56 1.2E-60 425.4 31.7 291 45-349 1-308 (309)
29 cd01339 LDH-like_MDH L-lactate 100.0 5.4E-56 1.2E-60 424.5 30.9 287 47-347 1-299 (300)
30 cd05295 MDH_like Malate dehydr 100.0 1.7E-56 3.7E-61 442.2 27.3 293 42-350 121-450 (452)
31 PRK06223 malate dehydrogenase; 100.0 1.1E-55 2.4E-60 423.5 31.7 292 44-349 2-305 (307)
32 PLN00135 malate dehydrogenase 100.0 4.9E-56 1.1E-60 423.7 28.3 272 72-355 15-309 (309)
33 TIGR01756 LDH_protist lactate 100.0 3.5E-55 7.6E-60 418.8 28.4 271 72-354 17-312 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 9E-52 1.9E-56 388.3 28.9 254 47-347 1-262 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 2.9E-49 6.3E-54 352.8 21.7 305 42-355 2-331 (332)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1.9E-33 4.1E-38 248.5 14.7 159 190-354 1-174 (174)
37 cd05197 GH4_glycoside_hydrolas 100.0 1.2E-31 2.7E-36 266.5 26.0 282 45-350 1-391 (425)
38 PF00056 Ldh_1_N: lactate/mala 100.0 4.1E-33 8.9E-38 238.0 12.4 139 45-188 1-141 (141)
39 PRK15076 alpha-galactosidase; 100.0 2.4E-31 5.3E-36 265.1 25.2 288 44-350 1-385 (431)
40 cd05296 GH4_P_beta_glucosidase 100.0 5.2E-31 1.1E-35 261.5 27.3 286 45-350 1-380 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 8.4E-29 1.8E-33 246.6 28.9 289 45-350 1-394 (437)
42 COG1486 CelF Alpha-galactosida 100.0 7.1E-28 1.5E-32 235.6 24.7 292 43-350 2-397 (442)
43 cd05297 GH4_alpha_glucosidase_ 100.0 4.4E-27 9.6E-32 234.6 27.9 288 45-350 1-388 (423)
44 PF02056 Glyco_hydro_4: Family 99.9 2.7E-21 5.8E-26 170.8 14.3 152 46-207 1-183 (183)
45 COG1004 Ugd Predicted UDP-gluc 98.9 1.3E-07 2.7E-12 92.1 17.1 114 45-171 1-131 (414)
46 PF02737 3HCDH_N: 3-hydroxyacy 98.7 2.8E-08 6.1E-13 88.3 8.0 117 46-190 1-136 (180)
47 COG1250 FadB 3-hydroxyacyl-CoA 98.7 6.7E-08 1.5E-12 92.3 10.1 122 44-190 3-140 (307)
48 PRK07066 3-hydroxybutyryl-CoA 98.6 7.2E-07 1.6E-11 86.2 12.7 118 45-189 8-140 (321)
49 PF03721 UDPG_MGDP_dh_N: UDP-g 98.5 1.8E-07 4E-12 83.4 7.1 133 45-193 1-151 (185)
50 TIGR02441 fa_ox_alpha_mit fatt 98.5 6.1E-07 1.3E-11 95.8 11.3 118 44-189 335-471 (737)
51 TIGR02437 FadB fatty oxidation 98.5 5.7E-07 1.2E-11 95.8 10.8 120 43-190 312-450 (714)
52 PRK08293 3-hydroxybutyryl-CoA 98.5 1.4E-06 3.1E-11 82.9 11.9 119 44-189 3-141 (287)
53 TIGR01915 npdG NADPH-dependent 98.5 2.9E-06 6.2E-11 77.6 13.4 128 45-194 1-145 (219)
54 TIGR02440 FadJ fatty oxidation 98.5 3.7E-06 8.1E-11 89.5 16.0 119 44-190 304-442 (699)
55 PRK11730 fadB multifunctional 98.5 2.3E-06 5.1E-11 91.2 14.3 117 45-189 314-449 (715)
56 PRK07819 3-hydroxybutyryl-CoA 98.4 1.6E-06 3.6E-11 82.5 11.4 118 45-190 6-143 (286)
57 PRK11154 fadJ multifunctional 98.4 2.7E-06 5.8E-11 90.7 12.9 119 44-190 309-447 (708)
58 KOG2304 3-hydroxyacyl-CoA dehy 98.4 5.7E-07 1.2E-11 81.2 5.7 122 43-190 10-154 (298)
59 COG1086 Predicted nucleoside-d 98.3 8.3E-06 1.8E-10 82.8 14.0 124 43-167 249-386 (588)
60 PRK05808 3-hydroxybutyryl-CoA 98.3 8.7E-06 1.9E-10 77.2 13.4 118 45-190 4-140 (282)
61 PF02719 Polysacc_synt_2: Poly 98.3 4.6E-07 1E-11 85.9 4.3 120 47-167 1-138 (293)
62 PRK06035 3-hydroxyacyl-CoA deh 98.3 3.9E-06 8.4E-11 80.0 10.6 118 45-190 4-143 (291)
63 PF01210 NAD_Gly3P_dh_N: NAD-d 98.3 1.8E-06 3.8E-11 74.9 7.0 94 46-161 1-103 (157)
64 PLN02353 probable UDP-glucose 98.3 9.9E-06 2.2E-10 82.3 12.6 119 44-170 1-137 (473)
65 PLN02166 dTDP-glucose 4,6-dehy 98.2 1.4E-05 3E-10 80.7 13.1 171 44-220 120-297 (436)
66 PF01073 3Beta_HSD: 3-beta hyd 98.2 1.2E-05 2.6E-10 76.3 11.2 116 48-165 1-118 (280)
67 PRK15181 Vi polysaccharide bio 98.2 5E-05 1.1E-09 74.0 15.0 167 44-220 15-199 (348)
68 PRK07530 3-hydroxybutyryl-CoA 98.2 8.2E-06 1.8E-10 77.8 9.2 120 44-191 4-142 (292)
69 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 8.5E-06 1.8E-10 83.5 9.6 121 43-190 4-142 (503)
70 PLN02427 UDP-apiose/xylose syn 98.1 2.7E-05 5.9E-10 76.9 12.8 114 43-162 13-136 (386)
71 PRK06130 3-hydroxybutyryl-CoA 98.1 1.5E-05 3.2E-10 76.6 10.4 119 45-190 5-137 (311)
72 PRK08268 3-hydroxy-acyl-CoA de 98.1 1.4E-05 2.9E-10 82.2 10.7 118 45-190 8-144 (507)
73 PRK09260 3-hydroxybutyryl-CoA 98.1 2.6E-05 5.6E-10 74.2 10.2 99 45-165 2-119 (288)
74 TIGR02622 CDP_4_6_dhtase CDP-g 98.1 0.00013 2.9E-09 70.9 15.3 176 42-220 2-193 (349)
75 PLN00198 anthocyanidin reducta 98.0 0.00012 2.5E-09 70.9 14.8 175 44-220 9-202 (338)
76 PLN02650 dihydroflavonol-4-red 98.0 0.0001 2.2E-09 71.7 14.4 178 41-220 2-197 (351)
77 PRK06129 3-hydroxyacyl-CoA deh 98.0 3.1E-05 6.6E-10 74.5 10.5 103 44-167 2-122 (308)
78 PLN02545 3-hydroxybutyryl-CoA 98.0 6.6E-05 1.4E-09 71.6 12.3 103 45-167 5-123 (295)
79 PRK07531 bifunctional 3-hydrox 98.0 4.7E-05 1E-09 78.0 11.7 103 45-168 5-121 (495)
80 PLN02206 UDP-glucuronate decar 98.0 7.2E-05 1.6E-09 75.6 12.9 111 44-162 119-233 (442)
81 PLN02662 cinnamyl-alcohol dehy 98.0 0.00017 3.6E-09 69.0 14.4 115 44-161 4-126 (322)
82 PRK08125 bifunctional UDP-gluc 98.0 7.2E-05 1.6E-09 79.3 12.9 179 30-220 304-497 (660)
83 COG0240 GpsA Glycerol-3-phosph 98.0 0.00012 2.6E-09 70.5 12.9 117 44-189 1-131 (329)
84 TIGR01181 dTDP_gluc_dehyt dTDP 97.9 0.00019 4.1E-09 67.9 13.6 166 46-219 1-183 (317)
85 COG2085 Predicted dinucleotide 97.9 0.00013 2.9E-09 65.8 11.3 97 44-165 1-97 (211)
86 TIGR03026 NDP-sugDHase nucleot 97.9 0.00019 4.1E-09 71.8 13.6 119 45-177 1-137 (411)
87 PF03807 F420_oxidored: NADP o 97.9 6.1E-05 1.3E-09 59.3 7.6 94 46-163 1-96 (96)
88 KOG1502 Flavonol reductase/cin 97.8 0.0003 6.5E-09 67.7 13.2 118 43-165 5-131 (327)
89 CHL00194 ycf39 Ycf39; Provisio 97.8 8.8E-05 1.9E-09 71.3 9.1 108 45-161 1-109 (317)
90 PRK11908 NAD-dependent epimera 97.8 0.00018 3.9E-09 69.9 11.3 110 44-162 1-118 (347)
91 PRK15057 UDP-glucose 6-dehydro 97.8 0.00023 5E-09 70.7 12.0 114 45-170 1-127 (388)
92 PRK06522 2-dehydropantoate 2-r 97.8 0.00037 8.1E-09 66.3 13.1 102 45-168 1-107 (304)
93 TIGR03589 PseB UDP-N-acetylglu 97.8 0.00021 4.5E-09 69.1 11.4 113 44-161 4-124 (324)
94 PTZ00345 glycerol-3-phosphate 97.8 0.00019 4.2E-09 70.6 11.1 107 29-161 2-129 (365)
95 PRK12921 2-dehydropantoate 2-r 97.8 0.00017 3.8E-09 68.7 10.1 120 45-193 1-128 (305)
96 PRK00094 gpsA NAD(P)H-dependen 97.7 0.00024 5.3E-09 68.3 11.0 101 44-166 1-110 (325)
97 PLN02214 cinnamoyl-CoA reducta 97.7 0.00058 1.3E-08 66.5 13.6 110 44-161 10-126 (342)
98 PRK10084 dTDP-glucose 4,6 dehy 97.7 0.00071 1.5E-08 65.7 13.8 176 45-221 1-202 (352)
99 PLN02989 cinnamyl-alcohol dehy 97.7 0.0011 2.4E-08 63.6 14.9 175 44-220 5-198 (325)
100 PRK10217 dTDP-glucose 4,6-dehy 97.7 0.00082 1.8E-08 65.3 14.2 176 45-221 2-195 (355)
101 PRK15182 Vi polysaccharide bio 97.7 0.00085 1.8E-08 67.5 14.4 120 41-176 3-136 (425)
102 PRK08229 2-dehydropantoate 2-r 97.7 0.00047 1E-08 67.0 11.9 101 44-167 2-113 (341)
103 TIGR03466 HpnA hopanoid-associ 97.7 0.00041 9E-09 66.1 11.4 112 45-162 1-113 (328)
104 PRK14620 NAD(P)H-dependent gly 97.7 0.00034 7.3E-09 67.7 10.6 98 45-166 1-111 (326)
105 PLN02695 GDP-D-mannose-3',5'-e 97.6 0.00021 4.5E-09 70.5 8.9 170 43-221 20-202 (370)
106 PRK06194 hypothetical protein; 97.6 0.0017 3.8E-08 60.9 14.9 159 44-218 6-192 (287)
107 PRK14619 NAD(P)H-dependent gly 97.6 0.00036 7.8E-09 67.1 10.3 79 43-162 3-83 (308)
108 PLN02896 cinnamyl-alcohol dehy 97.6 0.00059 1.3E-08 66.5 11.8 173 43-220 9-210 (353)
109 PLN02778 3,5-epimerase/4-reduc 97.6 0.001 2.2E-08 63.6 13.2 91 42-154 7-104 (298)
110 PF03446 NAD_binding_2: NAD bi 97.6 0.00036 7.8E-09 60.8 9.1 65 44-120 1-65 (163)
111 PRK12439 NAD(P)H-dependent gly 97.6 0.00041 8.8E-09 67.8 10.3 100 42-166 5-116 (341)
112 PLN02986 cinnamyl-alcohol dehy 97.6 0.0019 4.1E-08 61.9 14.7 116 44-161 5-127 (322)
113 PRK10675 UDP-galactose-4-epime 97.6 0.00076 1.7E-08 64.9 12.0 113 45-161 1-123 (338)
114 COG0451 WcaG Nucleoside-diphos 97.6 0.00058 1.3E-08 64.6 10.9 167 45-222 1-178 (314)
115 COG1087 GalE UDP-glucose 4-epi 97.6 0.0014 2.9E-08 62.3 12.9 162 45-218 1-174 (329)
116 PRK11064 wecC UDP-N-acetyl-D-m 97.6 0.001 2.3E-08 66.7 13.1 109 44-170 3-129 (415)
117 TIGR01472 gmd GDP-mannose 4,6- 97.6 0.0017 3.7E-08 62.9 14.3 155 45-208 1-177 (343)
118 PRK06249 2-dehydropantoate 2-r 97.6 0.00059 1.3E-08 65.7 10.6 121 42-189 3-127 (313)
119 PLN03209 translocon at the inn 97.5 0.00086 1.9E-08 69.4 12.2 116 43-161 79-207 (576)
120 PLN02260 probable rhamnose bio 97.5 0.0017 3.6E-08 69.0 14.9 181 41-221 3-194 (668)
121 PLN02583 cinnamoyl-CoA reducta 97.5 0.0021 4.5E-08 61.2 13.7 113 45-161 7-127 (297)
122 PRK14618 NAD(P)H-dependent gly 97.5 0.001 2.2E-08 64.5 11.6 98 43-165 3-108 (328)
123 PF13460 NAD_binding_10: NADH( 97.5 0.0013 2.9E-08 57.4 11.3 93 47-161 1-97 (183)
124 TIGR01777 yfcH conserved hypot 97.5 0.00046 1E-08 64.7 8.8 100 47-155 1-104 (292)
125 TIGR03376 glycerol3P_DH glycer 97.5 0.00042 9.2E-09 67.7 8.7 96 46-161 1-116 (342)
126 PRK09987 dTDP-4-dehydrorhamnos 97.5 0.00048 1E-08 65.7 8.5 99 45-161 1-103 (299)
127 KOG1429 dTDP-glucose 4-6-dehyd 97.5 0.00029 6.3E-09 66.1 6.7 114 42-161 25-140 (350)
128 PLN02572 UDP-sulfoquinovose sy 97.5 0.0015 3.3E-08 66.0 12.5 177 42-221 45-263 (442)
129 PLN02653 GDP-mannose 4,6-dehyd 97.4 0.0013 2.9E-08 63.6 11.4 164 40-208 2-183 (340)
130 PF11975 Glyco_hydro_4C: Famil 97.4 0.0013 2.8E-08 60.7 9.8 78 265-351 134-215 (232)
131 PRK07417 arogenate dehydrogena 97.3 0.0019 4E-08 61.3 10.4 64 45-120 1-65 (279)
132 PRK12549 shikimate 5-dehydroge 97.3 0.0016 3.5E-08 62.0 10.0 76 42-122 125-204 (284)
133 PRK14982 acyl-ACP reductase; P 97.3 0.0016 3.5E-08 63.4 10.1 98 42-167 153-252 (340)
134 COG1748 LYS9 Saccharopine dehy 97.3 0.0025 5.5E-08 63.0 11.5 76 44-122 1-78 (389)
135 PLN02253 xanthoxin dehydrogena 97.3 0.0058 1.3E-07 57.2 13.5 146 44-206 18-187 (280)
136 PRK07680 late competence prote 97.2 0.0028 6E-08 59.8 10.8 97 45-165 1-100 (273)
137 PLN02240 UDP-glucose 4-epimera 97.2 0.0064 1.4E-07 58.9 13.4 115 44-161 5-131 (352)
138 PRK05865 hypothetical protein; 97.2 0.0045 9.7E-08 67.2 13.3 104 45-164 1-105 (854)
139 PRK08267 short chain dehydroge 97.2 0.006 1.3E-07 56.4 12.6 117 45-164 2-138 (260)
140 PRK11150 rfaD ADP-L-glycero-D- 97.2 0.0028 6.1E-08 60.3 10.6 108 47-161 2-115 (308)
141 PRK07201 short chain dehydroge 97.2 0.0065 1.4E-07 64.1 14.3 108 45-154 1-118 (657)
142 PRK07102 short chain dehydroge 97.2 0.02 4.4E-07 52.2 15.8 116 45-163 2-136 (243)
143 TIGR01214 rmlD dTDP-4-dehydror 97.2 0.0021 4.6E-08 60.3 9.4 95 46-161 1-99 (287)
144 PRK08643 acetoin reductase; Va 97.2 0.02 4.3E-07 52.7 15.6 116 45-164 3-141 (256)
145 PRK07502 cyclohexadienyl dehyd 97.1 0.0033 7.1E-08 60.4 10.4 67 45-120 7-74 (307)
146 PRK12384 sorbitol-6-phosphate 97.1 0.018 4E-07 53.0 15.2 118 45-164 3-143 (259)
147 COG0300 DltE Short-chain dehyd 97.1 0.0091 2E-07 56.2 12.8 120 41-163 3-144 (265)
148 PRK08655 prephenate dehydrogen 97.1 0.0035 7.6E-08 63.3 10.7 66 45-120 1-66 (437)
149 PRK11880 pyrroline-5-carboxyla 97.1 0.0027 5.9E-08 59.5 9.4 96 44-165 2-98 (267)
150 KOG1430 C-3 sterol dehydrogena 97.1 0.0035 7.6E-08 61.4 10.3 109 43-153 3-118 (361)
151 PRK12829 short chain dehydroge 97.1 0.013 2.8E-07 54.0 13.8 36 43-80 10-45 (264)
152 PRK13394 3-hydroxybutyrate deh 97.1 0.0045 9.8E-08 57.0 10.7 115 44-162 7-144 (262)
153 PLN02688 pyrroline-5-carboxyla 97.1 0.0028 6.2E-08 59.3 9.4 66 45-120 1-69 (266)
154 PRK05717 oxidoreductase; Valid 97.1 0.0045 9.7E-08 57.1 10.6 145 45-206 11-176 (255)
155 PRK12320 hypothetical protein; 97.1 0.0021 4.6E-08 68.2 9.3 101 45-161 1-101 (699)
156 PF01118 Semialdhyde_dh: Semia 97.1 0.0013 2.9E-08 54.3 6.2 73 46-121 1-75 (121)
157 PF01370 Epimerase: NAD depend 97.1 0.0026 5.6E-08 57.5 8.7 168 47-220 1-174 (236)
158 PLN02686 cinnamoyl-CoA reducta 97.1 0.003 6.5E-08 62.2 9.8 118 42-162 51-180 (367)
159 PRK07067 sorbitol dehydrogenas 97.1 0.0077 1.7E-07 55.5 12.0 145 45-205 7-171 (257)
160 TIGR02354 thiF_fam2 thiamine b 97.1 0.0057 1.2E-07 55.2 10.8 33 45-79 22-54 (200)
161 PRK07231 fabG 3-ketoacyl-(acyl 97.1 0.021 4.6E-07 52.1 14.8 114 44-162 5-141 (251)
162 PRK07424 bifunctional sterol d 97.1 0.0064 1.4E-07 60.8 12.0 128 17-148 151-284 (406)
163 PRK08340 glucose-1-dehydrogena 97.1 0.012 2.6E-07 54.5 13.2 114 45-163 1-139 (259)
164 TIGR00872 gnd_rel 6-phosphoglu 97.1 0.0044 9.6E-08 59.3 10.3 95 45-164 1-96 (298)
165 TIGR02632 RhaD_aldol-ADH rhamn 97.0 0.0085 1.8E-07 63.9 13.3 118 43-162 413-553 (676)
166 PRK07326 short chain dehydroge 97.0 0.013 2.9E-07 53.1 12.9 114 45-163 7-141 (237)
167 PF10727 Rossmann-like: Rossma 97.0 0.00089 1.9E-08 56.1 4.7 102 43-170 9-115 (127)
168 PRK10538 malonic semialdehyde 97.0 0.0068 1.5E-07 55.7 11.1 112 45-163 1-135 (248)
169 PRK07523 gluconate 5-dehydroge 97.0 0.0095 2.1E-07 54.9 12.0 116 44-163 10-147 (255)
170 TIGR02197 heptose_epim ADP-L-g 97.0 0.0055 1.2E-07 58.1 10.6 109 47-161 1-113 (314)
171 PRK07634 pyrroline-5-carboxyla 97.0 0.0078 1.7E-07 55.5 11.2 70 43-120 3-74 (245)
172 PRK11559 garR tartronate semia 97.0 0.0037 8.1E-08 59.5 9.2 64 45-120 3-66 (296)
173 PLN02657 3,8-divinyl protochlo 97.0 0.0079 1.7E-07 59.8 11.8 113 43-161 59-181 (390)
174 TIGR01505 tartro_sem_red 2-hyd 97.0 0.0032 6.9E-08 59.9 8.7 63 46-120 1-63 (291)
175 cd01065 NAD_bind_Shikimate_DH 97.0 0.0042 9E-08 53.0 8.5 74 42-123 17-92 (155)
176 PRK06172 short chain dehydroge 97.0 0.017 3.6E-07 53.1 13.0 156 44-218 7-186 (253)
177 PRK12937 short chain dehydroge 96.9 0.016 3.4E-07 52.8 12.6 115 44-162 5-140 (245)
178 PRK07679 pyrroline-5-carboxyla 96.9 0.0084 1.8E-07 56.7 11.1 70 43-120 2-73 (279)
179 PRK08269 3-hydroxybutyryl-CoA 96.9 0.0056 1.2E-07 59.2 9.9 111 56-190 1-137 (314)
180 PRK06914 short chain dehydroge 96.9 0.045 9.7E-07 51.1 15.7 115 45-162 4-140 (280)
181 PRK07814 short chain dehydroge 96.9 0.032 7E-07 51.7 14.6 156 43-217 9-187 (263)
182 PRK07806 short chain dehydroge 96.9 0.0063 1.4E-07 55.7 9.7 115 44-162 6-135 (248)
183 PRK07069 short chain dehydroge 96.9 0.052 1.1E-06 49.5 15.8 115 46-163 1-139 (251)
184 PRK08278 short chain dehydroge 96.9 0.039 8.4E-07 51.7 15.2 159 44-218 6-193 (273)
185 PRK06482 short chain dehydroge 96.9 0.019 4E-07 53.6 13.0 113 45-162 3-135 (276)
186 PRK06924 short chain dehydroge 96.9 0.009 1.9E-07 54.8 10.6 34 45-80 2-35 (251)
187 PRK05875 short chain dehydroge 96.9 0.032 6.9E-07 52.0 14.5 159 44-218 7-188 (276)
188 PRK08265 short chain dehydroge 96.9 0.013 2.7E-07 54.5 11.7 153 44-217 6-178 (261)
189 PRK08945 putative oxoacyl-(acy 96.9 0.038 8.3E-07 50.6 14.6 120 41-163 9-153 (247)
190 COG1088 RfbB dTDP-D-glucose 4, 96.9 0.011 2.5E-07 56.0 10.9 165 45-209 1-174 (340)
191 TIGR01179 galE UDP-glucose-4-e 96.9 0.0085 1.8E-07 56.8 10.5 110 46-161 1-120 (328)
192 PRK06545 prephenate dehydrogen 96.9 0.0073 1.6E-07 59.4 10.2 68 45-120 1-68 (359)
193 PRK09135 pteridine reductase; 96.9 0.029 6.2E-07 51.0 13.6 147 45-206 7-175 (249)
194 PRK12480 D-lactate dehydrogena 96.9 0.0095 2.1E-07 58.0 10.9 91 43-162 145-235 (330)
195 PRK12828 short chain dehydroge 96.8 0.012 2.6E-07 53.2 10.9 115 44-162 7-141 (239)
196 TIGR03206 benzo_BadH 2-hydroxy 96.8 0.02 4.4E-07 52.2 12.5 115 44-162 3-139 (250)
197 COG1893 ApbA Ketopantoate redu 96.8 0.0061 1.3E-07 58.7 9.3 120 45-192 1-126 (307)
198 PRK12429 3-hydroxybutyrate deh 96.8 0.01 2.2E-07 54.4 10.5 114 44-162 4-140 (258)
199 PRK11199 tyrA bifunctional cho 96.8 0.0096 2.1E-07 59.0 10.9 53 44-120 98-150 (374)
200 PRK07666 fabG 3-ketoacyl-(acyl 96.8 0.032 6.9E-07 50.8 13.6 117 44-164 7-145 (239)
201 PRK12936 3-ketoacyl-(acyl-carr 96.8 0.009 2E-07 54.3 9.9 114 44-164 6-141 (245)
202 PRK05876 short chain dehydroge 96.8 0.026 5.7E-07 53.0 13.3 115 44-162 6-143 (275)
203 PRK12827 short chain dehydroge 96.8 0.042 9E-07 50.0 14.3 118 43-164 5-149 (249)
204 PRK07832 short chain dehydroge 96.8 0.096 2.1E-06 48.8 17.1 118 45-164 1-140 (272)
205 PRK07576 short chain dehydroge 96.8 0.019 4.1E-07 53.5 12.0 117 44-164 9-146 (264)
206 PF01488 Shikimate_DH: Shikima 96.8 0.0046 9.9E-08 52.2 7.1 76 41-123 9-86 (135)
207 PF02558 ApbA: Ketopantoate re 96.8 0.003 6.6E-08 53.7 6.0 118 47-191 1-125 (151)
208 PRK06180 short chain dehydroge 96.8 0.03 6.4E-07 52.5 13.3 114 44-162 4-137 (277)
209 PRK07063 short chain dehydroge 96.8 0.053 1.2E-06 50.0 14.8 157 44-217 7-186 (260)
210 PRK12491 pyrroline-5-carboxyla 96.8 0.0085 1.8E-07 56.7 9.5 67 45-120 3-71 (272)
211 PRK05866 short chain dehydroge 96.8 0.026 5.6E-07 53.7 12.8 99 17-123 17-128 (293)
212 COG4221 Short-chain alcohol de 96.7 0.06 1.3E-06 49.8 14.3 156 45-217 7-181 (246)
213 PRK06138 short chain dehydroge 96.7 0.055 1.2E-06 49.4 14.4 113 44-162 5-140 (252)
214 PRK12490 6-phosphogluconate de 96.7 0.0079 1.7E-07 57.6 8.9 64 45-120 1-67 (299)
215 PRK08507 prephenate dehydrogen 96.7 0.013 2.7E-07 55.4 10.2 66 45-120 1-66 (275)
216 TIGR01830 3oxo_ACP_reduc 3-oxo 96.7 0.025 5.4E-07 51.1 11.9 114 47-164 1-137 (239)
217 PRK15461 NADH-dependent gamma- 96.7 0.009 2E-07 57.1 9.3 64 45-120 2-65 (296)
218 PRK12939 short chain dehydroge 96.7 0.047 1E-06 49.7 13.7 115 44-162 7-143 (250)
219 PRK06124 gluconate 5-dehydroge 96.7 0.017 3.8E-07 53.1 10.9 118 43-164 10-149 (256)
220 PTZ00142 6-phosphogluconate de 96.7 0.0096 2.1E-07 60.7 9.8 98 45-165 2-105 (470)
221 PRK06701 short chain dehydroge 96.7 0.03 6.4E-07 53.1 12.6 117 43-163 45-183 (290)
222 COG0677 WecC UDP-N-acetyl-D-ma 96.7 0.019 4.2E-07 56.4 11.3 112 45-170 10-138 (436)
223 COG2084 MmsB 3-hydroxyisobutyr 96.7 0.011 2.4E-07 56.2 9.5 65 45-120 1-65 (286)
224 PRK06928 pyrroline-5-carboxyla 96.7 0.026 5.6E-07 53.5 12.1 99 45-166 2-103 (277)
225 TIGR01832 kduD 2-deoxy-D-gluco 96.7 0.1 2.3E-06 47.5 15.8 116 43-162 4-140 (248)
226 PRK12745 3-ketoacyl-(acyl-carr 96.7 0.099 2.1E-06 47.9 15.7 34 45-80 3-36 (256)
227 PLN00141 Tic62-NAD(P)-related 96.6 0.011 2.4E-07 54.6 9.3 110 43-161 16-131 (251)
228 PRK08589 short chain dehydroge 96.6 0.047 1E-06 51.0 13.6 115 44-164 6-143 (272)
229 PRK07024 short chain dehydroge 96.6 0.032 7E-07 51.5 12.4 35 44-80 2-36 (257)
230 PRK07890 short chain dehydroge 96.6 0.066 1.4E-06 49.1 14.4 117 42-162 3-141 (258)
231 COG2910 Putative NADH-flavin r 96.6 0.018 3.8E-07 51.1 9.7 104 45-161 1-104 (211)
232 PRK12481 2-deoxy-D-gluconate 3 96.6 0.038 8.3E-07 51.0 12.7 156 44-217 8-184 (251)
233 PRK08213 gluconate 5-dehydroge 96.6 0.047 1E-06 50.3 13.3 116 44-163 12-150 (259)
234 COG0569 TrkA K+ transport syst 96.6 0.0033 7.2E-08 57.8 5.4 70 45-121 1-75 (225)
235 PRK07774 short chain dehydroge 96.6 0.05 1.1E-06 49.7 13.4 115 44-162 6-145 (250)
236 PRK05708 2-dehydropantoate 2-r 96.6 0.031 6.7E-07 53.7 12.4 117 44-189 2-125 (305)
237 PRK06181 short chain dehydroge 96.6 0.034 7.5E-07 51.3 12.4 116 45-164 2-139 (263)
238 PRK05855 short chain dehydroge 96.6 0.06 1.3E-06 55.4 15.3 121 40-164 311-454 (582)
239 PLN02256 arogenate dehydrogena 96.6 0.023 4.9E-07 54.7 11.3 65 43-120 35-100 (304)
240 PRK06500 short chain dehydroge 96.6 0.027 5.8E-07 51.4 11.4 112 44-162 6-137 (249)
241 PRK12826 3-ketoacyl-(acyl-carr 96.6 0.027 5.8E-07 51.3 11.4 114 44-162 6-142 (251)
242 PRK06935 2-deoxy-D-gluconate 3 96.6 0.038 8.2E-07 51.0 12.4 116 44-163 15-151 (258)
243 PRK06179 short chain dehydroge 96.6 0.052 1.1E-06 50.4 13.4 112 45-163 5-133 (270)
244 PRK07856 short chain dehydroge 96.6 0.035 7.6E-07 51.0 12.1 141 44-206 6-167 (252)
245 PTZ00431 pyrroline carboxylate 96.6 0.013 2.9E-07 54.9 9.3 61 44-120 3-65 (260)
246 PRK09599 6-phosphogluconate de 96.6 0.02 4.4E-07 54.8 10.8 64 45-120 1-67 (301)
247 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.018 4E-07 55.5 10.4 100 42-167 176-279 (311)
248 PRK06841 short chain dehydroge 96.6 0.022 4.7E-07 52.3 10.5 113 44-162 15-148 (255)
249 PLN02996 fatty acyl-CoA reduct 96.5 0.043 9.3E-07 56.3 13.4 111 40-151 7-150 (491)
250 PRK06128 oxidoreductase; Provi 96.5 0.07 1.5E-06 50.7 14.1 116 44-163 55-193 (300)
251 cd05312 NAD_bind_1_malic_enz N 96.5 0.026 5.7E-07 53.4 10.7 101 44-165 25-144 (279)
252 TIGR01746 Thioester-redct thio 96.5 0.036 7.8E-07 53.3 12.1 114 46-161 1-135 (367)
253 PRK07985 oxidoreductase; Provi 96.5 0.18 4E-06 47.8 16.7 118 42-163 47-187 (294)
254 PRK09242 tropinone reductase; 96.5 0.12 2.6E-06 47.6 15.0 118 44-163 9-148 (257)
255 PRK08251 short chain dehydroge 96.5 0.11 2.3E-06 47.5 14.5 115 45-162 3-140 (248)
256 PRK12746 short chain dehydroge 96.5 0.12 2.5E-06 47.4 14.8 115 44-162 6-147 (254)
257 PF03949 Malic_M: Malic enzyme 96.5 0.011 2.3E-07 55.3 7.8 107 43-169 24-151 (255)
258 PF04321 RmlD_sub_bind: RmlD s 96.5 0.0033 7.1E-08 59.8 4.5 98 45-161 1-100 (286)
259 TIGR02356 adenyl_thiF thiazole 96.5 0.02 4.3E-07 51.7 9.4 34 45-80 22-55 (202)
260 PRK09186 flagellin modificatio 96.4 0.04 8.6E-07 50.5 11.5 36 43-80 3-38 (256)
261 PRK08642 fabG 3-ketoacyl-(acyl 96.4 0.036 7.9E-07 50.6 11.2 153 45-215 6-185 (253)
262 PRK12825 fabG 3-ketoacyl-(acyl 96.4 0.039 8.5E-07 49.9 11.3 113 44-161 6-142 (249)
263 PRK06182 short chain dehydroge 96.4 0.044 9.6E-07 51.1 11.8 113 44-162 3-133 (273)
264 PRK05690 molybdopterin biosynt 96.4 0.047 1E-06 50.9 11.8 33 46-80 34-66 (245)
265 PRK12935 acetoacetyl-CoA reduc 96.4 0.11 2.5E-06 47.3 14.4 115 44-162 6-143 (247)
266 PRK08818 prephenate dehydrogen 96.4 0.026 5.7E-07 55.7 10.6 56 44-120 4-59 (370)
267 PRK06101 short chain dehydroge 96.4 0.057 1.2E-06 49.3 12.3 145 45-205 2-159 (240)
268 KOG2666 UDP-glucose/GDP-mannos 96.4 0.016 3.4E-07 55.4 8.5 77 44-125 1-91 (481)
269 PRK05653 fabG 3-ketoacyl-(acyl 96.4 0.028 6E-07 50.9 10.1 114 44-161 5-140 (246)
270 PRK06523 short chain dehydroge 96.4 0.01 2.2E-07 54.8 7.3 35 44-80 9-43 (260)
271 cd05311 NAD_bind_2_malic_enz N 96.4 0.049 1.1E-06 50.1 11.7 101 42-166 23-133 (226)
272 PRK09009 C factor cell-cell si 96.4 0.032 6.9E-07 50.6 10.4 71 45-123 1-78 (235)
273 PRK05884 short chain dehydroge 96.4 0.019 4.1E-07 52.2 8.9 34 45-80 1-34 (223)
274 PRK12742 oxidoreductase; Provi 96.4 0.049 1.1E-06 49.3 11.6 156 44-217 6-174 (237)
275 PRK08339 short chain dehydroge 96.4 0.28 6.1E-06 45.6 16.9 116 45-164 9-146 (263)
276 PRK05854 short chain dehydroge 96.4 0.037 8.1E-07 53.1 11.2 170 44-217 14-205 (313)
277 PLN02780 ketoreductase/ oxidor 96.3 0.06 1.3E-06 52.0 12.6 116 45-162 54-193 (320)
278 TIGR03325 BphB_TodD cis-2,3-di 96.3 0.03 6.5E-07 51.9 10.1 35 44-80 5-39 (262)
279 PRK05479 ketol-acid reductoiso 96.3 0.027 5.7E-07 54.8 10.0 66 43-120 16-81 (330)
280 PRK07825 short chain dehydroge 96.3 0.052 1.1E-06 50.5 11.8 115 44-164 5-139 (273)
281 PRK06949 short chain dehydroge 96.3 0.056 1.2E-06 49.6 11.9 36 43-80 8-43 (258)
282 PRK13243 glyoxylate reductase; 96.3 0.022 4.8E-07 55.5 9.5 98 43-167 149-248 (333)
283 PLN02260 probable rhamnose bio 96.3 0.038 8.3E-07 58.7 12.0 97 40-160 376-479 (668)
284 PRK08085 gluconate 5-dehydroge 96.3 0.048 1E-06 50.1 11.3 114 45-162 10-145 (254)
285 TIGR01963 PHB_DH 3-hydroxybuty 96.3 0.071 1.5E-06 48.7 12.4 113 45-162 2-137 (255)
286 PRK08226 short chain dehydroge 96.3 0.099 2.1E-06 48.2 13.4 115 44-162 6-141 (263)
287 PRK05650 short chain dehydroge 96.3 0.066 1.4E-06 49.8 12.3 114 45-163 1-137 (270)
288 PF00899 ThiF: ThiF family; I 96.3 0.013 2.8E-07 49.1 6.8 34 45-80 3-36 (135)
289 COG0287 TyrA Prephenate dehydr 96.3 0.019 4.2E-07 54.5 8.6 67 44-120 3-72 (279)
290 PRK14194 bifunctional 5,10-met 96.3 0.024 5.1E-07 54.3 9.2 77 43-164 158-235 (301)
291 PRK09072 short chain dehydroge 96.3 0.12 2.5E-06 47.8 13.9 115 44-163 5-140 (263)
292 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.014 3.1E-07 52.0 7.3 77 43-122 27-107 (194)
293 PRK08628 short chain dehydroge 96.3 0.12 2.7E-06 47.4 13.8 114 44-161 7-139 (258)
294 TIGR02415 23BDH acetoin reduct 96.3 0.14 3.1E-06 46.8 14.1 112 46-161 2-136 (254)
295 PRK05557 fabG 3-ketoacyl-(acyl 96.3 0.1 2.2E-06 47.2 13.1 116 44-163 5-143 (248)
296 PRK07097 gluconate 5-dehydroge 96.3 0.086 1.9E-06 48.9 12.8 154 45-217 11-187 (265)
297 cd01487 E1_ThiF_like E1_ThiF_l 96.3 0.048 1E-06 48.1 10.5 33 46-80 1-33 (174)
298 PRK12747 short chain dehydroge 96.2 0.24 5.3E-06 45.3 15.6 156 44-217 4-186 (252)
299 PRK07574 formate dehydrogenase 96.2 0.036 7.8E-07 55.1 10.6 101 42-167 190-292 (385)
300 KOG2305 3-hydroxyacyl-CoA dehy 96.2 0.0062 1.3E-07 55.6 4.6 104 45-167 4-124 (313)
301 PRK06476 pyrroline-5-carboxyla 96.2 0.023 5E-07 53.0 8.8 68 45-120 1-69 (258)
302 PRK07453 protochlorophyllide o 96.2 0.048 1E-06 52.3 11.2 114 44-161 6-144 (322)
303 PRK12367 short chain dehydroge 96.2 0.064 1.4E-06 49.7 11.6 101 45-149 15-119 (245)
304 PRK15469 ghrA bifunctional gly 96.2 0.052 1.1E-06 52.4 11.3 97 43-166 135-233 (312)
305 PRK08277 D-mannonate oxidoredu 96.2 0.25 5.4E-06 46.0 15.7 75 44-122 10-97 (278)
306 PRK07478 short chain dehydroge 96.2 0.15 3.2E-06 46.8 14.0 156 44-217 6-185 (254)
307 PRK09291 short chain dehydroge 96.2 0.074 1.6E-06 48.8 11.9 75 45-123 3-84 (257)
308 PRK15059 tartronate semialdehy 96.2 0.019 4E-07 54.9 8.1 63 45-120 1-63 (292)
309 COG0345 ProC Pyrroline-5-carbo 96.2 0.031 6.7E-07 52.7 9.3 97 44-165 1-99 (266)
310 PRK08264 short chain dehydroge 96.2 0.073 1.6E-06 48.3 11.7 142 44-205 6-164 (238)
311 PRK06113 7-alpha-hydroxysteroi 96.2 0.24 5.2E-06 45.5 15.3 115 44-162 11-146 (255)
312 PRK07831 short chain dehydroge 96.2 0.5 1.1E-05 43.6 17.5 78 44-123 17-108 (262)
313 PLN02712 arogenate dehydrogena 96.2 0.029 6.2E-07 59.7 10.1 68 40-120 48-116 (667)
314 PRK07074 short chain dehydroge 96.2 0.067 1.5E-06 49.2 11.4 112 45-162 3-136 (257)
315 PRK08703 short chain dehydroge 96.2 0.43 9.4E-06 43.3 16.7 36 43-80 5-40 (239)
316 PRK07035 short chain dehydroge 96.1 0.075 1.6E-06 48.7 11.7 114 45-162 9-145 (252)
317 PRK08936 glucose-1-dehydrogena 96.1 0.46 1E-05 43.8 17.1 157 44-218 7-187 (261)
318 PRK08063 enoyl-(acyl carrier p 96.1 0.21 4.5E-06 45.5 14.6 114 45-162 5-141 (250)
319 PRK12744 short chain dehydroge 96.1 0.25 5.5E-06 45.4 15.2 154 45-217 9-187 (257)
320 cd01483 E1_enzyme_family Super 96.1 0.05 1.1E-06 46.0 9.7 33 46-80 1-33 (143)
321 PRK06057 short chain dehydroge 96.1 0.037 8.1E-07 51.0 9.6 36 43-80 6-41 (255)
322 COG1090 Predicted nucleoside-d 96.1 0.05 1.1E-06 51.2 10.2 98 47-155 1-103 (297)
323 PRK06398 aldose dehydrogenase; 96.1 0.03 6.6E-07 51.9 9.0 151 44-218 6-172 (258)
324 PRK06198 short chain dehydroge 96.1 0.27 5.8E-06 45.2 15.2 115 44-162 6-144 (260)
325 PRK12823 benD 1,6-dihydroxycyc 96.1 0.13 2.8E-06 47.4 13.0 154 43-217 7-183 (260)
326 PRK06197 short chain dehydroge 96.1 0.1 2.2E-06 49.6 12.7 116 44-162 16-152 (306)
327 TIGR02853 spore_dpaA dipicolin 96.1 0.035 7.5E-07 53.0 9.3 98 42-167 149-247 (287)
328 PRK08644 thiamine biosynthesis 96.1 0.086 1.9E-06 48.0 11.5 34 45-80 29-62 (212)
329 PRK06200 2,3-dihydroxy-2,3-dih 96.1 0.044 9.5E-07 50.7 9.7 36 43-80 5-40 (263)
330 PRK07060 short chain dehydroge 96.1 0.032 6.8E-07 50.8 8.6 115 44-162 9-137 (245)
331 PRK06171 sorbitol-6-phosphate 96.1 0.027 5.8E-07 52.2 8.3 35 44-80 9-43 (266)
332 PRK08219 short chain dehydroge 96.1 0.058 1.3E-06 48.3 10.3 114 44-162 3-129 (227)
333 PRK08605 D-lactate dehydrogena 96.0 0.029 6.3E-07 54.6 8.7 64 43-120 145-208 (332)
334 PRK08993 2-deoxy-D-gluconate 3 96.0 0.2 4.3E-06 46.1 14.0 114 45-162 11-145 (253)
335 PRK07109 short chain dehydroge 96.0 0.14 3.1E-06 49.6 13.5 114 44-162 8-144 (334)
336 COG1712 Predicted dinucleotide 96.0 0.053 1.2E-06 49.5 9.6 96 45-165 1-97 (255)
337 PRK08306 dipicolinate synthase 96.0 0.051 1.1E-06 52.1 10.2 80 30-120 138-218 (296)
338 PRK08291 ectoine utilization p 96.0 0.035 7.6E-07 54.0 9.2 73 44-121 132-206 (330)
339 PRK06196 oxidoreductase; Provi 96.0 0.1 2.2E-06 49.9 12.3 113 44-162 26-156 (315)
340 PRK14806 bifunctional cyclohex 96.0 0.052 1.1E-06 58.4 11.3 92 45-161 4-97 (735)
341 PLN03139 formate dehydrogenase 96.0 0.049 1.1E-06 54.1 10.3 101 42-167 197-299 (386)
342 cd00762 NAD_bind_malic_enz NAD 96.0 0.0089 1.9E-07 55.8 4.7 121 44-189 25-166 (254)
343 PRK06139 short chain dehydroge 96.0 0.2 4.2E-06 48.7 14.3 114 44-162 7-143 (330)
344 PRK08416 7-alpha-hydroxysteroi 96.0 0.49 1.1E-05 43.7 16.6 155 43-215 7-191 (260)
345 TIGR00873 gnd 6-phosphoglucona 96.0 0.025 5.5E-07 57.6 8.4 102 46-167 1-106 (467)
346 PRK08263 short chain dehydroge 96.0 0.045 9.7E-07 51.2 9.5 34 45-80 4-37 (275)
347 PF05368 NmrA: NmrA-like famil 96.0 0.018 3.8E-07 52.6 6.6 92 47-152 1-94 (233)
348 TIGR02685 pter_reduc_Leis pter 96.0 0.33 7.2E-06 45.0 15.3 32 46-79 3-34 (267)
349 PRK05867 short chain dehydroge 96.0 0.12 2.7E-06 47.4 12.3 114 44-161 9-145 (253)
350 PRK05565 fabG 3-ketoacyl-(acyl 96.0 0.09 2E-06 47.7 11.3 114 45-162 6-142 (247)
351 PLN02725 GDP-4-keto-6-deoxyman 96.0 0.023 4.9E-07 53.7 7.4 94 48-160 1-99 (306)
352 TIGR02371 ala_DH_arch alanine 96.0 0.034 7.4E-07 54.0 8.7 71 44-120 128-200 (325)
353 PRK08220 2,3-dihydroxybenzoate 96.0 0.11 2.4E-06 47.4 11.8 108 44-162 8-135 (252)
354 PRK12743 oxidoreductase; Provi 95.9 0.43 9.4E-06 43.9 15.8 115 45-163 3-141 (256)
355 PF01113 DapB_N: Dihydrodipico 95.9 0.036 7.8E-07 46.0 7.6 72 45-120 1-75 (124)
356 PRK05597 molybdopterin biosynt 95.9 0.054 1.2E-06 53.3 10.1 60 8-80 3-62 (355)
357 PRK06550 fabG 3-ketoacyl-(acyl 95.9 0.12 2.6E-06 46.7 11.8 108 44-162 5-127 (235)
358 COG1091 RfbD dTDP-4-dehydrorha 95.9 0.04 8.7E-07 52.3 8.8 146 45-222 1-156 (281)
359 PRK07454 short chain dehydroge 95.9 0.1 2.2E-06 47.4 11.4 115 44-163 6-143 (241)
360 PRK12475 thiamine/molybdopteri 95.9 0.035 7.6E-07 54.2 8.7 74 45-120 25-124 (338)
361 PRK06077 fabG 3-ketoacyl-(acyl 95.9 0.2 4.3E-06 45.7 13.3 115 44-162 6-141 (252)
362 PRK05600 thiamine biosynthesis 95.9 0.066 1.4E-06 53.0 10.7 34 45-80 42-75 (370)
363 PF02826 2-Hacid_dh_C: D-isome 95.9 0.052 1.1E-06 47.9 8.9 94 42-162 34-128 (178)
364 PRK08618 ornithine cyclodeamin 95.9 0.04 8.7E-07 53.4 8.8 73 44-121 127-201 (325)
365 PRK08177 short chain dehydroge 95.9 0.13 2.7E-06 46.5 11.6 34 45-80 2-35 (225)
366 PRK07023 short chain dehydroge 95.9 0.028 6E-07 51.4 7.3 35 44-80 1-35 (243)
367 PRK06947 glucose-1-dehydrogena 95.9 0.29 6.3E-06 44.6 14.1 32 45-78 3-34 (248)
368 PRK05693 short chain dehydroge 95.8 0.16 3.4E-06 47.3 12.6 34 45-80 2-35 (274)
369 PRK13304 L-aspartate dehydroge 95.8 0.061 1.3E-06 50.6 9.6 69 44-121 1-70 (265)
370 PF02423 OCD_Mu_crystall: Orni 95.8 0.03 6.5E-07 54.1 7.5 70 45-120 129-200 (313)
371 PRK05993 short chain dehydroge 95.8 0.086 1.9E-06 49.4 10.5 112 45-162 5-135 (277)
372 PRK05599 hypothetical protein; 95.8 0.63 1.4E-05 42.7 16.1 153 45-215 1-176 (246)
373 PRK07878 molybdopterin biosynt 95.8 0.095 2E-06 52.3 11.2 33 46-80 44-76 (392)
374 TIGR00465 ilvC ketol-acid redu 95.8 0.066 1.4E-06 51.8 9.7 65 44-120 3-67 (314)
375 TIGR01724 hmd_rel H2-forming N 95.8 0.096 2.1E-06 50.5 10.6 66 45-120 1-89 (341)
376 PRK12824 acetoacetyl-CoA reduc 95.8 0.23 4.9E-06 45.0 12.9 115 45-163 3-140 (245)
377 TIGR01831 fabG_rel 3-oxoacyl-( 95.8 0.13 2.8E-06 46.7 11.2 114 47-164 1-138 (239)
378 PLN02928 oxidoreductase family 95.7 0.046 9.9E-07 53.6 8.7 103 43-161 158-262 (347)
379 PRK07904 short chain dehydroge 95.7 0.18 3.9E-06 46.7 12.4 116 43-162 7-146 (253)
380 PRK09134 short chain dehydroge 95.7 0.12 2.7E-06 47.5 11.2 113 45-161 10-145 (258)
381 PRK06718 precorrin-2 dehydroge 95.7 0.14 3.1E-06 46.2 11.2 72 44-123 10-81 (202)
382 PRK07792 fabG 3-ketoacyl-(acyl 95.7 0.31 6.7E-06 46.5 14.2 100 44-147 12-130 (306)
383 PLN00016 RNA-binding protein; 95.7 0.07 1.5E-06 52.6 9.9 36 43-80 51-90 (378)
384 PRK06407 ornithine cyclodeamin 95.7 0.047 1E-06 52.5 8.4 73 44-121 117-191 (301)
385 PRK07340 ornithine cyclodeamin 95.7 0.053 1.1E-06 52.1 8.7 71 44-121 125-197 (304)
386 PF03435 Saccharop_dh: Sacchar 95.7 0.0084 1.8E-07 59.3 3.2 71 47-122 1-77 (386)
387 TIGR00518 alaDH alanine dehydr 95.6 0.047 1E-06 54.0 8.4 82 36-123 159-241 (370)
388 PRK07984 enoyl-(acyl carrier p 95.6 0.24 5.3E-06 46.2 12.9 156 44-217 6-187 (262)
389 PRK07677 short chain dehydroge 95.6 0.43 9.4E-06 43.7 14.4 114 45-162 2-138 (252)
390 PRK07201 short chain dehydroge 95.6 0.21 4.5E-06 52.7 13.8 116 42-162 369-509 (657)
391 PLN02712 arogenate dehydrogena 95.6 0.072 1.6E-06 56.7 10.2 66 42-120 367-433 (667)
392 PRK08223 hypothetical protein; 95.6 0.064 1.4E-06 51.1 8.8 33 46-80 29-61 (287)
393 PRK05786 fabG 3-ketoacyl-(acyl 95.6 0.1 2.2E-06 47.3 10.0 34 45-80 6-39 (238)
394 PRK07577 short chain dehydroge 95.6 0.15 3.2E-06 46.0 11.0 35 44-80 3-37 (234)
395 PRK08762 molybdopterin biosynt 95.6 0.078 1.7E-06 52.5 9.8 32 46-79 137-168 (376)
396 PRK05872 short chain dehydroge 95.6 0.29 6.3E-06 46.4 13.4 114 44-162 9-143 (296)
397 PRK13302 putative L-aspartate 95.6 0.04 8.6E-07 52.1 7.4 71 42-121 4-76 (271)
398 TIGR02355 moeB molybdopterin s 95.6 0.08 1.7E-06 49.2 9.2 33 46-80 26-58 (240)
399 PRK07062 short chain dehydroge 95.6 0.4 8.7E-06 44.2 14.0 117 44-163 8-147 (265)
400 PRK07688 thiamine/molybdopteri 95.6 0.1 2.2E-06 51.1 10.3 33 46-80 26-58 (339)
401 TIGR03649 ergot_EASG ergot alk 95.6 0.056 1.2E-06 50.8 8.3 33 46-80 1-33 (285)
402 PRK00048 dihydrodipicolinate r 95.6 0.57 1.2E-05 43.9 15.0 68 44-120 1-68 (257)
403 PRK06141 ornithine cyclodeamin 95.5 0.067 1.5E-06 51.6 8.9 72 44-121 125-198 (314)
404 PRK08324 short chain dehydroge 95.5 0.11 2.5E-06 55.4 11.5 115 43-162 421-558 (681)
405 PRK06114 short chain dehydroge 95.5 0.17 3.7E-06 46.5 11.4 115 45-163 9-146 (254)
406 TIGR02992 ectoine_eutC ectoine 95.5 0.071 1.5E-06 51.8 9.1 73 44-121 129-203 (326)
407 PRK06123 short chain dehydroge 95.5 0.59 1.3E-05 42.4 14.9 115 46-164 4-145 (248)
408 PRK07775 short chain dehydroge 95.5 0.45 9.6E-06 44.4 14.3 34 45-80 11-44 (274)
409 KOG1205 Predicted dehydrogenas 95.5 0.55 1.2E-05 44.6 14.7 121 44-168 12-156 (282)
410 PLN02350 phosphogluconate dehy 95.5 0.055 1.2E-06 55.5 8.5 70 43-120 5-80 (493)
411 PRK08217 fabG 3-ketoacyl-(acyl 95.5 0.13 2.8E-06 46.8 10.2 35 44-80 5-39 (253)
412 KOG1371 UDP-glucose 4-epimeras 95.5 0.17 3.8E-06 48.7 11.1 105 44-152 2-119 (343)
413 cd01485 E1-1_like Ubiquitin ac 95.4 0.13 2.8E-06 46.3 9.8 34 45-80 20-53 (198)
414 PRK07411 hypothetical protein; 95.4 0.089 1.9E-06 52.4 9.5 57 11-80 16-72 (390)
415 PRK03659 glutathione-regulated 95.4 0.093 2E-06 55.2 10.1 138 44-213 400-542 (601)
416 cd00757 ThiF_MoeB_HesA_family 95.3 0.09 2E-06 48.3 8.7 33 46-80 23-55 (228)
417 PRK06463 fabG 3-ketoacyl-(acyl 95.3 0.29 6.4E-06 44.9 12.2 114 44-162 7-138 (255)
418 cd01080 NAD_bind_m-THF_DH_Cycl 95.3 0.057 1.2E-06 47.4 6.9 57 41-123 41-98 (168)
419 PRK07578 short chain dehydroge 95.3 0.15 3.2E-06 45.1 9.7 101 45-161 1-111 (199)
420 PRK12938 acetyacetyl-CoA reduc 95.3 0.46 9.9E-06 43.2 13.1 114 45-162 4-140 (246)
421 TIGR01035 hemA glutamyl-tRNA r 95.2 0.064 1.4E-06 53.9 7.9 103 42-167 178-283 (417)
422 PRK07589 ornithine cyclodeamin 95.2 0.088 1.9E-06 51.6 8.6 71 44-120 129-201 (346)
423 PRK06940 short chain dehydroge 95.2 0.21 4.6E-06 46.8 11.0 112 46-164 4-128 (275)
424 PRK06484 short chain dehydroge 95.2 0.12 2.6E-06 53.0 10.0 156 44-217 269-442 (520)
425 TIGR01745 asd_gamma aspartate- 95.2 0.099 2.1E-06 51.5 8.9 71 45-121 1-73 (366)
426 PLN02968 Probable N-acetyl-gam 95.2 0.048 1E-06 54.1 6.8 75 43-121 37-113 (381)
427 PRK06125 short chain dehydroge 95.2 0.98 2.1E-05 41.5 15.3 115 44-162 7-140 (259)
428 TIGR01470 cysG_Nterm siroheme 95.2 0.24 5.3E-06 44.8 10.8 71 44-122 9-79 (205)
429 TIGR01829 AcAcCoA_reduct aceto 95.1 0.61 1.3E-05 42.1 13.5 113 46-163 2-138 (242)
430 TIGR01692 HIBADH 3-hydroxyisob 95.1 0.072 1.5E-06 50.6 7.6 60 49-120 1-60 (288)
431 PRK06484 short chain dehydroge 95.1 0.21 4.5E-06 51.2 11.4 115 45-162 6-141 (520)
432 PRK06823 ornithine cyclodeamin 95.1 0.13 2.9E-06 49.7 9.3 71 44-120 128-200 (315)
433 PRK06603 enoyl-(acyl carrier p 95.1 1.7 3.6E-05 40.3 16.5 158 44-217 8-188 (260)
434 PTZ00075 Adenosylhomocysteinas 95.1 0.16 3.5E-06 51.6 10.1 91 42-163 252-343 (476)
435 PRK06953 short chain dehydroge 95.1 0.13 2.7E-06 46.4 8.7 114 45-163 2-131 (222)
436 PRK09496 trkA potassium transp 95.1 0.1 2.2E-06 52.5 8.9 72 45-121 1-74 (453)
437 cd00401 AdoHcyase S-adenosyl-L 95.0 0.25 5.5E-06 49.5 11.4 90 42-163 200-291 (413)
438 COG1064 AdhP Zn-dependent alco 95.0 0.8 1.7E-05 44.7 14.4 142 15-190 132-285 (339)
439 PRK06079 enoyl-(acyl carrier p 95.0 0.25 5.3E-06 45.6 10.7 35 44-80 7-43 (252)
440 PRK08261 fabG 3-ketoacyl-(acyl 95.0 0.31 6.8E-06 49.1 12.3 117 44-162 210-343 (450)
441 PF02882 THF_DHG_CYH_C: Tetrah 95.0 0.12 2.6E-06 45.1 7.9 57 42-123 34-90 (160)
442 PRK05476 S-adenosyl-L-homocyst 95.0 0.29 6.2E-06 49.3 11.7 93 43-165 211-303 (425)
443 PRK14106 murD UDP-N-acetylmura 95.0 0.15 3.3E-06 51.4 9.9 123 44-177 5-132 (450)
444 PRK09424 pntA NAD(P) transhydr 95.0 0.33 7.1E-06 50.0 12.3 150 36-205 157-327 (509)
445 cd01492 Aos1_SUMO Ubiquitin ac 94.9 0.24 5.2E-06 44.6 10.0 33 46-80 23-55 (197)
446 PLN02503 fatty acyl-CoA reduct 94.9 0.31 6.6E-06 51.3 12.1 110 42-152 117-258 (605)
447 PRK06598 aspartate-semialdehyd 94.9 0.18 3.9E-06 49.8 9.9 71 45-121 2-74 (369)
448 PRK06483 dihydromonapterin red 94.9 0.6 1.3E-05 42.2 12.8 34 45-80 3-36 (236)
449 TIGR01850 argC N-acetyl-gamma- 94.9 0.074 1.6E-06 52.1 7.1 74 45-121 1-77 (346)
450 PRK14874 aspartate-semialdehyd 94.9 0.081 1.8E-06 51.6 7.3 71 44-121 1-72 (334)
451 PRK06505 enoyl-(acyl carrier p 94.9 1.5 3.2E-05 41.0 15.7 156 45-217 8-187 (271)
452 PRK00045 hemA glutamyl-tRNA re 94.9 0.14 3E-06 51.6 9.1 106 42-167 180-286 (423)
453 COG0136 Asd Aspartate-semialde 94.9 0.14 3E-06 49.6 8.7 73 44-121 1-75 (334)
454 TIGR01327 PGDH D-3-phosphoglyc 94.8 0.12 2.6E-06 53.5 8.7 65 43-120 137-201 (525)
455 PLN02494 adenosylhomocysteinas 94.8 0.26 5.7E-06 50.0 10.7 94 42-166 252-346 (477)
456 PRK13529 malate dehydrogenase; 94.7 0.38 8.3E-06 49.8 11.9 105 44-165 295-421 (563)
457 TIGR01500 sepiapter_red sepiap 94.7 0.57 1.2E-05 43.1 12.3 42 46-89 2-49 (256)
458 PRK06199 ornithine cyclodeamin 94.7 0.15 3.2E-06 50.7 8.7 73 44-120 155-231 (379)
459 PLN02383 aspartate semialdehyd 94.7 0.074 1.6E-06 52.1 6.5 71 44-121 7-78 (344)
460 KOG2711 Glycerol-3-phosphate d 94.7 0.42 9E-06 46.3 11.3 122 42-184 19-167 (372)
461 PRK06046 alanine dehydrogenase 94.7 0.14 3E-06 49.8 8.3 71 44-120 129-201 (326)
462 cd01079 NAD_bind_m-THF_DH NAD 94.7 0.11 2.3E-06 46.7 6.8 117 42-189 60-178 (197)
463 PF07991 IlvN: Acetohydroxy ac 94.6 0.14 3.1E-06 44.5 7.4 66 43-120 3-68 (165)
464 COG2423 Predicted ornithine cy 94.6 0.1 2.3E-06 50.7 7.2 71 45-120 131-203 (330)
465 PRK08415 enoyl-(acyl carrier p 94.6 1.8 4E-05 40.6 15.6 115 45-162 6-144 (274)
466 PRK08690 enoyl-(acyl carrier p 94.6 2.9 6.3E-05 38.7 16.7 156 43-217 5-188 (261)
467 PRK05671 aspartate-semialdehyd 94.6 0.09 2E-06 51.3 6.7 71 44-121 4-75 (336)
468 PRK14192 bifunctional 5,10-met 94.5 0.11 2.4E-06 49.5 7.0 78 42-164 157-235 (283)
469 PRK08862 short chain dehydroge 94.5 1.3 2.8E-05 40.3 14.0 115 44-162 5-144 (227)
470 COG1052 LdhA Lactate dehydroge 94.5 0.26 5.6E-06 47.9 9.6 98 42-166 144-243 (324)
471 COG0002 ArgC Acetylglutamate s 94.4 0.1 2.2E-06 50.7 6.6 73 44-119 2-77 (349)
472 PRK06719 precorrin-2 dehydroge 94.4 0.38 8.2E-06 41.7 9.6 66 45-121 14-79 (157)
473 TIGR03736 PRTRC_ThiF PRTRC sys 94.4 0.38 8.3E-06 44.8 10.2 36 44-80 11-55 (244)
474 PRK07877 hypothetical protein; 94.4 0.12 2.6E-06 55.3 7.7 74 45-120 108-204 (722)
475 PRK13581 D-3-phosphoglycerate 94.4 0.16 3.5E-06 52.6 8.5 97 43-166 139-237 (526)
476 PRK15116 sulfur acceptor prote 94.4 0.42 9.1E-06 45.2 10.6 33 46-80 32-64 (268)
477 TIGR00936 ahcY adenosylhomocys 94.4 0.32 7E-06 48.7 10.3 92 42-163 193-284 (406)
478 PF01262 AlaDh_PNT_C: Alanine 94.4 0.017 3.7E-07 50.4 1.2 42 36-80 12-53 (168)
479 PRK01438 murD UDP-N-acetylmura 94.4 0.44 9.6E-06 48.5 11.6 124 44-177 16-146 (480)
480 PRK06728 aspartate-semialdehyd 94.4 0.09 1.9E-06 51.5 6.2 71 44-121 5-77 (347)
481 PRK08159 enoyl-(acyl carrier p 94.3 2.5 5.4E-05 39.5 15.7 161 41-217 7-190 (272)
482 PRK15438 erythronate-4-phospha 94.3 0.2 4.3E-06 49.7 8.5 62 42-120 114-175 (378)
483 PRK14175 bifunctional 5,10-met 94.3 0.15 3.2E-06 48.6 7.3 57 42-123 156-212 (286)
484 PRK06436 glycerate dehydrogena 94.3 0.19 4.2E-06 48.3 8.2 96 43-168 121-218 (303)
485 PRK14027 quinate/shikimate deh 94.3 0.3 6.5E-06 46.5 9.4 75 43-120 126-202 (283)
486 PRK14851 hypothetical protein; 94.3 0.21 4.5E-06 53.3 9.1 34 45-80 44-77 (679)
487 PLN03129 NADP-dependent malic 94.2 0.51 1.1E-05 49.0 11.6 103 44-164 321-439 (581)
488 smart00859 Semialdhyde_dh Semi 94.2 0.38 8.2E-06 39.4 8.9 72 46-121 1-74 (122)
489 PRK08594 enoyl-(acyl carrier p 94.2 3.3 7.1E-05 38.3 16.3 157 45-217 8-189 (257)
490 PRK07041 short chain dehydroge 94.2 0.34 7.3E-06 43.6 9.4 107 49-161 2-123 (230)
491 PRK13940 glutamyl-tRNA reducta 94.2 0.16 3.5E-06 51.0 7.9 75 42-123 179-253 (414)
492 PRK12557 H(2)-dependent methyl 94.2 0.41 8.9E-06 46.8 10.5 66 45-120 1-89 (342)
493 PLN00203 glutamyl-tRNA reducta 94.2 0.23 5E-06 51.3 9.1 105 43-167 265-375 (519)
494 PRK03562 glutathione-regulated 94.2 0.33 7.1E-06 51.4 10.4 137 44-212 400-541 (621)
495 KOG1201 Hydroxysteroid 17-beta 94.2 1.3 2.7E-05 42.4 13.2 119 43-164 37-175 (300)
496 cd05212 NAD_bind_m-THF_DH_Cycl 94.2 0.22 4.8E-06 42.4 7.4 56 43-123 27-82 (140)
497 COG0771 MurD UDP-N-acetylmuram 94.1 0.3 6.6E-06 49.4 9.6 129 44-181 7-137 (448)
498 TIGR01809 Shik-DH-AROM shikima 94.1 0.24 5.2E-06 47.1 8.4 75 43-122 124-200 (282)
499 PRK00257 erythronate-4-phospha 94.1 0.2 4.3E-06 49.8 8.0 62 42-120 114-175 (381)
500 TIGR00507 aroE shikimate 5-deh 94.1 0.27 5.9E-06 46.3 8.7 71 43-122 116-188 (270)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.2e-69 Score=515.68 Aligned_cols=309 Identities=68% Similarity=1.075 Sum_probs=280.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||+|+.....++...+++|++++++|||+||+++|.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999999899999999999999999999999998679999999999744456543234566799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHH
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 204 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~ 204 (356)
+||++|+|++..|+++++++++.|.+++|++|+|++|||+|++|+++++++++.+++|++||||+|.||++|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hCCCCCCCcccEEecc-cCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHH
Q 018433 205 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 283 (356)
Q Consensus 205 l~v~~~~v~~~viG~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~ 283 (356)
+|+++++|+++||||| |+ ++||+||++.+..+++++++++|.++++++|++|++.|.|||+|+||+|.++++++++|+
T Consensus 161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl 239 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL 239 (310)
T ss_pred hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999 78 999999999875456666689999999999999999766789999999999999999999
Q ss_pred cCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018433 284 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFS 354 (356)
Q Consensus 284 ~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~ 354 (356)
+|+++++.++++++++|+-.+|+|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|+.|+
T Consensus 240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 88655555778887766535799999999999999999999525999999999999999999999999874
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=4.2e-69 Score=514.62 Aligned_cols=310 Identities=59% Similarity=0.952 Sum_probs=281.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 125 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~ 125 (356)
||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||+|......+..+.+.+|++++++|||+||+++|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999999999999999999999999999999988889999999986433454322223456899999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHh
Q 018433 126 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 205 (356)
Q Consensus 126 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l 205 (356)
+|++|+|++..|.+++++++++|.+++|++++|++|||+|++++++++++++.+|||++||||+|.||++||++++|+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999889999999999999999997799999999999999
Q ss_pred CCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcC
Q 018433 206 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285 (356)
Q Consensus 206 ~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~ 285 (356)
|+++++|+++||||||+++++|+||++++...++++++++|.++++++|++|++.++|||+|+||+|.++++++++|+++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999986689999999986434566668999999999999999976578999999999999999999975
Q ss_pred CCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433 286 LRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355 (356)
Q Consensus 286 ~~~~~~v~~~~~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~ 355 (356)
..+++.++|+++++|+| ++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|++
T Consensus 241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334688988999998 78999999999999999999994389999999999999999999999999875
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.8e-68 Score=501.62 Aligned_cols=297 Identities=38% Similarity=0.584 Sum_probs=270.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+||+|||| |+||+++|+.|+..++.+||+|+|+++ ++|.++||.|+.+. ...+.. ++.| +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence 59999999 999999999998788888999999997 89999999999753 234443 2245 48899999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 199 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~ 199 (356)
|.||||||+|+|++..|++|+++++++|.++|||++++++|||+|++||++ ++.+|+|++||||+ |.||++||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865 78899999999999 9999999999
Q ss_pred HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchH
Q 018433 200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 271 (356)
Q Consensus 200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~ 271 (356)
+||+++|+++++|+++|+|+||+ ++||+||++++.+ + .++++++++.++|+++|++|++.| |.| ++||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999999 9999999999753 1 233567899999999999999976 444 99999
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433 272 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349 (356)
Q Consensus 272 A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~ 349 (356)
|.++++++++|++|++ +++|++ +++|+| ++|+|+|+||++|++|+++++++ +|+++|+++|++|++.||+.++.
T Consensus 231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~ 306 (313)
T COG0039 231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL 306 (313)
T ss_pred HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999974 589997 899999 89999999999999999999996 99999999999999999999999
Q ss_pred hhhhhc
Q 018433 350 GISFSK 355 (356)
Q Consensus 350 ~~~~~~ 355 (356)
+.++..
T Consensus 307 ~~~~~~ 312 (313)
T COG0039 307 VKELVL 312 (313)
T ss_pred HHHhhc
Confidence 987754
No 4
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=2.8e-67 Score=503.91 Aligned_cols=316 Identities=78% Similarity=1.202 Sum_probs=288.3
Q ss_pred hhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433 33 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG 112 (356)
Q Consensus 33 ~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~ 112 (356)
-+.||++++.++.||+||||+|+||+++++.|+.+++++||+|+|++++.++++||.|+.....+..+.+++|++++++|
T Consensus 7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~ 86 (323)
T PLN00106 7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKG 86 (323)
T ss_pred hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCC
Confidence 47899999999999999999999999999999999999999999998888999999999764456554456788899999
Q ss_pred CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechh
Q 018433 113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML 192 (356)
Q Consensus 113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~l 192 (356)
||+||+++|.|+++|++|.+++..|.++++++++++++++|+++++++|||+|.+++++++++++.+++||+||||+|.|
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L 166 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 166 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999777777777889999999999999889
Q ss_pred hHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHH
Q 018433 193 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 272 (356)
Q Consensus 193 d~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A 272 (356)
|++||++++|+++|+++.+|+++|+||||+.++||+||++++..+++++++++|.++++++|++|++.|.|||+|+||+|
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a 246 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA 246 (323)
T ss_pred hHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence 99999999999999999999999999997669999999997643466667899999999999999997546899999999
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433 273 YAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ 348 (356)
Q Consensus 273 ~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~ 348 (356)
.++++++++|++|+++++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus 247 ~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 247 YAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998765556999998887764349999999999999999999559999999999999999998875
No 5
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.5e-65 Score=486.14 Aligned_cols=286 Identities=27% Similarity=0.395 Sum_probs=260.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC---CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
||+|||| |+||+++|+.|+.+++++||+|+|+++ ++|+++||.|+... ..+++. ++|+ ++++|||+||+++
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~--~~~y-~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR--AGDY-DDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE--ECCH-HHhCCCCEEEECC
Confidence 7999999 999999999999999999999999987 79999999997532 245554 2565 8899999999999
Q ss_pred CCCCCCCCc--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433 121 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 197 (356)
Q Consensus 121 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~ 197 (356)
|.|++||++ |+|++..|+++++++++.+.+++|++++|++|||+|+||+++ ++.+|||++||||+ |.||++||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999998765 77889999999999 99999999
Q ss_pred HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C---------CCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267 (356)
Q Consensus 198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t 267 (356)
++++|+++|+++++|+++||||||+ +++|+||++++.+ + ..+.+++++.++++++|++|++ +||+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence 9999999999999999999999999 9999999998743 1 1223578999999999999999 56899
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433 268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345 (356)
Q Consensus 268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 345 (356)
+||+|.++++++++|++|.+ .++|++ +++|+| ++|+|+|+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus 229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~ 304 (307)
T cd05290 229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE 304 (307)
T ss_pred hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 488887 789999 78999999999999999999995 9999999999999999997
Q ss_pred HH
Q 018433 346 SI 347 (356)
Q Consensus 346 ~~ 347 (356)
.+
T Consensus 305 ~~ 306 (307)
T cd05290 305 TI 306 (307)
T ss_pred Hh
Confidence 65
No 6
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-64 Score=482.94 Aligned_cols=313 Identities=61% Similarity=0.968 Sum_probs=280.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
-++.||+||||||+||+++++.|+..+..+||+|+|++.+.++++||.|+.....+.......+++++++|||+||+++|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 35669999999999999999999988999999999995589999999998653344433211343689999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHH
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 201 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~l 201 (356)
.|+++|++|.+++..|++++++++++|++++|+++|+++|||+|++++++.+.+++.+++||+||||++.|||+||++++
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887545568899999999999779999999999
Q ss_pred HHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHH
Q 018433 202 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 281 (356)
Q Consensus 202 a~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~a 281 (356)
|+++|++|++|+++||||||++++||+||++.+ ++++++++++.+++++++++|++.|.|||+|+||+|.++++++++
T Consensus 166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a 243 (321)
T PTZ00325 166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS 243 (321)
T ss_pred HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence 999999999999999999998459999999943 466777999999999999999998766799999999999999999
Q ss_pred HHcCCCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 018433 282 CLRGLRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356 (356)
Q Consensus 282 i~~~~~~~~~v~~~~~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~ 356 (356)
|++|.++++.++++++++|+| .+|+|+|+||++|++|+++++++++|+++|+++|++|++.|++.++++++|++|
T Consensus 244 il~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~ 319 (321)
T PTZ00325 244 VLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK 319 (321)
T ss_pred HHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998744344688888889999 689999999999999999999933999999999999999999999999999986
No 7
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.7e-64 Score=479.15 Aligned_cols=291 Identities=24% Similarity=0.340 Sum_probs=262.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCChhhhhCCCcEEEEc
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
+.+||+|||| |+||+++++.|+.+++++||+|+|+++ +.|+++||+|+.... ..... .++|+ ++++|||+||++
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvit 78 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVT 78 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEEC
Confidence 4579999998 999999999999999999999999987 799999999997322 22332 34676 579999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 198 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~ 198 (356)
+|.|+++||+|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++ ++.+|+|++||||+ |.||+.|++
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~ 154 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFR 154 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997654 77789999999999 999999999
Q ss_pred HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266 (356)
Q Consensus 199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~ 266 (356)
+++|+++++++++|+++||||||+ +++|+||++++.+ ..++++++++.++++++|++|++ +||+
T Consensus 155 ~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~ 230 (312)
T cd05293 155 YLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGY 230 (312)
T ss_pred HHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence 999999999999999999999999 9999999998743 12234588999999999999999 5689
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 018433 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343 (356)
Q Consensus 267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l 343 (356)
|+||+|.++++++++|++|++ .+++++ +++|+| |+|++||+||+||++|+++++++ +|+++|+++|++|++.|
T Consensus 231 t~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i 306 (312)
T cd05293 231 TSWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTL 306 (312)
T ss_pred chHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHH
Confidence 999999999999999999875 488887 789988 58999999999999999999995 99999999999999999
Q ss_pred HHHHH
Q 018433 344 AGSIQ 348 (356)
Q Consensus 344 ~~~~~ 348 (356)
++.++
T Consensus 307 ~~~~~ 311 (312)
T cd05293 307 WEVQK 311 (312)
T ss_pred HHHhh
Confidence 98764
No 8
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=9.6e-64 Score=480.13 Aligned_cols=296 Identities=27% Similarity=0.392 Sum_probs=263.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCChhhhh
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENAL 110 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al 110 (356)
++|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||+|+.. . ..+++. ++| ++++
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~ 77 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF 77 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence 368999999988999999999999999999 999999954 7999999999963 1 223332 345 5899
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEE
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG 188 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG 188 (356)
+|||+||++||.|+++|++|+|++..|++++++++++|.+++| ++++|++|||+|++|+++ ++.+ |||++||||
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG 153 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSA 153 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence 9999999999999999999999999999999999999999998 999999999999998765 6778 999999999
Q ss_pred echhhHHHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCCC----C-CCHHH--HHHHHHHHhcchhHHHhh
Q 018433 189 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEA 260 (356)
Q Consensus 189 ~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~ii~~ 260 (356)
+|.||++||++++|+++|++|++|+ .+||||||+ +++|+||++++.+ + ++++. +++|.+++++++++|++
T Consensus 154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~- 231 (323)
T TIGR01759 154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE- 231 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh-
Confidence 9999999999999999999999995 569999999 9999999998753 1 33333 67999999999999999
Q ss_pred hccCCcccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHH
Q 018433 261 KAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERI 334 (356)
Q Consensus 261 ~~gkg~t~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~ 334 (356)
+||+|+| ++|.++++++++|++|++. ..++|++ +++| +| |+|+|||+||++|++|++++++ + +|+++|++
T Consensus 232 --~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~ 307 (323)
T TIGR01759 232 --ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG 307 (323)
T ss_pred --ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence 5688999 5779999999999999732 2489998 7899 88 5899999999999999999999 6 99999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 018433 335 GLEKAKKELAGSIQKG 350 (356)
Q Consensus 335 ~L~~sa~~l~~~~~~~ 350 (356)
+|++|++.|+++++++
T Consensus 308 ~l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 308 KLDATEDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998764
No 9
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-63 Score=473.24 Aligned_cols=310 Identities=56% Similarity=0.880 Sum_probs=278.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
|||+||||+|.+|+++++.|.. .+...+|+|+|+++ ..++++|+.|......+... ..+|++++++|+|+||+++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 7999999999999999999866 56778999999987 67888999986322344432 245767899999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHH
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA 202 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la 202 (356)
++++|++|.+++..|++++++++++|++++|+++++++|||+|+||+++++.+++.+|+|++||||+|.||++|+++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999998899999999999
Q ss_pred HHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHH
Q 018433 203 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 282 (356)
Q Consensus 203 ~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai 282 (356)
++||+++++|+++||||||++++||+||++ .+.++++++++++.+++++++++|++.|.|+|+|+||+|.++++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999776899999999 3335777779999999999999999976567999999999999999999
Q ss_pred HcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 018433 283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356 (356)
Q Consensus 283 ~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~ 356 (356)
++++++++.++|+++++|+-.+++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|.+|
T Consensus 239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 98865555689987777653468999999999999999999955999999999999999999999999999875
No 10
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=6e-63 Score=478.67 Aligned_cols=291 Identities=24% Similarity=0.370 Sum_probs=263.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
+||+|||| |+||+++++.|+.+++++||+|+|+++ +.|+++||+|+... ...++. .++|+ ++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence 69999998 999999999999999999999999988 79999999998632 223433 23575 67999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 200 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~ 200 (356)
.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++.+|||++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765 67789999999999 79999999999
Q ss_pred HHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433 201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 268 (356)
Q Consensus 201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~ 268 (356)
+|+++|+++++|+++||||||+ +++|+||++++.+ .+++++++++.+++++++++|++ +||+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence 9999999999999999999998 9999999998632 13334578999999999999999 578999
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-C--CccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433 269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T--ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 344 (356)
Q Consensus 269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~--~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 344 (356)
||+|.++++++++|++|.+ .++|++ +++|+| . +++|+|+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus 267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~ 342 (350)
T PLN02602 267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW 342 (350)
T ss_pred HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999975 489998 679998 3 7999999999999999999995 999999999999999999
Q ss_pred HHHHHh
Q 018433 345 GSIQKG 350 (356)
Q Consensus 345 ~~~~~~ 350 (356)
+.++..
T Consensus 343 ~~~~~~ 348 (350)
T PLN02602 343 EVQSQL 348 (350)
T ss_pred HHHHHh
Confidence 887664
No 11
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.5e-63 Score=449.65 Aligned_cols=292 Identities=23% Similarity=0.363 Sum_probs=266.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..||+|+|+ |+||.+.|+.++.+++.+||+|+|.++ ++|++|||+|...+ ..-++. ..+|| .+.+++|+||+||
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~-~~~Dy-~~sa~S~lvIiTA 96 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVV-ASKDY-SVSANSKLVIITA 96 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceE-ecCcc-cccCCCcEEEEec
Confidence 579999999 999999999999999999999999998 89999999998642 222332 24686 7789999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 199 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~ 199 (356)
|..+++|++|++++++|+.+++.+.+++.+|.||+++|++|||+|+|||+. |+.+|||++||||. |+||+.|||+
T Consensus 97 Garq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRFry 172 (332)
T KOG1495|consen 97 GARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARFRY 172 (332)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 89999999999999 9999999999
Q ss_pred HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433 200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267 (356)
Q Consensus 200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t 267 (356)
+++++||++|++++++++||||+ +.||.||.+.+.+ ..+++.|+++.++|...+|+|++. ||+|
T Consensus 173 Li~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KGyT 248 (332)
T KOG1495|consen 173 LIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KGYT 248 (332)
T ss_pred HHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cCch
Confidence 99999999999999999999999 8999999987631 356778999999999999999995 5999
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433 268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 344 (356)
Q Consensus 268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 344 (356)
.|++|.++++++++|+.|++ .++|++ .++|.| .+|+|+|+||++|++|+..++.. +|+++|.++|.+||+.|.
T Consensus 249 swaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~ 324 (332)
T KOG1495|consen 249 SWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLL 324 (332)
T ss_pred HHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHH
Confidence 99999999999999999986 488988 679998 56999999999999999999996 999999999999999998
Q ss_pred HHHHHhh
Q 018433 345 GSIQKGI 351 (356)
Q Consensus 345 ~~~~~~~ 351 (356)
+ +|+.+
T Consensus 325 ~-~q~~l 330 (332)
T KOG1495|consen 325 E-AQKSL 330 (332)
T ss_pred H-HHHhc
Confidence 6 44443
No 12
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=5.5e-62 Score=467.74 Aligned_cols=292 Identities=24% Similarity=0.394 Sum_probs=265.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
.++||+|||| |.||+++++.|+..++++||+|+|+++ ++|+++||.|+... ..+... ++|+ ++++|||+||++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIit 80 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVIT 80 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEe
Confidence 3469999999 999999999999999999999999987 78999999998632 344543 3565 789999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 198 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~ 198 (356)
+|.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++ ++.+|+|++||||+ |.||+.|++
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~ 156 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFR 156 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754 66789999999999 899999999
Q ss_pred HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----------CCCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267 (356)
Q Consensus 199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t 267 (356)
+++|+++|+++++|+++||||||+ +++|+||++++.+ .+++++++++.+++++++++|++ +||++
T Consensus 157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t 232 (315)
T PRK00066 157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGAT 232 (315)
T ss_pred HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCee
Confidence 999999999999999999999999 9999999998742 13446688999999999999999 56899
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433 268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345 (356)
Q Consensus 268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 345 (356)
+||+|.++++++++|+++.+ .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus 233 ~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~ 308 (315)
T PRK00066 233 YYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKE 308 (315)
T ss_pred hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 588887 789999 78999999999999999999995 9999999999999999999
Q ss_pred HHHHh
Q 018433 346 SIQKG 350 (356)
Q Consensus 346 ~~~~~ 350 (356)
.++..
T Consensus 309 ~~~~~ 313 (315)
T PRK00066 309 IMDEA 313 (315)
T ss_pred HHHHh
Confidence 88753
No 13
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=3e-62 Score=470.33 Aligned_cols=299 Identities=22% Similarity=0.300 Sum_probs=263.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCChhhhh
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENAL 110 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al 110 (356)
.+|+||+||||+|+||+++++.|+..++++ ||+|+|+++ ++|+++||+|+.+ . ..+++. +++ ++++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~ 78 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF 78 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence 357899999988999999999999999888 999999954 6899999999862 2 234432 345 5899
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEE
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG 188 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG 188 (356)
+|||+||++||.|+++|++|.|++..|++++++++++|.+++ |++++|++|||+|++|+++ ++.+ |||++||||
T Consensus 79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG 154 (326)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTA 154 (326)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEe
Confidence 999999999999999999999999999999999999999988 7999999999999998875 5667 999999999
Q ss_pred echhhHHHHHHHHHHHhCCCCCCCccc-EEecccCcccccccccCCCCC----C-CCHHH--HHHHHHHHhcchhHHHhh
Q 018433 189 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEA 260 (356)
Q Consensus 189 ~t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~ii~~ 260 (356)
+|.||++||++++|+++++++++|+++ ||||||+ +++|+||++++.+ + +++.+ +++|.+++++++++|++
T Consensus 155 ~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~- 232 (326)
T PRK05442 155 MTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE- 232 (326)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh-
Confidence 999999999999999999999999986 5899999 9999999998853 1 33433 57899999999999999
Q ss_pred hccCCcccchHHHH-HHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433 261 KAGAGSATLSMAYA-AVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL 336 (356)
Q Consensus 261 ~~gkg~t~~s~A~a-~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L 336 (356)
+||+|+|++|.+ +++++++|++|.+. ..++|++ +++|+| |+++|||+||++| +|+++++..++|+++|+++|
T Consensus 233 --~kG~t~~~~a~~~~~~iv~ail~~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l 308 (326)
T PRK05442 233 --ARGASSAASAANAAIDHVRDWVLGTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKI 308 (326)
T ss_pred --CcCCccHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHH
Confidence 568999999999 59999999998521 2489998 679999 5899999999999 99999966349999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 018433 337 EKAKKELAGSIQKGISF 353 (356)
Q Consensus 337 ~~sa~~l~~~~~~~~~~ 353 (356)
++|++.|+++.+.+..+
T Consensus 309 ~~s~~~l~~~~~~~~~~ 325 (326)
T PRK05442 309 DATLAELEEERDAVKHL 325 (326)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.5e-62 Score=468.26 Aligned_cols=281 Identities=25% Similarity=0.428 Sum_probs=254.9
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 49 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 49 IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|||+ |+||+++++.|+..++++||+|+|+++ ++|+++||+|+... ..++.. .+|+ ++++|||+||+++|.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence 6899 999999999999999999999999987 89999999998642 234443 3564 88999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHHH
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la~ 203 (356)
+|||+|.|++..|+++++++++.|++++|++++|++|||+|++|+++ ++.+++|++||||+ |.||+.|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764 67789999999999 89999999999999
Q ss_pred HhCCCCCCCcccEEecccCcccccccccCCCCC----CC-------CHHHHHHHHHHHhcchhHHHhhhccCCcccchHH
Q 018433 204 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----SF-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 272 (356)
Q Consensus 204 ~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~~-------~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A 272 (356)
++|+++++|+++||||||+ +++|+||++++.+ ++ .+.+++++.++++++|++|++ +||+|+|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence 9999999999999999998 9999999998743 11 133477999999999999999 5689999999
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433 273 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345 (356)
Q Consensus 273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 345 (356)
.++++++++|++|++ .++|++ +++|+| .+|+|||+||+||++|+++++++ +|+++|+++|++|++.||+
T Consensus 229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence 999999999999865 589997 789999 67899999999999999999995 9999999999999999873
No 15
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=1.4e-61 Score=478.66 Aligned_cols=301 Identities=22% Similarity=0.254 Sum_probs=265.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhh
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENA 109 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~-------~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a 109 (356)
-.++.||+||||+|+||+++++.|+.+ ++..||+|+|+++ ++|+++||+|+.+. ..+.+. ++| +++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~ 173 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV 173 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence 356789999999999999999999998 7777999999988 89999999998631 234432 355 588
Q ss_pred hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 188 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG 188 (356)
++|||+||+++|.|+++||+|+|++..|+++++++++.|.+ ++|+++||++|||+|++|+++ ++.+|++++|+||
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViG 249 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFH 249 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEE
Confidence 99999999999999999999999999999999999999999 589999999999999998765 6778999999999
Q ss_pred e-chhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC-C----CCHHH--HHHHHHHHhcchhHHHh
Q 018433 189 V-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVE 259 (356)
Q Consensus 189 ~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~ 259 (356)
+ |.||++||+++||+++|+++++| +++||||||+ ++||+||++++.+ + +++.+ +++|.++++++|++|++
T Consensus 250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~ 328 (444)
T PLN00112 250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK 328 (444)
T ss_pred eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 9 99999999999999999999999 6699999999 9999999998853 1 23323 67999999999999999
Q ss_pred hhccCCcccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEec-cCCCCCHHHH
Q 018433 260 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIF-QLGPLNEYER 333 (356)
Q Consensus 260 ~~~gkg~t~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~-~~~~L~~~E~ 333 (356)
+||+++| ++|.++++++.+|+++.+. +.++|++ +++| +| ++|+|||+||++|++|+++++ ++ +|+++|+
T Consensus 329 ---~kG~t~~~s~a~ai~~~I~ail~~~d~-~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~ 403 (444)
T PLN00112 329 ---KWGRSSAASTAVSIADAIKSLVTPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR 403 (444)
T ss_pred ---ccCchhHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence 5677777 9999999999999955442 3599998 7899 48 589999999999999999999 65 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 018433 334 IGLEKAKKELAGSIQKGISFS 354 (356)
Q Consensus 334 ~~L~~sa~~l~~~~~~~~~~~ 354 (356)
++|++|++.|+++.+.+...+
T Consensus 404 ~~l~~Sa~~L~~e~~~~~~~~ 424 (444)
T PLN00112 404 ERIKKSEAELLAEKRCVAHLT 424 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876553
No 16
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=2.7e-61 Score=470.23 Aligned_cols=300 Identities=22% Similarity=0.259 Sum_probs=262.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--chhHHHHHhcCCC-C-CeEEEEeCCCChhhhh
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT-G-AVVRGFLGQPQLENAL 110 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~--D~~~--~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al 110 (356)
.+|.||+||||+|+||+++|+.|+.+++++ +|+|+ |+++ ++|+++||.|+.+ . ..+.+. ++| ++++
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~~ 118 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEVF 118 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence 347999999999999999999999999988 57777 6665 7999999999862 1 234332 355 5899
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
+|||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.+++|++|+||+
T Consensus 119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG~ 194 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFHA 194 (387)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEEe
Confidence 999999999999999999999999999999999999999988 9999999999999998765 67789999999999
Q ss_pred -chhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC-C----CCHHH--HHHHHHHHhcchhHHHhh
Q 018433 190 -TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEA 260 (356)
Q Consensus 190 -t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~ 260 (356)
|.||++||+++||+++++++++| +++||||||+ +++|+||++++.+ + +++.+ +++|.+++++++++|++
T Consensus 195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~- 272 (387)
T TIGR01757 195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK- 272 (387)
T ss_pred cchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999 5999999999 9999999998743 1 22223 68999999999999999
Q ss_pred hccCCcccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCC-C--CCccEEEEeEEEcCCceEEec-cCCCCCHHHHH
Q 018433 261 KAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIF-QLGPLNEYERI 334 (356)
Q Consensus 261 ~~gkg~t~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~d~~~s~P~~ig~~Gv~~i~-~~~~L~~~E~~ 334 (356)
+||++.| |+|.++++++++|+++.+. ..++|++ +++|+ | ++|+|||+||++|++|+++++ ++ +|+++|++
T Consensus 273 --~KG~t~~~s~a~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~ 348 (387)
T TIGR01757 273 --KWGRSSAASTAVSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRE 348 (387)
T ss_pred --ccCchhHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHH
Confidence 4676776 9999999999999955543 3588998 67996 8 589999999999999999996 75 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 018433 335 GLEKAKKELAGSIQKGISFS 354 (356)
Q Consensus 335 ~L~~sa~~l~~~~~~~~~~~ 354 (356)
+|++|++.|+++.+.+.+..
T Consensus 349 ~l~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 349 RIRKSEDELLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998887643
No 17
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.4e-61 Score=463.08 Aligned_cols=294 Identities=28% Similarity=0.382 Sum_probs=260.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGM 113 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~a 113 (356)
.||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++|+++||.|+.+ .....+. +.+ +++++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCC
Confidence 489999999999999999999989888 599999985 7899999999852 2223332 234 6899999
Q ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC-CCCCCEEEech
Q 018433 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM 191 (356)
Q Consensus 114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~-~~~~kviG~t~ 191 (356)
|+||++||.|+++|++|.|++..|+++++++++.|+++| |++++|++|||+|++|+++ ++.+| +|++||||+|.
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~ 153 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR 153 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence 999999999999999999999999999999999999997 9999999999999998764 67788 59999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCCC---------CCHH-HHHHHHHHHhcchhHHHhh
Q 018433 192 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEA 260 (356)
Q Consensus 192 ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~~---------~~~~-~~~~l~~~v~~~~~~ii~~ 260 (356)
||++|||+++|++++++|++| +++||||||+ +++|+||++++.+. ++++ ..++|.+++++++++|++
T Consensus 154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~- 231 (323)
T cd00704 154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK- 231 (323)
T ss_pred HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh-
Confidence 999999999999999999999 5689999999 99999999987431 2222 257899999999999999
Q ss_pred hccCCcccch-HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 018433 261 KAGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG 335 (356)
Q Consensus 261 ~~gkg~t~~s-~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~ 335 (356)
+||+++|+ +|.++++++++|++|++++ .++|++ +++|+| |+|+|||+||+||++||++++++ +|+++|+++
T Consensus 232 --~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~ 307 (323)
T cd00704 232 --KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK 307 (323)
T ss_pred --ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence 46889996 6999999999999998633 499997 789987 47999999999999999999995 999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 018433 336 LEKAKKELAGSIQKGI 351 (356)
Q Consensus 336 L~~sa~~l~~~~~~~~ 351 (356)
|++|++.|+++.+.++
T Consensus 308 l~~s~~~l~~~~~~~~ 323 (323)
T cd00704 308 LKATEEELIEEKEIAL 323 (323)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998764
No 18
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-60 Score=455.49 Aligned_cols=297 Identities=31% Similarity=0.497 Sum_probs=266.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEE
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI 117 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVI 117 (356)
.+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +.+.++|+.|.... ...++. .++|+ ++++|||+||
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEE
Confidence 35679999999 9999999999998887 6899999988 68899999998532 223332 34687 5899999999
Q ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHH
Q 018433 118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR 196 (356)
Q Consensus 118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R 196 (356)
+++|.|+++|++|.|++..|.++++++++.|+++||++|+|++|||+|++++++ ++.+++|++||+|+ |.||++|
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R 154 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSR 154 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHH
Confidence 999999999999999999999999999999999999999999999999998654 67789999999999 5999999
Q ss_pred HHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433 197 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266 (356)
Q Consensus 197 ~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~ 266 (356)
+++++|+++|+++++|+++|+||||+ +++|+||++++.+ .+.+++++++.+++++++++|++.+ |||+
T Consensus 155 ~~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~ 232 (319)
T PTZ00117 155 FRCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS 232 (319)
T ss_pred HHHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence 99999999999999999999999998 9999999998742 1455668899999999999999976 7899
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 344 (356)
Q Consensus 267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 344 (356)
+.||+|.++++++++|++|.+ .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+..|+
T Consensus 233 t~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~ 308 (319)
T PTZ00117 233 AFFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQ 308 (319)
T ss_pred hHHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence 999999999999999999864 589998 789999 56999999999999999999995 999999999999999999
Q ss_pred HHHHHhhh
Q 018433 345 GSIQKGIS 352 (356)
Q Consensus 345 ~~~~~~~~ 352 (356)
+.++....
T Consensus 309 ~~~~~~~~ 316 (319)
T PTZ00117 309 ELTQKAKA 316 (319)
T ss_pred HHHHHHHH
Confidence 99887654
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.8e-60 Score=457.80 Aligned_cols=295 Identities=22% Similarity=0.305 Sum_probs=263.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 111 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~ 111 (356)
+|+||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||+|+.+ ...+++. ++| +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 47899999998999999999999999999 999999954 6899999999863 1234443 345 58999
Q ss_pred CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEEe
Q 018433 112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 189 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG~ 189 (356)
|||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.+ +||++||||+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999998765 5667 5999999999
Q ss_pred chhhHHHHHHHHHHHhCCCCCCCcc-cEEecccCcccccccccCCCCC-----CCCHHH--HHHHHHHHhcchhHHHhhh
Q 018433 190 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-----SFTQEE--TEYLTNRIQNGGTEVVEAK 261 (356)
Q Consensus 190 t~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~-----~~~~~~--~~~l~~~v~~~~~~ii~~~ 261 (356)
|.||+.||++.+|+++|+++++|++ +|||+||+ +++|+||++++.+ .+.+.+ +++|.+++++++++|++
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-- 230 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK-- 230 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999999997 56999998 9999999998742 134433 67999999999999999
Q ss_pred ccCCcccchHH-HHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 018433 262 AGAGSATLSMA-YAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE 337 (356)
Q Consensus 262 ~gkg~t~~s~A-~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~ 337 (356)
+||+++|++| .++++++++|++|++. ..++|++ +++|+| |+++|||+||++|++||++++++ +|+++|+++|+
T Consensus 231 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~ 307 (322)
T cd01338 231 -ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID 307 (322)
T ss_pred -CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence 5689999999 5999999999999851 2588998 679998 58999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHHh
Q 018433 338 KAKKELAGSIQKG 350 (356)
Q Consensus 338 ~sa~~l~~~~~~~ 350 (356)
+|++.|+++.++.
T Consensus 308 ~s~~~l~~~~~~~ 320 (322)
T cd01338 308 ATLAELLEEREAV 320 (322)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.9e-60 Score=456.37 Aligned_cols=288 Identities=25% Similarity=0.395 Sum_probs=260.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+||+|||+ |.+|+++++.|+..++..+|+|+|+++ ++++++||.|+... ...... +.++ +++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence 38999999 999999999999999888999999987 78999999988531 233333 2455 6799999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 199 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~ 199 (356)
|.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++.++||++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 67799999999999 8999999999
Q ss_pred HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCcccc
Q 018433 200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269 (356)
Q Consensus 200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~ 269 (356)
++|+++|+++++|+++|||+||+ +++|+||++++.+ .+.+++++++.++++++|++|++ +||+|+|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence 99999999999999999999999 9999999998743 13345688999999999999999 5689999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433 270 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 347 (356)
Q Consensus 270 s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 347 (356)
++|.++++++++|++|.+ .++|++ +++|+| ++|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~ 304 (306)
T cd05291 229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI 304 (306)
T ss_pred HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999865 588987 789999 78999999999999999999995 999999999999999999876
Q ss_pred H
Q 018433 348 Q 348 (356)
Q Consensus 348 ~ 348 (356)
+
T Consensus 305 ~ 305 (306)
T cd05291 305 K 305 (306)
T ss_pred h
Confidence 5
No 21
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2e-60 Score=432.75 Aligned_cols=337 Identities=69% Similarity=1.069 Sum_probs=315.6
Q ss_pred HHhHHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHH
Q 018433 8 NQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD 87 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~d 87 (356)
++++.|.++++-+ +-..|++....+..||+|.||+|-+|+.+.++|.+++++++|.|||+....|.+.|
T Consensus 3 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaD 71 (345)
T KOG1494|consen 3 LKSLIRSSASLSS-----------GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAAD 71 (345)
T ss_pred hHHHHHhhhhhcc-----------CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccccc
Confidence 5677888888765 33456677777888999999999999999999999999999999999889999999
Q ss_pred HhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433 88 ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 167 (356)
Q Consensus 88 l~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~ 167 (356)
|+|......+..+.+...+++++++||+|||.||+||||||+|+|++..|+.|+++++..+.++||++.+.++|||+|..
T Consensus 72 lSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNst 151 (345)
T KOG1494|consen 72 LSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNST 151 (345)
T ss_pred ccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCccccc
Confidence 99998878888887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCC-CCCcccEEecccCcccccccccCCCCCCCCHHHHHHH
Q 018433 168 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYL 246 (356)
Q Consensus 168 t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l 246 (356)
+++++|++++..-|+|+|+||+|.||..|.+.++++.++++| ++++++|+|+|.+.|++|++|+..+...+++++++.|
T Consensus 152 VPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~L 231 (345)
T KOG1494|consen 152 VPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEAL 231 (345)
T ss_pred chHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 5699999999999999999999998778999999999
Q ss_pred HHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCC
Q 018433 247 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLG 326 (356)
Q Consensus 247 ~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~ 326 (356)
+.++|..|.|+.++|.|+|++.+|+|+|.+++..+++++.+++..++.|+|+....-+-.||+.|+++|++|++++..++
T Consensus 232 t~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~ 311 (345)
T KOG1494|consen 232 THRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLG 311 (345)
T ss_pred HHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCC
Confidence 99999999999999999999999999999999999999998877788899887764466799999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433 327 PLNEYERIGLEKAKKELAGSIQKGISFSK 355 (356)
Q Consensus 327 ~L~~~E~~~L~~sa~~l~~~~~~~~~~~~ 355 (356)
+|+++|++.|+.+..+||+.|+++.+|.+
T Consensus 312 ~lsd~E~~~l~~~~~eLk~sI~KGv~F~~ 340 (345)
T KOG1494|consen 312 KLSDYEEKALEAAKPELKKSIEKGVTFVK 340 (345)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 99999999999999999999999999975
No 22
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=4.4e-60 Score=452.34 Aligned_cols=286 Identities=29% Similarity=0.421 Sum_probs=259.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
|+|||+ |.||+++++.|+..++++||+|+|+++ +.|+++||.|+... ...+... ++|+ ++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence 689999 999999999999999999999999988 79999999998643 2233332 3564 7899999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHH
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA 202 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la 202 (356)
+++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++.+|+|++||||+ |.||+.|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754 77889999999999 7999999999999
Q ss_pred HHhCCCCCCCcccEEecccCcccccccccCCCCC-C----C--CHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHH
Q 018433 203 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----F--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 275 (356)
Q Consensus 203 ~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~--~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~ 275 (356)
+++|+++++|+++|+|+||+ +++|+||++++.+ + + +++.++++.+++++++++|++ +||+++||+|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence 99999999999999999998 8999999998753 1 1 234578999999999999999 5689999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433 276 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 347 (356)
Q Consensus 276 ~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 347 (356)
++++++|+++.+ .++|++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999864 588998 679999 78999999999999999999995 999999999999999999765
No 23
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-59 Score=451.13 Aligned_cols=293 Identities=33% Similarity=0.572 Sum_probs=263.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII 118 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi 118 (356)
+.+||+|||| |+||+++++.++..++. +|+|+|+++ +.+.++|+.|... ....++. .++|+ ++++|||+||+
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence 4569999998 99999999999998874 699999988 6788999999742 1223433 35787 78999999999
Q ss_pred cCCCCCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chh
Q 018433 119 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML 192 (356)
Q Consensus 119 ~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~l 192 (356)
++|.|+++|+ +|.+++..|+++++++++.|+++||++|+|++|||+|++++.+ ++.+++|++||||+ |.|
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l 156 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL 156 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence 9999999999 9999999999999999999999999999999999999998754 67889999999999 599
Q ss_pred hHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhc
Q 018433 193 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA 262 (356)
Q Consensus 193 d~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~ 262 (356)
|+.|+++.+|+++|+++++|+++|+||||+ ++||+||++++.+ .++++++++|.+++++++++|++.+
T Consensus 157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~- 234 (321)
T PTZ00082 157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL- 234 (321)
T ss_pred cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence 999999999999999999999999999999 9999999998742 1455668999999999999999976
Q ss_pred cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 018433 263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK 340 (356)
Q Consensus 263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa 340 (356)
|||+|+||+|.++++++++|++|.+ .++|++ +++|+| .+|+|+|+||+||++|+++++++ +|+++|+++|++|+
T Consensus 235 gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa 310 (321)
T PTZ00082 235 GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESI 310 (321)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHH
Confidence 7899999999999999999999865 599998 789999 67999999999999999999995 99999999999999
Q ss_pred HHHHHHHHH
Q 018433 341 KELAGSIQK 349 (356)
Q Consensus 341 ~~l~~~~~~ 349 (356)
+.|++.++.
T Consensus 311 ~~i~~~~~~ 319 (321)
T PTZ00082 311 KEVKRLEAL 319 (321)
T ss_pred HHHHHHHhh
Confidence 999987653
No 24
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=2.1e-59 Score=448.24 Aligned_cols=290 Identities=30% Similarity=0.498 Sum_probs=260.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||+ |.||+++|+.++..++. +++|+|+++ ..+.++|+.|.... ...+.. .++|+ +++++||+||+++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~-~t~d~-~~~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT-GTNNY-ADTANSDIVVITA 77 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE-ecCCH-HHhCCCCEEEEcC
Confidence 69999999 99999999999998887 799999987 57788888876421 112222 25787 4599999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 199 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~ 199 (356)
|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|++|+++ ++.+|+|++||||+ |.||++|+++
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~~~ 153 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARFRT 153 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 77889999999999 5999999999
Q ss_pred HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHH
Q 018433 200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 274 (356)
Q Consensus 200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a 274 (356)
++|++|++++++|+++||||||+ +++|+||++++.+ + ++++.++++.+++++++++|++.+ |||+|+||+|.+
T Consensus 154 ~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~ 231 (305)
T TIGR01763 154 FIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAAS 231 (305)
T ss_pred HHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHH
Confidence 99999999999999999999999 9999999998753 1 344558999999999999999976 789999999999
Q ss_pred HHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433 275 AVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ 348 (356)
Q Consensus 275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~ 348 (356)
+++++++|++|++ .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++
T Consensus 232 ~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~ 303 (305)
T TIGR01763 232 VVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK 303 (305)
T ss_pred HHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999875 489997 789999 68999999999999999999996 9999999999999999998775
No 25
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.2e-58 Score=441.01 Aligned_cols=288 Identities=28% Similarity=0.445 Sum_probs=261.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
|||+|||+ |.||+++++.|+..++..+++|+|+++ +.+.++|+.|.... ...... ++|+ +++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 69999999 999999999999999888999999987 67899999998532 233433 3565 78999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 200 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~ 200 (356)
.|+++|++|++++..|+++++++++.|++++|+++++++|||+|++++++ ++.+|||++||||+ |.||+.|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765 67789999999999 89999999999
Q ss_pred HHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433 201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 268 (356)
Q Consensus 201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~ 268 (356)
+|+++++++++|+++||||||+ +++|+||++++.+ .+++++++++.+++++++++|++ +||+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence 9999999999999999999999 9999999998642 23345688999999999999999 568999
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433 269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 346 (356)
Q Consensus 269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 346 (356)
||+|.++++++++|++|.+ .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.
T Consensus 229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~ 304 (308)
T cd05292 229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA 304 (308)
T ss_pred HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865 589987 789999 67999999999999999999995 99999999999999999988
Q ss_pred HH
Q 018433 347 IQ 348 (356)
Q Consensus 347 ~~ 348 (356)
++
T Consensus 305 ~~ 306 (308)
T cd05292 305 IE 306 (308)
T ss_pred Hh
Confidence 76
No 26
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2.1e-58 Score=443.82 Aligned_cols=296 Identities=24% Similarity=0.321 Sum_probs=256.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 116 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV 116 (356)
||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++|+++||.|+..... ..+..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence 69999999999999999999988875 799999954 6799999999973211 1122233546899999999
Q ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhH
Q 018433 117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV 194 (356)
Q Consensus 117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~ 194 (356)
|++||.|+++|++|.+++..|++++++++++|.+++ |++++|++|||+|++|+++ ++.++++++++||+ |.||+
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999998765 67777777789999 99999
Q ss_pred HHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCC-C----C----CCHHH--HHHHHHHHhcchhHHHhhhc
Q 018433 195 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----S----FTQEE--TEYLTNRIQNGGTEVVEAKA 262 (356)
Q Consensus 195 ~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~-~----~----~~~~~--~~~l~~~v~~~~~~ii~~~~ 262 (356)
+||+++||+++|+++++|+ ++||||||+ +++|+||++++. + + +++++ +++|.+++++++++|++.+
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999995 699999999 999999999886 3 2 22222 5789999999999999963
Q ss_pred cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCC-C--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433 263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK 338 (356)
Q Consensus 263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~ 338 (356)
++++.||+|.++++++++|+++.+. +.++|++ +++|+ | |+|+|||+||++|++|++.+.++ +|+++|+++|++
T Consensus 234 -~~~t~~~ia~~~~~i~~ai~~~~~~-~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~ 310 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHDWVLGTPE-GTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL 310 (324)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence 3589999999999999999954432 3599998 78999 8 48999999999997777777665 999999999999
Q ss_pred HHHHHHHHHHHhh
Q 018433 339 AKKELAGSIQKGI 351 (356)
Q Consensus 339 sa~~l~~~~~~~~ 351 (356)
|++.|+++++.++
T Consensus 311 s~~~lk~~~~~~~ 323 (324)
T TIGR01758 311 TAKELEEERDEAL 323 (324)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998874
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.4e-58 Score=441.68 Aligned_cols=296 Identities=24% Similarity=0.330 Sum_probs=259.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 111 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~ 111 (356)
+|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ +.++++|+.|+.. ..++.. +++++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 47899999999999999999999888764 999999954 5788999999752 123332 357779999
Q ss_pred CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh-CCCCCCCEEEe
Q 018433 112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV 189 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~-~~~~~~kviG~ 189 (356)
|||+||++||.++++|++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++. +++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~ 152 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA 152 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence 99999999999999999999999999999999999999997 7999999999999998765 555 5788878 888
Q ss_pred -chhhHHHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCC----C-C----CCHHH--HHHHHHHHhcchhH
Q 018433 190 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----C-S----FTQEE--TEYLTNRIQNGGTE 256 (356)
Q Consensus 190 -t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~----~-~----~~~~~--~~~l~~~v~~~~~~ 256 (356)
|.||+.||++++|++|++++++|+ .+||||||+ +++|+||++++. + + +++++ +++|.+++++++++
T Consensus 153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~ 231 (325)
T cd01336 153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231 (325)
T ss_pred eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence 999999999999999999999996 559999999 999999999885 3 1 22222 58999999999999
Q ss_pred HHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHH
Q 018433 257 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYER 333 (356)
Q Consensus 257 ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 333 (356)
|++.+ +|+|+||+|.++++++++|++|.+. +.++|++ +++|+| ++|+|||+||++|++||++++++ +|+++|+
T Consensus 232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~ 307 (325)
T cd01336 232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR 307 (325)
T ss_pred HHHcc--ccchHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence 99963 5799999999999999999998531 2589998 689999 58999999999999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 018433 334 IGLEKAKKELAGSIQKGI 351 (356)
Q Consensus 334 ~~L~~sa~~l~~~~~~~~ 351 (356)
++|++|++.|+++++.++
T Consensus 308 ~~l~~s~~~l~~e~~~~~ 325 (325)
T cd01336 308 EKIDATAKELVEEKETAL 325 (325)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998764
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=5.7e-56 Score=425.41 Aligned_cols=291 Identities=25% Similarity=0.437 Sum_probs=258.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi 118 (356)
|||+|+||+|.+|+++++.|+..++..+|+|+|+++ +++.++|+.|... ....+.. .++|+ +++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence 799999988999999999999999988999999954 6888999998732 1223332 24565 67999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433 119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 197 (356)
Q Consensus 119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~ 197 (356)
++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++ ++.+++|++||||+ |.||+.|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764 67789999999999 79999999
Q ss_pred HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C------CCHHHHHHHHHHHhcchhHHHhhhccCCcccch
Q 018433 198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 270 (356)
Q Consensus 198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s 270 (356)
+++||+++++++++|+++|+||||+ +++|+||++++.+ + ..+.+++++.+++++++++|++. ||++.||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence 9999999999999999999999999 9999999998743 1 22445789999999999999994 5788999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433 271 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 347 (356)
Q Consensus 271 ~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 347 (356)
+|.++++++++|++|++ .++|++ +++|+| .+|+++|+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~ 306 (309)
T cd05294 231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT 306 (309)
T ss_pred HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 488887 678987 34899999999999999999996 999999999999999999876
Q ss_pred HH
Q 018433 348 QK 349 (356)
Q Consensus 348 ~~ 349 (356)
+.
T Consensus 307 ~~ 308 (309)
T cd05294 307 RE 308 (309)
T ss_pred hc
Confidence 53
No 29
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=5.4e-56 Score=424.48 Aligned_cols=287 Identities=34% Similarity=0.566 Sum_probs=257.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
|+|||| |+||+++++.++..++. +|+|+|+++ +.+.++|+.|.... ...+.. .++|+ ++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence 689999 99999999999999888 999999988 67888888886421 223332 24675 779999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHH
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFV 201 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~l 201 (356)
|+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++ ++++++|++||||+ |.||+.|+++++
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765 67789999999999 589999999999
Q ss_pred HHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHH
Q 018433 202 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 276 (356)
Q Consensus 202 a~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~ 276 (356)
|++|++++++|+++|+|+||+ +++|+||++++.+ + +++++++++.+++++++++|++.+ |+|+|+||+|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 999999999999999999999 9999999998753 1 345568999999999999999976 77999999999999
Q ss_pred HHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433 277 KFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 347 (356)
Q Consensus 277 ~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 347 (356)
+++++|++|++ .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus 231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 99999999864 589998 789999 56999999999999999999996 999999999999999999765
No 30
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-56 Score=442.23 Aligned_cols=293 Identities=16% Similarity=0.128 Sum_probs=255.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC--C--chhHHHHHhcCCCC--CeEEEEeCCCChhhhh
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTG--AVVRGFLGQPQLENAL 110 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al 110 (356)
.+|.+|+|+||||++|+++.+.++.++++ -.|+|+|++ . ++|++|||+|+.+. ..+.+. +++ +++|
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHh
Confidence 45789999999999999999999986543 379999994 3 79999999999732 234443 344 6999
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEE
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLL 187 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kvi 187 (356)
+|||+||+++|.||++|++|.|++..|.+++++++++|.+++| ++++|++|||+|++|+++ ++.+ ++|++||+
T Consensus 198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVi 273 (452)
T cd05295 198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNII 273 (452)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEE
Confidence 9999999999999999999999999999999999999999999 889999999999999875 4445 99999999
Q ss_pred EechhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC-------------C----CCHHH--HHHHH
Q 018433 188 GVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYLT 247 (356)
Q Consensus 188 G~t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~-------------~----~~~~~--~~~l~ 247 (356)
|++.+|++|++++||+++|+++++| +++||||||+ ++||+||++++.. + +.+++ .+++.
T Consensus 274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~ 352 (452)
T cd05295 274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFV 352 (452)
T ss_pred EecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHH
Confidence 9976889999999999999999999 6799999999 9999999998732 1 22333 35678
Q ss_pred HHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEecc
Q 018433 248 NRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQ 324 (356)
Q Consensus 248 ~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~ 324 (356)
+.++++++ + +||+|.||+|.|+++++++|++|++.+ .++|++ +++|+| |+|++||+||++|++|++.+.+
T Consensus 353 ~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~ 425 (452)
T cd05295 353 ATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTD 425 (452)
T ss_pred HHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeC
Confidence 88888887 2 578999999999999999999997522 488998 789999 6899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433 325 LGPLNEYERIGLEKAKKELAGSIQKG 350 (356)
Q Consensus 325 ~~~L~~~E~~~L~~sa~~l~~~~~~~ 350 (356)
+ +|+++|+++|++|+++|.++.+.+
T Consensus 426 L-~L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 426 L-ELSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6 999999999999999999998765
No 31
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-55 Score=423.54 Aligned_cols=292 Identities=32% Similarity=0.564 Sum_probs=261.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
++||+|||| |++|+++++.++..++. +|+|+|+++ +++.++|+.|.... ...+.. .++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence 479999999 99999999999998887 999999987 67888998886421 123332 34676 779999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 198 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~ 198 (356)
+|.|+++|++|.+++.+|++++++++++|.+++|++|+|++|||+|++|+++ ++.+++|++||||+ |.||+.|++
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765 67789999999999 699999999
Q ss_pred HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHH
Q 018433 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 273 (356)
Q Consensus 199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~ 273 (356)
++||+++++++++|+++|+|+||+ +++|+||++++.+ + ++++.+++|.++++++++++++.+ +|+++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 999999999999999999999999 9999999998742 1 445557899999999999999964 57899999999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433 274 AAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349 (356)
Q Consensus 274 a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~ 349 (356)
++++++++|+.|.+ .+++++ +++|+| .+|++||+||+||++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus 232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~ 305 (307)
T PRK06223 232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA 305 (307)
T ss_pred HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999864 488887 789998 68999999999999999999995 99999999999999999988864
No 32
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=4.9e-56 Score=423.75 Aligned_cols=272 Identities=22% Similarity=0.325 Sum_probs=241.4
Q ss_pred EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 018433 72 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 145 (356)
Q Consensus 72 el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~ 145 (356)
.|+|+|+++ ++|+++||.|+.. . ..++. ++|.+++++|||+||++||.|+++|++|.+++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999976 7899999999862 2 23332 3454589999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHHHHhCCCCCCC-cccEEecccC
Q 018433 146 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG 222 (356)
Q Consensus 146 ~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~ 222 (356)
+.|.++ +|++++|++|||+|++|+++ ++.+++|++|+||+ |.||++||+++||+++|+++++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999998765 67789999999999 99999999999999999999999 7999999999
Q ss_pred cccccccccCCC----CC-C----CCHHH--HHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCc
Q 018433 223 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAG 291 (356)
Q Consensus 223 ~~~vp~~s~~~v----~~-~----~~~~~--~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~ 291 (356)
++||+||++++ .+ + +.+++ .++|.+++++++++|++.+ ||+|+||+|.++++++++|+++++ +..
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~ 243 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT 243 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence 99999999988 32 1 23333 6789999999999999953 689999999999999999999642 225
Q ss_pred EEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433 292 VVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355 (356)
Q Consensus 292 v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~ 355 (356)
++|++ +++|+| |+++|||+||++|++|++.++++ +|+++|+++|++|++.|+++++.+++.|+
T Consensus 244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~ 309 (309)
T PLN00135 244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS 309 (309)
T ss_pred EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89998 789999 58999999999999999999996 99999999999999999999999988764
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=3.5e-55 Score=418.85 Aligned_cols=271 Identities=21% Similarity=0.271 Sum_probs=237.7
Q ss_pred EEEEEeCCC----chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 018433 72 VLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 146 (356)
Q Consensus 72 el~L~D~~~----~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~ 146 (356)
.|+|+|+++ ++|+++||.|+.+ ....... ++|++++++|||+||++||.|+++|++|.|++..|+++++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 899999977 6899999999972 1222322 46777899999999999999999999999999999999999999
Q ss_pred HHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHHHHhCCCCCCCccc-EEecccCc
Q 018433 147 GIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGV 223 (356)
Q Consensus 147 ~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~ 223 (356)
.|.+++| ++++|++|||+|++|+++. ++.+|||++ +||+ |.||++||+++||++++++|++|+.+ ||||||+
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~- 169 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE- 169 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence 9999995 5889999999999987642 578999999 9999 99999999999999999999999655 9999999
Q ss_pred ccccccccCCC--CC-C------CCHH-HHHHHHHHHhcchhHHHhhhccCCcccchHH-HHHHHHHHHHHcCCCCCCcE
Q 018433 224 TILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMA-YAAVKFADACLRGLRGDAGV 292 (356)
Q Consensus 224 ~~vp~~s~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A-~a~~~li~ai~~~~~~~~~v 292 (356)
+++|+||++++ .+ + ++++ .++++.+++++++++|++ +||+|+|+++ .++++++++|++|++. ..+
T Consensus 170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i 245 (313)
T TIGR01756 170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV 245 (313)
T ss_pred ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence 99999999988 43 1 2332 367899999999999999 5689999977 6999999999997653 359
Q ss_pred EEee-eec--CCC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018433 293 VECA-FVA--SQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIGLEKAKKELAGSIQKGISFS 354 (356)
Q Consensus 293 ~~~~-~~~--g~~--~~d~~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~ 354 (356)
+|++ +++ |+| ++|+++|+||++|++|++++++ + +|+++|+++|++|++.|+++.+.+++.|
T Consensus 246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998 575 388 4799999999999999999999 6 9999999999999999999999988765
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=9e-52 Score=388.34 Aligned_cols=254 Identities=29% Similarity=0.441 Sum_probs=230.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
|+||||+|.+|+++++.|+..+ ...||+|+|+++ +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899998999999999999998 778999999987 789999999986432 33433 36788899999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHH
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 201 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~l 201 (356)
.|+++|++|.+++.+|++++++++++|+++||++|+|++|||+|.+|+++ ++.+|+|++|+||+|.+|+.|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 67789999999999559999999999
Q ss_pred HHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHH
Q 018433 202 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 281 (356)
Q Consensus 202 a~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~a 281 (356)
|+++++++++|+++|||+||+ +++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 999999999999999999999 8999999754 67899999999
Q ss_pred HHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433 282 CLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 347 (356)
Q Consensus 282 i~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 347 (356)
|++|++ .++|++ +++|+| ++|++||+||++|++|+++++++ +|+++|+++|+++++.++..+
T Consensus 198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999854 588887 679998 68999999999999999999995 999999999999999999765
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.9e-49 Score=352.84 Aligned_cols=305 Identities=25% Similarity=0.352 Sum_probs=273.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG 112 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~-----~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~ 112 (356)
+++.+|.|.||+|++|+++.+.++.+. ....|+|+|+.+ ++|..|+|+|+.+ +.++....++|..++|+|
T Consensus 2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhcc
Confidence 357899999999999999999998642 234899999987 7899999999985 555554457888999999
Q ss_pred CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEech
Q 018433 113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM 191 (356)
Q Consensus 113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ 191 (356)
.|+.|+.++.||++||+|.|++..|.+|++..+.++.+|+ |+.+||++.||++..+.++. +.++.+|.+++-++|.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR 157 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR 157 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence 9999999999999999999999999999999999999999 89999999999999988764 5678999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC---------CCCHHHH--HHHHHHHhcchhHHHh
Q 018433 192 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVE 259 (356)
Q Consensus 192 ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~---------~~~~~~~--~~l~~~v~~~~~~ii~ 259 (356)
||++|+..++|.++||+.++| ++++||+|+. +++|+..++++.. .+.|..| .++...|++||..+|+
T Consensus 158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ 236 (332)
T KOG1496|consen 158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK 236 (332)
T ss_pred hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence 999999999999999999999 8999999998 9999999998742 1456666 5899999999999999
Q ss_pred hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433 260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL 336 (356)
Q Consensus 260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L 336 (356)
.| |-++.+|.|.+++++++.|+.+++.+. +++.+ +.+|.| |++..||+||++ ++|-|++++..+++++-++++
T Consensus 237 ar--k~SSA~SaA~aacDhi~dw~~gTpeG~-fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km 312 (332)
T KOG1496|consen 237 AR--KLSSAMSAAKAACDHIRDWWFGTPEGT-FVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKM 312 (332)
T ss_pred hh--hhhhhhhHHHhHhhhhhheecCCCCcc-EEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhh
Confidence 76 567889999999999999999998654 55555 789999 899999999999 689999999889999999999
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 018433 337 EKAKKELAGSIQKGISFSK 355 (356)
Q Consensus 337 ~~sa~~l~~~~~~~~~~~~ 355 (356)
..++++|+++.+.+..+++
T Consensus 313 ~~t~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 313 DLTAKELKEEKDLAYSCLS 331 (332)
T ss_pred hhhHHHHHHhHHHHHHhhc
Confidence 9999999999999988775
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.9e-33 Score=248.47 Aligned_cols=159 Identities=35% Similarity=0.565 Sum_probs=144.9
Q ss_pred chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCC-----------CCCCHHHHHHHHHHHhcchhHHH
Q 018433 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV 258 (356)
Q Consensus 190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~-----------~~~~~~~~~~l~~~v~~~~~~ii 258 (356)
|.||++||++++|+++|++|++++++||||||+ ++||+||++++. ..++++++++|.+++++++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 689999999999999999999999999999999 999999999873 23667788999999999999999
Q ss_pred hhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCc--cEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 018433 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TEL--PFFASKVRLGRQGAEEIFQLGPLNEYERI 334 (356)
Q Consensus 259 ~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d--~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 334 (356)
+.| + |+++||+|.++++++++|++|++ .++|++ +++|+| ..+ +|||+||++|++|++++++.++|+++|++
T Consensus 80 ~~k-~-g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAK-G-GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHH-S-SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eec-c-ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 975 2 89999999999999999999985 588887 779999 334 99999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 018433 335 GLEKAKKELAGSIQKGISFS 354 (356)
Q Consensus 335 ~L~~sa~~l~~~~~~~~~~~ 354 (356)
+|++|++.|+++++++++|+
T Consensus 155 ~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 155 KLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999884
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=1.2e-31 Score=266.45 Aligned_cols=282 Identities=20% Similarity=0.198 Sum_probs=193.9
Q ss_pred CeEEEEcCCCchHHHHHHHH----HhCC---CCcEEEEEeCCC-ch----hHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433 45 FKVAILGAAGGIGQPLAMLM----KINP---LVSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTG 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l----~~~~---~~~el~L~D~~~-~~----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~ 112 (356)
|||+|||| |+ +.++.| +... ..+||+|+|+++ .. ..+..+.+.. ...+++. .|+|+++|++|
T Consensus 1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIID 74 (425)
T ss_pred CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCC
Confidence 69999999 84 455443 3332 358999999998 22 2233333332 3455554 36899999999
Q ss_pred CcEEEEcCCC------------CCCCCC--------cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433 113 MDLVIIPAGV------------PRKPGM--------TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 172 (356)
Q Consensus 113 aDiVIi~ag~------------~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~ 172 (356)
|||||.+..+ |.++|. -......+|++++.++++.|+++||+||+||+|||+|++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~- 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV- 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH-
Confidence 9999996432 334432 2566788999999999999999999999999999999998754
Q ss_pred HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccCcccccccccCCC-----------------
Q 018433 173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKP----------------- 234 (356)
Q Consensus 173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~~~~vp~~s~~~v----------------- 234 (356)
++. +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||+. .||..++
T Consensus 154 ---~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~ 222 (425)
T cd05197 154 ---RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKS 222 (425)
T ss_pred ---HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccC
Confidence 555 378899999877 8899999999999999999999999 9974 2222211
Q ss_pred ---------------------------CCC------CCHHH----H-----------------HHHHHHHhcchh-HHHh
Q 018433 235 ---------------------------PCS------FTQEE----T-----------------EYLTNRIQNGGT-EVVE 259 (356)
Q Consensus 235 ---------------------------~~~------~~~~~----~-----------------~~l~~~v~~~~~-~ii~ 259 (356)
+.. ..+.. . +++.+..+.... .-.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 302 (425)
T cd05197 223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV 302 (425)
T ss_pred ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence 000 00100 0 011111110000 0000
Q ss_pred hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 018433 260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG 335 (356)
Q Consensus 260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~ 335 (356)
....++...|+ ..++++++||.+|++. ++.++ .++|.+ |+|.++++||+++++|+.++.- ++|++..+++
T Consensus 303 ~~~~r~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~L 376 (425)
T cd05197 303 ELIKRGGRKYS--EAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGL 376 (425)
T ss_pred hhhhcCCcccH--HHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHH
Confidence 00011334454 7899999999998763 55555 678875 8999999999999999999877 5999998888
Q ss_pred HHHHHHHHHHHHHHh
Q 018433 336 LEKAKKELAGSIQKG 350 (356)
Q Consensus 336 L~~sa~~l~~~~~~~ 350 (356)
++.-...-+-.++.+
T Consensus 377 i~~~~~~e~l~veAa 391 (425)
T cd05197 377 LRQRKMRERLALEAF 391 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877554444344443
No 38
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=4.1e-33 Score=238.05 Aligned_cols=139 Identities=38% Similarity=0.602 Sum_probs=123.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
|||+||||+|.||+++++.|+++++++||+|+|+++ ++|+++||+|+...........+.+ +++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence 799999999999999999999999999999999997 8999999999864332222222344 5899999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 188 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG 188 (356)
|+++|++|.+++..|++++++++++|.+++|+++++++|||+|++|++ +++.+++|++|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence 999999999999999999999999999999999999999999998765 47889999999998
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=100.00 E-value=2.4e-31 Score=265.11 Aligned_cols=288 Identities=17% Similarity=0.154 Sum_probs=198.2
Q ss_pred CCeEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--ch-hHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCc
Q 018433 44 GFKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TGAVVRGFLGQPQLENALTGMD 114 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~--~l~-~~~~~-~el~L~D~~~--~~-g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD 114 (356)
++||+|||| |++|++.++ .++ ..++. .||+|+|+++ ++ +.++ +.+.. .....++. .++|+++|++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence 369999999 999999887 665 34454 4999999987 33 3333 33321 12334443 3679889999999
Q ss_pred EEEEcCCCC-CCCC--------------CcHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 018433 115 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 171 (356)
Q Consensus 115 iVIi~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~ 171 (356)
|||++++.+ ++++ ++|.+. +.+|++++++++++|+++||+||+|++|||+|++|+.+
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 999999876 4434 456666 89999999999999999999999999999999998643
Q ss_pred HHHHHHhCCCCCCCEEEec--hhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------ccccccccc---C----
Q 018433 172 AEVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLSQ---V---- 232 (356)
Q Consensus 172 ~~~~~~~~~~~~~kviG~t--~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s~---~---- 232 (356)
+ ++|+.||||+| .+++. +.+|+.+|+++++|++++.| ||.. ++.+|.... .
T Consensus 158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~ 227 (431)
T PRK15076 158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR 227 (431)
T ss_pred ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence 3 67889999997 45653 88999999999999999999 4443 133332110 0
Q ss_pred ---CC-----------CC-----------CC----CHHHHHHHH----HHHh------cchhHHH-hhhccCCc--ccch
Q 018433 233 ---KP-----------PC-----------SF----TQEETEYLT----NRIQ------NGGTEVV-EAKAGAGS--ATLS 270 (356)
Q Consensus 233 ---~v-----------~~-----------~~----~~~~~~~l~----~~v~------~~~~~ii-~~~~gkg~--t~~s 270 (356)
.+ +. .+ .++.++++. +..+ ....+.. +.+.++.. ..|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (431)
T PRK15076 228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRS- 306 (431)
T ss_pred hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccc-
Confidence 00 00 11 222222221 1111 1111111 11111100 223
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433 271 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 346 (356)
Q Consensus 271 ~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 346 (356)
+..++++++||.+|.+ .++.++ .++|.+ |+|.++++||+++++|+.++.. ++|++..+++++.-...-+-.
T Consensus 307 -~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~~~e~l~ 381 (431)
T PRK15076 307 -REYASTIIEAIETGEP---SVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNINVQELT 381 (431)
T ss_pred -hHHHHHHHHHHhcCCc---eEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999998876 355555 577875 8999999999999999999877 699999999887765554444
Q ss_pred HHHh
Q 018433 347 IQKG 350 (356)
Q Consensus 347 ~~~~ 350 (356)
++.+
T Consensus 382 veAa 385 (431)
T PRK15076 382 VEAA 385 (431)
T ss_pred HHHH
Confidence 4444
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=100.00 E-value=5.2e-31 Score=261.55 Aligned_cols=286 Identities=19% Similarity=0.204 Sum_probs=194.8
Q ss_pred CeEEEEcCCCchHH-HHHHHHHhC-C--CCcEEEEEeCC-C--ch---hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCc
Q 018433 45 FKVAILGAAGGIGQ-PLAMLMKIN-P--LVSVLHLYDVV-N--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMD 114 (356)
Q Consensus 45 ~KI~IIGa~G~vG~-~~a~~l~~~-~--~~~el~L~D~~-~--~~---g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aD 114 (356)
|||+|||| |++-. .+...|+.. . ..+||+|+|++ + +. ..+.++.+.. ...+++. .|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence 69999999 85411 112234442 2 35899999999 5 21 1222333322 2345544 3689999999999
Q ss_pred EEEEcCCCCCCCCCcH--------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433 115 LVIIPAGVPRKPGMTR--------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 174 (356)
Q Consensus 115 iVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~ 174 (356)
|||++++.++.+++++ ...+.+|++++++++++|+++||+||+|++|||++++|+++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--- 154 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--- 154 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence 9999887665444433 34578999999999999999999999999999999997654
Q ss_pred HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------cccccc----------------
Q 018433 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL---------------- 228 (356)
Q Consensus 175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~---------------- 228 (356)
++.+ +.||||+|+.+ .|+++.+|+.+|+++++|+++++| ||.. ++.+|.
T Consensus 155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~ 229 (419)
T cd05296 155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL 229 (419)
T ss_pred -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence 5554 68999999875 799999999999999999999999 8865 234441
Q ss_pred cccC------CCCCC------CCHHHHH------------------HHHHHHhcc----hhHHHhhhccCCcccchHHHH
Q 018433 229 LSQV------KPPCS------FTQEETE------------------YLTNRIQNG----GTEVVEAKAGAGSATLSMAYA 274 (356)
Q Consensus 229 ~s~~------~v~~~------~~~~~~~------------------~l~~~v~~~----~~~ii~~~~gkg~t~~s~A~a 274 (356)
|+.. .++.. +.++.++ ++.+..... ..+-+. .++.+.|| ..
T Consensus 230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~---~r~g~~y~--e~ 304 (419)
T cd05296 230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELE---KRGGAGYS--EA 304 (419)
T ss_pred hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhH---hhcCcchH--HH
Confidence 1110 00110 1121111 111111111 011111 22344455 78
Q ss_pred HHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433 275 AVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG 350 (356)
Q Consensus 275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~ 350 (356)
++++++||++|++. ++.++ .++|.+ |+|.++++||.++++|+.++.. ++|++..++++..-...=+-.++.+
T Consensus 305 a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l~veAa 380 (419)
T cd05296 305 ALALISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERLTIEAA 380 (419)
T ss_pred HHHHHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988753 55555 678875 8999999999999999999877 6999999988766544433334433
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.97 E-value=8.4e-29 Score=246.61 Aligned_cols=289 Identities=19% Similarity=0.216 Sum_probs=192.7
Q ss_pred CeEEEEcCCCchHHHHHH----HHHhC--CC-CcEEEEEeCCC-ch----hHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433 45 FKVAILGAAGGIGQPLAM----LMKIN--PL-VSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTG 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~----~l~~~--~~-~~el~L~D~~~-~~----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~ 112 (356)
|||+|||| |+ +.++ .|+.. .+ .+||+|+|+++ .. ..+..+.+.. ...+++. .|+|+++|++|
T Consensus 1 ~KI~iIGa-GS---~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGG-GS---TYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTD 74 (437)
T ss_pred CeEEEECC-cH---HHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCC
Confidence 79999999 74 3444 34444 23 58999999998 22 2233333322 2355554 36899999999
Q ss_pred CcEEEEcCCC------------CCCCCC--------cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433 113 MDLVIIPAGV------------PRKPGM--------TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 172 (356)
Q Consensus 113 aDiVIi~ag~------------~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~ 172 (356)
|||||.+..+ |.++|. -....+.||++++.++++.|+++||+||+|++|||++++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~- 153 (437)
T cd05298 75 ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL- 153 (437)
T ss_pred CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH-
Confidence 9999996432 334442 2466789999999999999999999999999999999998654
Q ss_pred HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC----------cccccccc----c------
Q 018433 173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG----------VTILPLLS----Q------ 231 (356)
Q Consensus 173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~----------~~~vp~~s----~------ 231 (356)
++. +|+.||||+|+... .++..+|+.+|+++++++..+.| ||.. ++.+|... .
T Consensus 154 ---~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~ 227 (437)
T cd05298 154 ---RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPP 227 (437)
T ss_pred ---HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcc
Confidence 444 77899999998776 47899999999999999999988 3322 13333211 0
Q ss_pred ----C---C-------------------CCCC-----C-CHHHHHHHHH-------HHhcchhHHHhhh-----ccC--C
Q 018433 232 ----V---K-------------------PPCS-----F-TQEETEYLTN-------RIQNGGTEVVEAK-----AGA--G 265 (356)
Q Consensus 232 ----~---~-------------------v~~~-----~-~~~~~~~l~~-------~v~~~~~~ii~~~-----~gk--g 265 (356)
. . +++. + .++..+++.. .+.+...+.++.. ..+ .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~ 307 (437)
T cd05298 228 DSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEG 307 (437)
T ss_pred cccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence 0 0 1110 1 1111111110 0011111111000 000 0
Q ss_pred cccc--hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 018433 266 SATL--SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 339 (356)
Q Consensus 266 ~t~~--s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~s 339 (356)
.... ..|.++++++++|++|++ .+++++ .++|.| |+|+++|+||+||++|+.++.- ++|++...++++.-
T Consensus 308 ~~~~~~~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~ 383 (437)
T cd05298 308 STFHVDVHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQ 383 (437)
T ss_pred hhhhccchHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHH
Confidence 0110 135889999999999875 488887 678887 7899999999999999999877 69999999987766
Q ss_pred HHHHHHHHHHh
Q 018433 340 KKELAGSIQKG 350 (356)
Q Consensus 340 a~~l~~~~~~~ 350 (356)
...-+-.++.+
T Consensus 384 ~~~e~l~veAa 394 (437)
T cd05298 384 VAYEKLLVEAY 394 (437)
T ss_pred HHHHHHHHHHH
Confidence 55544444444
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.1e-28 Score=235.62 Aligned_cols=292 Identities=21% Similarity=0.254 Sum_probs=193.4
Q ss_pred CCCeEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC-chhHH----HHHhcCCCCCeEEEEeCCCChhhhhCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPGVT----ADISHMDTGAVVRGFLGQPQLENALTGM 113 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~--~l~~~~--~~~el~L~D~~~-~~g~~----~dl~~~~~~~~v~~~~~t~d~~~al~~a 113 (356)
+++||+|||| |+++..-.. .|...+ ...||+|+|+++ ..... ..+.+.. ...+++.. |+|+++||+||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA 78 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA 78 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence 4679999999 855544321 233333 357999999998 32222 2233222 23466543 68999999999
Q ss_pred cEEEEcCC------------CCCCCCCc--------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 018433 114 DLVIIPAG------------VPRKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173 (356)
Q Consensus 114 DiVIi~ag------------~~~~~g~~--------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~ 173 (356)
|||+.+.. .|.|+|.. ......|+++++.+|++.|+++||+||+||+|||+.++|.+
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeA--- 155 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEA--- 155 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHH---
Confidence 99999642 35565532 45567899999999999999999999999999999999764
Q ss_pred HHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCC-CCCcccEEe-cccC---------ccccccccc-----------
Q 018433 174 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-GHAG---------VTILPLLSQ----------- 231 (356)
Q Consensus 174 ~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG-~hg~---------~~~vp~~s~----------- 231 (356)
+++. +|..|++|+|+... -....+|+.||+++ ++++..+.| ||.. .+.+|.+..
T Consensus 156 -v~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~ 231 (442)
T COG1486 156 -VRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEP 231 (442)
T ss_pred -HHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence 4554 44459999998765 46899999999975 999999999 4432 122221110
Q ss_pred --------CC--------C---CCC------CCHHH----HHHH------HHHHhcchhHHHhh------------hccC
Q 018433 232 --------VK--------P---PCS------FTQEE----TEYL------TNRIQNGGTEVVEA------------KAGA 264 (356)
Q Consensus 232 --------~~--------v---~~~------~~~~~----~~~l------~~~v~~~~~~ii~~------------~~gk 264 (356)
.. + ++. ++... .+++ .+.|.++..+.++. ...+
T Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~ 311 (442)
T COG1486 232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR 311 (442)
T ss_pred ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence 00 0 000 00000 0000 01111111111111 0112
Q ss_pred Ccc--cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433 265 GSA--TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK 338 (356)
Q Consensus 265 g~t--~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~ 338 (356)
+.+ .|+ .++++++.||++|++. ++.++ .++|.+ |+|.++++||+++++|++++.. ++|+++-+++++.
T Consensus 312 ~~~~~~~~--e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~ 385 (442)
T COG1486 312 IGAGKYSS--EYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHT 385 (442)
T ss_pred CCcccccH--HHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHH
Confidence 232 444 7899999999999763 55565 578985 8999999999999999999888 6999999999888
Q ss_pred HHHHHHHHHHHh
Q 018433 339 AKKELAGSIQKG 350 (356)
Q Consensus 339 sa~~l~~~~~~~ 350 (356)
....-+-.++.+
T Consensus 386 ~i~~e~l~veA~ 397 (442)
T COG1486 386 NINVEELTVEAA 397 (442)
T ss_pred HHHHHHHHHHHH
Confidence 766655445444
No 43
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.96 E-value=4.4e-27 Score=234.64 Aligned_cols=288 Identities=18% Similarity=0.151 Sum_probs=197.1
Q ss_pred CeEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCcEE
Q 018433 45 FKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV 116 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~--~l~~~-~~-~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aDiV 116 (356)
+||+|||| |++|++.+. .++.. .. ..+|+|+|+++ +.....++.+.. .....++. .++|+++|++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 59999999 999999877 45533 33 34999999988 444444444331 11223333 357999999999999
Q ss_pred EEcCCCCCCCCCcH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433 117 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 174 (356)
Q Consensus 117 Ii~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~ 174 (356)
|++++.+..++.++ .....+|++++.++++.++++||++|++++|||++++|+++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~--- 155 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL--- 155 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence 99987544433333 56678999999999999999999999999999999997654
Q ss_pred HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------cccccccc-----------cCC
Q 018433 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLS-----------QVK 233 (356)
Q Consensus 175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s-----------~~~ 233 (356)
++.++ .|++|+|+. +.+++..+|+.+|+++++|+++++| ||.. ++.+|... ...
T Consensus 156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~ 230 (423)
T cd05297 156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS 230 (423)
T ss_pred -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence 56654 799999865 6789999999999999999999999 4433 23344211 111
Q ss_pred -C-----------CC-------C------CCHHHHHH------------------HHHHHhcchhHHHhh--hccCCccc
Q 018433 234 -P-----------PC-------S------FTQEETEY------------------LTNRIQNGGTEVVEA--KAGAGSAT 268 (356)
Q Consensus 234 -v-----------~~-------~------~~~~~~~~------------------l~~~v~~~~~~ii~~--~~gkg~t~ 268 (356)
+ +. . ..++.... +........ ..+. ....+...
T Consensus 231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 308 (423)
T cd05297 231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR 308 (423)
T ss_pred cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence 1 00 0 11111111 111110000 0000 00011222
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433 269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 344 (356)
Q Consensus 269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 344 (356)
| +..++++++||.+|.+ .++.++ .++|.+ |+|.++++||+|+++|+.++.. ++|++..++++..-...-+
T Consensus 309 ~--~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~e~ 382 (423)
T cd05297 309 S--GEYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINVQE 382 (423)
T ss_pred c--hHHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHHHH
Confidence 3 3779999999999865 355565 678875 8999999999999999999977 6999999998877655544
Q ss_pred HHHHHh
Q 018433 345 GSIQKG 350 (356)
Q Consensus 345 ~~~~~~ 350 (356)
-.++.+
T Consensus 383 l~veA~ 388 (423)
T cd05297 383 LAVEAA 388 (423)
T ss_pred HHHHHH
Confidence 444444
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.87 E-value=2.7e-21 Score=170.76 Aligned_cols=152 Identities=21% Similarity=0.247 Sum_probs=107.1
Q ss_pred eEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC-c----hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433 46 KVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-T----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 116 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~--~l~~~~--~~~el~L~D~~~-~----~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV 116 (356)
||+|||| |++-..... .+...+ ..+||+|+|+++ . ...+..+.+.. ...++.. .|+|+++|++|||||
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence 8999999 877665432 334433 246999999998 2 22233333322 2344443 368999999999999
Q ss_pred EEcCC------------CCCCCCCc----------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433 117 IIPAG------------VPRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 174 (356)
Q Consensus 117 Ii~ag------------~~~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~ 174 (356)
|.+.. .|.++|.. ......|+++.+.++++.|+++|||||+||+|||+.++|..+
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--- 154 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--- 154 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence 99754 35555522 466789999999999999999999999999999999997654
Q ss_pred HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCC
Q 018433 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL 207 (356)
Q Consensus 175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v 207 (356)
.+. +|..|++|+|+... -+.+.+|+.||+
T Consensus 155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM 183 (183)
T ss_dssp -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence 444 44589999998775 478899999874
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=1.3e-07 Score=92.14 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=82.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--------------hHHHHHhcC-CCCCeEEEEeCCCChhhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------------GVTADISHM-DTGAVVRGFLGQPQLENA 109 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--------------g~~~dl~~~-~~~~~v~~~~~t~d~~~a 109 (356)
|||+|+|. |+||...+..|++.|+ +++++|+++.+ |. .+|.+. ....+++. |+|+++|
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgL-e~ll~~~~~~gRl~f---Ttd~~~a 73 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGL-EELLKENLASGRLRF---TTDYEEA 73 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccH-HHHHHhccccCcEEE---EcCHHHH
Confidence 89999999 9999999999999998 99999998711 11 112211 11123553 6899999
Q ss_pred hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHH
Q 018433 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA 171 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~t~~~ 171 (356)
++++|+++|+.|.|.++.- .-++..+...++.|.++.+...++|. |-|++....+-
T Consensus 74 ~~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 74 VKDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred HhcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 9999999999999876532 23456678888888888776444444 68888765543
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.75 E-value=2.8e-08 Score=88.28 Aligned_cols=117 Identities=26% Similarity=0.373 Sum_probs=76.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch---hHHHH-Hh---c-CCC--------CCeEEEEeCCCChh
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTAD-IS---H-MDT--------GAVVRGFLGQPQLE 107 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~---g~~~d-l~---~-~~~--------~~~v~~~~~t~d~~ 107 (356)
||+|||| |.+|..+|..++..|+ +++|+|.++ +. ....+ +. + ... ..+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999999 9999999999999998 999999987 11 11111 11 1 110 123553 46886
Q ss_pred hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433 108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 186 (356)
Q Consensus 108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv 186 (356)
++ .+||+||.+. .++.++.+++...+.+.+ |+++ +.||....... ++. .... .|+|+
T Consensus 75 ~~-~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl~i~---~la-~~~~-~p~R~ 132 (180)
T PF02737_consen 75 EA-VDADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSLSIS---ELA-AALS-RPERF 132 (180)
T ss_dssp GG-CTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS-HH---HHH-TTSS-TGGGE
T ss_pred HH-hhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCCCHH---HHH-hccC-cCceE
Confidence 55 4999999985 567888999999999999 6774 47887765542 222 2222 36688
Q ss_pred EEec
Q 018433 187 LGVT 190 (356)
Q Consensus 187 iG~t 190 (356)
+|+-
T Consensus 133 ig~H 136 (180)
T PF02737_consen 133 IGMH 136 (180)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8874
No 47
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.72 E-value=6.7e-08 Score=92.28 Aligned_cols=122 Identities=23% Similarity=0.312 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--HHH-Hhc---CC--C----CCeEEEEeCCCChhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD-ISH---MD--T----GAVVRGFLGQPQLEN 108 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~~d-l~~---~~--~----~~~v~~~~~t~d~~~ 108 (356)
.+||+|||| |.+|+.+|..++..|+ +|+|+|+++ + .+. ... +.. .. . ...+..+..++|+ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999999 9999999999999777 999999986 1 111 111 111 10 0 0112222335676 5
Q ss_pred hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEE
Q 018433 109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 187 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kvi 187 (356)
++++||+||.++ .+|.++-+++...+.+++ |+++ ..||.+.+.-.-+++. + -.|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aI--lASNTSsl~it~ia~~----~-~rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAI--LASNTSSLSITELAEA----L-KRPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcE--EeeccCCCCHHHHHHH----h-CCchhEE
Confidence 899999999984 788999999999999999 6884 4999998765433322 2 3367888
Q ss_pred Eec
Q 018433 188 GVT 190 (356)
Q Consensus 188 G~t 190 (356)
|+.
T Consensus 138 G~H 140 (307)
T COG1250 138 GLH 140 (307)
T ss_pred EEe
Confidence 873
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=7.2e-07 Score=86.22 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=81.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhH-------HHH-HhcCC-----CCCeEEEEeCCCChhhhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-------TAD-ISHMD-----TGAVVRGFLGQPQLENAL 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~-------~~d-l~~~~-----~~~~v~~~~~t~d~~~al 110 (356)
.||+|||+ |.+|+.+|..++..|+ +|+|+|+++ .... .++ +.... ...+++. ++++++++
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av 81 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV 81 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence 58999999 9999999999999998 999999986 1111 011 11110 0122332 46788899
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
++||+|+.+. .+|..+-+++...+.+++| ++ |+.||.+.....-+ . .... .|+|++|+
T Consensus 82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~l---a-~~~~-~p~R~~g~ 140 (321)
T PRK07066 82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDF---Y-ARAT-HPERCVVG 140 (321)
T ss_pred cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHH---H-HhcC-CcccEEEE
Confidence 9999999984 4667778888899999995 55 56888887654322 2 2222 25678776
No 49
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.54 E-value=1.8e-07 Score=83.44 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=76.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCChhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN 108 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~ 108 (356)
|||+|||. |+||..+|..|+..|+ +++-+|+++. .+..++... ...+++. ++|+++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE 72 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence 79999999 9999999999999998 9999999861 111122211 1234554 468888
Q ss_pred hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433 109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKL 186 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~~~~~~~~~kv 186 (356)
++++||++|++.+.|...+. .-+...+...++.|.++. ++.+|++= |-|.++.-.++..++.+.++.. .=
T Consensus 73 ai~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~ 144 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--ED 144 (185)
T ss_dssp HHHH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TC
T ss_pred hhhccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cC
Confidence 89999999999988765532 112333555666666555 34444433 5888877655555666655432 33
Q ss_pred EEechhh
Q 018433 187 LGVTMLD 193 (356)
Q Consensus 187 iG~t~ld 193 (356)
|+++..+
T Consensus 145 f~la~~P 151 (185)
T PF03721_consen 145 FHLAYSP 151 (185)
T ss_dssp EEEEE--
T ss_pred CeEEECC
Confidence 4554333
No 50
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.51 E-value=6.1e-07 Score=95.80 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--HHH-H----hcCCC--------CCeEEEEeCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD-I----SHMDT--------GAVVRGFLGQPQ 105 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~~d-l----~~~~~--------~~~v~~~~~t~d 105 (356)
..||+|||| |.+|+.+|..++..|+ +|+|+|+++ + .+. ..+ + ..... ..+++. ++|
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~ 408 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TLD 408 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 468999999 9999999999999998 999999987 1 111 111 1 11100 123443 467
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 184 (356)
Q Consensus 106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~ 184 (356)
+ +++++||+||.+. .+|.++.+++...+.+++ |+++ +.||...+-..-++ .... .|+
T Consensus 409 ~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la----~~~~-~p~ 466 (737)
T TIGR02441 409 Y-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSALPIKDIA----AVSS-RPE 466 (737)
T ss_pred H-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHH----hhcC-Ccc
Confidence 7 6899999999984 688999999999999999 5664 48999886653332 2222 257
Q ss_pred CEEEe
Q 018433 185 KLLGV 189 (356)
Q Consensus 185 kviG~ 189 (356)
|++|+
T Consensus 467 r~ig~ 471 (737)
T TIGR02441 467 KVIGM 471 (737)
T ss_pred ceEEE
Confidence 88886
No 51
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.50 E-value=5.7e-07 Score=95.79 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--HHHH-----hcCCC--------CCeEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADI-----SHMDT--------GAVVRGFLGQP 104 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~~dl-----~~~~~--------~~~v~~~~~t~ 104 (356)
+..||+|||| |.+|..+|..++..|+ +|+|+|+++ . .+. +.++ .+... ..+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 3468999999 9999999999999998 999999987 1 111 1111 11100 123433 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183 (356)
Q Consensus 105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~ 183 (356)
|+ +++++||+||.+. .+++++.+++...+.+++ |+++ +.||.+.+...-++ .... .|
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasnTS~l~i~~ia----~~~~-~p 443 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAI--LASNTSTISISLLA----KALK-RP 443 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHH----hhcC-Cc
Confidence 76 7799999999994 678899999999999999 5764 48999886653322 2222 36
Q ss_pred CCEEEec
Q 018433 184 KKLLGVT 190 (356)
Q Consensus 184 ~kviG~t 190 (356)
+|++|+.
T Consensus 444 ~r~ig~H 450 (714)
T TIGR02437 444 ENFCGMH 450 (714)
T ss_pred ccEEEEe
Confidence 7898873
No 52
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1.4e-06 Score=82.89 Aligned_cols=119 Identities=20% Similarity=0.319 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH----Hhc-----CCC---------CCeEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD----ISH-----MDT---------GAVVRGFLGQP 104 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d----l~~-----~~~---------~~~v~~~~~t~ 104 (356)
.+||+|||+ |.+|+.+|..++..|. +|+++|+++ ....+.+ +.+ ... ...++. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 359999999 9999999999998887 999999986 1111111 111 000 012332 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP 183 (356)
Q Consensus 105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~ 183 (356)
|+++++++||+||++. ..+.+..+++...+.++++ +++ +++|....... ++. .... .+
T Consensus 77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~i--i~sntSt~~~~---~~~-~~~~-~~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTI--FATNSSTLLPS---QFA-EATG-RP 135 (287)
T ss_pred CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCE--EEECcccCCHH---HHH-hhcC-Cc
Confidence 8888899999999985 2445667777788888875 553 35666654432 222 2222 24
Q ss_pred CCEEEe
Q 018433 184 KKLLGV 189 (356)
Q Consensus 184 ~kviG~ 189 (356)
.|++|+
T Consensus 136 ~r~vg~ 141 (287)
T PRK08293 136 EKFLAL 141 (287)
T ss_pred ccEEEE
Confidence 578876
No 53
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.48 E-value=2.9e-06 Score=77.61 Aligned_cols=128 Identities=18% Similarity=0.111 Sum_probs=75.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||++|.+|++++..|+..+. +|.++|+++ ......++.+... ....+... ++..++++++|+||++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhcCCEEEEEC
Confidence 7999998449999999999998886 999999876 2333333322110 11112211 23467899999999985
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc-----------HHHHHHHHHHhCCCCC-CCEEE
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----------VPIAAEVFKKAGTYDP-KKLLG 188 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~-----------t~~~~~~~~~~~~~~~-~kviG 188 (356)
-. ..+.++++.+...-++..||-++||.+.- ....++.+++. +|+ .+|+.
T Consensus 77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVk 138 (219)
T TIGR01915 77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVA 138 (219)
T ss_pred CH----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEee
Confidence 21 11233334444333445777889998751 00112334443 566 67877
Q ss_pred e-chhhH
Q 018433 189 V-TMLDV 194 (356)
Q Consensus 189 ~-t~ld~ 194 (356)
. .++..
T Consensus 139 a~~~~~a 145 (219)
T TIGR01915 139 AFHNLSA 145 (219)
T ss_pred ccccCCH
Confidence 6 55553
No 54
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.47 E-value=3.7e-06 Score=89.45 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--c-hhH--HH-HHhc----CCC--------CCeEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--T-PGV--TA-DISH----MDT--------GAVVRGFLGQP 104 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~--~-~g~--~~-dl~~----~~~--------~~~v~~~~~t~ 104 (356)
..||+|||| |.+|+.+|..++. .|+ +|+|+|+++ + .+. .. .+.. ... ...++. ++
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~ 377 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---TT 377 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---eC
Confidence 368999999 9999999999884 788 999999987 1 111 11 1111 100 123443 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP 183 (356)
Q Consensus 105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~ 183 (356)
|+ ++++|||+||.+. .++.++.+++...+.+++| ++ |+.||.......-+++ .. -.|
T Consensus 378 ~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~----~~-~~p 435 (699)
T TIGR02440 378 DY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAA----AA-SRP 435 (699)
T ss_pred Ch-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHH----hc-CCc
Confidence 77 6899999999984 5778999999999999995 66 4489998866533322 22 236
Q ss_pred CCEEEec
Q 018433 184 KKLLGVT 190 (356)
Q Consensus 184 ~kviG~t 190 (356)
+|++|+.
T Consensus 436 ~r~~g~H 442 (699)
T TIGR02440 436 ENVIGLH 442 (699)
T ss_pred ccEEEEe
Confidence 7888863
No 55
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.46 E-value=2.3e-06 Score=91.22 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=83.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--HH----HH-hcCCC--------CCeEEEEeCCCCh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA----DI-SHMDT--------GAVVRGFLGQPQL 106 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~~----dl-~~~~~--------~~~v~~~~~t~d~ 106 (356)
.||+|||| |.+|..+|..++..|+ +|+|+|+++ + .+. .. .+ .+... ..+++. ++|+
T Consensus 314 ~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 387 (715)
T PRK11730 314 KQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLDY 387 (715)
T ss_pred ceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCCH
Confidence 58999999 9999999999999998 999999987 1 111 11 11 11100 123443 4677
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433 107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 185 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k 185 (356)
+++++||+||.+. .+++++.+++...+.+++| ++ |+.||.+.+-..-++ . ... .|+|
T Consensus 388 -~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la---~-~~~-~p~r 445 (715)
T PRK11730 388 -AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLA---K-ALK-RPEN 445 (715)
T ss_pred -HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH---h-hcC-CCcc
Confidence 7799999999994 6788999999999999995 66 448999886643322 2 222 3678
Q ss_pred EEEe
Q 018433 186 LLGV 189 (356)
Q Consensus 186 viG~ 189 (356)
++|+
T Consensus 446 ~~g~ 449 (715)
T PRK11730 446 FCGM 449 (715)
T ss_pred EEEE
Confidence 9887
No 56
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.44 E-value=1.6e-06 Score=82.53 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=80.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh-H--H---HH-HhcCC-C--------CCeEEEEeCCCCh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG-V--T---AD-ISHMD-T--------GAVVRGFLGQPQL 106 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g-~--~---~d-l~~~~-~--------~~~v~~~~~t~d~ 106 (356)
.||+|||+ |.+|..+|..++..|+ +++|+|+++ +.. . . ++ +.+.. . ..+++. ++|+
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~~ 79 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTDL 79 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCCH
Confidence 48999999 9999999999999998 999999987 111 1 1 11 11111 0 123333 4677
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433 107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 184 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~ 184 (356)
+++++||+||.+. .++.++-+++...+.++| + ++ |++||........++ ..... ++
T Consensus 80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la----~~~~~-~~ 137 (286)
T PRK07819 80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLA----AATKR-PG 137 (286)
T ss_pred -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----hhcCC-Cc
Confidence 7799999999984 577888888889999997 4 55 347777775543332 22333 56
Q ss_pred CEEEec
Q 018433 185 KLLGVT 190 (356)
Q Consensus 185 kviG~t 190 (356)
|++|+.
T Consensus 138 r~~g~h 143 (286)
T PRK07819 138 RVLGLH 143 (286)
T ss_pred cEEEEe
Confidence 787774
No 57
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.40 E-value=2.7e-06 Score=90.70 Aligned_cols=119 Identities=19% Similarity=0.320 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC--c-hh--HHHHHh-----cCCC--------CCeEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN--T-PG--VTADIS-----HMDT--------GAVVRGFLGQP 104 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~--~-~g--~~~dl~-----~~~~--------~~~v~~~~~t~ 104 (356)
..||+|||| |.+|+.+|..++ ..|+ +|+|+|.++ + .+ ...+.. .... ..+++. ++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~ 382 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT 382 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence 468999999 999999999998 7788 999999986 1 11 111111 1100 123443 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183 (356)
Q Consensus 105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~ 183 (356)
|+ +++++||+||.+. .+|.++.+++...+.+++ |+++ +.||...+...-++ .... .|
T Consensus 383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~i--lasnTS~l~i~~la----~~~~-~p 440 (708)
T PRK11154 383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTI--FASNTSSLPIGQIA----AAAA-RP 440 (708)
T ss_pred Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHH----HhcC-cc
Confidence 77 7899999999994 688999999999999999 6774 48999886653332 2222 35
Q ss_pred CCEEEec
Q 018433 184 KKLLGVT 190 (356)
Q Consensus 184 ~kviG~t 190 (356)
+|++|+-
T Consensus 441 ~r~ig~H 447 (708)
T PRK11154 441 EQVIGLH 447 (708)
T ss_pred cceEEEe
Confidence 6888873
No 58
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.37 E-value=5.7e-07 Score=81.24 Aligned_cols=122 Identities=21% Similarity=0.334 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-----hhHHHHHhcCCC-----------------CCeEEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMDT-----------------GAVVRG 99 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-----~g~~~dl~~~~~-----------------~~~v~~ 99 (356)
+...|+|||| |.+|+.+|...+..|+ .++|+|.++ + ++....+.+... ..+++
T Consensus 10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~- 85 (298)
T KOG2304|consen 10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK- 85 (298)
T ss_pred cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH-
Confidence 4558999999 9999999999999999 999999988 1 222222222210 01222
Q ss_pred EeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 100 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 100 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
.++|.+.+++|||+||.+ +.+|+.+-+++.+.+.+.|+..- |..||.....-. .+. ...
T Consensus 86 --~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~lt---~ia-~~~ 144 (298)
T KOG2304|consen 86 --TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST-ILATNTSSLSLT---DIA-SAT 144 (298)
T ss_pred --HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce-EEeecccceeHH---HHH-hhc
Confidence 257888999999999887 58999999999999999996433 348898876532 221 222
Q ss_pred CCCCCCEEEec
Q 018433 180 TYDPKKLLGVT 190 (356)
Q Consensus 180 ~~~~~kviG~t 190 (356)
-++.|+.|+.
T Consensus 145 -~~~srf~GlH 154 (298)
T KOG2304|consen 145 -QRPSRFAGLH 154 (298)
T ss_pred -cChhhhceee
Confidence 3467899984
No 59
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.34 E-value=8.3e-06 Score=82.81 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC----CChhhhhCC--Cc
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ----PQLENALTG--MD 114 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~--aD 114 (356)
..+.|.|+||+|++|+.++..++..++ .+|+++|.++ ......++.+.....+++.+.++ .-.+.++++ .|
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 346899999999999999999988754 5999999998 44445556553212233332221 234567888 99
Q ss_pred EEEEcCCCCCCCCCc--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCcc
Q 018433 115 LVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST 167 (356)
Q Consensus 115 iVIi~ag~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t----NPv~~~ 167 (356)
+|+++|....-|-++ -.+-+..|+-..++++++..++.=+..|++.| ||.++|
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence 999999876555443 45678999999999999999888777776665 666655
No 60
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.33 E-value=8.7e-06 Score=77.20 Aligned_cols=118 Identities=21% Similarity=0.365 Sum_probs=78.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH-----H-HHHhcCC-C--------CCeEEEEeCCCCh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV-----T-ADISHMD-T--------GAVVRGFLGQPQL 106 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~-----~-~dl~~~~-~--------~~~v~~~~~t~d~ 106 (356)
.||+|||+ |.+|..++..++..++ +|+++|+++ + .+. . .++.+.. . ...++. ++|+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~ 77 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL 77 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 48999999 9999999999999887 999999987 2 111 0 1111111 0 013332 4576
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433 107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 185 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k 185 (356)
+++++||+||++. ..+.....++...+.++++ ++++ .||-..+-...++ ...+. +.|
T Consensus 78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la----~~~~~-~~r 135 (282)
T PRK05808 78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELA----AATKR-PDK 135 (282)
T ss_pred -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----HhhCC-Ccc
Confidence 5689999999985 3456667788888888885 5544 6777776543332 22233 457
Q ss_pred EEEec
Q 018433 186 LLGVT 190 (356)
Q Consensus 186 viG~t 190 (356)
++|+.
T Consensus 136 ~ig~h 140 (282)
T PRK05808 136 VIGMH 140 (282)
T ss_pred eEEee
Confidence 88873
No 61
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.32 E-value=4.6e-07 Score=85.88 Aligned_cols=120 Identities=20% Similarity=0.200 Sum_probs=74.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEE----EEeCC----CChhhhhC--CCc
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR----GFLGQ----PQLENALT--GMD 114 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~----~~~~t----~d~~~al~--~aD 114 (356)
|.|+||+|++|+.++..|+..++ .+|+++|.++ +.....++........++ ...+. ..+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 68999999999999999998865 4999999998 444555553211111121 11111 22345677 999
Q ss_pred EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCcc
Q 018433 115 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST 167 (356)
Q Consensus 115 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t----NPv~~~ 167 (356)
+|+.+|....-|= ..-.+.+..|+-..+++++...++.-+-.|.+.| ||+++|
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm 138 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM 138 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence 9999987543222 2346778999999999999999988776666654 676665
No 62
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.32 E-value=3.9e-06 Score=80.01 Aligned_cols=118 Identities=14% Similarity=0.233 Sum_probs=74.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH--------Hh---cCCC---------CCeEEEEeCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------GAVVRGFLGQ 103 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d--------l~---~~~~---------~~~v~~~~~t 103 (356)
.||+|||+ |.+|..++..++..|. +|+++|+++ ....+.+ +. +... ...+. .+
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---TS 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---ee
Confidence 58999999 9999999999999988 999999987 2111111 11 1000 01122 23
Q ss_pred CChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD 182 (356)
Q Consensus 104 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~ 182 (356)
+|+ +++++||+||.+. ..+..+.+++.+.+.++++ ++++ +||.......-++ ... -.
T Consensus 78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~la----~~~-~~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEIA----TAL-ER 135 (291)
T ss_pred CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHHH----hhc-CC
Confidence 566 6789999999985 2344556677777888875 5544 5666655432222 222 13
Q ss_pred CCCEEEec
Q 018433 183 PKKLLGVT 190 (356)
Q Consensus 183 ~~kviG~t 190 (356)
+.|++|+.
T Consensus 136 ~~r~ig~h 143 (291)
T PRK06035 136 KDRFIGMH 143 (291)
T ss_pred cccEEEEe
Confidence 56788873
No 63
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.29 E-value=1.8e-06 Score=74.94 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=62.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C------CCeEEEEeCCCChhhhhCCCcEEE
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T------GAVVRGFLGQPQLENALTGMDLVI 117 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~------~~~v~~~~~t~d~~~al~~aDiVI 117 (356)
||+|+|| |+.|.++|..|..++. +|.|+++++.....+.-.+.. . ...+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999999 9999999999999997 999999976211222222221 1 123433 479999999999999
Q ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEec
Q 018433 118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS 161 (356)
Q Consensus 118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~t 161 (356)
++. | ....+++++.+..+-+ +..+++++
T Consensus 75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 974 2 2235678888888774 44555443
No 64
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.26 E-value=9.9e-06 Score=82.30 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---------------CCCeEEEEeCCCChhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TGAVVRGFLGQPQLEN 108 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~d~~~ 108 (356)
.|||+|||+ |+||..+|..|+..|...+++.+|+++.+ +..+.... ....++. |+|+.+
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK 74 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence 489999999 99999999999988654499999998711 11111110 0112332 467778
Q ss_pred hhCCCcEEEEcCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHH
Q 018433 109 ALTGMDLVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPI 170 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~t~~ 170 (356)
++++||++|++.+.|...+- .. + -.-+...+.+.++.|.++.++..+++. |.|.++.-.+
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~ 137 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence 89999999999998864321 00 0 012334466777777777655444443 6888766444
No 65
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.24 E-value=1.4e-05 Score=80.69 Aligned_cols=171 Identities=13% Similarity=0.023 Sum_probs=97.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
+|||.|+||+|+||++++..|+..+. +|+.+|.... +....+.+......+..+.. .-+..++.++|+||.+|+..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECceec
Confidence 58999999999999999999999887 9999997531 11011111111123333221 11234578999999998753
Q ss_pred C--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccH--HHHHHHHHH-hCCCCCCCEEEechhhHHHH
Q 018433 124 R--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTV--PIAAEVFKK-AGTYDPKKLLGVTMLDVVRA 197 (356)
Q Consensus 124 ~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t--~~~~~~~~~-~~~~~~~kviG~t~ld~~R~ 197 (356)
. ....+..+++..|+....++++.+++.. ..+|++|.- +.... ....|-.+. ..-+.+...+|.+.+...++
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~ 273 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL 273 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHH
Confidence 2 2223456778899999999999999875 356655431 10000 000000000 00122334566665555555
Q ss_pred HHHHHHHhCCCCCCCc-ccEEecc
Q 018433 198 NTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 198 ~~~la~~l~v~~~~v~-~~viG~h 220 (356)
-...++..+++..-++ ..++|.+
T Consensus 274 ~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 274 AMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred HHHHHHHhCCCeEEEEEccccCCC
Confidence 5555566666554443 3467754
No 66
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.21 E-value=1.2e-05 Score=76.32 Aligned_cols=116 Identities=17% Similarity=0.276 Sum_probs=78.7
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCCCCC
Q 018433 48 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVPRKP 126 (356)
Q Consensus 48 ~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~ 126 (356)
.|+||+|++|++++..|+..+...+|..+|+........++.+......+.. +....++.+|++++|+||.+|....-.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 3899999999999999999986669999998762211112222211001111 112357788999999999998753333
Q ss_pred C-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 127 G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 127 g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
+ .....+...|+...+.+.+...+..-+ -+|+|.-.+
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~ 118 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSIS 118 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCcc
Confidence 3 456778899999999999999986533 344544443
No 67
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.17 E-value=5e-05 Score=74.03 Aligned_cols=167 Identities=13% Similarity=0.026 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHh-cC--CCCCeEEEEeC----CCChhhhhCCCc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS-HM--DTGAVVRGFLG----QPQLENALTGMD 114 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~-~~--~~~~~v~~~~~----t~d~~~al~~aD 114 (356)
++||.|+||+|++|++++..|+..+. +|+.+|+.. ......++. .. .....+..+.+ ..++.+.++++|
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence 47999999999999999999998887 999999754 111111111 00 00112322221 113345678999
Q ss_pred EEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC------CCccHHHHHHHHHHhCCCCCCCE
Q 018433 115 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKKL 186 (356)
Q Consensus 115 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------v~~~t~~~~~~~~~~~~~~~~kv 186 (356)
+||.+|+.+..+ .....+....|+....++.+.+++.... .++.+|.. .+.. . .+.....|...
T Consensus 93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~--~-----~e~~~~~p~~~ 164 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLP--K-----IEERIGRPLSP 164 (348)
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCC--C-----CCCCCCCCCCh
Confidence 999998764322 1334556789999999999999887543 34444321 1110 0 01111224456
Q ss_pred EEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433 187 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 187 iG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 220 (356)
+|.+.+...++....++..|++...++ ..++|.+
T Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 165 YAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 777765555555556667787776664 5677764
No 68
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.17 E-value=8.2e-06 Score=77.78 Aligned_cols=120 Identities=22% Similarity=0.318 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHH----HHh----cCCCC--------CeEEEEeCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DIS----HMDTG--------AVVRGFLGQPQ 105 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~----dl~----~~~~~--------~~v~~~~~t~d 105 (356)
.+||+|||+ |.+|..+|..|+..+. +|+++|+++ +..... .+. ..... ..++. ++|
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 468999999 9999999999999988 999999986 111111 111 11100 12332 356
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 184 (356)
Q Consensus 106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~ 184 (356)
+ +++++||+||++.- .+..+.+.+...+.+++ |++++ +||...+....+ .... -.+.
T Consensus 78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~l----a~~~-~~~~ 135 (292)
T PRK07530 78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRL----ASAT-DRPE 135 (292)
T ss_pred H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHH----Hhhc-CCcc
Confidence 6 56899999999852 22233445556677776 46644 456655443222 2222 2245
Q ss_pred CEEEech
Q 018433 185 KLLGVTM 191 (356)
Q Consensus 185 kviG~t~ 191 (356)
|++|+..
T Consensus 136 r~~g~h~ 142 (292)
T PRK07530 136 RFIGIHF 142 (292)
T ss_pred cEEEeec
Confidence 7777643
No 69
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.15 E-value=8.5e-06 Score=83.51 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H---H-HHhcCCC---------CCeEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T---A-DISHMDT---------GAVVRGFLGQP 104 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~---~-dl~~~~~---------~~~v~~~~~t~ 104 (356)
+..||+|||+ |.+|+.+|..++..|+ +|+++|+++ + .+. . + .+..... ..+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 4468999999 9999999999999998 999999987 1 111 0 0 1111110 112333 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 184 (356)
Q Consensus 105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~ 184 (356)
|+ +++++||+||.+. .++..+.+.+...+.+++|... |+.||...+-..-+++. .. .+.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA~~----~~-~p~ 136 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIAAG----LA-RPE 136 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHHHh----cC-ccc
Confidence 76 5689999999984 4566677777788988886443 35788877654322222 21 245
Q ss_pred CEEEec
Q 018433 185 KLLGVT 190 (356)
Q Consensus 185 kviG~t 190 (356)
|++|+.
T Consensus 137 r~~G~H 142 (503)
T TIGR02279 137 RVAGLH 142 (503)
T ss_pred ceEEEe
Confidence 677764
No 70
>PLN02427 UDP-apiose/xylose synthase
Probab=98.15 E-value=2.7e-05 Score=76.88 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCC---CCCeEEEEeC----CCChhhhhCCCc
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMD---TGAVVRGFLG----QPQLENALTGMD 114 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~---~~~~v~~~~~----t~d~~~al~~aD 114 (356)
++|||.|+||+|++|++++..|+.. +. +|+.+|.+.... ..+.... ....++.+.+ ..++.++++++|
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~--~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKI--KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhh--hhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 4689999999999999999999987 45 899999754111 1111110 0112332211 134566788999
Q ss_pred EEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 115 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 115 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
+||.+|+..... .....+.+..|+....++.+..++.. ..+|.+|.
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 999999854211 12223456678888888888887654 35666653
No 71
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.14 E-value=1.5e-05 Score=76.60 Aligned_cols=119 Identities=24% Similarity=0.355 Sum_probs=70.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHh---cC----C----CCCeEEEEeCCCChhhhhC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS---HM----D----TGAVVRGFLGQPQLENALT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~---~~----~----~~~~v~~~~~t~d~~~al~ 111 (356)
+||+|||+ |.+|..++..|+..++ +|+++|.++ .......+. .. . ....++. ++|+.++++
T Consensus 5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~ 78 (311)
T PRK06130 5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAVS 78 (311)
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHhc
Confidence 58999999 9999999999998887 999999976 111111110 00 0 0011232 357777899
Q ss_pred CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433 112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT 190 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t 190 (356)
+||+||++.- .......++...+..+++ +++| +||....-..- + ..... .+.+++|+.
T Consensus 79 ~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~~---l-~~~~~-~~~~~ig~h 137 (311)
T PRK06130 79 GADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPITA---I-AQAVT-RPERFVGTH 137 (311)
T ss_pred cCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHHH---H-HhhcC-CcccEEEEc
Confidence 9999999841 223334455556666664 5433 46665544322 2 22211 245777763
No 72
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.14 E-value=1.4e-05 Score=82.16 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=76.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh--HHHH----Hh-cCCC--------CCeEEEEeCCCCh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD----IS-HMDT--------GAVVRGFLGQPQL 106 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g--~~~d----l~-~~~~--------~~~v~~~~~t~d~ 106 (356)
.||+|||+ |.+|+.+|..++..|+ +|+++|+++ + .+ ...+ +. +... ..+++. ++++
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~ 81 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL 81 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 58999999 9999999999999998 999999987 1 11 1111 11 1100 112443 3566
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433 107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 185 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k 185 (356)
+++++||+||.+. .++..+-+.+...+.+.+ |++++ +||...+-..-++ .... .++|
T Consensus 82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~la----~~~~-~p~r 139 (507)
T PRK08268 82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAIA----AALK-HPER 139 (507)
T ss_pred -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC-Cccc
Confidence 5689999999984 456666777777888888 56643 5666654432222 2222 2567
Q ss_pred EEEec
Q 018433 186 LLGVT 190 (356)
Q Consensus 186 viG~t 190 (356)
++|+.
T Consensus 140 ~~G~h 144 (507)
T PRK08268 140 VAGLH 144 (507)
T ss_pred EEEEe
Confidence 77764
No 73
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.06 E-value=2.6e-05 Score=74.25 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=63.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH---HHH-----hcCCC--------CCeEEEEeCCCCh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADI-----SHMDT--------GAVVRGFLGQPQL 106 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~---~dl-----~~~~~--------~~~v~~~~~t~d~ 106 (356)
.||+|||+ |.+|..+|..|+..++ +|+++|+++ ..... .++ ..... ...++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999999 9999999999999888 999999987 11111 011 00000 012332 3577
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q 018433 107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN 165 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~ 165 (356)
++++++||+||.+.. .+..+.+.+...+.++++ ++++ ++|...
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt 119 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST 119 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence 789999999999852 223344455556777774 5543 445444
No 74
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.05 E-value=0.00013 Score=70.94 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE-EeCCCChhhhhCC--CcEE
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLV 116 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~--aDiV 116 (356)
-+.++|.|+||+|++|++++..|+..|. +|+.+|++.. ......+........+.. .....++.+.+++ .|+|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 3457999999999999999999998887 8999997662 111111211100001111 0011233445554 5999
Q ss_pred EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHHHHHHHHHHhCCCCCCCEEEechhh
Q 018433 117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLD 193 (356)
Q Consensus 117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~~~~~~~~~~~~~~~~kviG~t~ld 193 (356)
|.+++.+... ..+....+..|+.....+.+.+.+.+....++++|.. +...... ..-..+....++...+|.+...
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~~~~p~~~Y~~sK~~ 158 (349)
T TIGR02622 80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETDPLGGHDPYSSSKAC 158 (349)
T ss_pred EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCCCCCCCCcchhHHHH
Confidence 9999854221 1233456788999999999998766533456666542 1100000 0000011123345567776655
Q ss_pred HHHHHHHHHHHh-------CCCCCCCc-ccEEecc
Q 018433 194 VVRANTFVAEVL-------GLDPRDVD-VPVVGGH 220 (356)
Q Consensus 194 ~~R~~~~la~~l-------~v~~~~v~-~~viG~h 220 (356)
..++-..+++.+ |++...++ +.++|..
T Consensus 159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 555555556554 44433332 4566643
No 75
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.05 E-value=0.00012 Score=70.90 Aligned_cols=175 Identities=16% Similarity=0.057 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII 118 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi 118 (356)
+++|.|+||+|++|++++..|+..|. +|+.++++. ......++........+..+.+ ..++.++++++|+||.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 56899999999999999999999887 887776654 2221111111110112222211 1234567889999999
Q ss_pred cCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-Ccc------HHHHHHHHH-----HhCCCCCCC
Q 018433 119 PAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NST------VPIAAEVFK-----KAGTYDPKK 185 (356)
Q Consensus 119 ~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-~~~------t~~~~~~~~-----~~~~~~~~k 185 (356)
+|+.......+ ..+++..|+.....+.+.+.+...-..++++|.-. ... .....|-.+ ...-.++..
T Consensus 87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~ 166 (338)
T PLN00198 87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW 166 (338)
T ss_pred eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence 98743211122 23456889999999999998764323555554311 100 000000000 000123344
Q ss_pred EEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433 186 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 186 viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 220 (356)
.+|.+.+...++...+++..|++...++ ..|+|.+
T Consensus 167 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 5666655555555566677777655553 4577764
No 76
>PLN02650 dihydroflavonol-4-reductase
Probab=98.04 E-value=0.0001 Score=71.73 Aligned_cols=178 Identities=15% Similarity=0.049 Sum_probs=99.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEEEe----CCCChhhhhCCCc
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMD 114 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aD 114 (356)
+...++|.|+||+|++|++++..|+..|. +|++++++. ......++... .....+..+. ....+.++++++|
T Consensus 2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence 34556999999999999999999999887 888887764 11111122111 1011222211 1134567788999
Q ss_pred EEEEcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc-----HHHHHHHHH---Hh--CCCCC
Q 018433 115 LVIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIAAEVFK---KA--GTYDP 183 (356)
Q Consensus 115 iVIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~-----t~~~~~~~~---~~--~~~~~ 183 (356)
+||.+|+.......+ ....+..|+.....+.+.+.+...-.+||++|.....- .+...|-.+ .. ...++
T Consensus 80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (351)
T PLN02650 80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT 159 (351)
T ss_pred EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence 999998753211112 23567889999999999998765334566654331100 000000000 00 00001
Q ss_pred CCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433 184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 220 (356)
...+|.+.+....+-..+++..|++..-++ +.++|..
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~ 197 (351)
T PLN02650 160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF 197 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence 124555555555555556677777665553 5577864
No 77
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.04 E-value=3.1e-05 Score=74.51 Aligned_cols=103 Identities=24% Similarity=0.266 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHH--------HHhcCCC---------CCeEEEEeCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA--------DISHMDT---------GAVVRGFLGQPQ 105 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~--------dl~~~~~---------~~~v~~~~~t~d 105 (356)
.+||+|||+ |.+|++++..|+..|+ +|+++|+++ ....+. .+..... ...++. ++|
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 468999998 9999999999999988 999999986 111110 1211110 012332 367
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 167 (356)
Q Consensus 106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~ 167 (356)
+.+++++||+|+.+.. .+....+.+...+.+.+++..++ .||.....
T Consensus 76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~ 122 (308)
T PRK06129 76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL 122 (308)
T ss_pred HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence 8788999999999852 22333444555666677655444 45555443
No 78
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.02 E-value=6.6e-05 Score=71.64 Aligned_cols=103 Identities=21% Similarity=0.303 Sum_probs=65.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH--------HHHhcCCC-C-----CeEEEEeCCCChhhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT--------ADISHMDT-G-----AVVRGFLGQPQLENA 109 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~--------~dl~~~~~-~-----~~v~~~~~t~d~~~a 109 (356)
.||+|||+ |.+|+.+|..|+..|. +|+++|.+. ....+ .++.+... . ........++++ ++
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~ 80 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EE 80 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HH
Confidence 58999999 9999999999998887 999999976 11111 11211110 0 001111123455 67
Q ss_pred hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 167 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~ 167 (356)
+++||+||.+. .++..+...+...+.+++ |+++| +||-..+-
T Consensus 81 ~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~ 123 (295)
T PLN02545 81 LRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS 123 (295)
T ss_pred hCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence 89999999984 344555666666677776 46543 46666543
No 79
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.01 E-value=4.7e-05 Score=78.03 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=68.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHH-------HHh---cCCC--CCeEEEEeCCCChhhhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA-------DIS---HMDT--GAVVRGFLGQPQLENAL 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~-------dl~---~~~~--~~~v~~~~~t~d~~~al 110 (356)
+||+|||+ |.+|+.+|..|+..|+ +|+++|+++ ...... .+. .... ...++. ++|+.+++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence 68999999 9999999999999998 999999986 111110 011 0000 011332 35777899
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 168 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t 168 (356)
++||+||.+. ..+..+.+.+...+.+++|... |+.||..++..
T Consensus 79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 9999999974 2334445556666777775443 45777777554
No 80
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.01 E-value=7.2e-05 Score=75.60 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.|||.|+||+|+||++++..|+..+. +|+.+|... ........ .. ...++.+.. .-...++.++|+||.+|+
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~-D~~~~~l~~~D~ViHlAa 192 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRH-DVVEPILLEVDQIYHLAC 192 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEEC-CccChhhcCCCEEEEeee
Confidence 48999999999999999999999887 899998643 11111111 11 122333221 112346789999999987
Q ss_pred CCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 122 VPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 122 ~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
... ....+-.+.+..|+....++.+.+++.. ..+|++|.
T Consensus 193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS 233 (442)
T PLN02206 193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTST 233 (442)
T ss_pred ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECC
Confidence 532 1122345677899999999999998765 35665543
No 81
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=97.98 E-value=0.00017 Score=69.00 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCC-CCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGFL----GQPQLENALTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~-~~~~v~~~~----~t~d~~~al~~aDiVI 117 (356)
.+||.|+||+|++|++++..|+..|. +|+.++++.. ......+.... ....+..+. ...++.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 46999999999999999999999888 8888887652 11111221110 011222221 1234667789999999
Q ss_pred EcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 018433 118 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS 161 (356)
Q Consensus 118 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~t 161 (356)
.+|+........ ..+.+..|+.....+.+.+.+. ... .+|++|
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 998753221112 2356788999999999998875 333 455443
No 82
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.98 E-value=7.2e-05 Score=79.31 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=106.4
Q ss_pred hhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CC--
Q 018433 30 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ-- 105 (356)
Q Consensus 30 ~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d-- 105 (356)
+-|+-.|.++ +.|||.|+||+|++|++++..|+.. ++ +|+.+|++... . .++.. ...+..+.+. +|
T Consensus 304 ~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~---~~~~~~~~gDl~d~~ 373 (660)
T PRK08125 304 LNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLG---HPRFHFVEGDISIHS 373 (660)
T ss_pred ecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcC---CCceEEEeccccCcH
Confidence 5566677655 7789999999999999999999874 56 99999986521 1 11111 1122222111 11
Q ss_pred --hhhhhCCCcEEEEcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccH--HHHHHHHHH-
Q 018433 106 --LENALTGMDLVIIPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTV--PIAAEVFKK- 177 (356)
Q Consensus 106 --~~~al~~aDiVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t--~~~~~~~~~- 177 (356)
++++++++|+||.+|+... .......+.+..|+....++.+.++++. ..+|.+|.. +.... ....|-...
T Consensus 374 ~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~ 451 (660)
T PRK08125 374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYGMCTDKYFDEDTSNL 451 (660)
T ss_pred HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcCCCCCCCcCcccccc
Confidence 3456889999999987542 2223345677889999999999999875 355555431 11100 000010000
Q ss_pred --hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433 178 --AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 178 --~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 220 (356)
.+.-++...+|.+.+...++-...++..|++...++ ..++|.+
T Consensus 452 ~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 452 IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred ccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 000012236777766566666666777787766665 4467754
No 83
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.97 E-value=0.00012 Score=70.45 Aligned_cols=117 Identities=21% Similarity=0.383 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CC--C------CCeEEEEeCCCChhhhhCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--T------GAVVRGFLGQPQLENALTGM 113 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~--~------~~~v~~~~~t~d~~~al~~a 113 (356)
++||+|+|| |.-|.++|..|+.+++ +++|..+++ ..+.++.. .. + .+.+. .++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence 479999999 9999999999999997 999999876 22223332 21 1 12233 368999999999
Q ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec---CCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS---NPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t---NPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
|+||+.. | ...++++++.+..+- ++..++.+| +|... ..+++++++. +|.++ ++.
T Consensus 73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~--l~~~~-~~v 131 (329)
T COG0240 73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE--LPDNP-IAV 131 (329)
T ss_pred CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH--cCCCe-EEE
Confidence 9999974 3 334566666665443 577777776 44322 2235666665 33344 444
No 84
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.93 E-value=0.00019 Score=67.94 Aligned_cols=166 Identities=14% Similarity=0.056 Sum_probs=95.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe----CCCChhhhhCC--CcEE
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLV 116 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~--aDiV 116 (356)
||.|+||+|++|++++..|+..+...+|+++|.... .....++... ..+..+. ...++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999999987763348899986431 1111122211 1222211 11244566776 8999
Q ss_pred EEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 117 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----NSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 117 Ii~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-----~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
|.+++.... .......++..|+.....+++.+.+...+..++.+|... ...... .......+...+|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence 999875321 112234567889999999999998776565666654311 000000 01112334445666
Q ss_pred chhhHHHHHHHHHHHhCCCCCCCc-ccEEec
Q 018433 190 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGG 219 (356)
Q Consensus 190 t~ld~~R~~~~la~~l~v~~~~v~-~~viG~ 219 (356)
+.....++-..+++..+++..-++ ..++|.
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~ 183 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGP 183 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCC
Confidence 555555555556667776654443 345664
No 85
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.91 E-value=0.00013 Score=65.77 Aligned_cols=97 Identities=21% Similarity=0.343 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
+|+++|+|+ |++|++++..+...++ |+..-..+.....+..-... .+.++. ...++|.+.||+||++. |
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~----~~~~dA~~~aDVVvLAV--P 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG----GSNEDAAALADVVVLAV--P 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc----CChHHHHhcCCEEEEec--c
Confidence 578999999 9999999999999998 88888666522222211111 233443 23468999999999985 3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
+.. +.++.+.++..-.+-+||-.|||.+
T Consensus 70 ----------~~a----~~~v~~~l~~~~~~KIvID~tnp~~ 97 (211)
T COG2085 70 ----------FEA----IPDVLAELRDALGGKIVIDATNPIE 97 (211)
T ss_pred ----------HHH----HHhHHHHHHHHhCCeEEEecCCCcc
Confidence 223 3344455554334667888899964
No 86
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.90 E-value=0.00019 Score=71.81 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=73.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCChhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN 108 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~ 108 (356)
|||+|||. |.+|..+|..|+..|+ +|+.+|++... +.++.... ....++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 68999999 9999999999999888 89999997621 11222210 0012332 357778
Q ss_pred hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHH
Q 018433 109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK 177 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~~ 177 (356)
++++||+||++...|..... .-+...+.+..+.+.++. ++.+|++. |-|.+....+...++.+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999877653221 112333444555555544 45555544 45666554444344333
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.87 E-value=6.1e-05 Score=59.28 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=60.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
||+|||+ |++|++++..|...+ ...+|.++ ++++ ....++.+.. . +..+ +.+..+++++||+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 7999999 999999999999887 33488866 8765 1222232211 1 1221 2256789999999999852
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 163 (356)
|. .+.++++.+....++..+|-++||
T Consensus 71 --p~------------~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --PQ------------QLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --GG------------GHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --HH------------HHHHHHHHHhhccCCCEEEEeCCC
Confidence 11 145666666444578888877776
No 88
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.85 E-value=0.0003 Score=67.71 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHHHHhcCCCCCeEEEEe----CCCChhhhhCCCc
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAVVRGFL----GQPQLENALTGMD 114 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g--~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aD 114 (356)
..++|+|+||+|++|+.+...|+++|+ +|+--=+++ .+. +..+|.... .+++.+. ..+.+.+|+.+||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 457999999999999999999999998 444333333 222 344555332 1222221 1345778999999
Q ss_pred EEEEcCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 115 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 115 iVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
.|+.+|....-... .-.+++.-.++...++.+.+.++. ..+=+|+|+-..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a 131 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA 131 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence 99999875322222 244678899999999999999887 444455655543
No 89
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.81 E-value=8.8e-05 Score=71.32 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=70.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
|||.|+||+|++|++++..|+..|+ +|+.++++.... ..+.+... ..+.. .....++.++++++|+||.+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 6999999999999999999998887 899998764211 11111110 01111 011234677899999999986532
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.. ...++...|......+++.+++.+-+ .+|.+|
T Consensus 76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 11 12234566788888899988877644 455554
No 90
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.80 E-value=0.00018 Score=69.88 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CChhhhhCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVI 117 (356)
+|||.|+||+|++|++++..|+.. +. +|+.+|+... ...++... ..+..+.+. .++.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 369999999999999999999875 55 8999997431 11112111 122322111 12335678999999
Q ss_pred EcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 118 IPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 118 i~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
.+++... ....+-......|+....++++.+++.. ..+|.+|.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 9887532 2223334456778888889999888754 46665543
No 91
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.79 E-value=0.00023 Score=70.74 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=66.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------------CCeEEEEeCCCChhhhhCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENALTG 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~al~~ 112 (356)
|||+|||+ |.||..+|..++. |+ +|+.+|+++.+ +..+..... ....+.. .++|..++.++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~-~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFN-ATLDKNEAYRD 73 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEE-EecchhhhhcC
Confidence 69999999 9999999977774 66 99999998611 111222100 0111221 24566678899
Q ss_pred CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHH
Q 018433 113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI 170 (356)
Q Consensus 113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~ 170 (356)
||+||++...|....... -+...+.+.++.|.+..|+.+|++- |-|.+..-.+
T Consensus 74 ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred CCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence 999999976653211111 1223344444555443455555444 5777665444
No 92
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.79 E-value=0.00037 Score=66.27 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=63.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC---CCeEEE-EeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GAVVRG-FLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~---~~~v~~-~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|+|+ |.+|..++..|...+. +|.++|++..... .+..... ...... ...+++..+ .+++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 69999999 9999999999998887 9999998541111 1111100 011111 012345544 49999999985
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTV 168 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t 168 (356)
-.. -+.++++.+..+ .++..|+...|.++...
T Consensus 75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 321 133444455543 36778888899887653
No 93
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.79 E-value=0.00021 Score=69.10 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVI 117 (356)
.++|.|+||+|++|++++..|+..+...+|+++|.+.... ...++.. ..+..+. ...++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999998875334899999765211 1112211 1222211 1124556778999999
Q ss_pred EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.+||....+ ..+..+.+..|+.....+.+.+.+.... .||++|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2234567889999999999999876433 555554
No 94
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=0.00019 Score=70.62 Aligned_cols=107 Identities=16% Similarity=0.289 Sum_probs=71.0
Q ss_pred hhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc---hhHHHHHhcC--C--C---
Q 018433 29 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--D--T--- 93 (356)
Q Consensus 29 ~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~---~g~~~dl~~~--~--~--- 93 (356)
+||.+-.|++. ||+|||+ |.-|+++|..|..++. ..++.|+.+++. +..+.++++. . +
T Consensus 2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence 57777777765 9999999 9999999999998762 238888887762 2234444432 1 1
Q ss_pred ---CCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEec
Q 018433 94 ---GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CC-PNATVNLIS 161 (356)
Q Consensus 94 ---~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~a~viv~t 161 (356)
+..+.. ++|+.+++++||+||++. | ...++++++.++. +- ++..+|.++
T Consensus 75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 75 IKLPDNIVA---VSDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred CcCCCceEE---ecCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 123433 468888999999999874 2 2335666677765 33 344555554
No 95
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.75 E-value=0.00017 Score=68.70 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=72.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-----CCCeEEE-EeCCCChhhhhCCCcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG-FLGQPQLENALTGMDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~~v~~-~~~t~d~~~al~~aDiVIi 118 (356)
|||+|+|+ |.+|..++..|...+. +|.++++.+.. ..+.+.. ....... ....+|..++.+++|+||+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRA---KALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHH---HHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 69999999 9999999999998887 89999982211 1122111 0011110 0012455555689999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE-echhh
Q 018433 119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTMLD 193 (356)
Q Consensus 119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG-~t~ld 193 (356)
+.-.+ .+.++++.+..+- ++..|+.+.|.++.... +.+. +|++++++ ++...
T Consensus 75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~ 128 (305)
T PRK12921 75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS 128 (305)
T ss_pred Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence 85321 1344555555543 56778788898875432 2332 56677764 34433
No 96
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.74 E-value=0.00024 Score=68.27 Aligned_cols=101 Identities=22% Similarity=0.344 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC------CCCeEEEEeCCCChhhhhCCCcE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL 115 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~------~~~~v~~~~~t~d~~~al~~aDi 115 (356)
+|||+|||+ |.+|+.++..|+..+. ++.++|+++ ......+..+.. ....+.. +++..++++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 379999999 9999999999998887 899999975 221111100100 0011222 3466678899999
Q ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433 116 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 166 (356)
Q Consensus 116 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~ 166 (356)
||++... ..+.++.+.+..+. |+.+++..+|-++.
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9998521 12345555565554 67778878766553
No 97
>PLN02214 cinnamoyl-CoA reductase
Probab=97.73 E-value=0.00058 Score=66.47 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhH-HHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV-TADISHMDTGAVVRGFL----GQPQLENALTGMDLV 116 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~-~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV 116 (356)
.++|.|+||+|++|++++..|+..|. +|+.++++.. ... ...+... ...+..+. ...++.++++++|+|
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 45899999999999999999999887 8888887541 111 1122211 11222211 123456788999999
Q ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
|.+|+... ....+.+..|+.....+.+.+.+.... .|+++|
T Consensus 86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S 126 (342)
T PLN02214 86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS 126 (342)
T ss_pred EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence 99997542 234566788999999999999876543 444443
No 98
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.71 E-value=0.00071 Score=65.66 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=98.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhhC--CCcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALT--GMDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~--~aDiVIi 118 (356)
|||.|+||+|++|++++..|+..+. ..++.+|.....+....+.+......+..+. ...++.++++ ++|+||.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999998775 2466677543111111111111011121111 1123445565 4799999
Q ss_pred cCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCC-CCccHHHH--------HHHHHHhC
Q 018433 119 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNP-VNSTVPIA--------AEVFKKAG 179 (356)
Q Consensus 119 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP-v~~~t~~~--------~~~~~~~~ 179 (356)
+|+.... ......+.+..|+.....+++.+.++. .. ..++.+|-. +......- ...+.+..
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~ 159 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT 159 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence 9986421 112235678899999999999998752 12 245544432 11000000 00001111
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 221 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg 221 (356)
.+.+...+|.+.....++-..+++.+|++...++ ..++|.+.
T Consensus 160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH 202 (352)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence 2345567788766666666667788887765554 45778653
No 99
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.71 E-value=0.0011 Score=63.60 Aligned_cols=175 Identities=16% Similarity=0.071 Sum_probs=96.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcC-CCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aDiVI 117 (356)
.++|.|+||+|++|++++..|+..|. +|++++++... .....+... .....+..+. ...++.++++++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 46899999999999999999999887 88877765511 111111111 1011222211 1234556788999999
Q ss_pred EcCCCCCCC-CC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHH---H-HHHHHHhCCCC------CCC
Q 018433 118 IPAGVPRKP-GM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI---A-AEVFKKAGTYD------PKK 185 (356)
Q Consensus 118 i~ag~~~~~-g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~---~-~~~~~~~~~~~------~~k 185 (356)
.+||..... .. .-...+..|+.....+.+.+.+......|+++|.-....... . ...+.+..... +..
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 162 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ 162 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence 999853211 11 224556789999999999888754223555554321100000 0 00000100011 124
Q ss_pred EEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433 186 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 186 viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 220 (356)
.+|.+.+...++-..+++..|++..-++ +.++|..
T Consensus 163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 5666655555555556666677655453 5567754
No 100
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.71 E-value=0.00082 Score=65.30 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=97.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhhCC--CcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~--aDiVIi 118 (356)
+||.|+||+|++|++++..|+..+. ..++++|.....+....+.+......+.... ...++.+++++ .|+||.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 5899999999999999999998875 2566778643211111122110011121111 11234455663 899999
Q ss_pred cCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCC-CccHHHHHHHHHHhCCCCCCCEE
Q 018433 119 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLL 187 (356)
Q Consensus 119 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNPv-~~~t~~~~~~~~~~~~~~~~kvi 187 (356)
+||..... .......+..|+.....+++.+.++. +. ..++.+|... .....-....+.+.....+...+
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y 160 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY 160 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence 99864321 11235667889999999999988752 12 2555554321 00000000000011123344556
Q ss_pred EechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433 188 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 221 (356)
Q Consensus 188 G~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg 221 (356)
|.+.+...++-..+++.++++..-++ ..++|.+.
T Consensus 161 ~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 161 SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 77766666666777778787665553 55677553
No 101
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.70 E-value=0.00085 Score=67.50 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------------CCeEEEEeCCCChhh
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLEN 108 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~ 108 (356)
+.++|||+|||. |+||..+|..|+. ++ +++.+|+++ ..+..+..... ...+. .+++. +
T Consensus 3 ~~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~--~~ve~l~~G~~~~~e~~~~~l~~~g~l~---~t~~~-~ 72 (425)
T PRK15182 3 GIDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNK--KRILELKNGVDVNLETTEEELREARYLK---FTSEI-E 72 (425)
T ss_pred CCCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCH--HHHHHHHCcCCCCCCCCHHHHHhhCCee---EEeCH-H
Confidence 456799999999 9999999999877 45 999999986 22233332211 01122 23454 5
Q ss_pred hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHH
Q 018433 109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFK 176 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~ 176 (356)
++++||++|++.+.|.+.... ..+..+....+.|.++. +...||+- |-|....-.++...+.
T Consensus 73 ~~~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 789999999998877533211 12222333344555544 34444443 5666655433333333
No 102
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.67 E-value=0.00047 Score=66.97 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------CCeE----EEEeCCCChhhhhCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------GAVV----RGFLGQPQLENALTGM 113 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------~~~v----~~~~~t~d~~~al~~a 113 (356)
+|||+|||+ |.+|+.+|..|...|+ +|.++|+++.. . .+..... .... ..+..+++. ++++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA 74 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence 379999999 9999999999999887 89999985411 1 1111100 0000 001123455 678999
Q ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 167 (356)
Q Consensus 114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~ 167 (356)
|+||++...+. ..++++.+.... ++.+|+..+|..+..
T Consensus 75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99999863221 123344555543 567777788887654
No 103
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.67 E-value=0.00041 Score=66.11 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=73.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
|||.|+||+|++|++++..|+..+. +|+.+|++..... ++.+... ..+.. .....++.++++++|+||..++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 5899999999999999999998887 8999998652111 1111110 11111 111124556788999999988643
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
.....+.......|+.....+++.+.+..-. .++++|.
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 113 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS 113 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence 2223345566788999999999988876433 4555543
No 104
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.66 E-value=0.00034 Score=67.69 Aligned_cols=98 Identities=18% Similarity=0.384 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc----CC------CCCeEEEEeCCCChhhhh-CCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TGAVVRGFLGQPQLENAL-TGM 113 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~----~~------~~~~v~~~~~t~d~~~al-~~a 113 (356)
|||+|||| |.+|+.++..|...+. +|.|+++++. .+..+.. .. ....++. ++|+.+++ .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence 68999999 9999999999998887 8999998652 1222221 11 1112332 35666776 589
Q ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCCc
Q 018433 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNS 166 (356)
Q Consensus 114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~viv~tNPv~~ 166 (356)
|+||++.- ...+.++++.+.. + .++..++..+|=.+.
T Consensus 73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999842 1224455555554 3 367777777777643
No 105
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.64 E-value=0.00021 Score=70.50 Aligned_cols=170 Identities=15% Similarity=0.071 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE--EeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~a 120 (356)
..|||.|+||+|++|++++..|...|+ +|+.+|+... .. +........+.. .....++..+++++|+||.+|
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~-~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKN-EH---MSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccc-cc---cccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 457999999999999999999998887 9999997531 00 000000001110 000122345578999999998
Q ss_pred CCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHH------HHHHHHHHhCCCCCCCEEEec
Q 018433 121 GVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVP------IAAEVFKKAGTYDPKKLLGVT 190 (356)
Q Consensus 121 g~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~------~~~~~~~~~~~~~~~kviG~t 190 (356)
+.....+ ......+..|+.....+++.+++...+ .+|.+|.. +.--.. -..+ .....+.+...+|.+
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E--~~~~p~~p~s~Yg~s 170 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKE--SDAWPAEPQDAYGLE 170 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCc--ccCCCCCCCCHHHHH
Confidence 6432111 122334578999999999999877655 44444432 110000 0000 000023344566666
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433 191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 221 (356)
Q Consensus 191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg 221 (356)
.....++-...++..|++..-++ ..++|.++
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 55555555555677777655553 45777654
No 106
>PRK06194 hypothetical protein; Provisional
Probab=97.63 E-value=0.0017 Score=60.94 Aligned_cols=159 Identities=19% Similarity=0.153 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------ 111 (356)
.++|.|+||+|.+|++++..|+..|. +|+++|.+. +.....++... ...+..+.. -+| ++++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999887 899999875 23333334322 122322211 122 223333
Q ss_pred -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCC-----cEEEEecCCCCccHHHHHHHH
Q 018433 112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPN-----ATVNLISNPVNSTVPIAAEVF 175 (356)
Q Consensus 112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~-----a~viv~tNPv~~~t~~~~~~~ 175 (356)
..|+||..+|..... ..+ -...+..|+.....+++. +.+.+.+ +.++++|.-....
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 153 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL-------- 153 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--------
Confidence 469999999864321 111 122345555544444444 5554432 5666655433211
Q ss_pred HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433 176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218 (356)
Q Consensus 176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG 218 (356)
+.+..-.++.+......+...++..++.....+++..+.
T Consensus 154 ----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~ 192 (287)
T PRK06194 154 ----APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC 192 (287)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 233334556655444556677777777666666655444
No 107
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=0.00036 Score=67.10 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..|||+|||+ |.+|.+++..|...++ +|.++|++.. +++.+++++||+||++.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v-- 55 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV-- 55 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--
Confidence 3579999999 9999999999999988 9999998641 24567889999999984
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecC
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN 162 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tN 162 (356)
| ...+.++++.+..+ .|+.+++..|+
T Consensus 56 p--------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 56 S--------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred C--------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 2 12345555666543 46777777776
No 108
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.62 E-value=0.00059 Score=66.47 Aligned_cols=173 Identities=17% Similarity=0.084 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALTGMDLV 116 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiV 116 (356)
..|||.|+||+|++|++++..|+..|. +|++++.+... ....++.. ...+..+.. ..++.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 357999999999999999999998887 88888775421 11112211 122332211 12345667889999
Q ss_pred EEcCCCCCCC---C-CcHH-----HHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccH-------HHHHHH----H
Q 018433 117 IIPAGVPRKP---G-MTRD-----DLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTV-------PIAAEV----F 175 (356)
Q Consensus 117 Ii~ag~~~~~---g-~~r~-----~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t-------~~~~~~----~ 175 (356)
|.+|+..... . .+-. ..+..|+.....+.+.+.+...-.+++++|.- +.... ....|- .
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864211 1 1111 23344457788888887765322355555431 11000 000000 0
Q ss_pred HH-hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433 176 KK-AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 176 ~~-~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 220 (356)
.. ....++.-.+|.+.+...++-..+++..|++..-++ ..++|.+
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence 00 000112235677766666666667777776655553 4566654
No 109
>PLN02778 3,5-epimerase/4-reductase
Probab=97.62 E-value=0.001 Score=63.61 Aligned_cols=91 Identities=22% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh--CCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~ 119 (356)
...|||.|+||+|++|++++..|...|. ++++...+. .+. ..+..++ .++|+||.+
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~--------~~~------------~~v~~~l~~~~~D~ViH~ 64 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRL--------ENR------------ASLEADIDAVKPTHVFNA 64 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCcc--------CCH------------HHHHHHHHhcCCCEEEEC
Confidence 3458999999999999999999998887 666442211 000 0011122 268999999
Q ss_pred CCCCCCCC-----CcHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018433 120 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 154 (356)
Q Consensus 120 ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~ 154 (356)
|+....+. ....+.+..|+.....+++.+++....
T Consensus 65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98643222 234567889999999999999987543
No 110
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.61 E-value=0.00036 Score=60.77 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
++||++||. |.+|+.++..|+..++ +|+.+|++. ....++.+.. .... .++.+++++||+||.+-
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence 479999999 9999999999999998 999999864 2223344322 3332 45788999999999973
No 111
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.60 E-value=0.00041 Score=67.77 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC----CCC-------CeEEEEeCCCChhhhh
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTG-------AVVRGFLGQPQLENAL 110 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~----~~~-------~~v~~~~~t~d~~~al 110 (356)
.++|||+|+|+ |.+|+.++..|...+ +++++..++. .+.++... ... ..+. .++|+.+++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~---~t~d~~~a~ 75 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLR---ATTDFAEAA 75 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeE---EECCHHHHH
Confidence 35689999999 999999999999877 3567776542 22222211 111 1222 246777889
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 166 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~ 166 (356)
+++|+||++.- ...+.++++.+..+- ++..+|.++|-.+.
T Consensus 76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 99999999842 223556666666544 67778888887764
No 112
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.59 E-value=0.0019 Score=61.92 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=70.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aDiVI 117 (356)
.++|.|+||+|++|++++..|+..|. +|+....+. .......+... .....+..+. ...++.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 35999999999999999999998887 777555443 21122222211 1111223221 1234567788999999
Q ss_pred EcCCCCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 118 IPAGVPRK-PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 118 i~ag~~~~-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.+|+.... ......+++..|+.....+.+.+.+...-..||.+|
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S 127 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS 127 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 99875321 111223456789999999998887652112455443
No 113
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.59 E-value=0.00076 Score=64.93 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=70.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC--CCcEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV 116 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~--~aDiV 116 (356)
|||.|+||+|++|++++..|+..+. +|+++|... .......+.+.. ...+..+. .-+| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 6899999999999999999998887 889998643 111111122111 01111111 1122 233454 68999
Q ss_pred EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
|.+++..... .....+.+..|+.....+++.+++..-. .++.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 9998764321 1234567789999999999998876433 455444
No 114
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.00058 Score=64.60 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=97.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCC-cEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGM-DLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~a-DiVIi~ag~ 122 (356)
|+|.|+||+|++|++++..|+..|+ +|+.+|.........+ .+... ...+.. .....+++++. |.||.+++.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence 3599999999999999999999988 9999998651111111 11110 011111 12234556677 999999887
Q ss_pred CCCCCCcH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH-H----HHHHHHHHhCCCCCCCEEEechhhH
Q 018433 123 PRKPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-P----IAAEVFKKAGTYDPKKLLGVTMLDV 194 (356)
Q Consensus 123 ~~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t-~----~~~~~~~~~~~~~~~kviG~t~ld~ 194 (356)
...++..+ .++...|+...+++.+..++ +.-.+++..|. +...- . .+.|-. .. ..+...+|.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss-~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~ 149 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASS-VSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAA 149 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCC-CceECCCCCCCCccccc--CC-CCCCCHHHHHHHHH
Confidence 65444332 34789999999999999998 43334444322 11110 0 001100 11 11222466666555
Q ss_pred HHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433 195 VRANTFVAEVLGLDPRDVD-VPVVGGHAG 222 (356)
Q Consensus 195 ~R~~~~la~~l~v~~~~v~-~~viG~hg~ 222 (356)
.+.-...++..|++..-++ ..++|....
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence 5555555556677777776 467875543
No 115
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.0014 Score=62.27 Aligned_cols=162 Identities=15% Similarity=0.064 Sum_probs=104.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCC-CCeEEEEeCCCChhhhh--CCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-GAVVRGFLGQPQLENAL--TGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al--~~aDiVIi~a 120 (356)
|+|.|+|++|++||+.+..|++.|. +++.+|... -...+.+-....+ ..++... .-+.+.| ..-|.||..|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~---~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLDR---ALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEeccccH---HHHHHHHHhcCCCEEEECc
Confidence 6899999999999999999999998 999999865 1111111111111 0111110 1122222 4789999988
Q ss_pred CCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCccHHHHHHHHHHhCCCCCCCEEEechhh
Q 018433 121 GVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-----SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD 193 (356)
Q Consensus 121 g~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-----tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld 193 (356)
+...-.. +.-+.+...|+--...+.+.+.+.+.+-+|.-. .+|..+- + .+..-..|.+.+|-|.|.
T Consensus 76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~P--I-----~E~~~~~p~NPYG~sKlm 148 (329)
T COG1087 76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSP--I-----SETSPLAPINPYGRSKLM 148 (329)
T ss_pred cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcc--c-----CCCCCCCCCCcchhHHHH
Confidence 7532211 234678899999999999999999977655432 3554421 1 122234577889999888
Q ss_pred HHHHHHHHHHHhCCCCCCC-cccEEe
Q 018433 194 VVRANTFVAEVLGLDPRDV-DVPVVG 218 (356)
Q Consensus 194 ~~R~~~~la~~l~v~~~~v-~~~viG 218 (356)
..+.-+.+++..+....-+ ..-+.|
T Consensus 149 ~E~iL~d~~~a~~~~~v~LRYFN~aG 174 (329)
T COG1087 149 SEEILRDAAKANPFKVVILRYFNVAG 174 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccccc
Confidence 8888889988887554333 233445
No 116
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.58 E-value=0.001 Score=66.68 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=67.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----------------CCeEEEEeCCCChh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLE 107 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~ 107 (356)
.+||+|||. |.+|..+|..|+..|+ +++.+|+++..-.. +..... ...+.. +++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~-- 72 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT-- 72 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc--
Confidence 579999999 9999999999999987 99999998621111 221100 011221 223
Q ss_pred hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHH
Q 018433 108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPI 170 (356)
Q Consensus 108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~ 170 (356)
+++||+||++...|.+... ..++..+.+.++.|.++. ++.+||+- |.|....-.+
T Consensus 73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 3589999999877653321 122333445556666655 45555554 4677655444
No 117
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.57 E-value=0.0017 Score=62.92 Aligned_cols=155 Identities=13% Similarity=0.022 Sum_probs=89.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHh-cCC--CCCeEEEEeC-CC---ChhhhhCC--
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADIS-HMD--TGAVVRGFLG-QP---QLENALTG-- 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~-~~~--~~~~v~~~~~-t~---d~~~al~~-- 112 (356)
++|.|+||+|++|++++..|+..|. +|+++|++.. ......+. +.. ....+..+.+ -+ .+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999887 9999997641 11111111 000 0111222111 12 23445664
Q ss_pred CcEEEEcCCCCCCC-C-CcHHHHHHHHHHHHHHHHHHHHHhC-CC-cEEEEecC------CCCccHHHHHHHHHHhCCCC
Q 018433 113 MDLVIIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCC-PN-ATVNLISN------PVNSTVPIAAEVFKKAGTYD 182 (356)
Q Consensus 113 aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-p~-a~viv~tN------Pv~~~t~~~~~~~~~~~~~~ 182 (356)
.|+||.+|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|. +.+.. ..+...+.
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~-------~~E~~~~~ 151 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIP-------QNETTPFY 151 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCC-------CCCCCCCC
Confidence 59999999864321 1 1123444668778888999888765 22 35554432 11110 01112234
Q ss_pred CCCEEEechhhHHHHHHHHHHHhCCC
Q 018433 183 PKKLLGVTMLDVVRANTFVAEVLGLD 208 (356)
Q Consensus 183 ~~kviG~t~ld~~R~~~~la~~l~v~ 208 (356)
+...+|.+.+...++-..+++.+|++
T Consensus 152 p~~~Y~~sK~~~e~~~~~~~~~~~~~ 177 (343)
T TIGR01472 152 PRSPYAAAKLYAHWITVNYREAYGLF 177 (343)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCc
Confidence 55667777666666766677777765
No 118
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.55 E-value=0.00059 Score=65.72 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH---HHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVII 118 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~---dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi 118 (356)
+.+|||+|+|+ |.+|..+|..|...+. ++.+++++....... .+........+......++. ++...+|+||+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 78 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLV 78 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEE
Confidence 34589999999 9999999999998887 899999865211110 00000000011100011232 45788999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
+.-.. . ..+..+.+... .|++.++...|=.+..- .+.+. +|+++|++-
T Consensus 79 avK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g 127 (313)
T PRK06249 79 GLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGG 127 (313)
T ss_pred EecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEE
Confidence 85221 1 12333344433 37888888888877542 22333 677787665
No 119
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.55 E-value=0.00086 Score=69.35 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhc-----CCC--CCeEEEEeC----CCChhhh
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-----MDT--GAVVRGFLG----QPQLENA 109 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~-----~~~--~~~v~~~~~----t~d~~~a 109 (356)
....|.|+||+|++|..++..|+..|. +|++++++. +.....++.+ ... ...+..+.+ ..++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 345799999999999999999998887 899998876 2222222211 000 011222211 1345567
Q ss_pred hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+.++|+||+++|............+..|......+++.+.+..- ..||++|
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VS 207 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVT 207 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEc
Confidence 89999999998865332112223355677888888888876643 3555554
No 120
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.55 E-value=0.0017 Score=69.04 Aligned_cols=181 Identities=15% Similarity=0.022 Sum_probs=97.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh--CCCc
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMD 114 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al--~~aD 114 (356)
+-+++||.|+||+|++|++++..|+..+...+|+.+|..........+........++...+ -+| ....+ .++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 44578999999999999999999988754448999997431111111111101122333221 122 11222 6899
Q ss_pred EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHHHHH-HHHHHhCCCCCCCEEEec
Q 018433 115 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAA-EVFKKAGTYDPKKLLGVT 190 (356)
Q Consensus 115 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~~~~-~~~~~~~~~~~~kviG~t 190 (356)
+||.+|+...... ....++...|+.....+.+.+++.+.-..+|.+|.- +.-...--. .-..+...+.+...+|.+
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s 162 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT 162 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence 9999998643211 123456788999999999999887533456655431 000000000 000000112233456666
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433 191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 221 (356)
Q Consensus 191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg 221 (356)
.+...++-...++..+++..-++ ..++|.+.
T Consensus 163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ 194 (668)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence 55555555555566676654444 45667543
No 121
>PLN02583 cinnamoyl-CoA reductase
Probab=97.51 E-value=0.0021 Score=61.21 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-ch---hHHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP---GVTADISHMDTGAVVRGFL----GQPQLENALTGMDLV 116 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~---g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV 116 (356)
++|.|+||+|++|++++..|+..|. +|++++++. .. ....++... ...+..+. ...++.++++++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4799999999999999999999988 888887643 11 111222111 11222221 113456789999999
Q ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+..++.+........+.+..|+.....+.+.+.+..--..||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S 127 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS 127 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 876654322111234667899999999999988763123455544
No 122
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.51 E-value=0.001 Score=64.45 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC------CC--CCeEEEEeCCCChhhhhCCCc
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------DT--GAVVRGFLGQPQLENALTGMD 114 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~------~~--~~~v~~~~~t~d~~~al~~aD 114 (356)
..|||+|||+ |.+|+.++..|+..++ +|+++|+++.......-.+. .. ...+.. ++++.++++++|
T Consensus 3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD 76 (328)
T PRK14618 3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGAD 76 (328)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCC
Confidence 3689999999 9999999999998887 89999997521111111110 00 011222 356778889999
Q ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
+||++.-.. .++++.+. ..|+..++.++|..+
T Consensus 77 ~Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 77 FAVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA 108 (328)
T ss_pred EEEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence 999984211 02333332 336677887888654
No 123
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.50 E-value=0.0013 Score=57.42 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=65.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CChhhhhCCCcEEEEcCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi~ag~ 122 (356)
|+|+||+|++|+.++..|+..+. +|+++-+++.. ..+ ...++.+.+. +++.++++++|.||.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999996 99999887521 111 1233332221 2456789999999999875
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+.+ ....++.+.+.+++.... .++++|
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceeee
Confidence 543 167778888888876533 444443
No 124
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.49 E-value=0.00046 Score=64.65 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=67.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP 126 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~ 126 (356)
|.|+||+|++|++++..|+..+. +|+.++++...... +.. ..+..... .+..++++++|+||.+++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999998887 99999987611100 000 00111111 23357789999999999875432
Q ss_pred C----CcHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 018433 127 G----MTRDDLFNINAGIVRTLCEGIAKCCPNA 155 (356)
Q Consensus 127 g----~~r~~~~~~N~~i~~~i~~~i~~~~p~a 155 (356)
+ .....+...|+...+.+++.+++.....
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~ 104 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQKP 104 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCc
Confidence 2 1234566789999999999999876433
No 125
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.49 E-value=0.00042 Score=67.66 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=61.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---chhHHHHHh--cCC--C------CCeEEEEeCCCCh
Q 018433 46 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------GAVVRGFLGQPQL 106 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~------~~~el~L~D~~~---~~g~~~dl~--~~~--~------~~~v~~~~~t~d~ 106 (356)
||+|||+ |..|.++|..|..++ ...+|.|+.+++ -......++ |.. + +..++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 7999999 999999999999876 124999998844 122222332 211 1 112333 4688
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433 107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 161 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t 161 (356)
++++++||+||++. | ...++++++.+..+- ++..++.+|
T Consensus 77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 89999999999973 2 233555556665543 344555554
No 126
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.46 E-value=0.00048 Score=65.75 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=65.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~ 122 (356)
|||.|+||+|++|++++..|...+ +++.+|.... ....|+.+ ...+.++++ ++|+||.+|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence 689999999999999999998776 4677776421 00001111 112344555 58999999875
Q ss_pred CCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 123 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 123 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.... ..........|+.....+++.+++.. .+++.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 4211 12233445789999999999998865 3555554
No 127
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.46 E-value=0.00029 Score=66.09 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
..++||+|+||+|||||+++..|+..+. +|+.+|..- .+....+.|....+..+.+. ..--..-++.+|-|+.+|.
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAa 100 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAA 100 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhcc
Confidence 4568999999999999999999999986 999999754 22223344443333333321 1112346899999999876
Q ss_pred CCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 122 VPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 122 ~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
....++ ..-.+.+..|.-.........++.+ +.++.+|
T Consensus 101 pasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS 140 (350)
T KOG1429|consen 101 PASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS 140 (350)
T ss_pred CCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence 432222 2222333444433334333333332 5555543
No 128
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.45 E-value=0.0015 Score=66.02 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh------------HHHHH---hcCCCCCeEEEEeC-
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG------------VTADI---SHMDTGAVVRGFLG- 102 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g------------~~~dl---~~~~~~~~v~~~~~- 102 (356)
.+.+||.|+||+|++|++++..|+..|. +|+++|... . .. ....+ .+.. ...+..+.+
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~D 121 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGD 121 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECC
Confidence 3457999999999999999999999887 899998532 0 00 00001 0000 011222211
Q ss_pred ---CCChhhhhC--CCcEEEEcCCCCCCC-CC-c---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec------CCCCc
Q 018433 103 ---QPQLENALT--GMDLVIIPAGVPRKP-GM-T---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS------NPVNS 166 (356)
Q Consensus 103 ---t~d~~~al~--~aDiVIi~ag~~~~~-g~-~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t------NPv~~ 166 (356)
..++.++++ ++|+||.+|+....+ .. + ....+..|+.....+.+.+++++....++.+| +|...
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~ 201 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNID 201 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCC
Confidence 123344555 489999998653211 11 1 12335689999999999999887655555443 21110
Q ss_pred cH--HH-HHHHHH-Hh--CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433 167 TV--PI-AAEVFK-KA--GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 221 (356)
Q Consensus 167 ~t--~~-~~~~~~-~~--~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg 221 (356)
+. ++ ..+... .. ....+...+|.+.+....+....++.+|++...++ +.++|.+.
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 00 00 000000 00 01234567888876666666777788888776664 56778653
No 129
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=97.43 E-value=0.0013 Score=63.57 Aligned_cols=164 Identities=15% Similarity=0.048 Sum_probs=89.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhc-C-CCCCeEEEEe----CCCChhhhh
Q 018433 40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M-DTGAVVRGFL----GQPQLENAL 110 (356)
Q Consensus 40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~-~-~~~~~v~~~~----~t~d~~~al 110 (356)
|..+.++|.|+||+|++|++++..|+..|. +|+++|.+.. ......+.. . .....+.... ...++.+++
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL 79 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence 445567999999999999999999999887 8999987541 111111110 0 0011122211 112334456
Q ss_pred CC--CcEEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCC----cEEEEecCC-CCccHHHHHHHHHHhCCC
Q 018433 111 TG--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN----ATVNLISNP-VNSTVPIAAEVFKKAGTY 181 (356)
Q Consensus 111 ~~--aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~----a~viv~tNP-v~~~t~~~~~~~~~~~~~ 181 (356)
++ .|+||.+|+...... ......+..|+.....+++.+.+.... ..++.+|.- +.-... ....+...+
T Consensus 80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~---~~~~E~~~~ 156 (340)
T PLN02653 80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTP---PPQSETTPF 156 (340)
T ss_pred HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCC---CCCCCCCCC
Confidence 54 599999998643211 122334567888889999998887643 244444310 000000 000011112
Q ss_pred CCCCEEEechhhHHHHHHHHHHHhCCC
Q 018433 182 DPKKLLGVTMLDVVRANTFVAEVLGLD 208 (356)
Q Consensus 182 ~~~kviG~t~ld~~R~~~~la~~l~v~ 208 (356)
.+...+|.+......+-..+++.+++.
T Consensus 157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~ 183 (340)
T PLN02653 157 HPRSPYAVAKVAAHWYTVNYREAYGLF 183 (340)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCe
Confidence 344556666555555555566666653
No 130
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.35 E-value=0.0013 Score=60.73 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=52.1
Q ss_pred CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 018433 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK 340 (356)
Q Consensus 265 g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa 340 (356)
++..|+ . .++++|.+|.+ .++.++ .++|.+ |+|.++++||+|+++|+.++.. ++|++..++++....
T Consensus 134 ~~~~~a--~---~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 134 GSGEYA--E---AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK 204 (232)
T ss_dssp TTSCHH--H---HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred cccchH--H---HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence 455555 3 44555577754 366665 678986 8899999999999999999777 699999999888766
Q ss_pred HHHHHHHHHhh
Q 018433 341 KELAGSIQKGI 351 (356)
Q Consensus 341 ~~l~~~~~~~~ 351 (356)
..-+-.++.++
T Consensus 205 ~~e~L~veAa~ 215 (232)
T PF11975_consen 205 AYERLTVEAAL 215 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555443
No 131
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.30 E-value=0.0019 Score=61.27 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=45.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||. |.+|..++..|...+. +|.++|.++ ....+.+ .. .+.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~---~g---~~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIE---RG---LVDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH---CC---Cccc--ccCCH-hHhcCCCEEEEcC
Confidence 68999998 9999999999998887 899999875 2111211 11 1111 12444 5689999999985
No 132
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.30 E-value=0.0016 Score=62.00 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
.+..||+|+|| |.+|.++++.|+..+. .+|.++|++. +++.+.++.+.. +..... ...+++++++++|+||.+
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDLAAALAAADGLVHA 199 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccchHhhhCCCCEEEEC
Confidence 34569999999 9999999999998774 4899999986 455555664432 122222 123455678999999997
Q ss_pred --CCC
Q 018433 120 --AGV 122 (356)
Q Consensus 120 --ag~ 122 (356)
+|+
T Consensus 200 Tp~Gm 204 (284)
T PRK12549 200 TPTGM 204 (284)
T ss_pred CcCCC
Confidence 454
No 133
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.30 E-value=0.0016 Score=63.44 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
.+.++|.|+||+|++|+.++..|....-+.+|++++++. +...+.++.+. .+ .++++++.++|+||.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~ 222 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWV 222 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEEC
Confidence 345689999999999999999997643345899999865 22222222211 11 2467899999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 167 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~ 167 (356)
++.+...-.+..++ .+..+++-++.|=|+-
T Consensus 223 ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 223 ASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred CcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence 88764211222111 2567888889998875
No 134
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0025 Score=62.99 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
+|||.|||| |.||+.+|..|++.+- .+|.+-|+... ...+.+..+... ...+... ....+.+++++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence 479999999 9999999999999875 59999999751 112222221111 0112221 12345688899999999975
Q ss_pred C
Q 018433 122 V 122 (356)
Q Consensus 122 ~ 122 (356)
.
T Consensus 78 ~ 78 (389)
T COG1748 78 P 78 (389)
T ss_pred c
Confidence 3
No 135
>PLN02253 xanthoxin dehydrogenase
Probab=97.28 E-value=0.0058 Score=57.21 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------ 111 (356)
.+++.|+||+|.+|.+++..|+..|. +|+++|.+. ......++.. ...+..+. .-+| .+++++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999998887 899999865 2222223321 11222211 1122 222333
Q ss_pred -CCcEEEEcCCCCCCC-C----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 112 -GMDLVIIPAGVPRKP-G----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 112 -~aDiVIi~ag~~~~~-g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
..|++|..+|..... + .+ -...+..|+.....+.+.+... ...+.+++++......
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------ 160 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI------------ 160 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc------------
Confidence 689999999864321 1 11 2344566665554444444322 2346666665533211
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhC
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLG 206 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~ 206 (356)
+.+..-.+|.+......+-+.++..++
T Consensus 161 ~~~~~~~Y~~sK~a~~~~~~~la~e~~ 187 (280)
T PLN02253 161 GGLGPHAYTGSKHAVLGLTRSVAAELG 187 (280)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 122223466655444566677777775
No 136
>PRK07680 late competence protein ComER; Validated
Probab=97.23 E-value=0.0028 Score=59.80 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=62.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
|||+|||+ |.+|..++..|...+. ..++.++|++... ...+.+.. ..+.. +.+..+++.++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~---~~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHV---AKTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEE---ECCHHHHHHhCCEEEEecC-
Confidence 58999998 9999999999988773 2479999987521 12222211 12332 2355677899999999851
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 165 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~ 165 (356)
| ..+.++.+.+..+- ++.+|+.++|++.
T Consensus 72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 11334444554443 5678888888774
No 137
>PLN02240 UDP-glucose 4-epimerase
Probab=97.22 E-value=0.0064 Score=58.85 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEe----CCCChhhhhC--CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFL----GQPQLENALT--GM 113 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~----~t~d~~~al~--~a 113 (356)
.+||.|+||+|++|++++..|+..+. +|+++|... .......+.+.. ....++... ...++.++++ ++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 46999999999999999999998886 899998643 111111111110 011122211 1123333443 68
Q ss_pred cEEEEcCCCCCC-CC-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 114 DLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 114 DiVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
|+||.+++.... .. ......+..|+.....+++.+.+.... .++.+|
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 131 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS 131 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence 999999886421 11 234567789999999999988775433 344444
No 138
>PRK05865 hypothetical protein; Provisional
Probab=97.21 E-value=0.0045 Score=67.19 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=70.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
|||.|+||+|++|++++..|+..|. +|+.+|.+.... +.. . ...+.. .....++.++++++|+||.+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 6899999999999999999998887 899999764110 110 0 011111 111234556789999999998753
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
. + ....|+.....+++.+++... ..++++|.+.
T Consensus 73 ~-~------~~~vNv~GT~nLLeAa~~~gv-kr~V~iSS~~ 105 (854)
T PRK05865 73 G-R------NDHINIDGTANVLKAMAETGT-GRIVFTSSGH 105 (854)
T ss_pred c-c------hHHHHHHHHHHHHHHHHHcCC-CeEEEECCcH
Confidence 2 1 346788888889888887653 3566677664
No 139
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.006 Score=56.39 Aligned_cols=117 Identities=22% Similarity=0.302 Sum_probs=67.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCC-CCeEEEEeCCCChhhhhC--------CC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALT--------GM 113 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~--------~a 113 (356)
+++.|+||+|.+|..++..|+..|. +|+++|.+.. .....++..... ...... ....+..++++ ..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNAWTGALDV-TDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCceEEEEecC-CCHHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999999887 8999998752 212222221110 001111 01112222332 45
Q ss_pred cEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCCC
Q 018433 114 DLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNPV 164 (356)
Q Consensus 114 DiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNPv 164 (356)
|+||.++|...... . +-...+..|+.....+.+.+.. ..+.+.+++++...
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~ 138 (260)
T PRK08267 79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSAS 138 (260)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence 99999998753211 1 1234566777766666555543 23456666665543
No 140
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.20 E-value=0.0028 Score=60.30 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=65.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC-hhhhh-----CCCcEEEEcC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA 120 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~~al-----~~aDiVIi~a 120 (356)
|.|+||+|++|++++..|+..|. ..+.++|..........+.+... .+... ..+ .++++ .++|+||.+|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998875 25667787541110011111110 00000 011 12222 3799999998
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+.+.............|+....++.+.+.+..- .+|..|
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 754333333445678899999999999887643 455543
No 141
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0065 Score=64.10 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=66.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----------CChhhhhCCCc
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----------PQLENALTGMD 114 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----------~d~~~al~~aD 114 (356)
|||.|+||+|++|++++..|+......+|+.++++.......++........++.+.+. .++ +.++++|
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~~D 79 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGDID 79 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcCCC
Confidence 68999999999999999999852223389999986522221122111000122222110 112 2348999
Q ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018433 115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 154 (356)
Q Consensus 115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~ 154 (356)
+||.+|+... ......+....|+.....+++.+.+....
T Consensus 80 ~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 118 (657)
T PRK07201 80 HVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAA 118 (657)
T ss_pred EEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 9999987532 22334456678999999999988876433
No 142
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.02 Score=52.25 Aligned_cols=116 Identities=19% Similarity=0.040 Sum_probs=68.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---Chhhhh----CCCc
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENAL----TGMD 114 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al----~~aD 114 (356)
++|.|+||+|.+|..++..|+..|. +|+++|++. ......++.... ...+..+.. -+ +.++.+ +..|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 5899999999999999999998887 899999876 222233333221 122322211 11 222222 2459
Q ss_pred EEEEcCCCCCC---CCCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433 115 LVIIPAGVPRK---PGMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 163 (356)
Q Consensus 115 iVIi~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP 163 (356)
+||..+|.... .+.+. .+.+..|......+.+.+..+ ...+.++++|..
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 99998875321 12222 234566776666666665543 234667766643
No 143
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.17 E-value=0.0021 Score=60.25 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=66.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC--cEEEEcCCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP 123 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~ 123 (356)
||.|+||+|++|++++..|...+. ++++++... .|+.+ ..++.++++++ |+||.+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999998887 899888741 12211 12345566665 9999998864
Q ss_pred CCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 124 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 124 ~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.... .........|+.....+++.+.+... .++++|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 23445667889999999999877643 455554
No 144
>PRK08643 acetoin reductase; Validated
Probab=97.16 E-value=0.02 Score=52.67 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=66.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------C
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~ 111 (356)
+++.|+||+|.+|.+++..|+..|. +++++|.+. ......++.+.. ..+..+. .-+|. .+++ .
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999998887 899999876 222333343321 1222111 11221 1222 3
Q ss_pred CCcEEEEcCCCCC-CCC--Cc---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 018433 112 GMDLVIIPAGVPR-KPG--MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 112 ~aDiVIi~ag~~~-~~g--~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNPv 164 (356)
+.|+||.++|... .+- .+ -...+..|+.... .+.+.+.+..+++.++++|...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~ 141 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA 141 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence 6899999998642 111 11 1233455655433 3334444334456777776543
No 145
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.14 E-value=0.0033 Score=60.37 Aligned_cols=67 Identities=27% Similarity=0.261 Sum_probs=47.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+||+|||+ |.+|..++..|...+...+|.++|+++ ....+. ... ..... ..+.++++++||+||++.
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~---~~g--~~~~~---~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR---ELG--LGDRV---TTSAAEAVKGADLVILCV 74 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH---hCC--CCcee---cCCHHHHhcCCCEEEECC
Confidence 58999998 999999999999887656899999875 111111 111 11111 234567889999999986
No 146
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.14 E-value=0.018 Score=53.03 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------C
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~ 111 (356)
.+|.|+||+|.+|.+++..|+..+. +|+++|.+. ......++........+..+. ..+|. ..++ .
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999887 899999875 222222332211101222211 11221 1222 3
Q ss_pred CCcEEEEcCCCCCCC---CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433 112 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
..|+||.++|.+... .... ...+..|+.. .+.+.+.+.+..+++.++++|...
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS 143 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence 579999999865321 1222 2233455544 445555555444456777776643
No 147
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.12 E-value=0.0091 Score=56.16 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCChhh------
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLEN------ 108 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~------ 108 (356)
.++...+.|+||++-+|..+|..|+.+|. .|+|+.+++ +...+.++.+.. ...+..+.. +++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence 45567899999999999999999999999 999999987 667777777643 222322211 122211
Q ss_pred -hhCCCcEEEEcCCCCCCC-----C-CcHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433 109 -ALTGMDLVIIPAGVPRKP-----G-MTRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 163 (356)
Q Consensus 109 -al~~aDiVIi~ag~~~~~-----g-~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP 163 (356)
..-..|+.|..||...-. . .+-.+++.-|+-.+..+...+-..- -.+.|||++.-
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ 144 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSA 144 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech
Confidence 112689999999975321 1 2234667788766666655554332 35677777543
No 148
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.11 E-value=0.0035 Score=63.35 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=47.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+||||+|.+|..++..|...+. +|.++|.+.... .++.... . +.. +++..+++.+||+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~-g--v~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL-G--VEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc-C--Cee---ccCHHHHhccCCEEEEec
Confidence 6999998559999999999998887 899999875211 1111111 1 121 346678899999999985
No 149
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.11 E-value=0.0027 Score=59.45 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
+|||+|||+ |.+|..++..|...+. ..++.++|++... ...+.+.. .+.. +++..+.+.++|+||++.-
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 479999999 9999999999987762 2478999987511 11222210 1122 2355677899999999841
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
-..+.++.+.+..+. +..|+.++|-+.
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 112344445554443 456666777653
No 150
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.11 E-value=0.0035 Score=61.40 Aligned_cols=109 Identities=21% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI 117 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVI 117 (356)
++.++.|+||+|++|.+++..|...+...||.++|.... ...-.+.... ....++... ...+...|+.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 455899999999999999999999886669999999762 1111111111 112222221 124567899999 777
Q ss_pred EcCCCC-CCCCC-cHHHHHHHHHHHHHHHHHHHHHhCC
Q 018433 118 IPAGVP-RKPGM-TRDDLFNINAGIVRTLCEGIAKCCP 153 (356)
Q Consensus 118 i~ag~~-~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p 153 (356)
+.+..+ ..... .|......|+...+.+.+.+.+.+=
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v 118 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGV 118 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCC
Confidence 754332 12223 4667778999999999999998763
No 151
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.013 Score=53.98 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.+++.|+||+|.+|+.++..|+..|. +|++++++.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456999999999999999999999887 899999875
No 152
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.11 E-value=0.0045 Score=57.01 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------- 110 (356)
.+++.|+||+|.+|++++..|+..|. +|++++.++ ......++.+.. ..+..+.. -+|. .+++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999888 899999877 223333444322 22222211 1222 1222
Q ss_pred CCCcEEEEcCCCCCCC-----C-CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP-----G-MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~-----g-~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
...|+||.++|..... . ......+..|... .+.+.+.+.+.++.+.|+++|.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss 144 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS 144 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence 3489999999864211 1 1123344566665 5556666633344456666653
No 153
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.10 E-value=0.0028 Score=59.30 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=46.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||++||. |.+|+.++..|+..++ ..+|+.+ |++... ...+.+. . +.. ..+..+++++||+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~--g--~~~---~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL--G--VKT---AASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc--C--CEE---eCChHHHHhcCCEEEEEE
Confidence 79999998 9999999999998774 4578888 765421 2222221 1 222 134567789999999985
No 154
>PRK05717 oxidoreductase; Validated
Probab=97.10 E-value=0.0045 Score=57.13 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=81.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTGM 113 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~~a 113 (356)
++|.|+||+|.+|++++..|+..+. +++++|.+....... ..+.. ..+..+. .-+|. .++ +...
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4799999999999999999998886 899999865211111 11111 1111111 01221 111 1347
Q ss_pred cEEEEcCCCCCCCC-----Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433 114 DLVIIPAGVPRKPG-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183 (356)
Q Consensus 114 DiVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~ 183 (356)
|++|..+|...... .+ -...+..|......+.+.+..+- ..+.+|++|.-.... +.+.
T Consensus 86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~------------~~~~ 153 (255)
T PRK05717 86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ------------SEPD 153 (255)
T ss_pred CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC------------CCCC
Confidence 99999998653211 12 23456677777777777765432 345677766433211 1222
Q ss_pred CCEEEechhhHHHHHHHHHHHhC
Q 018433 184 KKLLGVTMLDVVRANTFVAEVLG 206 (356)
Q Consensus 184 ~kviG~t~ld~~R~~~~la~~l~ 206 (356)
.-.+|.+......+-+.+++.++
T Consensus 154 ~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 154 TEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CcchHHHHHHHHHHHHHHHHHhc
Confidence 33456644333456677777775
No 155
>PRK12320 hypothetical protein; Provisional
Probab=97.09 E-value=0.0021 Score=68.18 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=65.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|||.|+||+|++|++++..|+..++ +|+.+|..... ..+... ..+..-.....+.+++.++|+||++++...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 6999999999999999999998887 99999975411 111000 011110001124456789999999987521
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.. ....|+....++++.+++... ++|.+|
T Consensus 73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 11 124688888888888887653 555554
No 156
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.09 E-value=0.0013 Score=54.29 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=47.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHh-c-CCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-H-MDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~-~-~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
||+|+||+|.+|..++..|...+.+.-+.+++.....|..+.-. . ......+.... .+. +.+.++|+||++.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dvvf~a~~ 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADP-EELSDVDVVFLALP 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSG-HHHTTESEEEE-SC
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cch-hHhhcCCEEEecCc
Confidence 79999999999999999999877676677777765233222111 1 11122333321 343 66899999999853
No 157
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.09 E-value=0.0026 Score=57.50 Aligned_cols=168 Identities=17% Similarity=0.122 Sum_probs=93.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC--cEEEEcCCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP 123 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~ 123 (356)
|.|+||+|++|+.++..|+.++. +++-+.... ............. ...... ...++.+++++. |.||.+++.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~-~~~dl~-~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVEF-VIGDLT-DKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEEE-EESETT-SHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEEE-EEeecc-ccccccccccccCceEEEEeeccc
Confidence 78999999999999999999988 655555444 2222211111000 001100 113455667777 9999999865
Q ss_pred C--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHH
Q 018433 124 R--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 201 (356)
Q Consensus 124 ~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~l 201 (356)
. .....-.+.+..|+...+.+.+.+.+... ..++..+. ..+-..--...+.+...+.+...+|.+.....++-..+
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~ 154 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDY 154 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 3 01134567788999999999999998876 45555543 21110000000000000112223455444444555666
Q ss_pred HHHhCCCCCCCc-ccEEecc
Q 018433 202 AEVLGLDPRDVD-VPVVGGH 220 (356)
Q Consensus 202 a~~l~v~~~~v~-~~viG~h 220 (356)
++..+++...++ ..++|.+
T Consensus 155 ~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 155 AKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHTSEEEEEEESEEESTT
T ss_pred cccccccccccccccccccc
Confidence 666677766664 4566655
No 158
>PLN02686 cinnamoyl-CoA reductase
Probab=97.09 E-value=0.003 Score=62.18 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC---C-CCCeEEEEe----CCCChhhhhCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM---D-TGAVVRGFL----GQPQLENALTG 112 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~---~-~~~~v~~~~----~t~d~~~al~~ 112 (356)
.+.++|.|+||+|++|++++..|+..|. +|+++..+. ......++... . ....+..+. ...++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 4567999999999999999999999987 887765543 11111122110 0 001222211 11234567889
Q ss_pred CcEEEEcCCCCCCCCC--cHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433 113 MDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 162 (356)
Q Consensus 113 aDiVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 162 (356)
+|.||.+++.....+. ....+...|+....++.+.+.+.. .. .+|.+|.
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS 180 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS 180 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence 9999998875322221 123445678888999999988752 33 4444443
No 159
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.08 E-value=0.0077 Score=55.55 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=80.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE-EeCCCChhhhh-------CCCc
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMD 114 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aD 114 (356)
.++.|+||+|.+|..++..|+..|. +++++|.+.. .....++.... ..+.. .....+.++++ ...|
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA--IAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce--EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999987 8999998762 22222222110 00110 00111222222 3689
Q ss_pred EEEEcCCCCCC-C--C---CcHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433 115 LVIIPAGVPRK-P--G---MTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 184 (356)
Q Consensus 115 iVIi~ag~~~~-~--g---~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~ 184 (356)
++|..+|.... + . ..-...+..|+.....+.+.+..+ .+.+.|+++|..... .+.++.
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~ 150 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR------------RGEALV 150 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC------------CCCCCC
Confidence 99999885421 1 1 112344567776666666665433 234667776653321 123333
Q ss_pred CEEEechhhHHHHHHHHHHHh
Q 018433 185 KLLGVTMLDVVRANTFVAEVL 205 (356)
Q Consensus 185 kviG~t~ld~~R~~~~la~~l 205 (356)
-.++.+......+-+.++..+
T Consensus 151 ~~Y~~sK~a~~~~~~~la~e~ 171 (257)
T PRK07067 151 SHYCATKAAVISYTQSAALAL 171 (257)
T ss_pred chhhhhHHHHHHHHHHHHHHh
Confidence 445554433334556666665
No 160
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.08 E-value=0.0057 Score=55.23 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=30.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 79 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~ 79 (356)
.||+|+|+ |.+|+.++..|+..|. .+|+|+|.+
T Consensus 22 ~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 49999999 9999999999999886 489999998
No 161
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.08 E-value=0.021 Score=52.06 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
.++|.|+||+|.+|..++..|+..|. +|++++++. ......++.+ ...+..+.. -.| ...++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999998887 899999976 2222233332 112222211 112 22222
Q ss_pred CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
...|+||..+|...... .+ -.+.+..|......+.+.+..+. ....++++|.
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 141 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVAS 141 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 35799999988632111 11 12345556654444444444332 2345555544
No 162
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.08 E-value=0.0064 Score=60.83 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=71.0
Q ss_pred ccCCCchhhhhhhhh-hhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC
Q 018433 17 HLYPPNLQMEENSCL-RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA 95 (356)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~ 95 (356)
|++|.+-.|-.+.-| -+..-++- ..+.++|.|+||+|.+|.+++..|+..|. +++++|.+... ....+.+.....
T Consensus 151 ~~~~~~~~~~~~~~~~d~~~~ta~-sl~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v 226 (406)
T PRK07424 151 HFDNQNAYYCGTFTLVDKLMGTAL-SLKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPV 226 (406)
T ss_pred EeccccceeeeeEEEeehhcCccc-CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCe
Confidence 667776666544322 22222222 23456899999999999999999998887 88999986511 111121111111
Q ss_pred -eEEE-EeCCCChhhhhCCCcEEEEcCCCCCCCCCcH---HHHHHHHHHHHHHHHHHH
Q 018433 96 -VVRG-FLGQPQLENALTGMDLVIIPAGVPRKPGMTR---DDLFNINAGIVRTLCEGI 148 (356)
Q Consensus 96 -~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r---~~~~~~N~~i~~~i~~~i 148 (356)
.+.. ....++..+.+.+.|++|..+|.......+. .+.+..|......+.+.+
T Consensus 227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~ 284 (406)
T PRK07424 227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELF 284 (406)
T ss_pred EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0011223345788999999988643222222 234556665544444443
No 163
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.08 E-value=0.012 Score=54.49 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=64.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------hC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l~ 111 (356)
|+|.|+||+|.+|..++..|+..|. +|++.|+++ +.....++.+.. .+..+. .-+| .+++ +.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999987 899999876 222333343211 111111 1122 2222 24
Q ss_pred CCcEEEEcCCCCC-CC----CCcHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPR-KP----GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~-~~----g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP 163 (356)
..|++|..+|... .+ ..+..+ .+..|. ...+...+.+.+....+.|+++|.-
T Consensus 76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~ 139 (259)
T PRK08340 76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV 139 (259)
T ss_pred CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 6899999998642 11 112222 222332 2234445554433345677777643
No 164
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.05 E-value=0.0044 Score=59.31 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|||+|||. |.+|+.++..|...++ +|.++|++... +..+..... .......++.+.+.++|+||++. |.
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p~ 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--PH 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--Cc
Confidence 68999999 9999999999998887 99999987621 222222111 11111123334567899999974 10
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 164 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv 164 (356)
+ .+.++++.+.... |+.+||..||..
T Consensus 70 --~------------~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 --G------------IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred --h------------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 0 2344444555444 566777777654
No 165
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.04 E-value=0.0085 Score=63.88 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=65.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-----
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----- 111 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~----- 111 (356)
..++|.|+||+|.+|++++..|+..|. +|+++|++. +.....++........+..+. .-+| .++++.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999887 999999876 222223333111011111111 1122 223333
Q ss_pred --CCcEEEEcCCCCCC-C--CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 018433 112 --GMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 112 --~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN 162 (356)
+.|+||..+|.... + ..+. ...+..|+. ..+...+.+.+....+.|+++|.
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS 553 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS 553 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999986431 1 1111 112233333 33455566655444555666553
No 166
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.013 Score=53.10 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=65.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------C
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~ 111 (356)
++|.|+||+|.+|+.++..|+..+. +|++++++. +.....++... ..+..+.. -+| +.+++ .
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999998877 899999876 22222333321 11222111 122 22222 3
Q ss_pred CCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP 163 (356)
..|+||..+|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|..
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 789999998754321 1122 233555665555555554432 234566666654
No 167
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.03 E-value=0.00089 Score=56.09 Aligned_cols=102 Identities=24% Similarity=0.243 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..+||+|||+ |.||.+++..|...++ +|.-+-... ...+..+.+.. ..... .++.+.+++||++|++...
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavpD 78 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVPD 78 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S-C
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEech
Confidence 4689999999 9999999999999887 666654432 22223333321 12221 2345778999999998521
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEec--CCCCccHHH
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLIS--NPVNSTVPI 170 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~-p~a~viv~t--NPv~~~t~~ 170 (356)
| .+.++++.|..+ . |+.+|+=.| -+++++.++
T Consensus 79 ---------d-------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 79 ---------D-------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp ---------C-------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ---------H-------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 1 266788888876 2 444444332 667777653
No 168
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.03 E-value=0.0068 Score=55.73 Aligned_cols=112 Identities=11% Similarity=0.127 Sum_probs=64.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCC---hhhh-------hC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~ 111 (356)
|+|.|+||+|.+|..++..|+..|. +|+++|++.. .....++. ..+..+.. -+| .+++ +.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 73 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR 73 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999998887 8999998752 11111111 11111110 112 2222 24
Q ss_pred CCcEEEEcCCCCC--CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP 163 (356)
+.|+||..+|... .+ ..+. ...+..|......+.+.+.++. ..+.++++|..
T Consensus 74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 135 (248)
T PRK10538 74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGST 135 (248)
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 7999999988632 11 1222 2345566665444444444322 23567766654
No 169
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.03 E-value=0.0095 Score=54.87 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
.++|.|+||+|.+|..++..|+..|. +|++.|.++ ......++.+.. ..+..+.. -+| ..+++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999998887 899999876 222222333221 12222111 112 22222
Q ss_pred CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP 163 (356)
...|+||..+|.... + ..+ -...+..|+.....+.+.+.++. ..+.++++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 357999999886421 1 111 23445677766666666665542 34567777654
No 170
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.01 E-value=0.0055 Score=58.08 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=66.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh----hCCCcEEEEcCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV 122 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a----l~~aDiVIi~ag~ 122 (356)
|.|+||+|++|++++..|...+.. +++++|..........+........+.. ...++.. +.++|+||.+|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence 579999999999999999988742 6888886542111111111000011111 1112222 2489999999986
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+.....+.......|+.....+.+.+.+... .++.+|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4322233455678899999999999887653 355554
No 171
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.00 E-value=0.0078 Score=55.52 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+.+||+|||+ |.+|.+++..++..+. ..+++.++.+.. ....++.+.. .+.. ++|+++.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence 4579999999 9999999998887652 345777876421 1122232211 1222 246678889999999984
No 172
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.99 E-value=0.0037 Score=59.48 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=46.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||. |.+|..++..|+..+. +|.++|++.... ..+.... +.. .+++++++++||+||++.
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 68999999 9999999999998887 899999875211 1122111 111 245678889999999985
No 173
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.99 E-value=0.0079 Score=59.80 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHHHHhcCCCCCe-EEE-EeCCCChhhhhC----C
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAV-VRG-FLGQPQLENALT----G 112 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g--~~~dl~~~~~~~~-v~~-~~~t~d~~~al~----~ 112 (356)
+.+||.|+||+|++|++++..|+..+. +|++++++. ... ...++........ +.. .....++.++++ +
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 346999999999999999999998887 899999865 111 1111111100111 111 111123445566 5
Q ss_pred CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+|+||.+++.+.. + ..+.+..|......+.+.+++..-. .++++|
T Consensus 137 ~D~Vi~~aa~~~~-~--~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS 181 (390)
T PLN02657 137 VDVVVSCLASRTG-G--VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS 181 (390)
T ss_pred CcEEEECCccCCC-C--CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9999997764321 1 1133456777788888888776533 344444
No 174
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.98 E-value=0.0032 Score=59.89 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=46.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
||+|||. |.+|+.++..|+..++ +|+++|++.. ....+.+.. . .. .++..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~--~~~~~~~~g--~--~~---~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPE--VADELLAAG--A--VT---AETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHCC--C--cc---cCCHHHHHhcCCEEEEec
Confidence 6999999 9999999999998887 9999998751 112222221 1 11 235668899999999985
No 175
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.97 E-value=0.0042 Score=52.97 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
.+.++|+|+|+ |.+|..++..|...+ ..++.++|.+. ....+.++... ..... ..|..+.++++|+||.+
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINT 88 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeC
Confidence 44679999999 999999999998876 45899999876 22223222211 00111 13455668999999998
Q ss_pred CCCC
Q 018433 120 AGVP 123 (356)
Q Consensus 120 ag~~ 123 (356)
...+
T Consensus 89 ~~~~ 92 (155)
T cd01065 89 TPVG 92 (155)
T ss_pred cCCC
Confidence 7543
No 176
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.017 Score=53.13 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------ 111 (356)
.++|.|+||+|.+|..++..|+..|. +|++++++. ......++.... ..+..+.. -+| ..++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998886 899999876 222333343321 12222211 122 222333
Q ss_pred -CCcEEEEcCCCCCCC----CCcH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 112 -GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 112 -~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
..|+||..+|..... ..+. ...+..|+.....+.+ .+.+. ..+.++++|......
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~~~~~------------ 149 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGLG------------ 149 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhcc------------
Confidence 459999998864221 1222 2334566655544433 33322 345666665533211
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG 218 (356)
+.+..-.++.+.-....+-+.++..+ .+..+++..+.
T Consensus 150 ~~~~~~~Y~~sKaa~~~~~~~la~e~--~~~~i~v~~i~ 186 (253)
T PRK06172 150 AAPKMSIYAASKHAVIGLTKSAAIEY--AKKGIRVNAVC 186 (253)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh--cccCeEEEEEE
Confidence 22222234443323334556666666 34556555443
No 177
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.016 Score=52.83 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC-----
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QP---QLENALT----- 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~----- 111 (356)
..+|.|+||+|.+|+.++..|+..|. ++++++.+. ......++.... ..+..+.. -+ +++++++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999987 788877654 122222333221 22222211 11 2223333
Q ss_pred --CCcEEEEcCCCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 018433 112 --GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 162 (356)
Q Consensus 112 --~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tN 162 (356)
..|+||..+|..... .+.-...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 689999999864211 1112334566766666666555443 24567777754
No 178
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.94 E-value=0.0084 Score=56.75 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..|||+|||+ |.+|.+++..|+..+ ...+|+.+|++. .....++.... .++. +.+..+++++||+||++.
T Consensus 2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~-~~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSN-ETRLQELHQKY---GVKG---THNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCC-HHHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence 4589999999 999999999998876 235889998754 11222332211 1222 235567789999999985
No 179
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.94 E-value=0.0056 Score=59.18 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEEeCCCc--h--------hH--HHH----HhcCC---------CCCeEEEEeCCCChhhhh
Q 018433 56 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----ISHMD---------TGAVVRGFLGQPQLENAL 110 (356)
Q Consensus 56 vG~~~a~~l~~~~~~~el~L~D~~~~--~--------g~--~~d----l~~~~---------~~~~v~~~~~t~d~~~al 110 (356)
+|+.+|..++..|+ +|+|+|+++. . +. ..+ +.... ...+++.. .+.|+++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVV-ARDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEee-cCcchHHHh
Confidence 47889999999998 9999999871 1 11 001 11100 01235442 123467889
Q ss_pred CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
++||+||.+. .++..+-+++...+.+.+ |++++ .||.......-++ .... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la----~~~~-~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQ----RHVA-HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHH----hhcC-CcccEEEE
Confidence 9999999984 567778888888899988 56644 7888776653332 2222 25678776
Q ss_pred c
Q 018433 190 T 190 (356)
Q Consensus 190 t 190 (356)
.
T Consensus 137 H 137 (314)
T PRK08269 137 H 137 (314)
T ss_pred e
Confidence 4
No 180
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.045 Score=51.11 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=63.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChhh---------hhCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLEN---------ALTG 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~~---------al~~ 112 (356)
..+.|+||+|.+|++++..|+..|. .|++++++. ......++.+......+..+. .-+|.++ .+..
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4689999999999999999998887 899998865 222222222211111222221 1123211 1235
Q ss_pred CcEEEEcCCCCCC--CC-Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433 113 MDLVIIPAGVPRK--PG-MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 162 (356)
Q Consensus 113 aDiVIi~ag~~~~--~g-~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN 162 (356)
.|+||.++|.... .. .+ -.+.+..|......+.+. +++.. .+.++++|.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS 140 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK-SGKIINISS 140 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence 7999999886431 11 11 123355666655555555 44433 344555543
No 181
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.032 Score=51.73 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hh-------
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------- 109 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a------- 109 (356)
+.+++.|+||+|.+|.+++..|+..|. +|+++|++. ......++.... ..+..+. .-++.+ ++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998887 999999875 223333333221 1222211 112321 11
Q ss_pred hCCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 110 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
+...|+||..+|..... ..+ ....+..|......+.+... +..+.+.++++|.-....
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 152 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------------ 152 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC------------
Confidence 23689999998853211 111 23345566655555555544 334556777776533221
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+.+..-.++.+......+.+.++..+. + .+++..+
T Consensus 153 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~-~i~v~~i 187 (263)
T PRK07814 153 AGRGFAAYGTAKAALAHYTRLAALDLC--P-RIRVNAI 187 (263)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHC--C-CceEEEE
Confidence 122333455543333345566666653 2 3544444
No 182
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0063 Score=55.68 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------ 110 (356)
.++|.|+||+|++|.+++..|+..|. +|++++++. ......++.... ..+..+. .-+| ...++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998887 888888764 122223333211 1222111 1122 22222
Q ss_pred -CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433 111 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 162 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 162 (356)
.+.|+||..+|.......+....+..|......+++.+.++. .++.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 368999998875322111222334566666666777776654 3456666654
No 183
>PRK07069 short chain dehydrogenase; Validated
Probab=96.91 E-value=0.052 Score=49.52 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=66.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHHHHhcCCCCCeEEEEe-CCCC---hh-------hhhC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT 111 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~-~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------~al~ 111 (356)
||.|+||+|.+|.+++..|+..|. +|++.|.+ . +.....++........+..+. .-+| +. +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999998887 89999987 3 222333333221111111110 0122 11 1234
Q ss_pred CCcEEEEcCCCCCCC---CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP 163 (356)
..|+||..+|..... ..+ ....+..|+. ..+.+.+.+++.. .+.|+++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~ 139 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSV 139 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecCh
Confidence 689999999864321 111 2334556666 6677777776543 3456666543
No 184
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.039 Score=51.66 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEe----CCCChhhhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL----GQPQLENAL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~----~t~d~~~al 110 (356)
.+++.|+||+|.+|..++..|+..|. +|+++|++.. ...+.++.... ..+..+. ...+.++.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence 35899999999999999999998887 8999998641 11222232211 1111111 111222223
Q ss_pred C-------CCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHH
Q 018433 111 T-------GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV 174 (356)
Q Consensus 111 ~-------~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~ 174 (356)
+ ..|++|.++|.... + ..+. ...+..|+.....+.+.+..+ ...+.++++|.+....
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------- 154 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD------- 154 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc-------
Confidence 2 67999999986321 1 1222 223455665555555555432 2356777776543211
Q ss_pred HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218 (356)
Q Consensus 175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG 218 (356)
...++..-.++.+.....++-+.++..++ +..|++..+.
T Consensus 155 ---~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~ 193 (273)
T PRK08278 155 ---PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW 193 (273)
T ss_pred ---ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence 01123344566665455567777777775 4456555443
No 185
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.019 Score=53.64 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=65.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTGM 113 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~a 113 (356)
++|.|+||+|++|+.++..|+..+. .+++++.+.. ...++.... ...+..+.. -+|. .++ +...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999998887 8888887641 111121110 112222111 1222 122 2457
Q ss_pred cEEEEcCCCCCCCC-C--c---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 114 DLVIIPAGVPRKPG-M--T---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 114 DiVIi~ag~~~~~g-~--~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
|+||.++|...... . + -...+..|......+.+.+..+ ...+.++++|.
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS 135 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS 135 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 99999998653211 1 1 2234567777777777776332 23345666654
No 186
>PRK06924 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.009 Score=54.78 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=30.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
++|.|+||+|.+|+.++..|+..|. +|++++++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999887 899999865
No 187
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.89 E-value=0.032 Score=51.99 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------ 111 (356)
.++|.|+||+|.+|+.++..|+..|. +|++++.+. ......++........+..+.. -+| ..+.++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 899999875 2223333332211112222111 122 222233
Q ss_pred -CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433 112 -GMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT 180 (356)
Q Consensus 112 -~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~ 180 (356)
..|++|..+|.....+ .+ -...+..|......+.+.+.+. ...+.++++|..... .+
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~------------~~ 152 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS------------NT 152 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc------------CC
Confidence 6799999988532111 12 1233455666666665544433 234667766543211 11
Q ss_pred CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218 (356)
Q Consensus 181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG 218 (356)
.|..-.++.+......+-+.+++.++ +..+++.++.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~ 188 (276)
T PRK05875 153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR 188 (276)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence 22222344443333445556666654 4556655554
No 188
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.89 E-value=0.013 Score=54.49 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
.+++.|+||+|.+|..++..|+..|. +|++.|++.. .....++. ..+..+. .-+| .++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 9999998752 22222221 1111111 0112 22222
Q ss_pred CCCcEEEEcCCCCCCC--CCc---HHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433 111 TGMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~ 183 (356)
...|++|..+|..... ..+ ....+..|+.....+.+.+... .+.+.|++++.-.... +.+.
T Consensus 79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~ 146 (261)
T PRK08265 79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------AQTG 146 (261)
T ss_pred CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------CCCC
Confidence 3579999998864221 122 2233445665444444443322 3456777765432211 1222
Q ss_pred CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.-.++.+......+-+.++..++ +..|++.++
T Consensus 147 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v 178 (261)
T PRK08265 147 RWLYPASKAAIRQLTRSMAMDLA--PDGIRVNSV 178 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence 22334433233345566666653 345554444
No 189
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=96.88 E-value=0.038 Score=50.56 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe--CC-CC----------
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL--GQ-PQ---------- 105 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~--~t-~d---------- 105 (356)
..+.++|.|+|++|.+|.+++..|+..|. +|+++|++. ......++.+... ..+..+. .+ .+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHH
Confidence 44567999999999999999999998887 999999876 2333344443321 1111110 00 01
Q ss_pred hhhhhCCCcEEEEcCCCCCC--C--CCcH---HHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 018433 106 LENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP 163 (356)
Q Consensus 106 ~~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNP 163 (356)
+.+.+...|+||..+|.... + ..+. ...+..|......+.+.+.. ..+...|+++|.-
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~ 153 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSS 153 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccH
Confidence 12233568999999875321 1 2222 23455666654444444432 2345566666653
No 190
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=96.86 E-value=0.011 Score=55.99 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=96.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHHHHhcCCCCCeEEEEeC-CCChhhhhC--CCcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLG-QPQLENALT--GMDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~-t~d~~~al~--~aDiVIi 118 (356)
|+|.|+|+|||+||++...+..+....+|+.+|.-.--| ...++.+......++.-.+ .......++ +.|+|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 689999999999999998888776656889999865222 2234444321122322111 112233455 6899999
Q ss_pred cCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHH
Q 018433 119 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV 195 (356)
Q Consensus 119 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~ 195 (356)
.|.-..- .=..-..++..|+-....+.++++++...-.++-+ |--|.---..-...+-+.+.+.|+-.+.-+.-.+.
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD 160 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD 160 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence 7753210 01123577899999999999999999865334433 44332110000000123455777777766433333
Q ss_pred HHHHHHHHHhCCCC
Q 018433 196 RANTFVAEVLGLDP 209 (356)
Q Consensus 196 R~~~~la~~l~v~~ 209 (356)
-|-+...+.+|++.
T Consensus 161 ~lVray~~TYglp~ 174 (340)
T COG1088 161 LLVRAYVRTYGLPA 174 (340)
T ss_pred HHHHHHHHHcCCce
Confidence 45556667778764
No 191
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.86 E-value=0.0085 Score=56.78 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=67.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hh-HHHHHhcCCCCCeEEEEeC----CCChhhhhC--CCcEEE
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTGAVVRGFLG----QPQLENALT--GMDLVI 117 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g-~~~dl~~~~~~~~v~~~~~----t~d~~~al~--~aDiVI 117 (356)
||.|+||+|++|+.++..|...+. +++++|.... .. ....+.+. ..+..+.. ..++.++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999998887 7888886431 11 11111111 01222111 122334443 689999
Q ss_pred EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.++|..... .....+.+..|+.....+++.+.+.... .++++|
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~s 120 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSS 120 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEec
Confidence 999864321 1223455678899899999888876543 344443
No 192
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.86 E-value=0.0073 Score=59.39 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=46.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.||+|||+ |.+|.+++..|...++ ++.++|.+........-.... .... .++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~---~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFG---VIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence 37999999 9999999999998887 778888776221111111111 1111 1356778899999999985
No 193
>PRK09135 pteridine reductase; Provisional
Probab=96.86 E-value=0.029 Score=51.04 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=80.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhhC------
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT------ 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~------ 111 (356)
++|.|+||+|++|++++..|+..+. +++++|... ......++.+... ..+..+. .-+|. ..+++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999998887 999999754 2222333333211 1111111 11222 22233
Q ss_pred -CCcEEEEcCCCCC--CCC----CcHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433 112 -GMDLVIIPAGVPR--KPG----MTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYD 182 (356)
Q Consensus 112 -~aDiVIi~ag~~~--~~g----~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv~~~t~~~~~~~~~~~~~~ 182 (356)
..|+||.++|... ... .+..+.+..|+.....+.+.+.++- ..+.++..+. . .....++
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~ 151 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD----I--------HAERPLK 151 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC----h--------hhcCCCC
Confidence 5799999988532 111 1123456677776666666665432 1334443332 1 0112344
Q ss_pred CCCEEEechhhHHHHHHHHHHHhC
Q 018433 183 PKKLLGVTMLDVVRANTFVAEVLG 206 (356)
Q Consensus 183 ~~kviG~t~ld~~R~~~~la~~l~ 206 (356)
+...++.+......+-..+++.++
T Consensus 152 ~~~~Y~~sK~~~~~~~~~l~~~~~ 175 (249)
T PRK09135 152 GYPVYCAAKAALEMLTRSLALELA 175 (249)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHC
Confidence 444556554444445555666653
No 194
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.86 E-value=0.0095 Score=57.98 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..++|+|||. |.+|..+|..|...|. +|+.+|++... ..+. +. ...++++++++||+|++..-.
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~--~~~~--------~~---~~~~l~ell~~aDiVil~lP~ 208 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNK--DLDF--------LT---YKDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhH--hhhh--------hh---ccCCHHHHHhcCCEEEEeCCC
Confidence 4579999999 9999999999987676 99999986511 0010 11 124678899999999997521
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
. ..+...+. ...+....|++++|+++-
T Consensus 209 t-----------~~t~~li~--~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 209 N-----------KESYHLFD--KAMFDHVKKGAILVNAAR 235 (330)
T ss_pred c-----------HHHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence 1 11222221 122333347889999873
No 195
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.012 Score=53.16 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEE--eCCCChhhhh-------CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF--LGQPQLENAL-------TG 112 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~--~~t~d~~~al-------~~ 112 (356)
.++|.|+||+|.+|..++..|+..|. +++++|++.. .....++.... ..+... ....++++++ ..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 45899999999999999999998887 8999998761 12222332221 111111 0011222222 36
Q ss_pred CcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 113 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 113 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
.|+||..+|..... ..+. .+.+..|......+.+.+.+. .+...++++|.
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 89999988753211 1111 233455655555555554432 34456666654
No 196
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.85 E-value=0.02 Score=52.22 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
.++|.|+||+|.+|+.++..|+..+. +|+++|.+. ......++.... ..+..+.. -+| .++++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887 899999876 222223333221 12222111 112 22222
Q ss_pred CCCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
...|+||..+|...... .+. ...+..|+.....+.+.+... .+...+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 35899999987532111 122 233566776666665555432 23345666654
No 197
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.84 E-value=0.0061 Score=58.73 Aligned_cols=120 Identities=22% Similarity=0.229 Sum_probs=72.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHH---HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT---ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~---~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|+|+ |.+|+.++..|.+.+. .+.++-+.+. ...- +.+.+.......... .+++ .+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEEe
Confidence 79999999 9999999999999883 6666655431 1111 111111110111111 1223 46678999999985
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE-EEechh
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL-LGVTML 192 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv-iG~t~l 192 (356)
-.. -..+..+.+..+. |+.+|+..-|=.+..- .+++. +|.+++ .|+|..
T Consensus 76 Ka~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-----~l~~~--~~~~~il~G~~~~ 126 (307)
T COG1893 76 KAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-----ELRKI--LPKETVLGGVTTH 126 (307)
T ss_pred ccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-----HHHHh--CCcceEEEEEeee
Confidence 211 1456667777776 6778888888888663 23433 555544 556543
No 198
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.84 E-value=0.01 Score=54.39 Aligned_cols=114 Identities=13% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
.++|.|+||+|.+|++++..|+..|. +++++|++. ......++.... ..+..+. .-+| +.+++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 999999876 233333343211 1222211 1112 22222
Q ss_pred CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
.+.|+||..+|...... .+ -.+.+..|... ++.+.+.+++.. ...|+++|.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss 140 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS 140 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence 36899999988542111 11 12234455554 555555555443 345555554
No 199
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.83 E-value=0.0096 Score=58.96 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.+||+|||+.|.+|..++..|...|+ +|.++|.+.. ++.++++++||+||++.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 47999999559999999999999887 8999997420 13457789999999985
No 200
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.83 E-value=0.032 Score=50.78 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
.+++.|+|++|.+|.+++..|+..|. +|++++++. ......++... ...+..+.. -+| +.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 899999876 22222333321 123332211 112 22223
Q ss_pred CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433 111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 164 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv 164 (356)
.+.|+||.++|..... +.+. ...+..|......+.+.+..+ ...+.+++++...
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~ 145 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA 145 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence 3789999998864321 1111 233456665444455444432 2234556565543
No 201
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.82 E-value=0.009 Score=54.33 Aligned_cols=114 Identities=21% Similarity=0.332 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhh-------hh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~-------al 110 (356)
.+++.|+||+|.+|+.++..|+..+. .+++.+.+. +.....++. ..+..+. .-+| +++ .+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 788888764 222222221 1111111 1112 111 13
Q ss_pred CCCcEEEEcCCCCCCC---C---CcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433 111 TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 164 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv 164 (356)
...|+||..+|..... . .+-...+..|+.....+++.+.+. .+.+.++++|...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV 141 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 4689999999864211 1 112334566666655555544322 2456777776543
No 202
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.026 Score=53.01 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
.+.+.|+||+|.+|++++..|+..|. +|++.|.+. +.....++.... ..+..+.. -+| ..+++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34799999999999999999999887 899999876 222333343221 12222111 122 22222
Q ss_pred CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN 162 (356)
...|++|..+|..... ..+. ...+..|......+.+. +.+....+.|+++|.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3479999999864211 1222 23345665544444444 444433466776664
No 203
>PRK12827 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.042 Score=49.97 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c----hhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh--
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T----PGVTADISHMDTGAVVRGFLG-QPQL---ENAL-- 110 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~----~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-- 110 (356)
+.++|.|+||+|.+|+.++..|+..+. ++++++... . .....++... ...+..+.. -+|. ++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999998887 889988643 1 1111222211 112222111 1222 2222
Q ss_pred -----CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCCC
Q 018433 111 -----TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPV 164 (356)
Q Consensus 111 -----~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNPv 164 (356)
...|+||..+|..... ..+ -...+..|......+++.+.+ ......+++++...
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 149 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVA 149 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCch
Confidence 3689999999864311 111 123456777777777777661 22334566665443
No 204
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.096 Score=48.81 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=66.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCCh----------hhhhCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~----------~~al~~ 112 (356)
+++.|+||+|.+|..++..|+..|. ++++++++. +.....++..............-+|. .+.+..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 3799999999999999999998886 899999875 22233333322111111000001121 122346
Q ss_pred CcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCCC
Q 018433 113 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPV 164 (356)
Q Consensus 113 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNPv 164 (356)
.|+||..+|..... ..+. ...+..|......+.+.+. +....+.|+++|...
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 89999999864211 1121 2345566665555555543 323346777776554
No 205
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.79 E-value=0.019 Score=53.48 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
..+|.|+||+|.+|+.++..|+..|. +|+++|++. ......++.... ..+..+. .-+| ...++
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34899999999999999999998887 899999875 222223333211 1111110 0112 22222
Q ss_pred CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 018433 111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV 164 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNPv 164 (356)
...|++|..+|..... ..+. ...+..|......+.+.+... .+++.|+++|.+.
T Consensus 85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 3569999988753211 1122 233456666555555554432 1356777777654
No 206
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.78 E-value=0.0046 Score=52.16 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433 41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 118 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi 118 (356)
..+..++.|+|| |.+|..++..|...+. .+|.+++++. ++..+..+ ....+.... .+++.+.+.++|+||.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVIN 81 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEE
Confidence 345679999999 9999999999998865 4799999875 23333333 122344432 3567778999999999
Q ss_pred cCCCC
Q 018433 119 PAGVP 123 (356)
Q Consensus 119 ~ag~~ 123 (356)
+.+.+
T Consensus 82 aT~~~ 86 (135)
T PF01488_consen 82 ATPSG 86 (135)
T ss_dssp -SSTT
T ss_pred ecCCC
Confidence 86654
No 207
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.78 E-value=0.003 Score=53.71 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=71.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHh-----cCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-----HMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~-----~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
|+|+|+ |.+|..+|..|.+.+. ++.|++... ......-. +......+.......+..+....+|+||++.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 9999999999999888 999999865 22211111 11100112211111222246799999999852
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-ch
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM 191 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ 191 (356)
.. + ..+..+.++.+. |+..|+.+-|=++..- .+.+. +|+.++++- +.
T Consensus 77 a~----~------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~ 125 (151)
T PF02558_consen 77 AY----Q------------LEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT 125 (151)
T ss_dssp GG----G------------HHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred cc----c------------hHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence 11 1 345666677766 6778888888887653 23333 566788665 54
No 208
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.03 Score=52.47 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 112 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~ 112 (356)
.++|.|+||+|.+|++++..|+..|. +|++++++.... .++.... ...+..+. .-+| ..+++ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999998887 899999875211 1222211 11111111 1122 12222 25
Q ss_pred CcEEEEcCCCCCC---CCCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 113 MDLVIIPAGVPRK---PGMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 113 aDiVIi~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
.|+||.++|.... ...+. ...+..|+.....+.+.+..+ ...+.+|++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 8999999986421 11222 234667777666666664432 22346666664
No 209
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.053 Score=50.01 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
.+++.|+||+|.+|..++..|+..|. +|+++|++. ......++........+..+. .-+| ..+++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999887 899999876 333333443311112222211 1122 22222
Q ss_pred CCCcEEEEcCCCCCC-C-C-Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433 111 TGMDLVIIPAGVPRK-P-G-MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~-~-g-~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~ 180 (356)
...|++|..+|.... + . .+ -...+..|......+.+. +.+. ..+.|+++|...... +
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~ 151 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIASTHAFK------------I 151 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECChhhcc------------C
Confidence 368999999986421 1 1 11 223344555544444444 4332 346677765432211 1
Q ss_pred CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.+..-.++.+......+-+.+++.+. +..|++..+
T Consensus 152 ~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn~v 186 (260)
T PRK07063 152 IPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVNAI 186 (260)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence 22222234433333345566666663 445554444
No 210
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.76 E-value=0.0085 Score=56.69 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=46.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+||+|||+ |++|++++..|+..+. ..+|+.+|++.. ....+.+.. . +.. .++..+.+++||+||++.
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~---~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITI---TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEE---eCCcHHHHhhCCEEEEEe
Confidence 58999999 9999999999998774 457999998651 122222211 1 222 134457789999999985
No 211
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.026 Score=53.68 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=58.5
Q ss_pred ccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC
Q 018433 17 HLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG 94 (356)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~ 94 (356)
.+-||--.| +++.+..+...-...++|.|+||+|.+|..++..|+..|. +|+++|++. +.....++....
T Consensus 17 ~~~~~~~~~----~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~-- 88 (293)
T PRK05866 17 GMRPPISPQ----LLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG-- 88 (293)
T ss_pred ccCCCCCch----hhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--
Confidence 345665444 3443333333223346899999999999999999998887 999999876 233333332211
Q ss_pred CeEEEEeC-CCC---hhhhh-------CCCcEEEEcCCCC
Q 018433 95 AVVRGFLG-QPQ---LENAL-------TGMDLVIIPAGVP 123 (356)
Q Consensus 95 ~~v~~~~~-t~d---~~~al-------~~aDiVIi~ag~~ 123 (356)
..+..+.. -+| ..+++ ...|++|..+|..
T Consensus 89 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 89 GDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 11211111 112 22233 3789999998864
No 212
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.73 E-value=0.06 Score=49.82 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=96.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCC-------CChhhhhCCCc
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQ-------PQLENALTGMD 114 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t-------~d~~~al~~aD 114 (356)
+-+.|+||++-+|..+|..|+..|. .++|..++. ++..+.++.+....+ .+... .. ....+.+...|
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVt-D~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVT-DRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccC-CHHHHHHHHHHHHHhhCccc
Confidence 4588999999999999999999999 999999987 666676676411111 11110 00 11334567899
Q ss_pred EEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433 115 LVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 185 (356)
Q Consensus 115 iVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k 185 (356)
++|..||..+... .+...++..|++.+......+--. ...+.|||++.=.... .||...
T Consensus 84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~ 151 (246)
T COG4221 84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGA 151 (246)
T ss_pred EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCc
Confidence 9999999754321 134567788887776666555422 2366888887655433 266778
Q ss_pred EEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
++|-|.-...-|..-|-+.+ ..+.|++..|
T Consensus 152 vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I 181 (246)
T COG4221 152 VYGATKAAVRAFSLGLRQEL--AGTGIRVTVI 181 (246)
T ss_pred cchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence 88766433322222222222 2355665554
No 213
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.055 Score=49.42 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
.+++.|+||+|.+|+.++..|+..|. ++++++.+. ......++. . ...+..+. .-+| .++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999998886 899999875 222222232 1 12222221 1122 22222
Q ss_pred CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tN 162 (356)
.+.|+||..+|..... ..+. ...+..|......+.+ .+++. ....|+++|.
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 140 (252)
T PRK06138 80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTAS 140 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 3789999998864211 1111 2234556555444444 33333 3345665554
No 214
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.70 E-value=0.0079 Score=57.60 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a 120 (356)
|||+|||. |.+|+.++..|...+. +|+.+|+++.. +..+.+.. ... ..++++.+++ +|+||++.
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence 58999999 9999999999998887 89999987521 12222211 121 2355666655 68998874
No 215
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.70 E-value=0.013 Score=55.40 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=44.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||. |.+|..++..|...++..+|+.+|+++.. ...+.+... ... ..++.+ +.+||+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 58999999 99999999999988865588999987511 111222111 111 124445 45699999985
No 216
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=96.70 E-value=0.025 Score=51.10 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=67.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 112 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~ 112 (356)
|.|+|++|.+|+.++..|+.+|. ++++++.+. ......++.+.. ..+.... .-+| +++++ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46999999999999999999887 899998764 222333343322 1122111 1122 22233 34
Q ss_pred CcEEEEcCCCCCC-C--C---CcHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 018433 113 MDLVIIPAGVPRK-P--G---MTRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPV 164 (356)
Q Consensus 113 aDiVIi~ag~~~~-~--g---~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNPv 164 (356)
.|+||..+|.... + + ......+..|......+.+.+.++. ..+.++++|...
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 137 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV 137 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 6999999886421 1 1 1123456778877777777766542 244666666543
No 217
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.70 E-value=0.009 Score=57.12 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=47.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+||+|||. |.+|..++..|+..+. +|+++|++... ..++.... .. ..+++.+++++||+||++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~---~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----AT---PAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence 48999999 9999999999998887 89999987621 22222211 11 1245668899999999974
No 218
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.047 Score=49.74 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al------- 110 (356)
.++|.|+||+|.+|+.++..|+..|. ++++++.++ ......++.... ..+..+. .-+|. ++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998887 899998865 222333443221 1222221 11222 1122
Q ss_pred CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
.+.|+||..+|..... ..+. ...+..|......+.+.+..+ ...+.++++|.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 4789999998864321 1121 233456666665665555433 23457776655
No 219
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.69 E-value=0.017 Score=53.07 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 110 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------ 110 (356)
+.++|.|+||+|.+|+.++..|+..|. .|+++|++. +.....++.... ..+..+. .-+| +..++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999998887 899999976 233333443221 1122111 1122 22222
Q ss_pred -CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433 111 -TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 164 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv 164 (356)
...|+||..+|.... + ..+ -...+..|......+.+.+.+. ...+.++++|...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence 245899999886321 1 111 2234566666555555444332 2346677776654
No 220
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.68 E-value=0.0096 Score=60.67 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=61.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--CCeEEEEeCCCChhhhhC---CCcEEEEc
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVIIP 119 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~---~aDiVIi~ 119 (356)
.+|+|||. |.+|+++|..|+..|+ +|.++|++.. .+.++..... ...+.. +.+++++++ ++|+||+.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~--~~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYE--KTEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence 48999999 9999999999999998 9999999762 1122222100 112222 356767665 58988886
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 165 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~ 165 (356)
.-. ...+.++.+.+..+ .|+.+||..+|-..
T Consensus 74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~~ 105 (470)
T PTZ00142 74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEWY 105 (470)
T ss_pred eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 321 12233343444443 36778888876443
No 221
>PRK06701 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.03 Score=53.14 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-----
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL----- 110 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al----- 110 (356)
+.++|.|+||+|.+|++++..|+..|. ++++++.+. .......+... ...+..+.. -+| +.+.+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998887 899999875 12222223221 122222111 112 22222
Q ss_pred --CCCcEEEEcCCCCCC--C--CCc---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 018433 111 --TGMDLVIIPAGVPRK--P--GMT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP 163 (356)
Q Consensus 111 --~~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP 163 (356)
...|+||..+|.... + ..+ -...+..|+.....+.+.+.++ .+.+.+|++|.-
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI 183 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence 357999999886321 1 111 2345677887777877777654 345667776653
No 222
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.019 Score=56.43 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=69.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhH------HHH--HhcCCCCCeEEEEeCCCChhhhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV------TAD--ISHMDTGAVVRGFLGQPQLENAL 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~------~g~------~~d--l~~~~~~~~v~~~~~t~d~~~al 110 (356)
++|+|||- |+||..+|-.++..|. .++-+|+|+. .|. ..| +.......+++. |+|. +.+
T Consensus 10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l 82 (436)
T COG0677 10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL 82 (436)
T ss_pred eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence 79999999 9999999999999998 9999999871 111 011 111111234553 5676 557
Q ss_pred CCCcEEEEcCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhCCCc-EE-EEecCCCCccHHH
Q 018433 111 TGMDLVIIPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNA-TV-NLISNPVNSTVPI 170 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~v-iv~tNPv~~~t~~ 170 (356)
+.||++|++.-.|.+.. +.-+.+ +.+-++.|.++=.++ .| +=.|-|.+..-.+
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~-------v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v 138 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSY-------VESAARSIAPVLKKGDLVILESTTPPGTTEEV 138 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHH-------HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHH
Confidence 89999999876665432 222232 334445555544333 33 2236777665444
No 223
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.67 E-value=0.011 Score=56.19 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=48.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+||++||- |.+|+..|..|...|+ +++.+|++..+. +..+..... .. ..++.++.++||+||..-
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEec
Confidence 58999999 9999999999999998 999999976332 222333211 11 134468999999999974
No 224
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.67 E-value=0.026 Score=53.47 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=62.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
+||+|||+ |.+|.+++..|...+. ..+|+++|.+... ....+... ...+.. ++|..++++++|+||++.-
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp- 73 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP- 73 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC-
Confidence 68999999 9999999999988762 2589999986411 11222221 112222 2455677899999998852
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 166 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~ 166 (356)
| ..+.++++.+..+- ++..||.+.|-++.
T Consensus 74 p---------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 P---------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 1 12445556665544 45566666666553
No 225
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.66 E-value=0.1 Score=47.55 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCCh---h-------hhhC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---E-------NALT 111 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~al~ 111 (356)
+.++|.|+||+|.+|.+++..|+..|. +|++++.+........+.... ..+..+. .-+|. . +.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 345899999999999999999999887 899999865322222232221 1122111 11221 1 1224
Q ss_pred CCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tN 162 (356)
..|++|..+|...... . .-.+.+..|......+.+.+.+ ....+.+++++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999988642111 1 1223456676655555555443 222466666654
No 226
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.099 Score=47.90 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
++|.|+||+|.+|++++..|+..|. +++++|.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4689999999999999999999887 899999754
No 227
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.65 E-value=0.011 Score=54.60 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC--C---CChhhhh-CCCcEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENAL-TGMDLV 116 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~al-~~aDiV 116 (356)
+++||.|+||+|++|+.++..|+..+. +|+.+.++...... .+... ..+..+.+ + .++.+++ .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~-~~~~~---~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKT-SLPQD---PSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHH-hcccC---CceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 457999999999999999999998887 78777665411111 11111 11211110 1 2344556 689999
Q ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
|..+|.....+. ...+..|......+.+.+.+.... .|+.+|
T Consensus 90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iS 131 (251)
T PLN00141 90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILVS 131 (251)
T ss_pred EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEEc
Confidence 998875422121 111233444456667777655433 444443
No 228
>PRK08589 short chain dehydrogenase; Validated
Probab=96.64 E-value=0.047 Score=51.03 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------hC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l~ 111 (356)
.+++.|+||+|.+|.+++..|+..|. +|+++|+++ +.....++.+.. ..+..+. .-+| ..++ +.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999887 899999874 233333443321 1111111 0112 1122 23
Q ss_pred CCcEEEEcCCCCCCCC----CcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433 112 GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
..|++|..+|.....+ .+. ...+..|+.. .+.+.+.+.+. .+.|++++...
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~ 143 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFS 143 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchh
Confidence 5799999998643211 111 2233445443 34444444432 36777776543
No 229
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.032 Score=51.49 Aligned_cols=35 Identities=37% Similarity=0.350 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+++|.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999887 899999875
No 230
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.066 Score=49.14 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hh-------
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN------- 108 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~------- 108 (356)
.+.++|.|+||+|.+|++++..|+..|. +|+++|+++ ......++.... ..+..+. .-+|. +.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999887 999999876 222233333211 1111111 11221 11
Q ss_pred hhCCCcEEEEcCCCCCC--C--CCcH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433 109 ALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 162 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN 162 (356)
.+...|+||..+|.... + ..+. ...+..|+.....+.+.+..+- ....||++|.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 12468999999986321 1 1222 2345566665666666655432 1246666654
No 231
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.63 E-value=0.018 Score=51.12 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=60.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|||+||||+|.+|+.++.....+|+ |++-+=++..+-.+. ... .-..-.++ ..+.+.+++.+-|+||.+-|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~-~i~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGV-TILQKDIF-DLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccc-eeeccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999999 888887776111110 000 00011111 11233578999999999876542
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
++.. ..-.+....+...++. +-...++++.
T Consensus 75 -~~~~-----~~~~k~~~~li~~l~~-agv~RllVVG 104 (211)
T COG2910 75 -SDND-----ELHSKSIEALIEALKG-AGVPRLLVVG 104 (211)
T ss_pred -CChh-----HHHHHHHHHHHHHHhh-cCCeeEEEEc
Confidence 2211 1112223444444443 2355667664
No 232
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.62 E-value=0.038 Score=50.97 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 112 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~ 112 (356)
.+++.|+||+|.+|..++..|+..|. +|++++.+........+.... .++..+. .-+| .++++ ..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999888 899998754222222222211 1222111 1122 22222 35
Q ss_pred CcEEEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433 113 MDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 182 (356)
Q Consensus 113 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~ 182 (356)
.|++|..+|..... ..+ ....+..|+.. .+.+.+.+.+....+.||+++...... +.+
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~ 151 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ------------GGI 151 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC------------CCC
Confidence 79999999864321 111 22334555544 444444454433346777776543221 112
Q ss_pred CCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
..-.++.+......+-+.+|..+. +..|++..+
T Consensus 152 ~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v 184 (251)
T PRK12481 152 RVPSYTASKSAVMGLTRALATELS--QYNINVNAI 184 (251)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence 222345544344456666677653 444544444
No 233
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.62 E-value=0.047 Score=50.33 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=69.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a-------l 110 (356)
.++|.|+||+|.+|++++..|+..|. +|+++|.+. ......++.... ..+..+. .-+|.+ ++ +
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998887 899999865 222222232211 1221111 112321 11 2
Q ss_pred CCCcEEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP 163 (356)
...|+||.++|...... ......+..|+.....+.+.+..+ .+.+.++++|..
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~ 150 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV 150 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 46799999988532111 112345667887777777766554 244566666653
No 234
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0033 Score=57.83 Aligned_cols=70 Identities=26% Similarity=0.316 Sum_probs=46.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hhhh-hCCCcEEEEc
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP 119 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~ 119 (356)
|+|+|+|+ |.+|+++|..|...|. +++++|.++ ..... +.+.....-+.+ . .+| +++| +.++|.+|.+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~--~~~~~~~~~v~g-d-~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEF--LADELDTHVVIG-D-ATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH--hhhhcceEEEEe-c-CCCHHHHHhcCCCcCCEEEEe
Confidence 68999999 9999999999999998 999999987 21111 111110111222 1 123 2333 5888999998
Q ss_pred CC
Q 018433 120 AG 121 (356)
Q Consensus 120 ag 121 (356)
.|
T Consensus 74 t~ 75 (225)
T COG0569 74 TG 75 (225)
T ss_pred eC
Confidence 64
No 235
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.05 Score=49.67 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCChh---h-------hh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE---N-------AL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~~---~-------al 110 (356)
.+++.|+||+|.+|.+++..|+..|. +|+++|+++ ......++.+.. ..+..+ ..-+|.. + .+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 899999875 222222232211 111111 1112321 1 12
Q ss_pred CCCcEEEEcCCCCC----CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPR----KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~----~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
...|+||.++|... .+ ..+. .+.+..|......+.+.+..+. ..+.|+++|.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 145 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSS 145 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEec
Confidence 36899999998632 11 1121 2345567666666666655442 2356666653
No 236
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.62 E-value=0.031 Score=53.69 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHH----HhcCCCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTAD----ISHMDTGAVVRGFLGQPQLENALTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~d----l~~~~~~~~v~~~~~t~d~~~al~~aDiVI 117 (356)
.|||+|+|+ |.||+.++..|...|. ++.|+++.. +.....+ +.+......+.... .+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~--~~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA--ET-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC--CC-cccccccCEEE
Confidence 479999999 9999999999998886 899999853 1111100 10000000111111 11 12356889999
Q ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
++.-. .. ..+..+.+..+. ++..|+.+-|=++.... +++. ++.+++++-
T Consensus 76 v~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~-----l~~~--~~~~~v~~g 125 (305)
T PRK05708 76 LACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDA-----VAAR--VPHARCIFA 125 (305)
T ss_pred EECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHH-----HHHh--CCCCcEEEE
Confidence 98521 11 223444555443 78888888898887643 2333 566777765
No 237
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.034 Score=51.32 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=67.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------C
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------~ 111 (356)
++|.|+||+|.+|..++..|+..+. +|+++|++. ......++.... ..+..+.. -+|. .+++ .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998887 899999876 222233343322 12222211 1222 1222 3
Q ss_pred CCcEEEEcCCCCCCCC---C-cH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 018433 112 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV 164 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g---~-~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv 164 (356)
+.|+||.++|...... . +. ...+..|......+.+.+..+. ..+.++++|...
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~ 139 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA 139 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 6799999988543211 1 11 2335666666666666654332 235666665543
No 238
>PRK05855 short chain dehydrogenase; Validated
Probab=96.61 E-value=0.06 Score=55.42 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=70.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCChh---hhh---
Q 018433 40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NAL--- 110 (356)
Q Consensus 40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~~---~al--- 110 (356)
...+.+++.|+||+|.+|.+++..|+..|. +|++.|++. +...+.++.... ..+..+.. -+|.+ +.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~ 386 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWV 386 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHH
Confidence 344567899999999999999999999888 899999876 233333343221 12222111 12221 112
Q ss_pred ----CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 018433 111 ----TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 111 ----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv 164 (356)
...|++|..+|..... ..+. ...+..|.... +...+.+.+....+.|+++|.-.
T Consensus 387 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~ 454 (582)
T PRK05855 387 RAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAA 454 (582)
T ss_pred HHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 3479999999875321 1121 23344565444 44445555555557777776543
No 239
>PLN02256 arogenate dehydrogenase
Probab=96.60 E-value=0.023 Score=54.70 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh-CCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~a 120 (356)
+.+||+|||+ |.+|..++..|...+. +|+.+|.+.....+.++ . +.. .++.++.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-----g--v~~---~~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-----G--VSF---FRDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-----C--Cee---eCCHHHHhhCCCCEEEEec
Confidence 5579999998 9999999999987775 89999987522122211 1 111 13555555 4799999985
No 240
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.027 Score=51.40 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al 110 (356)
.++|.|+||+|.+|+.++..|+..|. ++++++++. ......++ . ..+..+. ..+|. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999887 899999875 11111111 1 1121111 11222 1123
Q ss_pred CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 162 (356)
...|+||..+|...... .+ -...+..|+.....+.+.+..+- ..+.+++++.
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S 137 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGS 137 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46899999988643211 11 22346677777777777776532 2344555443
No 241
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.60 E-value=0.027 Score=51.30 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
.++|.|+||+|.+|.+++..|+..|. +|++++++. ......++.... ..+..+.. -+| +++.+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999998887 899999875 222223333221 22332211 112 22222
Q ss_pred CCCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN 162 (356)
...|+||..+|.... + ..+. ...+..|+.....+.+.+ .+.. ...++++|.
T Consensus 82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss 142 (251)
T PRK12826 82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS 142 (251)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence 368999999875421 1 1222 234556666555555554 3333 345555543
No 242
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.59 E-value=0.038 Score=51.01 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------- 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------- 111 (356)
.++|.|+||+|.+|..++..|+..|. .+++++.+. .......+.+.. ..+..+. ..+| .++.++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999998887 889998864 222222222211 1222211 1122 222233
Q ss_pred CCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP 163 (356)
..|++|.++|.... + ..+ ....+..|+.....+.+.+..+. ..+.++++|..
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 151 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASM 151 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 67999999886421 1 111 22345556655544554444322 24566666654
No 243
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.58 E-value=0.052 Score=50.39 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=62.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-------CCcEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-------GMDLVI 117 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-------~aDiVI 117 (356)
.+|.|+||+|.+|++++..|+..|. +|++.+++...... ..+.. ...... ....+++++++ ..|+||
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~~-~~~~D~-~d~~~~~~~~~~~~~~~g~~d~li 78 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGVE-LLELDV-TDDASVQAAVDEVIARAGRIDVLV 78 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCCe-eEEeec-CCHHHHHHHHHHHHHhCCCCCEEE
Confidence 4799999999999999999998887 89999987511100 01100 001111 01122333343 469999
Q ss_pred EcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 018433 118 IPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP 163 (356)
Q Consensus 118 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP 163 (356)
.++|...... .+ -...+..|......+.+. +++.. .+.|+++|..
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~ 133 (270)
T PRK06179 79 NNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV 133 (270)
T ss_pred ECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence 9998643211 11 234455565444444444 44333 4566666653
No 244
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.035 Score=51.04 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhh-------CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENAL-------TG 112 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-------~~ 112 (356)
.+++.|+||+|.+|..++..|+..+. +|+++|++... ... ...+..+.. ..+.++++ ..
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD----GRPAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc----CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999998887 89999987521 011 011111110 11222333 34
Q ss_pred CcEEEEcCCCCC-CCC--C---cHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433 113 MDLVIIPAGVPR-KPG--M---TRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAEVFKKAGTYD 182 (356)
Q Consensus 113 aDiVIi~ag~~~-~~g--~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~ 182 (356)
.|+||..+|... .+. . .....+..|+.....+.+.+..+ ...+.+|++|.-.... +.|
T Consensus 76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~ 143 (252)
T PRK07856 76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------PSP 143 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------CCC
Confidence 599999988532 111 1 12344566666666666555432 2346677766533211 222
Q ss_pred CCCEEEechhhHHHHHHHHHHHhC
Q 018433 183 PKKLLGVTMLDVVRANTFVAEVLG 206 (356)
Q Consensus 183 ~~kviG~t~ld~~R~~~~la~~l~ 206 (356)
..-.++.+......+-+.++..++
T Consensus 144 ~~~~Y~~sK~a~~~l~~~la~e~~ 167 (252)
T PRK07856 144 GTAAYGAAKAGLLNLTRSLAVEWA 167 (252)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhc
Confidence 233344443333445566677664
No 245
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.57 E-value=0.013 Score=54.91 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.|||+|||+ |.+|++++..|...+.. .+++.+|.+... + .... ..|..++++++|+||++.
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav 65 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV 65 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence 479999999 99999999999887632 358888876411 0 0111 134457789999999983
No 246
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.57 E-value=0.02 Score=54.79 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a 120 (356)
|||+|||. |.+|+.++..|+..+. +|+++|+++.. +.++.+.. +.. ..++.+..+. +|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 68999999 9999999999998887 89999997521 12222221 121 1344555554 69988874
No 247
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.56 E-value=0.018 Score=55.47 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
.+.++|+|+|+ |.+|..++..|...+ ..+|.++|++. +...+..+. ..+.. .+++.+++.++|+||.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA 245 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence 45689999999 999999998888754 24899999875 222332221 12211 13567888999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHh-CCCcEEEEecCCCCcc
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNST 167 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i-~~~-~p~a~viv~tNPv~~~ 167 (356)
.+.+.. .++...+ ... ....+++-+++|-|+-
T Consensus 246 t~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 246 TGAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred CCCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence 876521 1212222 111 2356888899999865
No 248
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.56 E-value=0.022 Score=52.34 Aligned_cols=113 Identities=20% Similarity=0.339 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------C
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~ 111 (356)
.++|.|+||+|.+|++++..|+..|. +|++.+++. ......++.. ..+..+. .-+| .++.+ .
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAFG 88 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35899999999999999999999887 899999875 2222222221 1111110 1112 22222 3
Q ss_pred CCcEEEEcCCCCCC-CC--Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK-PG--MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~g--~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
..|+||..+|.... +. .+ -...+..|......+.+.+..+ ...+.++++|.
T Consensus 89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 148 (255)
T PRK06841 89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS 148 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 67999999886421 11 11 1234566666666666665543 23456666654
No 249
>PLN02996 fatty acyl-CoA reductase
Probab=96.53 E-value=0.043 Score=56.32 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC----ch-hHHHHHhcCC------------C----CCeE
Q 018433 40 GGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN----TP-GVTADISHMD------------T----GAVV 97 (356)
Q Consensus 40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~----~~-g~~~dl~~~~------------~----~~~v 97 (356)
+|-+.+.|.|+||+|++|++++..|+.. .-+.+|+++.+.. .. ....++.+.. . ..++
T Consensus 7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv 86 (491)
T PLN02996 7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV 86 (491)
T ss_pred HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence 3455678999999999999999987764 4455777777654 11 1111111100 0 0233
Q ss_pred EEEeCC----------CC-hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 018433 98 RGFLGQ----------PQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 151 (356)
Q Consensus 98 ~~~~~t----------~d-~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~ 151 (356)
..+.+. .+ +++.++++|+||.+|+... ......+....|+....++.+...+.
T Consensus 87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 333221 11 3356689999999987543 22344556788999999999988764
No 250
>PRK06128 oxidoreductase; Provisional
Probab=96.51 E-value=0.07 Score=50.68 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------ 109 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a------ 109 (356)
.++|.|+||+|.+|.+++..|+..|. +|++.+.+. .......+.... ..+..+. .-+| .+++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998887 888877643 112222232221 1222111 1112 1122
Q ss_pred -hCCCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433 110 -LTGMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP 163 (356)
Q Consensus 110 -l~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP 163 (356)
+...|++|..+|... .+ ..+ -...+..|+.....+++.+..+. +.+.||++|.-
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~ 193 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSI 193 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCc
Confidence 346899999998642 21 112 33456788877777777776654 35677776543
No 251
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.51 E-value=0.026 Score=53.40 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC-c-h------hHHHHHhcCCCCCeEEEEeCCCCh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN-T-P------GVTADISHMDTGAVVRGFLGQPQL 106 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~----~~~-----~el~L~D~~~-~-~------g~~~dl~~~~~~~~v~~~~~t~d~ 106 (356)
..||.|.|| |..|..++..|... |+. ..++++|.+- + . ..-..+.+.. .. . ...++
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~--~~-~---~~~~L 97 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD--EE-K---EGKSL 97 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc--Cc-c---cCCCH
Confidence 469999999 99999999877653 552 6999999875 1 1 1111222211 11 1 13578
Q ss_pred hhhhC--CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 107 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 107 ~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
.++++ ++|++|=+.+.+ |- +-+++.+.|.+++++.+|+-.|||..
T Consensus 98 ~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred HHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 99999 999998876544 21 13588889999999999999999986
No 252
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=96.49 E-value=0.036 Score=53.27 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=69.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-----HHHhcC-----CCC-CeEEEEeCC----------C
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHM-----DTG-AVVRGFLGQ----------P 104 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~-----~dl~~~-----~~~-~~v~~~~~t----------~ 104 (356)
+|.|+||+|++|++++..|+..+...+|+++.++.....+ ..+... ... ..+....+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 5889999999999999999988754488888876521111 111110 000 233333211 1
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
++.+...++|+||.+++... ......++...|+.....+.+...+..... ++.+|
T Consensus 81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS 135 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS 135 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence 23445688999999987532 122334556788888888888887765443 44443
No 253
>PRK07985 oxidoreductase; Provisional
Probab=96.49 E-value=0.18 Score=47.80 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEe-CCCCh----------
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL-GQPQL---------- 106 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~-~t~d~---------- 106 (356)
.+.+++.|+||+|.+|.+++..|+..|. +|++.+.+. .......+.+.. ..+..+. .-+|.
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHH
Confidence 3446899999999999999999999887 888887643 111111122211 1222111 11222
Q ss_pred hhhhCCCcEEEEcCCCCCC--C--CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433 107 ENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP 163 (356)
Q Consensus 107 ~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP 163 (356)
.+.+...|++|..+|.... + ..+. ...+..|+.....+.+.+..+- ..+.||++|..
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~ 187 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI 187 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence 1223467999999885321 1 1222 3345677766666666655432 34677777654
No 254
>PRK09242 tropinone reductase; Provisional
Probab=96.47 E-value=0.12 Score=47.56 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENAL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al 110 (356)
.+++.|+||+|.+|..++..|+..|. +|++++++. ......++.......++..+.. -+| . .+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34899999999999999999999887 899999876 3333334433211122222111 011 1 1224
Q ss_pred CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNP 163 (356)
...|+||..+|.... + ..+ -...+..|+.....+.+.+.. ..+.+.++++|.-
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~ 148 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSV 148 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECcc
Confidence 567999999986321 1 111 223345565544444444432 1234566666543
No 255
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.11 Score=47.50 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=64.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh----------hhhC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al~ 111 (356)
+++.|+||+|.+|.+++..|+..+. ++++.+++. ......++........+.... .-+|.+ +.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998886 899999876 222233333221112222221 112221 2234
Q ss_pred CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tN 162 (356)
..|+||..+|...... .+ -...+..|......+.+.+. +.. ...++++|.
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS 140 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISS 140 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence 6899999998643221 11 12334566655555554443 333 345555553
No 256
>PRK12746 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.12 Score=47.42 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhhC-----
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT----- 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~----- 111 (356)
.++|.|+||+|.+|++++..|+..|. ++++.+ ++. ......++.... ..+..+. .-+|. .++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998886 776654 433 122222232111 1122111 11222 22222
Q ss_pred --------CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433 112 --------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 162 (356)
Q Consensus 112 --------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 162 (356)
+.|+||.++|...... .+ -...+..|+.....+.+.+.++. ..+.++++|.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 5899999998642211 11 13345577777767777666543 2345666554
No 257
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.46 E-value=0.011 Score=55.28 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chh------HHHHHhcCCCCCeEEEEeCCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPG------VTADISHMDTGAVVRGFLGQPQ 105 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~----~~~-----~el~L~D~~~--~~g------~~~dl~~~~~~~~v~~~~~t~d 105 (356)
+..||.+.|| |..|-.++..|... |+- ..++|+|.+- ..+ .-..+.+... .... ..+
T Consensus 24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~--~~~~---~~~ 97 (255)
T PF03949_consen 24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN--PEKD---WGS 97 (255)
T ss_dssp GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS--TTT-----SS
T ss_pred HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc--cccc---ccC
Confidence 4569999999 99999999877654 764 7899999875 111 1222322211 1110 147
Q ss_pred hhhhhCCC--cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHH
Q 018433 106 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP 169 (356)
Q Consensus 106 ~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~--~~t~ 169 (356)
+.++++++ |++|=+.+.+ |. +-+++.+.|.+++++.+|+-.|||.. -.++
T Consensus 98 L~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp HHHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred HHHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 89999999 9999887654 21 24688999999999999999999997 6654
No 258
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.46 E-value=0.0033 Score=59.80 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=59.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|||.|+||+|++|+++...|...++ +++.++... .|+.+.. .+ .++-+. ...|+||.+|+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~------~~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AV------AKLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HH------HHHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HH------HHHHHH-hCCCeEeccceeec
Confidence 8999999999999999999988776 888887653 2222211 00 011122 25899999987642
Q ss_pred CC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 125 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 125 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
.. ..........|......+++...+. ++.+|.+|
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S 100 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS 100 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence 11 1234555678999999999988875 45666554
No 259
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.46 E-value=0.02 Score=51.73 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.||.|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus 22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 38999999 9999999999999885 4999999874
No 260
>PRK09186 flagellin modification protein A; Provisional
Probab=96.43 E-value=0.04 Score=50.54 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.++|.|+||+|.+|.+++..|+..+. ++++.+++.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 346899999999999999999999887 899998865
No 261
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.43 E-value=0.036 Score=50.64 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=80.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhhC-------C-
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALT-------G- 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~-------~- 112 (356)
++|.|+||+|.+|++++..|+..|. ++++.+.+.. ....++.+.. ...+..+. ...++.++++ .
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSE-DAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCH-HHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4899999999999999999998887 7877665431 1111111110 01111111 0112223332 2
Q ss_pred CcEEEEcCCCCC-------CC--CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHH
Q 018433 113 MDLVIIPAGVPR-------KP--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKK 177 (356)
Q Consensus 113 aDiVIi~ag~~~-------~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~ 177 (356)
.|++|..+|... .+ ..+. ...+..|......+.+.+..+ ...+.+++++......
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---------- 151 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN---------- 151 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence 899999987521 11 1121 233556665555555554322 2346777776543211
Q ss_pred hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433 178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 215 (356)
Q Consensus 178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~ 215 (356)
..++.-.++.+......+-+.+++.++ +..|++.
T Consensus 152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~ 185 (253)
T PRK08642 152 --PVVPYHDYTTAKAALLGLTRNLAAELG--PYGITVN 185 (253)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence 122223456655555566677777764 3445443
No 262
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.42 E-value=0.039 Score=49.90 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------ 110 (356)
+++|.|+||+|.+|+.++..|++++. ++++..... ......++.... ..+..+.. -.| ..+++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999888 666655543 111222222211 22222211 112 12222
Q ss_pred -CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 018433 111 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS 161 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~t 161 (356)
.+.|+||.++|..... +.+. .+.+..|......+.+.+ ++.. ...++++|
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~S 142 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNIS 142 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence 4679999998853221 1122 334556666666666555 3333 33555554
No 263
>PRK06182 short chain dehydrogenase; Validated
Probab=96.42 E-value=0.044 Score=51.07 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhC-------CCcE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT-------GMDL 115 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~-------~aDi 115 (356)
.++|.|+||+|.+|..++..|+..|. +|++.+++... ..++..... ..+.. .....+..++++ +.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 45899999999999999999998887 89999987511 111211110 11111 111122223333 7899
Q ss_pred EEEcCCCCCC-C--C---CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 116 VIIPAGVPRK-P--G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 116 VIi~ag~~~~-~--g---~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
+|..+|.... + . ......+..|... ++.+.+.+++.. .+.|+++|.
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS 133 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINISS 133 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence 9999986421 1 1 1123344556544 555556665543 346666654
No 264
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.42 E-value=0.047 Score=50.87 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=30.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 34 ~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 34 RVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred eEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 9999999 9999999999999886 4999999875
No 265
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=96.42 E-value=0.11 Score=47.27 Aligned_cols=115 Identities=13% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------ 110 (356)
..++.|+||+|.+|++++..|+..+. ++++.+... ......++.+.. .++..+.. -+| ..+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999998886 777665432 222223343221 22222211 122 22222
Q ss_pred -CCCcEEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 111 -TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
...|+||..+|...... ..-.+.+..|......+.+.+..+ ...+.++++|.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34799999988643211 112344567776666666665543 23456666654
No 266
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.41 E-value=0.026 Score=55.73 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.++|+|||.+|.+|..++..|.... ..+|+-+|.. |. ..++..+++++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence 4699999998999999999998752 3488999873 11 0235567899999999985
No 267
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.057 Score=49.33 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=78.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC-eEEE-EeCCCChhhhhCC----CcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRG-FLGQPQLENALTG----MDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~-~v~~-~~~t~d~~~al~~----aDiVIi 118 (356)
.++.|+||+|.+|..++..|+..|. +++++|++.... .++.+..... .+.. .....+.+++++. .|.+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4789999999999999999998887 899999875111 1111111001 1111 0011223333333 477888
Q ss_pred cCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEech
Q 018433 119 PAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM 191 (356)
Q Consensus 119 ~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ 191 (356)
.+|...... .+. ...+..|......+.+.+..+- ....+++++.-.... +.|..-.++.+.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y~asK 145 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL------------ALPRAEAYGASK 145 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc------------CCCCCchhhHHH
Confidence 776432111 122 2456778877777777766542 345566665432211 233333455554
Q ss_pred hhHHHHHHHHHHHh
Q 018433 192 LDVVRANTFVAEVL 205 (356)
Q Consensus 192 ld~~R~~~~la~~l 205 (356)
.....+.+.++..+
T Consensus 146 ~a~~~~~~~l~~e~ 159 (240)
T PRK06101 146 AAVAYFARTLQLDL 159 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445556666544
No 268
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.41 E-value=0.016 Score=55.39 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--------------hHHHHHhcCCCCCeEEEEeCCCChhhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------------GVTADISHMDTGAVVRGFLGQPQLENA 109 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--------------g~~~dl~~~~~~~~v~~~~~t~d~~~a 109 (356)
.+||+-||| |+||......++.+=+--++.++|++..+ |.-.=..++. +.++- + ++|.+.+
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdieka 75 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKA 75 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHH
Confidence 369999999 99997766555544222399999998611 1110011121 12222 2 4799999
Q ss_pred hCCCcEEEEcCCCCCC
Q 018433 110 LTGMDLVIIPAGVPRK 125 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~ 125 (356)
++.||+|++....|.|
T Consensus 76 i~eadlvfisvntptk 91 (481)
T KOG2666|consen 76 IKEADLVFISVNTPTK 91 (481)
T ss_pred hhhcceEEEEecCCcc
Confidence 9999999998776643
No 269
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.40 E-value=0.028 Score=50.89 Aligned_cols=114 Identities=18% Similarity=0.304 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
.++|.|+||+|.+|..++..|+..|. +|++++++.. .....++.... ..+..+. .-+| +..++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998888 7999998762 22222333211 1222211 0112 22222
Q ss_pred CCCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 018433 111 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 161 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~t 161 (356)
...|.||..+|.... + ..+. .+.+..|......+.+.+..+ .....++++|
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s 140 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS 140 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 346999998875221 1 1111 233556666666666555432 2234555555
No 270
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.01 Score=54.81 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.++|.|+||+|.+|+.++..|+..|. +|++++++.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 45899999999999999999998887 899999865
No 271
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.40 E-value=0.049 Score=50.11 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC----chh-----HHHHHhcCCCCCeEEEEeCCCChhhhhC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN----TPG-----VTADISHMDTGAVVRGFLGQPQLENALT 111 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~----~~g-----~~~dl~~~~~~~~v~~~~~t~d~~~al~ 111 (356)
.+..||.|+|| |.+|..++..|...|. .++|+++|++. .+. ....+.+...... . ..++.++++
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~ 96 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALK 96 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHh
Confidence 34579999999 9999999999987765 23899999983 111 1122222110011 1 125678899
Q ss_pred CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433 112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 166 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~ 166 (356)
++|+||-+.+ +|+-. .++.+. .+++.+++..+||...
T Consensus 97 ~~dvlIgaT~----~G~~~-----------~~~l~~---m~~~~ivf~lsnP~~e 133 (226)
T cd05311 97 GADVFIGVSR----PGVVK-----------KEMIKK---MAKDPIVFALANPVPE 133 (226)
T ss_pred cCCEEEeCCC----CCCCC-----------HHHHHh---hCCCCEEEEeCCCCCc
Confidence 9999999864 34311 122233 2467788888899853
No 272
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.38 E-value=0.032 Score=50.64 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=45.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC------hhhhhCCCcEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI 117 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d------~~~al~~aDiVI 117 (356)
|+|.|+||+|.+|+.++..|+..+....+++.+.+.... ..+ ..+..+. .-+| ..+.+...|+||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998875434677777654211 111 1111111 0112 122356889999
Q ss_pred EcCCCC
Q 018433 118 IPAGVP 123 (356)
Q Consensus 118 i~ag~~ 123 (356)
..+|..
T Consensus 73 ~~aG~~ 78 (235)
T PRK09009 73 NCVGML 78 (235)
T ss_pred ECCccc
Confidence 999875
No 273
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.019 Score=52.19 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+.|+||+|.+|+.++..|+..+. +++++|++.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999998887 899999875
No 274
>PRK12742 oxidoreductase; Provisional
Probab=96.37 E-value=0.049 Score=49.30 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hhh---hCCCcEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENA---LTGMDLVI 117 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~a---l~~aDiVI 117 (356)
.++|.|+||+|.+|+.++..|+..|. ++++.+..... ...++.... ....... ..+|. .+. +...|++|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEEE
Confidence 45899999999999999999998887 78877654311 111111100 0111111 11222 122 24479999
Q ss_pred EcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433 118 IPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT 190 (356)
Q Consensus 118 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t 190 (356)
..+|...... .+ -...+..|......++..+... .+.+.+++++.-.... ...+....++.+
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~s 149 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAAS 149 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHHh
Confidence 9988643211 11 2234455665544444333332 2456666665432211 012334456665
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 191 MLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 191 ~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
......+-+.+++.++ +..|++.++
T Consensus 150 Kaa~~~~~~~la~~~~--~~gi~v~~v 174 (237)
T PRK12742 150 KSALQGMARGLARDFG--PRGITINVV 174 (237)
T ss_pred HHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence 4444456666777764 334444333
No 275
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.28 Score=45.57 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------CC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TG 112 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------~~ 112 (356)
+.+.|+||+|.+|..++..|+..|. +|+++|++. +.....++.... ...+..+. .-+| .++.+ ..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4789999999999999999999987 899999875 233333333221 11222211 1122 22222 35
Q ss_pred CcEEEEcCCCCCCC---CCcH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433 113 MDLVIIPAGVPRKP---GMTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 113 aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
.|++|..+|.+... ..+. ...+..| ....+.+.+.+++. ..+.||++|...
T Consensus 86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS~~ 146 (263)
T PRK08339 86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTSVA 146 (263)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCcc
Confidence 79999998865321 1121 2233444 34456666666543 346777776543
No 276
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.037 Score=53.08 Aligned_cols=170 Identities=16% Similarity=0.051 Sum_probs=85.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---h-------hhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E-------NAL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~al 110 (356)
.+++.|+||+|.+|..++..|+..|. +|++.+++. ......++........+..+. .-+|+ + +..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35899999999999999999999887 899999876 222233343221111222211 11222 1 112
Q ss_pred CCCcEEEEcCCCCCCC--CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433 111 TGMDLVIIPAGVPRKP--GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 181 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~ 181 (356)
...|++|..||....+ ..+ -...+..|... .+.+.+.+++. .+.|+++|.-......+-..-+.....+
T Consensus 92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~~ 169 (313)
T PRK05854 92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERSY 169 (313)
T ss_pred CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCcccccccccC
Confidence 4589999999863221 111 22234445443 44455555432 4556666543221100000000000113
Q ss_pred CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
++...++.+.+....+-..+++.+......|.+..+
T Consensus 170 ~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v 205 (313)
T PRK05854 170 AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA 205 (313)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 333445555555555666677665444444554444
No 277
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.34 E-value=0.06 Score=52.00 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=66.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE--eCCCCh-------hhhhC--
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQPQL-------ENALT-- 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~--~~t~d~-------~~al~-- 111 (356)
..+.|+||+|.+|.++|..|+..|. +|+++|+++ ++..+.++........+..+ .-++|. .+.+.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 4799999999999999999999887 899999987 33344445432111122211 011121 12233
Q ss_pred CCcEEEEcCCCCCC---C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK---P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~---~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
|.|++|..+|.... + ..+ -...+..|......+.+.+... ...+.|+++|.
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS 193 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGS 193 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 45589999886421 1 112 1234556665555555444322 23466676654
No 278
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.33 E-value=0.03 Score=51.85 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.+++.|+||+|.+|++++..|+..|. +|+++|++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999887 899999865
No 279
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.33 E-value=0.027 Score=54.79 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+.+||+|||. |++|.+++..|...+. +++..+.+..... +...... +.. .+..+++++||+|+++.
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~G---~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEADG---FEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence 4569999999 9999999999998887 8888776541111 1111111 111 25678999999999985
No 280
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.33 E-value=0.052 Score=50.51 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCC-------hhhhhCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQ-------LENALTGM 113 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d-------~~~al~~a 113 (356)
.++|.|+||+|.+|..++..|+..|. .+++.+++. +.....++..... ..++. ...+ ..+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVT---DPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCC---CHHHHHHHHHHHHHHcCCC
Confidence 45899999999999999999998887 789999875 2222222221100 00111 0011 11223568
Q ss_pred cEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCC
Q 018433 114 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 114 DiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNPv 164 (356)
|++|..+|...... .+ -...+..|+..... +.+.+.+. ..+.|+++|.-.
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~ 139 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASLA 139 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence 99999998643211 11 22345566654444 44444432 345677776543
No 281
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.056 Score=49.58 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.++|.|+||+|.+|++++..|+..+. +|++++++.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999998887 899999875
No 282
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.32 E-value=0.022 Score=55.46 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..++|+|||. |.+|+.+|..|..-|. +|+.+|....... +... . +. . .++.+.+++||+|++..-.
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~-~----~~-~---~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKEL-G----AE-Y---RPLEELLRESDFVSLHVPL 214 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHc-C----CE-e---cCHHHHHhhCCEEEEeCCC
Confidence 4579999999 9999999999987776 8999998642111 1111 1 11 1 3577889999999998522
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 167 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~ 167 (356)
.+ .+..++-+ +.+....|++++||++ ..+|.-
T Consensus 215 --t~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~~ 248 (333)
T PRK13243 215 --TK---------ETYHMINE--ERLKLMKPTAILVNTARGKVVDTK 248 (333)
T ss_pred --Ch---------HHhhccCH--HHHhcCCCCeEEEECcCchhcCHH
Confidence 11 11112211 2333334789999986 566644
No 283
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.31 E-value=0.038 Score=58.70 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh--CCCcEEE
Q 018433 40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVI 117 (356)
Q Consensus 40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVI 117 (356)
+..+.|||.|+||+|++|++++..|...+. ++... .. |+.+. ..+...+ .+.|+||
T Consensus 376 ~~~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~------------~~v~~~i~~~~pd~Vi 433 (668)
T PLN02260 376 PGKPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDR------------SSLLADIRNVKPTHVF 433 (668)
T ss_pred CCCCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccH------------HHHHHHHHhhCCCEEE
Confidence 344568999999999999999999988775 54211 10 11110 0011222 2689999
Q ss_pred EcCCCCCCC--C---CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433 118 IPAGVPRKP--G---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160 (356)
Q Consensus 118 i~ag~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~ 160 (356)
.+|+....+ + ....+....|+.....+++.+++... .++++
T Consensus 434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~ 479 (668)
T PLN02260 434 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNF 479 (668)
T ss_pred ECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEE
Confidence 998764322 1 23456678999999999999998754 34444
No 284
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.31 E-value=0.048 Score=50.13 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=65.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~ 111 (356)
+++.|+||+|.+|.+++..|+..|. ++++.|++. ......++.+.. ..+..+. .-+|. ++. +.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999998887 999999876 233333343321 1121111 11221 111 23
Q ss_pred CCcEEEEcCCCCCC-C--CC---cHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK-P--GM---TRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~--g~---~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
..|+||..+|.... + .. +-...+..|......+.+.+.++. ..+.|+++|.
T Consensus 86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 145 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS 145 (254)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 57999999986321 1 11 122345666555555555544432 3456666654
No 285
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=96.31 E-value=0.071 Score=48.68 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=64.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhhC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al~ 111 (356)
++|.|+||+|.+|+.++..|+..|. +|++++++. ......++.... ..+.... .-+|. .+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3799999999999999999998887 899999876 222222222211 1222211 11222 23356
Q ss_pred CCcEEEEcCCCCCC-CC--Cc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK-PG--MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~g--~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN 162 (356)
+.|+||..+|.... +. .+ -...+..|......+.+.+ ++.. ...++++|.
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss 137 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS 137 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence 78999999876321 11 11 1233455666555555544 3333 335555554
No 286
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.099 Score=48.22 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------C
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~ 111 (356)
..++.|+||+|.+|+.++..|+..|. ++++++.+. ......++... ...+..+.. -+| ..+++ .
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999887 899999875 22222223221 112222111 122 22222 3
Q ss_pred CCcEEEEcCCCCCC-C--C---CcHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK-P--G---MTRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~--g---~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
..|+||..+|.... + . ......+..|+.....+.+.+..+. ..+.++++|.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS 141 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS 141 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 56999999886321 1 1 1123345667666655555544332 3455666544
No 287
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.066 Score=49.80 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=64.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------C
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~ 111 (356)
++|.|+||+|.+|+.++..|+..|. +|++.|++. +.....++.... ..+..+. ..+|. .+.+ .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999887 899999875 222233343321 1222111 11222 2222 3
Q ss_pred CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP 163 (356)
..|+||..+|..... ..+ -...+..|.... +.+.+.+++.. .+.|+++|.-
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~ 137 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM 137 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence 689999998864211 111 122345564433 44444444433 3566666543
No 288
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.30 E-value=0.013 Score=49.14 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 49999999 9999999999998886 5999999875
No 289
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.019 Score=54.51 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH--HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~--~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.++|+|+|. |.+|..++..|...++...++=+|.+... ..+ +++.+. . ......++.++||+||++.
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~--------~-~~~~~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDE--------L-TVAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccc--------c-ccchhhhhcccCCEEEEec
Confidence 469999998 99999999999999984444444443211 111 111111 0 0112247789999999984
No 290
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.29 E-value=0.024 Score=54.34 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
...+|+|||.+|.||..++..|...+. ++.+++... .++.+..+.||+||.+.|.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 456999999966999999999998887 888887531 2467888999999999876
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV 164 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv 164 (356)
|. .-..++ ..|.++||.++ |++
T Consensus 213 ~~---~v~~~~-----------------ik~GaiVIDvgin~~ 235 (301)
T PRK14194 213 PR---LIDADW-----------------LKPGAVVIDVGINRI 235 (301)
T ss_pred hh---cccHhh-----------------ccCCcEEEEeccccc
Confidence 52 111111 44889998886 764
No 291
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.29 E-value=0.12 Score=47.84 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hh------hC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------LT 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a------l~ 111 (356)
..+|.|+||+|.+|..++..|+..|. +|++++++. ......++.. ...+..+. .-+|.+ +. +.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 45899999999999999999999887 899999875 2222222311 11222221 112221 11 24
Q ss_pred CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP 163 (356)
..|+||.++|...... .+ -...+..|......+.+.+.++ .+.+.+++++..
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 140 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST 140 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 6799999998643211 11 1234556766666666555443 233566666553
No 292
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.29 E-value=0.014 Score=52.03 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVII 118 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi 118 (356)
+.+++.|+||+|.+|..++..|+..+. ++++++++. +.....++.+.. ...+.... ...++.++++++|+||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 446999999889999999999988775 899999865 222333333211 12222211 11233578899999888
Q ss_pred cCCC
Q 018433 119 PAGV 122 (356)
Q Consensus 119 ~ag~ 122 (356)
+...
T Consensus 104 at~~ 107 (194)
T cd01078 104 AGAA 107 (194)
T ss_pred CCCC
Confidence 7543
No 293
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.26 E-value=0.12 Score=47.43 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------- 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------- 111 (356)
..+|.|+||+|.+|..++..|+..|. ++++.+.++ ......++.... ..+..+.. -+| ++.+++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999887 788888876 222233343221 12222111 122 222332
Q ss_pred CCcEEEEcCCCCCCCC-----CcHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 018433 112 GMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS 161 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~t 161 (356)
..|+||..+|...... .+-...+..|......+.+...++. ..+.++++|
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 5799999998532221 1122345667665555555544332 234555554
No 294
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.26 E-value=0.14 Score=46.79 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=63.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTG 112 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~ 112 (356)
++.|+||+|.+|..++..|+..|. ++++++.+. ......++.... ..+..+.. -+|. .++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999998887 899999875 222223333221 22222211 1222 122 235
Q ss_pred CcEEEEcCCCCCC-C--CCcHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 018433 113 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 113 aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~t 161 (356)
.|+||..+|.... + +.+.. ..+..|... ++.+.+.+++....+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 6999999886321 1 22222 234455543 344455555544446666554
No 295
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.26 E-value=0.1 Score=47.19 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------ 110 (356)
.++|.|+||+|.+|+.++..|+..|. ++++...+.. .....++.... ..+..+. .-+| +.+++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998887 7767665542 12222232211 1222211 0112 11222
Q ss_pred -CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433 111 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 163 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP 163 (356)
.+.|.||..+|..... ..+. ...+..|......+.+.+.++. +...++++|..
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~ 143 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV 143 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3689999998864321 1112 2234567776666766666543 23456666543
No 296
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.26 E-value=0.086 Score=48.87 Aligned_cols=154 Identities=13% Similarity=0.161 Sum_probs=81.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~ 111 (356)
+++.|+||+|.+|.+++..|+..|. ++++.|.+. ......++.... .++..+. .-+|. +++ +.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4799999999999999999998887 889998875 222333343221 1222211 11222 112 23
Q ss_pred CCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433 112 GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 181 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~ 181 (356)
..|++|..+|.... + ..+ -...+..|..... .+.+.+.+ ...+.|++++...... +.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~------------~~ 153 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSEL------------GR 153 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccccC------------CC
Confidence 47999999886321 1 111 1223344554333 34444433 3456777776654321 22
Q ss_pred CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+....++.+...-..+-+.+++.++ +..|++..+
T Consensus 154 ~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v 187 (265)
T PRK07097 154 ETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI 187 (265)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence 2333445543333345566666653 344544433
No 297
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.26 E-value=0.048 Score=48.06 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=29.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.+|+.++..|+..|. .+++|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899999 9999999999998886 4899999875
No 298
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.24 Score=45.32 Aligned_cols=156 Identities=18% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA 109 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a 109 (356)
.+.+.|+||+|.+|.+++..|+..|. ++++.+... ......++.... .....+. .-+|. .+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcC--CceEEEecccCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999887 788875432 222333333211 1111100 00111 111
Q ss_pred ------hCCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 018433 110 ------LTGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK 176 (356)
Q Consensus 110 ------l~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~ 176 (356)
....|++|..+|.... + ..+ -...+..|+.....+.+.+...- ..+.||++|.-....
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 150 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--------- 150 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc---------
Confidence 1268999999986321 1 111 13344566655555555444332 346777776543221
Q ss_pred HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+.|..-.++.+......+-+.++..++ +..|++..+
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~girvn~v 186 (252)
T PRK12747 151 ---SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI 186 (252)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCEEEEE
Confidence 122222344444444456666777664 344544333
No 299
>PRK07574 formate dehydrogenase; Provisional
Probab=96.24 E-value=0.036 Score=55.07 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
...++|+|||. |.+|..+|..|..-|. +|+.+|+...... ..... .+.. ..++++.++.||+|++...
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCC
Confidence 34579999999 9999999999986666 9999998652111 11110 1221 1357889999999999853
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 167 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~ 167 (356)
.. ..+-.++- .+.+....|.+++||++ ..+|.-
T Consensus 258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~ 292 (385)
T PRK07574 258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRD 292 (385)
T ss_pred CC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHH
Confidence 21 11222221 23333345789999986 555544
No 300
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.23 E-value=0.0062 Score=55.58 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=66.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chhHHHH---HhcCCC-------CCeEEEEeCCCChhh
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTAD---ISHMDT-------GAVVRGFLGQPQLEN 108 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------~~g~~~d---l~~~~~-------~~~v~~~~~t~d~~~ 108 (356)
-||+|+|. |.+|+..|..++..|+ ++.|||+.+ ++....| |+.... ...+..++++++++|
T Consensus 4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 49999998 9999999999999999 999999987 2222223 332210 011222446788888
Q ss_pred hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433 109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 167 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~ 167 (356)
..++|=.|=.+ +-+-+..-+.+.+++.+.. |.. |..|.....+
T Consensus 81 ~vk~Ai~iQEc--------------vpE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~m 124 (313)
T KOG2305|consen 81 LVKGAIHIQEC--------------VPEDLNLKKQLYKQLDEIADPTT--ILASSTSTFM 124 (313)
T ss_pred HHhhhhhHHhh--------------chHhhHHHHHHHHHHHHhcCCce--EEeccccccC
Confidence 88887443223 1234455667777888776 444 3455554444
No 301
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.23 E-value=0.023 Score=53.04 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=45.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||+ |.+|+.++..|...++ ...+.++|.+... +..+.+.. ..+.. .++..++++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~---~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRI---AKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceE---eCCHHHHHHhCCEEEEEe
Confidence 58999999 9999999999988764 3456778875421 22222211 11222 235567789999999985
No 302
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.22 E-value=0.048 Score=52.31 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 111 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------ 111 (356)
.++|.|+||+|.+|.+++..|+..|. +|++++++. ......++... ...+..+. .-+| .+++++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45799999999999999999998886 899999875 22223333211 11222211 1122 222222
Q ss_pred -CCcEEEEcCCCCCC----CCCc---HHHHHHHHHHHHHHH----HHHHHHhCC-CcEEEEec
Q 018433 112 -GMDLVIIPAGVPRK----PGMT---RDDLFNINAGIVRTL----CEGIAKCCP-NATVNLIS 161 (356)
Q Consensus 112 -~aDiVIi~ag~~~~----~g~~---r~~~~~~N~~i~~~i----~~~i~~~~p-~a~viv~t 161 (356)
..|++|..||.... ...+ ....+..|......+ .+.+.+... .+.|+++|
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 48999999985321 1122 223455666544444 444444332 34666665
No 303
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.064 Score=49.71 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=59.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
+++.|+||+|.+|.+++..|+..|. +++++|.+........ .+.. ...+.. .....+..+.+...|++|..||..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 4899999999999999999999887 8999998752111111 1111 111111 111123345567899999999864
Q ss_pred CCCCCc---HHHHHHHHHHHHHHHHHHHH
Q 018433 124 RKPGMT---RDDLFNINAGIVRTLCEGIA 149 (356)
Q Consensus 124 ~~~g~~---r~~~~~~N~~i~~~i~~~i~ 149 (356)
.....+ -.+.+..|......+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 119 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLELFE 119 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222222 23445667655555554433
No 304
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.22 E-value=0.052 Score=52.42 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..++|+|+|. |.+|..+|..|..-|. +|+.+|...... . .+..+....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----~------~~~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----P------GVQSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----C------CceeecccccHHHHHhcCCEEEECCCC
Confidence 4469999999 9999999999986676 899999753110 0 000111124678999999999997521
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS 166 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~ 166 (356)
. ..|..++- .+.+.+..|++++||++ .=+|.
T Consensus 201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred C-----------HHHHHHhH--HHHHhcCCCCcEEEECCCccccCH
Confidence 1 12222221 23444455889999986 44443
No 305
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.21 E-value=0.25 Score=46.04 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l 110 (356)
.+++.|+||+|.+|.+++..|+..|. .|+++|++. ......++.+.. ..+..+.. -+| ..++ +
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999998887 899999875 233333343221 12222111 112 1112 2
Q ss_pred CCCcEEEEcCCC
Q 018433 111 TGMDLVIIPAGV 122 (356)
Q Consensus 111 ~~aDiVIi~ag~ 122 (356)
...|++|..+|.
T Consensus 86 g~id~li~~ag~ 97 (278)
T PRK08277 86 GPCDILINGAGG 97 (278)
T ss_pred CCCCEEEECCCC
Confidence 468999999885
No 306
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.15 Score=46.84 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al------- 110 (356)
.+++.|+||+|.+|..++..|+..|. +|++.+++. ......++.+.. ..+..+. .-+|. ++++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 34899999999999999999999887 899999876 333333443321 1222211 11221 2222
Q ss_pred CCCcEEEEcCCCCC--CC--CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 111 TGMDLVIIPAGVPR--KP--GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 111 ~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
...|++|..+|... .+ ..+ -...+..|.. ..+...+.+.+. ..+.|++++...... .
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~ 149 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A 149 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence 36799999998631 22 122 2334566664 344445555443 345666665432110 1
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+.+..-.++.+......+-+.+++.++ +..|++..+
T Consensus 150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 185 (254)
T PRK07478 150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL 185 (254)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence 233333455544334456666677664 344544433
No 307
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.074 Score=48.77 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=47.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCC---ChhhhhC-CCcEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQP---QLENALT-GMDLVI 117 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~-~aDiVI 117 (356)
++|.|+||+|.+|+.++..|+..|. .+++.+.+. ......+..... ..+.... .-+ ++..++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3799999999999999999999887 888888765 111111111111 1122111 112 2333444 899999
Q ss_pred EcCCCC
Q 018433 118 IPAGVP 123 (356)
Q Consensus 118 i~ag~~ 123 (356)
..+|..
T Consensus 79 ~~ag~~ 84 (257)
T PRK09291 79 NNAGIG 84 (257)
T ss_pred ECCCcC
Confidence 999865
No 308
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.20 E-value=0.019 Score=54.95 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=45.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|||. |.+|+.++..|...++ ++..+|+++. +.++.... ... ..+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 58999999 9999999999999887 8889998651 12232211 111 134567789999999974
No 309
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.031 Score=52.68 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
++||++||+ |++|..++..|...+ + ..+|+..|.++... .++.... +... ++|..++..++|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~-g~~~-----~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEY-GVVT-----TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence 479999999 999999999999887 2 36888888765211 1233321 1111 345568889999999985
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
|| ..+.++...++...++-.||-+.-.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 33 236677777776445666665555443
No 310
>PRK08264 short chain dehydrogenase; Validated
Probab=96.19 E-value=0.073 Score=48.25 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhh---CCCcEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL---TGMDLV 116 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al---~~aDiV 116 (356)
.++|.|+||+|.+|+.++..|+..|. .+|++++++...... . ...+..+. ...++++.+ ...|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~-----~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD-----L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh-----c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999998774 378889886521111 1 11111111 112223333 357999
Q ss_pred EEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433 117 IIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 186 (356)
Q Consensus 117 Ii~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv 186 (356)
|.++|.....+ .+ -...+..|......+.+.+.+. ...+.++++|...... +.+....
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------~~~~~~~ 145 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV------------NFPNLGT 145 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc------------CCCCchH
Confidence 99998732111 11 1233456666666666655432 2345677666544221 2233333
Q ss_pred EEechhhHHHHHHHHHHHh
Q 018433 187 LGVTMLDVVRANTFVAEVL 205 (356)
Q Consensus 187 iG~t~ld~~R~~~~la~~l 205 (356)
+|.+......+-..++..+
T Consensus 146 y~~sK~a~~~~~~~l~~~~ 164 (238)
T PRK08264 146 YSASKAAAWSLTQALRAEL 164 (238)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4444333334555556655
No 311
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.18 E-value=0.24 Score=45.52 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l 110 (356)
.++|.|+||+|.+|++++..|+..|. +++++|.+. ......++.+.. ..+..+. .-+|. .++ +
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999998887 889999865 222333343321 1111111 11222 122 2
Q ss_pred CCCcEEEEcCCCCCC--CCCcHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRK--PGMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~--~g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
...|++|..+|.... ...+.. ..+..|+.....+.+.+..+ ...+.++++|.
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 146 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 357999999885321 122222 23566766666566555432 23345666654
No 312
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.5 Score=43.56 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=47.6
Q ss_pred CCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433 44 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 110 (356)
Q Consensus 44 ~~KI~IIGa~G-~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------ 110 (356)
.+++.|+||+| .+|..++..|+..|. +|++.|.+. ......++........+..+.. -+| .++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35899999977 599999999998887 799999865 2222233332111112322211 112 22222
Q ss_pred -CCCcEEEEcCCCC
Q 018433 111 -TGMDLVIIPAGVP 123 (356)
Q Consensus 111 -~~aDiVIi~ag~~ 123 (356)
...|++|..+|..
T Consensus 95 ~g~id~li~~ag~~ 108 (262)
T PRK07831 95 LGRLDVLVNNAGLG 108 (262)
T ss_pred cCCCCEEEECCCCC
Confidence 3679999999864
No 313
>PLN02712 arogenate dehydrogenase
Probab=96.18 E-value=0.029 Score=59.70 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=46.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh-CCCcEEEE
Q 018433 40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVII 118 (356)
Q Consensus 40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi 118 (356)
+..+++||+|||. |.+|..++..|...|. +|+.+|.+.....+.+ . . +.. .+|+.+.+ ++||+||+
T Consensus 48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~---~--G--v~~---~~d~~e~~~~~aDvViL 114 (667)
T PLN02712 48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARS---L--G--VSF---FLDPHDLCERHPDVILL 114 (667)
T ss_pred ccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH---c--C--CEE---eCCHHHHhhcCCCEEEE
Confidence 3455689999998 9999999999988876 8999998742211111 1 1 122 23555544 57999999
Q ss_pred cC
Q 018433 119 PA 120 (356)
Q Consensus 119 ~a 120 (356)
+.
T Consensus 115 av 116 (667)
T PLN02712 115 CT 116 (667)
T ss_pred cC
Confidence 84
No 314
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.067 Score=49.19 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=63.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhhC-------
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT------- 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~------- 111 (356)
.++.|+||+|.+|..++..|+..+. +|+++|++. ......++... .+..+. .-.|. ..++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGDA----RFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC----ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999998886 899999875 22222333211 111110 11222 22332
Q ss_pred CCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
..|+||..+|...... .+. ...+..|......+.+.+... ...+.++++|.
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 136 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS 136 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 4799999988632211 111 122345655555555555322 23455666655
No 315
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.43 Score=43.28 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.++|.|+||+|.+|.+++..|+..|. .|++++++.
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 345899999999999999999998887 899999876
No 316
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.075 Score=48.69 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=65.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~ 111 (356)
.+|.|+||+|.+|.+++..|+..|. .|+++|++. ......++.+.. .....+. .-+|. +++ +.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998887 899999875 233333343321 1111111 11222 122 23
Q ss_pred CCcEEEEcCCCCC--CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 112 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
..|++|..+|... .+ ..+. ...+..|......+.+.+.++. ..+.+++++.
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 145 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVAS 145 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECc
Confidence 5799999887421 11 1222 2345566665555554443332 3456666654
No 317
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.15 E-value=0.46 Score=43.77 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEE-eCCCChh---hh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGF-LGQPQLE---NA------- 109 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~-~~t~d~~---~a------- 109 (356)
.+++.|+||+|.+|..++..|+..+. .+++.+.+. ......++.... ..+..+ ..-+|.+ +.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998886 777776643 222223333221 122211 1112321 11
Q ss_pred hCCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 110 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
+...|++|..+|..... ..+. ...+..|+.. .+.+.+.+.+....+.++++|.-... .
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~------------~ 150 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ------------I 150 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc------------C
Confidence 23579999998864221 1112 2234556443 34455555555555677766542211 1
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG 218 (356)
+.|..-.++.+......+-+.++..+. +..|++.++.
T Consensus 151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v~ 187 (261)
T PRK08936 151 PWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVNNIG 187 (261)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEEE
Confidence 233333455543333345555666553 3455554443
No 318
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.15 E-value=0.21 Score=45.54 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=62.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------- 110 (356)
+++.|+||+|.+|..++..|+..|. ++++. +.+. ......++.... ..+..+.. -+| ...++
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999886 76654 4443 222223333221 12222111 112 22223
Q ss_pred CCCcEEEEcCCCCC-CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPR-KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
...|+||..+|... .+ ..+. ...+..|......+++.+.++. +.+.|+++|.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS 141 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS 141 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 25899999987532 11 1111 1234456655555555555432 3456666664
No 319
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.25 Score=45.43 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=81.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-----
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMDTGAVVRGFL-GQPQ---LENA----- 109 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a----- 109 (356)
+++.|+||+|.+|.+++..|+..|. ++++++.+. ......++.... ..+..+. .-+| .+++
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 5899999999999999999998887 766665432 111222232211 1222211 0122 2222
Q ss_pred --hCCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHHhC
Q 018433 110 --LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 110 --l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~~~~ 179 (356)
+...|++|..+|..... ..+ -...+..|......+.+.+.... +.+.++++ +.-....
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~------------ 152 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF------------ 152 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc------------
Confidence 23679999999864211 112 22345567666555555554432 34444443 3322211
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.|....++.+......+-+.+++.++ +..|++..+
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v 187 (257)
T PRK12744 153 -TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV 187 (257)
T ss_pred -CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence 12223456654445567778888875 444544444
No 320
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.14 E-value=0.05 Score=45.99 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=29.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899999 9999999999999887 4899999874
No 321
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.037 Score=50.97 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+..+|.|+||+|.+|.+++..|+..|. +++++|++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346899999999999999999998887 899999875
No 322
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.13 E-value=0.05 Score=51.25 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=62.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-CCcEEEEcCCCCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK 125 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~~~ 125 (356)
|+|+|++|+||+++...|...++ +|..+-++...... ..+ ..+... +.+.+... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~----~~v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLH----PNVTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcC----cccccc---chhhhcccCCCCEEEECCCCccc
Confidence 68999999999999999999988 88888876522111 111 111111 11223233 79999999998742
Q ss_pred CC---Cc-HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 018433 126 PG---MT-RDDLFNINAGIVRTLCEGIAKCCPNA 155 (356)
Q Consensus 126 ~g---~~-r~~~~~~N~~i~~~i~~~i~~~~p~a 155 (356)
.. .. -..+...-+...+.+.+.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 22 11 22344455677788888888766444
No 323
>PRK06398 aldose dehydrogenase; Validated
Probab=96.12 E-value=0.03 Score=51.88 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh-------hCCCcEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDLV 116 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-------l~~aDiV 116 (356)
.+++.|+||+|.+|.+++..|+..|. +|+++|+++.......... .++. ...+.+++ +...|++
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~----~D~~---~~~~i~~~~~~~~~~~~~id~l 76 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFK----VDVS---NKEQVIKGIDYVISKYGRIDIL 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEE----ccCC---CHHHHHHHHHHHHHHcCCCCEE
Confidence 35899999999999999999999887 8999998652110000000 0110 01112222 3468999
Q ss_pred EEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEE
Q 018433 117 IIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 187 (356)
Q Consensus 117 Ii~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kvi 187 (356)
|..+|.+.. + ..+ -...+..|......+.+.+.++ ...+.||++|.-... .+.+..-.+
T Consensus 77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y 144 (258)
T PRK06398 77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF------------AVTRNAAAY 144 (258)
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc------------cCCCCCchh
Confidence 999986421 1 112 2233556665544444443322 245667766542211 123333445
Q ss_pred EechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433 188 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218 (356)
Q Consensus 188 G~t~ld~~R~~~~la~~l~v~~~~v~~~viG 218 (356)
+.+......+-+.++..++ +. |++..+.
T Consensus 145 ~~sKaal~~~~~~la~e~~--~~-i~vn~i~ 172 (258)
T PRK06398 145 VTSKHAVLGLTRSIAVDYA--PT-IRCVAVC 172 (258)
T ss_pred hhhHHHHHHHHHHHHHHhC--CC-CEEEEEe
Confidence 5543333445666677664 33 6544443
No 324
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.27 Score=45.17 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------ 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al------ 110 (356)
.++|.|+||+|.+|+.++..|+..+. + |+++|++. ......++... ...+..+. .-+|. .+++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998876 5 99999875 22222233221 12222111 11222 1222
Q ss_pred -CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433 111 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 162 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN 162 (356)
.+.|+||.++|..... ..+. ...+..|+.-...+.+. +.+....+.++++|.
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 3689999999865321 1122 22345565544444443 333333456666654
No 325
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.10 E-value=0.13 Score=47.37 Aligned_cols=154 Identities=17% Similarity=0.135 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------- 110 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al------- 110 (356)
+.+++.|+||+|.+|++++..|+..|. +|+++|+++ ......++.... ..+..+. .-+|. .+++
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 345899999999999999999999887 899999875 222222332211 1221110 11222 2222
Q ss_pred CCCcEEEEcCCCCC--CC--CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 111 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 111 ~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
...|++|..+|... .+ ..+. ...+..|+. ..+.+.+.+.+.. .+.|+++|.....
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~------------- 148 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATR------------- 148 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCcccc-------------
Confidence 36799999987431 11 1121 222344443 3445555555432 3566666543210
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+ +..-.++.+......+-+.++..+. +..|++..+
T Consensus 149 ~-~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 183 (260)
T PRK12823 149 G-INRVPYSAAKGGVNALTASLAFEYA--EHGIRVNAV 183 (260)
T ss_pred C-CCCCccHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence 0 0112345544334456666777663 344544433
No 326
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.1 Score=49.59 Aligned_cols=116 Identities=23% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l 110 (356)
.++|.|+||+|.+|.+++..|+..|. +|++++++. ......++........+..+.. -+|. +++ +
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 35899999999999999999999887 899999875 2222223332111112222111 1222 111 2
Q ss_pred CCCcEEEEcCCCCCCCC----CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKPG----MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g----~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
...|+||..||....+. ..-...+..|... .+.+.+.+++. ..+.|+++|.
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS 152 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSS 152 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence 35899999998532111 1112234555544 55666666543 3456777664
No 327
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.08 E-value=0.035 Score=53.01 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
....+|+|+|+ |.+|..++..|...|. +|+++|++... . ........ ..+. ..++.+.++++|+||.+..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~-~-~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD-L-ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH-H-HHHHHCCC-eeec----HHHHHHHhccCCEEEECCC
Confidence 34569999999 9999999999988776 89999987521 1 11111111 1111 2356778899999999852
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCcc
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNST 167 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~ 167 (356)
.+ ++ + . +.+....|++++|++ ++|-.+-
T Consensus 219 ~~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 219 AL---------VL--T----A---DVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred hH---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCCC
Confidence 11 01 1 1 123333468888887 5887754
No 328
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.08 E-value=0.086 Score=48.03 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=30.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus 29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 38999999 9999999999999887 4899999883
No 329
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.06 E-value=0.044 Score=50.74 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.+++.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999998887 899999875
No 330
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.032 Score=50.78 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhh---CCCcEEEEc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL---TGMDLVIIP 119 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al---~~aDiVIi~ 119 (356)
.+++.|+||+|.+|..++..|+..+. +|++++++... ..++.+......+.. .....+..+++ ...|+||..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 45899999999999999999998887 89999986511 111211100011111 10011222333 347999999
Q ss_pred CCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecC
Q 018433 120 AGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC----PNATVNLISN 162 (356)
Q Consensus 120 ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tN 162 (356)
+|..... ..+ -...+..|+.....+.+.+.+.. ..+.|+++|.
T Consensus 85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 8864211 111 22344567766666666665432 2356666654
No 331
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.06 E-value=0.027 Score=52.21 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.+++.|+||+|.+|..++..|+..|. ++++.|.+.
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35799999999999999999999887 899999875
No 332
>PRK08219 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.058 Score=48.33 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCe-EEE-EeCCCChhhhhC---CCcEEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VRG-FLGQPQLENALT---GMDLVII 118 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~al~---~aDiVIi 118 (356)
+++|.|+||+|.+|+.++..|+.. . +++++|++... ..++.+...... +.. .....++.++++ +.|+||.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 358999999999999999999877 4 89999986511 111211100011 111 000123334444 5899999
Q ss_pred cCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433 119 PAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 162 (356)
Q Consensus 119 ~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN 162 (356)
++|...... .+ ....+..|......+.+.+.+.. -...++++|.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss 129 (227)
T PRK08219 78 NAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINS 129 (227)
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 988643111 11 22334565655444444433321 1345555553
No 333
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.05 E-value=0.029 Score=54.64 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..++|+|||. |.+|..+|..|+. +..-+|+.+|....... .. .+. ..+++++++++||+|++..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHM 208 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence 4579999999 9999999999853 33348999997642111 11 111 1246788999999999985
No 334
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.05 E-value=0.2 Score=46.14 Aligned_cols=114 Identities=15% Similarity=0.220 Sum_probs=65.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TGM 113 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~a 113 (356)
..+.|+|++|.+|.+++..|+..|. +|+++|.........++.... ..+..+. .-+| .++.+ ...
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGHI 86 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999887 888888765322223333221 1222111 1122 22222 368
Q ss_pred cEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433 114 DLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 162 (356)
Q Consensus 114 DiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN 162 (356)
|++|..+|.... + ..+ -...+..|......+.+. +.+..+.+.++++|.
T Consensus 87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 999999986421 1 111 233455666554444444 433334577777654
No 335
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.14 Score=49.64 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l 110 (356)
.++|.|+||+|.+|..++..|+..|. +|+++++++ +.....++.... ..+..+. .-+| .+++ +
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 35899999999999999999999887 899999876 233333443221 1222111 1122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCcH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP---GMTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
...|++|..+|..... ..+. ...+..| +...+.+.+.+.+. ..+.||+++.
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS 144 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS 144 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 3689999998863211 1111 1223333 34445555555543 3456666654
No 336
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.04 E-value=0.053 Score=49.54 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=66.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
|||+|||. |.+|..+.-.+.... .+.-+.++|.+..+ +..+......+. .+++.+.+.+.|++|.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 69999998 999999988877653 45677888987522 222222211111 1356676799999999986
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
.+.+++++.++-+.+.|.+|+-++--+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 3457899999998888988776654444
No 337
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.03 E-value=0.051 Score=52.08 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=54.8
Q ss_pred hhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhh
Q 018433 30 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN 108 (356)
Q Consensus 30 ~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~ 108 (356)
.+..+..+........||+|+|+ |.+|..++..|...|. +|..+|++. ....+.+ .. .... ...++.+
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~---~G--~~~~---~~~~l~~ 206 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITE---MG--LSPF---HLSELAE 206 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH---cC--Ceee---cHHHHHH
Confidence 45555544444556789999999 9999999999987775 999999975 2222221 11 1111 1235667
Q ss_pred hhCCCcEEEEcC
Q 018433 109 ALTGMDLVIIPA 120 (356)
Q Consensus 109 al~~aDiVIi~a 120 (356)
.++++|+||.+.
T Consensus 207 ~l~~aDiVI~t~ 218 (296)
T PRK08306 207 EVGKIDIIFNTI 218 (296)
T ss_pred HhCCCCEEEECC
Confidence 889999999985
No 338
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.03 E-value=0.035 Score=53.96 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.++|+|||+ |..|...+..+.....+.+|.++|++. ++..+.++.+.. ...+.. ..|+++++++||+||.+..
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence 458999999 888888777776533467999999876 344444444321 123332 3578899999999988753
No 339
>PRK06196 oxidoreductase; Provisional
Probab=96.02 E-value=0.1 Score=49.95 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhh-------hCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENA-------LTGM 113 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a-------l~~a 113 (356)
.++|.|+||+|.+|.+++..|+..|. +|++.+++. ......++..... ..++.. ..+.+++ +...
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d---~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLAD---LESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC---HHHHHHHHHHHHhcCCCC
Confidence 35899999999999999999999887 899999875 2222222221110 011110 0111111 2468
Q ss_pred cEEEEcCCCCCCCC----CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 114 DLVIIPAGVPRKPG----MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 114 DiVIi~ag~~~~~g----~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
|++|..+|....+. ......+..|... .+.+.+.+.+. ..+.|+++|.
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS 156 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSS 156 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECC
Confidence 99999998642211 1122334555544 55555555543 3466777764
No 340
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.02 E-value=0.052 Score=58.42 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=59.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
.||+|||+ |.+|..++..+...++..+|+.+|.++.. ..+.+ ... ... ..+++.+++.++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~---~g~--~~~---~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS---LGV--IDR---GEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH---CCC--CCc---ccCCHHHHhcCCCEEEECCCH-
Confidence 58999999 99999999999988754579999997621 12221 111 111 134667889999999998531
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 161 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t 161 (356)
..+.++.+.+.++. ++.+|+.++
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 12445555565554 455555443
No 341
>PLN03139 formate dehydrogenase; Provisional
Probab=96.01 E-value=0.049 Score=54.11 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
...++|+|||. |.+|..++..|..-|. +|+.+|......... .+. .+.. ..++++.+++||+|++..
T Consensus 197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l- 263 (386)
T PLN03139 197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT- 263 (386)
T ss_pred CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC-
Confidence 45679999999 9999999999986665 899999864211111 111 1111 246788999999999975
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 167 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~ 167 (356)
|.. ..+-.++- .+.+....|++++||++ ..+|.-
T Consensus 264 -Plt---------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~ 299 (386)
T PLN03139 264 -PLT---------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMDTQ 299 (386)
T ss_pred -CCC---------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhhHH
Confidence 211 11222221 23444445789999986 555543
No 342
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.01 E-value=0.0089 Score=55.77 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC----C-----CcEEEEEeCCC-c-hh------HHHHHhcCCCCCeEEEEeCCCCh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINP----L-----VSVLHLYDVVN-T-PG------VTADISHMDTGAVVRGFLGQPQL 106 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~----~-----~~el~L~D~~~-~-~g------~~~dl~~~~~~~~v~~~~~t~d~ 106 (356)
..||.|.|| |..|..++..|...+ + ...++++|..- . .+ .-..+.+.. ..-. ...|+
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~--~~~~---~~~~L 98 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA--NPER---ESGDL 98 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc--Cccc---ccCCH
Confidence 469999999 999999998776532 2 24899999875 1 11 011111010 1111 12578
Q ss_pred hhhhC--CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCC
Q 018433 107 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD 182 (356)
Q Consensus 107 ~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~--~~t~~~~~~~~~~~~~~ 182 (356)
.++++ ++|++|=+.+.| |. +.+++.+.|.+++++.+|+-.|||.. -.++ +-.++.+.
T Consensus 99 ~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t~-- 159 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTATE-- 159 (254)
T ss_pred HHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhcC--
Confidence 99999 999999877655 21 24588889999999999999999997 4443 33344331
Q ss_pred CCCEEEe
Q 018433 183 PKKLLGV 189 (356)
Q Consensus 183 ~~kviG~ 189 (356)
...+|++
T Consensus 160 G~ai~At 166 (254)
T cd00762 160 GRAIFAS 166 (254)
T ss_pred CCEEEEE
Confidence 2467777
No 343
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.2 Score=48.70 Aligned_cols=114 Identities=18% Similarity=0.071 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l 110 (356)
.++|.|+||+|.+|..++..|+..|. +|+++++++ +.....++.... ..+.... .-+| .+++ +
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999987 899999876 333333443321 1221110 1122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---C---CcHHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGIVRT----LCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tN 162 (356)
...|++|..+|..... . ++-...+..|...... ..+.+.+. ..+.+|+++.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS 143 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMIS 143 (330)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 4679999999864221 1 1122344555544433 34444433 3466666654
No 344
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.01 E-value=0.49 Score=43.66 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---h-------h
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---E-------N 108 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~ 108 (356)
+.++|.|+||++.+|.+++..|+..|. .|++.+... +.....++.... ...+..+. .-+|. + +
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999887 788875433 223333443211 11222211 11221 1 1
Q ss_pred hhCCCcEEEEcCCCCCC-----CC----Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433 109 ALTGMDLVIIPAGVPRK-----PG----MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 172 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~-----~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~ 172 (356)
.+...|++|..+|.... .+ .+ -...+..|+.. .+.+.+.+++. +.+.||++|...+..
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~----- 157 (260)
T PRK08416 84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV-GGGSIISLSSTGNLV----- 157 (260)
T ss_pred hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-CCEEEEEEecccccc-----
Confidence 23468999998874211 01 11 11223334333 34444444432 345677776543321
Q ss_pred HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433 173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 215 (356)
Q Consensus 173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~ 215 (356)
..|..-.++.+......+-+.++..++ +..|++.
T Consensus 158 -------~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v~ 191 (260)
T PRK08416 158 -------YIENYAGHGTSKAAVETMVKYAATELG--EKNIRVN 191 (260)
T ss_pred -------CCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEEE
Confidence 112222345555455566677777764 3444433
No 345
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.00 E-value=0.025 Score=57.58 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=59.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-CCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
+|+|||. |.+|.++|..|+..|. +|+++|++.. .+.++.+. .....+.......++.++++++|+||+..-
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~--~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~--- 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPE--KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK--- 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHH--HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence 4899999 9999999999999998 9999999762 22223321 101112222111223234567998888742
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC--CCCcc
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN--PVNST 167 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN--Pv~~~ 167 (356)
+|. .+.++...+..+- ++.+||..|| |.+..
T Consensus 73 -~~~-----------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~ 106 (467)
T TIGR00873 73 -AGA-----------PVDAVINQLLPLLEKGDIIIDGGNSHYPDTE 106 (467)
T ss_pred -CcH-----------HHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence 111 1223334444443 6778888876 44443
No 346
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.045 Score=51.15 Aligned_cols=34 Identities=15% Similarity=-0.058 Sum_probs=30.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.|.|+||+|.+|++++..|+..+. +|++.+.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 37 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT 37 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4799999999999999999998886 899999875
No 347
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.00 E-value=0.018 Score=52.57 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=57.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEEcCCCCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPAGVPR 124 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ag~~~ 124 (356)
|+|+||+|.+|+.++..|+..+. +|..+=++........+.+.. ..+-... ....+.++|+|+|.|+++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 78999999999999999998765 677766654222333444432 2221111 11346678999999999865332
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433 125 KPGMTRDDLFNINAGIVRTLCEGIAKCC 152 (356)
Q Consensus 125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~ 152 (356)
..+ .+....++++..+.+
T Consensus 77 ---~~~-------~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 77 ---PSE-------LEQQKNLIDAAKAAG 94 (233)
T ss_dssp ---CCH-------HHHHHHHHHHHHHHT
T ss_pred ---hhh-------hhhhhhHHHhhhccc
Confidence 112 233455666666665
No 348
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=95.98 E-value=0.33 Score=45.01 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=28.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 79 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~ 79 (356)
.+.|+||+|.+|.+++..|+..|. +|++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence 689999999999999999999887 88887543
No 349
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.12 Score=47.42 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l 110 (356)
.+++.|+||+|.+|..++..|+..|. +|++.|++. .+....++.+.. ..+..+. .-+| ..++ +
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34799999999999999999999887 899999876 233333333221 1222211 1122 1122 3
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLIS 161 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~t 161 (356)
...|++|..+|..... ..+ -...+..|+.....+.+. +.+....+.+++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999998864211 112 123345555544444444 43333345566654
No 350
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.98 E-value=0.09 Score=47.67 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=63.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC------
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT------ 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~------ 111 (356)
++|.|+||+|.+|..++..|+..+. ++++. +.+. .......+... ...+..... -+|. .+.++
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999998887 78887 8865 22222222221 122322211 1222 12222
Q ss_pred -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433 112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 162 (356)
Q Consensus 112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN 162 (356)
..|+||..+|..... ..+ -...+..|......+.+.+.... ....++++|.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS 142 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS 142 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 789999998864211 111 12345567666555555544332 1234555554
No 351
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=95.96 E-value=0.023 Score=53.66 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=60.6
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCCCCC
Q 018433 48 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK 125 (356)
Q Consensus 48 ~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~~~~ 125 (356)
.|+||+|++|++++..|+..+. +++++.... . .|+.+ ..++.+.++ ++|+||.+|+....
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~-~---~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~ 62 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK-E---LDLTR------------QADVEAFFAKEKPTYVILAAAKVGG 62 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC--cEEEeeccc-c---CCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence 3899999999999999988776 444443221 0 12211 123334444 57999999875321
Q ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433 126 ---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160 (356)
Q Consensus 126 ---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~ 160 (356)
......+.+..|......+++.+++.... .+|.+
T Consensus 63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~ 99 (306)
T PLN02725 63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFL 99 (306)
T ss_pred cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEe
Confidence 12234566789999999999999987543 34444
No 352
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.95 E-value=0.034 Score=53.96 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=50.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..+++|||+ |..|...+..+.......+|.++|++. ++..+.++.+. ...+.. ..|.++++++||+|+.+.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence 458999999 999988776665545578999999987 34444445432 223443 257789999999999864
No 353
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.95 E-value=0.11 Score=47.40 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-C---CCChhhhh-------CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-G---QPQLENAL-------TG 112 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~---t~d~~~al-------~~ 112 (356)
.+++.|+||+|.+|+.++..|+..|. +++++|.+.. .... ..+..+. . ..+..+.+ ..
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~~-------~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAFL-------TQED--YPFATFVLDVSDAAAVAQVCQRLLAETGP 76 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecchh-------hhcC--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35899999999999999999998887 8999998641 1000 1111110 0 11222222 34
Q ss_pred CcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 113 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 113 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
.|+||..+|..... ..+ -...+..|......+.+.+..+ ...+.++++|.
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss 135 (252)
T PRK08220 77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGS 135 (252)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 79999998864211 111 2234566666555555554332 23455666654
No 354
>PRK12743 oxidoreductase; Provisional
Probab=95.94 E-value=0.43 Score=43.88 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=64.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l 110 (356)
.+|.|+||+|.+|..++..|+..|. +|++++... ......++.... ..+..+. .-+|. +.+ +
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3799999999999999999999887 888876533 222223333221 1222211 11222 111 2
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP 163 (356)
...|+||..+|..... ..+ -...+..|......+.+.+.. ....+.|+++|.-
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 141 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSV 141 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence 3579999998864321 111 223455666555555544433 2234677777653
No 355
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.93 E-value=0.036 Score=45.99 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=45.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH-HHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~-~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||+|+|++|.+|+.++..+...+-..=+..+|.+. ..|. .-++.... ...+.. ++|+++.+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEcC
Confidence 699999999999999999998854332345667665 2221 12222222 122332 368889999999988763
No 356
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.93 E-value=0.054 Score=53.29 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=44.0
Q ss_pred HHhHHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 8 NQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
|....|.+-|++=|.+-.|.+ ++-++. ||+|+|+ |.+|+.++..|+..|+. +|.|+|.+.
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q-----~~L~~~------~VlivG~-GGlGs~~a~~La~~Gvg-~i~lvD~D~ 62 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQ-----QSLFDA------KVAVIGA-GGLGSPALLYLAGAGVG-HITIIDDDT 62 (355)
T ss_pred hHHHhHhhheechhhcCHHHH-----HHHhCC------eEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence 445556666666555554443 333444 9999999 99999999999988864 899999875
No 357
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.93 E-value=0.12 Score=46.72 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC----hhhhhCCCcEEEE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVII 118 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d----~~~al~~aDiVIi 118 (356)
.+++.|+||+|.+|.+++..|+..|. +++++|++.... . . ..+..... -+| ..+.+...|+||.
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~---~--~~~~~~~~D~~~~~~~~~~~~~~id~lv~ 73 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----L---S--GNFHFLQLDLSDDLEPLFDWVPSVDILCN 73 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----c---C--CcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence 35899999999999999999998887 899999875210 0 0 11111110 011 1123457899999
Q ss_pred cCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 119 PAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 119 ~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
.+|... .+ ..+ -...+..|......+.+.+... ...+.+++++.
T Consensus 74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 127 (235)
T PRK06550 74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS 127 (235)
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 988532 11 111 1234556665555555544332 23456666553
No 358
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.93 E-value=0.04 Score=52.25 Aligned_cols=146 Identities=24% Similarity=0.281 Sum_probs=88.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 122 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~ 122 (356)
|||.|+|++|++|+.+...|. .+. +++-.|..+ +|+.+.. ...+.++ .-|+||.+|.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 679999999999999988887 434 777777654 4444322 1223344 56999999987
Q ss_pred CCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC--CccHHHHHHHHHHhCCCCCCCEEEechhhHHHH
Q 018433 123 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA 197 (356)
Q Consensus 123 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv--~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~ 197 (356)
..- ...++..-+.-|......+++...++ .+++|-+| --| +.-. .-.++.---.|..++|-+.+....+
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhiSTDyVFDG~~~----~~Y~E~D~~~P~nvYG~sKl~GE~~ 134 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHISTDYVFDGEKG----GPYKETDTPNPLNVYGRSKLAGEEA 134 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHh--CCeEEEeecceEecCCCC----CCCCCCCCCCChhhhhHHHHHHHHH
Confidence 542 23446666789999999999999887 45555554 222 1100 0000000122556777765443321
Q ss_pred HHHHHHHhCCCCCCC---cccEEecccC
Q 018433 198 NTFVAEVLGLDPRDV---DVPVVGGHAG 222 (356)
Q Consensus 198 ~~~la~~l~v~~~~v---~~~viG~hg~ 222 (356)
.+..+ +..+ ..+++|++|.
T Consensus 135 ----v~~~~--~~~~I~Rtswv~g~~g~ 156 (281)
T COG1091 135 ----VRAAG--PRHLILRTSWVYGEYGN 156 (281)
T ss_pred ----HHHhC--CCEEEEEeeeeecCCCC
Confidence 22222 3333 5889999886
No 359
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.1 Score=47.42 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NAL------- 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~al------- 110 (356)
++++.|+|++|.+|..++..|+.+|. +|+++|++. ......++.... ..+..+. .-+|++ .++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 899999875 222222232211 1222111 112321 222
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP 163 (356)
...|+||..+|..... ..+ -...+..|+..... +.+.+.+. ..+.++++|..
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~ 143 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSSI 143 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEccH
Confidence 3589999999864321 111 12334555554444 33444433 24566666543
No 360
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.92 E-value=0.035 Score=54.22 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=49.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----c----------------hhH--HHHHhcCCCCCeEEEEe
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGV--TADISHMDTGAVVRGFL 101 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~----------------~g~--~~dl~~~~~~~~v~~~~ 101 (356)
.||+|||+ |.+|+.++..|+..|+ .+|.|+|.+. + +.. +..+........+..+.
T Consensus 25 ~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 25 KHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 38999999 9999999999999886 4999999874 1 001 11222222223343332
Q ss_pred C---CCChhhhhCCCcEEEEcC
Q 018433 102 G---QPQLENALTGMDLVIIPA 120 (356)
Q Consensus 102 ~---t~d~~~al~~aDiVIi~a 120 (356)
. ..+.++.++++|+||.+.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEcC
Confidence 1 134566789999999985
No 361
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.92 E-value=0.2 Score=45.68 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 109 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a------- 109 (356)
..+|.|+||+|.+|++++..|+..+. ++++...+. ......++.... ..+..+. .-++ ...+
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENG--GEGIGVLADVSTREGCETLAKATIDR 81 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcC--CeeEEEEeccCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998887 666654332 112222222111 1111110 0111 1112
Q ss_pred hCCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433 110 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 162 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 162 (356)
+...|+||.++|..... +.+. .+.+..|......+++.+.++- ..+.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 34679999999863211 1122 2334555555445555444432 2456666654
No 362
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.91 E-value=0.066 Score=52.97 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.||+|+|+ |.+|+.++..|+..|. .+|+++|.+.
T Consensus 42 ~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 48999999 9999999999998886 4999999874
No 363
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.89 E-value=0.052 Score=47.88 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
....+|+|+|. |.+|..+|..+..-|. +|+.+|....... ...+. .+.. .++++.++.||+|++..-
T Consensus 34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv~~~~p 100 (178)
T PF02826_consen 34 LRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIVSLHLP 100 (178)
T ss_dssp STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEEEE-SS
T ss_pred cCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhhhhhhc
Confidence 34569999999 9999999999986666 9999999762211 11111 1221 367889999999999753
Q ss_pred -CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433 122 -VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 122 -~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
.+...++-.. +.+.+..|++++||++-
T Consensus 101 lt~~T~~li~~--------------~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 101 LTPETRGLINA--------------EFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp SSTTTTTSBSH--------------HHHHTSTTTEEEEESSS
T ss_pred cccccceeeee--------------eeeeccccceEEEeccc
Confidence 2322233111 12233346889999874
No 364
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.87 E-value=0.04 Score=53.45 Aligned_cols=73 Identities=10% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
..+++|||+ |..|...+..++....+.+|.++|++. ....+.++.+. ....+..+ .|+++++++||+||.+..
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVTN 201 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEccC
Confidence 458999999 999987776665444457999999986 33444444332 12233332 577889999999998753
No 365
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.13 Score=46.49 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=31.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+++.|+||+|.+|+.++..|+..|. +|+++|++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999998887 999999876
No 366
>PRK07023 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.028 Score=51.38 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+|+|.|+||+|.+|..++..|+..|. ++++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 46899999999999999999998887 899999865
No 367
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=95.85 E-value=0.29 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=27.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 78 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~ 78 (356)
++|.|+||+|.+|+.++..|+..+. ++++.+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 4799999999999999999998886 7777654
No 368
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.16 Score=47.32 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=30.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+++.|+||+|.+|..++..|+..|. +|++.+++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998887 899999875
No 369
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.82 E-value=0.061 Score=50.64 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=44.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
+|||+|||. |.+|..++..+...+ ...-+.++|.+.. .+.++.+. .. ...+ +|+++.+.++|+|++++.
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~-~~--~~~~---~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASK-TG--AKAC---LSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHh-cC--CeeE---CCHHHHhcCCCEEEEcCC
Confidence 379999998 999999998887654 2223567888651 12222221 11 1222 467676799999999863
No 370
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.79 E-value=0.03 Score=54.07 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=47.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..++|||+ |..+..-+..++.--.+.+|.++|++. ++..+.++.+ . ...+... .|.++|+++||+|+.+.
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence 48999999 988887777665533378999999987 5566677777 2 3455543 57889999999999854
No 371
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.086 Score=49.39 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhh--------CCCcE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL--------TGMDL 115 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al--------~~aDi 115 (356)
++|.|+||+|.+|..++..|+..|. +|++.+++.... .++..... ..+.. .....+.++++ ...|+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 4799999999999999999998887 899999875111 12222110 11111 00011121222 24699
Q ss_pred EEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 116 VIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 116 VIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
||..+|..... ..+ -...+..|... .+.+.+.+++.. .+.|+++|.
T Consensus 80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS 135 (277)
T PRK05993 80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS 135 (277)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence 99998864321 111 23345666655 555666665543 456666654
No 372
>PRK05599 hypothetical protein; Provisional
Probab=95.77 E-value=0.63 Score=42.71 Aligned_cols=153 Identities=13% Similarity=0.144 Sum_probs=81.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhhC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENALT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al~ 111 (356)
|.+.|+||++.+|..++..|+ ++. .|++.+++. ++..+.++..... ..+..+.. -+| . .+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 458899999999999999998 454 899999876 3444445543211 11111110 011 1 12234
Q ss_pred CCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433 112 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 181 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~ 181 (356)
.-|++|..+|...... .+ ..+....|. ...+.+.+.+.+...++.|+++|.-.... +.
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~ 144 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------AR 144 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------CC
Confidence 6899999988642211 11 112222333 33344556565544457788877654322 12
Q ss_pred CCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433 182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 215 (356)
Q Consensus 182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~ 215 (356)
|..-.++.+.-....+-+.++..++ +..|++.
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~ 176 (246)
T PRK05599 145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI 176 (246)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence 2223345544334456666777663 3445433
No 373
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.76 E-value=0.095 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=30.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||.|||+ |.+|+.++..|+..|+. +|.|+|-+.
T Consensus 44 ~VlviG~-GGlGs~va~~La~~Gvg-~i~lvD~D~ 76 (392)
T PRK07878 44 RVLVIGA-GGLGSPTLLYLAAAGVG-TLGIVEFDV 76 (392)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCE
Confidence 8999999 99999999999998864 899999874
No 374
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=95.76 E-value=0.066 Score=51.79 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=43.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.+||+|||+ |++|.+++..|...+. +++..+....... ..+.... +.. .+..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~----~s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV----GTVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE----CCHHHHHhcCCEEEEeC
Confidence 469999999 9999999999998886 6666554331111 1111111 121 23567889999999985
No 375
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=95.75 E-value=0.096 Score=50.52 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=45.2
Q ss_pred CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe
Q 018433 45 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL 101 (356)
Q Consensus 45 ~KI~IIGa~G~--------------------vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~ 101 (356)
|||+|-|| |+ -|+.+|..|+..|+ +|+++|++.. ......+.+... ..
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence 68888888 64 36788888888888 9999998751 122333444321 11
Q ss_pred CCCChhhhhCCCcEEEEcC
Q 018433 102 GQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 102 ~t~d~~~al~~aDiVIi~a 120 (356)
.++..++.++||+||+.-
T Consensus 72 -AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred -cCCHHHHHhCCCEEEEec
Confidence 235678999999999984
No 376
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=95.75 E-value=0.23 Score=45.00 Aligned_cols=115 Identities=20% Similarity=0.147 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--CCCCeEEEEeC-CCC---hhhhh-------C
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTGAVVRGFLG-QPQ---LENAL-------T 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~~~~~v~~~~~-t~d---~~~al-------~ 111 (356)
.+|.|+|++|.+|++++..|+..|. .+++.|++.. ....++... .....+..+.. -+| ..+++ .
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999998886 8999998742 111111110 01122222211 122 11222 3
Q ss_pred CCcEEEEcCCCCCC---CCCc---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRK---PGMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~---~g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP 163 (356)
..|++|..+|.... ...+ -...+..|+.....+. +.+++. +.+.++++|..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~ 140 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV 140 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence 58999999886421 1111 2233456665555543 444433 45577777654
No 377
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=95.75 E-value=0.13 Score=46.68 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=63.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTG 112 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~ 112 (356)
|.|+||+|.+|.+++..|+..|. ++++++... ......++.+.. .++..+.. -+|. +++ +..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999887 788887643 222223333321 12222211 1121 122 234
Q ss_pred CcEEEEcCCCCCCC---CC---cHHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 018433 113 MDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV 164 (356)
Q Consensus 113 aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv 164 (356)
.|.+|..+|..... .. +....+..|......+.+.+ .+..+.+.++++|...
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~ 138 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS 138 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence 58899988864321 11 22345566666555554433 2223456777776654
No 378
>PLN02928 oxidoreductase family protein
Probab=95.75 E-value=0.046 Score=53.61 Aligned_cols=103 Identities=23% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHH--hcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..++|+|||. |.+|..+|..|..-|. +|+.+|..........+ ................++++.++.||+|++..
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 4579999999 9999999999886665 99999985311111111 00000000000001246889999999999975
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
- ..+ .|-.++- .+.+.+.-|++++||++
T Consensus 235 P--lt~---------~T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 235 T--LTK---------ETAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred C--CCh---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence 2 211 1111111 23344445789999997
No 379
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.18 Score=46.68 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe----CCCChhhhh----
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL----GQPQLENAL---- 110 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~----~t~d~~~al---- 110 (356)
++++|.|+||+|.+|.+++..|+..+ . .|++++++.. .....++.... ...+..+. ...+.++.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 34589999999999999999998874 5 8899998752 22233443321 11222211 011211112
Q ss_pred --CCCcEEEEcCCCCCCCCC---cH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 018433 111 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 --~~aDiVIi~ag~~~~~g~---~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN 162 (356)
.+.|++|..+|....... +- .+.+..|.... +.+.+.+.+.. .+.|+++|.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS 146 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSS 146 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 379999998876432111 11 12356666433 44566665544 355666654
No 380
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.12 Score=47.55 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
+++.|+||+|.+|.+++..|+..+. .+++.+... .......+.+.. ..+..+. .-+| ..+++
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4899999999999999999998886 777776643 222222232211 2222221 1122 22223
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhCC---CcEEEEec
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP---NATVNLIS 161 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p---~a~viv~t 161 (356)
...|+||..+|..... ..+ -...+..|+.....+.+.+..+.+ .+.+++++
T Consensus 86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~ 145 (258)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI 145 (258)
T ss_pred CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence 3469999999863221 112 234456777666666666555432 34555543
No 381
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.72 E-value=0.14 Score=46.19 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
.+||.|||+ |.+|...+..|...+. +|++++.+.... ..++.+.. .+......-+ ++.+.++|+||.+.+.+
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATNDP 81 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCCCH
Confidence 459999999 9999999999998885 899998643222 22333321 1222211112 35689999998875543
No 382
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.71 E-value=0.31 Score=46.53 Aligned_cols=100 Identities=25% Similarity=0.343 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhh------h
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENA------L 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------l 110 (356)
.+++.|+||+|.+|..++..|+..|. ++++.|... ....+.++... ...+..+.. -+| .++. +
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999999887 899999754 22233334322 122222211 112 1111 2
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG 147 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~ 147 (356)
...|++|..+|..... ..+ ....+..|+.....+.+.
T Consensus 88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~ 130 (306)
T PRK07792 88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRN 130 (306)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence 3589999999875432 122 223445565544444443
No 383
>PLN00016 RNA-binding protein; Provisional
Probab=95.70 E-value=0.07 Score=52.60 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCCeEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 43 AGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 43 ~~~KI~II----Ga~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.++||.|+ ||+|++|++++..|+..|+ +|+.++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 34689999 9999999999999999887 999999875
No 384
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.69 E-value=0.047 Score=52.49 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
...++|||+ |..|..-+..++.-..+.+|.++|++. +...+.++.+.. ...+... .+.++++++||+|+.+..
T Consensus 117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT~ 191 (301)
T PRK06407 117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSITN 191 (301)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEecC
Confidence 459999999 988887777666555678999999987 455555555421 2344443 467899999999998643
No 385
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.67 E-value=0.053 Score=52.15 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
..+|+|+|+ |..|...+..++......++.++|++. +...+.++.+. ...+. ..+.++++.+||+||.+..
T Consensus 125 ~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 125 PGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEccC
Confidence 459999999 999999988887533346999999986 34445455432 12222 1467789999999999754
No 386
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.66 E-value=0.0084 Score=59.32 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=44.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCC---ChhhhhCCCcEEEEcC
Q 018433 47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQP---QLENALTGMDLVIIPA 120 (356)
Q Consensus 47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~~aDiVIi~a 120 (356)
|.|+|+ |.+|+.++..|+......++++.|++.. +..+..+ . ...+.... .-. ++.+.++++|+||.++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~---~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-L---GDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---T---TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-c---ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 9999999999998876669999999862 2222222 1 11222211 112 3556789999999998
Q ss_pred CC
Q 018433 121 GV 122 (356)
Q Consensus 121 g~ 122 (356)
|.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 64
No 387
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.65 E-value=0.047 Score=54.01 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=54.8
Q ss_pred hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCc
Q 018433 36 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMD 114 (356)
Q Consensus 36 ~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aD 114 (356)
.+..++.++.||+|+|+ |.+|...+..+...|. +|..+|++.... ..+.... ...+.. .....++.+.++++|
T Consensus 159 ~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aD 232 (370)
T TIGR00518 159 LGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRAD 232 (370)
T ss_pred ecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCC
Confidence 45666678889999999 9999999999988776 799999875211 1121111 111211 111134667889999
Q ss_pred EEEEcCCCC
Q 018433 115 LVIIPAGVP 123 (356)
Q Consensus 115 iVIi~ag~~ 123 (356)
+||.+.+.|
T Consensus 233 vVI~a~~~~ 241 (370)
T TIGR00518 233 LLIGAVLIP 241 (370)
T ss_pred EEEEccccC
Confidence 999987654
No 388
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.63 E-value=0.24 Score=46.19 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhh-------h
Q 018433 44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------A 109 (356)
Q Consensus 44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~-------a 109 (356)
.+.+.|+||++ -+|..++..|+..|. .|++.|.+. ....+.++..... ....+. .-+| .++ .
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLG--SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccC--CceEeecCCCCHHHHHHHHHHHHhh
Confidence 45789999953 699999999999887 889998764 2233334432211 111110 0112 211 1
Q ss_pred hCCCcEEEEcCCCCCCC--------CCcHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHH
Q 018433 110 LTGMDLVIIPAGVPRKP--------GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKK 177 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~~--------g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~ 177 (356)
+-..|++|..+|..... ..+.. ..+..|......+.+.+... .+++.|+++|.-....
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~---------- 151 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---------- 151 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----------
Confidence 23479999999863211 11222 22344554333334333222 2457777776433211
Q ss_pred hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+.|..-.++.+......+-+.+|..++ +..|++..+
T Consensus 152 --~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i 187 (262)
T PRK07984 152 --AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI 187 (262)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeee
Confidence 122223345544444556677777763 455655444
No 389
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.43 Score=43.72 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=65.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhh-------hC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 111 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~ 111 (356)
+++.|+||+|.+|.+++..|+..|. .|++.|.+. ......++.... ..+..+.. -+| .+++ +.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999998887 899999876 233333333221 12222211 122 1121 24
Q ss_pred CCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tN 162 (356)
..|+||..+|.... + ..+. ...+..|......+.+.+. +....+.++++|.
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 138 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA 138 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence 67999998875321 1 2222 2345566655455555543 3334567777763
No 390
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.21 Score=52.73 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC----
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT---- 111 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~---- 111 (356)
.+.+++.|+||+|.+|..++..|+..|. +|+++++++ +.....++.... ..+..+. .-+| .+++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4456899999999999999999999887 899999876 222333333221 1222211 1122 223333
Q ss_pred ---CCcEEEEcCCCCCCCC--------CcHHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433 112 ---GMDLVIIPAGVPRKPG--------MTRDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 162 (356)
Q Consensus 112 ---~aDiVIi~ag~~~~~g--------~~r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN 162 (356)
..|++|..+|...... .+-...+..|......+... +++. ..+.|+++|.
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS 509 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS 509 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence 6899999998642111 11223345666554444444 4333 3456777654
No 391
>PLN02712 arogenate dehydrogenase
Probab=95.62 E-value=0.072 Score=56.73 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-CCcEEEEcC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA 120 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~a 120 (356)
.++|||+|||. |.+|..++..|...|. +|+.+|.+.....+.+ . . +.. .+++++.+. ++|+||++.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~--G--v~~---~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---L--G--VSY---FSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---c--C--CeE---eCCHHHHHhcCCCEEEECC
Confidence 35689999998 9999999999988776 8999998742111111 1 1 122 245656565 599999984
No 392
>PRK08223 hypothetical protein; Validated
Probab=95.62 E-value=0.064 Score=51.09 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=30.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||.|||+ |-+|+.++..|+..|+. +|.|+|-+.
T Consensus 29 ~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~ 61 (287)
T PRK08223 29 RVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDV 61 (287)
T ss_pred CEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence 8999999 99999999999999874 999999875
No 393
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.61 E-value=0.1 Score=47.30 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.+|.|+||+|.+|+.++..|+..|. +|++++.++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4899999999999999999998888 899999876
No 394
>PRK07577 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.15 Score=46.03 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.++|.|+||+|.+|..++..|+..|. ++++++++.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999998887 899999875
No 395
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.60 E-value=0.078 Score=52.50 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=29.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 79 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~ 79 (356)
||+|+|+ |-+|+.++..|+..|. .+|+|+|.+
T Consensus 137 ~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 137 RVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred cEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 8999999 9999999999999886 489999987
No 396
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.29 Score=46.41 Aligned_cols=114 Identities=22% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCCh---hh-------hh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQL---EN-------AL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~---~~-------al 110 (356)
..++.|+||+|.+|..++..|+..|. +|++.+++. +.....++.. ...+..+ ..-+|. ++ .+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 899999876 2333333321 1111111 111232 11 12
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN 162 (356)
...|+||..+|..... ..+ -...+..|......+++.+..+- ..+.|+++|.
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4679999999864211 111 22345566665555555544321 3466766654
No 397
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.59 E-value=0.04 Score=52.13 Aligned_cols=71 Identities=24% Similarity=0.213 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
++++||+|||. |.+|..++..|... +-. +++ ++|.+... +.++.... . .... .+++++.+.++|+|+++
T Consensus 4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi~ 74 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGL-R-RPPP---VVPLDQLATHADIVVEA 74 (271)
T ss_pred CCeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhc-C-CCcc---cCCHHHHhcCCCEEEEC
Confidence 45689999999 99999999888764 222 655 78876521 22222211 0 0111 24677778999999998
Q ss_pred CC
Q 018433 120 AG 121 (356)
Q Consensus 120 ag 121 (356)
+.
T Consensus 75 tp 76 (271)
T PRK13302 75 AP 76 (271)
T ss_pred CC
Confidence 64
No 398
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.57 E-value=0.08 Score=49.18 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.+|+.++..|+..|. .+|+|+|.+.
T Consensus 26 ~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 26 RVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred cEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 8999999 9999999999999885 4999999875
No 399
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.4 Score=44.23 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh----------hhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al 110 (356)
...+.|+||+|.+|..++..|+..|. +|++.+++. +.....++........+..+. .-+|.+ +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 34799999999999999999998887 899999876 233333333221111222211 112321 123
Q ss_pred CCCcEEEEcCCCCCCC---CCc---HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRKP---GMT---RDDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP 163 (356)
...|++|..+|..... ..+ ....+..| ....+.+.+.+++. ..+.|+++|.-
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~ 147 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNSL 147 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEeccc
Confidence 4579999999864211 111 11223333 33445555555543 34567766543
No 400
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.57 E-value=0.1 Score=51.09 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=30.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus 26 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 26 HVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 9999999 9999999999999886 4999999874
No 401
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.57 E-value=0.056 Score=50.77 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=29.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||.|+||+|++|++++..|+..+. +|..+.++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 589999999999999999998887 888888875
No 402
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.56 E-value=0.57 Score=43.87 Aligned_cols=68 Identities=25% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+|||+|+|+.|.+|..++..+...+-..-+.++|.+....... . ...+.. ++|+++.++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~--~~~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----G--ALGVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----C--CCCccc---cCCHHHhccCCCEEEECC
Confidence 4799999988999999998777654333334588765111111 1 112221 367878888999999664
No 403
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.55 E-value=0.067 Score=51.65 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
..+|+|||+ |.+|...+..++....+.+|.++|++. ....+.++.+. ...+... .+.++++++||+|+.+..
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCATL 198 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEeeC
Confidence 458999999 999999987666533356999999976 34445555432 1223332 466789999999976543
No 404
>PRK08324 short chain dehydrogenase; Validated
Probab=95.54 E-value=0.11 Score=55.37 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 110 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------ 110 (356)
+.++|.|+||+|.+|+.++..|+..|. +|+++|++. +.....++... ..+..+. .-+| ..+++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998887 899999976 22222223221 1111111 1122 22223
Q ss_pred -CCCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 018433 111 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 -~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN 162 (356)
.+.|+||.++|...... .+. ...+..|......+ .+.+++....+.|++++.
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 36899999998643211 111 12344555444444 444444333466666654
No 405
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.17 Score=46.55 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------- 110 (356)
+.+.|+||+|.+|++++..|+..|. ++++.|.+. ......++.+.. ..+..+. .-+| .++++
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4899999999999999999999887 899999865 222233343321 1121111 1112 22222
Q ss_pred CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433 111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 163 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP 163 (356)
..-|++|..+|...... .+ -...+..|+.....+.+.+... ...+.++++|.-
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 146 (254)
T PRK06114 85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASM 146 (254)
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECch
Confidence 33599999998643211 11 1233455655544444433322 234566666543
No 406
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.53 E-value=0.071 Score=51.76 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
..+++|||+ |..|...+..|+....+.+|.+++++. ++..+.++.+.. ...+.. ..++++++.+||+||.+..
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence 358999999 999988888776434457999999986 444455554321 122332 2577889999999999753
No 407
>PRK06123 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.59 Score=42.44 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=63.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe----CCCChhhhh-------C
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL----GQPQLENAL-------T 111 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al-------~ 111 (356)
.+.|+||+|.+|++++..|+..|. .+++.+.+. ......++.... ..+..+. ...++++++ .
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQG--GEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCC--CcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 589999999999999999998886 778877543 122222232211 1111110 011222233 2
Q ss_pred CCcEEEEcCCCCCCC----CCcH---HHHHHHHHHHHHHHHHHHHHh----C--CCcEEEEecCCC
Q 018433 112 GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC----C--PNATVNLISNPV 164 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~----~--p~a~viv~tNPv 164 (356)
..|+||.++|..... ..+. ...+..|+.....+.+...++ . .++.++++|...
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~ 145 (248)
T PRK06123 80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMA 145 (248)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchh
Confidence 679999999864321 1121 234566666554444443332 1 135677766654
No 408
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.45 Score=44.44 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.+.|+||+|.+|.+++..|+..|. +|++.+.+.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~ 44 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRV 44 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3799999999999999999999887 888888765
No 409
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.52 E-value=0.55 Score=44.65 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=80.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCChh-------hhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLE-------NAL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~-------~al 110 (356)
.+.|.|+||+.-+|.++|+.++..|. .++|+-... ++-...++.......++.... ..++.+ .-+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 34789999999999999999999987 778888765 333435555443211122111 112222 346
Q ss_pred CCCcEEEEcCCCCCCCCC-c------HHHHHH----HHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 018433 111 TGMDLVIIPAGVPRKPGM-T------RDDLFN----INAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 168 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g~-~------r~~~~~----~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t 168 (356)
.+.|+.|..||..+ .+. + ....+. -.+-..+...+.+++.+ ++.|++++...+.+.
T Consensus 90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP 156 (282)
T ss_pred CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence 79999999999877 331 1 122333 44577788888888877 899999888777653
No 410
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.49 E-value=0.055 Score=55.48 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC---CCCCeEEEEeCCCChhhhhCC---CcEE
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---DTGAVVRGFLGQPQLENALTG---MDLV 116 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~---~~~~~v~~~~~t~d~~~al~~---aDiV 116 (356)
..++|++||- |.+|+.+|..|+..|. +|+.+|+...+ +.++.+. .....+.. ..+++++.+. +|+|
T Consensus 5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCCEE
Confidence 3468999999 9999999999999998 99999987521 2222221 00011111 2345565554 9999
Q ss_pred EEcC
Q 018433 117 IIPA 120 (356)
Q Consensus 117 Ii~a 120 (356)
|+..
T Consensus 77 i~~v 80 (493)
T PLN02350 77 IILV 80 (493)
T ss_pred EEEC
Confidence 9974
No 411
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.47 E-value=0.13 Score=46.81 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
..++.|+|++|.+|..++..|+..|. .++++|.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999998887 899999876
No 412
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=95.45 E-value=0.17 Score=48.66 Aligned_cols=105 Identities=19% Similarity=0.142 Sum_probs=68.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---ch--hHHHHHhcCCCCCeEEEEeCC-CC---hhhhh--CC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTGAVVRGFLGQ-PQ---LENAL--TG 112 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~al--~~ 112 (356)
..+|.|+||+|++||+.+..|+..+. +++.+|.-. +. ..+..+.+. ...+...... .| +++-| ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence 35899999999999999999999998 999999755 11 122333332 1233332111 12 22222 34
Q ss_pred CcEEEEcCCCCC-CCC-CcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433 113 MDLVIIPAGVPR-KPG-MTRDDLFNINAGIVRTLCEGIAKCC 152 (356)
Q Consensus 113 aDiVIi~ag~~~-~~g-~~r~~~~~~N~~i~~~i~~~i~~~~ 152 (356)
-|-|++.|+... .+. +....+...|+-....+.+.+++++
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 677888776532 111 2346667788888999999999887
No 413
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.42 E-value=0.13 Score=46.32 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=30.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 39999999 8899999999999987 4899999774
No 414
>PRK07411 hypothetical protein; Validated
Probab=95.42 E-value=0.089 Score=52.42 Aligned_cols=57 Identities=28% Similarity=0.503 Sum_probs=41.4
Q ss_pred HHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 11 IARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+.|.+-|++=|.+-.|. |++=++. ||+|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 16 ~~ry~Rq~~l~~~g~~~-----q~~L~~~------~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~ 72 (390)
T PRK07411 16 YERYSRHLILPEVGLEG-----QKRLKAA------SVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV 72 (390)
T ss_pred HHHhhceechhhcCHHH-----HHHHhcC------cEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 34555566555544443 3333344 9999999 9999999999999987 4999999874
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.42 E-value=0.093 Score=55.25 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=83.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChh----hhhCCCcEEEEc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLE----NALTGMDLVIIP 119 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~----~al~~aDiVIi~ 119 (356)
..+|.|+|. |.+|+.++..|...+. +++.+|.|+. .+..+.+.. ..-+.+ . .+|.+ ..+++||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g-~~v~~G-D-at~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDIS--AVNLMRKYG-YKVYYG-D-ATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhCC-CeEEEe-e-CCCHHHHHhcCCccCCEEEEE
Confidence 468999999 9999999999998888 8999999862 122233221 122222 1 12321 235789999998
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 198 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~ 198 (356)
.+.+ ..|. .++..+++.+|+..++.- .||.+.- .+++. | .+.++-=+..-+..+-
T Consensus 472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~-G--a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEAH------ELLQA-G--VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhC-C--CCEEEccHHHHHHHHH
Confidence 5322 3343 355667888999876654 4665432 23443 3 2444433443344555
Q ss_pred HHHHHHhCCCCCCCc
Q 018433 199 TFVAEVLGLDPRDVD 213 (356)
Q Consensus 199 ~~la~~l~v~~~~v~ 213 (356)
...=..+|+++.++.
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 555577788876663
No 416
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.35 E-value=0.09 Score=48.30 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=29.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.+|+.++..|+..|. .+++|+|.+.
T Consensus 23 ~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 23 RVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred cEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 8999999 9999999999999886 4999999765
No 417
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.32 E-value=0.29 Score=44.93 Aligned_cols=114 Identities=14% Similarity=0.194 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhh-------hCCCcE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMDL 115 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi 115 (356)
.+++.|+||+|.+|..++..|+..|. ++++.+.+.. ....++.+... ..+.. .....+.+++ +...|+
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV 82 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45899999999999999999999887 7888765431 11122222110 01110 0001122222 236799
Q ss_pred EEEcCCCCCC-C--CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433 116 VIIPAGVPRK-P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 116 VIi~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN 162 (356)
||..+|.... + ..+. ...+..|+.. .+.+.+.+++. ..+.||++|.
T Consensus 83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS 138 (255)
T PRK06463 83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS 138 (255)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 9999986431 1 1122 2334455554 55666666533 3456666654
No 418
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.31 E-value=0.057 Score=47.43 Aligned_cols=57 Identities=28% Similarity=0.480 Sum_probs=45.2
Q ss_pred CCCCCeEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 41 GAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 41 ~~~~~KI~IIGa~G~-vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
..+..||.|||+ |. +|..++..|...+. ++.+++.+. .++.+.+++||+||.+
T Consensus 41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa 94 (168)
T cd01080 41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence 345679999999 86 58889999988776 788888631 3566789999999999
Q ss_pred CCCC
Q 018433 120 AGVP 123 (356)
Q Consensus 120 ag~~ 123 (356)
.+.|
T Consensus 95 t~~~ 98 (168)
T cd01080 95 VGKP 98 (168)
T ss_pred CCCC
Confidence 8766
No 419
>PRK07578 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.15 Score=45.14 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=58.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh---hCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA---LTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a---l~~aDiVIi~ag 121 (356)
|++.|+||+|.+|..++..|+.. .+|++++++.. ....|+.+. .+.++. +...|++|..+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag 64 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG 64 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence 58999999999999999999877 38999987641 011122221 111122 346899999988
Q ss_pred CCCC-C--CCcHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433 122 VPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLIS 161 (356)
Q Consensus 122 ~~~~-~--g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t 161 (356)
.... + +.+.. ..+..|+.....+.+....+- +.+.++++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 6421 1 12222 224455554445555444332 345566655
No 420
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.26 E-value=0.46 Score=43.21 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=61.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 110 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l 110 (356)
+.+.|+|++|.+|..++..|+..|. ++++.. .+. ......++.... ..+..+. .-+|. .++ +
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999887 777754 322 111222232211 1121111 11222 222 2
Q ss_pred CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
...|+||.++|...... .+ ....+..|......+.+.+... .+.+.|+++|.
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS 140 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISS 140 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence 46899999998753211 11 2334556665544444443322 23356776664
No 421
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.24 E-value=0.064 Score=53.90 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
.+..+|+|+|+ |.+|..++..|...|. .+|+++|++.. ...+..+. .. .+ ...++.+++.++|+||.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g-----~~--~i-~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG-----GE--AV-KFEDLEEYLAEADIVISS 247 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC-----Ce--Ee-eHHHHHHHHhhCCEEEEC
Confidence 44579999999 9999999999987763 48999998752 22222221 11 11 123567889999999998
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 167 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~ 167 (356)
.+.+..- .+. +..+...... ...+++-+++|-|+-
T Consensus 248 T~s~~~i-i~~------------e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 248 TGAPHPI-VSK------------EDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred CCCCCce-EcH------------HHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 7654210 111 1111111111 245888889998876
No 422
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.21 E-value=0.088 Score=51.61 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..+++|||+ |..+...+..++.-..+.+|.++|++. +...+.++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 458999999 988877776665544568999999987 45555566542 223443 257889999999999864
No 423
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.21 Score=46.77 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=62.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------CCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TGM 113 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------~~a 113 (356)
.+.|+|| |.+|.+++..|. .|. +|++.|++. +.....++.... ..+..+. .-+| .+.++ ...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4566666 899999999986 565 999999875 222223333211 1222111 1122 22222 358
Q ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 164 (356)
Q Consensus 114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv 164 (356)
|++|..+|... ...+-...+..|+.....+.+.+...- +++.+++++.-.
T Consensus 78 d~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~ 128 (275)
T PRK06940 78 TGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS 128 (275)
T ss_pred CEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence 99999998752 122344556777766666655555432 334455555433
No 424
>PRK06484 short chain dehydrogenase; Validated
Probab=95.21 E-value=0.12 Score=52.97 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCChhhhh-------CCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGM 113 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~a 113 (356)
.+++.|+||+|.+|..++..|+..|. +|+++|++. +.....++.... ..+.. .....+.++.+ ...
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999887 899999875 222222221100 01111 00011222222 347
Q ss_pred cEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433 114 DLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 185 (356)
Q Consensus 114 DiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k 185 (356)
|++|..+|... .+ ..+ ....+..|+.....+.+.+..+- ..+.|+++|...... +.|..-
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~ 412 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN 412 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence 99999998642 11 122 23445666666655555554432 356788877654322 233333
Q ss_pred EEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.++.+......+-+.++..++ +..|++..+
T Consensus 413 ~Y~asKaal~~l~~~la~e~~--~~gI~vn~v 442 (520)
T PRK06484 413 AYCASKAAVTMLSRSLACEWA--PAGIRVNTV 442 (520)
T ss_pred hhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence 455543333455666676653 344544433
No 425
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.20 E-value=0.099 Score=51.48 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=46.7
Q ss_pred CeEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~-~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
+||+|+||+|.||+.+...|. +... ..+++++......|....... ..+.... .++ .+++++.|+|++++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~----~~~~v~~-~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGG----TTGTLQD-AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCC----CcceEEc-Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 5553 478999987652222221111 1222221 122 247899999999876
No 426
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.20 E-value=0.048 Score=54.14 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.++||+|+||+|.+|..+...|...+. .+|.++..+...|......+ ... .....+. ..+ .++++++|+||++.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~-~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLIT-QDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccC-cccccee-cCC-HHHhcCCCEEEEcC
Confidence 567999999999999999998887743 38888876542222111111 110 1111111 122 23479999999975
Q ss_pred C
Q 018433 121 G 121 (356)
Q Consensus 121 g 121 (356)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 3
No 427
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.98 Score=41.51 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---h---hhhCCCc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E---NALTGMD 114 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~---~al~~aD 114 (356)
.+++.|+|++|.+|..++..|+..|. +|+++|++. ......++.... ...+..+. .-+|. . +.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 35899999999999999999998887 899999876 222223333211 11222111 11222 1 1245799
Q ss_pred EEEEcCCCCC-CC--CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 018433 115 LVIIPAGVPR-KP--GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 115 iVIi~ag~~~-~~--g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN 162 (356)
++|..+|... .+ ..+ -...+..|+... +.+.+.+.+. ..+.++++|.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss 140 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG 140 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence 9999988642 11 111 123345555543 3444444433 2356666653
No 428
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.18 E-value=0.24 Score=44.82 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..||.|||+ |.+|..-+..|+..|- .|++++.+... ...++.+. ..+.......+ .+.+.++|+||.+.+.
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATDD 79 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence 349999999 9999999999998886 89999976422 22233322 13333322223 3578999999998654
No 429
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=95.14 E-value=0.61 Score=42.05 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=61.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhhC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT 111 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al~ 111 (356)
.+.|+||+|.+|..++..|+..|. ++++... +. ......++.... ..+..+. .-+|. .+.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999998887 7888776 32 111111222111 1222211 11221 12234
Q ss_pred CCcEEEEcCCCCCCC---CC---cHHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 018433 112 GMDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 112 ~aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP 163 (356)
..|+||..+|..... .. +-...+..|......+ .+.+++. +.+.|+++|..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~ 138 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV 138 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence 689999998864211 11 1233445666654444 3444332 34567776654
No 430
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.14 E-value=0.072 Score=50.64 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=43.6
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 49 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 49 IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
|||. |.+|..++..|+..+. +|.++|++... ..++.... ... +.++.++++++|+||++.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML 60 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 5898 9999999999998887 89999987521 22233221 111 245678899999999985
No 431
>PRK06484 short chain dehydrogenase; Validated
Probab=95.10 E-value=0.21 Score=51.17 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=62.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhh-------hCCCcE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDL 115 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-------l~~aDi 115 (356)
..+.|+||++.+|..++..|+..|. .|+++|++. +.....++........... +...+.+++ +...|+
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~g~iD~ 82 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDHHALAMDV-SDEAQIREGFEQLHREFGRIDV 82 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceeEEEecc-CCHHHHHHHHHHHHHHhCCCCE
Confidence 4789999999999999999999887 899999875 2222222211000000111 001122222 346899
Q ss_pred EEEcCCCCC---CC--CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 018433 116 VIIPAGVPR---KP--GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 116 VIi~ag~~~---~~--g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tN 162 (356)
+|..+|... .+ ..+ -...+..|+..... ..+.+.+....+.|++++.
T Consensus 83 li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS 141 (520)
T PRK06484 83 LVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS 141 (520)
T ss_pred EEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 999988621 11 111 23345566554444 4444433333346777764
No 432
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.08 E-value=0.13 Score=49.67 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
...++|||+ |..+..-+..++.-..+.+|.++|++. +...+..+.+. ...+... .+.++++++||+|+.+.
T Consensus 128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence 459999999 988888877776655678999999987 34444334332 2334432 46789999999999864
No 433
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.08 E-value=1.7 Score=40.28 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=82.0
Q ss_pred CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCChh-------hhhC
Q 018433 44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV-VRG-FLGQPQLE-------NALT 111 (356)
Q Consensus 44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~~-------~al~ 111 (356)
.+.+.|+||++ -+|..++..|+..|. .|++.|.++ ......++.+...... +.. .+...+.+ +.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789999964 599999999998887 888888764 2222333432111001 110 00011111 2235
Q ss_pred CCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433 112 GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT 180 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~ 180 (356)
..|++|..+|.... + ..+ -...+..|......+.+.....- ..+.|++++...... +
T Consensus 86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~ 153 (260)
T PRK06603 86 SFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------V 153 (260)
T ss_pred CccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------C
Confidence 68999998876321 1 112 22334455554444444433222 357788877543211 1
Q ss_pred CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.|..-.++.+.-....|-+.+|..++ +..|++..+
T Consensus 154 ~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v 188 (260)
T PRK06603 154 IPNYNVMGVAKAALEASVKYLANDMG--ENNIRVNAI 188 (260)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence 22223455554444556677777764 445544433
No 434
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.07 E-value=0.16 Score=51.64 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
....+|+|+|. |.+|..+|..+...|. +|+.+|+++... .+.. + . ..+ .+++++++.||+||.+.
T Consensus 252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G--~~~------~~leell~~ADIVI~at 317 (476)
T PTZ00075 252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G--YQV------VTLEDVVETADIFVTAT 317 (476)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C--cee------ccHHHHHhcCCEEEECC
Confidence 44679999999 9999999999987776 899998876322 1111 1 1 111 24678899999999986
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 163 (356)
|.+ +. +. .+.+....|.++++|++-.
T Consensus 318 Gt~---~i------------I~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 318 GNK---DI------------IT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred Ccc---cc------------cC--HHHHhccCCCcEEEEcCCC
Confidence 532 11 11 1234444589999999754
No 435
>PRK06953 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.13 Score=46.40 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=64.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhh---hC--CCcEEEE
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA---LT--GMDLVII 118 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a---l~--~aDiVIi 118 (356)
.++.|+||+|.+|++++..|+..|. +++++|.+.... .++..... ..+.. .....+.++. +. ..|+||.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 3789999999999999999988876 899999875111 12222111 01111 0011122221 22 3799999
Q ss_pred cCCCCC--C-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 018433 119 PAGVPR--K-P--GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP 163 (356)
Q Consensus 119 ~ag~~~--~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP 163 (356)
++|... . + ..+ -...+..|......+.+.+..+- ..+.+++++.-
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~ 131 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR 131 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence 988642 1 1 112 23345677776666666665432 23455555443
No 436
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.06 E-value=0.1 Score=52.47 Aligned_cols=72 Identities=22% Similarity=0.208 Sum_probs=45.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE-eCCCChhhh-hCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENA-LTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~~a-l~~aDiVIi~ag 121 (356)
|||.|+|+ |.+|..++..|...+. +++++|.++.. ...+.......-+.+- .....++++ +.++|.||++.+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 69999999 9999999999988887 89999987621 1112211100111110 001223444 789999999853
No 437
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.03 E-value=0.25 Score=49.52 Aligned_cols=90 Identities=20% Similarity=0.168 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
....+|+|+|+ |.+|..++..+...|. +++.+|+++. ...+..+ ...+ .+.+++++++|+||.+.
T Consensus 200 l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~-----G~~~------~~~~e~v~~aDVVI~at 265 (413)
T cd00401 200 IAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME-----GYEV------MTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc-----CCEE------ccHHHHHcCCCEEEECC
Confidence 45679999999 9999999999988887 7888999872 2222211 1111 12357889999999986
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHH-HHHhCCCcEEEEecCC
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEG-IAKCCPNATVNLISNP 163 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~-i~~~~p~a~viv~tNP 163 (356)
|.+ .++ ... +....|.+++++++.+
T Consensus 266 G~~---------------~~i---~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---------------DII---TGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---------------HHH---HHHHHhcCCCCcEEEEeCCC
Confidence 532 111 112 3334478899999865
No 438
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.03 E-value=0.8 Score=44.69 Aligned_cols=142 Identities=20% Similarity=0.170 Sum_probs=81.2
Q ss_pred HhccCCCchhhhhhhhh--------hhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH
Q 018433 15 SAHLYPPNLQMEENSCL--------RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT 85 (356)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~ 85 (356)
++.-.|.++..++..-. |--+. .+-.+..+|+|+|+ |-+|......+...+. +++.+|+++ ....+
T Consensus 132 ~~~~iP~~~d~~~aApllCaGiT~y~alk~--~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a 206 (339)
T COG1064 132 YVVKIPEGLDLAEAAPLLCAGITTYRALKK--ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELA 206 (339)
T ss_pred HeEECCCCCChhhhhhhhcCeeeEeeehhh--cCCCCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHH
Confidence 44567888888776432 22111 23344569999999 8777766666655664 999999987 33344
Q ss_pred HHHhcCCCCCeEEEEeCCCChhhhhCC-CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433 86 ADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 86 ~dl~~~~~~~~v~~~~~t~d~~~al~~-aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
.+|- .+.-+.+...|.-+++++ +|+||.+++ +. .+-..++-..+++.++.+.+|-
T Consensus 207 ~~lG-----Ad~~i~~~~~~~~~~~~~~~d~ii~tv~-~~------------------~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 207 KKLG-----ADHVINSSDSDALEAVKEIADAIIDTVG-PA------------------TLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred HHhC-----CcEEEEcCCchhhHHhHhhCcEEEECCC-hh------------------hHHHHHHHHhcCCEEEEECCCC
Confidence 4441 121111111233344443 999999976 31 2223333344799999999994
Q ss_pred -CccHHH-HHHHHHHhCCCCCCCEEEec
Q 018433 165 -NSTVPI-AAEVFKKAGTYDPKKLLGVT 190 (356)
Q Consensus 165 -~~~t~~-~~~~~~~~~~~~~~kviG~t 190 (356)
.....+ ...+ -+...+|.|+.
T Consensus 263 ~~~~~~~~~~~l-----i~~~~~i~GS~ 285 (339)
T COG1064 263 GGPIPLLPAFLL-----ILKEISIVGSL 285 (339)
T ss_pred CcccCCCCHHHh-----hhcCeEEEEEe
Confidence 332211 1111 13356888883
No 439
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.02 E-value=0.25 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 44 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.+.+.|+||+ +.+|..++..|+..|. .|++.+++.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 3479999996 5899999999999887 899998764
No 440
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.02 E-value=0.31 Score=49.05 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhh-------hCCCcE
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMDL 115 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi 115 (356)
..++.|+||+|.+|..++..|+..+. +++++|.........++........+.. .....+.++. +...|+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~ 287 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence 46899999999999999999998887 8999998542211122221110011111 0000111111 225899
Q ss_pred EEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433 116 VIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 162 (356)
Q Consensus 116 VIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN 162 (356)
||.++|..... .++ ....+..|+.....+.+.+... .+.+.|+++|.
T Consensus 288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 99999864321 112 2344567777777777776542 24567777764
No 441
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.02 E-value=0.12 Score=45.06 Aligned_cols=57 Identities=26% Similarity=0.442 Sum_probs=41.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.+.+||+|||.+..||..++..|...+- .+.+.+.+ |.++++.++.||+||.+.|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence 3456999999988899999999988765 55555432 3467788899999999998
Q ss_pred CC
Q 018433 122 VP 123 (356)
Q Consensus 122 ~~ 123 (356)
.|
T Consensus 89 ~~ 90 (160)
T PF02882_consen 89 KP 90 (160)
T ss_dssp ST
T ss_pred cc
Confidence 76
No 442
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.01 E-value=0.29 Score=49.32 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
...+|+|+|. |.+|..++..+...|. +|+.+|+++.+.... ..+ . ..+ .+++++++++|+||.+.|.
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G--~~v------~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G--FRV------MTMEEAAELGDIFVTATGN 277 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C--CEe------cCHHHHHhCCCEEEECCCC
Confidence 5679999999 9999999999988777 899999987222111 011 1 111 1356889999999987643
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
+ .++. .+.+....+.+++++++-+.+
T Consensus 278 ~---------------~vI~--~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 K---------------DVIT--AEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred H---------------HHHH--HHHHhcCCCCCEEEEcCCCCC
Confidence 2 1111 122333346789999875443
No 443
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.15 Score=51.38 Aligned_cols=123 Identities=24% Similarity=0.317 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
.++|.|+|+ |.+|..+|..|+..|. +|+++|.+... ....++... .++.+... ...+...++|+||.++
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEECC
Confidence 458999999 7899999999999998 99999997521 112233221 12222211 1124467899999998
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCccHHHHHHHHHH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKK 177 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~~~~~~ 177 (356)
|.+...- .....-..+++++...+...+.. + ..+|-+| |==.+.+.+++.++..
T Consensus 77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8752211 11122235666666655544432 2 4455665 3333555555555544
No 444
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.98 E-value=0.33 Score=50.01 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=81.1
Q ss_pred hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEE-----------eCC
Q 018433 36 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF-----------LGQ 103 (356)
Q Consensus 36 ~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~-----------~~t 103 (356)
-++.+..++.||+|+|+ |.+|...+..+...|- +|+.+|.++ ....+..+--. ...+... ..+
T Consensus 157 ~taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 157 ITAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred eeccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcc
Confidence 35566778899999999 9999998888887776 799999987 33333332110 0001000 001
Q ss_pred CCh--------hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHH-HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433 104 PQL--------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGI-VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 174 (356)
Q Consensus 104 ~d~--------~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i-~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~ 174 (356)
.++ .+.++++|+||.++|.|.++.. .. .++..+. ..|.+.|+.++.+-+-.+.. +.-
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~---mkpGgvIVdvg~~~GG~~e~-t~~ 297 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVAS---MKPGSVIVDLAAENGGNCEL-TVP 297 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHh---cCCCCEEEEEccCCCCCccc-ccC
Confidence 221 1223689999999998743221 11 1333333 33888888887653222110 000
Q ss_pred HHHhCCCCCCCEEEechhhHHHHHHHHHHHh
Q 018433 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 205 (356)
Q Consensus 175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l 205 (356)
.........-.++|..++++ ++....++.+
T Consensus 298 ~~~v~~~~gVti~Gv~n~P~-~~p~~As~ll 327 (509)
T PRK09424 298 GEVVVTDNGVTIIGYTDLPS-RLPTQSSQLY 327 (509)
T ss_pred ccceEeECCEEEEEeCCCch-hHHHHHHHHH
Confidence 00000002236678766664 5554344444
No 445
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.94 E-value=0.24 Score=44.56 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=29.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.+|+.++..|+..|. .+|+++|.+.
T Consensus 23 ~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 23 RILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred cEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 9999999 8899999999999986 4899999874
No 446
>PLN02503 fatty acyl-CoA reductase 2
Probab=94.93 E-value=0.31 Score=51.33 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC--c---hhHHHHHhcC-----------C-----CCCeEEE
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN--T---PGVTADISHM-----------D-----TGAVVRG 99 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~--~---~g~~~dl~~~-----------~-----~~~~v~~ 99 (356)
-+.+.|.|+||+|++|..++..|+... -+.+|+++.+.. . +....++.+. . ...++..
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 356799999999999999999888654 456888887643 1 1110111110 0 0123333
Q ss_pred EeCC-C---------ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433 100 FLGQ-P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 152 (356)
Q Consensus 100 ~~~t-~---------d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~ 152 (356)
+.+. + +++...++.|+||.+|+... .+.........|+....++.+.+.+..
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2211 1 22333467999999987542 234455667889999999999887653
No 447
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.93 E-value=0.18 Score=49.75 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
+||+|+||+|.+|..+...++.. .. ..+++++.....-+...++.. ....... ..|. +.++++|+|+++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~~-~~~~~~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFDI-DALKKLDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCCh-hHhcCCCEEEECCC
Confidence 69999999999999999755544 43 457888776432222112221 1122221 1232 56899999999875
No 448
>PRK06483 dihydromonapterin reductase; Provisional
Probab=94.91 E-value=0.6 Score=42.24 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=30.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 4799999999999999999998887 899999875
No 449
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.91 E-value=0.074 Score=52.12 Aligned_cols=74 Identities=24% Similarity=0.260 Sum_probs=44.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHH-H-HhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-D-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~-d-l~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
|||+|+||+|.+|..++..|...+.. +++ +++.+...+... + ..+.......... ..|.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNLE--PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCceee--cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999988866433 666 667654222211 1 1111110112221 1244444469999999753
No 450
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.89 E-value=0.081 Score=51.56 Aligned_cols=71 Identities=21% Similarity=0.418 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
++||+|+||+|.+|..++..|...++ ..+|..+-.+...+...++.. ..+.... .+ ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d--~~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED--LT-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee--CC-HHHHcCCCEEEECCC
Confidence 36999999999999999999987653 347777755442233222211 2333321 12 245789999999865
No 451
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.88 E-value=1.5 Score=41.03 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=80.1
Q ss_pred CeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCCh----------hhhhC
Q 018433 45 FKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQL----------ENALT 111 (356)
Q Consensus 45 ~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~----------~~al~ 111 (356)
..+.|+||++ -+|..+|..|+..|. .|++.|+++. .....++.+... ..+.....-+|. .+.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 4788999964 799999999999887 8999987651 111222322110 011110011221 11235
Q ss_pred CCcEEEEcCCCCCC-----C--CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433 112 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT 180 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~ 180 (356)
..|++|..+|.... + ..+. ...+..|......+.+.+..+- ..+.||++|...... +
T Consensus 85 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~------------~ 152 (271)
T PRK06505 85 KLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR------------V 152 (271)
T ss_pred CCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc------------c
Confidence 68999999986431 1 1222 2234455544433333332211 246777776543211 1
Q ss_pred CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.|..-.++.+.-....+-+.+|..++ +..|++..+
T Consensus 153 ~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrVn~v 187 (271)
T PRK06505 153 MPNYNVMGVAKAALEASVRYLAADYG--PQGIRVNAI 187 (271)
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence 22223455554444456677777763 445544433
No 452
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.88 E-value=0.14 Score=51.61 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.+..+|+|+|+ |.+|..++..|...|. .+|+++|++.... .++.+.. ...+.. ..++.+++.++|+||.+.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~-g~~~~~---~~~~~~~l~~aDvVI~aT~ 251 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEF-GGEAIP---LDELPEALAEADIVISSTG 251 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHc-CCcEee---HHHHHHHhccCCEEEECCC
Confidence 45579999999 9999999988887663 4889999875221 1222211 111111 1456678899999999876
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCcc
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST 167 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~ 167 (356)
.|... .+. ..++. .+..- ....+++-+++|-|+-
T Consensus 252 s~~~~-i~~--------~~l~~---~~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 252 APHPI-IGK--------GMVER---ALKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred CCCcE-EcH--------HHHHH---HHhhccCCCeEEEEeCCCCCCc
Confidence 54211 111 11111 11111 2457888889999876
No 453
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.87 E-value=0.14 Score=49.60 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
++||+|+||.|.||+.+...|.... .+.++.++=...-.|.. .+...-.. .+.. ...|. .+++++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence 3699999999999999999999854 56777777765522322 32222110 1110 01232 45789999999986
No 454
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.81 E-value=0.12 Score=53.49 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..++|+|||. |.+|..+|..|..-|. +|+.+|.......+.++ .+.. ..++++.+++||+|++..
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELLARADFITVHT 201 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHHhhCCEEEEcc
Confidence 3469999999 9999999999986666 99999975322222111 1121 135788999999999975
No 455
>PLN02494 adenosylhomocysteinase
Probab=94.77 E-value=0.26 Score=50.05 Aligned_cols=94 Identities=22% Similarity=0.186 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
....+|+|+|. |.+|..++..+...|. +|+.+|+++.. ..+. .+. + .+ .+++++++.+|+||.+.
T Consensus 252 LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~--~~G-~--~v------v~leEal~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQAL--MEG-Y--QV------LTLEDVVSEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH--hcC-C--ee------ccHHHHHhhCCEEEECC
Confidence 34579999999 9999999999987776 89999987622 2222 111 1 11 13567899999999976
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 166 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~ 166 (356)
|... ++. .+.+....|+++++|++-+.+.
T Consensus 318 Gt~~---------------vI~--~e~L~~MK~GAiLiNvGr~~~e 346 (477)
T PLN02494 318 GNKD---------------IIM--VDHMRKMKNNAIVCNIGHFDNE 346 (477)
T ss_pred CCcc---------------chH--HHHHhcCCCCCEEEEcCCCCCc
Confidence 5321 010 2333444478999999876433
No 456
>PRK13529 malate dehydrogenase; Provisional
Probab=94.73 E-value=0.38 Score=49.76 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC--ch------hHHHHHhcCCCCCeE---EEEeCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TP------GVTADISHMDTGAVV---RGFLGQ 103 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~----~~~~-----~el~L~D~~~--~~------g~~~dl~~~~~~~~v---~~~~~t 103 (356)
..||.+.|| |..|..+|..|.. .|+. ..++++|.+- .. .....+.+.. ... ......
T Consensus 295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~ 371 (563)
T PRK13529 295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV 371 (563)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence 469999999 9999999987765 4653 5899999875 11 1111122211 111 000112
Q ss_pred CChhhhhCCC--cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433 104 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165 (356)
Q Consensus 104 ~d~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~ 165 (356)
.++.++++++ |+.|=+.+.+ |. +-+++.+.|.+++++.+|+-.|||..
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQP---GA-----------FTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 5789999999 9988776544 21 24588889999999999999999997
No 457
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=94.72 E-value=0.57 Score=43.13 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=31.9
Q ss_pred eEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC--chhHHHHHh
Q 018433 46 KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN--TPGVTADIS 89 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~----~~~~~el~L~D~~~--~~g~~~dl~ 89 (356)
.+.|+||++.+|..++..|+. .+. .|++.+++. +.....++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~~~~~~~~~~l~ 49 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARNDEALRQLKAEIG 49 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCHHHHHHHHHHHH
Confidence 478999999999999999986 455 899999876 333344454
No 458
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.71 E-value=0.15 Score=50.66 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
...++|||+ |..+..-+..++.- +.+.+|.++|++. +...+.++.+.... ..+... .+.++++++||+|+.+
T Consensus 155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvta 230 (379)
T PRK06199 155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTYC 230 (379)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEEc
Confidence 458999999 98888777766653 3478999999987 45556666543111 134442 5678999999999975
Q ss_pred C
Q 018433 120 A 120 (356)
Q Consensus 120 a 120 (356)
.
T Consensus 231 T 231 (379)
T PRK06199 231 N 231 (379)
T ss_pred c
Confidence 4
No 459
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.71 E-value=0.074 Score=52.08 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
++||+|+||+|.+|..+...|...+ ...+|.++......|...+.. ...+... ..+ .+++.++|+||++.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~----~~~~~v~--~~~-~~~~~~~D~vf~a~p 78 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFE----GRDYTVE--ELT-EDSFDGVDIALFSAG 78 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeec----CceeEEE--eCC-HHHHcCCCEEEECCC
Confidence 4799999999999999998888754 345777775543222222221 1223321 123 256799999999875
No 460
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.70 E-value=0.42 Score=46.34 Aligned_cols=122 Identities=18% Similarity=0.315 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEEeCCC-chhHHHHHhc------CC--C------CCeEEEEe
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVN-TPGVTADISH------MD--T------GAVVRGFL 101 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~----~-~~~el~L~D~~~-~~g~~~dl~~------~~--~------~~~v~~~~ 101 (356)
..+.||+|||+ |+=|+++|..+... + ...+|.+.=..+ ..+...-|.+ .. + +..+.
T Consensus 19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nvv--- 94 (372)
T KOG2711|consen 19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVV--- 94 (372)
T ss_pred cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeE---
Confidence 34579999999 99999999877643 1 112333332222 2331111221 11 1 22333
Q ss_pred CCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC------CCCccHHHHHHH
Q 018433 102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN------PVNSTVPIAAEV 174 (356)
Q Consensus 102 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN------Pv~~~t~~~~~~ 174 (356)
..+|+.++.+|||++|+.. | -+.+..+++.|..+- |++..|-.+- |-..+ .++++.
T Consensus 95 Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i-~liS~i 157 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGI-RLISQI 157 (372)
T ss_pred ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCce-eehHHH
Confidence 3579999999999999974 3 123556777777665 5665554422 22111 122445
Q ss_pred HHHhCCCCCC
Q 018433 175 FKKAGTYDPK 184 (356)
Q Consensus 175 ~~~~~~~~~~ 184 (356)
..+..|+|-.
T Consensus 158 I~~~lgI~~~ 167 (372)
T KOG2711|consen 158 IHRALGIPCS 167 (372)
T ss_pred HHHHhCCCce
Confidence 5666677655
No 461
>PRK06046 alanine dehydrogenase; Validated
Probab=94.69 E-value=0.14 Score=49.77 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..+|+|||+ |..|...+..+.....+.++.++|++. +...+.++.+. ....+... +|++++++ +|+|+++.
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT 201 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence 458999999 999988888777555678999999987 34444444432 12234432 46778886 99999974
No 462
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.65 E-value=0.11 Score=46.67 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ 119 (356)
....+|+|||-+.-||..++..|+..+- .+.++|++... .....+.|... ..+. -+.++.+.++.||+||.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsA 133 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITG 133 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEc
Confidence 3456999999988999999999998875 89999987611 10011111110 0000 011266788999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~ 189 (356)
.|.|.-. -..++ ..|+++||.++--.|..- .+..+++.+.|- +|-
T Consensus 134 vG~~~~~--i~~d~-----------------ik~GavVIDVGi~~dvd~----~v~~~as~iTPv--VGp 178 (197)
T cd01079 134 VPSPNYK--VPTEL-----------------LKDGAICINFASIKNFEP----SVKEKASIYVPS--IGK 178 (197)
T ss_pred cCCCCCc--cCHHH-----------------cCCCcEEEEcCCCcCccH----hHHhhcCEeCCC--cCH
Confidence 9876310 11111 227888888862233321 122445556664 776
No 463
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.64 E-value=0.14 Score=44.52 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+..+|+|||- |+-|...|.+|...|+ +|+.-..........--.+. + . ..+..||.+.||+|+++.
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-f--~------v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-F--E------VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT----E------CCEHHHHHHC-SEEEE-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-C--e------eccHHHHHhhCCEEEEeC
Confidence 3469999999 9999999999999998 77666654432222211222 1 1 134679999999999984
No 464
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.61 E-value=0.1 Score=50.68 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=52.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..++|||+ |..+..-+..+..--.+.+|.++|+++ .+..+.++..... ..+.. .++.++|+++||+|+.+-
T Consensus 131 ~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v~a---~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 131 STLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAVGA---ADSAEEAVEGADIVVTAT 203 (330)
T ss_pred cEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-cccee---ccCHHHHhhcCCEEEEec
Confidence 37899999 988887777776655567999999988 5566666665432 23333 356789999999999864
No 465
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.59 E-value=1.8 Score=40.56 Aligned_cols=115 Identities=16% Similarity=0.064 Sum_probs=62.1
Q ss_pred CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChh----------hhhC
Q 018433 45 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE----------NALT 111 (356)
Q Consensus 45 ~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~----------~al~ 111 (356)
+.+.|+||+ +-+|..++..|+..|. .|++.|+++ ......++.+..... ......-+|.+ +.+.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 478999995 5799999999999887 899999874 111222222111101 11101112221 1234
Q ss_pred CCcEEEEcCCCCCC-----C--CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433 112 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 162 (356)
Q Consensus 112 ~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN 162 (356)
..|++|..+|.... + ..+. ...+..|+.....+.+.+...- .++.|+++|.
T Consensus 83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 67999999986421 1 1222 2345566554444444433322 2467777653
No 466
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.56 E-value=2.9 Score=38.66 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=78.6
Q ss_pred CCCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hh-------hh
Q 018433 43 AGFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LE-------NA 109 (356)
Q Consensus 43 ~~~KI~IIGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~-------~a 109 (356)
+.+.+.|+|| ++-+|..++..|+..|. .|++.++++ ......++..... ..+.....-+| .+ +.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVDKLEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHHH
Confidence 3457999996 46899999999999887 888887654 2222223322110 01111001112 21 12
Q ss_pred hCCCcEEEEcCCCCCC-----C---CCcHHH---HHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433 110 LTGMDLVIIPAGVPRK-----P---GMTRDD---LFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 174 (356)
Q Consensus 110 l~~aDiVIi~ag~~~~-----~---g~~r~~---~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~ 174 (356)
+...|++|..+|.... + ..+..+ .+..|.... +...+.+++ ..+.|+++|......
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~--~~g~Iv~iss~~~~~------- 152 (261)
T PRK08690 82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRG--RNSAIVALSYLGAVR------- 152 (261)
T ss_pred hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhh--cCcEEEEEccccccc-------
Confidence 3468999999986421 1 122221 233444433 333333332 236677776544321
Q ss_pred HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+.|..-.++.+.-.-..+-+.+|..+ .+..|++..+
T Consensus 153 -----~~~~~~~Y~asKaal~~l~~~la~e~--~~~gIrVn~i 188 (261)
T PRK08690 153 -----AIPNYNVMGMAKASLEAGIRFTAACL--GKEGIRCNGI 188 (261)
T ss_pred -----CCCCcccchhHHHHHHHHHHHHHHHh--hhcCeEEEEE
Confidence 12323345554333334566677665 3455554444
No 467
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.55 E-value=0.09 Score=51.31 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
++||+|+||+|.+|.-+...|...+ ...+|.++-..+..|.-+.+.. ..+... ..+. ++++++|+|+++.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~--~~~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR--EVDS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe--eCCh-HHhcCCCEEEEcCC
Confidence 4799999999999999999998654 3457777765442232222221 123321 1232 34789999999753
No 468
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.52 E-value=0.11 Score=49.53 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.+..+|+|+|++|.+|..++..|+..+. +|.+++.. +.++.+.+++||+||.+.|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVG 211 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccC
Confidence 3456999999944599999999988776 88888741 2345667899999999987
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV 164 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv 164 (356)
.|. .-.. ....|.++++-+. ||.
T Consensus 212 ~~~---~v~~-----------------~~lk~gavViDvg~n~~ 235 (283)
T PRK14192 212 KPE---LIKK-----------------DWIKQGAVVVDAGFHPR 235 (283)
T ss_pred CCC---cCCH-----------------HHcCCCCEEEEEEEeec
Confidence 442 1110 1134788888875 885
No 469
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.51 E-value=1.3 Score=40.30 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhh-------hh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL 110 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~-------al 110 (356)
.+.+.|+||++.+|..++..|+..|. +|++++++. +.....++.... ..+..+. ..+| .++ .+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999988999999999999987 899999876 222333332211 1111111 1112 211 12
Q ss_pred C-CCcEEEEcCCCCCCCC----CcHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 018433 111 T-GMDLVIIPAGVPRKPG----MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN 162 (356)
Q Consensus 111 ~-~aDiVIi~ag~~~~~g----~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN 162 (356)
. .-|++|..+|....++ .+..+ .+..|. ...+...+.+.+....+.|+++|.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3 6899999987422111 12211 223333 334445556655444567777764
No 470
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.47 E-value=0.26 Score=47.91 Aligned_cols=98 Identities=24% Similarity=0.309 Sum_probs=61.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
...++++|+|. |.+|..+|..+. +..-+|+.+|+... ....... ..+. .++++.++.||+|++.+.
T Consensus 144 l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~------~~~y----~~l~ell~~sDii~l~~P 209 (324)
T COG1052 144 LRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKEL------GARY----VDLDELLAESDIISLHCP 209 (324)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhc------Ccee----ccHHHHHHhCCEEEEeCC
Confidence 34579999999 999999999988 55569999998753 1111111 1121 236789999999999753
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS 166 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~ 166 (356)
. .+ ++| ..+- .+.+.+..|.+.+||.+ -=+|.
T Consensus 210 l--t~-~T~--------hLin--~~~l~~mk~ga~lVNtaRG~~VDe 243 (324)
T COG1052 210 L--TP-ETR--------HLIN--AEELAKMKPGAILVNTARGGLVDE 243 (324)
T ss_pred C--Ch-HHh--------hhcC--HHHHHhCCCCeEEEECCCccccCH
Confidence 2 11 111 1111 12334445789999886 34443
No 471
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.45 E-value=0.1 Score=50.73 Aligned_cols=73 Identities=26% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CCCCCeEEEEeCCCChhh-hhCCCcEEEEc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MDTGAVVRGFLGQPQLEN-ALTGMDLVIIP 119 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~~~~~v~~~~~t~d~~~-al~~aDiVIi~ 119 (356)
++||+|+||+|..|..+...|...+.. |+.++...+..|..+.-.+ ......++.. +-|.++ ...+||+||++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence 579999999999999999998887644 6888887654444332222 2111122221 123333 24569999996
No 472
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.42 E-value=0.38 Score=41.68 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.||.|||+ |.||...+..|+..+. +|++++.+..... .++. ...+.. ..-+ ++.+.++|+||.+.+
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~l-~~l~----~i~~~~--~~~~-~~dl~~a~lViaaT~ 79 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKEM-KELP----YITWKQ--KTFS-NDDIKDAHLIYAATN 79 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHHH-Hhcc----CcEEEe--cccC-hhcCCCceEEEECCC
Confidence 48999999 9999999999998887 8899975322221 2221 111211 1112 356899999999754
No 473
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.41 E-value=0.38 Score=44.80 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEeCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN 80 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~---------~~el~L~D~~~ 80 (356)
+.||.|||+ |-+|+.++..|+..|+ ..+|+++|.+.
T Consensus 11 ~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 359999999 9999999999987642 12999999875
No 474
>PRK07877 hypothetical protein; Provisional
Probab=94.41 E-value=0.12 Score=55.35 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=49.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhH---------------HHHHhcCCCCCeEEEEeC--
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---------------TADISHMDTGAVVRGFLG-- 102 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~~g~---------------~~dl~~~~~~~~v~~~~~-- 102 (356)
.||+|+|+ | +|++++..|+..|++.+|.|+|-+. +.-+ +..+........+..+..
T Consensus 108 ~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 49999999 9 9999999999999878999999875 1111 111222222334444321
Q ss_pred -CCChhhhhCCCcEEEEcC
Q 018433 103 -QPQLENALTGMDLVIIPA 120 (356)
Q Consensus 103 -t~d~~~al~~aDiVIi~a 120 (356)
..+..+-+.++|+||-+.
T Consensus 186 ~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 186 TEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred CHHHHHHHhcCCCEEEECC
Confidence 234555678999999874
No 475
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.40 E-value=0.16 Score=52.63 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..++|+|||. |.+|..+|..+..-|. +|+.+|.........++ .+.. .++++.++.||+|++....
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL----VSLDELLARADFITLHTPL 204 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE----EcHHHHHhhCCEEEEccCC
Confidence 4569999999 9999999999986666 99999975322111111 1121 1467889999999997532
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS 166 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~ 166 (356)
. + .+..++- .+.+....|++++||++ ..+|.
T Consensus 205 t--~---------~t~~li~--~~~l~~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 205 T--P---------ETRGLIG--AEELAKMKPGVRIINCARGGIIDE 237 (526)
T ss_pred C--h---------HhhcCcC--HHHHhcCCCCeEEEECCCCceeCH
Confidence 1 1 1111110 12333334788888886 44443
No 476
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.39 E-value=0.42 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=29.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
||+|+|+ |.||+.++..|+..|+ .+|.|+|.+.
T Consensus 32 ~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 32 HICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 8999999 9999999999999886 4899999874
No 477
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.39 E-value=0.32 Score=48.65 Aligned_cols=92 Identities=23% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
....+|+|+|. |.+|..++..+...|. +++.+|.++.+.... ..+. . .. .+.+++++++|+||.+.|
T Consensus 193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G---~--~v----~~leeal~~aDVVItaTG 259 (406)
T TIGR00936 193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG---F--RV----MTMEEAAKIGDIFITATG 259 (406)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC---C--Ee----CCHHHHHhcCCEEEECCC
Confidence 44569999999 9999999999987776 899999887321111 1111 1 11 134678999999998754
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433 122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163 (356)
Q Consensus 122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP 163 (356)
.+ .++.. +.+....|.+++++++-+
T Consensus 260 ~~---------------~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 NK---------------DVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence 22 11111 122223367899888754
No 478
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.38 E-value=0.017 Score=50.44 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=33.6
Q ss_pred hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 36 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 36 ~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
-..+++.++.||+|+|+ |.+|...+..+..-|. +++.+|.+.
T Consensus 12 ~~~~~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~ 53 (168)
T PF01262_consen 12 LGGPGGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP 53 (168)
T ss_dssp ECTTTEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred ccCCCCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence 35667788999999999 9999999988887777 899999865
No 479
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.44 Score=48.51 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-h--hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
..+|.|+|+ |.+|..+|..|...|. +++++|.... . .....+.+. .+....+. +. +...++|+||++.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence 348999999 9999999999988887 8999997651 1 111223332 12332222 21 2356899999998
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHH--HHHHHhCCCcEEEEecCCC--CccHHHHHHHHHH
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLC--EGIAKCCPNATVNLISNPV--NSTVPIAAEVFKK 177 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~--~~i~~~~p~a~viv~tNPv--~~~t~~~~~~~~~ 177 (356)
|.+..... ....-..+++++.++- ..+.+...+..+|-+|=.. .+.+.+++.++..
T Consensus 87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 87632211 1111234455554322 1221111244456665443 4555666666644
No 480
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.36 E-value=0.09 Score=51.49 Aligned_cols=71 Identities=24% Similarity=0.503 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.+||+|+||+|.+|..+...|... .. ..+|.++......|....+.. ..+... ..|. ++++++|+|+++++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~--~~~~-~~~~~~Divf~a~~ 77 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQ--EAKI-NSFEGVDIAFFSAG 77 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEE--eCCH-HHhcCCCEEEECCC
Confidence 479999999999999999988854 33 356888876553333322221 233332 1243 56799999999764
No 481
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.28 E-value=2.5 Score=39.54 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCChh-------h
Q 018433 41 GAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV-VRG-FLGQPQLE-------N 108 (356)
Q Consensus 41 ~~~~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~~-------~ 108 (356)
..+.+.+.|+||+ +-+|..++..|+..|. .|++.++++ ......++.+...... +.. .+...+.+ +
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH
Confidence 3444579999995 5799999999999988 888887653 1222222221110000 110 00001111 2
Q ss_pred hhCCCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHH
Q 018433 109 ALTGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK 177 (356)
Q Consensus 109 al~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~ 177 (356)
.+...|++|..+|.... + ..+ ....+..|+.....+++.+...- .++.|+++|.....
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~----------- 153 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE----------- 153 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc-----------
Confidence 23457999999986421 1 122 23345566655555555444332 34677777643211
Q ss_pred hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
.+.|..-.++.+.-....+-+.++..+. +..|++..+
T Consensus 154 -~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v 190 (272)
T PRK08159 154 -KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRVNAI 190 (272)
T ss_pred -cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEEEEe
Confidence 1233333455554444456667777763 445554444
No 482
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.28 E-value=0.2 Score=49.70 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
-..++|+|||. |+||+.+|..|..-|. ++..+|...... . . ... ..++++.++.||+|++..
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~~------~-~---~~~----~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRADR------G-D---EGD----FRSLDELVQEADILTFHT 175 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCccccc------c-c---ccc----cCCHHHHHhhCCEEEEeC
Confidence 35679999999 9999999999986666 999999632110 0 0 011 135788889999999854
No 483
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.28 E-value=0.15 Score=48.59 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=44.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
-+..+|+|||+++.||..++..|...+. .+..++.. |.++++.+++||+||.+.|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence 4457999999944499999999987775 67766642 2356788999999999998
Q ss_pred CC
Q 018433 122 VP 123 (356)
Q Consensus 122 ~~ 123 (356)
.|
T Consensus 211 ~p 212 (286)
T PRK14175 211 KP 212 (286)
T ss_pred CC
Confidence 76
No 484
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.28 E-value=0.19 Score=48.29 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
..++|+|+|- |.+|+.+|..+..-|. +++.+|..... .. .. .. ..++++.++.||+|++....
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~--~~-~~---~~~l~ell~~aDiv~~~lp~ 183 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG--IS-SI---YMEPEDIMKKSDFVLISLPL 183 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC--cc-cc---cCCHHHHHhhCCEEEECCCC
Confidence 4579999999 9999999987765566 99999975311 00 00 01 13578889999999997522
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCccH
Q 018433 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTV 168 (356)
Q Consensus 123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t 168 (356)
.+ +++ .++- .+.+....|++++||++ .++|.-.
T Consensus 184 --t~-~T~--------~li~--~~~l~~mk~ga~lIN~sRG~~vd~~a 218 (303)
T PRK06436 184 --TD-ETR--------GMIN--SKMLSLFRKGLAIINVARADVVDKND 218 (303)
T ss_pred --Cc-hhh--------cCcC--HHHHhcCCCCeEEEECCCccccCHHH
Confidence 11 111 1110 23333334789999996 6776553
No 485
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.25 E-value=0.3 Score=46.51 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+..++.|+|| |-.|.++++.|+..+. .+|.++|++. ++..+.++........+... ...++.+.+.++|+||.+.
T Consensus 126 ~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~~~divINaT 202 (283)
T PRK14027 126 KLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNAT 202 (283)
T ss_pred CCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEec-CHhHHHHHHhhcCEEEEcC
Confidence 3568999999 9899999999987764 4899999876 33333333221111112221 1112234567899999974
No 486
>PRK14851 hypothetical protein; Provisional
Probab=94.25 E-value=0.21 Score=53.27 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433 45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 80 (356)
Q Consensus 45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~ 80 (356)
.||+|+|+ |-+|+.++..|+..|+ .+++|+|-+.
T Consensus 44 ~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ 77 (679)
T PRK14851 44 AKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQ 77 (679)
T ss_pred CeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence 39999999 9999999999999998 5999999764
No 487
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.25 E-value=0.51 Score=49.03 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEeCCC--chhHHHHHhcC--CCCCeEEEEeCCCChhhh
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPGVTADISHM--DTGAVVRGFLGQPQLENA 109 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~-----~~~-----~~el~L~D~~~--~~g~~~dl~~~--~~~~~v~~~~~t~d~~~a 109 (356)
..||.+.|| |..|..++..|.. .|+ ...++++|.+- ..+..-++.+. .+..... ...++.++
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~ 396 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA 396 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence 479999999 9999999987765 354 25899999875 11110001111 0001111 12578999
Q ss_pred hCC--CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433 110 LTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 110 l~~--aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
+++ +|++|=+.+.+ |. +-+++.+.|.+++++.+|+-.|||.
T Consensus 397 v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 397 VKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPT 439 (581)
T ss_pred HhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCC
Confidence 999 89988876544 21 2458888899999999999999998
No 488
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.25 E-value=0.38 Score=39.35 Aligned_cols=72 Identities=25% Similarity=0.303 Sum_probs=38.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
||+|+|++|.+|..++..|...+.+ +++-+ +.+...+......+.... .....+ ...+++ ..++|+||++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE--ELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCccccccccccc-ccCChh--hcCCCEEEEcCC
Confidence 6899998799999998888875433 44444 654322221111221110 001111 113332 359999999753
No 489
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.24 E-value=3.3 Score=38.26 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=78.9
Q ss_pred CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hh-------hhh
Q 018433 45 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NAL 110 (356)
Q Consensus 45 ~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------~al 110 (356)
+.+.|+||+ +-+|..++..|+..|. .|++.+++. ......++.+......+..+. .-+| .+ +.+
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 478999995 5899999999999887 889988653 111111221110011111110 0111 11 123
Q ss_pred CCCcEEEEcCCCCCC-----C--CCcHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433 111 TGMDLVIIPAGVPRK-----P--GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAG 179 (356)
Q Consensus 111 ~~aDiVIi~ag~~~~-----~--g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~ 179 (356)
...|++|..+|.... + ..+.. ..+..|......+.+.+... .+.+.|+++|.-....
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------ 153 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER------------ 153 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc------------
Confidence 457999999886421 1 12222 22334444433333333322 2357788877543321
Q ss_pred CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217 (356)
Q Consensus 180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi 217 (356)
+.|..-.++.+...-..|-+.+|..+. +..|++..+
T Consensus 154 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~v 189 (257)
T PRK08594 154 VVQNYNVMGVAKASLEASVKYLANDLG--KDGIRVNAI 189 (257)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEEeee
Confidence 122222345544444456677777763 444544433
No 490
>PRK07041 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.34 Score=43.59 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=60.3
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCChhhhhC---CCcEEEEc
Q 018433 49 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLENALT---GMDLVIIP 119 (356)
Q Consensus 49 IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~---~aDiVIi~ 119 (356)
|+||+|.+|+.++..|+..|. +|++++++. ......++... ..+..+. ...++.++++ ..|++|..
T Consensus 2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGGG---APVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 899999999999999999887 899999875 22222233211 1122111 1122333333 36999999
Q ss_pred CCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433 120 AGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161 (356)
Q Consensus 120 ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t 161 (356)
+|..... ..+ -...+..|......+.+ +......+.|++++
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s 123 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS 123 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence 8863211 111 22345566665555655 22233445566554
No 491
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.23 E-value=0.16 Score=50.99 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 121 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag 121 (356)
.+..||.|+|+ |.+|..++..|...|. .+|.++++... .+..+........+.. ..++.+.+.++|+||.+.+
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~--ra~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~ 251 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIE--KAQKITSAFRNASAHY---LSELPQLIKKADIIIAAVN 251 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcC
Confidence 34569999999 9999999999988775 38999998652 2223332210011111 2456788999999999887
Q ss_pred CC
Q 018433 122 VP 123 (356)
Q Consensus 122 ~~ 123 (356)
.|
T Consensus 252 a~ 253 (414)
T PRK13940 252 VL 253 (414)
T ss_pred CC
Confidence 66
No 492
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=94.22 E-value=0.41 Score=46.85 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=42.7
Q ss_pred CeEEEEcCCCch--------------------HHHHHHHHHhCCCCcEEEEEeCCCc--hh-HHHHHhcCCCCCeEEEEe
Q 018433 45 FKVAILGAAGGI--------------------GQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFL 101 (356)
Q Consensus 45 ~KI~IIGa~G~v--------------------G~~~a~~l~~~~~~~el~L~D~~~~--~g-~~~dl~~~~~~~~v~~~~ 101 (356)
|||+|-|| |+- |..+|..|+..|+ +|+++|++.. .. ....+... .++.
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~-- 71 (342)
T PRK12557 1 MKVSVYGA-GNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV-- 71 (342)
T ss_pred CeeEEEcC-cchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE--
Confidence 68888888 742 5667777877777 9999998762 11 11122221 1232
Q ss_pred CCCChhhhhCCCcEEEEcC
Q 018433 102 GQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 102 ~t~d~~~al~~aDiVIi~a 120 (356)
++|..+++++||+||++.
T Consensus 72 -asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFT 89 (342)
T ss_pred -eCCHHHHHhCCCEEEEEC
Confidence 235568889999999984
No 493
>PLN00203 glutamyl-tRNA reductase
Probab=94.20 E-value=0.23 Score=51.28 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
...+|+|||+ |.+|..++..|...|. .+|++++++. +...+..+. ...+... ...++.+++.++|+||.+.
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~----g~~i~~~-~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP----DVEIIYK-PLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC----CCceEee-cHhhHHHHHhcCCEEEEcc
Confidence 3579999999 9999999998887764 4799999875 222222221 1122221 1246678899999999876
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCCCCcc
Q 018433 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNST 167 (356)
Q Consensus 121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNPv~~~ 167 (356)
+.+. |= +..+..+.+.+. ...-.+|-++.|=|+-
T Consensus 338 ~s~~-pv------------I~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 338 SSET-PL------------FLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCCC-Ce------------eCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 5432 10 112223333211 1123677789998765
No 494
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.18 E-value=0.33 Score=51.39 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh----hhhhCCCcEEEEc
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP 119 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVIi~ 119 (356)
..+|.|+|. |.+|+.++..|...+. +++++|.|+.. +..+.+.. ..-+.+ . .+|. +..+.+||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G-D-at~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG-D-ATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE-e-CCCHHHHHhcCCCcCCEEEEE
Confidence 468999999 9999999999998887 89999998621 22222221 112222 1 2332 1245689999988
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 198 (356)
Q Consensus 120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~ 198 (356)
...+ ..|. .++..+++..|+..++.-+ |+.+ . +.+++. | -+.++--+...+.++.
T Consensus 472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~-~-----~~L~~~-G--ad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDH-Y-----IRLRQA-G--VEKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHH-H-----HHHHHC-C--CCEEehhhHhHHHHHH
Confidence 5322 3443 3555667778988766554 4433 1 123332 3 2345444555555666
Q ss_pred HHHHHHhCCCCCCC
Q 018433 199 TFVAEVLGLDPRDV 212 (356)
Q Consensus 199 ~~la~~l~v~~~~v 212 (356)
+.+-+.+|++++++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (621)
T PRK03562 528 RLVLESLGLGPYEA 541 (621)
T ss_pred HHHHHHcCCCHHHH
Confidence 66667788776544
No 495
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.17 E-value=1.3 Score=42.37 Aligned_cols=119 Identities=16% Similarity=0.252 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEE----eCCCChhhhhCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGF----LGQPQLENALTG 112 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~----~~t~d~~~al~~ 112 (356)
....|.|+||++-+|..+|+.++..+- .++|.|+|. .+..+..+.+.. ..+++... ......++...+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 445899999988999999999998887 899999998 344444444321 00111100 000123455689
Q ss_pred CcEEEEcCCCC-CCCC--CcHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433 113 MDLVIIPAGVP-RKPG--MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV 164 (356)
Q Consensus 113 aDiVIi~ag~~-~~~g--~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNPv 164 (356)
.|++|..||.. -++. .++.+ .+..| ...++...+.+.+. +++.|+.++.-.
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~a 175 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVA 175 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhh
Confidence 99999999963 3333 22222 12233 45677888888765 477776665433
No 496
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.16 E-value=0.22 Score=42.37 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~ 122 (356)
+.++|+|+|.+..+|..++..|...+. ++.++|.+ |.|+++++++||+||.+.|.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPK 81 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCC
Confidence 356899999988999999999887765 66666643 23567889999999999886
Q ss_pred C
Q 018433 123 P 123 (356)
Q Consensus 123 ~ 123 (356)
+
T Consensus 82 ~ 82 (140)
T cd05212 82 P 82 (140)
T ss_pred C
Confidence 5
No 497
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.15 E-value=0.3 Score=49.38 Aligned_cols=129 Identities=21% Similarity=0.185 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433 44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123 (356)
Q Consensus 44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~ 123 (356)
.+||+|+|- |.-|.+++..|...|. ++..+|.++......+... ....+....+..+. +.+.++|+||.+-|+|
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhhh--hccCceeecCccch-hccccCCEEEECCCCC
Confidence 679999999 9999999999999887 9999998772211111110 11223332233333 6789999999998887
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHHHHHHHHhCCC
Q 018433 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTY 181 (356)
Q Consensus 124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~t~~~~~~~~~~~~~ 181 (356)
...-.- .......++++-++--..+.. +.+.+|-+ ||==.+.|.++++.+ +..|+
T Consensus 81 ~~~p~v-~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l-~~~G~ 137 (448)
T COG0771 81 PTHPLV-EAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLL-KAAGL 137 (448)
T ss_pred CCCHHH-HHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHH-HhcCC
Confidence 433211 122345666666666666543 22223344 466566666666655 44555
No 498
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.11 E-value=0.24 Score=47.08 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+..++.|+|| |-+|.++++.|+..+. .+|.+++++. ++..+.++... ..+.......++.+.+.++|+||.+.
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECC
Confidence 4568999999 9999999999988774 4899999875 33333333221 11221111123345678999999975
Q ss_pred CC
Q 018433 121 GV 122 (356)
Q Consensus 121 g~ 122 (356)
..
T Consensus 199 p~ 200 (282)
T TIGR01809 199 PA 200 (282)
T ss_pred CC
Confidence 43
No 499
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.07 E-value=0.2 Score=49.76 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
...++|+|||. |+||+.++..+..-|. +++.+|..... . .. ... + .++++.+++||+|++..
T Consensus 114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~-~---~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD-F---VSLERILEECDVISLHT 175 (381)
T ss_pred cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc-c---cCHHHHHhhCCEEEEeC
Confidence 34579999999 9999999999987677 99999974310 0 00 011 1 35778889999999964
No 500
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.06 E-value=0.27 Score=46.25 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433 43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120 (356)
Q Consensus 43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a 120 (356)
+.+++.|+|+ |.+|.+++..|+..+. ++.++|++. ++..+.++... ..+... +.+ +..+.++|+||.+.
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~---~~~~~~--~~~-~~~~~~~DivInat 186 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRY---GEIQAF--SMD-ELPLHRVDLIINAT 186 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc---CceEEe--chh-hhcccCccEEEECC
Confidence 3568999999 9999999999998775 899999875 23333333221 112222 111 23456899999986
Q ss_pred CC
Q 018433 121 GV 122 (356)
Q Consensus 121 g~ 122 (356)
+.
T Consensus 187 p~ 188 (270)
T TIGR00507 187 SA 188 (270)
T ss_pred CC
Confidence 54
Done!