RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018434
(356 letters)
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 798 bits (2062), Expect = 0.0
Identities = 334/354 (94%), Positives = 343/354 (96%)
Query: 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
MSLLSDL+NLNLS+STDKIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60
Query: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
GQAPGEDSEVILYPQAIFKDPFR GNNILVMCDAYTPAGEPIPTNKR AAKIFSH DV
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120
Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
AEEPWYGIEQEYTLLQKDVKWPLGWP+GGYPGPQGPYYCGVGADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180
Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ 240
YAGINISGINGEVMPGQWEFQVGP VGISAGDQLWVARYILERITEIAGVV+SFDPKPI
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240
Query: 241 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 300
GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETAD 300
Query: 301 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354
INTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional.
Length = 432
Score = 669 bits (1728), Expect = 0.0
Identities = 285/353 (80%), Positives = 318/353 (90%)
Query: 4 LSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQA 63
+ DLLNL+ + TD+IIAEYIWIGGSG+D+RSK+RT+ PV PS+LPKWNYDGSSTGQA
Sbjct: 64 VEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQA 123
Query: 64 PGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE 123
PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFS+ VV E
Sbjct: 124 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEV 183
Query: 124 PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAG 183
PW+GIEQEYTLLQ++VKWPLGWP+G YPGPQGPYYCG GADK++GRDI D+HYKACLYAG
Sbjct: 184 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAG 243
Query: 184 INISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDW 243
INISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPI+GDW
Sbjct: 244 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDW 303
Query: 244 NGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINT 303
NGAG H NYSTKSMR +GGFEVIKKAI L LRH EHI+AYGEGNERRLTGKHETA I+T
Sbjct: 304 NGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDT 363
Query: 304 FKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
F WGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETTILW+P
Sbjct: 364 FSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEP 416
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 253 bits (648), Expect = 2e-83
Identities = 87/263 (33%), Positives = 126/263 (47%), Gaps = 20/263 (7%)
Query: 103 PTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVG 162
P + R + + + P++G EQE+ L DV+ G P GGYP P+GPYY G
Sbjct: 1 PRDPRSILKRALARLASLGYTPYFGPEQEFFLF-DDVRPGGGPPPGGYPDPRGPYYGGYF 59
Query: 163 ADKA--WGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYI 220
RDI KA AGI + GI+ EV PGQ E + A + A D L + +Y+
Sbjct: 60 PVAPLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDLRFADALEAADNLQLFKYV 119
Query: 221 LERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRN--------DGGFEVIKKAIEK 272
++R+ E G+ +F PKPI GD NG+G H + S ++ DG + + A
Sbjct: 120 VKRVAEKHGLTATFMPKPIFGD-NGSGMHTHQSLWDRKDGKNLFADGDGYAGLSETARHF 178
Query: 273 LG--LRHSEHIAAY---GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKG 327
+G L+H+ I AY + +RL T WGV NR ASIR+ R + G
Sbjct: 179 IGGILKHAPAITAYTAPTVNSYKRLVP--GTEAPVYIAWGVRNRSASIRIPRGGGPKA-G 235
Query: 328 YFEDRRPASNMDPYVVTSMIAET 350
EDR P + +PY+ + +
Sbjct: 236 RVEDRLPDPDANPYLALAALLAA 258
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 213 bits (544), Expect = 2e-65
Identities = 89/350 (25%), Positives = 135/350 (38%), Gaps = 23/350 (6%)
Query: 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNY--DGSSTGQAPG-EDSEVILY 73
+ + +G+ +R K PVS ++L + DGSS G +S+++L
Sbjct: 14 GVKFVDLRFTDLNGV-LRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLK 72
Query: 74 P--QAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQ 130
P + DP+R G V+CD Y P G P P + R + D G E
Sbjct: 73 PDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPEL 132
Query: 131 EYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190
E+ L +D G P +G Y+ D+A D +A AGI I I+
Sbjct: 133 EFFLFDRD-GRDPDG---GRPADKGGYFDVAPLDEA--EDFRRDIVEALEAAGIEIEAIH 186
Query: 191 GEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGD-WNGAGAH 249
EV PGQ+E + + A DQ+ + +Y+++ + E G+ +F PKP GD +G H
Sbjct: 187 HEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFGDNGSGMHVH 246
Query: 250 ANYSTKS-----MRNDGGF---EVIKKAIEKLGLRHSEHIAAYGEG-NERRLTGKHETAD 300
+ K DG E I + A N + G
Sbjct: 247 QSLWDKDGGNLFADEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVPYEWA 306
Query: 301 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 350
WGV NR AS+R+ E R P + +PY+ + I
Sbjct: 307 PTYIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAA 356
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain.
Length = 84
Score = 75.6 bits (187), Expect = 3e-17
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 17 DKIIAEYIWIGGSGM--DMRSKARTLPGPVSDPSKLPKWNYDGSST-GQAPGEDSEVILY 73
+ + G +R A L D + +DGSS G AP +S++ L
Sbjct: 1 GVKFVDLRFTDILGRLKHVRIPATELDE---DAFEEG-IGFDGSSIEGFAPINESDMYLK 56
Query: 74 P--QAIFKDPFRR--GNNILVMCDAYTP 97
P + DPFR G V+CD Y P
Sbjct: 57 PDPSTAYIDPFRPDPGKTARVICDVYDP 84
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 77.8 bits (192), Expect = 1e-15
Identities = 77/320 (24%), Positives = 128/320 (40%), Gaps = 39/320 (12%)
Query: 55 YDGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRHAA 110
+DGSS G E+S+++L P DP+R + V+CD Y P GEP + R A
Sbjct: 47 FDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVICDVYEPFTGEPYERDPRSIA 106
Query: 111 AKIFSH-SDVVAEEPWYGIEQEYTLLQKDVKWPLGW-----------------PIGGY-P 151
+ + + + ++G E E+ L L GY P
Sbjct: 107 KRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNRGYKP 166
Query: 152 GPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 211
+G Y+ D A DI G ++ + EV GQ E +
Sbjct: 167 RDKGGYFPVAPTDTA--VDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTA 224
Query: 212 DQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYS-----TKSMRNDGGFEVI 266
D + +Y+++ + G +F PKP+ GD NG+G H + S + +
Sbjct: 225 DDIQTYKYVVKNVARKHGKTATFMPKPLFGD-NGSGMHCHQSLWKDGENLFAGEEYAGLS 283
Query: 267 KKAIEKLG--LRHSEHIAAYGE---GNERRLTGKHETADINTFKWGVANRGASIRVGRDT 321
+ A+ +G L+H++ +AA+ + +RL +E A + + NR A IR+
Sbjct: 284 ETALYYIGGILKHAKALAAFTNPTVNSYKRLVPGYE-APVY-LAYSARNRSALIRIPASG 341
Query: 322 EKEGKGYFEDRRPASNMDPY 341
+ K E R P + +PY
Sbjct: 342 NPKAK-RIEFRFPDPSANPY 360
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III. This
family consists of the type III isozyme of glutamine
synthetase, originally described in Rhizobium meliloti,
where types I and II also occur.
Length = 435
Score = 45.4 bits (108), Expect = 3e-05
Identities = 72/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%)
Query: 61 GQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSD 118
GQ+P D +++ P + + P++ G V D + G+P P R + + +
Sbjct: 53 GQSP-ADPDLMAIPDLDSLTQLPWQPGVA-WVAADLH-VNGKPYPQAPRVVLKRQLAEAA 109
Query: 119 VVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPY-YCGVGADKAWGRDIVDSHYK 177
+ G+E E+ LL++D L + Y G+ +I D
Sbjct: 110 ELGLTLNTGVECEFFLLRRDEDGSLSIADRADTLAKPCYDQRGLMRRYDVLTEISD---- 165
Query: 178 ACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPK 237
A G + + E GQ+E A ++ D+ RY+++ I E G+ +F PK
Sbjct: 166 AMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPK 225
Query: 238 PIQGDWNGAGAHANYS--TKSMRN-------DGGFEVIKKAIEKLG--LRHSEHIAA--- 283
P D G G H + S + RN G + K A +G L H+ + A
Sbjct: 226 PFA-DLTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLA 284
Query: 284 -----YGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNM 338
Y N R T T N +G NR +R+ G FE R
Sbjct: 285 PTVNSYKRLNAPR-TTSGATWAPNFISYGGNNRTHMVRI------PDPGRFELRLADGAA 337
Query: 339 DPYVVTSMI 347
+PY+ + I
Sbjct: 338 NPYLAQAAI 346
>gnl|CDD|181884 PRK09469, glnA, glutamine synthetase; Provisional.
Length = 469
Score = 34.7 bits (80), Expect = 0.073
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 44/234 (18%)
Query: 55 YDGSSTGQAPG-EDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPAG------EPIPTN 105
+DGSS G G +S+++L P A DPF + +++ CD P +P
Sbjct: 50 FDGSSIGGWKGINESDMVLMPDASTAVLDPFFEDSTLIIRCDILEPGTMQGYDRDPRSIA 109
Query: 106 KRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ-----------------KDVKWPLGWPI- 147
KR A+ + S +A+ +G E E+ L + W G
Sbjct: 110 KR---AEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAAWNSGTKYE 166
Query: 148 ----GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLY---AGINISGINGEV-MPGQWE 199
G PG +G Y+ D + +DI + CL G+ + + EV GQ E
Sbjct: 167 GGNKGHRPGVKGGYFPVPPVDSS--QDIRSA---MCLVMEEMGLVVEAHHHEVATAGQNE 221
Query: 200 FQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYS 253
D++ + +Y++ + G +F PKP+ GD NG+G H + S
Sbjct: 222 VATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATFMPKPMFGD-NGSGMHCHMS 274
>gnl|CDD|201802 pfam01451, LMWPc, Low molecular weight phosphotyrosine protein
phosphatase.
Length = 138
Score = 29.2 bits (66), Expect = 1.7
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 72 LYPQAIFKDPFRRGNNILVMCDAYTPAGEPI-PTNKRHAAAKIFSHSDVVAEEPWYGIEQ 130
+ + ++ + + IL M + PI P +R + H D+ +P+ G
Sbjct: 64 HRARQLTEELLKSFDLILTMDGEHIRDICPIAPGGRRAKVMLLGHHWDI--PDPYGGSID 121
Query: 131 EY 132
+
Sbjct: 122 AF 123
>gnl|CDD|233049 TIGR00608, radc, DNA repair protein radc. The genes in this family
for which the functions are known have an as yet porrly
defined role in determining sensitivity to DNA damaging
agents such as UV irradiation. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 218
Score = 29.3 bits (66), Expect = 2.2
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 62 QAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTN 105
G + V ++P+ IFK+ + + L++ + P+GEP P+
Sbjct: 136 VFIGTVNHVPVHPREIFKEALKLSASALILAHNH-PSGEPSPSQ 178
>gnl|CDD|219567 pfam07775, PaRep2b, PaRep2b protein. This is a family of proteins,
expressed in the crenarchaeon Pyrobaculum aerophilum,
whose members are variable in length and level of
conservation. The presence of numerous frameshifts and
internal stop codons in multiple alignments are thought
to indicate that most family members are no longer
functional.
Length = 510
Score = 28.7 bits (64), Expect = 5.0
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 264 EVIKKAIEKL-GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTE 322
E KA+E L GL+ EH A YG+ E R+ H+ A +N K A + G+
Sbjct: 257 EAYAKAVEALSGLKEGEHYAVYGKRREIRVKAPHKDAVVNALK------AAGLEEGKHFA 310
Query: 323 KEGKGYFEDR 332
+ GY+ R
Sbjct: 311 VKWSGYYVIR 320
>gnl|CDD|222587 pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid
hydrolase. This family of enzymes catalyzes the
conversion of L-2-amino-delta2-thiazoline-4-carboxylic
acid (L-ATC) to N-carbamoyl-L-cysteine. It cleaves the
carbon-sulphur bond in the ring structure of L-ATC to
produce N-carbamoyl-L-cysteine.
Length = 149
Score = 27.3 bits (61), Expect = 8.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 259 NDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRL 292
+ +I++AIE G + AA G L
Sbjct: 28 PEEAEAIIREAIEAFGEERGKAFAAKAPGKPDDL 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.429
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,637,112
Number of extensions: 1816209
Number of successful extensions: 1334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 18
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)