Query 018434
Match_columns 356
No_of_seqs 161 out of 1562
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 1.8E-98 6E-103 737.1 29.6 346 2-354 10-355 (370)
2 2d3a_A Glutamine synthetase; l 100.0 2.3E-96 8E-101 719.2 31.0 355 2-356 2-356 (356)
3 2ojw_A Glutamine synthetase; a 100.0 3.1E-94 1E-98 710.2 30.2 349 2-356 31-383 (384)
4 3ng0_A Glutamine synthetase; G 100.0 1.7E-89 5.8E-94 693.0 28.7 330 16-354 15-385 (473)
5 3qaj_A Glutamine synthetase; A 100.0 1.2E-90 3.9E-95 695.8 18.4 324 16-354 16-357 (444)
6 4hpp_A Probable glutamine synt 100.0 4.5E-88 1.5E-92 676.4 24.3 318 16-354 5-356 (443)
7 4acf_A Glutamine synthetase 1; 100.0 2E-86 6.9E-91 673.6 26.8 331 15-354 23-398 (486)
8 1f52_A Glutamine synthetase; A 100.0 1.8E-85 6.1E-90 663.6 27.3 329 16-354 12-381 (468)
9 2j9i_A Glutamate-ammonia ligas 100.0 1.8E-77 6.1E-82 597.4 10.6 306 16-354 12-343 (421)
10 3o6x_A Glutamine synthetase; t 100.0 1.5E-58 5.1E-63 476.6 16.0 280 55-354 128-499 (729)
11 1r8g_A Hypothetical protein YB 98.3 1.5E-05 5.1E-10 77.7 14.9 128 123-287 11-167 (372)
12 2gwd_A Glutamate cysteine liga 97.9 6.1E-05 2.1E-09 75.3 12.6 151 106-288 17-213 (449)
13 3ln6_A Glutathione biosynthesi 89.0 1.1 3.7E-05 47.4 8.8 38 188-225 54-92 (750)
14 3ln7_A Glutathione biosynthesi 83.6 3.6 0.00012 43.4 9.3 38 188-225 53-91 (757)
15 1nxi_A Conserved hypothetical 79.9 5.2 0.00018 32.8 7.1 90 111-231 22-114 (132)
16 2fao_A Probable ATP-dependent 73.0 34 0.0011 32.0 11.4 125 179-319 111-242 (309)
17 1zpv_A ACT domain protein; str 72.8 2.7 9.3E-05 31.2 3.3 66 170-237 17-82 (91)
18 1va6_A Glutamate--cysteine lig 66.1 14 0.00049 37.1 7.8 18 122-139 20-37 (518)
19 3nzt_A Glutamate--cysteine lig 57.8 17 0.0006 36.5 6.6 49 188-236 67-117 (525)
20 1u8s_A Glycine cleavage system 51.2 14 0.00047 31.5 4.1 76 170-251 105-189 (192)
21 1v5s_A MAP/microtubule affinit 50.8 47 0.0016 26.9 7.0 63 168-230 39-120 (126)
22 3ose_A Serine/threonine-protei 47.9 23 0.0008 28.2 4.7 63 168-230 39-120 (120)
23 2iru_A Putative DNA ligase-lik 43.6 72 0.0025 29.7 7.9 125 179-319 105-244 (303)
24 1u8s_A Glycine cleavage system 39.1 1.5E+02 0.0051 24.8 8.9 66 170-238 18-83 (192)
25 2nyi_A Unknown protein; protei 39.0 31 0.0011 29.5 4.5 67 169-238 104-176 (195)
26 3tc3_A UV damage endonuclease; 35.4 65 0.0022 30.1 6.3 63 172-240 62-126 (310)
27 1q02_A Sequestosome 1; helical 28.0 46 0.0016 22.6 2.8 23 99-123 1-23 (52)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-98 Score=737.13 Aligned_cols=346 Identities=58% Similarity=1.066 Sum_probs=297.3
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeecC
Q 018434 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~P 81 (356)
.++++||++ +|.++++|+++|+|++| .+|||+++++.+.+.++++++|.||||++++..++++|++|+|||++++|
T Consensus 10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P 85 (370)
T 3fky_A 10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP 85 (370)
T ss_dssp --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence 468999999 89999999999999999 99999999999888888889999999999998888999999999999999
Q ss_pred CCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018434 82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV 161 (356)
Q Consensus 82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
|+++++++|+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+.+. .+.+||.++.|.++++||+..
T Consensus 86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~ 162 (370)
T 3fky_A 86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV 162 (370)
T ss_dssp TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence 9997799999999999999999999999999999886 9999999999999999864 355777666788889998776
Q ss_pred CcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018434 162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g 241 (356)
.....+.++++++++++|+++||+||++|||+|||||||++.|++++++||++++||++||+||++||++|||||||+.|
T Consensus 163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g 242 (370)
T 3fky_A 163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG 242 (370)
T ss_dssp STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence 65544558999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccCC
Q 018434 242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDT 321 (356)
Q Consensus 242 ~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~~ 321 (356)
|++|||||+|+|||+.++++|++.+++||+||+++|+++|++|+.||||||+|++|+|...+++||.+||+++||||...
T Consensus 243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~ 322 (370)
T 3fky_A 243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSV 322 (370)
T ss_dssp SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHH
T ss_pred CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCC
Confidence 48999999999999865456788889999999559999999999999999999999995446899999999999999754
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 322 EKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 322 ~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
++..++|||+|+||++|||||++|+||+|||+|
T Consensus 323 ~~~~~~riE~R~pda~aNPYLa~Aailaagl~G 355 (370)
T 3fky_A 323 AKEGYGYFEDRRPASNIDPYLVTGIMCETVCGA 355 (370)
T ss_dssp HHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcC
Confidence 332246999999999999999999999999999
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=2.3e-96 Score=719.16 Aligned_cols=355 Identities=87% Similarity=1.495 Sum_probs=314.8
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeecC
Q 018434 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~P 81 (356)
|-+....+.+||+|.++.+|+++|+|+.|+++|||+++++.+.+.++++++++||||++++..+.++|++|+|||++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fdgss~~~~~~~~sD~~l~PDt~~~~P 81 (356)
T 2d3a_A 2 ACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (356)
T ss_dssp -CHHHHHTCCGGGTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEEEEEECT
T ss_pred CccchhhccCCCCCCCeEEEEEEEEcCCCCcccceEEECCcchhhHhhcCcceecccccccccCcCCcEEEEEEEEEECC
Confidence 33333344677789999999999999999999999999999988888888999999999887777999999999999999
Q ss_pred CCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018434 82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV 161 (356)
Q Consensus 82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
|+++++++|+||++++||+|++.|||++|||++++++++|+++++|+|+|||||+++.+.+.+|+..+.+.++++||+..
T Consensus 82 ~~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~~ 161 (356)
T 2d3a_A 82 FRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGI 161 (356)
T ss_dssp TTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTCC
T ss_pred cCCCCceEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcCc
Confidence 99866999999999999999999999999999999999999999999999999997644344555445677788898877
Q ss_pred CcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018434 162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g 241 (356)
+.++.+.++++++++++|+++||+||++|||+|||||||+++|++++++||++++||++||+||++||++|||||||+.+
T Consensus 162 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~ 241 (356)
T 2d3a_A 162 GAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPG 241 (356)
T ss_dssp STTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSCS
T ss_pred ccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEECCCccCC
Confidence 66554458999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccccccCCCCCCCCCCCceeeccCCCcceeeeccCC
Q 018434 242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDT 321 (356)
Q Consensus 242 ~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~~ 321 (356)
+++|||||+|+|||+.++++|.+.|..++.+++++|+++|++|++||||||+|++|+|++.+++||.+||+++||||...
T Consensus 242 d~~GSG~H~H~Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~~~nSYkRL~pg~eap~~~~~swG~~NRsa~iRIp~~~ 321 (356)
T 2d3a_A 242 DWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRET 321 (356)
T ss_dssp SSCCCBEEEEEECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHH
T ss_pred CCCCCcceEEechhhhccCCCHHHHHHHHHHHHHHHHHHHHhHccChHHHccCCccCCCcceeEEeccCCeeeEEEccCC
Confidence 58999999999998754345678888888887799999999999999999999999996679999999999999999653
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018434 322 EKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356 (356)
Q Consensus 322 ~~~~~~riE~R~~da~aNPYLalAailaAgl~G~~ 356 (356)
.+.+++|||+|+||++|||||++||+|+||++++|
T Consensus 322 ~~~~~~riE~R~pd~~aNPYLa~Aailaagl~~~~ 356 (356)
T 2d3a_A 322 EQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356 (356)
T ss_dssp HHTTCCCEEECCCBTTCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 22235799999999999999999999999999876
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=3.1e-94 Score=710.16 Aligned_cols=349 Identities=54% Similarity=1.015 Sum_probs=306.9
Q ss_pred hhhHHhhcCCCCCCCCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCcccCcCCCccEEEEeeeeeecC
Q 018434 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PDt~~~~P 81 (356)
..+++||++ ++.++.+|+++|+|++|.++|||++|++.+.+.++.+|+++||||++++...+++|++|+|||++++|
T Consensus 31 ~~l~~~l~~---~~~~~~~v~~~~~D~~G~~~R~K~ip~~~~~~~~~~~p~~~~dgss~~~~~~~~sD~~l~PDt~~~~P 107 (384)
T 2ojw_A 31 GIKQVYMSL---PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDP 107 (384)
T ss_dssp HHHHHHHTS---CCCSCEEEEEEEECTTSSCEEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEEEEEEEEEEECT
T ss_pred HHHHHHHhC---CCCCcEEEEEEEECCCCCeeeEEEEEHHHhhhhHhhCccccccCcccccccCCCCcEEEEeeEEEECC
Confidence 357899999 57889999999999999779999999999988887788999999999877778999999999999999
Q ss_pred CCCCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018434 82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV 161 (356)
Q Consensus 82 w~~~~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (356)
|+++++++|+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+++.. +.+++.++.+.++++||+..
T Consensus 108 w~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~~~~g~p~~~g~y~~~~ 184 (384)
T 2ojw_A 108 FRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGV 184 (384)
T ss_dssp TTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-CCS-BTTCCTTSCCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccCCC-cccccCCCccCCCCCCCccc
Confidence 9986699999999999999999999999999999997 89999999999999987642 33555555677888898877
Q ss_pred CcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018434 162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQG 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g 241 (356)
..++.+.++++++++++|+++||+||++|+|+|||||||++.|+++|++||++++||++||+||++||+.|||||||+.+
T Consensus 185 ~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl~aTFmpKP~~~ 264 (384)
T 2ojw_A 185 GADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPG 264 (384)
T ss_dssp STTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCS
T ss_pred ccchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 66544557999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccc----cccccccCCCCCCCCCCCceeeccCCCcceeee
Q 018434 242 DWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRV 317 (356)
Q Consensus 242 ~~~GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~----~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRv 317 (356)
|++|||||+|+||++.++++|.+.|+++++|++++|++++++| +.||||||+|++|+|++++++||.+||+++|||
T Consensus 265 d~~GSG~H~H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsykRL~pg~ea~~~~~~sWG~~NRsa~iRI 344 (384)
T 2ojw_A 265 NWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRI 344 (384)
T ss_dssp SSCCCBEEEEEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSEEE
T ss_pred CCCCCeeeEEeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchhhccCCcccCCCceEEeecccCCceEEe
Confidence 5799999999999864333578889999999988999999999 359999999999999777999999999999999
Q ss_pred ccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018434 318 GRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356 (356)
Q Consensus 318 p~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G~~ 356 (356)
|...++.+++|||+|+||++|||||++||+|+||+++++
T Consensus 345 p~~~~~~~~~riE~R~pd~~aNPYLa~Aailaagl~~~~ 383 (384)
T 2ojw_A 345 PRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNET 383 (384)
T ss_dssp CHHHHHHTCSCEEECCCBTTCCHHHHHHHHHHHHTSCCC
T ss_pred ecCCCCCCCCEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 965322234799999999999999999999999999854
No 4
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=1.7e-89 Score=693.00 Aligned_cols=330 Identities=23% Similarity=0.305 Sum_probs=287.5
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCC-CCCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCCeEEEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~v~ 91 (356)
.+|++|++.|+|++| ++|||++|++.+.+ .++ .++.||||++ |+..++++|++|+|| |++++||.++++++|+
T Consensus 15 ~~i~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~--~G~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~a~v~ 91 (473)
T 3ng0_A 15 ENIKIIDLKFIDTPG-IWQHCSFYYDQLDENSFT--EGIPFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMI 91 (473)
T ss_dssp TTCCEEEEEEECSSS-CEEEEEEEGGGCCGGGGT--TCEEEETTSSTTSCCGGGCEEEEEECGGGCEECTTCSSCEEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHHh--CCCccccccccccccCCCCcEEEEeecCccEECCcCCCCcEEEE
Confidence 489999999999999 99999999987765 333 2678999988 787767999999999 7999999987799999
Q ss_pred EEEecC-CCCcCCCCHHHHHHHHHHhhhhcCC--cceEeeeeeEEEeccCC-------------CCCCCCCC--------
Q 018434 92 CDAYTP-AGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDV-------------KWPLGWPI-------- 147 (356)
Q Consensus 92 ~d~~~~-~G~p~~~~PR~~Lkr~l~~~~~~G~--~~~~g~E~EF~l~~~~~-------------~~~~~~~~-------- 147 (356)
||++++ +|+|++.|||++|||++++++++|+ ++.+|+|+|||||+.+. ..+.+|+.
T Consensus 92 cd~~~~~~g~p~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (473)
T 3ng0_A 92 CSIKEPRTGEWYNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGN 171 (473)
T ss_dssp EEEECTTTSSBCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTCGGGTTCCCTTCC
T ss_pred EEEeECCCCCCCCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeecccccccccccccccccccccccccccccCC
Confidence 999998 8999999999999999999998876 89999999999998521 00111211
Q ss_pred -CCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcC-CCcEEEEcCCChhhHHHHHHHHHHHHHHHHH
Q 018434 148 -GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILERIT 225 (356)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA 225 (356)
+..+.++++||+..+.+. .++++++|+++|+++||+||++|||+| ||||||++.|++++++||++++||++||+||
T Consensus 172 ~g~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA 249 (473)
T 3ng0_A 172 LGYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKYVIKNVA 249 (473)
T ss_dssp CCCCCCTTCCSSCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCccccccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHHHHHHHHHHHHHHHH
Confidence 223556778877665544 368999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHcCceEEecccccCCCCCCceeeecccCcccC-----CC--Cch-HHHHHHHHHHHHHHHHhcccccc---cccccCCC
Q 018434 226 EIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMR-----ND--GGF-EVIKKAIEKLGLRHSEHIAAYGE---GNERRLTG 294 (356)
Q Consensus 226 ~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~-----~~--~~~-~~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~ 294 (356)
++||++|||||||+.+ .+|||||+|+|||+.. ++ .++ ...++||||| |+|+++++||++ ||||||+|
T Consensus 250 ~~~G~~aTFmpKP~~~-~~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~Pt~NSYkRL~p 327 (473)
T 3ng0_A 250 KKYGKTVTFMPKPIFN-DNGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGI-LKHAPALLAFTNPTTNSYKRLVP 327 (473)
T ss_dssp HHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHHHHBBT
T ss_pred HHhCCEEEEcCcccCC-CCCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCcchhhcccC
Confidence 9999999999999995 7999999999999632 11 244 3459999999 999999999985 99999999
Q ss_pred CCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 295 KHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 295 ~~~a~~~~~~~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
++||| ++++||.+|||++||||......+++|||+|+||++|||||++||+|+|||+|
T Consensus 328 g~~AP--~~~~Wg~~NRsa~iRip~~~~~~~~~RiE~R~pd~~aNPYLa~Aa~LaAGldG 385 (473)
T 3ng0_A 328 GFEAP--VNLAYSQGNRSASVRIPLSGGNPKAKRLEFRCPDATSNPYLAFAAMLCAGIDG 385 (473)
T ss_dssp TTBCC--CBCCEEESCTTSSEEECCCSSCGGGCCEEECSCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcCc--cceeeeccCCcCceeeeccCCCCCcceEEeecCCCCCCHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999753333468999999999999999999999999999
No 5
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-90 Score=695.78 Aligned_cols=324 Identities=23% Similarity=0.318 Sum_probs=286.7
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCC--CeEEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRG--NNILV 90 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~--~~a~v 90 (356)
.+|++|+++|+|++| ++|||.+|++.+.+.++. ++.||||++ |+...+++|++|+|| |++++||.++ ++|+|
T Consensus 16 ~~i~~v~l~~~D~~G-~~r~k~ip~~~~~~~~~~--G~~fdgssi~g~~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~a~v 92 (444)
T 3qaj_A 16 ENVKYIRLQFTDILG-TIKNVEIPVSQLGKALDN--KVMFDGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARF 92 (444)
T ss_dssp HTCCEEEEEEECSSS-CEEEEEEEGGGHHHHHTT--CCEEETTTSTTSSCTTCCEEECCBCGGGCEEEHHHHHHHCEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHhC--CccccCccccCccCCCCCCEEEEEecCceEECccccCCCCeEEE
Confidence 479999999999999 999999999876443332 678999988 887778999999999 7999999875 59999
Q ss_pred EEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCc-ceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHH
Q 018434 91 MCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGR 169 (356)
Q Consensus 91 ~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
+||++++||+|++.|||++|||++++++++|++ +.+|+|+|||||+.+.+ +.+. ..+.++++||+..+.+. ..
T Consensus 93 ~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~~~~~~y~~~~~~d~--~~ 166 (444)
T 3qaj_A 93 ICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LELNDKGGYFDLAPTDL--GE 166 (444)
T ss_dssp EBCCBCTTSCBCSSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEESCCCCTTCCTTTSC--CT
T ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcCcCCCCccccCCCcc--hH
Confidence 999999999999999999999999999999999 99999999999998653 2211 13456778886665543 25
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceee
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH 249 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H 249 (356)
+++++|+++|+++||+||++|||+|||||||++.|++++++||++++||++||+||++||++|||||||+.+ .+|||||
T Consensus 167 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~-~~GsG~H 245 (444)
T 3qaj_A 167 NCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFG-VNGSGMH 245 (444)
T ss_dssp THHHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECCSCSSTT-SCCCCEE
T ss_pred HHHHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEcCCcCCC-CCCCcce
Confidence 778888899999999999999999999999999999999999999999999999999999999999999995 8999999
Q ss_pred ecccCcccC-----C---CCchH-HHHHHHHHHHHHHHHhcccccc---cccccCCCCCCCCCCCceeeccCCCcceeee
Q 018434 250 ANYSTKSMR-----N---DGGFE-VIKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINTFKWGVANRGASIRV 317 (356)
Q Consensus 250 ~H~Sl~~~~-----~---~~~~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRv 317 (356)
+|+|||+.. + +.+++ ..++||||| |+|+++++||++ ||||||+|++||| ++++||.+|||++|||
T Consensus 246 ~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~pg~~AP--~~~~Wg~~NRsa~iRi 322 (444)
T 3qaj_A 246 CNLSLFKNGVNAFFDENADLQLSETAKHFIAGI-VKHATSFTAVTNPTVNSYKRLVPGYEAP--CYVAWSAQNRSPLIRI 322 (444)
T ss_dssp EEEEEEETTEETTCCTTSSSSCCHHHHHHHHHH-HHTHHHHHHHHSCSSTHHHHSCTTSSSS--CBCCEESSCSSSSEEC
T ss_pred eeeccccCCCcccCCCCcccchHHHHHHHHHHH-HHHHHHHHHHHCCCCcccccCCCCCcCC--CcceeecCCCcceEee
Confidence 999999732 1 12454 559999999 999999999985 9999999999998 9999999999999999
Q ss_pred ccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 318 GRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 318 p~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
|...+ +++|||+|+||++|||||++||+|+|||+|
T Consensus 323 p~~~~--~~~RiE~R~pd~~aNPYLa~Aa~LaAGldG 357 (444)
T 3qaj_A 323 PASRG--ISTRVEVRSVDPAANPYLALSVLLAAGLDG 357 (444)
T ss_dssp CSCCG--GGCCEEECCCCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCC--CCceEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 96543 357999999999999999999999999999
No 6
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.5e-88 Score=676.38 Aligned_cols=318 Identities=16% Similarity=0.135 Sum_probs=277.5
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCC--c-ccCc-------CCCccEEEEee--eeeecCCC
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSS--T-GQAP-------GEDSEVILYPQ--AIFKDPFR 83 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~--~-g~~~-------~~~~D~~l~PD--t~~~~Pw~ 83 (356)
.+|++|+++|+|++| ++|||++|++.+.+.++. ++.|+++. + ++.. .+++|++|+|| |++++||.
T Consensus 5 ~~v~~v~l~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~f~~s~~~~~~~~~~~~~~~~~~~~D~~l~PD~~T~~~~Pw~ 81 (443)
T 4hpp_A 5 QPVRLVSFVTTDLAG-ITRGRSLPLATLEEQLAS--GCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDPNSRVRVEQG 81 (443)
T ss_dssp CCCCEEEEEEECTTS-CEEEEEEEGGGHHHHHTT--CEEECGGGGGCCTTSCCCTTCSCSSSCCEEEEECGGGCEEECCC
T ss_pred CCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhC--CcccCchhheeeccCccccccCCCCCCCEEEEEcccceEECCcc
Confidence 578999999999999 999999999876554332 45565542 2 2211 24699999999 79999999
Q ss_pred CC----CeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcc
Q 018434 84 RG----NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYC 159 (356)
Q Consensus 84 ~~----~~a~v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (356)
++ ++|+|+||++++||+|++.|||++|||++++++++|+++++|+|+|||||+. .|.++++||+
T Consensus 82 ~~~~~~~~a~v~cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y~ 149 (443)
T 4hpp_A 82 PDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAFS 149 (443)
T ss_dssp SSTTSCCEEEEEEEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTTC
T ss_pred cccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccCC
Confidence 82 5999999999999999999999999999999999999999999999999962 2345667887
Q ss_pred ccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEeccccc
Q 018434 160 GVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~ 239 (356)
..+.+. .++++++|+++|+++||+||++|||+|||||||++.|++++++||++++||++||+||++||++|||||||+
T Consensus 150 ~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~ 227 (443)
T 4hpp_A 150 LQAQRA--AGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLPA 227 (443)
T ss_dssp HHHHHH--TTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSSS
T ss_pred CCcccc--hHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccC
Confidence 655433 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeecccCcccCC------C---CchH-HHHHHHHHHHHHHHHhcccccc---cccccCCCCCCCCCCCceee
Q 018434 240 QGDWNGAGAHANYSTKSMRN------D---GGFE-VIKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINTFKW 306 (356)
Q Consensus 240 ~g~~~GsG~H~H~Sl~~~~~------~---~~~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a~~~~~~~W 306 (356)
.+ .+|||||+|+|||+.++ + .+++ ..++||+|| |+|+++++||++ ||||||+|++||| ++++|
T Consensus 228 ~~-~~GsG~H~h~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~P~~NSYkRL~pg~~AP--~~~~W 303 (443)
T 4hpp_A 228 PG-AVTNGVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGV-LAHLPALCALTAPTAASYLRLKPHHWSA--AYACL 303 (443)
T ss_dssp TT-CCCCCEEEEEEEEETTSCBSSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSGGGHHHHSCSTTCC--CBCCE
T ss_pred CC-CCcccceeeeeeecCCCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCCcchhccCCCCcCC--Cccee
Confidence 95 89999999999997431 1 2444 459999999 999999999985 9999999999999 99999
Q ss_pred ccCCCcceeeeccCC---CC--CCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 307 GVANRGASIRVGRDT---EK--EGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 307 G~~NRs~~iRvp~~~---~~--~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
|.+||+++||||... +. .+++|||+|+||++|||||++||+|+|||+|
T Consensus 304 G~~NRsa~iRip~~~~~~~~~~~~~~riE~R~pd~~aNPYLa~AaiLaAGl~G 356 (443)
T 4hpp_A 304 GLRNREAALRICPVVSVGGKPLGKQYNLEFRPMDATTCPHLAMAAVLIAGRLG 356 (443)
T ss_dssp ESSCTTSSEEEECCCCSSSCCSSTTCEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCceeEEeccccccCCCccccccEEEEcCCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999864 22 2458999999999999999999999999999
No 7
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=2e-86 Score=673.59 Aligned_cols=331 Identities=22% Similarity=0.280 Sum_probs=284.3
Q ss_pred CCCEEEEEEEEEcCCCCcceeeEEeCCCCCCC-CCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCCeEEE
Q 018434 15 STDKIIAEYIWIGGSGMDMRSKARTLPGPVSD-PSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGNNILV 90 (356)
Q Consensus 15 ~~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~-~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~v 90 (356)
+.+|++|++.|+|++| ++|||++|++.+.+. ++ .|+.||||++ ||..++++|++|+|| |++++||.+++++.|
T Consensus 23 ~~~I~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~--~G~~fdgssi~G~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v 99 (486)
T 4acf_A 23 DEKVEYVDVRFCDLPG-IMQHFTIPASAFDKSVFD--DGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNI 99 (486)
T ss_dssp HTTCCEEEEEEECSSS-CEEEEEEEGGGCSHHHHH--TCEEEEGGGSTTSCCGGGCEEEEEECGGGCEECSSCSSCEEEE
T ss_pred HCCCcEEEEEEECCCC-cEEEEEEEHHHHHHHHHH--CCCeeecccccccccCCCCCEEEEEccceeEECCcCCCccEEE
Confidence 3589999999999999 999999999876532 22 2678999998 888778899999999 799999999888899
Q ss_pred EEEEecC-CCCcCCCCHHHHHHHHHHhhhhcC--CcceEeeeeeEEEeccCC-----C-------------------CCC
Q 018434 91 MCDAYTP-AGEPIPTNKRHAAAKIFSHSDVVA--EEPWYGIEQEYTLLQKDV-----K-------------------WPL 143 (356)
Q Consensus 91 ~~d~~~~-~G~p~~~~PR~~Lkr~l~~~~~~G--~~~~~g~E~EF~l~~~~~-----~-------------------~~~ 143 (356)
+|+++++ +|+|++.|||++|||++++++++| +++.+|+|+|||||++.. . .+.
T Consensus 100 ~~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 179 (486)
T 4acf_A 100 NFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEAD 179 (486)
T ss_dssp EEEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTT
T ss_pred EEEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccCCccccccCCCCcccCC
Confidence 9999985 799999999999999999998865 578899999999997421 0 011
Q ss_pred CCCCCC-CCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCC-CcEEEEcCCChhhHHHHHHHHHHHHH
Q 018434 144 GWPIGG-YPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMP-GQWEFQVGPAVGISAGDQLWVARYIL 221 (356)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gp-GQ~Ei~l~~~~~l~aaD~~~~~k~~i 221 (356)
++|..+ .+...++||...+.+. .++++++++++|+++||+|+++|+|+|| |||||++.|+++|++||++++||++|
T Consensus 180 g~p~~~~~~~~~~~y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~aAD~~~~~k~~v 257 (486)
T 4acf_A 180 GSPNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYII 257 (486)
T ss_dssp SCBCCCCCBCTTCCSSBCTTTSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccCCccccCCcchh--HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhhhhhHHHHHHHHH
Confidence 122211 2334456665554443 3799999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHcCceEEecccccCCCCCCceeeecccCcccC-----CC---Cch-HHHHHHHHHHHHHHHHhcccccc---ccc
Q 018434 222 ERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMR-----ND---GGF-EVIKKAIEKLGLRHSEHIAAYGE---GNE 289 (356)
Q Consensus 222 k~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~-----~~---~~~-~~~~~~iaGl~l~h~~al~a~~~---nsY 289 (356)
|+||++||+.|||||||+.+ .+|||||+|+|||+.. ++ .++ ...++||+|| |+|+++++||++ |||
T Consensus 258 k~vA~~~G~~aTFmpKP~~~-~~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~PtvNSY 335 (486)
T 4acf_A 258 KNTAWQNGKTVTFMPKPLFG-DNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSY 335 (486)
T ss_dssp HHHHHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHH
T ss_pred HHHHHHcCCeEEEeeccccC-CCcccceeeeeeccCCCccccccccccccchHHHHHHHHH-HHhhhcceeeecCCCcch
Confidence 99999999999999999995 8999999999999742 11 234 4569999999 999999999985 999
Q ss_pred ccCCCCCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 290 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 290 kRl~~~~~a~~~~~~~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
|||+|++||| ++++||.+||+++||||.....++++|||+|+||++|||||++||+|+|||+|
T Consensus 336 kRl~pg~~AP--~~~~wg~~NRsa~iRip~~~~~~~~~riE~R~pd~~aNPYLalAailaAGldG 398 (486)
T 4acf_A 336 KRLVPGYEAP--INLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDG 398 (486)
T ss_dssp HHSSTTSSSC--SBSCEEETCTTSSEEECCCTTCTTTCCEEECCCCSSSCHHHHHHHHHHHHHHH
T ss_pred hccCCCCcCC--ceeEEeccCCCcceEecccCCCCccceeeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999998 99999999999999999765555568999999999999999999999999999
No 8
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=1.8e-85 Score=663.57 Aligned_cols=329 Identities=21% Similarity=0.289 Sum_probs=286.1
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCC-CCCCCCcccccCCCc-ccCcCCCccEEEEee--eeeecCCCCCCeEEEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQ--AIFKDPFRRGNNILVM 91 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD--t~~~~Pw~~~~~a~v~ 91 (356)
.+|++|++.|+|+.| ++|+|.+|++.+.+ .++ .++.||||++ |+...+++|++|+|| |++++||.++++++|+
T Consensus 12 ~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~--~g~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~ 88 (468)
T 1f52_A 12 HEVKFVDLRFTDTKG-KEQHVTIPAHQVNAEFFE--EGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIR 88 (468)
T ss_dssp TTCCEEEEEEECTTS-CEEEEEEEGGGCCHHHHH--HCEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSCSSCEEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhh--CceeeccccccccccCCCCCEEEEEecCCcEEccccCCCceEEE
Confidence 389999999999999 99999999886654 122 3688999887 887778999999999 7999999976699999
Q ss_pred EEEecC-CCCcCCCCHHHHHHHHHHhhhhcCC--cceEeeeeeEEEeccCC-----C--------CCCCCCC--------
Q 018434 92 CDAYTP-AGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDV-----K--------WPLGWPI-------- 147 (356)
Q Consensus 92 ~d~~~~-~G~p~~~~PR~~Lkr~l~~~~~~G~--~~~~g~E~EF~l~~~~~-----~--------~~~~~~~-------- 147 (356)
||++++ +|+|++.|||++|||++++++++|+ ++.+|+|+|||||+.+. + ...+|+.
T Consensus 89 ~d~~~~~~G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (468)
T 1f52_A 89 CDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGN 168 (468)
T ss_dssp EEEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCC
T ss_pred EEEEeCCCCCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCccccccccccccccCCCccccccC
Confidence 999999 7999999999999999999999999 89999999999998531 0 0011211
Q ss_pred -CCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeecCCcCCC-cEEEEcCCChhhHHHHHHHHHHHHHHHHH
Q 018434 148 -GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPG-QWEFQVGPAVGISAGDQLWVARYILERIT 225 (356)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpG-Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA 225 (356)
+..+.++++||+..+.+. .++++++|++.|+++||+|++.|+|+||| ||||++.|++++++||++++||++||+||
T Consensus 169 ~g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA 246 (468)
T 1f52_A 169 KGHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVA 246 (468)
T ss_dssp CCCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 123556778887776643 47999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHcCceEEecccccCCCCCCceeeecccCcccC-----CC--Cch-HHHHHHHHHHHHHHHHhcccccc---cccccCCC
Q 018434 226 EIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMR-----ND--GGF-EVIKKAIEKLGLRHSEHIAAYGE---GNERRLTG 294 (356)
Q Consensus 226 ~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~-----~~--~~~-~~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~ 294 (356)
++||++|||||||+.| .+|||||+|+|||+.. ++ .++ ...++||+|| |+|+++++||++ ||||||+|
T Consensus 247 ~~hGl~atFmpKP~~g-~~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGl-l~h~~~l~a~~ap~~NSYkRL~p 324 (468)
T 1f52_A 247 HRFGKTATFMPKPMFG-DNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVP 324 (468)
T ss_dssp HHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSS
T ss_pred HHhCCEEEEeCCCCCC-CCCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHH-HHHHHHhHhHhcCCccchhccCC
Confidence 9999999999999995 8999999999999732 11 233 3569999999 999999999975 99999999
Q ss_pred CCCCCCCCceeeccCCCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 295 KHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 295 ~~~a~~~~~~~WG~~NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
++||| ++++||.+||+++||||... .+.++|||+|+||++|||||++||+|+|||+|
T Consensus 325 g~eAP--~~i~wg~~NRsa~iRiP~~~-~~~~~riE~R~pd~~aNPYLalaailaagL~G 381 (468)
T 1f52_A 325 GYEAP--VMLAYSARNRSASIRIPVVA-SPKARRIEVRFPDPAANPYLCFAALLMAGLDG 381 (468)
T ss_dssp CSSCC--CEEEEESSCTTEEEECCCCS-CGGGCCEEECCCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcCc--CcceeccCCcccceeeCCCC-CCCCCEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999 89999999999999999742 22357999999999999999999999999999
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=1.8e-77 Score=597.36 Aligned_cols=306 Identities=15% Similarity=0.153 Sum_probs=258.7
Q ss_pred CCEEEEEEEEEcCCCCcceeeEEeCCCCCCCCCCCCcccccCCC-c-ccC-cCCCccEEEEee--eeeecCC-CCCCeEE
Q 018434 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSS-T-GQA-PGEDSEVILYPQ--AIFKDPF-RRGNNIL 89 (356)
Q Consensus 16 ~~v~~v~~~~~D~~G~~~Rgk~~~~~~~~~~~~~~~~~~~d~~~-~-g~~-~~~~~D~~l~PD--t~~~~Pw-~~~~~a~ 89 (356)
.+|++|+++|+|++| ++|||++|++.+ +.+. .+++|+|++ + ++. .+.++|++|+|| |++++|| .++ +++
T Consensus 12 ~~i~~v~~~~~D~~G-~~r~k~ip~~~~-~~~~--~g~~~~gs~~~~~~~~~~~~sD~~l~PD~~T~~~~Pw~~~~-~a~ 86 (421)
T 2j9i_A 12 HAAAFVRFEATDAAG-ASRSKSIPAQFF-EKVI--HARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAAAAA-TAA 86 (421)
T ss_dssp TTCSEEEEEEECSSS-CEEEEEEEGGGC-CTTH--HHHCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTSSSS-EEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEEHHHH-HHhh--cCCeeecccCcccccccCCCCCEEEEEecCceEEcCcCCCC-eEE
Confidence 389999999999999 999999999877 4333 257888874 3 443 445699999999 7999999 664 999
Q ss_pred EEEEEecCCCCcCCCCHHHHHHHHHHhhhhcCC--cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhh
Q 018434 90 VMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAW 167 (356)
Q Consensus 90 v~~d~~~~~G~p~~~~PR~~Lkr~l~~~~~~G~--~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (356)
|+|| ||+|++.|||++|||++++++++|+ ++++|+|+|||||+.+... .+ ...||...+.+.
T Consensus 87 v~cd----dG~P~~~~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~~-~~---------~p~y~~~~~~~~-- 150 (421)
T 2j9i_A 87 VICD----GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEVI-NS---------KTISFPASTTAA-- 150 (421)
T ss_dssp EEEE----EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEEE-EC---------SSCEEEECCCTT--
T ss_pred EEcC----CCCCCCCChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCCC-CC---------CCCcCCCCcccc--
Confidence 9999 7999999999999999999999999 9999999999999875410 00 112444333332
Q ss_pred HHHHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCCh-hhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCc
Q 018434 168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAV-GISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGA 246 (356)
Q Consensus 168 ~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~Gs 246 (356)
..+++++|+++|+ +||+|+++|+|+|||||||++.|.+ ++++||++++||++||+||++||++||||||| + .+||
T Consensus 151 ~~~~~~~i~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~atFmpKP--~-~~GS 226 (421)
T 2j9i_A 151 AADQPQEAAAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAA--A-AAAA 226 (421)
T ss_dssp CTTGGGSCCTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCTTS--S-TTSC
T ss_pred hhHHHHHHHHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCc--C-CCCC
Confidence 2466788999999 9999999999999999999999999 99999999999999999999999999999999 4 7999
Q ss_pred eeeecccCcccC--C------CC--ch-HHHHHHHHHHHHHHHHhcccccc---cccccCCCCCCCCCCCce---eeccC
Q 018434 247 GAHANYSTKSMR--N------DG--GF-EVIKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINTF---KWGVA 309 (356)
Q Consensus 247 G~H~H~Sl~~~~--~------~~--~~-~~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a~~~~~~---~WG~~ 309 (356)
|+ +|+|||+.+ + ++ ++ ...++||+|| |+|++++++|++ |||||. .|+| .++ +||.+
T Consensus 227 G~-~h~Sl~~~~~~G~nlf~~~~~~~ls~~~~~~iaGi-l~h~~~l~a~~~p~~NSYk~~---~~ap--~~~~~~~wG~~ 299 (421)
T 2j9i_A 227 GA-GSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGL-LAAAAAAAAAAAAAAAAAAAA---AAGA--AAAAATAWGAA 299 (421)
T ss_dssp CC-BCCEEECEEETTEESSCSSSGGGCCHHHHHHHHHH-HHHHHHHHHHHTCSHHHHHHT---SSST--TCCCEEEEESS
T ss_pred ce-EEEeccccCCCCceeecCCCCccccHHHHHHHHHH-HHHHHHHHHHhCCCccccCCC---CCCC--cCeeeeeeecC
Confidence 99 999999731 1 11 33 4569999999 999999999985 999965 4565 566 99999
Q ss_pred CCcceeeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018434 310 NRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (356)
Q Consensus 310 NRs~~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~G 354 (356)
||+++||||.. ..+.++|||+|+||++|||||++||+|+|||+|
T Consensus 300 NRsa~iRip~~-~~~~~~riE~R~pd~~aNPYLa~aailaagl~G 343 (421)
T 2j9i_A 300 AAACALNIAAA-AAAKGAQIENKAGAAAANPYLVLAATVAAGLDG 343 (421)
T ss_dssp CTTEEEEEECC-SSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHH
T ss_pred CCccceeeccc-CCCCCCEEEEcCCCCCCChHHHHHHHHHHHhhh
Confidence 99999999975 122457999999999999999999999999999
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=1.5e-58 Score=476.61 Aligned_cols=280 Identities=19% Similarity=0.221 Sum_probs=210.0
Q ss_pred ccCCCc---ccCcCCCccEEEEee--e-eeecCCCCCCeEEEEEEEecCCCC------cCCCCHHHHHHHHHHhhhhcCC
Q 018434 55 YDGSST---GQAPGEDSEVILYPQ--A-IFKDPFRRGNNILVMCDAYTPAGE------PIPTNKRHAAAKIFSHSDVVAE 122 (356)
Q Consensus 55 ~d~~~~---g~~~~~~~D~~l~PD--t-~~~~Pw~~~~~a~v~~d~~~~~G~------p~~~~PR~~Lkr~l~~~~~~G~ 122 (356)
.||||+ |+....++++++.|| + .++.| + |..|.|.+++.+|+ |+..|||+++|++++.+++.|.
T Consensus 128 ~DgSS~p~gG~r~t~earg~~~~D~ts~afi~~---~-TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G~ 203 (729)
T 3o6x_A 128 PDASSFPNGGIRNTFEARGYTAWDGSSPAFVVD---T-TLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFDK 203 (729)
T ss_dssp --------------------CCBCSSSCCEEET---T-EEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CccccCCCccchhhhhccCceecCCCCCeEEeC---C-eEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcCC
Confidence 589988 676678999999999 3 67887 3 89999999987785 5888999999999999999997
Q ss_pred -----cceEeeeeeEEEeccCCC--CCC----CCCCCCCCCCCC-----CCccccCcchhhHHHHHHHHHHHHHHcCceE
Q 018434 123 -----EPWYGIEQEYTLLQKDVK--WPL----GWPIGGYPGPQG-----PYYCGVGADKAWGRDIVDSHYKACLYAGINI 186 (356)
Q Consensus 123 -----~~~~g~E~EF~l~~~~~~--~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v 186 (356)
++.+|+|+|||||++... .+. |+..-+....++ +||...+ +. ..+++++|.+.|+++||+|
T Consensus 204 d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~kgq~l~d~Yf~~~p-d~--~~~~~~di~~~L~~~GI~v 280 (729)
T 3o6x_A 204 NITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIP-PR--VTAFMKELEIECHKLGIPV 280 (729)
T ss_dssp CCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC--------------CC-HH--HHHHHHHHHHHHHHHTCCE
T ss_pred CCccceEEEEeccEEEEEecchhccCcccccccccccCCCCCCCCCCCCccCCCCc-hh--HHHHHHHHHHHHHHCCCCe
Confidence 699999999999987421 010 110001111233 5665554 22 4789999999999999999
Q ss_pred eeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeecccCcccCC------C
Q 018434 187 SGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRN------D 260 (356)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~Sl~~~~~------~ 260 (356)
++.|+|+|||||||++.|.+++++||+++++|++||+||++||+.|||||||+.| .+|||+|+|+|||+.++ +
T Consensus 281 e~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~g-~nGSG~HvH~SL~~~~G~NLF~~~ 359 (729)
T 3o6x_A 281 KTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNG-VNGSGKHNNWSLCTDTGINLFAPG 359 (729)
T ss_dssp EEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSSTT-SCCCBEEEEEEEEETTCCCSSCCC
T ss_pred EEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC-CCCCcceeeccccCCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999995 89999999999997521 1
Q ss_pred ---Cc---hH-HHHHHHHHHHHHHHHhcccccc---cccccCCCCCCCCCCCc----------------ee---------
Q 018434 261 ---GG---FE-VIKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINT----------------FK--------- 305 (356)
Q Consensus 261 ---~~---~~-~~~~~iaGl~l~h~~al~a~~~---nsYkRl~~~~~a~~~~~----------------~~--------- 305 (356)
.+ ++ .+++||+|| |+|+++|+||++ ||| || +++||| ++ +.
T Consensus 360 d~~~~~~~~s~~~~~fIaGV-LkHa~aL~A~~aPt~NSY-RL-~g~EAP--~~iisi~lG~~l~~vl~~i~~~~~g~~~~ 434 (729)
T 3o6x_A 360 KNPKGNMLFLTFLVNVLMMV-HKNQDLLRASIMSAGNSH-RL-GANEAP--PAILSIFLGSQLSATLDEIVRQVTNSKMT 434 (729)
T ss_dssp SSTTTCHHHHHHHHHHHHHH-HHTHHHHHHHSCCHHHHT-TS-SSSSCC--CSCCCEECCHHHHHHHHCC----------
T ss_pred CCccchhhHHHHHHHHHHHH-HHhHHHHHHHhCCCcccc-cc-CCCcCC--chhhhhhhhHHHHHHHHHHHhhccCCCCC
Confidence 11 12 348999999 999999999986 999 99 999999 44 22
Q ss_pred --------ec------------cCCCcceeeeccCCCCCCccEEEecCCCCCCC---HHHHHHHHHHHhhcC
Q 018434 306 --------WG------------VANRGASIRVGRDTEKEGKGYFEDRRPASNMD---PYVVTSMIAETTILW 354 (356)
Q Consensus 306 --------WG------------~~NRs~~iRvp~~~~~~~~~riE~R~~da~aN---PYLalAailaAgl~G 354 (356)
|| .+|||+++|+.+ .|||+|.+|+++| |||++++++|+||+|
T Consensus 435 ~~~~~~~~~Gv~~lP~~~~d~~drNRTspfaftG-------nrfEfR~~Gss~n~a~P~l~lnaivA~~L~g 499 (729)
T 3o6x_A 435 PEEKTTLKLGIGRIPEILLDTTDRNRTSPFAFTG-------NRFEFRAAGSSANCAAAMIAINAAMANQLNE 499 (729)
T ss_dssp -----------------------CCCSSSSCBCS-------SSEEETTSBSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcccCCCCccCcCccccCCCccccC-------CeeEEecCCcccchhhHHHHHHHHHHHHHHH
Confidence 44 499999999874 4899999999999 999999999999987
No 11
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=98.25 E-value=1.5e-05 Score=77.74 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=81.5
Q ss_pred cceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceE--eeecCCcCCCcEEE
Q 018434 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINI--SGINGEVMPGQWEF 200 (356)
Q Consensus 123 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v--e~~h~E~gpGQ~Ei 200 (356)
...+|+|.||.+++.++. .+. ++ . .++++. .+=.+ ..+..|..-+|.|+
T Consensus 11 ~~~~GiE~E~~~Vd~~~g---------~~~---~~------~----~~~l~~-------~~~~~~~~~it~E~~~~qlEl 61 (372)
T 1r8g_A 11 PFTLGIELEMQVVNPPGY---------DLS---QD------S----SMLIDA-------VKNKITAGEVKHDITESMLEL 61 (372)
T ss_dssp TTCEEEEEEEEEEETTTT---------EEC---SC------C----HHHHTT-------TSSSCSSSEEEECSSSSEEEE
T ss_pred CCceEEEEEEeeECCCCC---------CcC---cc------H----HHHHHh-------chhcccCCcccchhhccEEEe
Confidence 468999999999998642 111 11 0 122222 22111 35778999999999
Q ss_pred EcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceE---Eecc-----------ccc------------CCCCCCceeeeccc
Q 018434 201 QVGPA-VGISAGDQLWVARYILERITEIAGVVL---SFDP-----------KPI------------QGDWNGAGAHANYS 253 (356)
Q Consensus 201 ~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A---TFmp-----------KP~------------~g~~~GsG~H~H~S 253 (356)
+..|. +.-++.+.+-..+..++++|.++|... .+.| ||. . ...=+|+|+|+|
T Consensus 62 ~t~p~~~~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g~~~~-~~~i~g~hvhv~ 140 (372)
T 1r8g_A 62 ATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQ-QATVFGQHVHVG 140 (372)
T ss_dssp ECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGC-SCCBCEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHHHHHH-hhceeeEEEEeC
Confidence 99996 677799999999999999999988765 2333 321 1 123389999999
Q ss_pred CcccCCCCchHHHHHHHHHHHHHHHHhccccccc
Q 018434 254 TKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEG 287 (356)
Q Consensus 254 l~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~n 287 (356)
+-+. ..+-..+--+ +.+.|.++|+..|
T Consensus 141 ~~~~------~~~~~~~~~~-~~~~p~l~aL~an 167 (372)
T 1r8g_A 141 CASG------DDAIYLLHGL-SRFVPHFIALSAA 167 (372)
T ss_dssp CSSH------HHHHHHHHHH-HTTHHHHHHHHCC
T ss_pred CCCH------HHHHHHHHHH-HHHHHHHHHHHhC
Confidence 9652 1121222233 5666776666543
No 12
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=97.95 E-value=6.1e-05 Score=75.31 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCce
Q 018434 106 KRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGIN 185 (356)
Q Consensus 106 PR~~Lkr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ 185 (356)
.+..|.+.+++-...+-...+|+|.||++++.++. .+. ++ . ...++++.+.+ ..|..
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~---------~~~---~~-~-------~~~~lL~~l~~---~~g~~ 73 (449)
T 2gwd_A 17 TREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTL---------RPM---KY-D-------QIAELLNSIAE---RFEWE 73 (449)
T ss_dssp CHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTC---------CBC---CH-H-------HHHHHHHHHHH---HHTCE
T ss_pred CHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCC---------CCC---Ch-H-------HHHHHHHHHHH---hhccC
Confidence 34455555553322345679999999999998642 111 11 0 12455554432 23321
Q ss_pred -------E-------eeecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHHHHcCceE---Ee-----------cc
Q 018434 186 -------I-------SGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERITEIAGVVL---SF-----------DP 236 (356)
Q Consensus 186 -------v-------e~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~Gl~A---TF-----------mp 236 (356)
+ ..+..|.+ +|+|++..|. +.-++.+++...+..++++|+++|+.. .+ +|
T Consensus 74 ~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~~ 152 (449)
T 2gwd_A 74 KVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMP 152 (449)
T ss_dssp EEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCS
T ss_pred ccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCCC
Confidence 1 12666776 9999999996 567799999999999999999999764 12 33
Q ss_pred ccc----------CCCCC-------CceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcccccccc
Q 018434 237 KPI----------QGDWN-------GAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGN 288 (356)
Q Consensus 237 KP~----------~g~~~-------GsG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~a~~~ns 288 (356)
||. .| .. -+|+|+|+++.+. ..+...+-.+ +...|.++|++.||
T Consensus 153 ~~RY~~m~~~~~~~g-~~g~~mm~~~~g~qVhl~~~~~------~~~~~~~~~~-~~~~P~llALsAnS 213 (449)
T 2gwd_A 153 KGRYDIMRNYMPKVG-SLGLDMMLRTCTVQVNLDFSSE------ADMIRKFRAG-LALQPIATALFANS 213 (449)
T ss_dssp CHHHHHHHHHGGGTC-SSHHHHHHHBCEEEEEECCSSH------HHHHHHHHHH-HHHHHHHHHHHCCB
T ss_pred chHHHHHHHHHHHhc-hhHHHHhhcceeeEEEecCCCH------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 331 12 22 4789999998652 1222223333 66777777765443
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=88.97 E-value=1.1 Score=47.40 Aligned_cols=38 Identities=18% Similarity=-0.062 Sum_probs=28.4
Q ss_pred eecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHH
Q 018434 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERIT 225 (356)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA 225 (356)
.+.+|....|.|+...++ +.-++-+.+...+.++.+.+
T Consensus 54 ~i~~d~~es~lE~~Tpv~~~~~~~~~~L~~l~~~~~~~~ 92 (750)
T 3ln6_A 54 YIQTDYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSI 92 (750)
T ss_dssp SEEESSBSSEEEEECCCBSSHHHHHHHHHHHHHHHHHHS
T ss_pred CccchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456688888888888885 56667777777777777765
No 14
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=83.58 E-value=3.6 Score=43.41 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=27.1
Q ss_pred eecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHH
Q 018434 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERIT 225 (356)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA 225 (356)
.+.+|..-.|.|+...++ +.-++-+.+-..+.++.+.+
T Consensus 53 ~i~td~ses~lE~iTpv~~~~~~~~~~L~~l~~~~~~~~ 91 (757)
T 3ln7_A 53 YIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSL 91 (757)
T ss_dssp SEECSSSTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888875 56667777777777766664
No 15
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=79.92 E-value=5.2 Score=32.75 Aligned_cols=90 Identities=12% Similarity=0.010 Sum_probs=59.4
Q ss_pred HHHHHhhhhcCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHcCceEeeec
Q 018434 111 AKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190 (356)
Q Consensus 111 kr~l~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h 190 (356)
+++++.|++.|-.+..-.++||++.-++.. . ...+.. .+.+.|..|+...
T Consensus 22 ~~Vl~~L~e~Gddl~~~r~IEH~~~F~de~-------------------------~-~e~~a~----~~~~~Gy~v~~~~ 71 (132)
T 1nxi_A 22 RDIIQALLEDGSDPDALYEIEHHLFAEDFD-------------------------K-LEKAAV----EAFKMGFEVLEAE 71 (132)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEEEEEESCHH-------------------------H-HHHHHH----HHHHHTCCCBCCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEEEEeCCHH-------------------------H-HHHHHH----HHHHCCCEEEecc
Confidence 467777788899999999999998854321 1 223333 4577898887433
Q ss_pred C---CcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCce
Q 018434 191 G---EVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVV 231 (356)
Q Consensus 191 ~---E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ 231 (356)
. |.|-.+|++.+.....+...+=.-....+. ++|+++|-.
T Consensus 72 ~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~-~lA~~~~G~ 114 (132)
T 1nxi_A 72 ETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLV-NLAEKFDII 114 (132)
T ss_dssp CBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHH-HHHHHHTCE
T ss_pred cccCCCCceeEEEEEEEeccCCHHHHHHHHHHHH-HHHHHhCcE
Confidence 2 444357999999888887665444444444 478777754
No 16
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=72.98 E-value=34 Score=32.04 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=76.2
Q ss_pred HHHcC-ceEeeecCCcC----CCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCCceeeeccc
Q 018434 179 CLYAG-INISGINGEVM----PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYS 253 (356)
Q Consensus 179 l~~~G-i~ve~~h~E~g----pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~GsG~H~H~S 253 (356)
+.+|| |++..+..-.+ |.+.-|+|.|.+++.-+|-+-.+ ..+|++-.+.||.+ | ||- +.|.|+|+-+-
T Consensus 111 ~aq~~~lE~H~w~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA-~~~r~~L~~lGL~~-f-~KT----SGgkGlHV~vP 183 (309)
T 2fao_A 111 AVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEAT-QLSLTLLDELGLRA-F-LKT----SGGKGMHLLVP 183 (309)
T ss_dssp HHHTTEEEEEECSSCTTCTTSCSEEEEEEEECTTSCHHHHHHHH-HHHHHHHHHHTCCC-E-EEE----CSSSSEEEEEE
T ss_pred HHHhCcEEeeCCcccCCCCCCCCEEEEECCCCcCCCHHHHHHHH-HHHHHHHHHcCCce-e-eEc----cCCCeeEEEEE
Confidence 55676 77766654443 89999999999888776654444 55999999999963 3 662 34689999999
Q ss_pred CcccCCCCchHHHHHHHHHHHHHHHHhcc--cccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 254 TKSMRNDGGFEVIKKAIEKLGLRHSEHIA--AYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 254 l~~~~~~~~~~~~~~~iaGl~l~h~~al~--a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
|... -.....+.|--.+ -+++.... .++...-|....+ -.++.|-.|+|...+--|-
T Consensus 184 l~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~g-----kIfiDy~qN~~g~T~vapY 242 (309)
T 2fao_A 184 LERR---HGWDEVKDFAQAI-SQHLARLMPERFSAVSGPRNRVG-----KIFVDYLRNSRGASTVAAY 242 (309)
T ss_dssp CCSC---SCHHHHHHHHHHH-HHHHHHHCTTTEECSCSGGGSTT-----SEEEECGGGSTTCCEECTT
T ss_pred cCCC---CCHHHHHHHHHHH-HHHHHHhCcceeehhhhHhhCCC-----CEEEeCccCCCCCeEEccC
Confidence 8642 1233445554444 23333222 1332333333222 1567777777666665553
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=72.79 E-value=2.7 Score=31.15 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEeccc
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK 237 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpK 237 (356)
-++.++...+.+.|++|..++.....|.|.+.+.-.-. -.+++-.++..+++++.++|+..++.+.
T Consensus 17 Gila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~~~l~~l~~~L~~~~~~~~~~~~~~~~ 82 (91)
T 1zpv_A 17 GIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EKQDFTYLRNEFEAFGQTLNVKINIQSA 82 (91)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SCCCHHHHHHHHHHHHHHHTEEEEEEEG
T ss_pred CHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHcCCEEEEeeH
Confidence 35667777788899999998877666877776654210 1124456778889999999999988654
No 18
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=66.12 E-value=14 Score=37.10 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.4
Q ss_pred CcceEeeeeeEEEeccCC
Q 018434 122 EEPWYGIEQEYTLLQKDV 139 (356)
Q Consensus 122 ~~~~~g~E~EF~l~~~~~ 139 (356)
..+.+|+|-|+..++++.
T Consensus 20 ~~~~~GIE~E~lrVd~~G 37 (518)
T 1va6_A 20 KGIQRGLERETLRVNADG 37 (518)
T ss_dssp TTCEEEEEEEEEEECTTS
T ss_pred hcCCcceEeeeeEECCCC
Confidence 457899999999999874
No 19
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=57.79 E-value=17 Score=36.51 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=29.2
Q ss_pred eecCCcCCCcEEEEcCCC-hhhHHHHHHHHHHHHHHHHH-HHcCceEEecc
Q 018434 188 GINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILERIT-EIAGVVLSFDP 236 (356)
Q Consensus 188 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA-~~~Gl~ATFmp 236 (356)
.+.+|..-.|.|+...+. +.-++-+.+-..+.++.+.+ ....+-+.=||
T Consensus 67 ~IttDfsEsqlE~iTp~~~s~~ea~~~L~~l~~~v~~~l~~~E~LWp~SmP 117 (525)
T 3nzt_A 67 SITVDFSENLLELITKPHDSIDKAIGELYQLSAFTLDNMHSDEIILNTSMP 117 (525)
T ss_dssp SEEESSBTTEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSC
T ss_pred CCCchhhhhHhhhcCCCCCCHHHHHHHHHHHHHHHHHhhCCCCeEEeecCC
Confidence 344566667777777774 45556666666666666654 44455544464
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=51.21 E-value=14 Score=31.52 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCceEeeecCCc--------CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecc-cccC
Q 018434 170 DIVDSHYKACLYAGINISGINGEV--------MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDP-KPIQ 240 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~--------gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmp-KP~~ 240 (356)
.++.++.+.|.+.|++|+.+..-. +.+.|-+.+.-.-+ ... +.-.+|..+.++|.+.|+...|.+ +.+.
T Consensus 105 Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 182 (192)
T 1u8s_A 105 GLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGC-NLMQLQEEFDALCTALDVQGSLNFIKNSQ 182 (192)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTS-CHHHHHHHHHHHHHHHTCEEEEEEEEC--
T ss_pred cHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCC-CHHHHHHHHHHHHHHhCceEEEEEccccC
Confidence 577888888999999998766543 45566665553211 111 345688889999999999999988 4333
Q ss_pred CCCCCceeeec
Q 018434 241 GDWNGAGAHAN 251 (356)
Q Consensus 241 g~~~GsG~H~H 251 (356)
-.++|-|
T Consensus 183 ----~~~~~~~ 189 (192)
T 1u8s_A 183 ----EGGSHHH 189 (192)
T ss_dssp -----------
T ss_pred ----CCCcccc
Confidence 3455544
No 21
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=50.81 E-value=47 Score=26.86 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCceEee--------ecCCc---CCCcEEEEcCCChhhH--------HHHHHHHHHHHHHHHHHHc
Q 018434 168 GRDIVDSHYKACLYAGINISG--------INGEV---MPGQWEFQVGPAVGIS--------AGDQLWVARYILERITEIA 228 (356)
Q Consensus 168 ~~~~~~~i~~~l~~~Gi~ve~--------~h~E~---gpGQ~Ei~l~~~~~l~--------aaD~~~~~k~~ik~vA~~~ 228 (356)
-.+++.+|+++|+++||+.++ .|... ..=||||.+--.+.+. ..-+.+.||.++.+|..+.
T Consensus 39 P~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eL 118 (126)
T 1v5s_A 39 SGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANEL 118 (126)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHH
Confidence 368999999999999998886 12111 1238999876443211 1225689999999999988
Q ss_pred Cc
Q 018434 229 GV 230 (356)
Q Consensus 229 Gl 230 (356)
.+
T Consensus 119 kL 120 (126)
T 1v5s_A 119 KL 120 (126)
T ss_dssp TC
T ss_pred hc
Confidence 75
No 22
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=47.88 E-value=23 Score=28.22 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHcCceEeeecC-------C----cCCCcEEEEcCCChhh--------HHHHHHHHHHHHHHHHHHHc
Q 018434 168 GRDIVDSHYKACLYAGINISGING-------E----VMPGQWEFQVGPAVGI--------SAGDQLWVARYILERITEIA 228 (356)
Q Consensus 168 ~~~~~~~i~~~l~~~Gi~ve~~h~-------E----~gpGQ~Ei~l~~~~~l--------~aaD~~~~~k~~ik~vA~~~ 228 (356)
-.+++.+|.++|.++||..+.-.. + .+.-|||+.+--.+.+ +..=+.+.||.++.+|..+.
T Consensus 39 P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L 118 (120)
T 3ose_A 39 PNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 379999999999999998887431 1 1235788875443311 12225678999999998876
Q ss_pred Cc
Q 018434 229 GV 230 (356)
Q Consensus 229 Gl 230 (356)
.|
T Consensus 119 ~L 120 (120)
T 3ose_A 119 KL 120 (120)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 23
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=43.58 E-value=72 Score=29.68 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=75.6
Q ss_pred HHHcC-ceEeeecCCc-C-----------CCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccCCCCCC
Q 018434 179 CLYAG-INISGINGEV-M-----------PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNG 245 (356)
Q Consensus 179 l~~~G-i~ve~~h~E~-g-----------pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~g~~~G 245 (356)
+.+|| |++.-+..-. + |.+.-|+|.|.+++.-+|- +.+=..+|++..+.||.+ | ||- +.|
T Consensus 105 ~aq~g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~~~~~f~~v-~~aA~~~r~~L~~lGL~~-f-~KT----SGg 177 (303)
T 2iru_A 105 IAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQL-AEVARAVRDLLADIGLVT-F-PVT----SGS 177 (303)
T ss_dssp HHHTTCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHHH-HHHHHHHHHHHHTTTCCC-E-EEE----CSS
T ss_pred HHHhCcEeeeCCccccccccccccCCCCCCCEEEEECCCCCCCCHHHH-HHHHHHHHHHHHHcCCcc-c-eEc----cCC
Confidence 45566 6666554333 2 7788899999988776664 444466999999999984 3 773 347
Q ss_pred ceeeecccCcccCCCCchHHHHHHHHHHHHHHHHhcc--cccccccccCCCCCCCCCCCceeeccCCCcceeeecc
Q 018434 246 AGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIA--AYGEGNERRLTGKHETADINTFKWGVANRGASIRVGR 319 (356)
Q Consensus 246 sG~H~H~Sl~~~~~~~~~~~~~~~iaGl~l~h~~al~--a~~~nsYkRl~~~~~a~~~~~~~WG~~NRs~~iRvp~ 319 (356)
.|+|+-+-|.... .....+.|--.+ -+++.... .++...-|....+ -.++.|-.|+|...+=-|-
T Consensus 178 kGlHV~vPl~~~~---~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~g-----kIfvDy~qN~~g~T~vapY 244 (303)
T 2iru_A 178 KGLHLYTPLDEPV---SSRGATVLAKRV-AQRLEQAMPALVTSTMTKSLRAG-----KVFVDWSQNSGSKTTIAPY 244 (303)
T ss_dssp SCEEEEEEEEEEE---CHHHHHHHHHHH-HHHHHHHCTTTEESSCCGGGCTT-----SEEEECGGGSTTCCEECTT
T ss_pred CeEEEEEEcCCCC---CHHHHHHHHHHH-HHHHHHHCcceehhhhhHHhCCC-----CEEEECccCCCCCeeEecC
Confidence 8999999885421 133344444444 23333222 1333333333332 1677888777777665553
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=39.09 E-value=1.5e+02 Score=24.77 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCceEeeecCCcCCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccc
Q 018434 170 DIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKP 238 (356)
Q Consensus 170 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP 238 (356)
-++.++...|.+.|++|.....-.-.|+|=+.+.-..+. +..-.++..+.+++.+.|+...+-+.+
T Consensus 18 Giva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 18 GICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456777778899999998876655567777655443222 355667888889999999998876543
No 25
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=39.01 E-value=31 Score=29.48 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCceEeeecCCc------CCCcEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccc
Q 018434 169 RDIVDSHYKACLYAGINISGINGEV------MPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKP 238 (356)
Q Consensus 169 ~~~~~~i~~~l~~~Gi~ve~~h~E~------gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP 238 (356)
--++.+|...|.+.|++|..++.-. +.+.|-+.+.-.-+ ...| -.+|..+.++|.+.|+...|.|-.
T Consensus 104 pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~--~~l~~~l~~~a~~l~~di~~~~~~ 176 (195)
T 2nyi_A 104 EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY--QEVVTALSRVEEEFGVDIDLEEVV 176 (195)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH--HHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc--HHHHHHHHHHHHHcCeEEEEEECc
Confidence 3578888889999999998876643 34777666555322 1223 568888999999999999998753
No 26
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=35.40 E-value=65 Score=30.09 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCceEeeecCCcCCC--cEEEEcCCChhhHHHHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018434 172 VDSHYKACLYAGINISGINGEVMPG--QWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240 (356)
Q Consensus 172 ~~~i~~~l~~~Gi~ve~~h~E~gpG--Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~ATFmpKP~~ 240 (356)
+..+.+.+++.||.+--+.++.=|- ..|+.+.. .|.+.-.=.-|.++|+++|+..||.|-+|.
T Consensus 62 l~~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~------~~~~~~~l~~iG~~a~~~~iRLS~HPgqF~ 126 (310)
T 3tc3_A 62 LKNILEWNLKHEILFFRISSNTIPLASHPKFHVNW------KDKLSHILGDIGDFIKENSIRISMHPGQYV 126 (310)
T ss_dssp HHHHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCH------HHHTHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred HHHHHHHHHHcCCEEEEeCcccCCCccccccccch------HHHHHHHHHHHHHHHHHcCcEEEecCCCCc
Confidence 4556778899999999988887762 22322222 122222224578899999999999999987
No 27
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=27.97 E-value=46 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCcCCCCHHHHHHHHHHhhhhcCCc
Q 018434 99 GEPIPTNKRHAAAKIFSHSDVVAEE 123 (356)
Q Consensus 99 G~p~~~~PR~~Lkr~l~~~~~~G~~ 123 (356)
|.|.+.||| +...+.++.+||++
T Consensus 1 ~~p~~~D~r--l~~al~qMl~MGF~ 23 (52)
T 1q02_A 1 GSPPEADPR--LIESLSQMLSMGFS 23 (52)
T ss_dssp CCCTTSCHH--HHHHHHHHHTTTCC
T ss_pred CCCCCcChH--HHHHHHHHHHcCCC
Confidence 567888999 77888888889985
Done!