Query 018434
Match_columns 356
No_of_seqs 161 out of 1562
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02284 glutamine synthetase 100.0 2.6E-94 5.7E-99 704.7 38.6 354 1-354 1-354 (354)
2 PLN03036 glutamine synthetase; 100.0 1E-92 2.2E-97 703.9 39.0 356 1-356 61-416 (432)
3 COG0174 GlnA Glutamine synthet 100.0 4E-89 8.7E-94 679.3 33.8 330 14-354 11-360 (443)
4 TIGR00653 GlnA glutamine synth 100.0 3E-87 6.5E-92 674.7 32.5 328 16-354 10-374 (460)
5 PRK09469 glnA glutamine synthe 100.0 9E-86 2E-90 664.9 33.9 329 16-354 13-382 (469)
6 TIGR03105 gln_synth_III glutam 100.0 6.7E-85 1.5E-89 654.0 31.1 321 16-354 8-353 (435)
7 PF00120 Gln-synt_C: Glutamine 100.0 4E-71 8.6E-76 521.5 17.1 240 103-351 1-259 (259)
8 KOG0683 Glutamine synthetase [ 100.0 1.9E-55 4E-60 416.4 21.2 348 5-354 18-369 (380)
9 COG3968 Uncharacterized protei 99.7 1.8E-15 4E-20 147.5 16.8 216 123-352 215-500 (724)
10 PF03951 Gln-synt_N: Glutamine 99.6 5.4E-15 1.2E-19 116.2 9.1 78 17-97 1-84 (84)
11 TIGR02050 gshA_cyan_rel unchar 98.8 1.3E-07 2.7E-12 90.8 15.9 187 125-352 1-249 (287)
12 PRK13517 carboxylate-amine lig 98.6 6.9E-07 1.5E-11 88.8 13.9 132 123-288 10-167 (373)
13 PRK13515 carboxylate-amine lig 98.5 1.9E-06 4.1E-11 85.6 15.0 131 123-288 5-161 (371)
14 PRK13516 gamma-glutamyl:cystei 98.5 7E-06 1.5E-10 81.6 16.8 83 123-232 11-94 (373)
15 PRK13518 carboxylate-amine lig 98.2 3.1E-05 6.8E-10 76.4 15.4 94 187-287 49-168 (357)
16 TIGR02048 gshA_cyano glutamate 98.1 9.5E-05 2.1E-09 73.6 14.9 91 188-285 31-147 (376)
17 PLN02611 glutamate--cysteine l 98.1 5.2E-05 1.1E-09 77.4 12.8 137 120-287 64-245 (482)
18 PF04107 GCS2: Glutamate-cyste 97.5 0.00045 9.7E-09 66.3 8.2 95 187-287 35-158 (288)
19 TIGR01436 glu_cys_lig_pln glut 97.4 0.0032 6.9E-08 64.1 14.5 91 121-232 19-124 (446)
20 COG2170 Uncharacterized conser 97.0 0.0026 5.5E-08 61.9 8.3 188 123-352 2-252 (369)
21 TIGR03444 gshA_related glutama 96.6 0.009 2E-07 59.5 8.9 44 188-232 63-107 (390)
22 KOG0683 Glutamine synthetase [ 92.4 0.046 1E-06 53.4 0.6 58 287-354 285-342 (380)
23 PF06877 RraB: Regulator of ri 89.3 2 4.3E-05 34.4 7.4 95 106-231 2-98 (104)
24 cd04869 ACT_GcvR_2 ACT domains 87.8 1.2 2.6E-05 33.6 5.0 65 170-236 11-81 (81)
25 PF13740 ACT_6: ACT domain; PD 85.3 2.6 5.7E-05 31.8 5.6 62 170-234 14-75 (76)
26 PRK02471 bifunctional glutamat 80.3 4 8.7E-05 44.6 6.6 17 123-139 18-34 (752)
27 TIGR02778 ligD_pol DNA polymer 78.9 9.3 0.0002 35.9 7.7 112 194-319 113-224 (245)
28 cd04861 LigD_Pol_like LigD_Pol 78.3 10 0.00022 35.3 7.7 113 194-320 97-209 (227)
29 cd04872 ACT_1ZPV ACT domain pr 77.8 3.8 8.2E-05 31.7 4.2 67 170-237 13-79 (88)
30 cd04870 ACT_PSP_1 CT domains f 77.7 5.6 0.00012 29.8 5.0 65 170-236 11-75 (75)
31 cd04862 PaeLigD_Pol_like PaeLi 76.7 12 0.00026 34.8 7.7 113 194-320 97-209 (227)
32 COG3572 GshA Gamma-glutamylcys 76.5 4.1 8.9E-05 40.7 4.8 45 189-234 91-136 (456)
33 PRK00194 hypothetical protein; 75.3 5.1 0.00011 31.0 4.3 66 170-236 15-80 (90)
34 cd04866 LigD_Pol_like_3 LigD_P 74.9 14 0.00031 34.2 7.7 111 194-320 92-205 (223)
35 KOG0558 Dihydrolipoamide trans 73.2 3.3 7.1E-05 40.7 3.2 27 211-237 276-302 (474)
36 cd04863 MtLigD_Pol_like MtLigD 72.0 20 0.00042 33.5 7.9 109 194-319 101-212 (231)
37 PF12224 Amidoligase_2: Putati 71.9 50 0.0011 30.4 10.9 22 327-348 225-246 (252)
38 cd04865 LigD_Pol_like_2 LigD_P 71.4 20 0.00043 33.4 7.8 112 194-319 98-209 (228)
39 cd04864 LigD_Pol_like_1 LigD_P 71.2 20 0.00043 33.4 7.7 111 194-319 99-209 (228)
40 cd04893 ACT_GcvR_1 ACT domains 70.3 13 0.00028 28.1 5.4 63 170-235 13-75 (77)
41 PRK11191 RNase E inhibitor pro 66.0 53 0.0012 28.2 8.7 92 109-231 13-107 (138)
42 PF04468 PSP1: PSP1 C-terminal 58.7 11 0.00025 29.5 3.2 59 169-232 25-83 (88)
43 cd04875 ACT_F4HF-DF N-terminal 54.7 28 0.00061 25.7 4.7 60 170-231 11-73 (74)
44 COG3364 Zn-ribbon containing p 53.2 8.1 0.00018 31.3 1.5 24 180-204 55-78 (112)
45 PF03484 B5: tRNA synthetase B 53.2 42 0.00091 24.9 5.4 47 173-230 22-70 (70)
46 smart00874 B5 tRNA synthetase 52.9 31 0.00068 25.3 4.6 48 173-230 22-71 (71)
47 cd04882 ACT_Bt0572_2 C-termina 44.7 53 0.0012 22.9 4.7 50 172-232 13-64 (65)
48 TIGR02776 NHEJ_ligase_prk DNA 43.3 1.1E+02 0.0023 32.4 8.3 109 194-318 390-501 (552)
49 PRK11589 gcvR glycine cleavage 41.6 71 0.0015 28.8 5.9 68 169-238 106-179 (190)
50 TIGR03103 trio_acet_GNAT GNAT- 40.6 2.5E+02 0.0054 29.5 10.7 77 169-251 241-350 (547)
51 PRK13011 formyltetrahydrofolat 40.5 46 0.001 32.0 4.8 65 170-236 19-85 (286)
52 PRK09633 ligD ATP-dependent DN 39.7 1.1E+02 0.0023 32.9 7.7 111 194-318 431-542 (610)
53 PRK09632 ATP-dependent DNA lig 39.2 1.4E+02 0.003 33.0 8.6 111 195-319 135-245 (764)
54 TIGR01619 hyp_HI0040 conserved 38.1 2.1E+02 0.0045 27.1 8.6 89 111-230 143-239 (249)
55 PF14395 COOH-NH2_lig: Phage p 36.1 54 0.0012 31.1 4.3 56 199-256 52-108 (261)
56 PRK05972 ligD ATP-dependent DN 34.5 1.5E+02 0.0032 33.2 8.0 71 179-256 663-738 (860)
57 PRK06027 purU formyltetrahydro 34.2 92 0.002 29.9 5.8 65 170-236 18-85 (286)
58 cd04908 ACT_Bt0572_1 N-termina 30.2 1.7E+02 0.0037 20.8 5.4 52 171-233 14-65 (66)
59 PF09845 DUF2072: Zn-ribbon co 29.5 24 0.00053 29.9 0.8 21 182-203 82-102 (131)
60 PF14528 LAGLIDADG_3: LAGLIDAD 28.8 1E+02 0.0022 22.7 4.1 36 169-204 31-66 (77)
61 PF11679 DUF3275: Protein of u 28.5 43 0.00094 30.8 2.3 30 96-125 173-205 (214)
62 PF11657 Activator-TraM: Trans 28.3 38 0.00082 29.3 1.8 18 216-233 4-21 (144)
63 TIGR00629 uvde UV damage endon 27.8 5.8E+02 0.013 24.9 10.1 91 172-285 54-146 (312)
64 cd04888 ACT_PheB-BS C-terminal 26.1 1.3E+02 0.0027 21.8 4.2 37 170-206 12-51 (76)
65 PRK13895 conjugal transfer pro 25.7 47 0.001 28.6 1.9 17 217-233 5-21 (144)
66 cd04871 ACT_PSP_2 ACT domains 24.3 1.5E+02 0.0032 22.8 4.3 61 169-234 11-82 (84)
67 COG4519 Uncharacterized protei 23.6 2.3E+02 0.0049 22.2 5.0 24 105-134 34-57 (95)
68 PF00311 PEPcase: Phosphoenolp 23.4 1.1E+02 0.0024 33.9 4.6 61 169-235 416-482 (794)
69 cd04933 ACT_AK1-AT_1 ACT domai 23.3 3.4E+02 0.0073 20.6 6.4 36 170-207 16-51 (78)
70 cd02646 R3H_G-patch R3H domain 22.1 73 0.0016 22.8 2.1 41 198-255 17-57 (58)
71 COG4456 VagC Virulence-associa 21.5 69 0.0015 24.5 1.9 28 308-336 7-34 (74)
72 cd04932 ACT_AKiii-LysC-EC_1 AC 21.2 2.9E+02 0.0062 20.6 5.3 35 171-207 17-51 (75)
73 cd04883 ACT_AcuB C-terminal AC 20.7 3.2E+02 0.0069 19.3 6.1 52 172-234 15-70 (72)
74 cd04916 ACT_AKiii-YclM-BS_2 AC 20.5 1.8E+02 0.0038 20.2 3.9 38 170-207 16-53 (66)
75 cd04889 ACT_PDH-BS-like C-term 20.3 2.2E+02 0.0048 19.3 4.3 40 172-211 12-52 (56)
76 COG4326 Spo0M Sporulation cont 20.3 1.3E+02 0.0029 27.7 3.8 38 169-206 154-198 (270)
77 cd04924 ACT_AK-Arch_2 ACT doma 20.1 2.3E+02 0.0049 19.6 4.4 38 170-207 16-53 (66)
No 1
>PLN02284 glutamine synthetase
Probab=100.00 E-value=2.6e-94 Score=704.75 Aligned_cols=354 Identities=94% Similarity=1.545 Sum_probs=317.2
Q ss_pred ChhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeec
Q 018434 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~ 80 (356)
||..++..+++++++.+...+.|+|+|+.++++|||.+.+..+.+.+++.++|+||||++++..++++|++|+|||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~ 80 (354)
T PLN02284 1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (354)
T ss_pred CchhhhhHhhcccCcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEEC
Confidence 45566677777779999999999999999999999999999998888888999999999988778899999999999999
Q ss_pred CCCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccc
Q 018434 81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG 160 (356)
Q Consensus 81 Pw~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
||.++++++|+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+.+...+.+++.++.+.++++||+.
T Consensus 81 Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~ 160 (354)
T PLN02284 81 PFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCG 160 (354)
T ss_pred CCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccC
Confidence 99875689999999999999999999999999999999999999999999999998653223344433456677788777
Q ss_pred cCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018434 161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~ 240 (356)
.+.+..+.++++++++++|+++||+|+++|||+|||||||++.|.++|+|||++++||++||+||++||++|||||||+.
T Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~ 240 (354)
T PLN02284 161 VGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240 (354)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC
Confidence 66544556899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 320 (356)
Q Consensus 241 g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~ 320 (356)
++++|||||+|+|||+.+.+++.+.++++++|+.|+|+++++||++||||||+|++|||.+++++||.+||+++||||..
T Consensus 241 ~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~ 320 (354)
T PLN02284 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRD 320 (354)
T ss_pred CCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCC
Confidence 55799999999999975434577889999999989999999999999999999999999667999999999999999976
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 321 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
.+..+++|||+|+||++|||||++|++|++++.+
T Consensus 321 ~~~~~~~riE~R~pd~~aNPYLa~aaila~~~~~ 354 (354)
T PLN02284 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (354)
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHHhcC
Confidence 6433357999999999999999999999999863
No 2
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=1e-92 Score=703.89 Aligned_cols=356 Identities=80% Similarity=1.405 Sum_probs=324.2
Q ss_pred ChhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeec
Q 018434 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~ 80 (356)
|+.+++|++++..+|++.+.++|+|+|.+|..+|||++.+..+.+.++++++|+||||++++.+++++|++|+|||++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~ 140 (432)
T PLN03036 61 VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 140 (432)
T ss_pred hhhHHHHhhhcccccCCeEEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEEC
Confidence 46789999999999999999999999999988999999999999889889999999999999888999999999999999
Q ss_pred CCCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccc
Q 018434 81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG 160 (356)
Q Consensus 81 Pw~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
||+++++++|+||++++||+|++.|||.+|++++++++.+|+++++|+|+|||||+.+...+.||+.+..|.++++||+.
T Consensus 141 Pw~~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~ 220 (432)
T PLN03036 141 PFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCG 220 (432)
T ss_pred CcCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCC
Confidence 99876689999999999999999999999999999999999999999999999998654334566655567788888877
Q ss_pred cCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018434 161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~ 240 (356)
.+.+..+.++++++++++|+++||+|+++|+|+|||||||++.|+++|+|||++++||++||+||++||++|||||||+.
T Consensus 221 ~~~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~ 300 (432)
T PLN03036 221 AGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE 300 (432)
T ss_pred chhhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC
Confidence 76665556899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 320 (356)
Q Consensus 241 g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~ 320 (356)
+|++|||||+|+|||+.+++++.+.++++++|++++|+++++||++||||||++++|+|.|.+++||.+||+++||||..
T Consensus 301 gd~~GSGmHiH~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~ 380 (432)
T PLN03036 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRD 380 (432)
T ss_pred CCcCCCCceeEechhhccccchHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCC
Confidence 56899999999999985544577888999999669999999999999999999999997668999999999999999976
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018434 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356 (356)
Q Consensus 321 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~G~~ 356 (356)
....+++|||+|.||++|||||++|+|+.+.+..+|
T Consensus 381 ~~~~~~~riE~R~pda~aNPYLv~aai~~t~~~~~~ 416 (432)
T PLN03036 381 TEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEP 416 (432)
T ss_pred CCCCcccEEEEeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 633335799999999999999999999999987755
No 3
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-89 Score=679.25 Aligned_cols=330 Identities=28% Similarity=0.443 Sum_probs=290.4
Q ss_pred CCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCC--cccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCCeE
Q 018434 14 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLP--KWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGNNI 88 (356)
Q Consensus 14 ~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~--~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a 88 (356)
++.+|++|+++|+|+.| .+|||++|+..+.+.++... +..||||++ ||...+++|++|+|| |++++||.++++|
T Consensus 11 ~~~~V~~v~~~f~D~~G-~~r~k~ip~~~~~~~~~~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T~~~~Pw~~~~ta 89 (443)
T COG0174 11 KENGVKFVDLRFTDLNG-VLRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLKPDLSTLVVDPWREGPTA 89 (443)
T ss_pred HhCCceEEEEEEECCCC-CeeeEEEecccchhHHHhhhccCcCcCCccccccCCCCCCCEEEeeccCceeeCCCCCCCcE
Confidence 56889999999999999 99999999986433333322 346899988 777668999999999 8999999998899
Q ss_pred EEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCc-ceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhh
Q 018434 89 LVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAW 167 (356)
Q Consensus 89 ~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (356)
+|+||+++++|+|++.|||++|||++++++++|+. +.+|+|+|||||+.+..... .+.+.++++||+..+.+.
T Consensus 90 ~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~----~~~~~~~~~yf~~~~~~~-- 163 (443)
T COG0174 90 RVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPD----GGRPADKGGYFDVAPLDE-- 163 (443)
T ss_pred EEEEEEECCCCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCcc----cCccCCCCcccCcccccc--
Confidence 99999999999999999999999999999999998 59999999999998543111 135677889998887765
Q ss_pred HHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCce
Q 018434 168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAG 247 (356)
Q Consensus 168 ~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG 247 (356)
.++++++|+.+|+++||+||.+|||+|||||||++++.++|++||++++||++||+||++||++|||||||+.| .+|||
T Consensus 164 ~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFMpKP~~g-~~GSG 242 (443)
T COG0174 164 AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFG-DNGSG 242 (443)
T ss_pred HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeCCCCCC-CCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred eeecccCcccC--C----C-C--chH-HHHHHHHHHHHHHHHhcccccc---cccccC-CCCCCCCCCCceeeccCCCcc
Q 018434 248 AHANYSTKSMR--N----D-G--GFE-VIKKAIEKLGLRHSEHIAAYGE---GNERRL-TGKHETADINTFKWGVANRGA 313 (356)
Q Consensus 248 ~H~H~Sl~~~~--~----~-~--~~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl-~~~~~a~~~~~~~WG~~NRs~ 313 (356)
||+|+|||+.+ + + + +++ .+++||||| |+|+++++||++ |||||| +|..||| ++++||.+|||+
T Consensus 243 MH~H~Sl~~~dg~nlF~d~~~~~~lS~~~~~~igGi-lkha~~~~ai~~PtvNSYkRl~vp~e~AP--~~~~wg~~NRsa 319 (443)
T COG0174 243 MHVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGI-LKHAPALTAITAPTVNSYKRLGVPYEWAP--TYIAWGVRNRSA 319 (443)
T ss_pred eeEEEEEecCCCCccccCCCCcccHHHHHHHHHHHH-HHHHHHHHhHhCCCcchhhhcCCCcccCc--chhcccccCcce
Confidence 99999999643 1 2 2 343 469999999 999999999986 999999 5635587 999999999999
Q ss_pred eeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 314 SIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 314 ~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
+||||.+.....++|||+|+||+++||||++||+|+|||+|
T Consensus 320 ~iRIP~~~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~G 360 (443)
T COG0174 320 SVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDG 360 (443)
T ss_pred EEEeCCCCCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999884323357999999999999999999999999999
No 4
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=3e-87 Score=674.67 Aligned_cols=328 Identities=22% Similarity=0.318 Sum_probs=283.0
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCC-CCCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCCeEEEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~v~ 91 (356)
.+|++|+++|+|++| ++|||.+|++.+.+ .++ .+.+|+++++ ++...+++|++++|| |++++||.++++|+|+
T Consensus 10 ~~i~~v~~~~~Dl~G-~~rgk~vp~~~~~~~~~~--~G~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~~~~a~v~ 86 (460)
T TIGR00653 10 ENVKFVDLRFTDIKG-KPQHVEIPASALDKEAFE--EGIMFDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVI 86 (460)
T ss_pred CCCcEEEEEEECCCC-CEeeEEEeHHHhhHHHhc--CCeecccccccccccCCCCcEEEeccCCcceeccCCCCCcEEEE
Confidence 579999999999999 99999999987653 232 2567888877 665667899999999 7999999765699999
Q ss_pred EEEecC-CCCcCCCCHHHHHHHHHHhhh-hcCCcceEeeeeeEEEeccCCCCCC-------------------CCCCCCC
Q 018434 92 CDAYTP-AGEPIPTNKRHAAAKIFSHSD-VVAEEPWYGIEQEYTLLQKDVKWPL-------------------GWPIGGY 150 (356)
Q Consensus 92 ~d~~~~-~G~p~~~~PR~~Lkr~l~~~~-~~G~~~~~g~E~EF~l~~~~~~~~~-------------------~~~~~~~ 150 (356)
||+++. ||+|++.|||++|||++++++ ++|+++++|+|+|||||+.+..... ++ .+..
T Consensus 87 ~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 165 (460)
T TIGR00653 87 CDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGN-RGYK 165 (460)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccccccccCCc-CCCc
Confidence 999998 999999999999999999999 9999999999999999986432100 10 0123
Q ss_pred CCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCc
Q 018434 151 PGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGV 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl 230 (356)
+.+.+.||+....+. ..+++++|+++|+++||+|+++|+|+|||||||++.|+++|+|||++++||++||+||++||+
T Consensus 166 ~~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~ 243 (460)
T TIGR00653 166 PRDKGGYFPVAPTDT--AVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGK 243 (460)
T ss_pred ccCCccccCCCCccc--HHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444554665554443 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccccCCCCCCceeeecccCcccC-----CC---CchH-HHHHHHHHHHHHHHHhcccccc---cccccCCCCCCC
Q 018434 231 VLSFDPKPIQGDWNGAGAHANYSTKSMR-----ND---GGFE-VIKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHET 298 (356)
Q Consensus 231 ~ATFmpKP~~g~~~GsG~H~H~Sl~~~~-----~~---~~~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a 298 (356)
+|||||||+. +.+|||+|+|+|||+.. ++ .+++ ..++||||| |+|++++++|++ ||||||+|++||
T Consensus 244 ~ATFmpKP~~-~~~GSG~H~H~Sl~d~g~n~F~d~~~~~~lS~~~~~fiaGi-L~h~~~l~a~~~PtvNSYkRl~p~~~a 321 (460)
T TIGR00653 244 TATFMPKPLF-GDNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGI-LKHAKALAAFTNPTVNSYKRLVPGYEA 321 (460)
T ss_pred EEEEecccCC-CCCcCceeEEECccCCCeeccCCCCCCcccCHHHHHHHHHH-HHHHHHhhhHhcCCCcchhhcCCCCcC
Confidence 9999999999 58999999999999842 11 2343 459999999 999999999985 999999999999
Q ss_pred CCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 299 ADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 299 ~~~~~~~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
| ++++||.+||+++||||.... ...+|||+|++|++|||||++||+|+||++|
T Consensus 322 p--~~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYLalAa~laAGl~G 374 (460)
T TIGR00653 322 P--VYLAYSARNRSALIRIPASGN-PKAKRIEFRFPDPSANPYLAFAAMLMAGLDG 374 (460)
T ss_pred c--ceeecccCCCCceEEecCCCC-CcCceEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 9 899999999999999997542 2357999999999999999999999999999
No 5
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=9e-86 Score=664.89 Aligned_cols=329 Identities=21% Similarity=0.281 Sum_probs=280.1
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCC-CCCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCCeEEEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~v~ 91 (356)
.+|++|++.|+|++| ++|||.+|.+.+.+ .++ .+..|+++++ |+...+++|++++|| |++++||.+.++|+|+
T Consensus 13 ~~i~~v~~~~~Dl~G-~~rgk~ip~~~~~~~~~~--~G~~f~~~~~~g~~~~~~~D~~l~PD~~Tl~~~Pw~~~~~a~v~ 89 (469)
T PRK09469 13 HEVKFVDLRFTDTKG-KEQHVTIPAHQVNADFFE--EGKMFDGSSIGGWKGINESDMVLMPDASTAVLDPFFEDSTLIIR 89 (469)
T ss_pred CCCCEEEEEEECCCC-CEeEEEEEHHHhhHHHhc--CCceeccccccccCcCCCCCEEEEEcCCccEECCcCCCCcEEEE
Confidence 479999999999999 99999999987753 233 2567888877 665567999999999 7999999654599999
Q ss_pred EEEecCC-CCcCCCCHHHHHHHHHHhhhhcCC--cceEeeeeeEEEeccCCC--CC-----------CCCCC--------
Q 018434 92 CDAYTPA-GEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDVK--WP-----------LGWPI-------- 147 (356)
Q Consensus 92 ~d~~~~~-G~p~~~~PR~~Lkr~l~~~~~~G~--~~~~g~E~EF~l~~~~~~--~~-----------~~~~~-------- 147 (356)
||+++.+ |+|++.|||++|||++++++++|+ ++++|+|+|||||+++.. .+ ..|..
T Consensus 90 ~d~~~~~~g~p~~~~PR~iLkr~~~~l~~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (469)
T PRK09469 90 CDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAAWNSGTKYEGGN 169 (469)
T ss_pred EEEEECCCCCcCCcCHHHHHHHHHHHHHHcCCCcceeEecceEEEEEeccccccCccccccccccchhcccccccccCCC
Confidence 9999985 899999999999999999999999 999999999999985330 00 00000
Q ss_pred -CCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcC-CCcEEEEcCCChhhHHHHHHHHHHHHHHHHH
Q 018434 148 -GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILERIT 225 (356)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA 225 (356)
+..+.+.+.||.....+. .++++++|+++|+++||+|+++|||+| ||||||++.|.++|+|||++++||++||+||
T Consensus 170 ~~~~~~~~~~~y~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va 247 (469)
T PRK09469 170 KGHRPGVKGGYFPVPPVDS--SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVA 247 (469)
T ss_pred CCCccCCCccccCCCcccc--hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 012333444555554443 479999999999999999999999999 5999999999999999999999999999999
Q ss_pred HHcCceEEecccccCCCCCCceeeecccCcccC-C------CCchH-HHHHHHHHHHHHHHHhcccccc---cccccCCC
Q 018434 226 EIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMR-N------DGGFE-VIKKAIEKLGLRHSEHIAAYGE---GNERRLTG 294 (356)
Q Consensus 226 ~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~-~------~~~~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~ 294 (356)
++||++|||||||+. +.+|||||+|+|||+.. + ..+++ ..++||||| |+|++++++|++ ||||||+|
T Consensus 248 ~~~g~~atFmpKP~~-~~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p 325 (469)
T PRK09469 248 HAFGKTATFMPKPMF-GDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGI-IKHAKAINALANPTTNSYKRLVP 325 (469)
T ss_pred HHhCCEEEEeccccC-CCCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHH-HHHHHHHHhhhcCCCchHhhcCC
Confidence 999999999999999 58999999999999842 1 12343 459999999 999999999985 99999999
Q ss_pred CCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 295 KHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 295 ~~~a~~~~~~~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
++||| ++++||.+||+++||||.... ...+|||+|++|++|||||++||+|+|||+|
T Consensus 326 ~~~ap--~~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYL~~AaiLaAGldG 382 (469)
T PRK09469 326 GYEAP--VMLAYSARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDG 382 (469)
T ss_pred CCcCc--CcceecCCCCcceEEeccCCC-CCCceEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 99998 999999999999999995322 2347999999999999999999999999999
No 6
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=6.7e-85 Score=653.97 Aligned_cols=321 Identities=20% Similarity=0.252 Sum_probs=272.5
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcc--cCcCCCccEEEEee--eeeecCCCCCCeEEEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTG--QAPGEDSEVILYPQ--AIFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g--~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~v~ 91 (356)
.+|++|+++|+|++| ++|||.+|.+.+.+.+. .+..|+++++. ....+++|++|+|| |++++||.++ +|+|+
T Consensus 8 ~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~~-~a~v~ 83 (435)
T TIGR03105 8 KGIKYFLASFVDLHG-VQKAKLVPAEAIDHMAT--GGAGFAGFAAWGLGQSPADPDLMAIPDLDSLTQLPWQPG-VAWVA 83 (435)
T ss_pred CCCCEEEEEEECCCC-CeeEEEEeHHHHHHHHc--CCCcccchhhhccCCCCCCCCEEEEeccccceeCCCCCC-eEEEE
Confidence 378999999999999 99999999887665433 24567776553 22336899999999 7999999886 99999
Q ss_pred EEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHH
Q 018434 92 CDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDI 171 (356)
Q Consensus 92 ~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (356)
||++. +|+|++.|||++|||++++++++|+++++|+|+|||||+.+.+...... +..+....++|+...... .+++
T Consensus 84 ~d~~~-~G~p~~~~PR~vL~r~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~ 159 (435)
T TIGR03105 84 ADLHV-NGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLSIA-DRADTLAKPCYDQRGLMR--RYDV 159 (435)
T ss_pred EEEee-CCCcCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCCCCcccC-CCCCCCCccCCCCcchhh--hhHH
Confidence 99976 8999999999999999999999999999999999999987543111110 101111223444443332 4799
Q ss_pred HHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeec
Q 018434 172 VDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHAN 251 (356)
Q Consensus 172 ~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H 251 (356)
+++|+++|+++||+|+++|+|+|||||||++.|.++|++||++++||++||+||++||++|||||||+. +.+|||+|+|
T Consensus 160 ~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~-~~~GsG~H~H 238 (435)
T TIGR03105 160 LTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFA-DLTGNGCHFH 238 (435)
T ss_pred HHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCC-CCCccceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred ccCcccCC---------C--CchH-HHHHHHHHHHHHHHHhcccccc---cccccCCCC------CCCCCCCceeeccCC
Q 018434 252 YSTKSMRN---------D--GGFE-VIKKAIEKLGLRHSEHIAAYGE---GNERRLTGK------HETADINTFKWGVAN 310 (356)
Q Consensus 252 ~Sl~~~~~---------~--~~~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~------~~a~~~~~~~WG~~N 310 (356)
+|||+.++ + .+++ ..++||||| |+|++++++|++ ||||||+|+ +||| ++++||.+|
T Consensus 239 ~Sl~d~~g~n~f~d~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP--~~~~WG~~N 315 (435)
T TIGR03105 239 LSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGI-LHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAP--NFISYGGNN 315 (435)
T ss_pred EeeecCCCcccccCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHCCCCccccccCCCcCCcCcccCC--ceeeccCCC
Confidence 99996421 1 1244 449999999 999999999975 999999995 7888 999999999
Q ss_pred CcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 311 RGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 311 Rs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
|+++||||. .+|||+|++|++|||||++||+|+||++|
T Consensus 316 R~a~iRv~~------~~riE~R~~da~aNPYL~lAailaAgl~G 353 (435)
T TIGR03105 316 RTHMVRIPD------PGRFELRLADGAANPYLAQAAILAAGLDG 353 (435)
T ss_pred CceeEeccC------CCeeEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999992 35999999999999999999999999999
No 7
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=4e-71 Score=521.51 Aligned_cols=240 Identities=28% Similarity=0.477 Sum_probs=199.1
Q ss_pred CCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCC-CCCC----CCCCCCccccCcchhhHHHHHHHHHH
Q 018434 103 PTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPI-GGYP----GPQGPYYCGVGADKAWGRDIVDSHYK 177 (356)
Q Consensus 103 ~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (356)
+.|||++|||++++++++|+++++|+|+|||||+++.. .+++. .+.+ ...+++|+....+. .++++++|++
T Consensus 1 ~~~PR~~Lkr~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 76 (259)
T PF00120_consen 1 EACPRSILKRVLERLEEMGLSFKVGFELEFYLFDRDDD--GGWPRPSGYPDEPGQDYGGYYSLSPLDA--GEDFLEEIVD 76 (259)
T ss_dssp -T-HHHHHHHHHHHHHHTCCEEEEEEEEEEEEESTCEE--TTSSSTTSEESESSSTTTBSSTTTTTST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEeEEEEEeccCcc--cccccccccccccccccCCcCCCchhhH--HHHHHHHHHH
Confidence 47999999999999999999999999999999998642 12221 1111 23445555544333 4799999999
Q ss_pred HHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCccc
Q 018434 178 ACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSM 257 (356)
Q Consensus 178 ~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~ 257 (356)
+|+++||+|+++|+|+|||||||++.|.+++++||+++++|++||+||++||++|||||||+. +.+|||+|+|+|||+.
T Consensus 77 ~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~-~~~GsG~H~h~Sl~~~ 155 (259)
T PF00120_consen 77 ALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS-GDNGSGMHLHISLWDA 155 (259)
T ss_dssp HHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST-TSS--BEEEEEEECHH
T ss_pred HHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC-CcCccchhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 5899999999999974
Q ss_pred -CC------C-C--chHH-HHHHHHHHHHHHHHhcccccc---cccccCCCCCCCCCCCceeeccCCCcceeeeccCCCC
Q 018434 258 -RN------D-G--GFEV-IKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINTFKWGVANRGASIRVGRDTEK 323 (356)
Q Consensus 258 -~~------~-~--~~~~-~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~~~~ 323 (356)
++ + + +++. .++||+|| |+|+++|++|++ ||||||++++|+| ++++||.+||+++||||... .
T Consensus 156 ~~g~n~f~~~~~~~~ls~~~~~flaGl-l~h~~~l~a~~~pt~nsykRl~~~~~ap--~~~~wG~~NR~a~iRi~~~~-~ 231 (259)
T PF00120_consen 156 KDGKNLFYDPDGPAGLSELARHFLAGL-LKHAPALTAFTAPTVNSYKRLVPGSWAP--TYISWGYDNRSAAIRIPSGG-G 231 (259)
T ss_dssp HTTEETTBSTTSHGHHHHHHHHHHHHH-HCHHHHHHHCHSTSTTHHHHSSSTSSSS--SBEEEEESHTTSSEEE-HHH-H
T ss_pred cccccccccccccccccHHHHHHHHHH-HHHHHHHHhhhCccCcchhhCCCCccce--eccchhhcccchhhheeccc-c
Confidence 21 2 2 3443 48999999 999999999964 9999999999998 99999999999999999861 1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHHHHh
Q 018434 324 EGKGYFEDRRPASNMDPYVVTSMIAETT 351 (356)
Q Consensus 324 ~~~~riE~R~~da~aNPYLalAailaAg 351 (356)
.+++|||+|++|++|||||++||||+||
T Consensus 232 ~~~~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 232 PKGTRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp HGGSEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred ccccEEeccCCCCCcCHHHHHHHHHhcC
Confidence 2347999999999999999999999998
No 8
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-55 Score=416.45 Aligned_cols=348 Identities=64% Similarity=1.138 Sum_probs=323.2
Q ss_pred HHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeecCCCC
Q 018434 5 SDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRR 84 (356)
Q Consensus 5 ~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~Pw~~ 84 (356)
..|+.+ +.+.+.+.+.|+|+|..|+.+|+|+..++..++.++++|.|+|||++++++.+.++|.+|+|..++..|++.
T Consensus 18 ~~~~~L--~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~g~nSd~~l~Pva~~~dPfr~ 95 (380)
T KOG0683|consen 18 LEYLYL--RAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAPGENSDVYLRPVAIYPDPFRN 95 (380)
T ss_pred hhhccc--cccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccccCCCCceEEeehhhcCCcccC
Confidence 445555 466899999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcc
Q 018434 85 GNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGAD 164 (356)
Q Consensus 85 ~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (356)
+...+|+|+.++.+|.|.+.+-|..+.+++....-..-++++|.|+||.+++.....++|||.+++|.++++||+.+..+
T Consensus 96 g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGad 175 (380)
T KOG0683|consen 96 GNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGAD 175 (380)
T ss_pred CCCEEEEeeccCCCCCcccccchhhHHHHhccccccccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCceeecccc
Confidence 88899999999999999999999999999999887889999999999999999655789999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCC
Q 018434 165 KAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWN 244 (356)
Q Consensus 165 ~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~ 244 (356)
..|.+++++..+++|...||++..++.|+.|||||+.+.|+.++.+||+++..|+++++||+++|+.|||.|||..|+|+
T Consensus 176 ~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~Wn 255 (380)
T KOG0683|consen 176 RVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWN 255 (380)
T ss_pred ccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhccccc----ccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434 245 GAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYG----EGNERRLTGKHETADINTFKWGVANRGASIRVGRD 320 (356)
Q Consensus 245 GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~----~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~ 320 (356)
|+|+|.++|....+.++|.+.+..++.++..+|..++.++- ..+-+||...++++....++||.-||.+.||||..
T Consensus 256 gaG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r~ 335 (380)
T KOG0683|consen 256 GAGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPRT 335 (380)
T ss_pred CcccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCceeeechh
Confidence 99999999998776678888899999999999999999994 36778888767888778899999999999999998
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 321 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
.....++.+|.|.||..+.||+|..+++-..|..
T Consensus 336 va~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~ 369 (380)
T KOG0683|consen 336 VAAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLE 369 (380)
T ss_pred hhcccccccccCCCcCCCCcceeeHHHhhHHHhc
Confidence 8776778999999999999999999999887764
No 9
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=147.51 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=146.2
Q ss_pred cceEeeeeeEEEeccCCC--CC----CCCCCCCCCCCCCC-----CccccCcchhhHHHHHHHHHHHHHHcCceEeeecC
Q 018434 123 EPWYGIEQEYTLLQKDVK--WP----LGWPIGGYPGPQGP-----YYCGVGADKAWGRDIVDSHYKACLYAGINISGING 191 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~--~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~ 191 (356)
-..+|.|+||||++...- .| .|...-+.+.++|+ ||...+.. ...++.++.+.|-++||++..-|.
T Consensus 215 ~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeR---V~~FM~Dve~~LyaLGIpaKTrHN 291 (724)
T COG3968 215 FSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPER---VSAFMKDVEKELYALGIPAKTRHN 291 (724)
T ss_pred ccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccHHH---HHHHHHHHHHHHHHcCCccccccc
Confidence 467999999999987531 00 01100011222232 44444321 356777777788899999999999
Q ss_pred CcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCC-----CC----c
Q 018434 192 EVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRN-----DG----G 262 (356)
Q Consensus 192 E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~-----~~----~ 262 (356)
|++||||||.--+.++--|+|+-.+.-+++|.+|+|||+..-..-|||.| .+|||-|.|+|+-..++ ++ .
T Consensus 292 EVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAG-iNGSGKH~NWSmGtd~g~NLLdPgD~Phd 370 (724)
T COG3968 292 EVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAG-INGSGKHNNWSMGTDDGLNLLDPGDMPHD 370 (724)
T ss_pred ccCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccC-cCCCCCccccccccCCCcccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999996 99999999999964321 11 1
Q ss_pred hHHH----HHHHHHHHHHHHHhcccccc--cccccCCCCCCCCCCCce--------------------------------
Q 018434 263 FEVI----KKAIEKLGLRHSEHIAAYGE--GNERRLTGKHETADINTF-------------------------------- 304 (356)
Q Consensus 263 ~~~~----~~~iaGl~l~h~~al~a~~~--nsYkRl~~~~~a~~~~~~-------------------------------- 304 (356)
...| -.-|-++ -++.+-|-+-.. .+-.||..+ ++|+ .-+
T Consensus 371 N~QFL~Fc~AvIkaV-dkY~~LlRa~~a~AsNDhRLGAN-EAPP-AI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg 447 (724)
T COG3968 371 NKQFLLFCTAVIKAV-DKYADLLRASAANASNDHRLGAN-EAPP-AIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLG 447 (724)
T ss_pred cceeehhhHHHHHHH-HHHHHHHHHHHhccCCccccccC-CCCc-ceeEeeccchHHHHHHHHhcCCCcccccCcccccc
Confidence 1112 2234444 444443322211 234455443 3432 222
Q ss_pred ---------eeccCCCcceeeeccCCCCCCccEEEecCCCCC---CCHHHHHHHHHHHhh
Q 018434 305 ---------KWGVANRGASIRVGRDTEKEGKGYFEDRRPASN---MDPYVVTSMIAETTI 352 (356)
Q Consensus 305 ---------~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~---aNPYLalAailaAgl 352 (356)
.-|..||+.++-.. ..+||+|.++++ +-|-.++-+++|--+
T Consensus 448 ~~vlP~v~kdAgDRNRTSPFAFT-------GNkFEFRavgSSqSvs~P~tVLN~~vAesl 500 (724)
T COG3968 448 ISVLPAVEKDAGDRNRTSPFAFT-------GNKFEFRAVGSSQSVSEPNTVLNVIVAESL 500 (724)
T ss_pred hhhccccccccccccCCCCceec-------cceeeEecCCcccccccchHHHHHHHHHHH
Confidence 24566777666543 258999999876 568899888887543
No 10
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.59 E-value=5.4e-15 Score=116.18 Aligned_cols=78 Identities=26% Similarity=0.417 Sum_probs=64.9
Q ss_pred CEEEEEEEEEcCCCCcceeeEEeCCCC-CCCCCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCC--eEEE
Q 018434 17 DKIIAEYIWIGGSGMDMRSKARTLPGP-VSDPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGN--NILV 90 (356)
Q Consensus 17 ~v~~v~~~~~D~~G~~~Rgk~~~~~~~-~~~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~--~a~v 90 (356)
+|++|+++|+|+.| .+|.++++.+.+ .+.++ .+..||||++ ||..++++|++|+|| |++++||++++ +++|
T Consensus 1 ~V~~v~~~f~D~~G-~~~~~~i~~~~~~~~~~~--~g~~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~v 77 (84)
T PF03951_consen 1 NVKFVDLQFTDLFG-RLKHVTIPASEFDEDALE--DGIGFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTARV 77 (84)
T ss_dssp T-EEEEEEEE-TTS-SEEEEEEEGCCESCSGGG--S-EEEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEEE
T ss_pred CeEEEEEEEEcCCC-CcceEEEEHHHCCchHhh--CCCCCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEEE
Confidence 58999999999999 999999997766 22222 2568999999 999999999999999 89999999865 9999
Q ss_pred EEEEecC
Q 018434 91 MCDAYTP 97 (356)
Q Consensus 91 ~~d~~~~ 97 (356)
+||+|++
T Consensus 78 ~cdv~~P 84 (84)
T PF03951_consen 78 ICDVYDP 84 (84)
T ss_dssp EEEEEST
T ss_pred EEEeECc
Confidence 9999974
No 11
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.83 E-value=1.3e-07 Score=90.85 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=112.2
Q ss_pred eEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCC
Q 018434 125 WYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204 (356)
Q Consensus 125 ~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 204 (356)
.+|+|.||+|.++.+. .+. +... .++++++.. ..+ ..+++|...+|.||+..+
T Consensus 1 t~GvE~E~~lvD~~t~---------~~~---------~~~~---~~~l~~~~~---~~~---~~~~~El~~~qiEi~t~p 53 (287)
T TIGR02050 1 TLGVEEELLLVDPHTY---------DLA---------ASAS---AVLIGACRE---KIG---AGFKHELFESQVELATPV 53 (287)
T ss_pred CceeeeeeeeEcCCcc---------CcC---------ccCh---HHHHHhhhh---hcc---cccChhhhccEEEecCCC
Confidence 3799999999998652 011 0100 144444321 222 348899999999999999
Q ss_pred C-hhhHHHHHHHHHHHHHHHHHHHcCceEEeccc-ccCC------------------------CCCCceeeecccCcccC
Q 018434 205 A-VGISAGDQLWVARYILERITEIAGVVLSFDPK-PIQG------------------------DWNGAGAHANYSTKSMR 258 (356)
Q Consensus 205 ~-~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK-P~~g------------------------~~~GsG~H~H~Sl~~~~ 258 (356)
. +.-++.+.+..++..++++|+++|+...-.-- |+.. +..-+|+|+|+++-+.
T Consensus 54 ~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~- 132 (287)
T TIGR02050 54 CTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSP- 132 (287)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCH-
Confidence 6 78889999999999999999999986543221 2220 0124899999999652
Q ss_pred CCCchHHHHHHHHHHHHHHHHhccccccc------------ccc-----cCCCCCCCCCCCceeec--------------
Q 018434 259 NDGGFEVIKKAIEKLGLRHSEHIAAYGEG------------NER-----RLTGKHETADINTFKWG-------------- 307 (356)
Q Consensus 259 ~~~~~~~~~~~iaGl~l~h~~al~a~~~n------------sYk-----Rl~~~~~a~~~~~~~WG-------------- 307 (356)
..+-..+-.+ ...+|.+.|++.| ||| ++ |.. .+++..-+|.
T Consensus 133 -----~~~i~~~n~l-~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~-p~~-G~p~~f~~~~~y~~~~~~l~~~g~ 204 (287)
T TIGR02050 133 -----DDAVAVLNRL-LPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAW-PTA-GLPPAFGSWDAFEAYFADLLETGV 204 (287)
T ss_pred -----HHHHHHHHHH-HHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhC-CCC-CCCCcCCCHHHHHHHHHHHHHcCC
Confidence 1222222233 5566666666543 333 22 221 1222444553
Q ss_pred cCCCcce---eeeccCCCCCCccEEEecCCCCCCCHH--HHHHHHHHHhh
Q 018434 308 VANRGAS---IRVGRDTEKEGKGYFEDRRPASNMDPY--VVTSMIAETTI 352 (356)
Q Consensus 308 ~~NRs~~---iRvp~~~~~~~~~riE~R~~da~aNPY--LalAailaAgl 352 (356)
..++... ||... .-.+||+|++|+..++= +++||++.|.+
T Consensus 205 i~~~~~iww~vRp~~-----~~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv 249 (287)
T TIGR02050 205 IDDDGDLWWDIRPSP-----HFGTVEVRVADTCLNLEHAVAIAALIRALV 249 (287)
T ss_pred cCCCCeeEEEeccCC-----CCCCeeEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 2233333 55322 23589999999988764 45666665543
No 12
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.60 E-value=6.9e-07 Score=88.83 Aligned_cols=132 Identities=19% Similarity=0.192 Sum_probs=86.4
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEc
Q 018434 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 202 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (356)
.+.+|+|.||++++..+. .+. + . ..++++.+ ... -.-..+..|...+|.||+.
T Consensus 10 ~~tiGvE~E~~lVD~~t~---------~~~---~------~----~~~vl~~~----~~~-~~~~~i~~El~~~qiEi~t 62 (373)
T PRK13517 10 RPTLGVEWELLLVDPETG---------ELS---P------R----AAEVLAAA----GED-DEGPHLQKELLRNTVEVVT 62 (373)
T ss_pred CCeeEeeeeEeeECCCcC---------CcC---c------c----HHHHHHhc----ccc-cCCCcccccccCCEEEECC
Confidence 469999999999997542 000 0 0 23444432 211 1124677899999999999
Q ss_pred CCC-hhhHHHHHHHHHHHHHHHHHHHcCceEE---ecccccCCC----------------------CCCceeeecccCcc
Q 018434 203 GPA-VGISAGDQLWVARYILERITEIAGVVLS---FDPKPIQGD----------------------WNGAGAHANYSTKS 256 (356)
Q Consensus 203 ~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~AT---FmpKP~~g~----------------------~~GsG~H~H~Sl~~ 256 (356)
.|. +.-++.+.+...+..++++|+++|+..- ..|.....+ ..-+|+|+|+++-+
T Consensus 63 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~ 142 (373)
T PRK13517 63 GVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS 142 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC
Confidence 996 7888999999999999999999997544 233311000 13589999999965
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcccccccc
Q 018434 257 MRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGN 288 (356)
Q Consensus 257 ~~~~~~~~~~~~~iaGl~l~h~~al~a~~~ns 288 (356)
. +.+-..+..+ ..++|.+.|++.||
T Consensus 143 ~------~~~i~~~n~l-~~~lP~llALsAnS 167 (373)
T PRK13517 143 R------EKVVPVINRL-RPWLPHLLALSANS 167 (373)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 2 1222233444 66777777776443
No 13
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.54 E-value=1.9e-06 Score=85.63 Aligned_cols=131 Identities=17% Similarity=0.124 Sum_probs=84.6
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEc
Q 018434 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 202 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (356)
.+.+|+|.||++.++.+. .+. .. ..+++.. +... .-..+.+|...+|.||+.
T Consensus 5 ~~t~GvE~E~~lVD~~t~---------~l~---------~~----~~~~l~~----~~~~--~~~~i~~El~~~qiEi~T 56 (371)
T PRK13515 5 EFTLGIEEEYLLVDPETR---------DLR---------SY----PDALVEA----CRDT--LGEQVKPEMHQSQVEVGT 56 (371)
T ss_pred CCcceEeEeEEEecCCcc---------ccc---------cc----HHHHHHh----chhh--cCCccCcchhccEEEECC
Confidence 468999999999998542 000 00 1233432 1111 122688899999999999
Q ss_pred CCC-hhhHHHHHHHHHHHHHHHHHHHcCceEE---ecccccC------------------C----CCCCceeeecccCcc
Q 018434 203 GPA-VGISAGDQLWVARYILERITEIAGVVLS---FDPKPIQ------------------G----DWNGAGAHANYSTKS 256 (356)
Q Consensus 203 ~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~AT---FmpKP~~------------------g----~~~GsG~H~H~Sl~~ 256 (356)
.|. +.-++.+.+...+..+.++|+++|+... ..|.... + ...-+|+|+|+++-+
T Consensus 57 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d 136 (371)
T PRK13515 57 PVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPD 136 (371)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCC
Confidence 996 7777899999999999999999999773 2332100 0 112469999999865
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhcccccccc
Q 018434 257 MRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGN 288 (356)
Q Consensus 257 ~~~~~~~~~~~~~iaGl~l~h~~al~a~~~ns 288 (356)
. ..+...+..+ ...+|.+.|++.||
T Consensus 137 ~------e~~~~~~n~~-~~~lP~llALsanS 161 (371)
T PRK13515 137 R------EDRIDLMNQV-RYFLPHLLALSTSS 161 (371)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 2 2232333344 55666666665544
No 14
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=98.46 E-value=7e-06 Score=81.59 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=60.8
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEc
Q 018434 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 202 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l 202 (356)
.+.+|+|.||+|.++++. .+. +. ..++++.+ ..... -+.+.+|..-+|.||+.
T Consensus 11 ~~t~GvE~E~~LVD~~t~---------~~~---------~~----~~~vl~~~----~~~~~-~~~v~~El~~~qIEi~T 63 (373)
T PRK13516 11 PFTLGVELELQLVNPHDY---------DLT---------QD----SSDLLRAV----KNQPT-AGEIKPEITESMIEIAT 63 (373)
T ss_pred CCeeEEEEEEEeEcCCCc---------CcC---------cc----HHHHHHhc----ccccc-ccccChhhhCceEEEcC
Confidence 459999999999998642 010 01 23444432 11100 12578899999999999
Q ss_pred CCC-hhhHHHHHHHHHHHHHHHHHHHcCceE
Q 018434 203 GPA-VGISAGDQLWVARYILERITEIAGVVL 232 (356)
Q Consensus 203 ~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A 232 (356)
.|. +.-++.+.+...+..++++|+++|+..
T Consensus 64 ~p~~~~~el~~eL~~~r~~l~~~A~~~G~~l 94 (373)
T PRK13516 64 GVCRDIDQALGQLSAMRDVLVQAADKLNIGI 94 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 996 777899999999999999999999864
No 15
>PRK13518 carboxylate-amine ligase; Provisional
Probab=98.24 E-value=3.1e-05 Score=76.37 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=65.3
Q ss_pred eeecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceE--------------EecccccC-------C---
Q 018434 187 SGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVL--------------SFDPKPIQ-------G--- 241 (356)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A--------------TFmpKP~~-------g--- 241 (356)
+.+++|...+|.||+..++ +.-++.+++...|..+.++|+++|+.. ..+|||.- +
T Consensus 49 ~~~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~ 128 (357)
T PRK13518 49 GRLDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQ 128 (357)
T ss_pred CcccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccch
Confidence 4688999999999999996 888899999999999999999999953 34455410 0
Q ss_pred -CCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhccccccc
Q 018434 242 -DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEG 287 (356)
Q Consensus 242 -~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~n 287 (356)
...=.|+|||+.+-+. ...+ ..+-.+ ...+|.|.|+..|
T Consensus 129 ~~~~~~G~HVHVg~~d~-----d~av-~v~n~l-r~~LP~LlALsAn 168 (357)
T PRK13518 129 HRNTTAGLHVHVGVDDA-----DKAV-WIANEL-RWHLPILLALSAN 168 (357)
T ss_pred hcceeeEEEEEeCCCCH-----HHHH-HHHHHH-HhHHHHHHHHHcC
Confidence 0123699999988442 1111 112233 4556777776543
No 16
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=98.07 E-value=9.5e-05 Score=73.61 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=61.5
Q ss_pred eecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCc-e-EE-----eccc-cc---CC--------------
Q 018434 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGV-V-LS-----FDPK-PI---QG-------------- 241 (356)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl-~-AT-----FmpK-P~---~g-------------- 241 (356)
.+..|.-..|.|++..++ +.-++.+++...|..+.++|+++|. . +. |+.- ++ ..
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 455688899999999996 8888999999999999999999997 3 21 2221 11 10
Q ss_pred CCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhccccc
Q 018434 242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYG 285 (356)
Q Consensus 242 ~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~ 285 (356)
...=+|+|||+.+-|. ...-..+..| ..++|.|.|+.
T Consensus 111 ~~~i~G~HVHVgv~d~------d~av~v~n~l-r~~LP~LlALS 147 (376)
T TIGR02048 111 QVVTASVHINIGIPDP------EELMRACRLV-RMEAPLFLALS 147 (376)
T ss_pred hheeeEEEEEcCCCCH------HHHHHHHHHH-HHHHHHHHHHh
Confidence 1123689999999652 2222333444 55666665554
No 17
>PLN02611 glutamate--cysteine ligase
Probab=98.05 E-value=5.2e-05 Score=77.41 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=84.7
Q ss_pred cCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHH--------------HHHHcCce
Q 018434 120 VAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYK--------------ACLYAGIN 185 (356)
Q Consensus 120 ~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------------~l~~~Gi~ 185 (356)
.+-...+|+|+|.++|+.+.. .|. +|. . ...+++.+.. .|..-|
T Consensus 64 ~~~~~~iG~E~E~f~~~~~~~---------~pv---~y~-------~-i~~lL~~l~~~~gw~~~~e~g~iIgl~~~g-- 121 (482)
T PLN02611 64 PKEKWRIGTEHEKFGFELATL---------RPM---KYD-------Q-IAQLLEGLAERFGWEKIMEGDNIIGLKQDG-- 121 (482)
T ss_pred CCCCCeeEEeeeeeeccCCCC---------CCC---CHH-------H-HHHHHHHHHHhcCCceeccCCceecccCCC--
Confidence 345679999999999986542 111 121 1 2344444322 111112
Q ss_pred EeeecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceE--------------Eeccccc----------C
Q 018434 186 ISGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVL--------------SFDPKPI----------Q 240 (356)
Q Consensus 186 ve~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A--------------TFmpKP~----------~ 240 (356)
..+.-|-| ||+|++..+. +.-++++.+...+..++++|+++|+.. ..||||- .
T Consensus 122 -~~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~~~~~i~pk~RY~~M~~y~~~~ 199 (482)
T PLN02611 122 -QSVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKV 199 (482)
T ss_pred -CceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCccccccCCCChHHHHHHHHHHHh
Confidence 24455777 9999999996 788899999999999999999999943 3344432 0
Q ss_pred C----CC--CCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhccccccc
Q 018434 241 G----DW--NGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEG 287 (356)
Q Consensus 241 g----~~--~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~n 287 (356)
| +. .-+|+|||+.+-+. -...+ -+--+ +...|.++|+..|
T Consensus 200 g~~g~~MM~~t~g~QVhvd~~se-----ed~v~-~~~~~-~~l~Pvl~ALfAN 245 (482)
T PLN02611 200 GSLGLDMMFRTCTVQVNLDFSSE-----QDMVR-KFRVG-LALQPIATALFAN 245 (482)
T ss_pred hhhhhhhccceEEEEEEecCCCH-----HHHHH-HHHHH-HHHHHHHHHHHhC
Confidence 0 11 24689999987542 11122 12222 5666777776544
No 18
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=97.45 E-value=0.00045 Score=66.31 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=62.4
Q ss_pred eeecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceEE--------------ecccc-------------
Q 018434 187 SGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVLS--------------FDPKP------------- 238 (356)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~AT--------------FmpKP------------- 238 (356)
..+++|.-.+|.||+..|+ +.-++.+.+...+..+.++|+++|+... ..|||
T Consensus 35 ~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~g 114 (288)
T PF04107_consen 35 GRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRRG 114 (288)
T ss_dssp SEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH-
T ss_pred CceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhhh
Confidence 4778899999999999996 7778999999999999999999998753 22231
Q ss_pred -cCCCCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhccccccc
Q 018434 239 -IQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEG 287 (356)
Q Consensus 239 -~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~n 287 (356)
+..+..-+|+|+|+++-+. ....-..+..+ ...+|.+.|++.|
T Consensus 115 ~~~~~~~~~g~hvhV~v~~~-----~e~~v~~~n~~-~~~~P~llALsAN 158 (288)
T PF04107_consen 115 VLARRMMTCGAHVHVGVDDG-----DEAAVRVMNAL-RPWLPVLLALSAN 158 (288)
T ss_dssp SGCCSHHBHEEEEEEEESSS-----HHHHHHHHHHH-HTTHHHHHHHH--
T ss_pred hhhhhhhhcccceEEeCCCc-----cHHHHHHHHHH-HHHhHHHHHHHcC
Confidence 1111234599999999652 11111233334 5677777776543
No 19
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=97.43 E-value=0.0032 Score=64.08 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCce--------------E
Q 018434 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGIN--------------I 186 (356)
Q Consensus 121 G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~--------------v 186 (356)
+-..++|+|+|-+.|+.++.. |. +|+ .. .. ...+++.+. ...|++ =
T Consensus 19 ~~~~~iG~E~E~f~~~~~~~~---------~~---~y~-~~---~g-i~~~l~~l~---~~~g~~~~~e~g~~i~l~~~~ 78 (446)
T TIGR01436 19 KEQWRIGTEHEKFGFEKNTLR---------PM---KYE-QK---GG-IAELLNGIA---ERFGWQKVMEGDKIIGLKQDK 78 (446)
T ss_pred CCCCceEeeeeeeeeecCCCC---------CC---CCC-Cc---hh-HHHHHHHHH---hhcCCceeccCCceeeecCCC
Confidence 446789999999999876531 11 121 11 11 244554432 122211 0
Q ss_pred eeecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceE
Q 018434 187 SGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVL 232 (356)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A 232 (356)
..+.-|-| ||+|++..|. +.-++++.+...+..++++|+++|+..
T Consensus 79 ~~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l 124 (446)
T TIGR01436 79 QSISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGF 124 (446)
T ss_pred CeEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 34455777 9999999996 788899999999999999999999854
No 20
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0026 Score=61.88 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=110.4
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeec--CCcCCCcEEE
Q 018434 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN--GEVMPGQWEF 200 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h--~E~gpGQ~Ei 200 (356)
.+..|+|.|||+.++.+. +.... ...+++. ..=++..-| +|.--.+.|+
T Consensus 2 ~ltlGvE~E~~lvd~~g~------------------dl~~~----s~~ii~~-------~~~~~~~~~~~~e~~e~~vE~ 52 (369)
T COG2170 2 RLTLGVELEFQLVDPQGY------------------DLVGS----SDAIIEA-------LKGKVTAGHLKHEITESTVEL 52 (369)
T ss_pred CcccceEEEEEecCCCCc------------------ccccc----cHHHHHh-------cCCCCCCcchhHHHHHHhhcc
Confidence 357899999999987541 11111 1233332 222222333 6666677888
Q ss_pred EcCCChhh-HHHHHHHHHHHHHHHHHHHcCceEE--------------ecccc-c----------CCCCCCceeeecccC
Q 018434 201 QVGPAVGI-SAGDQLWVARYILERITEIAGVVLS--------------FDPKP-I----------QGDWNGAGAHANYST 254 (356)
Q Consensus 201 ~l~~~~~l-~aaD~~~~~k~~ik~vA~~~Gl~AT--------------FmpKP-~----------~g~~~GsG~H~H~Sl 254 (356)
...+++.+ +|+=.+--.|..+++.|..||+... =-+|| + .....=-|.|||+.+
T Consensus 53 ~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~v~G~HVHVGi 132 (369)
T COG2170 53 ATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMTVAGQHVHVGI 132 (369)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhheeeeeEEEEecC
Confidence 88887554 4666677789999999999999753 22334 0 000112488999988
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHhccccccc------------ccccCC----CCCCCCCCCceeec-----------
Q 018434 255 KSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEG------------NERRLT----GKHETADINTFKWG----------- 307 (356)
Q Consensus 255 ~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~n------------sYkRl~----~~~~a~~~~~~~WG----------- 307 (356)
-+. ...-..+-++ +.++|.+.|+.++ |+|+.. |. ..++|..-+|+
T Consensus 133 ~~~------d~~~~~l~~l-~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~-~g~pp~f~sw~~f~~~~~~~~~ 204 (369)
T COG2170 133 PSP------DDAMYLLHRL-LRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPT-NGLPPAFQSWAAFEAFFRDQLE 204 (369)
T ss_pred CCH------HHHHHHHHHH-HhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCc-CCCCccccCHHHHHHHHHHHHH
Confidence 552 1223455677 8999998888642 455432 21 11222444565
Q ss_pred ---cCCCc---ceeeeccCCCCCCccEEEecCCCCCCCHHH--HHHHHHHHhh
Q 018434 308 ---VANRG---ASIRVGRDTEKEGKGYFEDRRPASNMDPYV--VTSMIAETTI 352 (356)
Q Consensus 308 ---~~NRs---~~iRvp~~~~~~~~~riE~R~~da~aNPYL--alAailaAgl 352 (356)
++|.. -.|| |+ +.=+++|+|++|...||=- ++++++-|-+
T Consensus 205 tG~I~~~~~lwwdIR-Ps----ph~gTlEvRi~D~~~~l~~~~aivaL~~Alv 252 (369)
T COG2170 205 TGTIDSMGDLWWDIR-PS----PHLGTLEVRICDTVLNLAELLAIVALIHALV 252 (369)
T ss_pred hcccccccceEEecc-cC----CCCCceEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 23322 2455 21 1125899999999999964 4666665543
No 21
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=96.63 E-value=0.009 Score=59.52 Aligned_cols=44 Identities=27% Similarity=0.150 Sum_probs=37.9
Q ss_pred eecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceE
Q 018434 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVL 232 (356)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A 232 (356)
.+.-|-| ||+|++..|. +.-++++.+...+..++++|+++|+..
T Consensus 63 ~iTlEPG-gQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~l 107 (390)
T TIGR03444 63 RITVEPG-GQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLAL 107 (390)
T ss_pred eEEeCCC-CEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 3444654 9999999996 888899999999999999999999954
No 22
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=92.38 E-value=0.046 Score=53.43 Aligned_cols=58 Identities=10% Similarity=-0.098 Sum_probs=47.1
Q ss_pred cccccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 287 GNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 287 nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
++++|.....|. .+||.+|+..+.+ +.. .+...++...-|++|||+.++.+.|++.+|
T Consensus 285 s~rh~~hi~~yd-----p~~G~dN~rrltg-~hE----t~~i~~Fs~GvAnr~~siri~r~va~~~~G 342 (380)
T KOG0683|consen 285 SKRHREHIAAYD-----PKGGKDNERRLTG-RHE----TGSIDNFSWGVANRNPSIRIPRTVAAEGKG 342 (380)
T ss_pred chhhhhhhhhcC-----ccCCccchhhhcC-CCc----cccccccccccccCCceeeechhhhccccc
Confidence 789998876543 5799999998888 322 235677778888899999999999999999
No 23
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=89.27 E-value=2 Score=34.45 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCce
Q 018434 106 KRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGIN 185 (356)
Q Consensus 106 PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ 185 (356)
|...-+++++.|++.|..+..-.++||++.-++. +-++.+...+.+.|..
T Consensus 2 ~~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~~~------------------------------~~~~~f~~~~~~~g~~ 51 (104)
T PF06877_consen 2 QIIENREVLEALEEDGDDLSKPRPIEHWFYFEDE------------------------------EDAEKFAEELEKLGYE 51 (104)
T ss_dssp HHHHHHHHHHHHHHHT--TTS-EEEEEEEEES-H------------------------------HHHHHHHHHHHHHS--
T ss_pred cHHHHHHHHHHHHhcCCCCCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCE
Confidence 3445678888899999999999999998885432 1123334457889999
Q ss_pred EeeecC--CcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCce
Q 018434 186 ISGING--EVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVV 231 (356)
Q Consensus 186 ve~~h~--E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ 231 (356)
|+.... |.+.+.|.+.+.....+...+ +...-.-+-++|+++|..
T Consensus 52 v~~~~~~~~d~~~~~~~~~~~~~~~~~~~-I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 52 VESAEEDEEDGDGPYCLDISREMVLDYED-INAITQELEDLAKEFGGE 98 (104)
T ss_dssp -B----B-SS-SSBEEEEEEEEE-S-HHH-HHHHHHHHHHHHHHHT-E
T ss_pred EEEeecccCCCCceEEEEEEEecCCCHHH-HHHHHHHHHHHHHHhCcE
Confidence 988775 678899999998877665543 444455666788887754
No 24
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=87.80 E-value=1.2 Score=33.61 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCC------CcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecc
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMP------GQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDP 236 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gp------GQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp 236 (356)
-++.+|.+.|.+.|++|..+..+.-+ ++|.+.+.-.-+ ...| .-.++.-++++|++.|+..+|-|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~~-~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGTD-LDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCCC-HHHHHHHHHHHHHHhcceEEecC
Confidence 45677778889999999999776654 778655544322 1122 55788999999999999988754
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=85.26 E-value=2.6 Score=31.83 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEe
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSF 234 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATF 234 (356)
-++.++.+.|.+.|.+++.++.-.-.|+|-+.+.-.-+ .|+.-.++..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 46778888899999999999999889999888776544 567788999999999999999876
No 26
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=80.33 E-value=4 Score=44.57 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.9
Q ss_pred cceEeeeeeEEEeccCC
Q 018434 123 EPWYGIEQEYTLLQKDV 139 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~ 139 (356)
...+|+|-|+.+++.+.
T Consensus 18 ~~~~GiE~E~lrVd~~g 34 (752)
T PRK02471 18 QANFGLEKESLRVDSDG 34 (752)
T ss_pred cCCcceEeeeeEECCCC
Confidence 66899999999999864
No 27
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=78.93 E-value=9.3 Score=35.95 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL 273 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl 273 (356)
-|.+.-|+|.|.++..-+| ++.+=..+|++..+.|+.+ .|| -+.|.|+|+.+-|....+-.....|-++||-.
T Consensus 113 ~PD~lvfDLDP~~~~~f~~-v~~~A~~~r~~L~~lgL~~--f~K----TSG~kGlHV~vPl~~~~~~~~~r~fa~~iA~~ 185 (245)
T TIGR02778 113 KPDRIVFDLDPGPGVAWKL-VVEAAQLIRELLDELGLES--FVK----TSGGKGLHVYVPLRPTLSWDEVKDFAKALAQA 185 (245)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceE----ccCCCeEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999998876555 5566677999999999975 355 24578999999996521101122233444444
Q ss_pred HHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 274 GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 274 ~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
+.+..|.+.... -.|....+ -.++.|..|+|...+=-|-
T Consensus 186 l~~~~Pd~~t~~--~~k~~R~g-----kvfiDylqN~~g~T~vapY 224 (245)
T TIGR02778 186 LAQQMPDRFTAE--MSKKNRVG-----KIFVDYLRNARGKTTVAPY 224 (245)
T ss_pred HHHHCchhhhhH--hhHHhCCC-----CEEEECccCCCCCeEEecc
Confidence 233334443322 22222122 2788898888887776664
No 28
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=78.32 E-value=10 Score=35.28 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL 273 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl 273 (356)
-|.+.-|+|.|.+++.-.| ++.+=..+|++..+.|+.+ .||- +.|.|+|+.+-|....+-.....|-+++|-.
T Consensus 97 ~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~~--f~KT----SG~kGlHV~vPl~~~~~~~~~r~fa~~iA~~ 169 (227)
T cd04861 97 RPDRLVFDLDPGPGVPFED-VVEAALLLRELLDELGLES--FPKT----SGGKGLHVYVPLAPRYTWDEVRAFAKALARE 169 (227)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceEc----cCCCeEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4899999999998876555 5666688999999999975 3552 4578999999996521101122334445444
Q ss_pred HHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434 274 GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 320 (356)
Q Consensus 274 ~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~ 320 (356)
+.+..|.+......--+|- + -.++.|..|+|...+=-|-+
T Consensus 170 l~~~~P~~~t~~~~k~~R~--g-----rvfiDy~qN~~g~T~vapYS 209 (227)
T cd04861 170 LARRLPDLFTAEMAKAKRG--G-----KIFVDYLQNARGKTTVAPYS 209 (227)
T ss_pred HHHHCchhhhhHhhHHhCC--C-----CEEEECccCCCCCeEEeccc
Confidence 2333344433321111232 1 26888888888877765543
No 29
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.84 E-value=3.8 Score=31.75 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEeccc
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK 237 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK 237 (356)
-++.++.+.|.+.|++|..++...-.|+|.+.+.-.-+ ...++.-.++..+++++.+.|+..++-+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 46777778889999999999998888888776655422 11345678899999999999999998654
No 30
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.70 E-value=5.6 Score=29.78 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecc
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDP 236 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp 236 (356)
-++.++.+.|.+.|++|+.++.-.-.|+|-+.+.-.-+ ...+.-.++..+..++++.|+.++.-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 46777888899999999999877777887776544322 111356789999999999999988643
No 31
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=76.67 E-value=12 Score=34.80 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL 273 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl 273 (356)
-|.+.-|+|.|.+++.-.| ++.+=..+|++..+.|+.+ .|| -+.|.|+|+.+-|....+-+....|-++||-.
T Consensus 97 ~PD~lvfDLDP~~~~~f~~-v~~~A~~~r~~L~~lgL~~--~~K----TSG~kGlHV~vPl~~~~~~~~~r~fa~~lA~~ 169 (227)
T cd04862 97 RPDRIVFDLDPGPGVPWKA-VVEAALLVRELLDELGLES--FVK----TSGGKGLHVVVPLAPRAGWDEVKAFAKALAQH 169 (227)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceE----ccCCCeEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999998876555 5566688999999999985 355 24578999999996521101122333444443
Q ss_pred HHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434 274 GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 320 (356)
Q Consensus 274 ~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~ 320 (356)
+.+..|.+.... -.|....+ -.++.|..|+|...+=-|-+
T Consensus 170 l~~~~P~~~t~~--~~k~~R~g-----kvfiDylqN~~g~T~vapYS 209 (227)
T cd04862 170 LARTNPDRFVAT--MGKAKRVG-----KIFIDYLRNGRGATAVAPYS 209 (227)
T ss_pred HHHHCchhhhHH--hhHHhCCC-----cEEEECccCCCCCeEEeccc
Confidence 233334433322 22222222 27888988888877766643
No 32
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=76.53 E-value=4.1 Score=40.70 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=35.3
Q ss_pred ecCCcCCCcEEEEcCCChhhH-HHHHHHHHHHHHHHHHHHcCceEEe
Q 018434 189 INGEVMPGQWEFQVGPAVGIS-AGDQLWVARYILERITEIAGVVLSF 234 (356)
Q Consensus 189 ~h~E~gpGQ~Ei~l~~~~~l~-aaD~~~~~k~~ik~vA~~~Gl~ATF 234 (356)
+.-|.| ||||+...|.+.+. ++-..-.--.+||++|...|+...+
T Consensus 91 IslEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG 136 (456)
T COG3572 91 ISLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG 136 (456)
T ss_pred EEeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 344777 99999999986655 5666666678999999999987764
No 33
>PRK00194 hypothetical protein; Validated
Probab=75.31 E-value=5.1 Score=31.00 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecc
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDP 236 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp 236 (356)
-++.++.+.|.+.|++|..++.....|.|.+.+.-.-+ ...++.-.++..+++++.+.|+..+|-+
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 80 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQH 80 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence 46777788899999999999999888888874332211 1123356778899999999999999843
No 34
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=74.93 E-value=14 Score=34.22 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL 273 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl 273 (356)
-|.+.-|+|.|.+++.-.| ++-+=..+|++..+.|+.+ .|| .+.|.|+|+.+-|.+.. ......+.|...|
T Consensus 92 ~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~~--f~K----TSG~kGlHV~vPl~~~~--~~~~~~r~fa~~i 162 (223)
T cd04866 92 KPSEIVFDLDPPSRDHFSL-AVEAANLLKEILDALGLTS--FVK----TSGNKGLQVYIPLPDNK--FTYDETRLFTEFI 162 (223)
T ss_pred CCCeEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceE----ccCCCeEEEEEEcCCCC--CCHHHHHHHHHHH
Confidence 5999999999998875554 5666788999999999985 355 24578999999997311 1233344444444
Q ss_pred ---HHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccC
Q 018434 274 ---GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 320 (356)
Q Consensus 274 ---~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~ 320 (356)
+.+..|.+... +-.|....+ -.++.|..|+|...+=-|-+
T Consensus 163 A~~l~~~~P~~~t~--~~~k~~R~g-----kVfiDylqN~~g~T~vapYS 205 (223)
T cd04866 163 AEYLCQQFPELFTT--ERLKKNRHN-----RLYLDYVQHAEGKTIIAPYS 205 (223)
T ss_pred HHHHHHHCchhhhH--HhhHHhCCC-----CEEEECccCCCCCeEEeccc
Confidence 22233433322 222222222 27888988888887766643
No 35
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=73.19 E-value=3.3 Score=40.68 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHcCceEEeccc
Q 018434 211 GDQLWVARYILERITEIAGVVLSFDPK 237 (356)
Q Consensus 211 aD~~~~~k~~ik~vA~~~Gl~ATFmpK 237 (356)
+|.++.+|+-+|++|...|+..||||-
T Consensus 276 ~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 276 CDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred hHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 599999999999999999999999996
No 36
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=71.96 E-value=20 Score=33.53 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHH---HH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKK---AI 270 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~---~i 270 (356)
-|-+.-|+|.|.+++.-.| ++.+=..+|++..+.|+.+ .|| -+.|.|+|+.+-|.... .....+. ++
T Consensus 101 ~PD~~vfDLDP~~~~~f~~-v~~~A~~~r~~L~~lgL~s--~~K----TSG~kGlHV~vPl~~~~---~~~~vr~fa~~~ 170 (231)
T cd04863 101 PPDRLVFDLDPGEPAGLVE-CARVALWLRDRLAALGLAS--FPK----TSGSKGLHLYVPLDGPV---SSDQTKEFAKAL 170 (231)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceE----CCCCCeEEEEEEcCCCC---CHHHHHHHHHHH
Confidence 4999999999998876555 5555577999999999975 355 24578999999996521 1233344 44
Q ss_pred HHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 271 EKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 271 aGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
|-.+.+..|.+... +..|.-..+ -.++.|-.|+|...+=-|-
T Consensus 171 A~~l~~~~P~~~t~--~~~k~~R~g-----rvfiDylqN~~g~T~vapY 212 (231)
T cd04863 171 ARELEREHPDLVVS--RMTKSLRAG-----KVFVDWSQNDAAKTTIAPY 212 (231)
T ss_pred HHHHHHHCchhhhh--HhhHhhCCC-----cEEEECccCCCCCeEEecc
Confidence 44323333444332 222211122 1688888888887766554
No 37
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=71.88 E-value=50 Score=30.43 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHH
Q 018434 327 GYFEDRRPASNMDPYVVTSMIA 348 (356)
Q Consensus 327 ~riE~R~~da~aNPYLalAail 348 (356)
.-||+|.+.++-++--+.+.+-
T Consensus 225 ~TvEFR~~~~s~d~~~~~~wi~ 246 (252)
T PF12224_consen 225 PTVEFRQPNGSLDAEEISAWIE 246 (252)
T ss_pred CeEEEecCCCCCCHHHHHHHHH
Confidence 3799999999999988766554
No 38
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=71.39 E-value=20 Score=33.42 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL 273 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl 273 (356)
-|.+.-|+|.|.+++.-.| ++.+=..+|++..+.|+.+ .|| -+.|.|+|+.+-|....+-+....|-++||-.
T Consensus 98 ~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~s--f~K----TSG~kGlHv~vPl~~~~~~~~~r~fa~~iA~~ 170 (228)
T cd04865 98 HPDELVIDLDPQPGTSFED-VVEVALLVREVLDELGLRG--YPK----TSGARGLHIYVPIAPRYTFEEVRRFAELLARE 170 (228)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceE----ccCCCeEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4899999999998876555 5666688999999999985 355 24578999999996521101122334445444
Q ss_pred HHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 274 GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 274 ~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
+.+..|.+.... -.|.-..+ -.++.|..|+|...+=-|-
T Consensus 171 l~~~~P~~~t~~--~~k~~R~g-----rvfiDylqN~~g~T~vapY 209 (228)
T cd04865 171 VERRLPDLATTE--RWKKERGG-----RVYLDYLQNARGKTLAAPY 209 (228)
T ss_pred HHHHCchhhhhH--hhHHhCCC-----CEEEECccCCCCCeEEecc
Confidence 233334443322 22222122 2788888888887766554
No 39
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=71.15 E-value=20 Score=33.43 Aligned_cols=111 Identities=10% Similarity=0.066 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL 273 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl 273 (356)
-|-+.-|+|.|. +. .=++++.+=..+|++..+.|+.+ .||- +.|.|+|+.+-|....+-.....|-+++|-.
T Consensus 99 ~PD~~vfDLDP~-~~-~f~~v~~~A~~~r~~L~~~gL~~--f~KT----SG~kGlHv~vPl~~~~~~~~~r~fa~~lA~~ 170 (228)
T cd04864 99 HPDLMVFDLDPS-AD-DIEAVRTAALAVRELLDELGLPS--FVKT----TGSRGFHVVVPLDGRGDFDDVRAFAAEAADA 170 (228)
T ss_pred CCCEEEEecCCC-CC-CHHHHHHHHHHHHHHHHHcCCcc--ceEc----cCCCeEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 489999999998 44 44557777788999999999985 4562 4578999999996521101122334445444
Q ss_pred HHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 274 GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 274 ~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
+.+..|.+... .-.|....+ -.++.|..|+|...+=-|-
T Consensus 171 l~~~~P~~~t~--~~~k~~R~g-----rvfiDylqN~~g~T~vapY 209 (228)
T cd04864 171 LAKRDPDLLTT--EARKAKRGD-----RVFLDIGRNAYGQTAVAPY 209 (228)
T ss_pred HHHHCchhhhH--HhhHHhCCC-----cEEEECccCCCCCeEEecc
Confidence 23333444332 222222222 2788888888887776664
No 40
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=70.28 E-value=13 Score=28.10 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEec
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFD 235 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFm 235 (356)
-++.++.+.|.+.|.+|..+..-.-.|+|-+.+...-. .+..-.++..++++|++.|+.++-+
T Consensus 13 GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 13 GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 56778888899999999998888888888776665532 1356678899999999999988753
No 41
>PRK11191 RNase E inhibitor protein; Provisional
Probab=66.00 E-value=53 Score=28.17 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=60.5
Q ss_pred HHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEee
Q 018434 109 AAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISG 188 (356)
Q Consensus 109 ~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~ 188 (356)
.=+++++.|.+.|-.+..-.++|+++.-.+. +-++.+...+.++|..|..
T Consensus 13 ~~~eVi~~L~edGsd~~~~~~IEH~~~f~d~------------------------------~~lek~a~~a~klGyeV~~ 62 (138)
T PRK11191 13 ETREIIEELLEDGSDPDALYTIEHHFSADDF------------------------------DKLEKAAVEAFKLGYEVTD 62 (138)
T ss_pred HHHHHHHHHHHcCCCcCCCEEEEEEEecCCH------------------------------HHHHHHHHHHHHcCCeeec
Confidence 3466777788889888888888888764322 1123333356789999943
Q ss_pred ---ecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCce
Q 018434 189 ---INGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVV 231 (356)
Q Consensus 189 ---~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ 231 (356)
+..|.+..-|-+.+.....+.+.+ +...-.-+-++|+++|..
T Consensus 63 ~ee~e~edg~~~~~~~~~~e~~l~~e~-I~~~~~~L~~LA~k~~g~ 107 (138)
T PRK11191 63 AEELELEDGDVIFCCDAVSEVALNAEL-IDAQVEQLLALAEKFDVE 107 (138)
T ss_pred ccccccCCCCeEEEEEEEecCCCCHHH-HHHHHHHHHHHHHHhCCC
Confidence 234566667777877777777655 334445566788888864
No 42
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=58.68 E-value=11 Score=29.49 Aligned_cols=59 Identities=5% Similarity=-0.052 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceE
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVL 232 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~A 232 (356)
.+.+....+.+.+.|++++-+..|+--..--+.+-|. ||.-+-||.++|++++.++..+
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RI 83 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRI 83 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceE
Confidence 5667777777888999999999999888888888887 8888999999999999998765
No 43
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.71 E-value=28 Score=25.68 Aligned_cols=60 Identities=12% Similarity=-0.083 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCceEeeecCC--cCCCcEEEEcCCChhhHHH-HHHHHHHHHHHHHHHHcCce
Q 018434 170 DIVDSHYKACLYAGINISGINGE--VMPGQWEFQVGPAVGISAG-DQLWVARYILERITEIAGVV 231 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E--~gpGQ~Ei~l~~~~~l~aa-D~~~~~k~~ik~vA~~~Gl~ 231 (356)
-++.++.+.|.+.|+++..++.- ...++|.+.+.-.-+ .. .+.-.++..++.+|.+.++.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 46778888899999999999776 466677665554322 11 13567888889999887763
No 44
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=53.18 E-value=8.1 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.5
Q ss_pred HHcCceEeeecCCcCCCcEEEEcCC
Q 018434 180 LYAGINISGINGEVMPGQWEFQVGP 204 (356)
Q Consensus 180 ~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 204 (356)
-++|-++|++.-+ +|||||||+.-
T Consensus 55 ~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 55 GAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred hcccCcceEEEEe-cCceEEEehhh
Confidence 4578788888876 69999999864
No 45
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=53.16 E-value=42 Score=24.86 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCceEeeecCCcCCCcEEEEcCC--ChhhHHHHHHHHHHHHHHHHHHHcCc
Q 018434 173 DSHYKACLYAGINISGINGEVMPGQWEFQVGP--AVGISAGDQLWVARYILERITEIAGV 230 (356)
Q Consensus 173 ~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~--~~~l~aaD~~~~~k~~ik~vA~~~Gl 230 (356)
+++.+.|+.+|+.++.. ....+++...+ .|....+| ++-+||+-+||
T Consensus 22 ~~i~~~L~~lg~~~~~~----~~~~~~v~vP~~R~Di~~~~D-------liEEiaR~yGY 70 (70)
T PF03484_consen 22 EEIIKILKRLGFKVEKI----DGDTLEVTVPSYRFDIEHEED-------LIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHHTT-EEEE-----CTTEEEEEEETTSTT-SSHHH-------HHHHHHHHHTG
T ss_pred HHHHHHHHHCCCEEEEC----CCCEEEEEcCCCcCCcCcccH-------HHHHHHHHhCC
Confidence 55666789999999875 66788888877 47777766 67888888886
No 46
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=52.86 E-value=31 Score=25.29 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCceEeeecCCcCCCcEEEEcCCC--hhhHHHHHHHHHHHHHHHHHHHcCc
Q 018434 173 DSHYKACLYAGINISGINGEVMPGQWEFQVGPA--VGISAGDQLWVARYILERITEIAGV 230 (356)
Q Consensus 173 ~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~--~~l~aaD~~~~~k~~ik~vA~~~Gl 230 (356)
+++.+.|..+|++++. .+ ..+++++...+- |.+..+| ++.+||+-+|+
T Consensus 22 ~ei~~~L~~lg~~~~~--~~-~~~~~~v~~P~~R~Di~~~~D-------liEei~r~~Gy 71 (71)
T smart00874 22 EEIEEILKRLGFEVEV--SG-DDDTLEVTVPSYRFDILIEAD-------LIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHHCCCeEEe--cC-CCCeEEEECCCCccccCcccH-------HHHHHHHHhCC
Confidence 3456678899999965 11 145688877763 5555544 78899998886
No 47
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.67 E-value=53 Score=22.90 Aligned_cols=50 Identities=18% Similarity=0.045 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCceEeeecCCcC--CCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceE
Q 018434 172 VDSHYKACLYAGINISGINGEVM--PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVL 232 (356)
Q Consensus 172 ~~~i~~~l~~~Gi~ve~~h~E~g--pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~A 232 (356)
+.++...+.+.|++|.++++... .|.-.+.+.-.+ ...+++..+++|+.+
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~v 64 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCceE
Confidence 44555667889999976653222 344445444443 234555666677653
No 48
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=43.25 E-value=1.1e+02 Score=32.42 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHH---H
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKA---I 270 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~---i 270 (356)
-|.+.-|+|.|.+.+.-.| ++.+=..+|++..+.|+.+ .||- +.|.|+|+.+-|.... -.....+.| |
T Consensus 390 ~Pd~~v~DLDP~~~~~f~~-v~~~A~~~r~~L~~~gl~~--~~Kt----SG~kGlhv~vPl~~~~--~~~~~~~~fa~~~ 460 (552)
T TIGR02776 390 KPDRIVFDLDPPPGVAFKL-AVEAAQLMKQLLDELGLVS--FVKT----SGGKGLHVVVPLRPNT--FTWDETKLFAKAI 460 (552)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceEc----cCCCeEEEEEEcCCCC--CCHHHHHHHHHHH
Confidence 5899999999998765544 5555677999999999975 4562 4578999999996511 122333444 4
Q ss_pred HHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeec
Q 018434 271 EKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVG 318 (356)
Q Consensus 271 aGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp 318 (356)
|-.+.+..|.+.... -.|.-..+ -.++.|..|+|...+=-|
T Consensus 461 a~~~~~~~P~~~t~~--~~k~~R~g-----rv~iDy~qn~~~~T~~ap 501 (552)
T TIGR02776 461 AEYLARQFPERFTTE--MGKKNRVG-----RIFIDYLRNARGKTTVAP 501 (552)
T ss_pred HHHHHHHCcceehhh--hhHhhCCC-----CEEEEcccCCCCCeEEec
Confidence 433223334433322 11211121 167777777777655555
No 49
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=41.55 E-value=71 Score=28.83 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCCC------cEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccc
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMPG------QWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKP 238 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpG------Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP 238 (356)
--|+.++.+.|.+.||+|+.+.++..+. .|.+.+.-.-|- .-++-.++..+.++|.+.++.+++-|.=
T Consensus 106 PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~--~~~~~~L~~~l~~l~~eL~vd~~l~~~~ 179 (190)
T PRK11589 106 PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA--SQDAANIEQAFKALCTELNAQGSINVVN 179 (190)
T ss_pred CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC--CCCHHHHHHHHHHHHHHhCceEEEEEee
Confidence 3578888899999999999999986654 444443322110 0124467888999999999999988763
No 50
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=40.59 E-value=2.5e+02 Score=29.53 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCCCcEEEE--------------cCCChhhHHHHHHHHHHHHH-------------
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQ--------------VGPAVGISAGDQLWVARYIL------------- 221 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~--------------l~~~~~l~aaD~~~~~k~~i------------- 221 (356)
....+.|.+.+.+.||++..+..|.+ -|.+. +....++..|++=...|+++
T Consensus 241 ~~y~~~Ii~~a~~~Gi~~~~~~se~~--~~~L~~g~~~~~~~~s~~~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~ 318 (547)
T TIGR03103 241 NPYARIIVDEARRRGIEVEVLDAEGG--LFRLSLGGRSIRCRESLSELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLA 318 (547)
T ss_pred CHHHHHHHHHHHHcCCcEEEECCCCC--EEEecCCceEEEEEeccCCCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEE
Confidence 34566677789999999999887853 23222 12235666665555555443
Q ss_pred ------HHHHHHcCceEEecccccCCCCCCceeeec
Q 018434 222 ------ERITEIAGVVLSFDPKPIQGDWNGAGAHAN 251 (356)
Q Consensus 222 ------k~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H 251 (356)
++.++++|. ++=||..| ..|.|..+.
T Consensus 319 ~~~~~~~~~~~~~G~---vVVKP~~G-~~G~Gv~v~ 350 (547)
T TIGR03103 319 GNGEAVEAFLAEHGA---VVVKPVRG-EQGKGISVD 350 (547)
T ss_pred CCHHHHHHHHHHhCC---EEEEECCC-CCCcCeEEe
Confidence 345677784 68899885 677787764
No 51
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.55 E-value=46 Score=31.96 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCceEeeecCC--cCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecc
Q 018434 170 DIVDSHYKACLYAGINISGINGE--VMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDP 236 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E--~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp 236 (356)
-|+.++.+.|.+.|++|+.+... .+.++|.+.+.-.-+ +..+.-.+|+.+.++|++.|+.++.-+
T Consensus 19 GIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~~ 85 (286)
T PRK13011 19 GIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELHD 85 (286)
T ss_pred CHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEee
Confidence 57888888999999999999885 678899886554312 112367889999999999999887663
No 52
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed
Probab=39.67 E-value=1.1e+02 Score=32.86 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCccc-CCCCchHHHHHHHHH
Q 018434 194 MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSM-RNDGGFEVIKKAIEK 272 (356)
Q Consensus 194 gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~-~~~~~~~~~~~~iaG 272 (356)
-|.+.-|+|.|.+++.-.| ++.+=..+|++..+.|+.. .|| -+.|.|+|+.+-|... .+-.....|-+++|-
T Consensus 431 ~pd~~v~DLDP~~~~~~~~-v~~~A~~~r~~L~~~gl~~--~~k----tSG~kGlhv~vPl~~~~~~~~~~~~fa~~~a~ 503 (610)
T PRK09633 431 RPTEIVFDLDPPSRDEFPL-AVEAALELKRLFDQFGLTS--FVK----TSGNKGLQLYIPLSKNAFTYEETRLFTEFIAE 503 (610)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCcc--ceE----ccCCCeEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 4899999999998875554 5566688999999999974 355 2457899999999652 110112223344444
Q ss_pred HHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeec
Q 018434 273 LGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVG 318 (356)
Q Consensus 273 l~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp 318 (356)
.+.+..|.+... +-.|....+ -.++.|..|+|...+=-|
T Consensus 504 ~~~~~~P~~~t~--~~~k~~R~g-----rvfiDy~qN~~~~T~~ap 542 (610)
T PRK09633 504 YLCSQFPELFTT--ERLKKNRGN-----RLYLDYVQHAEGKTIIAP 542 (610)
T ss_pred HHHHHCcceehh--hhhHhhCCC-----CEEEEcccCCCCCeEEec
Confidence 422233443322 222222122 156677766666555544
No 53
>PRK09632 ATP-dependent DNA ligase; Reviewed
Probab=39.18 E-value=1.4e+02 Score=32.96 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCCCCchHHHHHHHHHHH
Q 018434 195 PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLG 274 (356)
Q Consensus 195 pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~ 274 (356)
|.+.-|+|.|.+++.-.| ++-+=..+|++....||.+ .|| .+.|.|+|+.+-|....+-.....|-++||-.+
T Consensus 135 PD~lv~DLDP~~~~~f~~-v~~~A~~~r~~L~~lgL~~--~~K----TSG~kGlHv~vPl~~~~~~~~~~~fa~~~A~~l 207 (764)
T PRK09632 135 ATRLVFDLDPGEGVGLAE-CAEVARAVRDLLADIGLET--FPV----TSGSKGIHLYAPLDGPVSSEGASVVAKEVARAL 207 (764)
T ss_pred CCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCce--eeE----CCCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 559999999988876555 5566688999999999975 355 235789999999964211011223334444442
Q ss_pred HHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 275 LRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 275 l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
.+..|.+.... -.|....+ -.++.|..|+|...+=-|-
T Consensus 208 ~~~~P~~~t~~--~~k~~R~g-----kvfiDy~qN~~g~T~vapY 245 (764)
T PRK09632 208 EQDHPDLVTST--MTKSLRAG-----KVFVDWSQNNGSKTTIAPY 245 (764)
T ss_pred HHHCcceehhh--hhHhhCCC-----CEEEECccCCCCCeEEecc
Confidence 33334443322 11221122 1677787777776665553
No 54
>TIGR01619 hyp_HI0040 conserved hypothetical protein, TIGR01619. This model represents a hypothetical equivalog of gamma proteobacteria, includes HI0040. These sequences do not have any similarity to known proteins by PSI-BLAST.
Probab=38.12 E-value=2.1e+02 Score=27.10 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=54.6
Q ss_pred HHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEe---
Q 018434 111 AKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINIS--- 187 (356)
Q Consensus 111 kr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve--- 187 (356)
++|++.|++.|-.+....++|-++. |... .-+..++++ +++.|+.|.
T Consensus 143 ~~Vl~~L~~~GD~l~~~R~IdHw~y----------------------F~~e----~d~~~F~e~----~~~~gy~v~~~~ 192 (249)
T TIGR01619 143 EELLDLLKKKGRDLAALYLIEHSFH----------------------FDEE----AKMFAFMDE----LHLGDISFTSLQ 192 (249)
T ss_pred HHHHHHHHHcCccccCceEeeeEEe----------------------cCCH----HHHHHHHHH----HHhcCceeeeee
Confidence 5677777777766554444444333 2111 113455554 477898882
Q ss_pred ----ee-cCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCc
Q 018434 188 ----GI-NGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGV 230 (356)
Q Consensus 188 ----~~-h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl 230 (356)
.+ ..|...+.|-+.+...+.+..+| +...-.-+.++|+++|=
T Consensus 193 ~~~~~~~~~~~~~~~y~v~l~re~~~~~~~-I~~~t~~l~~lA~~~~G 239 (249)
T TIGR01619 193 YSALAIMFEEDDEPVFLVKLEQEISLDNSE-IFEQVEQFEDIAEQFSG 239 (249)
T ss_pred ecccccccCCCCCCceEEEEEecCCCchHH-HHHHHHHHHHHHHHhCC
Confidence 22 12455678999999999988776 44444667788888763
No 55
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=36.10 E-value=54 Score=31.07 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=30.2
Q ss_pred EEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcc
Q 018434 199 EFQVGPA-VGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS 256 (356)
Q Consensus 199 Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~ 256 (356)
|+--.|+ +|.+..+++........+.....++.--==..|+.| ---|.|+|+|-..
T Consensus 52 ElRP~P~~~P~~L~~~i~~~l~~A~~~i~~~~l~W~AG~mP~~g--fp~GGHiHfsgv~ 108 (261)
T PF14395_consen 52 ELRPAPSPDPAELFENIRRALREAARRIPDRSLEWLAGSMPFPG--FPLGGHIHFSGVP 108 (261)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEecCCCCCCC--CCcCCeEEecCCC
Confidence 5545553 777777776555444444444433332111234443 4578999998543
No 56
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed
Probab=34.46 E-value=1.5e+02 Score=33.17 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=50.9
Q ss_pred HHHcC-ceEeeecCCc----CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeeccc
Q 018434 179 CLYAG-INISGINGEV----MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYS 253 (356)
Q Consensus 179 l~~~G-i~ve~~h~E~----gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~S 253 (356)
|.+|| |++.-+.+-. -|.+.-|+|.|.+++.-.+ ++.+=..+|++..+.||.+ .|| -+.|.|+||.+-
T Consensus 663 lan~~~iE~H~w~~~~~~~~~Pd~lvfDLDP~~~~~f~~-v~~aA~~~r~~L~~lgL~s--f~K----TSG~kGlHv~vP 735 (860)
T PRK05972 663 AAQMGAVELHTWNATPDRIEVPDRLVFDLDPGPGVPWKA-VVEAARLMRTRLDELGLES--FLK----TSGGKGLHVVVP 735 (860)
T ss_pred HHHhCcEEeecCCCCCCCCCCCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCce--eeE----CCCCCeEEEEEE
Confidence 33443 6655444322 4899999999998876544 5666678999999999985 355 245789999999
Q ss_pred Ccc
Q 018434 254 TKS 256 (356)
Q Consensus 254 l~~ 256 (356)
|..
T Consensus 736 l~~ 738 (860)
T PRK05972 736 LAR 738 (860)
T ss_pred cCC
Confidence 965
No 57
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.20 E-value=92 Score=29.87 Aligned_cols=65 Identities=18% Similarity=0.040 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCceEeeecCCc--CCCcEEEEcCCCh-hhHHHHHHHHHHHHHHHHHHHcCceEEecc
Q 018434 170 DIVDSHYKACLYAGINISGINGEV--MPGQWEFQVGPAV-GISAGDQLWVARYILERITEIAGVVLSFDP 236 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~--gpGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp 236 (356)
-++.++.+.|.+.|++|+.+.... -.|+|.+.+.-.- +. .++.-.++..+.+++++.|+.++.-.
T Consensus 18 GIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~--~~~~~~L~~~L~~l~~~l~l~i~l~~ 85 (286)
T PRK06027 18 GIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL--IFNLETLRADFAALAEEFEMDWRLLD 85 (286)
T ss_pred cHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC--CCCHHHHHHHHHHHHHHhCCEEEEcc
Confidence 578888889999999999998887 6778877654321 11 12266789999999999999987654
No 58
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=30.23 E-value=1.7e+02 Score=20.82 Aligned_cols=52 Identities=13% Similarity=-0.018 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEE
Q 018434 171 IVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLS 233 (356)
Q Consensus 171 ~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~AT 233 (356)
.+.++.+.+.+.||+|+++..-...++-.+.+...+ .+-++++-+++|+.+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~-----------~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSD-----------PDKAKEALKEAGFAVK 65 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECC-----------HHHHHHHHHHCCCEEE
Confidence 356666678899999998875322222222222222 1234455677787754
No 59
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=29.51 E-value=24 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=14.0
Q ss_pred cCceEeeecCCcCCCcEEEEcC
Q 018434 182 AGINISGINGEVMPGQWEFQVG 203 (356)
Q Consensus 182 ~Gi~ve~~h~E~gpGQ~Ei~l~ 203 (356)
.+-.||++.-. +||||||||.
T Consensus 82 ~~~~iESIrI~-~pG~YElNL~ 102 (131)
T PF09845_consen 82 LNDRIESIRIL-EPGSYELNLE 102 (131)
T ss_pred cccCcceEEEe-cCceEEecHH
Confidence 34445555433 7999999984
No 60
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=28.83 E-value=1e+02 Score=22.71 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCC
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 204 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 204 (356)
.++++++...|...||.-.-...+...+.|++.+.-
T Consensus 31 ~~ll~~v~~lL~~lGi~~~i~~~~~~~~~y~l~i~~ 66 (77)
T PF14528_consen 31 KELLEDVQKLLLRLGIKASIYEKKRKKGSYRLRISG 66 (77)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEECTTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCeeEEEEEcCCCceEEEEECc
Confidence 688999999999999998666555678889999865
No 61
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=28.47 E-value=43 Score=30.77 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.8
Q ss_pred cCCCCcCCCCH---HHHHHHHHHhhhhcCCcce
Q 018434 96 TPAGEPIPTNK---RHAAAKIFSHSDVVAEEPW 125 (356)
Q Consensus 96 ~~~G~p~~~~P---R~~Lkr~l~~~~~~G~~~~ 125 (356)
++-|+++..|| |..|+++.++|.++||.+.
T Consensus 173 Wplge~VKLD~TvDR~~lR~q~~rLg~LGY~~d 205 (214)
T PF11679_consen 173 WPLGEPVKLDPTVDRRRLRQQRARLGQLGYAFD 205 (214)
T ss_pred ccCCCceeccCccCHHHHHHHHHHHHhcCeeec
Confidence 45688887764 9999999999999998754
No 62
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=28.34 E-value=38 Score=29.30 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCceEE
Q 018434 216 VARYILERITEIAGVVLS 233 (356)
Q Consensus 216 ~~k~~ik~vA~~~Gl~AT 233 (356)
.+.++|++||+|||...+
T Consensus 4 k~~eiI~~IA~khgI~L~ 21 (144)
T PF11657_consen 4 KIEEIIAEIARKHGIALS 21 (144)
T ss_pred HHHHHHHHHHHHcCCccC
Confidence 367899999999999865
No 63
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.80 E-value=5.8e+02 Score=24.91 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCceEeeecCCcCCC--cEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceee
Q 018434 172 VDSHYKACLYAGINISGINGEVMPG--QWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH 249 (356)
Q Consensus 172 ~~~i~~~l~~~Gi~ve~~h~E~gpG--Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H 249 (356)
+..+.+.+.+.||..--+.++.-|- .-|+.+.+.+ .+++ --.-|.++|+++|+..||.|-.|..
T Consensus 54 l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~--~~~~----~l~~iG~~a~~~~iRLS~Hp~qfi~-------- 119 (312)
T TIGR00629 54 TMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVT--FAQK----ELREIGELAKTHQHRLTFHPGQFTQ-------- 119 (312)
T ss_pred HHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHH--HHHH----HHHHHHHHHHHcCeEEEECCCcccc--------
Confidence 4456677888999999988887662 1122222111 2222 2255889999999999999998873
Q ss_pred ecccCcccCCCCchHHHHHHHHHHHHHHHHhccccc
Q 018434 250 ANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYG 285 (356)
Q Consensus 250 ~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~ 285 (356)
|... .....+..+.-| ..|+..+-++.
T Consensus 120 ----LnS~----~~evv~~Si~~L-~~ha~~l~~mg 146 (312)
T TIGR00629 120 ----FTSP----RESVVKSAIRDL-AYHDEMLSAMK 146 (312)
T ss_pred ----CCCC----CHHHHHHHHHHH-HHHHHHHHHcC
Confidence 4321 134556677777 78887766654
No 64
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.06 E-value=1.3e+02 Score=21.79 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCC-Cc--EEEEcCCCh
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMP-GQ--WEFQVGPAV 206 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gp-GQ--~Ei~l~~~~ 206 (356)
.++.+|.+.+.+.|+++..+++...+ |+ ..+++...+
T Consensus 12 g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~ 51 (76)
T cd04888 12 GVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST 51 (76)
T ss_pred chHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc
Confidence 34566777789999999999875433 44 444444433
No 65
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=25.73 E-value=47 Score=28.61 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCceEE
Q 018434 217 ARYILERITEIAGVVLS 233 (356)
Q Consensus 217 ~k~~ik~vA~~~Gl~AT 233 (356)
+..+|++||.|||...+
T Consensus 5 i~e~I~~IA~KHGIal~ 21 (144)
T PRK13895 5 IEELIKEIAAKHGIAVG 21 (144)
T ss_pred HHHHHHHHHHHcCcccC
Confidence 57899999999999865
No 66
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=24.34 E-value=1.5e+02 Score=22.80 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCC---------C--cEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEe
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMP---------G--QWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSF 234 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gp---------G--Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATF 234 (356)
..++..+...|.+.|++|+.++.-.+- . -.|+.+.-.+ + +.--+|..+.+++++.|+..+|
T Consensus 11 a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~----~-~~~~lr~~L~~la~elgvDIav 82 (84)
T cd04871 11 AEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP----A-DLEALRAALLELASELNVDIAF 82 (84)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC----C-CHHHHHHHHHHHhcccCceEEE
Confidence 367788888899999999988876432 2 2244444222 1 3446788889999999998876
No 67
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.57 E-value=2.3e+02 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHhhhhcCCcceEeeeeeEEE
Q 018434 105 NKRHAAAKIFSHSDVVAEEPWYGIEQEYTL 134 (356)
Q Consensus 105 ~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l 134 (356)
=||..++.+++.+.. +|+++||.-
T Consensus 34 wPRRT~QDvikAlpg------lgi~l~FvQ 57 (95)
T COG4519 34 WPRRTAQDVIKALPG------LGIVLEFVQ 57 (95)
T ss_pred CchhHHHHHHHhCcC------CCeEEEeee
Confidence 489999999998743 456777765
No 68
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=23.43 E-value=1.1e+02 Score=33.85 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChh------hHHHHHHHHHHHHHHHHHHHcCceEEec
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG------ISAGDQLWVARYILERITEIAGVVLSFD 235 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~------l~aaD~~~~~k~~ik~vA~~~Gl~ATFm 235 (356)
.++++++ ...++..-|-+.-.+..||-++|+|. +.+.=.+..+++.+.+||++||+..+|.
T Consensus 416 ~~im~~l------l~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 416 PDIMEEL------LSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp HHHHHHH------CCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred HHHHHHH------HcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4555554 56777777776655678999999986 5567778888999999999999999985
No 69
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.34 E-value=3.4e+02 Score=20.63 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChh
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG 207 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~ 207 (356)
.++.++.+.|++.||+|+.+.+ +...+-+++...+.
T Consensus 16 g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~ 51 (78)
T cd04933 16 GFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKL 51 (78)
T ss_pred CHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhh
Confidence 3455666678999999999975 33667777777665
No 70
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.08 E-value=73 Score=22.76 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=28.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCc
Q 018434 198 WEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK 255 (356)
Q Consensus 198 ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~ 255 (356)
-++.+.|. ... -|.+|.++|+.+||... ..|+|-+-|+.++
T Consensus 17 ~~~~fppm---~~~-----~R~~vH~lA~~~~L~S~---------S~G~g~~R~v~v~ 57 (58)
T cd02646 17 DSLSFPPM---DKH-----GRKTIHKLANCYNLKSK---------SRGKGKKRFVTVT 57 (58)
T ss_pred ceEecCCC---CHH-----HHHHHHHHHHHcCCccc---------ccccCCceEEEEE
Confidence 35666664 333 36789999999999842 5678877776654
No 71
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=21.49 E-value=69 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred cCCCcceeeeccCCCCCCccEEEecCCCC
Q 018434 308 VANRGASIRVGRDTEKEGKGYFEDRRPAS 336 (356)
Q Consensus 308 ~~NRs~~iRvp~~~~~~~~~riE~R~~da 336 (356)
..|||-+||+|..-.-+. .++|++.-|.
T Consensus 7 ~snrSQAVRLP~e~~f~~-~~VeI~r~G~ 34 (74)
T COG4456 7 RSNRSQAVRLPKEFRFPE-DRVEIIREGD 34 (74)
T ss_pred ecCCeeeEecchheecCC-cEEEEEEeCC
Confidence 479999999997643222 6888876553
No 72
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.23 E-value=2.9e+02 Score=20.64 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChh
Q 018434 171 IVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG 207 (356)
Q Consensus 171 ~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~ 207 (356)
++.++.+.|.+.||+|+.+.+ +..++-+++...+.
T Consensus 17 ~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~ 51 (75)
T cd04932 17 FLAKVFGILAKHNISVDLITT--SEISVALTLDNTGS 51 (75)
T ss_pred HHHHHHHHHHHcCCcEEEEee--cCCEEEEEEecccc
Confidence 445566678999999999975 33778888888663
No 73
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.72 E-value=3.2e+02 Score=19.34 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCceEeeecCCc--CCCc--EEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEe
Q 018434 172 VDSHYKACLYAGINISGINGEV--MPGQ--WEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSF 234 (356)
Q Consensus 172 ~~~i~~~l~~~Gi~ve~~h~E~--gpGQ--~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATF 234 (356)
+.++.+.+.+.|++++++.... ..++ ++|.+...++ | -+++.-++.|+.+.+
T Consensus 15 l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~----~-------~~~~~L~~~G~~v~~ 70 (72)
T cd04883 15 LADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP----R-------PIIEDLRRAGYEVLW 70 (72)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH----H-------HHHHHHHHCCCeeeC
Confidence 4556667888999998774322 2344 4444433232 2 333444566877654
No 74
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.49 E-value=1.8e+02 Score=20.22 Aligned_cols=38 Identities=24% Similarity=0.064 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChh
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG 207 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~ 207 (356)
.+..++...|.+.||++..+.......++-+.+...+.
T Consensus 16 ~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~ 53 (66)
T cd04916 16 GVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDA 53 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHH
Confidence 34455666788999999999865444666666666553
No 75
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.31 E-value=2.2e+02 Score=19.30 Aligned_cols=40 Identities=18% Similarity=-0.055 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCceEeeecCCcCC-CcEEEEcCCChhhHHH
Q 018434 172 VDSHYKACLYAGINISGINGEVMP-GQWEFQVGPAVGISAG 211 (356)
Q Consensus 172 ~~~i~~~l~~~Gi~ve~~h~E~gp-GQ~Ei~l~~~~~l~aa 211 (356)
+.++...+.+.|++|+.+...... ++-.+.+.-.+.-+|.
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~ 52 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAK 52 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHH
Confidence 455566788899999988865544 5555555555544433
No 76
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=20.29 E-value=1.3e+02 Score=27.67 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCcCCCc-------EEEEcCCCh
Q 018434 169 RDIVDSHYKACLYAGINISGINGEVMPGQ-------WEFQVGPAV 206 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ-------~Ei~l~~~~ 206 (356)
.++++.+..+++.+|+.+.+...|.+++- .|+.+.|+.
T Consensus 154 hP~m~~vl~AiE~lGfrL~~vdCEqa~yF~~a~PFVQEfEFvPTt 198 (270)
T COG4326 154 HPMMDGVLSAIEALGFRLRQVDCEQAKYFGGALPFVQEFEFVPTT 198 (270)
T ss_pred chHHHHHHHHHHhhccEeeeccccccccccccccceeEEEEeccC
Confidence 57888888999999999999999999864 477777764
No 77
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.05 E-value=2.3e+02 Score=19.60 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChh
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG 207 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~ 207 (356)
.+..++.+.|.+.||++..+........+-+.+...+.
T Consensus 16 ~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~ 53 (66)
T cd04924 16 GVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDG 53 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHH
Confidence 34455666789999999988754333444455555443
Done!