RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018434
         (356 letters)



>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
           domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 374

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 16/218 (7%)

Query: 142 PLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINI-SGINGEVMPGQWEF 200
             G P  GY       Y  V  +  +  D+ D      + +G  +  G +     GQ E 
Sbjct: 66  ADGSPNRGYKVRHKGGYFPVAPNDQY-VDLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 124

Query: 201 QVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH--------ANY 252
                  + A D + + +YI++      G  ++F PKP+ GD               A  
Sbjct: 125 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPL 184

Query: 253 STKSMRNDGGFEVIKKAIEKLGLRHSEHIAA---YGEGNERRLTGKHETADINTFKWGVA 309
                   G  +  +  I  L L H+  + A       + +RL      A IN   +   
Sbjct: 185 MYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVP-GYEAPINL-VYSQR 241

Query: 310 NRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
           NR A +R+            E R P S+ +PY+  S +
Sbjct: 242 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 279


>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 16/234 (6%)

Query: 124 PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAG 183
               I+          K+  G   G  PG +G Y+     D A  +DI           G
Sbjct: 47  SHVAIDDIEGAWNSSTKYEGGNK-GHRPGVKGGYFPVPPVDSA--QDIRSEMCLVMEQMG 103

Query: 184 INISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGD 242
           + +   + EV   GQ E            D++ + +Y++  +    G   +F PKP+ GD
Sbjct: 104 LVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGD 163

Query: 243 WNGAGAHANYSTKSMRN----DGGFEVIKKAIEKLG--LRHSEHIAAYG---EGNERRLT 293
                       K+  N    D    + ++A+  +G  ++H++ I A       + +RL 
Sbjct: 164 NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLV 223

Query: 294 GKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
             +E        +   NR ASIR+      + +   E R P    +PY+  + +
Sbjct: 224 PGYEAP--VMLAYSARNRSASIRIPVVASPKAR-RIEVRFPDPAANPYLCFAAL 274


>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 100

 Score = 29.1 bits (65), Expect = 0.24
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 31  MDMRSKARTLPGPVSDPSKLPKWNYDG------SSTGQAPGEDSEVILYPQA--IFKDPF 82
            D + K + +  P        ++  +G      S  G     +S+++L P A     DPF
Sbjct: 22  TDTKGKEQHVTIPAHQV--NAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPF 79

Query: 83  RRGNNILVMCDAYTPA-GEP 101
              + +++ CD   P   + 
Sbjct: 80  FADSTLIIRCDILEPGTLQG 99


>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 230

 Score = 30.0 bits (66), Expect = 0.31
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 248 AHANYSTKSMRNDGGFEVIKKAIEKLGL 275
            +A+Y TK    +GG E I   +EK G 
Sbjct: 202 ENADYVTKKEYGEGGAEAIYHILEKFGY 229


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 27.2 bits (60), Expect = 0.96
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 31  MDMRSKARTLPGPVS----DPSKLPKWNYDGSSTGQAPGEDSEVILYPQA--IFKDPFRR 84
            D+    +    P S                S  G     +S+++L P       DPFR 
Sbjct: 22  CDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRA 81

Query: 85  GNNILVMCDAYTPA-GEP 101
              + +    + P   EP
Sbjct: 82  AKTLNINFFVHDPFTLEP 99


>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 260

 Score = 26.4 bits (57), Expect = 4.6
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 248 AHANYSTKSMRNDGGFEVIKKAIEKLGL 275
           A A+Y T  +  DG    I KA++  G+
Sbjct: 236 AAADYVTAPIDEDG----ISKAMKHFGI 259


>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab
           (Limulus polyphemus) [TaxId: 6850]}
          Length = 270

 Score = 25.9 bits (57), Expect = 7.9
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 213 QLWVARYILERITEIAGVV--LSFDPKPIQGDWNGAGAHANYSTKSMRNDG 261
           Q+  ARY  ER++     +   +   +P+ G        A+    S R DG
Sbjct: 97  QM-CARYDCERLSNGMHRMLPFNNFDEPLAGYAPHLTHVASGKYYSPRPDG 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,414,067
Number of extensions: 68962
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 8
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)