Query 018435
Match_columns 356
No_of_seqs 144 out of 1487
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2275 Aminoacylase ACY1 and 100.0 5.9E-48 1.3E-52 354.6 31.0 301 25-331 22-325 (420)
2 TIGR01880 Ac-peptdase-euk N-ac 100.0 1.8E-47 3.8E-52 370.2 35.6 298 26-329 7-305 (400)
3 PRK08588 succinyl-diaminopimel 100.0 3E-45 6.5E-50 352.1 34.7 278 28-329 2-283 (377)
4 PRK09133 hypothetical protein; 100.0 2.1E-45 4.6E-50 362.7 33.3 293 23-328 32-373 (472)
5 PRK13013 succinyl-diaminopimel 100.0 3.6E-45 7.8E-50 357.1 34.1 299 23-329 9-329 (427)
6 PRK13983 diaminopimelate amino 100.0 4.4E-44 9.5E-49 346.5 33.3 291 26-329 3-310 (400)
7 TIGR01910 DapE-ArgE acetylorni 100.0 1.5E-44 3.2E-49 347.0 28.6 281 32-328 2-291 (375)
8 PRK06915 acetylornithine deace 100.0 2.8E-44 6E-49 350.3 30.1 277 23-318 12-308 (422)
9 PRK06837 acetylornithine deace 100.0 4.1E-44 8.9E-49 349.3 29.2 280 21-318 13-313 (427)
10 PRK05111 acetylornithine deace 100.0 2.6E-43 5.6E-48 339.3 31.7 282 27-329 4-295 (383)
11 PRK06446 hypothetical protein; 100.0 2.8E-43 6.2E-48 344.2 32.1 293 28-329 2-340 (436)
12 PRK07906 hypothetical protein; 100.0 2.5E-43 5.4E-48 343.9 30.8 290 31-332 2-333 (426)
13 PRK08201 hypothetical protein; 100.0 2.7E-43 5.8E-48 346.4 31.1 301 23-329 9-360 (456)
14 PRK08596 acetylornithine deace 100.0 2.8E-43 6.1E-48 342.8 30.5 277 23-318 8-299 (421)
15 PRK07522 acetylornithine deace 100.0 6.2E-43 1.3E-47 336.9 32.4 281 28-330 4-299 (385)
16 TIGR01892 AcOrn-deacetyl acety 100.0 1.1E-42 2.3E-47 332.7 32.4 276 32-330 1-284 (364)
17 PRK13009 succinyl-diaminopimel 100.0 2E-42 4.2E-47 332.3 33.0 279 29-329 3-285 (375)
18 PRK06133 glutamate carboxypept 100.0 1.4E-42 3E-47 336.7 32.1 277 24-330 33-314 (410)
19 TIGR01246 dapE_proteo succinyl 100.0 4.6E-42 1E-46 329.1 32.8 277 31-329 2-282 (370)
20 PRK08262 hypothetical protein; 100.0 4.4E-42 9.5E-47 340.3 32.9 293 23-329 39-387 (486)
21 PRK07907 hypothetical protein; 100.0 5E-42 1.1E-46 336.7 31.1 296 23-329 13-352 (449)
22 PRK09104 hypothetical protein; 100.0 5E-42 1.1E-46 338.0 30.9 303 21-329 10-368 (464)
23 PRK08651 succinyl-diaminopimel 100.0 1.1E-41 2.5E-46 329.1 32.6 283 25-329 3-300 (394)
24 PRK08737 acetylornithine deace 100.0 3E-41 6.5E-46 322.0 31.6 261 24-318 2-266 (364)
25 TIGR03320 ygeY M20/DapE family 100.0 2.2E-41 4.9E-46 327.0 31.0 279 23-328 8-288 (395)
26 PRK07473 carboxypeptidase; Pro 100.0 7.4E-41 1.6E-45 320.9 33.2 273 23-329 6-285 (376)
27 PRK13004 peptidase; Reviewed 100.0 4.7E-41 1E-45 325.2 31.7 280 22-328 9-290 (399)
28 PRK07338 hypothetical protein; 100.0 2.7E-41 5.8E-46 327.3 29.9 275 23-329 12-307 (402)
29 TIGR03526 selenium_YgeY putati 100.0 4.7E-41 1E-45 324.7 31.2 279 23-328 8-288 (395)
30 PRK07079 hypothetical protein; 100.0 1.7E-40 3.7E-45 327.4 33.7 296 28-330 17-364 (469)
31 TIGR01900 dapE-gram_pos succin 100.0 6.3E-40 1.4E-44 314.3 27.5 258 33-315 1-275 (373)
32 COG0624 ArgE Acetylornithine d 100.0 1.1E-38 2.3E-43 309.8 30.9 289 26-329 11-316 (409)
33 PRK00466 acetyl-lysine deacety 100.0 1.4E-38 3.1E-43 302.3 31.1 239 28-318 10-248 (346)
34 PRK13007 succinyl-diaminopimel 100.0 5.2E-38 1.1E-42 299.1 31.9 256 26-318 5-264 (352)
35 TIGR01886 dipeptidase dipeptid 100.0 1.5E-38 3.2E-43 312.7 27.8 273 23-318 8-368 (466)
36 PRK08652 acetylornithine deace 100.0 7.2E-38 1.6E-42 297.5 29.7 260 28-334 2-262 (347)
37 PRK07205 hypothetical protein; 100.0 6.5E-38 1.4E-42 307.2 30.2 279 25-327 8-352 (444)
38 PRK04443 acetyl-lysine deacety 100.0 1.1E-37 2.5E-42 296.3 30.8 262 26-334 4-265 (348)
39 PRK07318 dipeptidase PepV; Rev 100.0 5.7E-38 1.2E-42 309.2 27.7 282 23-329 9-377 (466)
40 TIGR01891 amidohydrolases amid 100.0 8.4E-38 1.8E-42 298.9 27.2 272 31-330 2-278 (363)
41 PLN02280 IAA-amino acid hydrol 100.0 3E-37 6.6E-42 302.4 29.8 271 28-329 97-373 (478)
42 PRK06156 hypothetical protein; 100.0 7.2E-37 1.6E-41 304.5 31.3 281 25-329 43-426 (520)
43 TIGR01883 PepT-like peptidase 100.0 9.2E-37 2E-41 291.5 27.9 264 29-329 1-275 (361)
44 PLN02693 IAA-amino acid hydrol 100.0 2.7E-36 5.8E-41 293.8 30.7 272 26-330 45-322 (437)
45 TIGR01902 dapE-lys-deAc N-acet 100.0 1.7E-35 3.7E-40 280.1 30.1 235 32-315 1-236 (336)
46 TIGR01887 dipeptidaselike dipe 100.0 1.7E-35 3.7E-40 289.1 30.7 269 28-317 2-354 (447)
47 PRK13381 peptidase T; Provisio 100.0 1.6E-35 3.5E-40 287.0 26.4 257 30-318 3-298 (404)
48 COG1473 AbgB Metal-dependent a 100.0 1.3E-34 2.9E-39 274.2 25.3 292 25-344 9-306 (392)
49 KOG2276 Metalloexopeptidases [ 100.0 1.5E-34 3.2E-39 263.7 24.1 315 17-338 5-388 (473)
50 TIGR01893 aa-his-dipept aminoa 100.0 2.5E-34 5.3E-39 284.0 27.9 267 27-331 3-299 (477)
51 PRK15026 aminoacyl-histidine d 100.0 5.2E-34 1.1E-38 280.3 28.9 261 27-330 9-304 (485)
52 PRK05469 peptidase T; Provisio 100.0 2.9E-34 6.3E-39 278.5 24.8 259 28-318 2-300 (408)
53 PRK12892 allantoate amidohydro 100.0 1.8E-33 4E-38 273.4 27.4 261 25-329 7-322 (412)
54 PRK12893 allantoate amidohydro 100.0 4.1E-33 8.9E-38 270.9 28.4 260 26-329 8-321 (412)
55 PRK12891 allantoate amidohydro 100.0 5E-33 1.1E-37 270.2 28.5 261 27-330 9-322 (414)
56 PRK09290 allantoate amidohydro 100.0 6.7E-33 1.5E-37 269.4 28.3 263 25-330 4-323 (413)
57 PRK08554 peptidase; Reviewed 100.0 7E-33 1.5E-37 270.2 27.7 284 29-330 2-349 (438)
58 TIGR01882 peptidase-T peptidas 100.0 8.9E-33 1.9E-37 268.0 22.5 255 28-318 3-302 (410)
59 PRK12890 allantoate amidohydro 100.0 1E-31 2.2E-36 261.2 27.4 261 27-330 8-324 (414)
60 TIGR03176 AllC allantoate amid 100.0 1.1E-31 2.4E-36 259.7 25.2 260 28-330 3-316 (406)
61 TIGR01879 hydantase amidase, h 100.0 6.9E-31 1.5E-35 254.2 25.6 257 30-329 3-314 (401)
62 PRK13590 putative bifunctional 100.0 1.2E-29 2.5E-34 255.6 27.9 270 20-333 173-502 (591)
63 PRK13799 unknown domain/N-carb 100.0 1.4E-28 3.1E-33 247.5 25.8 271 20-331 173-502 (591)
64 COG4187 RocB Arginine degradat 99.8 1.3E-19 2.8E-24 167.7 15.7 273 27-314 7-319 (553)
65 PRK10199 alkaline phosphatase 99.8 5.7E-18 1.2E-22 157.3 17.8 123 45-179 50-188 (346)
66 PF01546 Peptidase_M20: Peptid 99.8 6.2E-19 1.3E-23 152.8 9.3 85 94-180 1-85 (189)
67 TIGR03106 trio_M42_hydro hydro 99.7 1.1E-15 2.5E-20 143.8 16.3 135 27-169 2-221 (343)
68 COG2195 PepD Di- and tripeptid 99.6 4.6E-14 1E-18 134.5 14.7 287 26-341 3-336 (414)
69 COG1363 FrvX Cellulase M and r 99.6 7.4E-14 1.6E-18 130.2 15.3 152 28-195 2-238 (355)
70 PF07687 M20_dimer: Peptidase 99.6 1.8E-14 4E-19 113.9 9.6 104 206-318 1-105 (111)
71 TIGR03107 glu_aminopep glutamy 99.5 1.1E-13 2.3E-18 130.5 15.2 152 32-196 2-237 (350)
72 PRK09961 exoaminopeptidase; Pr 99.5 2.6E-13 5.7E-18 128.1 15.3 148 31-195 3-224 (344)
73 PRK09864 putative peptidase; P 99.5 9E-13 1.9E-17 124.1 16.5 145 31-195 3-231 (356)
74 KOG2194 Aminopeptidases of the 99.0 1.5E-09 3.3E-14 109.8 10.8 148 26-195 55-227 (834)
75 PF04389 Peptidase_M28: Peptid 99.0 1E-09 2.2E-14 94.3 6.0 87 92-194 2-90 (179)
76 PF05343 Peptidase_M42: M42 gl 98.8 1E-08 2.3E-13 94.6 8.1 69 120-195 124-192 (292)
77 COG2234 Iap Predicted aminopep 98.0 1.6E-05 3.4E-10 78.1 7.9 52 127-181 224-275 (435)
78 KOG3946 Glutaminyl cyclase [Po 97.9 0.0002 4.4E-09 63.9 11.9 133 27-179 50-200 (338)
79 KOG2195 Transferrin receptor a 97.8 9.2E-05 2E-09 75.5 9.2 81 75-179 337-420 (702)
80 KOG2526 Predicted aminopeptida 97.6 0.0013 2.9E-08 62.1 13.1 154 54-245 165-338 (555)
81 PF05450 Nicastrin: Nicastrin; 96.4 0.016 3.5E-07 51.8 8.4 71 91-179 1-74 (234)
82 COG4882 Predicted aminopeptida 95.6 0.16 3.4E-06 47.6 10.7 73 77-179 179-259 (486)
83 cd00433 Peptidase_M17 Cytosol 93.8 1.4 3E-05 43.7 13.2 125 29-166 155-295 (468)
84 PRK05015 aminopeptidase B; Pro 93.1 2.3 4.9E-05 41.2 12.9 126 29-167 101-247 (424)
85 PF00883 Peptidase_M17: Cytoso 92.7 1.6 3.4E-05 40.7 10.9 121 31-166 1-140 (311)
86 PRK02256 putative aminopeptida 91.1 0.36 7.9E-06 47.6 5.2 49 120-174 250-298 (462)
87 PTZ00412 leucyl aminopeptidase 90.5 5 0.00011 40.2 12.4 126 29-167 213-355 (569)
88 TIGR01893 aa-his-dipept aminoa 89.2 1.2 2.6E-05 44.3 7.3 56 265-334 337-392 (477)
89 PRK02813 putative aminopeptida 85.9 0.88 1.9E-05 44.5 4.0 47 121-174 225-274 (428)
90 PRK00913 multifunctional amino 85.0 24 0.00053 35.1 13.5 125 29-167 172-310 (483)
91 PTZ00371 aspartyl aminopeptida 82.3 2.2 4.9E-05 42.2 5.1 52 121-174 242-294 (465)
92 KOG2597 Predicted aminopeptida 79.9 26 0.00057 34.8 11.3 133 29-168 190-332 (513)
93 PF09940 DUF2172: Domain of un 79.7 7.5 0.00016 37.0 7.3 78 82-192 123-203 (386)
94 PF06675 DUF1177: Protein of u 76.5 57 0.0012 29.3 12.2 98 79-193 15-130 (276)
95 COG0260 PepB Leucyl aminopepti 75.5 61 0.0013 32.3 12.6 126 29-166 168-308 (485)
96 PRK15026 aminoacyl-histidine d 67.0 16 0.00034 36.5 6.6 51 286-338 352-402 (485)
97 COG2195 PepD Di- and tripeptid 63.4 9.6 0.00021 37.1 4.2 90 74-174 44-139 (414)
98 PRK09929 hypothetical protein; 46.7 94 0.002 23.4 6.2 70 1-70 1-72 (91)
99 KOG3566 Glycosylphosphatidylin 45.4 3.2E+02 0.007 27.9 11.3 94 55-179 93-193 (617)
100 COG1464 NlpA ABC-type metal io 41.2 69 0.0015 29.2 5.6 36 37-74 30-66 (268)
101 PTZ00371 aspartyl aminopeptida 35.6 1.5E+02 0.0033 29.5 7.6 67 34-102 9-90 (465)
102 PF02127 Peptidase_M18: Aminop 35.4 43 0.00092 32.9 3.7 49 120-169 225-274 (432)
103 PF04114 Gaa1: Gaa1-like, GPI 33.3 1.2E+02 0.0025 30.6 6.4 74 76-179 3-77 (504)
104 PRK02813 putative aminopeptida 30.1 1.8E+02 0.004 28.5 7.1 56 47-102 19-88 (428)
105 TIGR00702 uncharacterized doma 28.1 1.7E+02 0.0037 28.2 6.4 66 18-83 156-236 (377)
106 COG1362 LAP4 Aspartyl aminopep 26.1 89 0.0019 30.4 4.0 40 126-169 236-275 (437)
107 cd06408 PB1_NoxR The PB1 domai 24.6 2E+02 0.0043 21.4 4.8 46 296-342 14-59 (86)
108 PRK10318 hypothetical protein; 24.5 3.1E+02 0.0066 21.8 6.0 54 8-61 6-64 (121)
109 TIGR03406 FeS_long_SufT probab 24.1 4.5E+02 0.0097 22.3 9.3 28 291-318 114-141 (174)
110 PRK02256 putative aminopeptida 23.9 3.5E+02 0.0075 26.9 7.8 73 28-102 22-105 (462)
111 PF01883 DUF59: Domain of unkn 23.1 1.8E+02 0.004 20.1 4.4 35 284-318 28-62 (72)
112 PF02169 LPP20: LPP20 lipoprot 23.0 1.6E+02 0.0034 21.4 4.2 27 120-148 10-36 (92)
113 COG4310 Uncharacterized protei 22.9 4E+02 0.0087 25.1 7.3 33 129-163 193-225 (435)
114 PRK10259 hypothetical protein; 22.8 3.2E+02 0.007 20.2 6.4 35 35-69 32-68 (86)
115 PRK10866 outer membrane biogen 21.2 3.6E+02 0.0079 24.0 6.9 21 1-21 1-21 (243)
No 1
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-48 Score=354.63 Aligned_cols=301 Identities=49% Similarity=0.844 Sum_probs=273.9
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChh-HHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
...+..++.++++++|||+.|.++.. .+++++....+.+|+.++.+....+.++++.+|+|++|..+.|+|++|+||||
T Consensus 22 ~e~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP 101 (420)
T KOG2275|consen 22 HEENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVP 101 (420)
T ss_pred cccchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccC
Confidence 33678999999999999998877777 99999999999999999988888889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccccc
Q 018435 104 SEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (356)
Q Consensus 104 ~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (356)
+..+.|+++||++..+++|.|||||++|||..+++.|+|++.|+..+..++++|.+.|.+|||.|+..|++.+.+..+++
T Consensus 102 ~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~ 181 (420)
T KOG2275|consen 102 VFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFK 181 (420)
T ss_pred CCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhc
Confidence 98899999999998778999999999999999999999999999999999999999999999998778999999977788
Q ss_pred CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhc-cccc
Q 018435 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAE 262 (356)
Q Consensus 184 ~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 262 (356)
+...++++|+|+..++....+++++||.+|++|++.|.+||+|.|....++.++..+++.+.++++.|.+.+.+. ....
T Consensus 182 ~l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~ 261 (420)
T KOG2275|consen 182 KLNLGFILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFREKQVDLLASGPKLAL 261 (420)
T ss_pred ccceeEEecCCCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHHHhHHHHHHHhhcCCceec
Confidence 888999999998777777788999999999999999999999999999999999999999999998888777653 3445
Q ss_pred CCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEee
Q 018435 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVIN 331 (356)
Q Consensus 263 ~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 331 (356)
+..+|+|++.++||. +.|++|+.+++.+|+|..+..+..++.+++.+.++. ...++++++.+.
T Consensus 262 ~~vtT~Nv~~i~GGv------~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg~t~~f~~~ 325 (420)
T KOG2275|consen 262 GDVTTINVGIINGGV------QSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEGVTLEFSQK 325 (420)
T ss_pred cceeEEeeeeeeccc------ccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhcCCceEEeccCc
Confidence 678999999999999 999999999999999999999999999999656663 345577776554
No 2
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=1.8e-47 Score=370.25 Aligned_cols=298 Identities=58% Similarity=0.987 Sum_probs=249.6
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..++++++|++|++|||+++..++.+++++|.++|+++|++++.++...+.+|+++.++|+++.+|+|+|+|||||||++
T Consensus 7 ~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~ 86 (400)
T TIGR01880 7 EEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVF 86 (400)
T ss_pred chHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCC
Confidence 35889999999999999976556789999999999999999887665556889999998865545899999999999997
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
+..|+++||.+.++++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+..|++++++++.+...
T Consensus 87 ~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~ 166 (400)
T TIGR01880 87 REHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKAL 166 (400)
T ss_pred cccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCC
Confidence 77899999999763589999999999999999999999999998888899999999999999865699999987656556
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhc-ccccCC
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAEGE 264 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 264 (356)
+.+++++.+...|++...++.+++|..+++|+++|+++|++.+...||+..++.++..|.++...+...+... ....+.
T Consensus 167 ~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 246 (400)
T TIGR01880 167 NLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIGD 246 (400)
T ss_pred ceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCccccccc
Confidence 7788888776566655689999999999999999999999987655999999999998887654332222211 011123
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
.++++++.++||. ..|+||++|++.+|+|++|.++.+++.++|++.+.....++++++.
T Consensus 247 ~~t~~v~~i~gG~------~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~~~~~~~~~~ 305 (400)
T TIGR01880 247 VTSVNLTKLKGGV------QSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADAGEGVTYEFS 305 (400)
T ss_pred cceeecceeccCC------cCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhccCCceEEEEe
Confidence 4799999999998 8999999999999999999999999999999887632345666654
No 3
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3e-45 Score=352.06 Aligned_cols=278 Identities=20% Similarity=0.301 Sum_probs=234.7
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~- 106 (356)
++++++|++|++|||+ +++|.+++++|.++|+++|++++.++..++.+|+++.+ |.+ .|+|+|+||+||||+++
T Consensus 2 ~~~~~~l~~Lv~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~ 76 (377)
T PRK08588 2 EEKIQILADIVKINSV--NDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGDV 76 (377)
T ss_pred hHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCCc
Confidence 5789999999999997 56899999999999999999988766666788999998 443 38999999999999964
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
++|+++||.+.+ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+ .|++++++++.+.+.+
T Consensus 77 ~~w~~~Pf~~~~-~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~-~G~~~~~~~~~~~~~d 154 (377)
T PRK08588 77 DKWTYDPFELTE-KDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGE-LGAKQLTEKGYADDLD 154 (377)
T ss_pred ccCcCCCCCeEE-ECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCc-hhHHHHHhcCccCCCC
Confidence 789999999998 99999999999999999999999999999888888999999999999986 6999999987666667
Q ss_pred eEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCc
Q 018435 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (356)
Q Consensus 187 ~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 265 (356)
.+++. +|+ ...++++++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++... +... ......
T Consensus 155 ~~i~~-----ep~-~~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~----~~~~-~~~~~~ 223 (377)
T PRK08588 155 ALIIG-----EPS-GHGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDS----IKKH-NPYLGG 223 (377)
T ss_pred EEEEe-----cCC-CceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhh----hccc-CccCCC
Confidence 65554 344 2478899999999999999999999999999 9999999999998765321 1100 001134
Q ss_pred eeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 266 ~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
++++++.++||. ..|+||++|++++|+|+.|.++.+++.++|++++.. ...++++++.
T Consensus 224 ~t~~v~~i~gG~------~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~ 283 (377)
T PRK08588 224 LTHVVTIINGGE------QVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLSLD 283 (377)
T ss_pred CceeeeEEeCCC------cCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceEEE
Confidence 799999999998 999999999999999999999999999999987762 2234445444
No 4
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=362.74 Aligned_cols=293 Identities=20% Similarity=0.318 Sum_probs=235.5
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEee---cCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF---AKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~---~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
.....++++++|++|++|||+++.+++.++++||.++|+++|++++.++. .++++|+++.++|+++ .++|+|+|||
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~ 110 (472)
T PRK09133 32 PTADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHM 110 (472)
T ss_pred cchhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeec
Confidence 44567899999999999999976678899999999999999998654442 3467999999987654 3789999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc-cCccccHHHHhc
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE-IGGHDGAEKFAD 178 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE-~g~~~G~~~~~~ 178 (356)
||||+++++|+++||++++ +||++||||++|||++++++|++++.|++.+..++++|.|+|+++|| +|+ .|++++++
T Consensus 111 DtVp~~~~~W~~dPf~~~~-~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~-~G~~~l~~ 188 (472)
T PRK09133 111 DVVEAKREDWTRDPFKLVE-ENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPM-NGVAWLAE 188 (472)
T ss_pred ccCCCChhcCCCCCCcceE-eCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCcc-chHHHHHH
Confidence 9999977789999999999 99999999999999999999999999999887889999999999999 664 79999997
Q ss_pred ccc-ccCCceEEEEecCc------cCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhh-
Q 018435 179 SHV-FNSLNVGIVLDEGL------ASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRAS- 250 (356)
Q Consensus 179 ~~~-~~~~~~~~~~~~g~------~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~- 250 (356)
+.. ....+++++ +.+. .+|+ ...++.+++|..+++|+++|+++|++.|+..||+..+++++..+.++...
T Consensus 189 ~~~~~~~~~~~i~-e~~~~~~~~~gept-~~~i~~g~kG~~~~~i~v~G~~~Hss~p~~~nAi~~l~~~l~~l~~~~~~~ 266 (472)
T PRK09133 189 NHRDLIDAEFALN-EGGGGTLDEDGKPV-LLTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPV 266 (472)
T ss_pred HHhhccCeEEEEE-CCCccccCCCCCce-EEEeeeecceeEEEEEEEecCCCCCCCCCCCChHHHHHHHHHHHhhCCCCC
Confidence 632 113455555 4332 2333 24577899999999999999999999987559999999999998764210
Q ss_pred --------hHHH---------------H-------------H-hcccccCCceeeeEeeeecCCCCCCCccccccCCeEE
Q 018435 251 --------QFDL---------------V-------------K-AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAE 293 (356)
Q Consensus 251 --------~~~~---------------~-------------~-~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~ 293 (356)
.+.. + . .........++++++.++||. ..|+||++|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~------~~NvVP~~a~ 340 (472)
T PRK09133 267 MLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGH------AENALPQRAT 340 (472)
T ss_pred ccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCC------cCccCCCceE
Confidence 0000 0 0 000000134789999999997 9999999999
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 294 AGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 294 ~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
+.+|+|++|.++.+++.++|++.+. . .++++++
T Consensus 341 ~~lDiR~~p~~~~e~v~~~I~~~i~-~-~~v~v~~ 373 (472)
T PRK09133 341 ANVNCRIFPGDTIEAVRATLKQVVA-D-PAIKITR 373 (472)
T ss_pred EEEEEEeCCchhHHHHHHHHHHHhc-C-CCEEEEE
Confidence 9999999999999999999998775 2 3455544
No 5
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.6e-45 Score=357.07 Aligned_cols=299 Identities=20% Similarity=0.310 Sum_probs=235.7
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCc-ChhHHHHHHHHHHHHCCCceEEEeecC--------CCceEEEEecCCCCCCCcE
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSI 93 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~g~~~~~~~~~~--------~~~nv~~~~~g~~~~~~~i 93 (356)
++...++++++|++|++|||.++.+ +|.++++||.++|+++|++++.++..+ +++|++++++|+.+ .|+|
T Consensus 9 ~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~i 87 (427)
T PRK13013 9 IEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD-GDCV 87 (427)
T ss_pred HHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC-CCEE
Confidence 4556789999999999999987654 568999999999999999988764321 25699999977643 4789
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
+|++|+||||++ +.|+++||++.+ +||+|||||++|||++++++|.|++.|++.+..++++|.|+|+++||+|+..|.
T Consensus 88 ~l~gH~DvVp~~-~~W~~~Pf~~~~-~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~ 165 (427)
T PRK13013 88 HFNSHHDVVEVG-HGWTRDPFGGEV-KDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGGFGGV 165 (427)
T ss_pred EEEeccccCCCC-CCCcCCCCCceE-ECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCChhHH
Confidence 999999999986 679999999999 999999999999999999999999999998877889999999999999875578
Q ss_pred HHHhcccccc--CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhh
Q 018435 174 EKFADSHVFN--SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS 250 (356)
Q Consensus 174 ~~~~~~~~~~--~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~ 250 (356)
+++++++.+. ..+.+++. +|++...+..+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++...
T Consensus 166 ~~l~~~~~~~~~~~d~~i~~-----ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~ 240 (427)
T PRK13013 166 AYLAEQGRFSPDRVQHVIIP-----EPLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFP 240 (427)
T ss_pred HHHHhcCCccccCCCEEEEe-----cCCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhh
Confidence 8888776554 34666654 35443468899999999999999999999999999 9999999999998653211
Q ss_pred hHHHHHhccc---ccCCceeeeEeeeecCCCCC----CCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc---C
Q 018435 251 QFDLVKAGLK---AEGEVVSVNMAFLKAGTPSP----NGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP---A 320 (356)
Q Consensus 251 ~~~~~~~~~~---~~~~~~~v~~~~i~~g~~~~----~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~---~ 320 (356)
.......... ......+++++.++||.... .....|+||++|++.+|+|++|.++.+++.++|++.+.. .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~~ 320 (427)
T PRK13013 241 LLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKRA 320 (427)
T ss_pred hhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0000000000 01124789999999987210 000129999999999999999999999999999876652 2
Q ss_pred CCCceEEEE
Q 018435 321 SRNMTFEVV 329 (356)
Q Consensus 321 ~~~~~~~~~ 329 (356)
..++++++.
T Consensus 321 ~~~~~~~~~ 329 (427)
T PRK13013 321 RPGFAYEIR 329 (427)
T ss_pred CCCceeEEE
Confidence 335666654
No 6
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=4.4e-44 Score=346.49 Aligned_cols=291 Identities=22% Similarity=0.330 Sum_probs=234.0
Q ss_pred ChhHHHHHHHhhhcccCCCCC---cChhHHHHHHHHHHHHCCCc-eEEEeecC----C--CceEEEEecCCCCCCCcEEE
Q 018435 26 SDDSIIERFRAYLQIDTSQPN---PDYTNASKFILAQAEALSLE-SQTLEFAK----N--KPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~---~~e~~~~~~l~~~l~~~g~~-~~~~~~~~----~--~~nv~~~~~g~~~~~~~il~ 95 (356)
..++++++|++|++|||+++. .+|.+++++|.++|+++|++ ++.++..+ + .+|+++.++|..+ .++|+|
T Consensus 3 ~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~-~~~lll 81 (400)
T PRK13983 3 LRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDG-KRTLWI 81 (400)
T ss_pred hHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCC-CCeEEE
Confidence 457899999999999998753 35889999999999999998 77655332 1 6899999987543 369999
Q ss_pred EeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 96 NSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 96 ~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
+||+||||+++ +.|+.+||.+++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+..|++
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~-~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~ 160 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVV-KDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQ 160 (400)
T ss_pred EeeccccCCCCcccccCCCCccee-eCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHH
Confidence 99999999975 689999999999 8999999999999999999999999999988888999999999999988755899
Q ss_pred HHhcc--ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHc-chhh
Q 018435 175 KFADS--HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRAS 250 (356)
Q Consensus 175 ~~~~~--~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~-~~~~ 250 (356)
++++. +.+...+.+++.+.+ .|++. .++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.+ +...
T Consensus 161 ~~~~~~~~~~~~~d~~i~~~~~--~~~~~-~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~ 237 (400)
T PRK13983 161 YLLKKHPELFKKDDLILVPDAG--NPDGS-FIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEK 237 (400)
T ss_pred HHHhhcccccCCCCEEEEecCC--CCCCc-eeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99976 445556777776543 35543 68899999999999999999999999998 999999999999876 3221
Q ss_pred hHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEE
Q 018435 251 QFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEV 328 (356)
Q Consensus 251 ~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 328 (356)
+......+ .....+++++.+.+|. .+.|+||++|++++|+|++|.++.+.+.++|++.+.. ...+.++++
T Consensus 238 -~~~~~~~~--~~~~~~~~~~~~~~g~-----~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v~~ 309 (400)
T PRK13983 238 -FNAKDPLF--DPPYSTFEPTKKEANV-----DNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKIEV 309 (400)
T ss_pred -hccccccc--CCCCcccccceeecCC-----cCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCcceeE
Confidence 11000000 0122466677777652 1789999999999999999999999999999987762 233445555
Q ss_pred E
Q 018435 329 V 329 (356)
Q Consensus 329 ~ 329 (356)
.
T Consensus 310 ~ 310 (400)
T PRK13983 310 E 310 (400)
T ss_pred E
Confidence 4
No 7
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=1.5e-44 Score=347.05 Aligned_cols=281 Identities=20% Similarity=0.354 Sum_probs=233.1
Q ss_pred HHHHhhhcccCCC-CCcChhHHHHHHHHHHHHCCCceEEEeecCCCc----eEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 32 ERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFAKNKP----LILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 32 ~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~----nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
++|++|++|||++ ++++|.++++||.++|+++|++++.++...+.+ |+++.++|++ .+|+|+|+|||||||+++
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~ 80 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGD 80 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCC
Confidence 6899999999977 467899999999999999999988765433333 4677777754 358999999999999965
Q ss_pred -CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 107 -~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
++|+++||++.+ ++|++||||++|||++++++|++++.|++.+..++++|.|+|+++||.|+ .|++++++++.+++.
T Consensus 81 ~~~w~~~Pf~~~~-~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~G~~~~~~~~~~~~~ 158 (375)
T TIGR01910 81 LELWKTDPFKPVE-KDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDA 158 (375)
T ss_pred hhhCcCCCCCcEE-ECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCc-hhHHHHHHcCCCCCC
Confidence 799999999998 89999999999999999999999999999887788999999999999986 599999987655556
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCC
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 264 (356)
+.+++.+ |++...++++++|..+++|+++|+++|++.|+.+ ||+..+++++..|.++.......... .....
T Consensus 159 d~~i~~~-----~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~--~~~~~ 231 (375)
T TIGR01910 159 DGVLIPE-----PSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSY--GFIPG 231 (375)
T ss_pred CEEEECC-----CCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc--cccCC
Confidence 7776654 4434588999999999999999999999999998 99999999999998765321111000 01123
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEE
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEV 328 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 328 (356)
.++++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++
T Consensus 232 ~~t~~i~~i~gG~------~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 291 (375)
T TIGR01910 232 PITFNPGVIKGGD------WVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYEN 291 (375)
T ss_pred CccccceeEECCC------CcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhC
Confidence 5799999999998 999999999999999999999999999999987762 234455544
No 8
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=2.8e-44 Score=350.27 Aligned_cols=277 Identities=22% Similarity=0.376 Sum_probs=230.7
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCceEEEEecC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKWPG 85 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~-----------------~~~~nv~~~~~g 85 (356)
++...+++++++++|++|||+ +++|.+++++|.++|+++|++++.+... .+++||++.++|
T Consensus 12 ~~~~~~~~~~~l~~lv~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g 89 (422)
T PRK06915 12 IESHEEEAVKLLKRLIQEKSV--SGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKG 89 (422)
T ss_pred HHhhHHHHHHHHHHHHhCCCC--CcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcC
Confidence 445567899999999999997 5789999999999999999998765432 246899999987
Q ss_pred CCCCCCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeec
Q 018435 86 SNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (356)
Q Consensus 86 ~~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (356)
.++ .|+|+|+|||||||+++ .+|+++||++++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+++
T Consensus 90 ~~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~~~d 167 (422)
T PRK06915 90 SGG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEV-IGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQSVIE 167 (422)
T ss_pred CCC-CCeEEEEeeccccCCCCcccCcCCCCCceE-ECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc
Confidence 654 48999999999999975 689999999999 899999999999999999999999999998877889999999999
Q ss_pred cccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHH
Q 018435 165 EEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIES 243 (356)
Q Consensus 165 EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~ 243 (356)
||.|+ .|+.+++..+ + ..|.+++. +|++ ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..
T Consensus 168 EE~g~-~G~~~~~~~~-~-~~d~~i~~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~~ 238 (422)
T PRK06915 168 EESGG-AGTLAAILRG-Y-KADGAIIP-----EPTN-MKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFVIDH 238 (422)
T ss_pred cccCC-cchHHHHhcC-c-CCCEEEEC-----CCCC-ccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHHHHH
Confidence 99886 5888877764 3 35665553 3543 468899999999999999999999999999 999999999999
Q ss_pred HHcchhhhHHHHHhc-ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 244 VRRFRASQFDLVKAG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 244 i~~~~~~~~~~~~~~-~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
+.++........... +.......+++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.
T Consensus 239 l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~ 308 (422)
T PRK06915 239 LRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGS------WPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIA 308 (422)
T ss_pred HHHHHHHhccccCCCcccCCCCCceEeEEEeeCCC------CCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 987653210000000 0111123589999999998 89999999999999999999999999999987665
No 9
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4.1e-44 Score=349.29 Aligned_cols=280 Identities=20% Similarity=0.301 Sum_probs=233.2
Q ss_pred cCCCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCceEEEEe
Q 018435 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKW 83 (356)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~-----------------~~~~nv~~~~ 83 (356)
.+++.+.++++++|++|++|||+ +++|.++++||.++|+++|++++.++.. ++.+||++.+
T Consensus 13 ~~i~~~~~~~~~~l~~li~ipS~--s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~ 90 (427)
T PRK06837 13 AAVDAGFDAQVAFTQDLVRFPST--RGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTY 90 (427)
T ss_pred HHHHhhhHHHHHHHHHHhccCCC--CCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEe
Confidence 34566789999999999999997 5689999999999999999998765432 3579999999
Q ss_pred cCCCCCCCcEEEEeecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEe
Q 018435 84 PGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFV 162 (356)
Q Consensus 84 ~g~~~~~~~il~~aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~ 162 (356)
+|++++.|+|+|+|||||||+++ ++|+++||++++ ++|++||||++|||++++++|.|++.|++.+..++++|.|+|+
T Consensus 91 ~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~ 169 (427)
T PRK06837 91 RPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVI-VDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARVHFQSV 169 (427)
T ss_pred cCCCCCCCeEEEEeecccCCCCCccccccCCCCcEE-ECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 87665568999999999999976 789999999999 9999999999999999999999999999988888899999999
Q ss_pred eccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHH
Q 018435 163 PDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSI 241 (356)
Q Consensus 163 ~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~ 241 (356)
++||.++ .|+..++..+. ..|.+++. +|+. ..++++++|..+++|+++|+++|++.|+.+ ||+..+++++
T Consensus 170 ~dEE~~g-~g~~~~~~~~~--~~d~~iv~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i 240 (427)
T PRK06837 170 IEEESTG-NGALSTLQRGY--RADACLIP-----EPTG-EKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLI 240 (427)
T ss_pred eccccCC-HhHHHHHhcCc--CCCEEEEc-----CCCC-CccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHHH
Confidence 9999876 47777776543 35666654 3443 478899999999999999999999999999 9999999999
Q ss_pred HHHHcchhhhHHH-HH-hcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 242 ESVRRFRASQFDL-VK-AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 242 ~~i~~~~~~~~~~-~~-~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
..|.++....... .. ..+.......+++++.++||. ..|+||++|++.+++|+.|.++.+++.++|++.+.
T Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~------~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~ 313 (427)
T PRK06837 241 QALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGD------WASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLA 313 (427)
T ss_pred HHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCC------CCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHH
Confidence 9998765321110 00 001111234689999999997 88999999999999999999999999999987665
No 10
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.6e-43 Score=339.31 Aligned_cols=282 Identities=23% Similarity=0.304 Sum_probs=228.4
Q ss_pred hhHHHHHHHhhhcccCCCCC-----cChhHHHHHHHHHHHHCCCceEEEeec--CCCceEEEEecCCCCCCCcEEEEeec
Q 018435 27 DDSIIERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~-----~~e~~~~~~l~~~l~~~g~~~~~~~~~--~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
.++++++|++|++|||+|+. .++.++++||.++|+++|++++.+... .+++|+++.+ |.+ .++|+|+|||
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~ 80 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHT 80 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeee
Confidence 35799999999999998642 124689999999999999998866542 2567999999 543 2579999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
||||+++++|+.+||++.+ ++|++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||+|+ .|+++++++
T Consensus 81 Dvvp~~~~~W~~~Pf~~~~-~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~-~G~~~~~~~ 156 (383)
T PRK05111 81 DTVPFDEGRWTRDPFTLTE-HDGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSM-AGARAFAEA 156 (383)
T ss_pred ceecCCCCcCcCCCCccEE-ECCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCc-ccHHHHHhc
Confidence 9999977789999999988 8999999999999999999999999998754 46899999999999986 699999987
Q ss_pred ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhc
Q 018435 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (356)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~ 258 (356)
+.++ .+.+++. +|+. ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+..+..........+
T Consensus 157 ~~~~-~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~ 229 (383)
T PRK05111 157 TAIR-PDCAIIG-----EPTS-LKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNP 229 (383)
T ss_pred CCCC-CCEEEEc-----CCCC-CceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 5444 4555543 3553 356789999999999999999999999999 999999999999877643210000000
Q ss_pred ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 259 ~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
... ...++++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 230 ~~~-~~~~t~~i~~i~gg~------~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~ 295 (383)
T PRK05111 230 AFT-VPYPTLNLGHIHGGD------APNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRITVA 295 (383)
T ss_pred cCC-CCCCceeEeeeecCC------cCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 000 134789999999997 899999999999999999999999999999877762 2345566654
No 11
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=344.16 Aligned_cols=293 Identities=19% Similarity=0.239 Sum_probs=228.0
Q ss_pred hHHHHHHHhhhcccCCCCCc-ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
++++++|++|++|||+++.+ ++.++++||.++|+++|++++.++. .+++|+++.+++ + .+|+|+|+||+||||+++
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~-~~~~~lia~~~~-~-~~~~vll~gH~DvVp~~~ 78 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERT-KGHPVVYGEINV-G-AKKTLLIYNHYDVQPVDP 78 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEec-CCCCEEEEEecC-C-CCCEEEEEecccCCCCCc
Confidence 67899999999999986432 2379999999999999999887654 367899999853 2 358999999999999976
Q ss_pred -CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc-ccC
Q 018435 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV-FNS 184 (356)
Q Consensus 107 -~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~-~~~ 184 (356)
++|+++||++.+ +||+|||||++|||++++++|.|++.|++.+ .++.+|.|+|+++||.|+ .|+++++++.. ..+
T Consensus 79 ~~~W~~~Pf~~~~-~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~-~g~~~~l~~~~~~~~ 155 (436)
T PRK06446 79 LSEWKRDPFSATI-ENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGS-PNLEDFIEKNKNKLK 155 (436)
T ss_pred cccccCCCCceEE-ECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCC-HhHHHHHHHHHHHhC
Confidence 789999999999 9999999999999999999999999998765 567899999999999997 58888887521 223
Q ss_pred CceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEe--cCCccCCCCCC-CHHHHHHHHHHHHHcchh------------
Q 018435 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN-SAMENLFKSIESVRRFRA------------ 249 (356)
Q Consensus 185 ~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G--~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~------------ 249 (356)
.++++ ++.....+.+...++++++|..+++++++| +++|++.|+.+ ||+..+++++..|.+...
T Consensus 156 ~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 234 (436)
T PRK06446 156 ADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVR 234 (436)
T ss_pred CCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCC
Confidence 45544 443332233445799999999999999999 99999999888 999999999999975420
Q ss_pred ----hhHHHHH----------hcc--------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecC
Q 018435 250 ----SQFDLVK----------AGL--------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVP 301 (356)
Q Consensus 250 ----~~~~~~~----------~~~--------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~ 301 (356)
.....+. ... ......+++|++.+++|.. ++.+.|+||++|++++|+|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~--~~~~~nvvP~~a~~~~d~R~~ 312 (436)
T PRK06446 235 ELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYT--GKGSKTIVPSRAFAKLDFRLV 312 (436)
T ss_pred CCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeecccc--CCCCCcEecCceEEEEEEEcC
Confidence 0000000 000 0011247889988988741 112679999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 302 PTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 302 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
|.++.+++.++|++.+.....++++++.
T Consensus 313 p~~~~~~v~~~l~~~~~~~~~~~~~~~~ 340 (436)
T PRK06446 313 PNQDPYKIFELLKKHLQKVGFNGEIIVH 340 (436)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEc
Confidence 9999999999999887632234455443
No 12
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=343.94 Aligned_cols=290 Identities=29% Similarity=0.492 Sum_probs=228.2
Q ss_pred HHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC
Q 018435 31 IERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~ 106 (356)
+++|++|++|||+++. ++|.++++||.++|+++|++++.++..++.+|+++.++|++++.|+|+|++|+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 6889999999998732 578999999999999999999876655678999999987655558999999999999977
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc--cccC
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNS 184 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~~~ 184 (356)
++|+.+||++.+ +||++||||++|||++++++|+|++.|++.+..++++|.|+|+++||+|+..|++++++.. .+..
T Consensus 82 ~~W~~~Pf~~~~-~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 ADWSVHPFSGEI-RDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred ccCccCCCCcee-eCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 789999999998 8999999999999999999999999999998888999999999999998756999988753 1222
Q ss_pred CceEEEEecCcc-----CcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhh--------
Q 018435 185 LNVGIVLDEGLA-----STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQ-------- 251 (356)
Q Consensus 185 ~~~~~~~~~g~~-----~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~-------- 251 (356)
.+ .++.+.+.. .+.....++++++|..+++|+++|+++|++.|+..||+..+++++..+.++....
T Consensus 161 ~~-~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 239 (426)
T PRK07906 161 VT-EAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRLAEAVARIGRHRWPLVLTPTVRA 239 (426)
T ss_pred hh-eEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 22 233332211 1112246899999999999999999999999875699999999999987643110
Q ss_pred -HHHHHh--c--c------------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHH
Q 018435 252 -FDLVKA--G--L------------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (356)
Q Consensus 252 -~~~~~~--~--~------------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~ 308 (356)
+..+.. . + ......++++++.++||. +.|+||++|++.+|+|++|.+. ++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~------~~NviP~~~~~~~d~R~~p~~~-~~ 312 (426)
T PRK07906 240 FLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGY------KVNVIPGTAEAVVDGRFLPGRE-EE 312 (426)
T ss_pred HHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccC------ccccCCCceEEEEEEeECCCCc-HH
Confidence 000000 0 0 000013689999999998 8999999999999999999886 77
Q ss_pred HHHHHHHHhccCCCCceEEEEeec
Q 018435 309 LERRIVEEWAPASRNMTFEVVINS 332 (356)
Q Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~~~ 332 (356)
+.++|++.+. ..+++++....
T Consensus 313 i~~~i~~~~~---~~v~~~~~~~~ 333 (426)
T PRK07906 313 FLATVDELLG---PDVEREWVHRD 333 (426)
T ss_pred HHHHHHHHhC---CCeEEEEecCC
Confidence 8888876553 24556554433
No 13
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=346.42 Aligned_cols=301 Identities=21% Similarity=0.305 Sum_probs=232.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEee
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH 98 (356)
+.+..++++++|++|++|||+++. .++.++++||.++|+++|++...+....+++||++.+.|. +.+|+|+|+||
T Consensus 9 ~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~-~~~~~lll~gH 87 (456)
T PRK08201 9 LRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHA-PGKPTVLIYGH 87 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCC-CCCCEEEEEec
Confidence 455678999999999999998642 3567899999999999999743333334678999988664 34589999999
Q ss_pred cccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 99 TDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 99 ~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
+||||+++ .+|+++||++++ ++|++||||++|||++++++|+|++.|++.+..++++|.|+++++||.|+ .|+.+++
T Consensus 88 ~DvVp~~~~~~W~~dPf~~~~-~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~l 165 (456)
T PRK08201 88 YDVQPVDPLNLWETPPFEPTI-RDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGS-PNLDSFV 165 (456)
T ss_pred cCCcCCCchhcccCCCCceEe-ECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCC-ccHHHHH
Confidence 99999976 679999999999 99999999999999999999999999987666778899999999999997 5888888
Q ss_pred cccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCC--ccCCCC-CC-CHHHHHHHHHHHHHcchhh--
Q 018435 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLY-DN-SAMENLFKSIESVRRFRAS-- 250 (356)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~--Hs~~p~-~g-nai~~~~~~~~~i~~~~~~-- 250 (356)
++.. .-..+.+++.+.+...++ ...++++++|..+++|+++|+++ ||+.|. .+ ||+..+++++..|.++...
T Consensus 166 ~~~~~~~~~d~~ii~e~~~~~~~-~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~ 244 (456)
T PRK08201 166 EEEKDKLAADVVLISDTTLLGPG-KPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVA 244 (456)
T ss_pred HhhHHhccCCEEEEeCCCcCCCC-CEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEe
Confidence 7531 112466777664432222 24699999999999999999998 998765 45 9999999999998753210
Q ss_pred --------------hHHH----------HHh-----ccc---------ccCCceeeeEeeeecCCCCCCCccccccCCeE
Q 018435 251 --------------QFDL----------VKA-----GLK---------AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEA 292 (356)
Q Consensus 251 --------------~~~~----------~~~-----~~~---------~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~ 292 (356)
.... ++. ... .....+|++++.++||.. ++...|+||++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~NvVP~~a 322 (456)
T PRK08201 245 VEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQ--GEGTKTVIPAEA 322 (456)
T ss_pred cCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCC--CCCCceEECcce
Confidence 0000 000 000 001135888988988762 223579999999
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEE
Q 018435 293 EAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVV 329 (356)
Q Consensus 293 ~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 329 (356)
++.+|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 323 ~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~ 360 (456)
T PRK08201 323 HAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIR 360 (456)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 999999999999999999999988762 1344555554
No 14
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=2.8e-43 Score=342.82 Aligned_cols=277 Identities=20% Similarity=0.303 Sum_probs=229.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCC-CCcEEEEeecc
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ-LPSILLNSHTD 100 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~-~~~il~~aH~D 100 (356)
+....++++++|++|++|||+++. .+|.++++||.++|+++|++++.++..++.+|+++.++|+++. .|+|+|+||+|
T Consensus 8 i~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~D 87 (421)
T PRK08596 8 IELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMD 87 (421)
T ss_pred HHhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEecccc
Confidence 445568899999999999998754 3688999999999999999988776656789999999876442 36799999999
Q ss_pred cCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 101 VVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 101 tvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
|||+++ ++|+.+||.+++ ++|++||||++|||++++++|+|+++|++.+..++++|.|+|+++||+|+ .|+++++++
T Consensus 88 tVp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~-~G~~~~~~~ 165 (421)
T PRK08596 88 VAEVSADEAWETNPFEPTI-KDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGE-AGTLQCCER 165 (421)
T ss_pred ccCCCCccccccCCCCcEE-ECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCC-cCHHHHHhc
Confidence 999976 579999999999 99999999999999999999999999999988888999999999999986 699999987
Q ss_pred ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEec----------CCccCCCCCC-CHHHHHHHHHHHHHcch
Q 018435 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA----------PGHGAKLYDN-SAMENLFKSIESVRRFR 248 (356)
Q Consensus 180 ~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~----------~~Hs~~p~~g-nai~~~~~~~~~i~~~~ 248 (356)
+. ..+++++.+ |+. ....+++|...+.++++|. ++|++.|+.| ||+..+++++..+.++.
T Consensus 166 ~~--~~d~~i~~e-----p~~--~~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~ 236 (421)
T PRK08596 166 GY--DADFAVVVD-----TSD--LHMQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELE 236 (421)
T ss_pred CC--CCCEEEECC-----CCC--CccccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHH
Confidence 53 357777775 332 2247888988777777775 4799999888 99999999999998764
Q ss_pred hhhHHHHHhcccc-cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 249 ASQFDLVKAGLKA-EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.. +..... ... .....+++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.
T Consensus 237 ~~-~~~~~~-~~~~~~~~~t~~v~~i~gG~------~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~ 299 (421)
T PRK08596 237 RH-WAVMKS-YPGFPPGTNTINPAVIEGGR------HAAFIADECRLWITVHFYPNETYEQVIKEIEEYIG 299 (421)
T ss_pred HH-Hhhccc-CccCCCCCcceeeeeeeCCC------CCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHH
Confidence 32 111010 001 1134689999999998 99999999999999999999999999999997765
No 15
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=6.2e-43 Score=336.90 Aligned_cols=281 Identities=22% Similarity=0.260 Sum_probs=228.0
Q ss_pred hHHHHHHHhhhcccCCCCCcCh-hHHHHHHHHHHHHCCCceEEEeec-CCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFA-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e-~~~~~~l~~~l~~~g~~~~~~~~~-~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
.+++++|++|++|||.| +++ .++++|+.++|+++|++++.++.. ++.+|+++.+++. ..|+|+|+||+||||++
T Consensus 4 ~~~~~~l~~lv~i~S~s--~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVS--RDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcC--CCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCC
Confidence 67999999999999985 454 599999999999999998765543 3568999999544 24899999999999998
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc--c
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--N 183 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~ 183 (356)
+.+|+.+||++.+ +||++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||.|+ .|++++++.... .
T Consensus 80 ~~~W~~~pf~~~~-~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~g~-~G~~~l~~~~~~~~~ 155 (385)
T PRK07522 80 GQAWTSDPFRLTE-RDGRLYGRGTCDMKGFIAAALAAVPELAAAP--LRRPLHLAFSYDEEVGC-LGVPSMIARLPERGV 155 (385)
T ss_pred CCCCCCCCCceEE-ECCEEEeccccccchHHHHHHHHHHHHHhCC--CCCCEEEEEEeccccCC-ccHHHHHHHhhhcCC
Confidence 7899999999988 8999999999999999999999999998874 57899999999999886 699999875321 1
Q ss_pred CCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc-cc
Q 018435 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL-KA 261 (356)
Q Consensus 184 ~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 261 (356)
..+.+++. +|++ ..++++++|..+++|+++|+++|++.|+.+ ||+..+++++..++++....... ... ..
T Consensus 156 ~~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~--~~~~~~ 227 (385)
T PRK07522 156 KPAGCIVG-----EPTS-MRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAP--GPFDAL 227 (385)
T ss_pred CCCEEEEc-----cCCC-CeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhc--CCCCcC
Confidence 24555543 3543 478999999999999999999999999888 99999999999998764321100 000 00
Q ss_pred c-CCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--------CCCCceEEEEe
Q 018435 262 E-GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--------ASRNMTFEVVI 330 (356)
Q Consensus 262 ~-~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~ 330 (356)
. ...++++++.++||. ..|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++..
T Consensus 228 ~~~~~~t~~i~~i~gG~------~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~~~ 299 (385)
T PRK07522 228 FDPPYSTLQTGTIQGGT------ALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIEFEP 299 (385)
T ss_pred CCCCcceeEEeeeecCc------cccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEEEEe
Confidence 0 113688999999987 899999999999999999999999999999987752 23456666544
No 16
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=1.1e-42 Score=332.72 Aligned_cols=276 Identities=21% Similarity=0.281 Sum_probs=225.0
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC--CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCC
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~--~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w 109 (356)
++|++|++|||+++ .++.++++||.++|+++|++++.++..+ +++|+++.+.++ +.|+|+|+||+||||++++.|
T Consensus 1 ~~l~~lv~i~S~s~-~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w 77 (364)
T TIGR01892 1 EILTKLVAFDSTSF-RPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAW 77 (364)
T ss_pred ChHHHhhCcCCcCC-ccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcC
Confidence 46899999999853 2347999999999999999988765433 368999999553 347999999999999987899
Q ss_pred CCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEE
Q 018435 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (356)
Q Consensus 110 ~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~ 189 (356)
+++||++.+ ++|++||||++|||++++++|++++.|++.. ++++|.|+|+++||+|+ .|++++++++.+ ..+.++
T Consensus 78 ~~~Pf~~~~-~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~g~-~G~~~~~~~~~~-~~d~~i 152 (364)
T TIGR01892 78 TRDPFRLTE-KDGRLYGRGTCDMKGFLACALAAAPDLAAEQ--LKKPLHLALTADEEVGC-TGAPKMIEAGAG-RPRHAI 152 (364)
T ss_pred CCCCCccee-eCCEEEecCccccchHHHHHHHHHHHHHhcC--cCCCEEEEEEeccccCC-cCHHHHHHhcCC-CCCEEE
Confidence 999999988 8999999999999999999999999998764 57899999999999986 699999987643 345555
Q ss_pred EEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc-cc-CCce
Q 018435 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK-AE-GEVV 266 (356)
Q Consensus 190 ~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~ 266 (356)
+. +|++ ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++..... ...+. .. ...+
T Consensus 153 ~~-----ep~~-~~~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~~~~~~~~~~~~ 223 (364)
T TIGR01892 153 IG-----EPTR-LIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLL---REDLDEGFTPPYT 223 (364)
T ss_pred EC-----CCCC-ceeEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhc---cCCCCccCCCCCc
Confidence 43 3553 356778999999999999999999999998 999999999999987643110 00000 01 1247
Q ss_pred eeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc---CCCCceEEEEe
Q 018435 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP---ASRNMTFEVVI 330 (356)
Q Consensus 267 ~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~ 330 (356)
+++++.++||. +.|+||++|++.+|+|++|.++.+++.++|++.+.. ...++++++..
T Consensus 224 ~~~i~~i~gg~------~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~~~~ 284 (364)
T TIGR01892 224 TLNIGVIQGGK------AVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQIEV 284 (364)
T ss_pred eEEEeeeecCC------CCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 99999999987 999999999999999999999999999999977752 23456666543
No 17
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=2e-42 Score=332.29 Aligned_cols=279 Identities=20% Similarity=0.270 Sum_probs=225.4
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-C
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-S 107 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~-~ 107 (356)
+++++|++|++|||. ++++.+++++|.++|+++|++++.++. ++.+|+++.+ |. .+|+|+|+||+||||+++ +
T Consensus 3 ~~~~~l~~Lv~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~ 76 (375)
T PRK13009 3 DVLELAQDLIRRPSV--TPDDAGCQDLLAERLEALGFTCERMDF-GDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDLE 76 (375)
T ss_pred hHHHHHHHHhCCCCC--CCchhhHHHHHHHHHHHcCCeEEEecc-CCCcEEEEEe-cC--CCCEEEEEeecccCCCCCcc
Confidence 578999999999997 457899999999999999999876543 4578999988 54 248999999999999975 6
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc--ccCC
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSL 185 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~~~ 185 (356)
+|+++||++++ +||++||||++|||++++++|.|++.|++.+..++++|+|+|+++||.++..|++.+++... ....
T Consensus 77 ~w~~~Pf~~~~-~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~ 155 (375)
T PRK13009 77 AWTSPPFEPTI-RDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKI 155 (375)
T ss_pred cCCCCCCCcEE-ECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCC
Confidence 89999999998 99999999999999999999999999998887788999999999999865458988876421 1235
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCC
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 264 (356)
+++++.+.....+. ...++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+..+..... . ..-.
T Consensus 156 d~~i~~ep~~~~~~-~~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~----~---~~~~ 227 (375)
T PRK13009 156 DYCIVGEPTSTERL-GDVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEG----N---EFFP 227 (375)
T ss_pred CEEEEcCCCcccCC-CCeEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCC----C---ccCC
Confidence 66665542211111 1257889999999999999999999999988 999999999999876432100 0 0112
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
..+++++.+++|.. ..|+||++|++.+|+|++|.++.+++.++|++.+.. .++++++.
T Consensus 228 ~~~~~i~~i~~G~~-----~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~--~~~~~~~~ 285 (375)
T PRK13009 228 PTSLQITNIDAGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK--HGLDYTLE 285 (375)
T ss_pred CceEEEEEEecCCC-----CCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHh--cCCCeEEE
Confidence 35788999998742 679999999999999999999999999999987763 23444443
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=1.4e-42 Score=336.75 Aligned_cols=277 Identities=17% Similarity=0.258 Sum_probs=229.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecC-CCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~-~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
+...++++++|++|++|||.++. .++.++++||.++|+++|++++.++..+ ..+|+++.++|++ .|+|+|+||+||
T Consensus 33 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~--~~~ill~~H~D~ 110 (410)
T PRK06133 33 QQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTG--KRRIMLIAHMDT 110 (410)
T ss_pred HHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCC--CceEEEEeecCc
Confidence 34667999999999999998643 2346899999999999999987655432 4579999997753 489999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 102 vp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
||++ ..|+.+||. + ++|++||||++|||++++++|.+++.|++.+..++++|.|+|+++||.|+ .|+++++++..
T Consensus 111 Vp~~-~~w~~~Pf~--~-~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~G~~~~~~~~~ 185 (410)
T PRK06133 111 VYLP-GMLAKQPFR--I-DGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGS-PGSRELIAELA 185 (410)
T ss_pred cCCC-CccCCCCEE--E-ECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCC-ccHHHHHHHHh
Confidence 9986 469999997 5 89999999999999999999999999999887778999999999999986 69999997633
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
.+.+.+++.+.+. +. ..++++++|..+++++++|+++||+ .|+.+ ||+..+++++..+.++...
T Consensus 186 -~~~d~~i~~ep~~--~~--~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~~--------- 251 (410)
T PRK06133 186 -AQHDVVFSCEPGR--AK--DALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGDP--------- 251 (410)
T ss_pred -ccCCEEEEeCCCC--CC--CCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccCC---------
Confidence 3457777765321 11 2678899999999999999999985 78888 9999999999888765321
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
....+++++.++||. +.|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++..
T Consensus 252 ---~~~~t~~~~~i~gG~------~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~ 314 (410)
T PRK06133 252 ---AKGTTLNWTVAKAGT------NRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKNKLVPDTEVTLRF 314 (410)
T ss_pred ---CCCeEEEeeEEECCC------CCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhccCCCCeEEEEEe
Confidence 123688999999998 999999999999999999999999999999988763 23566666643
No 19
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=4.6e-42 Score=329.14 Aligned_cols=277 Identities=20% Similarity=0.289 Sum_probs=222.5
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-CCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKW 109 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~-~~w 109 (356)
+++|++|++|||+ +++|.++++||.++|+++||+++.++. ++.+|+++.+ |. ..|+|+|++|+||||+++ ++|
T Consensus 2 ~~~l~~lv~ips~--s~~e~~~~~~i~~~l~~~G~~~~~~~~-~~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W 75 (370)
T TIGR01246 2 TELAKELISRPSV--TPNDAGCQDIIAERLEKLGFEIEWMHF-GDTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQW 75 (370)
T ss_pred hHHHHHHhcCCCC--CcchHHHHHHHHHHHHHCCCEEEEEec-CCCceEEEEe-cC--CCcEEEEEccccccCCCCcccc
Confidence 6889999999997 467899999999999999999886544 3568999986 44 348999999999999976 789
Q ss_pred CCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc--ccCCce
Q 018435 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNV 187 (356)
Q Consensus 110 ~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~~~~~ 187 (356)
+++||++.+ ++|++||||++|||+++++++.|++.+++.+..++++|+|+|+++||.++..|++.+++... ....|+
T Consensus 76 ~~~p~~~~~-~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~ 154 (370)
T TIGR01246 76 SSPPFEPVE-RDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDY 154 (370)
T ss_pred ccCCCCcEE-ECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCE
Confidence 999999988 89999999999999999999999999988877788999999999999875458888875311 113566
Q ss_pred EEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCce
Q 018435 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (356)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
+++.+.+...+. ...++++++|..+++++++|+++|++.|+.+ ||+..++.++..+..+... .. ...-...
T Consensus 155 ~i~~ep~~~~~~-~~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~------~~-~~~~~~~ 226 (370)
T TIGR01246 155 CIVGEPSSVKKL-GDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWD------EG-NEFFPPT 226 (370)
T ss_pred EEEcCCCCcccC-CceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhc------cC-CccCCCC
Confidence 665543211111 1248889999999999999999999999988 9999999999888754221 00 0011246
Q ss_pred eeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 267 ~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
+++++.+++|.. ..|+||++|++++|+|++|.++.+++.++|++.+.. .++++++.
T Consensus 227 t~~i~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~~~~~v~ 282 (370)
T TIGR01246 227 SLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ--HGLDYDLE 282 (370)
T ss_pred ceEeeeeecCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH--cCCCEEEE
Confidence 899999998851 579999999999999999999999999999987753 23444443
No 20
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=340.29 Aligned_cols=293 Identities=27% Similarity=0.388 Sum_probs=227.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcCh-------hHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEE
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDY-------TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e-------~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~ 95 (356)
+..+.++++++|++|++|||+|+..+. .++++||.++++.+|+.++.+... ..|+++.++|++++.|+|+|
T Consensus 39 ~~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~--~~~vv~~~~g~~~~~~~ill 116 (486)
T PRK08262 39 VAVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG--GHSLLYTWKGSDPSLKPIVL 116 (486)
T ss_pred CcCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC--CccEEEEEECCCCCCCeEEE
Confidence 345689999999999999998653222 358999999999999987765543 25788888777654589999
Q ss_pred EeecccCCCCC---CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcccc
Q 018435 96 NSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (356)
Q Consensus 96 ~aH~Dtvp~~~---~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (356)
+||+||||+++ ..|+++||++++ +||++||||++||||+++++|.|++.|++.+..++++|.|+|+++||+|+ .|
T Consensus 117 ~gH~DvVp~~~~~~~~W~~~Pf~~~~-~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~-~G 194 (486)
T PRK08262 117 MAHQDVVPVAPGTEGDWTHPPFSGVI-ADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGG-LG 194 (486)
T ss_pred ECcccccCCCCCCcccCccCCCceEe-eCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCC-cC
Confidence 99999999963 579999999999 99999999999999999999999999999887788999999999999987 59
Q ss_pred HHHHhccccccCCceEEEEecC----------ccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHH
Q 018435 173 AEKFADSHVFNSLNVGIVLDEG----------LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIE 242 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g----------~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~ 242 (356)
++++++.......+..++++.+ ...|+ ..+.++++|..+++|+++|+++||+.|+..||+..+++++.
T Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~--~~i~~~~kG~~~~~i~v~G~~~Hss~p~~~nai~~l~~~l~ 272 (486)
T PRK08262 195 ARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPV--ALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLARALT 272 (486)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceE--EeeEEeeeeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 9988864211112223333321 11232 25778899999999999999999999866899999999999
Q ss_pred HHHcchhh---------hHHHHHh---------------------------cccccCCceeeeEeeeecCCCCCCCcccc
Q 018435 243 SVRRFRAS---------QFDLVKA---------------------------GLKAEGEVVSVNMAFLKAGTPSPNGFVMN 286 (356)
Q Consensus 243 ~i~~~~~~---------~~~~~~~---------------------------~~~~~~~~~~v~~~~i~~g~~~~~~~~~n 286 (356)
.+.+++.. .++.+.. ........++++++.++||. ..|
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~------~~N 346 (486)
T PRK08262 273 RLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSP------KDN 346 (486)
T ss_pred HHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCC------ccc
Confidence 98864210 1111100 00001124789999999987 899
Q ss_pred ccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 287 vip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
+||++|++++|+|++|.++.+++.++|++.+. .. ++++++.
T Consensus 347 vIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~-~~-~~~v~~~ 387 (486)
T PRK08262 347 VLPQRATATVNFRILPGDSVESVLAHVRRAVA-DD-RVEIEVL 387 (486)
T ss_pred cCCCccEEEEEEEeCCCCCHHHHHHHHHHHhc-cC-ceEEEEe
Confidence 99999999999999999999999999998776 22 5566554
No 21
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=5e-42 Score=336.68 Aligned_cols=296 Identities=19% Similarity=0.256 Sum_probs=229.5
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCC-ceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~-~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
++...++++++|++|++|||+++. .++.+++++|.++|+++|+ +++.++ .++.+|+++.++++. ..|+|+|+|
T Consensus 13 i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~nl~a~~~~~~-~~~~lll~g 90 (449)
T PRK07907 13 VAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-ADGAPAVIGTRPAPP-GAPTVLLYA 90 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-cCCCCEEEEEecCCC-CCCEEEEEc
Confidence 556778999999999999998743 2467999999999999998 677655 457899999997653 358999999
Q ss_pred ecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHH
Q 018435 98 HTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (356)
Q Consensus 98 H~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (356)
|+||||+++ .+|+++||++++ +||+|||||++|||++++++|+|+++| +..++++|.|+++++||+|+ .|++++
T Consensus 91 H~DvVp~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~-~g~~~~ 165 (449)
T PRK07907 91 HHDVQPPGDPDAWDSPPFELTE-RDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGS-PSLERL 165 (449)
T ss_pred ccCCCCCCCccccCCCCceeEE-ECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCC-ccHHHH
Confidence 999999975 689999999999 999999999999999999999999998 33567899999999999997 699999
Q ss_pred hcccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEE--ecCCccCCC-CCC-CHHHHHHHHHHHHHcchhh-
Q 018435 177 ADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKAR--GAPGHGAKL-YDN-SAMENLFKSIESVRRFRAS- 250 (356)
Q Consensus 177 ~~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~--G~~~Hs~~p-~~g-nai~~~~~~~~~i~~~~~~- 250 (356)
+++.. ....|.+++.+.+... .+.+.+.++++|..+++++++ |+++||+.+ ..+ ||+..+++++.+|.+....
T Consensus 166 l~~~~~~~~~d~~iv~E~~~~~-~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~~ 244 (449)
T PRK07907 166 LAEHPDLLAADVIVIADSGNWS-VGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGNV 244 (449)
T ss_pred HHhchHhhcCCEEEEecCCcCC-CCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCCE
Confidence 88631 1235777887654321 122468999999999999988 899999975 445 9999999999998754210
Q ss_pred ----------h----HH--HHHh--cc-------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEe
Q 018435 251 ----------Q----FD--LVKA--GL-------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIR 299 (356)
Q Consensus 251 ----------~----~~--~~~~--~~-------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR 299 (356)
+ ++ ..+. .. ......++++++.++++. ++.+.|+||++|++++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~---~g~~~nvIP~~a~~~~diR 321 (449)
T PRK07907 245 AVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPP---VAGASNALPPSARARLSLR 321 (449)
T ss_pred eCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCC---CCCCCCEecCceEEEEEEE
Confidence 0 00 0000 00 000124688888888642 2338899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhccC-CCCceEEEE
Q 018435 300 VPPTTDAESLERRIVEEWAPA-SRNMTFEVV 329 (356)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 329 (356)
+.|.++.+++.+.|++.+... ..+.++++.
T Consensus 322 ~~p~~~~e~v~~~l~~~l~~~~~~~~~~~~~ 352 (449)
T PRK07907 322 VAPGQDAAEAQDALVAHLEAHAPWGAHVTVE 352 (449)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999999999999999877632 224455543
No 22
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=5e-42 Score=338.04 Aligned_cols=303 Identities=20% Similarity=0.244 Sum_probs=234.5
Q ss_pred cCCCCChhHHHHHHHhhhcccCCCCCc----ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 21 SSPAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
.++....++++++|++|++|||+|+.. ++.+++++|.++|+++|++++.++. .+.+||++.+.|+++..|+|+|+
T Consensus 10 ~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~-~~~~~l~a~~~g~~~~~~~lll~ 88 (464)
T PRK09104 10 DHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDT-PGHPMVVAHHEGPTGDAPHVLFY 88 (464)
T ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEec-CCCCEEEEEecCCCCCCCEEEEE
Confidence 344566899999999999999986432 2478899999999999999887654 36789999998765556899999
Q ss_pred eecccCCCCC-CCCCCCCCCeeeCCCC-----eEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc
Q 018435 97 SHTDVVPSEP-SKWSHHPFGAHLDSQG-----NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (356)
Q Consensus 97 aH~Dtvp~~~-~~w~~~P~~~~~~~~g-----~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (356)
||+||||+++ ++|+++||++++ +++ ++||||++|||++++++|+|++.|++.+..++++|.|+|+++||.|+
T Consensus 89 gH~DvVp~~~~~~W~~~Pf~~~~-~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~- 166 (464)
T PRK09104 89 GHYDVQPVDPLDLWESPPFEPRI-KETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGS- 166 (464)
T ss_pred ecccCCCCCCcccCCCCCCcceE-ecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCC-
Confidence 9999999976 679999999988 654 69999999999999999999999998776778899999999999997
Q ss_pred ccHHHHhccc-cccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEe--cCCccCC-CCCC-CHHHHHHHHHHHHH
Q 018435 171 DGAEKFADSH-VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAK-LYDN-SAMENLFKSIESVR 245 (356)
Q Consensus 171 ~G~~~~~~~~-~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G--~~~Hs~~-p~~g-nai~~~~~~~~~i~ 245 (356)
.|+..++.+. .....+++++.+.+...+. ...++++++|..+++++++| +++||+. |..+ ||+..+++++..+.
T Consensus 167 ~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~-~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~ 245 (464)
T PRK09104 167 PSLVPFLEANAEELKADVALVCDTGMWDRE-TPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLH 245 (464)
T ss_pred ccHHHHHHhhHHhcCCCEEEEeCCCCCCCC-CeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhcc
Confidence 5888887652 1123577787775432222 34789999999999999999 6899996 4667 99999999999986
Q ss_pred cchhh-------------------hHHH-------H-Hh-ccc------------ccCCceeeeEeeeecCCCCCCCccc
Q 018435 246 RFRAS-------------------QFDL-------V-KA-GLK------------AEGEVVSVNMAFLKAGTPSPNGFVM 285 (356)
Q Consensus 246 ~~~~~-------------------~~~~-------~-~~-~~~------------~~~~~~~v~~~~i~~g~~~~~~~~~ 285 (356)
+.... .++. . .. ++. .....++++++.++||.. ++.+.
T Consensus 246 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~ 323 (464)
T PRK09104 246 DETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYT--GEGFK 323 (464)
T ss_pred CCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCC--CCCCc
Confidence 53110 0000 0 00 000 001236889999998862 11257
Q ss_pred cccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEE
Q 018435 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVV 329 (356)
Q Consensus 286 nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 329 (356)
|+||++|++.+|+|++|.++.+++.++|++.+.. ...+.++++.
T Consensus 324 nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~~~ 368 (464)
T PRK09104 324 TVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVEFH 368 (464)
T ss_pred cEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9999999999999999999999999999987762 1234555554
No 23
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.1e-41 Score=329.08 Aligned_cols=283 Identities=23% Similarity=0.352 Sum_probs=227.0
Q ss_pred CChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecCC--------CceEEEEecCCCCCCCcEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKN--------KPLILLKWPGSNPQLPSILL 95 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~~--------~~nv~~~~~g~~~~~~~il~ 95 (356)
...++++++|++|++|||+|++ .++.++++||.++|+++|++++..+..++ .+|+++.. +.+ .|+|+|
T Consensus 3 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ill 79 (394)
T PRK08651 3 AMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GSG--NPHLHF 79 (394)
T ss_pred hhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CCC--CceEEE
Confidence 4568999999999999999744 46789999999999999999887654432 25677765 433 389999
Q ss_pred EeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHH
Q 018435 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (356)
+|||||||+++..|+.+||++.+ ++|++||||++|||++++++|++++.|++.+ +++|+|+|+++||+|+ .|+++
T Consensus 80 ~~HlDtvp~~~~~~~~~Pf~~~~-~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~-~G~~~ 154 (394)
T PRK08651 80 NGHYDVVPPGEGWSVNVPFEPKV-KDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGG-TGTGY 154 (394)
T ss_pred EeeeeeecCCCCccccCCCCcEE-ECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccc-hhHHH
Confidence 99999999975446999999998 8999999999999999999999999998775 6899999999999986 69999
Q ss_pred HhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHH
Q 018435 176 FADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDL 254 (356)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~ 254 (356)
+++++.++ .+.+++.+ |++...++++++|..+++|+++|+++|++.|+.+ ||+.++++++..|.++.......
T Consensus 155 ~~~~~~~~-~d~~i~~~-----~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~ 228 (394)
T PRK08651 155 LVEEGKVT-PDYVIVGE-----PSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSK 228 (394)
T ss_pred HHhccCCC-CCEEEEec-----CCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 99876443 46666654 3322268899999999999999999999999888 99999999999997653211100
Q ss_pred HHhccc-ccCCceeeeEee--eecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 255 VKAGLK-AEGEVVSVNMAF--LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 255 ~~~~~~-~~~~~~~v~~~~--i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
..+. ......+++++. ++||. +.|+||++|++.+|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 229 --~~~~~~~~~~~~~~ig~~~i~gG~------~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~i~ 300 (394)
T PRK08651 229 --YEYDDERGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVEFE 300 (394)
T ss_pred --ccccccccCCCceeecceeeeCCC------CCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCeeEE
Confidence 0000 012235677777 88887 999999999999999999999999999999977762 3345555554
No 24
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3e-41 Score=322.01 Aligned_cols=261 Identities=19% Similarity=0.239 Sum_probs=213.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCC--cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 24 AKSDDSIIERFRAYLQIDTSQPN--PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~--~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
....++++++|++|++|||.+++ .++.++++||.++|+ |++++.++...+.+|+++.. | .|+|+|+||+||
T Consensus 2 ~~~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g----~~~lll~gH~Dt 74 (364)
T PRK08737 2 TDLLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G----TPKYLFNVHLDT 74 (364)
T ss_pred CccHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C----CCeEEEEeeeCC
Confidence 34567899999999999998653 347899999999996 99888766555678999863 4 268999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 102 vp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
||++ ..|+.+||.+.+ ++|++||||++|||++++++|.|++. +.++|.|+|+++||.|+..|++.+++.+.
T Consensus 75 Vp~~-~~w~~~Pf~~~~-~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~ 145 (364)
T PRK08737 75 VPDS-PHWSADPHVMRR-TDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI 145 (364)
T ss_pred CCCC-CCCCCCCCceEE-ECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC
Confidence 9997 489999999988 89999999999999999999999863 25689999999999986458888888652
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCC-CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p-~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
..+.+++. +|+. ..++.+++|..+++|+++|+++|+|.| +.| ||+..+++++.++.++..... ...+
T Consensus 146 --~~~~~iv~-----Ept~-~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~---~~~~ 214 (364)
T PRK08737 146 --PYEAVLVA-----EPTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLA---HARF 214 (364)
T ss_pred --CCCEEEEc-----CCCC-ceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhh---hhcc
Confidence 35666554 4663 578999999999999999999999998 477 999999999887654321110 0111
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.. ....+++++.++||. +.|+||++|++++|+|+.|.++.+++.++|++.+.
T Consensus 215 ~~-~~~~t~~vg~i~GG~------~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~ 266 (364)
T PRK08737 215 GG-LTGLRFNIGRVEGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAE 266 (364)
T ss_pred CC-CCCCceEEeeEecCC------CCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHH
Confidence 11 124699999999998 99999999999999999999999999999986654
No 25
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=2.2e-41 Score=327.05 Aligned_cols=279 Identities=15% Similarity=0.139 Sum_probs=223.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
+++..+++++++++|++|||+ +++|.++++||.++|+++|+++..+ +..+|+++.+ |.+ .|+|+|+||+|||
T Consensus 8 i~~~~~~~~~~~~~lv~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~n~~~~~-g~~--~~~l~l~~H~DtV 79 (395)
T TIGR03320 8 AKKYRGDMIRFLRDLVAIPSE--SGDEKRVAERIKEEMEKLGFDKVEI---DPMGNVLGYI-GHG--PKLIAMDAHIDTV 79 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCC--CCchHHHHHHHHHHHHHhCCcEEEE---CCCCCEEEEe-CCC--CcEEEEEeccccc
Confidence 344568899999999999997 5788999999999999999974322 3457899988 542 3789999999999
Q ss_pred CCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 103 p~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
|+++ .+|+++||++.+ +||++||||++|||++++++|.|++.|++.+..++.++.|+++++||.++..+.+++++...
T Consensus 80 p~~~~~~w~~~Pf~~~~-~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03320 80 GIGDSKQWQFDPYEGYE-DEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDG 158 (395)
T ss_pred CCCCccccccCCCceEE-ECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcC
Confidence 9875 689999999998 89999999999999999999999999999887778899999999999753224566665533
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+ ..+.+++. +|+ ...++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++.... ..+.
T Consensus 159 ~-~~d~~iv~-----ep~-~~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~---~~~~-- 226 (395)
T TIGR03320 159 I-KPEFVVIT-----EPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL---VEDP-- 226 (395)
T ss_pred C-CCCEEEEc-----CCC-ccceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhh---cCCc--
Confidence 3 35666664 354 3578999999999999999999999999999 99999999999998764310 0011
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
.....+++++.+.+|.. +.|+||++|++.+|+|++|.++.+++.++|++.+.....++++++
T Consensus 227 -~~~~~t~~v~~i~~g~~-----~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~ 288 (395)
T TIGR03320 227 -FLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAKVEM 288 (395)
T ss_pred -ccCcCceeeeeeecCCC-----CcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhhcCCCceEee
Confidence 11235888888887642 789999999999999999999999999999977642222344443
No 26
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=7.4e-41 Score=320.92 Aligned_cols=273 Identities=16% Similarity=0.254 Sum_probs=224.8
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcCh---hHHHHHHHHHHHHCCCceEEEeecCC-CceEEEEecCCCCCCCcEEEEee
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDY---TNASKFILAQAEALSLESQTLEFAKN-KPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e---~~~~~~l~~~l~~~g~~~~~~~~~~~-~~nv~~~~~g~~~~~~~il~~aH 98 (356)
.....++++++|++|++|||.+ +++ .++++|+.++|+++|++++.++..++ .+|+++.+++.+++.|+|+|+||
T Consensus 6 ~~~~~~~~~~~l~~Lv~i~S~s--~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH 83 (376)
T PRK07473 6 LPFDSEAMLAGLRPWVECESPT--WDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGH 83 (376)
T ss_pred CCcCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEec
Confidence 4556889999999999999974 444 47788999999999999887654444 35899998754444589999999
Q ss_pred cccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhc
Q 018435 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (356)
Q Consensus 99 ~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (356)
|||||+. ..|..+||. + ++|++||||++|||++++++|.|++.|++.+..++.+|.|+|+++||+|+ .|++.+++
T Consensus 84 ~DtV~~~-~~~~~~p~~--~-~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~g~~~~~~ 158 (376)
T PRK07473 84 MDTVHPV-GTLEKLPWR--R-EGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGT-PSTRDLIE 158 (376)
T ss_pred CCCCCCC-CCccCCCeE--E-ECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCC-ccHHHHHH
Confidence 9999875 469889995 5 78999999999999999999999999999887777899999999999987 69999998
Q ss_pred cccccCCceEEEEecCccCcCC-cceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHH
Q 018435 179 SHVFNSLNVGIVLDEGLASTTE-DYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~g~~~p~~-~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~ 255 (356)
+... ..+++++.+ |+. ...++.+++|..+++|+++|+++|++ .|+.+ ||+..+++++.+|.++..
T Consensus 159 ~~~~-~~d~~iv~e-----p~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------ 226 (376)
T PRK07473 159 AEAA-RNKYVLVPE-----PGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------ 226 (376)
T ss_pred Hhhc-cCCEEEEeC-----CCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------
Confidence 6433 357777775 332 23689999999999999999999986 68888 999999999999876532
Q ss_pred HhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 256 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
...+++++.++||. ..|+||++|++.+++|.......+.+.+++.+.+. ...++++++.
T Consensus 227 --------~~~~~~vg~i~gg~------~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~ 285 (376)
T PRK07473 227 --------EDCTFSVGIVHGGQ------WVNCVATTCTGEALSMAKRQADLDRGVARMLALSG-TEDDVTFTVT 285 (376)
T ss_pred --------CCceEeEeeEEcCC------CCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC-cCCCeEEEEE
Confidence 12588999999997 89999999999999998887778888877766554 3456666664
No 27
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=4.7e-41 Score=325.15 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=228.0
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
.++...+++++++++|++|||. +++|.+++++|.++|+++|+++..+ +..+|+++.+.+. .|+|+|++|+||
T Consensus 9 ~~~~~~~~~~~~l~~lv~ips~--s~~e~~~a~~l~~~l~~~G~~~~~~---~~~~n~~a~~~~~---~~~i~~~~H~Dt 80 (399)
T PRK13004 9 LAEKYKADMTRFLRDLIRIPSE--SGDEKRVVKRIKEEMEKVGFDKVEI---DPMGNVLGYIGHG---KKLIAFDAHIDT 80 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCcEEEE---cCCCeEEEEECCC---CcEEEEEeccCc
Confidence 3456678899999999999997 5789999999999999999975433 4567999988553 289999999999
Q ss_pred CCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc
Q 018435 102 VPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (356)
Q Consensus 102 vp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (356)
||+++ ++|+.+||++.+ ++|++||||++|||++++++|.|++.|++.+..++++|.++|+++||.++..|+++++++.
T Consensus 81 Vp~~~~~~w~~~P~~~~~-~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 81 VGIGDIKNWDFDPFEGEE-DDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred cCCCChhhcccCCCccEE-ECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 99865 689999999988 8999999999999999999999999999988878899999999999964324778888764
Q ss_pred cccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 181 ~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
.+ ..+++++.+ |+ ...++++++|..+++|+++|+++|++.|+.+ ||+..+++++..+..+..... ..
T Consensus 160 ~~-~~d~~i~~e-----~~-~~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~-- 227 (399)
T PRK13004 160 KI-KPDFVVITE-----PT-DLNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLK---ED-- 227 (399)
T ss_pred CC-CCCEEEEcc-----CC-CCceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccc---cC--
Confidence 44 357777653 43 3578899999999999999999999999998 999999999999987643200 00
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
......+++++.+.+|.+ +.|+||++|++++|+|++|.++.+++.++|++..+....++++++
T Consensus 228 -~~~~~~~~~v~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~v~~ 290 (399)
T PRK13004 228 -PFLGKGTLTVSDIFSTSP-----SRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAVKKANAKVSM 290 (399)
T ss_pred -CcCCCceEEEeeeecCCC-----CCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhhccccceEEE
Confidence 011235778888876531 899999999999999999999999999999876432233444443
No 28
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=327.31 Aligned_cols=275 Identities=20% Similarity=0.268 Sum_probs=226.3
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC-cChhHHHHHHHHHHHHCCCceEEEeecC--------------CCceEEEEecCCC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK--------------NKPLILLKWPGSN 87 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~~~~~~--------------~~~nv~~~~~g~~ 87 (356)
++...+++++.|++|++|||.+.. .++.++++||.++|+++|++++.++..+ ..+||++++++..
T Consensus 12 ~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~ 91 (402)
T PRK07338 12 IDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEA 91 (402)
T ss_pred HhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCCC
Confidence 556678999999999999997532 2256899999999999999988654321 1269999996543
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCee--eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAH--LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~--~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (356)
.++|+|+||+||||+++ +||++. + +||++||||++|||++++++|+|++.|++.+..+++++.|+|+++|
T Consensus 92 --~~~lll~gH~DvVp~~~-----~Pf~~~~~~-~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~dE 163 (402)
T PRK07338 92 --PRQVLLTGHMDTVFPAD-----HPFQTLSWL-DDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLINPDE 163 (402)
T ss_pred --CccEEEEeecCccCCCC-----CcccCCeEe-eCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCc
Confidence 25899999999999853 799975 6 8999999999999999999999999999888777889999999999
Q ss_pred ccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC-CCCC-CHHHHHHHHHHH
Q 018435 166 EIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDN-SAMENLFKSIES 243 (356)
Q Consensus 166 E~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~-p~~g-nai~~~~~~~~~ 243 (356)
|+|+ .|++.++++.. ...+++++++.+. + ...+..+++|..+++|+++|+++|++. |+.+ ||+..+++++..
T Consensus 164 E~g~-~g~~~~~~~~~-~~~~~~i~~ep~~--~--~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~~ 237 (402)
T PRK07338 164 EIGS-PASAPLLAELA-RGKHAALTYEPAL--P--DGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALA 237 (402)
T ss_pred ccCC-hhhHHHHHHHh-ccCcEEEEecCCC--C--CCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHHHH
Confidence 9987 58888888643 2346677775321 1 236788999999999999999999996 7778 999999999999
Q ss_pred HHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CC
Q 018435 244 VRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--AS 321 (356)
Q Consensus 244 i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~ 321 (356)
+.++... ....+++++.++||. +.|+||++|++++|+|+.|.++.+++.++|++.+.. ..
T Consensus 238 l~~l~~~------------~~~~t~~vg~i~gG~------~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~~ 299 (402)
T PRK07338 238 LHALNGQ------------RDGVTVNVAKIDGGG------PLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQR 299 (402)
T ss_pred HHhhhcc------------CCCcEEEEEEEecCC------CCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccccC
Confidence 8776431 123689999999997 999999999999999999999999999999987763 24
Q ss_pred CCceEEEE
Q 018435 322 RNMTFEVV 329 (356)
Q Consensus 322 ~~~~~~~~ 329 (356)
.++++++.
T Consensus 300 ~~~~~~~~ 307 (402)
T PRK07338 300 HGVSLHLH 307 (402)
T ss_pred CCeEEEEE
Confidence 56777664
No 29
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=4.7e-41 Score=324.73 Aligned_cols=279 Identities=14% Similarity=0.133 Sum_probs=224.6
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv 102 (356)
+++..+++++++++|++|||+ +++|.+++++|.++|+++|+++..+ +..+|+++.+ |.+ .++|+|+||+|||
T Consensus 8 ~~~~~~~~~~~l~~Lv~ips~--s~~e~~~~~~l~~~l~~~g~~~~~~---~~~~~v~~~~-g~~--~~~l~l~~H~DtV 79 (395)
T TIGR03526 8 AEKYRGDMIRFLRDLVAIPSE--SGDEGRVALRIKQEMEKLGFDKVEI---DPMGNVLGYI-GHG--PKLIAMDAHIDTV 79 (395)
T ss_pred HHHHHHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCceEEE---cCCCcEEEEe-CCC--CCEEEEEeecccc
Confidence 334557899999999999997 5789999999999999999975322 3457899988 543 3789999999999
Q ss_pred CCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 103 p~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
|+++ .+|+++||.+.+ ++|++||||++|||++++++|.|++.|++.+..+++++.|+++++||.++..|..++++++.
T Consensus 80 p~~~~~~W~~~Pf~~~~-~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYE-DEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDK 158 (395)
T ss_pred CCCCcccccCCCCceEE-ECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccC
Confidence 9875 689999999998 89999999999999999999999999999887677899999999999432136677776544
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+. .+.+++. +|+ ...+..+++|..+++|+++|+++|++.|+.+ ||+..+++++..+.++..... .+.
T Consensus 159 ~~-~d~~i~~-----ep~-~~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~---~~~-- 226 (395)
T TIGR03526 159 IK-PEFVVIT-----EPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLV---EDP-- 226 (395)
T ss_pred CC-CCEEEec-----CCC-CceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhc---CCc--
Confidence 43 5666654 354 3578999999999999999999999999999 999999999999887643200 011
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEV 328 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (356)
.....+++++.+++|.. +.|+||++|++++|+|++|.++.+++.++|++.+.....++++++
T Consensus 227 -~~~~~~~~v~~i~~g~~-----~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 288 (395)
T TIGR03526 227 -FLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAEVEM 288 (395)
T ss_pred -ccCccceeeeeeecCCC-----CCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhcCCcceEEE
Confidence 11236888999987632 789999999999999999999999999999987652222344443
No 30
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=327.42 Aligned_cols=296 Identities=19% Similarity=0.191 Sum_probs=223.6
Q ss_pred hHHHHHHHhhhcccCCCCC-cChhHHHHHHH----HHHHHCCCceEEEeec--CCCceEEEEecCCCCCCCcEEEEeecc
Q 018435 28 DSIIERFRAYLQIDTSQPN-PDYTNASKFIL----AQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHTD 100 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~----~~l~~~g~~~~~~~~~--~~~~nv~~~~~g~~~~~~~il~~aH~D 100 (356)
++++++|++|++|||+|+. .++.+++++|. ++|+++|++++.++.. .+++||++.+.+.. +.|+|+|+||+|
T Consensus 17 ~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~-~~~~lll~gH~D 95 (469)
T PRK07079 17 GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDD-ALPTVLIYGHGD 95 (469)
T ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCC-CCCEEEEEcccC
Confidence 5799999999999998753 34556777764 5899999999876643 46789999985543 348999999999
Q ss_pred cCCCCCCCCC--CCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc-CCCCcccEEEEEeeccccCccccHHHHh
Q 018435 101 VVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-GFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 101 tvp~~~~~w~--~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~-~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
|||+++++|+ ++||++++ +||++||||++|||++++++|+|++.|.+. +..+.++|.|+++++||+|+ .|+++++
T Consensus 96 vVp~~~~~W~~~~~Pf~~~~-~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~-~G~~~l~ 173 (469)
T PRK07079 96 VVRGYDEQWREGLSPWTLTE-EGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEIGS-PGLAEVC 173 (469)
T ss_pred CCCCChHHhcccCCCCcccc-cCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCC-ccHHHHH
Confidence 9998767899 59999999 999999999999999999999999998753 46788999999999999997 6999999
Q ss_pred cccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEec--CCccCCCCC-C-CHHHHHHHHHHHHHcchh---
Q 018435 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA--PGHGAKLYD-N-SAMENLFKSIESVRRFRA--- 249 (356)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~--~~Hs~~p~~-g-nai~~~~~~~~~i~~~~~--- 249 (356)
++.. ....|.+++.+.+...++ ...++++++|..+++|+++|+ +.||+.... + ||+..++.++..+.+...
T Consensus 174 ~~~~~~~~~d~~iv~e~~~~~~~-~~~i~~g~kG~~~~~v~v~G~~~~~hs~~~~g~~~nai~~l~~ai~~l~~~~~~~~ 252 (469)
T PRK07079 174 RQHREALAADVLIASDGPRLSAE-RPTLFLGSRGAVNFRLRVNLRDGAHHSGNWGGLLRNPGTVLAHAIASLVDARGRIQ 252 (469)
T ss_pred HHhHHhcCCCEEEEeCCCccCCC-CeEEEEecceEEEEEEEEeeCCCCCCCCccccccCCHHHHHHHHHHHhCCCCCCEe
Confidence 8642 123577777654432233 356999999999999999997 456664222 2 999999999988754210
Q ss_pred -----------hhHHHHHh---ccc-------------------ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEE
Q 018435 250 -----------SQFDLVKA---GLK-------------------AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGF 296 (356)
Q Consensus 250 -----------~~~~~~~~---~~~-------------------~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~ 296 (356)
.....+.. ... ..-..+++|++.++||.. ..+.|+||++|++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~---~~~~NvVP~~a~~~v 329 (469)
T PRK07079 253 VPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNP---DAPVNAIPGSARAVC 329 (469)
T ss_pred cCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCC---CCcceEecCceEEEE
Confidence 00000000 000 001135889999998841 115899999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHhcc-CCCCceEEEEe
Q 018435 297 DIRVPPTTDAESLERRIVEEWAP-ASRNMTFEVVI 330 (356)
Q Consensus 297 diR~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 330 (356)
|+|++|.++.+++.++|++.+.. ...++++++..
T Consensus 330 diR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~~~ 364 (469)
T PRK07079 330 QLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTVER 364 (469)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 99999999999999999988863 22345555443
No 31
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=6.3e-40 Score=314.25 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=206.3
Q ss_pred HHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC---CC
Q 018435 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SK 108 (356)
Q Consensus 33 ~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~---~~ 108 (356)
+|++|++|||+ +++|.+++++|.++|+++|+. ++. .. ..+||++++.+. + .++|+|+|||||||+++ ..
T Consensus 1 ll~~Lv~ipS~--s~~e~~~~~~i~~~l~~~g~~~~~~-~~--~~~nvva~~~~~-~-~~~l~l~gH~DtVp~~~~~~~~ 73 (373)
T TIGR01900 1 LLQQIMDIFSP--SDHEGPIADEIEAALNNLELEGLEV-FR--FGDNVLARTDFG-K-ASRVILAGHIDTVPIADNFPPK 73 (373)
T ss_pred ChHHHhCCCCC--CchHHHHHHHHHHHHhhccccCceE-EE--ECCEEEEecCCC-C-CCeEEEeCccccccCCCCChhh
Confidence 47899999997 578999999999999999653 221 11 134899998432 2 47899999999999864 46
Q ss_pred CCCCCC--------CeeeCCCCeEEecCcccchHHHHHHHHHHHHHHH--cCCCCcccEEEEEeeccccCc-cccHHHHh
Q 018435 109 WSHHPF--------GAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA--SGFQPVRSVYLSFVPDEEIGG-HDGAEKFA 177 (356)
Q Consensus 109 w~~~P~--------~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~--~~~~~~~~i~~~~~~~EE~g~-~~G~~~~~ 177 (356)
|+.+|| .+.+ +||++||||++|||++++++|+|++.|++ .+..++++|.|+|+++||+|+ ..|+..++
T Consensus 74 W~~~p~~~~~~~~~~~~~-~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~ 152 (373)
T TIGR01900 74 WLEPGDSLIREEIAHAHP-EDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIR 152 (373)
T ss_pred hccCcccccccccccccc-cCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHH
Confidence 998775 4567 89999999999999999999999999964 345678999999999999863 24899988
Q ss_pred cccc-ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHH
Q 018435 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (356)
Q Consensus 178 ~~~~-~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~ 255 (356)
++.. +...+.+++. +|++ ..++++++|..+++|+++|+++|++.|+.+ ||+..+++++..|.++......
T Consensus 153 ~~~~~~~~~d~~iv~-----Ept~-~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~-- 224 (373)
T TIGR01900 153 DAHPDWLAADFAIIG-----EPTG-GGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVN-- 224 (373)
T ss_pred HhCcccccCCEEEEE-----CCCC-CcccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccc--
Confidence 7632 2235666665 3553 478999999999999999999999999999 9999999999999775421100
Q ss_pred HhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHH
Q 018435 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315 (356)
Q Consensus 256 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~ 315 (356)
........+++++.++||. +.|+||++|++.+|+|+.|.++.+++.++|++
T Consensus 225 ---~~~~~~~~t~~v~~I~GG~------~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~ 275 (373)
T TIGR01900 225 ---IDGLDYREGLNATFCEGGK------ANNVIPDEARMHLNFRFAPDKDLAEAKALMMG 275 (373)
T ss_pred ---ccCCcccceEEEEEEeCCC------CCcccCCeEEEEEEEecCCCcCHHHHHHHHHh
Confidence 0011123689999999997 99999999999999999999999999999853
No 32
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=309.81 Aligned_cols=289 Identities=25% Similarity=0.404 Sum_probs=225.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCC--CceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKN--KPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~--~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
..++++++|++|++|||++ ...+.++++++.++|+++|+.++....... .+|+++.+.+..+. |+|+|+||+||||
T Consensus 11 ~~~~~~~~l~~lv~~~s~s-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~l~l~~H~DvVP 88 (409)
T COG0624 11 LLDDILELLKELVRIPSVS-AGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGG-PTLLLGGHLDVVP 88 (409)
T ss_pred hhHHHHHHHHHHhcCCCCC-cccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCC-CeEEEeccccccC
Confidence 4577889999999999985 478999999999999999998887554432 57999999776543 8999999999999
Q ss_pred CCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc-
Q 018435 104 SEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV- 181 (356)
Q Consensus 104 ~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~- 181 (356)
+++ ..|+.+||++++ ++|++||||++||||+++++++|++.+.+.+..++++|.++++++||+|+ .|+..++....
T Consensus 89 ~g~~~~W~~~Pf~~~~-~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~~~~~~~~~~~~ 166 (409)
T COG0624 89 AGGGEDWTTDPFEPTI-KDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGG-AGGKAYLEEGEE 166 (409)
T ss_pred CCCcccCccCCCccEE-ECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCC-cchHHHHHhcch
Confidence 987 799999999999 78999999999999999999999999999887889999999999999998 68887777643
Q ss_pred --ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC--CCCC-CHH----HHHHHHHHHHHcchhhhH
Q 018435 182 --FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK--LYDN-SAM----ENLFKSIESVRRFRASQF 252 (356)
Q Consensus 182 --~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~--p~~g-nai----~~~~~~~~~i~~~~~~~~ 252 (356)
....+.+++.+.. ....+...++.+++|..+++|+++|+++|+|. |..+ |++ ..+.+++..+.++....+
T Consensus 167 ~~~~~~d~~i~~E~~-~~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~ 245 (409)
T COG0624 167 ALGIRPDYEIVGEPT-LESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGF 245 (409)
T ss_pred hhccCCCEEEeCCCC-CcccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccccc
Confidence 2345777777641 11223457777999999999999999999998 7777 954 444444444433322110
Q ss_pred HHHHhcccccCCceeeeEeeeecCCC--CCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEE
Q 018435 253 DLVKAGLKAEGEVVSVNMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEV 328 (356)
Q Consensus 253 ~~~~~~~~~~~~~~~v~~~~i~~g~~--~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 328 (356)
....+++++.+.++.. ..++...|+||++|++.+|+|+.|.++.+++.+++++.+.. ...++++++
T Consensus 246 ----------~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~ 315 (409)
T COG0624 246 ----------DGPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEI 315 (409)
T ss_pred ----------cCCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEe
Confidence 0035666666665542 12333679999999999999999999998888888876762 234666666
Q ss_pred E
Q 018435 329 V 329 (356)
Q Consensus 329 ~ 329 (356)
.
T Consensus 316 ~ 316 (409)
T COG0624 316 E 316 (409)
T ss_pred c
Confidence 5
No 33
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=1.4e-38 Score=302.29 Aligned_cols=239 Identities=24% Similarity=0.291 Sum_probs=200.9
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~ 107 (356)
.+++++|++|++|||. +++|.++++||.++|+++|++++.. ..+|+++ .| .|+|+|+||+||||.
T Consensus 10 ~~~~~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~~----~~~~~~~--~g----~~~lll~gH~DtVp~--- 74 (346)
T PRK00466 10 QKAKELLLDLLSIYTP--SGNETNATKFFEKISNELNLKLEIL----PDSNSFI--LG----EGDILLASHVDTVPG--- 74 (346)
T ss_pred HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEEe----cCCCcEe--cC----CCeEEEEeccccCCC---
Confidence 6889999999999995 6789999999999999999988763 2345553 33 267999999999984
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
+|++.+ ++|++||||++|||++++++|+|++.|++.+ .++.|+|+++||.|+ .|++++++++ . ..|.
T Consensus 75 -----~~~~~~-~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~l~~~~-~-~~d~ 141 (346)
T PRK00466 75 -----YIEPKI-EGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTS-IGAKELVSKG-F-NFKH 141 (346)
T ss_pred -----CCCcee-eCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCC-ccHHHHHhcC-C-CCCE
Confidence 256677 8999999999999999999999999998876 358999999999986 6999999875 2 3565
Q ss_pred EEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhcccccCCcee
Q 018435 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (356)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
+++. +|++...++++++|..+++|+++|+++|++.|.. ||+..+++++..+.++... ....+
T Consensus 142 ~i~~-----ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~~-nAi~~~~~~l~~l~~~~~~------------~~~~t 203 (346)
T PRK00466 142 IIVG-----EPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAKS-NLIVDISKKIIEVYKQPEN------------YDKPS 203 (346)
T ss_pred EEEc-----CCCCCCceEEEeeEEEEEEEEEEeeccccCCCCc-CHHHHHHHHHHHHHhcccc------------CCCCc
Confidence 5554 4654457999999999999999999999998753 9999999999888654221 12368
Q ss_pred eeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 268 v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
++++.++||. +.|+||++|++.+|+|++|.++.+++.++|++.+.
T Consensus 204 ~~~~~i~gG~------~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 248 (346)
T PRK00466 204 IVPTIIRAGE------SYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQ 248 (346)
T ss_pred ceeeEEecCC------cCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 8899999987 99999999999999999999999999999998775
No 34
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=5.2e-38 Score=299.09 Aligned_cols=256 Identities=17% Similarity=0.218 Sum_probs=209.2
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC-CCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
..+++++++++|++|||+ +++|.++++||.++|+++ |+++.. ...|+++++.+ +. .++|+|+||+||||+
T Consensus 5 ~~~~~~~~l~~li~ips~--s~~e~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~-~~-~~~i~l~~H~Dtvp~ 75 (352)
T PRK13007 5 LAADLAELTAALVDIPSV--SGDEKALADAVEAALRALPHLEVIR-----HGNSVVARTDL-GR-PSRVVLAGHLDTVPV 75 (352)
T ss_pred hHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHHHhCcCceEEe-----cCCeEEEEccC-CC-CCeEEEEccccccCC
Confidence 347899999999999997 578999999999999996 877654 23689999843 22 358999999999998
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc-ccHHHHhccc-cc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSH-VF 182 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~-~~ 182 (356)
.+ ||.+.+ +||++||||++|||+++|++|+|++.|. .++++|.|+|+++||.|+. .|++.+++.. .+
T Consensus 76 ~~------~~~~~~-~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~ 144 (352)
T PRK13007 76 AD------NLPSRR-EGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEW 144 (352)
T ss_pred CC------CCCcce-eCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccc
Confidence 63 456667 8999999999999999999999999983 3578999999999998642 4888888653 23
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccc
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~ 261 (356)
...|++++.+ |+. ..++++++|..+++|+++|+++||+.|+.+ ||+..+++++..+.++...+.. ...
T Consensus 145 ~~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-----~~~ 213 (352)
T PRK13007 145 LAGDFAILLE-----PTD-GVIEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVV-----VDG 213 (352)
T ss_pred cCCCEEEEec-----CCC-CceEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccc-----cCC
Confidence 3467777764 442 468899999999999999999999999988 9999999999998875432100 000
Q ss_pred cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 262 ~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.....+++++.++||. +.|+||++|++++|+|++|.++.+++.++|++.+.
T Consensus 214 ~~~~~~~~~~~i~gG~------~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 264 (352)
T PRK13007 214 LTYREGLNAVRISGGV------AGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFD 264 (352)
T ss_pred CCccceeEeEeEecCC------cCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhc
Confidence 1113578899999987 99999999999999999999999999999998775
No 35
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=1.5e-38 Score=312.73 Aligned_cols=273 Identities=18% Similarity=0.281 Sum_probs=205.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCC----------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCc
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQP----------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~----------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~ 92 (356)
+.+..++++++|++|++|||+++ ..++.++++++.++|+++||+++.++. .++.+.+.+ +.|+
T Consensus 8 i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~------~~~~~~~~~-~~~~ 80 (466)
T TIGR01886 8 VEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDN------YAGHVEYGA-GDER 80 (466)
T ss_pred HHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecC------CceeEEecC-CCCE
Confidence 34567899999999999999853 135678999999999999999886442 222222222 3479
Q ss_pred EEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcccc
Q 018435 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (356)
Q Consensus 93 il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (356)
|+|++|+||||++ ++|+++||++++ +||+|||||++||||+++++|.|++.|++.+..++++|.|+++++||+|+ .|
T Consensus 81 l~~~gH~DvVp~~-~~W~~~Pf~~~~-~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g 157 (466)
T TIGR01886 81 LGIIGHMDVVPAG-EGWTRDPFEPEI-DEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGW-VD 157 (466)
T ss_pred EEEEeecccCCCC-CCCcCCCCCeEE-ECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCc-cc
Confidence 9999999999997 579999999999 99999999999999999999999999999998889999999999999997 69
Q ss_pred HHHHhccccccCCceEEEEecCcc----CcCCcce---------------------------------eE----------
Q 018435 173 AEKFADSHVFNSLNVGIVLDEGLA----STTEDYR---------------------------------AF---------- 205 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~~----~p~~~~~---------------------------------i~---------- 205 (356)
++++++++.. .+++++.|.+.. +++. .. +.
T Consensus 158 ~~~~~~~~~~--~d~~~~~d~~~~~~~ge~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~ 234 (466)
T TIGR01886 158 MDYYFKHEET--PDFGFSPDAEFPIINGEKGN-FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKA 234 (466)
T ss_pred HHHHHhcCcC--CCEEEECCCCceeEEEecce-EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHH
Confidence 9999986542 455444332110 1110 01 11
Q ss_pred -----EeeeeeE---------EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcch--hhhHHHHHh---------c-
Q 018435 206 -----YAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKA---------G- 258 (356)
Q Consensus 206 -----~~~~G~~---------~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~--~~~~~~~~~---------~- 258 (356)
.+++|.. |++|+++|+++|++.|+.| ||+..|++++..+.... ...+..+.. .
T Consensus 235 ~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (466)
T TIGR01886 235 AYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKL 314 (466)
T ss_pred HHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccC
Confidence 1244433 7889999999999999999 99999999887631100 000011100 0
Q ss_pred ----ccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 259 ----LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 259 ----~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.......+++|++.+++|. . | ++|++.+|+|++|.++.+++.++|++.+.
T Consensus 315 ~~~~~~~~~g~~S~nvgvI~gG~------~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~ 368 (466)
T TIGR01886 315 GIAFHDELMGDLAMNAGMFDFDH------A-N---KESKLLLNFRYPQGTSPETMQKQVLDKFG 368 (466)
T ss_pred CCcccccCcCceEEEeEEEEEec------C-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 0111235799999999985 3 3 79999999999999999999999998776
No 36
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=7.2e-38 Score=297.49 Aligned_cols=260 Identities=19% Similarity=0.242 Sum_probs=209.6
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCC
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~ 107 (356)
+++++++++|++|||. +++|.++++||.++|+++|++++.... .+.+|+++ + +.|+|+|+|||||||...
T Consensus 2 ~~~~~~~~~lv~ips~--s~~e~~~~~~l~~~l~~~G~~v~~~~~-~~~~~~~~---~---~~~~i~l~~H~D~vp~~~- 71 (347)
T PRK08652 2 ERAKELLKQLVKIPSP--SGQEDEIALHIMEFLESLGYDVHIESD-GEVINIVV---N---SKAELFVEVHYDTVPVRA- 71 (347)
T ss_pred hhHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCEEEEEec-CceeEEEc---C---CCCEEEEEccccccCCCC-
Confidence 5789999999999997 578999999999999999999876432 23567765 2 237999999999999742
Q ss_pred CCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 108 ~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
+| .+ +||++||||++|||++++++|+|++.|.+.. ++++|.|+|+++||.|+ .|++++++.. . .++
T Consensus 72 ----~~---~~-~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~-~G~~~~~~~~--~-~d~ 137 (347)
T PRK08652 72 ----EF---FV-DGVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGG-RGSALFAERY--R-PKM 137 (347)
T ss_pred ----CC---EE-ECCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCC-hhHHHHHHhc--C-CCE
Confidence 23 35 7899999999999999999999999998653 36799999999999987 5999998752 2 367
Q ss_pred EEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCce
Q 018435 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (356)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
+++.+ |+. ..++++++|..+++|+++|+++|++.|+.+ ||+.++++++..+.++.... ... .. .
T Consensus 138 ~i~~e-----p~~-~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~----~~~---~~--~ 202 (347)
T PRK08652 138 AIVLE-----PTD-LKVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKAL----GKY---FD--P 202 (347)
T ss_pred EEEec-----CCC-CceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhh----hcc---cC--C
Confidence 77774 432 468899999999999999999999999998 99999999999997754321 111 11 2
Q ss_pred eeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 267 ~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
+++++.++||. ..|++|++|++.+|+|+++.++.+++.++|++.+. ..++++++....++
T Consensus 203 ~~~~~~i~gg~------~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~~--~~~v~~~~~~~~~~ 262 (347)
T PRK08652 203 HIGIQEIIGGS------PEYSIPALCRLRLDARIPPEVEVEDVLDEIDPILD--EYTVKYEYTEIWDG 262 (347)
T ss_pred CCcceeeecCC------CCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHHH--hcCceEEEeccCCc
Confidence 45666788887 89999999999999999999999999999998775 24566655433334
No 37
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-38 Score=307.16 Aligned_cols=279 Identities=20% Similarity=0.263 Sum_probs=198.5
Q ss_pred CChhHHHHHHHhhhcccCCCCCcC--------hhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPD--------YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~--------e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
+..++++++|++|++|||+++... ..++++++.++|+++|++++..+ ++ .++++.+ |++ .|+|+|+
T Consensus 8 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~-~~~~~~~-g~~--~~~lll~ 81 (444)
T PRK07205 8 KVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDP--KG-YYGYAEI-GQG--EELLAIL 81 (444)
T ss_pred HhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcC--CC-eEEEEEe-cCC--CcEEEEE
Confidence 456899999999999999864321 25788999999999999887532 22 4566666 542 4799999
Q ss_pred eecccCCCCC-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHH
Q 018435 97 SHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (356)
Q Consensus 97 aH~Dtvp~~~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (356)
||+||||+++ ++|+++||++++ +||++||||++||||+++++|.|++.|++.+..++++|.|+|+++||+|+ .|+++
T Consensus 82 gH~DvVp~~~~~~W~~~Pf~~~v-~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~-~g~~~ 159 (444)
T PRK07205 82 CHLDVVPEGDLSDWQTPPFEAVE-KDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLW-RCMNR 159 (444)
T ss_pred EeeccCCCCCcccCCCCCCceEE-ECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-ccHHH
Confidence 9999999965 689999999999 99999999999999999999999999999988889999999999999997 68888
Q ss_pred HhccccccC----Cc--eEEEEecC-c------cCcCCcceeEEe-----------eeee------------------EE
Q 018435 176 FADSHVFNS----LN--VGIVLDEG-L------ASTTEDYRAFYA-----------ERCP------------------WW 213 (356)
Q Consensus 176 ~~~~~~~~~----~~--~~~~~~~g-~------~~p~~~~~i~~~-----------~~G~------------------~~ 213 (356)
+++.....+ .+ ..++..+. . ..|+....+..+ ++|. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~ 239 (444)
T PRK07205 160 YNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKE 239 (444)
T ss_pred HHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecC
Confidence 887421110 00 10111110 0 011110000000 1221 23
Q ss_pred EEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc--------------cccCCceeeeEeeeecCCC
Q 018435 214 LVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL--------------KAEGEVVSVNMAFLKAGTP 278 (356)
Q Consensus 214 ~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~i~~g~~ 278 (356)
.+++++|+++|++.|+.| ||+..+++++..+.+.... +.+...+ ......+++|+ |
T Consensus 240 ~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv-----g-- 310 (444)
T PRK07205 240 NEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPAL--DFLANVIGEDATGLNIFGDIEDEPSGKLSFNI-----A-- 310 (444)
T ss_pred cEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHH--HHHHHhcCCCCccccCCccccCCCcCCceEEe-----E--
Confidence 389999999999999988 9999999988887643211 1010000 00011233333 1
Q ss_pred CCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEE
Q 018435 279 SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFE 327 (356)
Q Consensus 279 ~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 327 (356)
..|+||++|++.+|+|++|.++.+++.++|++.+.. .+++++
T Consensus 311 -----~~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~--~~v~~~ 352 (444)
T PRK07205 311 -----GLTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQE--YGLTYE 352 (444)
T ss_pred -----EEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHH--cCcEEE
Confidence 457999999999999999999999999999876642 345544
No 38
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=1.1e-37 Score=296.26 Aligned_cols=262 Identities=18% Similarity=0.154 Sum_probs=205.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..++++++|++|++|||+ +++|.++++|+.++|+++|++++. +..+|+++.+ |.. .|+|+|+||+||||..
T Consensus 4 ~~~~~~~~l~~Lv~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~----~~~~n~i~~~-~~~--~~~l~~~~H~DtVp~~ 74 (348)
T PRK04443 4 SALEARELLKGLVEIPSP--SGEEAAAAEFLVEFMESHGREAWV----DEAGNARGPA-GDG--PPLVLLLGHIDTVPGD 74 (348)
T ss_pred chHHHHHHHHHHHcCCCC--CCChHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEc-CCC--CCEEEEEeeccccCCC
Confidence 357899999999999997 578999999999999999998875 4457899988 432 3899999999999953
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCC
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (356)
.|| .+ ++|++||||++|||++++++|+|++.| +..++++|.|+++++||+|+. |...++.+. + ..
T Consensus 75 ------~p~--~~-~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~-~~~~~l~~~-~-~~ 139 (348)
T PRK04443 75 ------IPV--RV-EDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSS-GGARLVADR-E-RP 139 (348)
T ss_pred ------CCc--Ee-eCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCCh-hHHHHHHhc-c-CC
Confidence 366 45 899999999999999999999999998 346789999999999999874 555555543 3 45
Q ss_pred ceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHcchhhhHHHHHhcccccCCc
Q 018435 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (356)
Q Consensus 186 ~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 265 (356)
|++++.+ |++...++++++|..+++++++|+++||+.| ..||+..++++++.+.++... ..........
T Consensus 140 d~~iv~E-----pt~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-g~NAi~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 208 (348)
T PRK04443 140 DAVIIGE-----PSGWDGITLGYKGRLLVTYVATSESFHSAGP-EPNAAEDAIEWWLAVEAWFEA-----NDGRERVFDQ 208 (348)
T ss_pred CEEEEeC-----CCCccceeeecccEEEEEEEEEeCCCccCCC-CCCHHHHHHHHHHHHHHHHhc-----Cccccccccc
Confidence 7777664 5443368899999999999999999999987 239999999999998765320 0000001123
Q ss_pred eeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 266 ~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
.+++++.+. . ..|+||++|++.+|+|++|.++.+++.++|++.+. ++++++....+|
T Consensus 209 ~~~~i~~i~--~------~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~----~~~~~~~~~~~~ 265 (348)
T PRK04443 209 VTPKLVDFD--S------SSDGLTVEAEMTVGLRLPPGLSPEEAREILDALLP----TGTVTFTGAVPA 265 (348)
T ss_pred cceeeeEEe--c------CCCCCCceEEEEEEEccCCCCCHHHHHHHHHHhCC----CcEEEEecCCCc
Confidence 567777777 2 67999999999999999999999999999998764 344554433333
No 39
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=5.7e-38 Score=309.17 Aligned_cols=282 Identities=19% Similarity=0.246 Sum_probs=208.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----------cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCc
Q 018435 23 PAKSDDSIIERFRAYLQIDTSQPN----------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92 (356)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----------~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~ 92 (356)
++...++++++|++|++|||.++. .++.++++|+.++++++|++++.++ |+++.+.... +.++
T Consensus 9 ~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~------n~~~~~~~~~-~~~~ 81 (466)
T PRK07318 9 VEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD------NYAGHIEYGE-GEEV 81 (466)
T ss_pred HHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec------CccceEEECC-CCCE
Confidence 445668899999999999998643 2467899999999999999988643 4555543222 2478
Q ss_pred EEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcccc
Q 018435 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (356)
Q Consensus 93 il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (356)
|+|+||+||||++ .+|+++||++++ +||++||||++||||+++++++|++.|++.+..++++|.|+|++|||.|+ .|
T Consensus 82 l~l~gH~DvVp~~-~~W~~~Pf~~~~-~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~-~G 158 (466)
T PRK07318 82 LGILGHLDVVPAG-DGWDTDPYEPVI-KDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGW-KC 158 (466)
T ss_pred EEEEEecCCCCCC-CCCCCCCcceEE-ECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCc-hh
Confidence 9999999999986 579999999999 89999999999999999999999999999888888999999999999987 69
Q ss_pred HHHHhccccccCCceEEEEecCc----cCc----------------------------CCc-------------------
Q 018435 173 AEKFADSHVFNSLNVGIVLDEGL----AST----------------------------TED------------------- 201 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~----~~p----------------------------~~~------------------- 201 (356)
++++++++... ++++..|... .+| .+.
T Consensus 159 ~~~l~~~~~~~--~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 159 MDYYFEHEEAP--DFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred HHHHHHhCCCC--CEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 99999864221 2222222100 000 000
Q ss_pred ----ceeEEeeeeeE-----EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhh--hHHHHHh------------
Q 018435 202 ----YRAFYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS--QFDLVKA------------ 257 (356)
Q Consensus 202 ----~~i~~~~~G~~-----~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~--~~~~~~~------------ 257 (356)
+.+..+++|.. |++|+++|+++|++.|+.| |||..+++++..+...... .++.+..
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLG 316 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCC
Confidence 00112567765 7999999999999999999 9999999999988642110 0111100
Q ss_pred --cccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEE
Q 018435 258 --GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVV 329 (356)
Q Consensus 258 --~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 329 (356)
.........++|++.+++|. .. +|++.+|+|++|.++.+++.++|++.+. . .++++++.
T Consensus 317 ~~~~~~~~g~~t~nvg~i~gg~------~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~-~-~~~~~~~~ 377 (466)
T PRK07318 317 IAYEDDVMGDLTMNVGVFSFDE------EK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIG-V-TGVELSEH 377 (466)
T ss_pred CcccCCCccCeEEEeeEEEEec------Cc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHH-h-cCeEEEEc
Confidence 00001124688898888864 21 7999999999999999999999987664 2 34555443
No 40
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=8.4e-38 Score=298.88 Aligned_cols=272 Identities=17% Similarity=0.179 Sum_probs=218.3
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~ 110 (356)
.+++++|++|||. +++|.++++||.++|+++|++++.. .....|+++++++..+ .|+|+|.||+||||+++ |.
T Consensus 2 ~~~~~~L~~ips~--s~~E~~~a~~l~~~l~~~g~~~~~~--~~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~--~~ 74 (363)
T TIGR01891 2 TDIRRHLHEHPEL--SFEEFKTSSLIAEALESLGIEVRRG--VGGATGVVATIGGGKP-GPVVALRADMDALPIQE--QT 74 (363)
T ss_pred hHHHHHHhcCCCC--CCchHHHHHHHHHHHHHcCCceEec--CCCCcEEEEEEeCCCC-CCEEEEEeccCCCCccc--cc
Confidence 5789999999996 6799999999999999999998752 2356899999966443 48999999999999854 67
Q ss_pred CCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEE
Q 018435 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (356)
Q Consensus 111 ~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~ 190 (356)
.+||... ++|++||||+ ++++++++.|++.|++.+..++++|.|+|+++||.+ .|++++++++.++..+.+++
T Consensus 75 ~~pf~~~--~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~~i~ 147 (363)
T TIGR01891 75 DLPYKST--NPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGG--GGATKMIEDGVLDDVDAILG 147 (363)
T ss_pred CCCcccC--CCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCc--chHHHHHHCCCCCCcCEEEE
Confidence 7999974 6899999997 588899999999998876667899999999999986 49999998766666677887
Q ss_pred EecCccCcCCcc--eeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCcee
Q 018435 191 LDEGLASTTEDY--RAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (356)
Q Consensus 191 ~~~g~~~p~~~~--~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
++.....+.+.. ....+++|..+++++++|+++|++.|+.+ ||+..+++++.++.++..... ......+
T Consensus 148 ~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~--------~~~~~~~ 219 (363)
T TIGR01891 148 LHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNV--------DPSRPAV 219 (363)
T ss_pred ECCCCCCCCeEEEECCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccC--------CCCCCcE
Confidence 765322232221 22346689999999999999999999888 999999999999976532100 0112368
Q ss_pred eeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 268 v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++++.++||. +.|+||++|++.+|+|++|.++.+++.++|++.+.. ...++++++..
T Consensus 220 ~~i~~i~gG~------~~nvvP~~~~~~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~ 278 (363)
T TIGR01891 220 VTVGIIEAGG------APNVIPDKASMSGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNY 278 (363)
T ss_pred EEEEEEEcCC------CCcEECCeeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999987 999999999999999999999999999999877652 23456666654
No 41
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=3e-37 Score=302.40 Aligned_cols=271 Identities=15% Similarity=0.147 Sum_probs=216.4
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCC-
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~- 106 (356)
+.+.++.+.++++|+. +++|.+++++|.++|+++|++++.. ....|+++++ |.+. .|+|+|.||||+||+.+
T Consensus 97 ~~l~~l~r~lh~~PEl--s~~E~~t~~~i~~~L~~~G~~~~~~---~~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~ 169 (478)
T PLN02280 97 AWLKSVRRKIHENPEL--AFEEYKTSELVRSELDRMGIMYRYP---LAKTGIRAWI-GTGG-PPFVAVRADMDALPIQEA 169 (478)
T ss_pred HHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHCCCeEEec---CCCCEEEEEE-CCCC-CCEEEEEEecCCCcccCC
Confidence 4555555666677764 6899999999999999999998752 3567999998 5443 38999999999999975
Q ss_pred CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 107 ~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
.+|+++| + ++|++||||+ |++++++|.+++.|++.+..++++|.|+|+++||+| .|++++++++.+++.+
T Consensus 170 ~~w~~~p----~-~~G~~h~cGh---d~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g--~Ga~~li~~g~~~~~d 239 (478)
T PLN02280 170 VEWEHKS----K-VAGKMHACGH---DAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG--NGAKRMIGDGALDDVE 239 (478)
T ss_pred CCCCCCC----C-CCCeEEeCCC---cHHHHHHHHHHHHHHhccccCCceEEEEeccccccc--chHHHHHHCCCCcCCC
Confidence 5799988 3 8999999985 679999999999999887778999999999999997 3999999988777777
Q ss_pred eEEEEecCccCcCCc--ceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccC
Q 018435 187 VGIVLDEGLASTTED--YRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (356)
Q Consensus 187 ~~~~~~~g~~~p~~~--~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 263 (356)
..+.++.+...|.+. .......+|..+++|+++|+++|++.|+.| ||+.++++++..++++.... .. ..
T Consensus 240 ~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~----~~----~~ 311 (478)
T PLN02280 240 AIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSRE----AN----PL 311 (478)
T ss_pred EEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcc----cC----CC
Confidence 777776643334321 111223459999999999999999999999 99999999999887653210 01 11
Q ss_pred CceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 264 ~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
...+++++.++||. +.|+||++|++.+|+|+.+.++.+++.++|++.+.. ...++++++.
T Consensus 312 ~~~tvnvg~I~GG~------~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~ 373 (478)
T PLN02280 312 DSQVVSVTTMDGGN------NLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVD 373 (478)
T ss_pred CCcEEEEEEEEccC------CCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 34688999999998 999999999999999999999999999999977652 3456666554
No 42
>PRK06156 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-37 Score=304.47 Aligned_cols=281 Identities=19% Similarity=0.263 Sum_probs=204.7
Q ss_pred CChhHHHHHHHhhhcccCCCCC---cCh----hHHHHHHHHHHHHCCCceEEEeecCCCceE-E-EEecCCCCCCCcEEE
Q 018435 25 KSDDSIIERFRAYLQIDTSQPN---PDY----TNASKFILAQAEALSLESQTLEFAKNKPLI-L-LKWPGSNPQLPSILL 95 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~---~~e----~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv-~-~~~~g~~~~~~~il~ 95 (356)
++.++++++|++|++|||+++. +++ .++++||.++++++|++++. ..|+ + +.++|++ .|+|+|
T Consensus 43 ~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~------~~~~v~~~~~~g~~--~~~l~l 114 (520)
T PRK06156 43 KYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRN------VDNRVLEIGLGGSG--SDKVGI 114 (520)
T ss_pred hhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEe------cCCeEEEEEecCCC--CCeEEE
Confidence 4567999999999999998642 122 46789999999999998753 2344 4 6776643 479999
Q ss_pred EeecccCCCCCCCCCC-----CCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCcc
Q 018435 96 NSHTDVVPSEPSKWSH-----HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (356)
Q Consensus 96 ~aH~Dtvp~~~~~w~~-----~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (356)
.|||||||++..+|.+ +||.+.+ +||++||||++|||++++++++|++.|.+.+..++++|.|+|+++||.|+
T Consensus 115 ~gH~DvVp~~~~~W~~~~~~~~Pf~~~~-~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~- 192 (520)
T PRK06156 115 LTHADVVPANPELWVLDGTRLDPFKVTL-VGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDG- 192 (520)
T ss_pred EEecCccCCCCccCccCCccCCCCceEE-ECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCc-
Confidence 9999999997778999 9999999 89999999999999999999999999999888888999999999999987
Q ss_pred ccHHHHhccccccCCceEEEEecCc----cCcCC---------------cce----------------------------
Q 018435 171 DGAEKFADSHVFNSLNVGIVLDEGL----ASTTE---------------DYR---------------------------- 203 (356)
Q Consensus 171 ~G~~~~~~~~~~~~~~~~~~~~~g~----~~p~~---------------~~~---------------------------- 203 (356)
.|++.++++.. ..++++++|... .+|+. ...
T Consensus 193 ~G~~~~~~~~~--~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~ 270 (520)
T PRK06156 193 DPLKYYLERYT--PPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAA 270 (520)
T ss_pred hhHHHHHHhcC--CCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHH
Confidence 59999987643 234444443210 01110 000
Q ss_pred -----------eEEeeeeeE---------EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHc-chhhh----HHHHHh
Q 018435 204 -----------AFYAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRASQ----FDLVKA 257 (356)
Q Consensus 204 -----------i~~~~~G~~---------~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~-~~~~~----~~~~~~ 257 (356)
...+++|.. |++|+++|+++|++.|+.| |||..+++++..+.+ +.... ...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~ 350 (520)
T PRK06156 271 LAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYIND 350 (520)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 011222433 8999999999999999998 999999999999876 21110 001110
Q ss_pred cc--------------cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CC
Q 018435 258 GL--------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--AS 321 (356)
Q Consensus 258 ~~--------------~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~ 321 (356)
.. .......+++++.+.+| +++|++.+|+|++|.++.+++.++|++.+.. ..
T Consensus 351 ~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~gg------------~~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~ 418 (520)
T PRK06156 351 LVGLDYLGEKFGVAYKDDFMGPLTLSPTVVGQD------------DKGTEVTVNLRRPVGKTPELLKGEIADALAAWQAK 418 (520)
T ss_pred hhCCCCccCcCCccccCCCccCcEEeeeEEEEe------------CCeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 00 00011234555555543 2589999999999999999999999977652 23
Q ss_pred CCceEEEE
Q 018435 322 RNMTFEVV 329 (356)
Q Consensus 322 ~~~~~~~~ 329 (356)
.++++++.
T Consensus 419 ~gv~ve~~ 426 (520)
T PRK06156 419 HQVALDID 426 (520)
T ss_pred cCceEEEe
Confidence 56666654
No 43
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=9.2e-37 Score=291.52 Aligned_cols=264 Identities=21% Similarity=0.215 Sum_probs=213.7
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC---CCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~---~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
+++++|++|++|||. +++|.+++++|.++|+++|++++..+..+ +.+|+++.++|+++ .|+|+|.||+||||++
T Consensus 1 ~~~~~~~~l~~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~i~l~~H~D~V~~~ 77 (361)
T TIGR01883 1 RLKKYFLELIQIDSE--SGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVK-FDTIFFCGHMDTVPPG 77 (361)
T ss_pred ChHHHHHHHeecCCC--CCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCC-CCcEEEEeeccccCCC
Confidence 367899999999997 56899999999999999999987654332 37899999987643 4899999999999975
Q ss_pred CCCCCCCCCCeeeCCCCeEEecCc----ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 106 PSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 106 ~~~w~~~P~~~~~~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
+ ||.+.+ ++|++||||+ +|||++++++|.+++.|++.+ .++++|.|+|+++||.|+ .|++.+.+..
T Consensus 78 ~------~~~~~~-~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~-~G~~~~~~~~- 147 (361)
T TIGR01883 78 A------GPEPVV-EDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGL-IGMRLFDESK- 147 (361)
T ss_pred C------CCCcee-cCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCc-hhHhHhChhh-
Confidence 3 344556 8899999999 999999999999999998876 467899999999999986 6999887642
Q ss_pred ccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC-CCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcc
Q 018435 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (356)
Q Consensus 182 ~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~-~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~ 259 (356)
...+++++++.+. ....++.+++|..+++++++|+++|++ .|+.+ ||+..+++++..+.....
T Consensus 148 -~~~~~~~~~~~~~----~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~~---------- 212 (361)
T TIGR01883 148 -ITAAYGYCLDAPG----EVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRI---------- 212 (361)
T ss_pred -cCcceeEEEeCCC----CcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccCC----------
Confidence 2245677776421 123588899999999999999999985 69999 999999999988754311
Q ss_pred cccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 260 ~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
....+++++.++||. ..|+||++|++.+|+|..+..+.+.+.++|++.+.. ...+.++++.
T Consensus 213 ---~~~~~~~i~~i~gG~------~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 275 (361)
T TIGR01883 213 ---DEETTANIGSFSGGV------NTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLEEE 275 (361)
T ss_pred ---CCccccccceeecCC------ccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 123578888999998 999999999999999999988888888888876642 2345555543
No 44
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=2.7e-36 Score=293.78 Aligned_cols=272 Identities=17% Similarity=0.154 Sum_probs=213.3
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCC
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~ 105 (356)
..+++++++++|+++|+. +++|.+++++|.++|+++|++++. ..+.+|+++.+ |+++ .|+|+|+|||||||+.
T Consensus 45 ~~~~~~~~r~~lh~~PE~--s~~E~~ta~~i~~~L~~~G~~~~~---~~~~~~via~~-g~~~-g~~i~l~~h~DaVp~~ 117 (437)
T PLN02693 45 VFDWMVRIRRKIHENPEL--GYEEFETSKLIRSELDLIGIKYRY---PVAITGIIGYI-GTGE-PPFVALRADMDALPIQ 117 (437)
T ss_pred hHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHHHCCCeeEe---cCCCcEEEEEE-CCCC-CCEEEEEeecCCCcCC
Confidence 346789999999999997 789999999999999999998763 23578999998 4333 4899999999999997
Q ss_pred C-CCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccC
Q 018435 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (356)
Q Consensus 106 ~-~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (356)
+ .+|.++|| .+|++||||+ |+++++++.|++.|++.+..++++|.|+|+++||++ .|++.+++++.++.
T Consensus 118 e~~~~~~~p~-----~~G~~hacGh---kg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~--~Ga~~~i~~g~~~~ 187 (437)
T PLN02693 118 EAVEWEHKSK-----IPGKMHACGH---DGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGL--SGAKKMREEGALKN 187 (437)
T ss_pred CCCCCCCCCC-----CCCCEECCcc---hHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccch--hhHHHHHHCCCCCC
Confidence 5 57999998 4689998874 999999999999999887667899999999999953 49999999876665
Q ss_pred CceEEEEecCccCcCCcceeE--EeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccc
Q 018435 185 LNVGIVLDEGLASTTEDYRAF--YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (356)
Q Consensus 185 ~~~~~~~~~g~~~p~~~~~i~--~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~ 261 (356)
.+.++..+.....+.+...+. ...+|..+++|+++|+++|++.|+.| ||+..+++++..++++.... ..
T Consensus 188 ~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~--------~~ 259 (437)
T PLN02693 188 VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRE--------TD 259 (437)
T ss_pred CCEEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhccc--------CC
Confidence 555444443221122211111 11468889999999999999999999 99999999999998763210 00
Q ss_pred cCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 262 ~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
.....+++++.++||. +.|+||++|++++|+|+.+. .+.+.++|++++.. ..+++++++..
T Consensus 260 ~~~~~ti~vg~i~GG~------~~NvVPd~a~~~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~ 322 (437)
T PLN02693 260 PLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNASVNL 322 (437)
T ss_pred CCCCcEEEEEEEEcCC------CCceECCeEEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 1234789999999998 99999999999999999986 46788888876652 34555555544
No 45
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=1.7e-35 Score=280.11 Aligned_cols=235 Identities=24% Similarity=0.301 Sum_probs=192.3
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCC
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~ 111 (356)
++|++|++|||. +++|.++++||.++|+++|+++.. +..+|+++.. +. +.|+|+|+||+||||.
T Consensus 1 ~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~----~~~~~~~~~~-~~--~~~~i~~~~H~D~vp~------- 64 (336)
T TIGR01902 1 ELLKDLLEIYSP--SGKEANAAKFLEEISKDLGLKLII----DDAGNFILGK-GD--GHKKILLAGHVDTVPG------- 64 (336)
T ss_pred ChHHHHhcCCCC--CcchHHHHHHHHHHHHHcCCEEEE----CCCCcEEEEe-CC--CCceEEEEccccccCC-------
Confidence 368999999997 578999999999999999998742 4456888865 33 3489999999999984
Q ss_pred CCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEE
Q 018435 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191 (356)
Q Consensus 112 ~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~ 191 (356)
+|...+ +||++||||++|||++++++|+|++.|++.+ .+|.|+++++||+|+ .|++++++... .+++++.
T Consensus 65 -~~~~~~-~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~~~~~~~---~~~~ii~ 134 (336)
T TIGR01902 65 -YIPVKI-EGGLLYGRGAVDAKGPLIAMIFATWLLNEKG----IKVIVSGLVDEESSS-KGAREVIDKNY---PFYVIVG 134 (336)
T ss_pred -CcccEE-eCCEEEEecccCCCcHHHHHHHHHHHHHhCC----CcEEEEEEeCcccCC-ccHHHHHhhcC---CCEEEEe
Confidence 355567 8999999999999999999999999998653 589999999999986 69999998642 2355655
Q ss_pred ecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCCCHHHHHHHHHHHHHc-chhhhHHHHHhcccccCCceeeeE
Q 018435 192 DEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR-FRASQFDLVKAGLKAEGEVVSVNM 270 (356)
Q Consensus 192 ~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~gnai~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~v~~ 270 (356)
+ |++...++++++|..+++++++|+++|++.+. +|++.+.++++.+.+ +... .. . ...++++
T Consensus 135 e-----pt~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~--~ai~~~~~~~~~l~~~~~~~------~~---~-~~~~~~~ 197 (336)
T TIGR01902 135 E-----PSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG--NAAELLIDYSKKIIEVYKQP------EN---Y-DKPSIVP 197 (336)
T ss_pred c-----CCCCcceeeeeeeEEEEEEEEEecCcccCCCh--hHHHHHHHHHHHHHHHhccc------cC---C-CCCccee
Confidence 3 55434689999999999999999999999765 588888888888762 2211 00 1 1246778
Q ss_pred eeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHH
Q 018435 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315 (356)
Q Consensus 271 ~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~ 315 (356)
+.+++|. +.|+||++|++.+|+|++|.++.+++.++|++
T Consensus 198 ~~i~gg~------~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~ 236 (336)
T TIGR01902 198 TIIRFGE------SYNDTPAKLELHFDLRYPPNNKPEEAIKEITD 236 (336)
T ss_pred EEEEccC------CCcCCCceEEEEEEEeeCCCCCHHHHHHHHHh
Confidence 8888887 99999999999999999999999999998875
No 46
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=100.00 E-value=1.7e-35 Score=289.11 Aligned_cols=269 Identities=18% Similarity=0.268 Sum_probs=198.2
Q ss_pred hHHHHHHHhhhcccCCC----CC------cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 28 DSIIERFRAYLQIDTSQ----PN------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s----~~------~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
++++++|++|++|||++ |. .++.++++|+.++|+++|++++.+.. ...++.+ +. +.|+|+|+|
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~----~~~~~~~-~~--~~~~l~l~g 74 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN----YAGYAEY-GQ--GEEYLGILG 74 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC----ceEEEEe-CC--CCCeEEEEe
Confidence 57899999999999986 21 12478999999999999998875321 1112333 22 347999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
|+||||+++ .|+++||++++ ++|++||||++||||++++++.|++.|++.+..++++|.|+|+++||.|+ .|+++++
T Consensus 75 H~D~Vp~~~-~W~~~Pf~~~~-~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~l 151 (447)
T TIGR01887 75 HLDVVPAGD-GWTSPPFEAEI-KDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGW-ACIDYYF 151 (447)
T ss_pred ecCCCCCCC-CCcCCCCceEE-ECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-HhHHHHH
Confidence 999999974 79999999999 89999999999999999999999999999988888999999999999986 5999888
Q ss_pred ccccccC----Cce---EEEEecC----------------------ccCcCCcc----eeEEeee---------------
Q 018435 178 DSHVFNS----LNV---GIVLDEG----------------------LASTTEDY----RAFYAER--------------- 209 (356)
Q Consensus 178 ~~~~~~~----~~~---~~~~~~g----------------------~~~p~~~~----~i~~~~~--------------- 209 (356)
++..... .+. +++...| ..+|++.. .++++.+
T Consensus 152 ~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~ 231 (447)
T TIGR01887 152 EHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIA 231 (447)
T ss_pred HhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhh
Confidence 7532110 111 1111110 01233211 1345544
Q ss_pred ----eeE-----EEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHH--cchhhhHHHHHhcc-------------c-ccC
Q 018435 210 ----CPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVR--RFRASQFDLVKAGL-------------K-AEG 263 (356)
Q Consensus 210 ----G~~-----~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~--~~~~~~~~~~~~~~-------------~-~~~ 263 (356)
|.. +++|+++|+++|++.|+.| ||+..+++++..+. +......+.+...+ . ...
T Consensus 232 ~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 311 (447)
T TIGR01887 232 KELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVS 311 (447)
T ss_pred cCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCc
Confidence 777 7999999999999999999 99999999999886 32221111111100 0 001
Q ss_pred CceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHh
Q 018435 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317 (356)
Q Consensus 264 ~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~ 317 (356)
..+++|++.+++| .|++|++.+|+|++|.++.+++.+++.+.+
T Consensus 312 ~~~t~nvg~I~~g-----------~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~ 354 (447)
T TIGR01887 312 GDLTMNVGVIDYE-----------NAEAGLIGLNVRYPVGNDPDTMLKNELAKE 354 (447)
T ss_pred CCcEEEEEEEEEe-----------CCcEEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 2467888888876 389999999999999999998888876443
No 47
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=1.6e-35 Score=286.95 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=201.2
Q ss_pred HHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 30 IIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 30 ~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
.++.|.+|++|||++. +.++.++++||.++|+++|++...+ ++.+||+++++|++++.|+|+|+||+||
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~---~~~~nvi~~~~g~~~~~~~lll~~H~D~ 79 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVI---DEHAIVTAKLPGNTPGAPRIGFIAHLDT 79 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEE---cCCeEEEEEEecCCCCCCeEEEEEEecC
Confidence 6789999999999863 2467899999999999999964433 5789999999887655589999999999
Q ss_pred CCCCCC--------CCCCCCCCeee-----------------CCCCeEEecCc----ccchHHHHHHHHHHHHHHHcCCC
Q 018435 102 VPSEPS--------KWSHHPFGAHL-----------------DSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQ 152 (356)
Q Consensus 102 vp~~~~--------~w~~~P~~~~~-----------------~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~ 152 (356)
||+++. .|..+||.+.. .+++++||||+ +|||+|++++|.|++.|++++ .
T Consensus 80 Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~ 158 (404)
T PRK13381 80 VDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-V 158 (404)
T ss_pred CCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-C
Confidence 998643 14444433221 14678999999 999999999999999998875 4
Q ss_pred CcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC-CCCC
Q 018435 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDN 231 (356)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~-p~~g 231 (356)
++++|.|+|+++||+|+ .|+++++.+. +. .++++++|.+ .|+ .++++++|..+++|+++|+++|++. |..+
T Consensus 159 ~~g~i~~~~~~dEE~g~-~G~~~~~~~~-~~-~d~~~~~~~~--~~~---~i~~~~~G~~~~~v~v~Gk~aHa~~~p~~g 230 (404)
T PRK13381 159 EHGDIVVAFVPDEEIGL-RGAKALDLAR-FP-VDFAYTIDCC--ELG---EVVYENFNAASAEITITGVTAHPMSAKGVL 230 (404)
T ss_pred CCCCEEEEEEccccccc-ccHHHHHHhc-CC-CCEEEEecCC--Ccc---eEEEecCcceEEEEEEEeEecCCCCCcccC
Confidence 57899999999999986 6999987653 33 5777777654 343 5788899999999999999999874 7777
Q ss_pred -CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHH
Q 018435 232 -SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE 310 (356)
Q Consensus 232 -nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~ 310 (356)
||+..+++++..+.++..... ......+++++.+.+ .|++|++.+|+|+.|.++.+.+.
T Consensus 231 ~NAI~~a~~~i~~l~~~~~~~~--------~~~~~~~i~v~~i~g------------~p~~~~~~~diR~~~~~~~e~i~ 290 (404)
T PRK13381 231 VNPILMANDFISHFPRQETPEH--------TEGREGYIWVNDLQG------------NVNKAKLKLIIRDFDLDGFEARK 290 (404)
T ss_pred cCHHHHHHHHHHhCCccCCCCC--------CCCcccEEEEEeEEe------------CcceEEEEEEEecCCHHHHHHHH
Confidence 999999999998876532100 001122455554442 28999999999999999999999
Q ss_pred HHHHHHhc
Q 018435 311 RRIVEEWA 318 (356)
Q Consensus 311 ~~i~~~~~ 318 (356)
++|++.+.
T Consensus 291 ~~i~~~~~ 298 (404)
T PRK13381 291 QFIEEVVA 298 (404)
T ss_pred HHHHHHHH
Confidence 99987665
No 48
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=274.19 Aligned_cols=292 Identities=22% Similarity=0.219 Sum_probs=242.7
Q ss_pred CChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
...++++++.++|+++|+. +.+|.++++|+.++|+++|+++. +.......+++.++|.+++ |+|+|++.||.+|.
T Consensus 9 ~~~~~l~~~rr~lH~~PEL--~f~E~~Ta~~i~~~L~~~g~~~~--~~~~~~TGvva~~~~g~~g-~tIalRAD~DALPi 83 (392)
T COG1473 9 ELKDELIEWRRDLHEHPEL--GFEEYRTAAYIAEKLEELGFEVV--EVGGGKTGVVATLKGGKPG-PTIALRADMDALPI 83 (392)
T ss_pred hhhHHHHHHHHHHhhCCcc--chhHHHHHHHHHHHHHHcCCeeE--eccCCceEEEEEEcCCCCC-CEEEEEeecccCcc
Confidence 5568999999999999997 67999999999999999999832 2222357799999877654 69999999999999
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccC
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (356)
.+. +.-||.++ .+|.+|+||+ .++++++|.+++.|+++...++++|+|+|+|+||+++ |++.+++++.+++
T Consensus 84 ~E~--t~~~~~S~--~~G~mHACGH---D~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~--Ga~~mi~~G~~~~ 154 (392)
T COG1473 84 QEE--TGLPFASK--NPGVMHACGH---DGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG--GAKAMIEDGVFDD 154 (392)
T ss_pred ccc--cCCCcccC--CCCCcccCCc---hHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc--cHHHHHhcCCccc
Confidence 652 45789986 6889999998 7999999999999998866789999999999999985 8999999998988
Q ss_pred -CceEEEEecCccCcCCcceeEEe--eeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhccc
Q 018435 185 -LNVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (356)
Q Consensus 185 -~~~~~~~~~g~~~p~~~~~i~~~--~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~ 260 (356)
+|.++.++.....|.+.+.+..| ..+...++++++|+++|++.|+.+ ||+.+++.++..++.+.....
T Consensus 155 ~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~-------- 226 (392)
T COG1473 155 FVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNV-------- 226 (392)
T ss_pred cccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhccc--------
Confidence 99889888754325555555555 356778999999999999999999 999999999999987654311
Q ss_pred ccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc--cCCCCceEEEEeecccccCC
Q 018435 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA--PASRNMTFEVVINSLSLLHT 338 (356)
Q Consensus 261 ~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 338 (356)
.+.....++++.+++|+ +.||||+++++..++|.......+.+.++|++++. +..+++++++......+...
T Consensus 227 ~p~~~~vv~vg~~~aG~------a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~~~~~p~~~ 300 (392)
T COG1473 227 DPLDSAVVTVGKIEAGT------AANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEIDYERGYPPVV 300 (392)
T ss_pred CCccCeEEEEEEecCCC------cCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCCcc
Confidence 11234789999999998 89999999999999999999999999999997766 36788999998766655555
Q ss_pred CccCce
Q 018435 339 NPKRML 344 (356)
Q Consensus 339 ~~~~~~ 344 (356)
|.+...
T Consensus 301 Nd~~~~ 306 (392)
T COG1473 301 NDPALT 306 (392)
T ss_pred CCHHHH
Confidence 554443
No 49
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=263.75 Aligned_cols=315 Identities=19% Similarity=0.328 Sum_probs=238.0
Q ss_pred HhhhcCCCCChhHHHHHHHhhhcccCCCCC----cChhHHHHHHHHHHHHCCCceEEEeecCC----------CceEEEE
Q 018435 17 LIIFSSPAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKN----------KPLILLK 82 (356)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~g~~~~~~~~~~~----------~~nv~~~ 82 (356)
-..+..++...+++++.|++.++|+|+|.. ....++++|+.+.++++|..++..+.... .|-++++
T Consensus 5 ~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~ 84 (473)
T KOG2276|consen 5 TKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGV 84 (473)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhc
Confidence 345667888999999999999999998642 24578999999999999988887665432 1233333
Q ss_pred ecCCCCCCCcEEEEeecccCCCC-CCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEE
Q 018435 83 WPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSF 161 (356)
Q Consensus 83 ~~g~~~~~~~il~~aH~Dtvp~~-~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 161 (356)
+ |++|+++++++++|||++|+. +++|..+||+.++ ++|++||||+.||||++++++++++++++.++.++.+|+|+|
T Consensus 85 ~-Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~-~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~ 162 (473)
T KOG2276|consen 85 L-GSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTE-DDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVF 162 (473)
T ss_pred c-cCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEE-ECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEE
Confidence 3 999999999999999999997 6899999999999 999999999999999999999999999999999999999999
Q ss_pred eeccccCccccHHHHhcc---ccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEe--cCCccCCCCCC---CH
Q 018435 162 VPDEEIGGHDGAEKFADS---HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN---SA 233 (356)
Q Consensus 162 ~~~EE~g~~~G~~~~~~~---~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G--~~~Hs~~p~~g---na 233 (356)
...||.|| .|...+++. ..+.++|+ +++...+|..+..+.+.+|.||...+.+++.| +-.|||- .+| -|
T Consensus 163 EgmEEsgS-~~L~~l~~~~kD~~~~~vD~-vciSdnyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGv-fGG~~hE~ 239 (473)
T KOG2276|consen 163 EGMEESGS-EGLDELIEKEKDKFFKDVDF-VCISDNYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGV-FGGVVHEA 239 (473)
T ss_pred EechhccC-ccHHHHHHHHhhhhhccCCE-EEeeCceeccCCCcccccccccceeEEEEEeeccccccccc-ccchhHHH
Confidence 99999998 588888765 24556775 55555667666778899999999999999999 6789985 444 34
Q ss_pred HHHHHHHHHHHHcchh----------------hhH----------HHHHh--c---c---------cccCCceeeeEeee
Q 018435 234 MENLFKSIESVRRFRA----------------SQF----------DLVKA--G---L---------KAEGEVVSVNMAFL 273 (356)
Q Consensus 234 i~~~~~~~~~i~~~~~----------------~~~----------~~~~~--~---~---------~~~~~~~~v~~~~i 273 (356)
+..+..++..+.+.+. .+. +.++. + + .....+++..+..|
T Consensus 240 m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihgI 319 (473)
T KOG2276|consen 240 MNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHGI 319 (473)
T ss_pred HHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceecc
Confidence 4444444444332111 000 00000 0 0 01123567777777
Q ss_pred ecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc------CCCCceEEEEeecccccCC
Q 018435 274 KAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP------ASRNMTFEVVINSLSLLHT 338 (356)
Q Consensus 274 ~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~ 338 (356)
+|... +.++..+||..+.-++.+|+.|.++.+.+.+.+++.+.. ....+.+++.....||..+
T Consensus 320 eGaFs--~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l~~~~~~~~~~Wv~d 388 (473)
T KOG2276|consen 320 EGAFS--GPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVSMGHAGAPWVSD 388 (473)
T ss_pred cceee--CCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEeecCCCCceecC
Confidence 75431 222788999999999999999999999998888866651 3456666666666666544
No 50
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=100.00 E-value=2.5e-34 Score=284.04 Aligned_cols=267 Identities=20% Similarity=0.269 Sum_probs=207.9
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC--CCCCcEEEEeecccCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVPS 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~--~~~~~il~~aH~Dtvp~ 104 (356)
-++++++|++|++|||. ++++.++++|+.++|+++|+++++ +..+|+++.++|+. ++.|+|+|.|||||||+
T Consensus 3 ~~~~~~~l~~l~~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~----~~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRP--SKNEKEVSNFIVNWAKKLGLEVKQ----DEVGNVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred HHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHHHHcCCeEEE----eCCCeEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 36789999999999985 678999999999999999999876 45689999998653 23589999999999999
Q ss_pred CC----CCCCCCCCCeeeCCCCeEEecCcc---cchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 105 EP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 105 ~~----~~w~~~P~~~~~~~~g~~~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
++ .+|+.+||++.+ +||++||||++ |||+|++++|++++. .+. ++++|.++|+++||+|+ .|++++.
T Consensus 77 ~~~~~~~~w~~~p~~~~~-~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~-~~~~i~~~~~~dEE~g~-~Gs~~l~ 150 (477)
T TIGR01893 77 KNEDSLHDFEKDPIELII-DGDWLKARGTTLGADNGIGVAMGLAILED---NNL-KHPPLELLFTVDEETGM-DGALGLD 150 (477)
T ss_pred CCCCCCCCCCCCCeEEEE-eCCEEEECCccccccccHHHHHHHHHHhc---CCC-CCCCEEEEEEeccccCc-hhhhhcC
Confidence 75 379999999999 89999999995 999999999988764 333 46799999999999985 6999987
Q ss_pred ccccccCCceEEEEecCcc------CcCCc-ce----eEEe--eeeeEEEEEEEEe-cCCccCC-CCCC--CHHHHHHHH
Q 018435 178 DSHVFNSLNVGIVLDEGLA------STTED-YR----AFYA--ERCPWWLVIKARG-APGHGAK-LYDN--SAMENLFKS 240 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~g~~------~p~~~-~~----i~~~--~~G~~~~~v~~~G-~~~Hs~~-p~~g--nai~~~~~~ 240 (356)
... +. .+.+++.|.... .|++. .. +.+. ++|..+++|+++| +++|||. |+.+ ||+.+++++
T Consensus 151 ~~~-~~-~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~ 228 (477)
T TIGR01893 151 ENW-LS-GKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARV 228 (477)
T ss_pred hhh-cC-CcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHH
Confidence 642 22 344555542110 11111 11 1111 4789999999999 9999975 6555 999999999
Q ss_pred HHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc-
Q 018435 241 IESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP- 319 (356)
Q Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~- 319 (356)
+..+.+. ..++++.+.||. +.|+||++|++.+|+|.......+.+.+++.+.+..
T Consensus 229 i~~l~~~------------------~~~~v~~~~gg~------~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~ 284 (477)
T TIGR01893 229 LNELKEN------------------LNFRLSDIKGGS------KRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSE 284 (477)
T ss_pred HHhhhhc------------------CCeEEEEEeCCC------cccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHH
Confidence 9887653 124577778887 999999999999999998888888888877755442
Q ss_pred ---CCCCceEEEEee
Q 018435 320 ---ASRNMTFEVVIN 331 (356)
Q Consensus 320 ---~~~~~~~~~~~~ 331 (356)
...++.+++...
T Consensus 285 ~~~~~~~~~~~~~~~ 299 (477)
T TIGR01893 285 YSELEPNITIEVSKR 299 (477)
T ss_pred hcccCCCeEEEEEEC
Confidence 346777776543
No 51
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=100.00 E-value=5.2e-34 Score=280.29 Aligned_cols=261 Identities=16% Similarity=0.196 Sum_probs=207.9
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC--CCCCcEEEEeecccCCC
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVPS 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~--~~~~~il~~aH~Dtvp~ 104 (356)
..+++++|++|++|||. ++++.++++||.++++++|++++. +..+|+++.++++. .+.|.|+|.|||||||+
T Consensus 9 ~~~~~~~l~~Lv~ips~--S~~e~~~~~~l~~~~~~~G~~~~~----d~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~ 82 (485)
T PRK15026 9 PQPLWDIFAKICSIPHP--SYHEEQLAEYIVGWAKEKGFHVER----DQVGNILIRKPATAGMENRKPVVLQAHLDMVPQ 82 (485)
T ss_pred HHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhCCCEEEE----EecCeEEEEEcCCCCCCCCCEEEEEeeecccCC
Confidence 47899999999999995 678999999999999999998876 45679999886532 23588999999999999
Q ss_pred CC----CCCCCCCCCeeeCCCCeEEecCc---ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHh
Q 018435 105 EP----SKWSHHPFGAHLDSQGNIFARGS---QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (356)
Q Consensus 105 ~~----~~w~~~P~~~~~~~~g~~~GrG~---~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (356)
++ .+|+.+||++.+ ++|++||||+ +|||+|++++|.++ ++.+.. +++|.++|+++||+|+ .|++.+.
T Consensus 83 ~~~~~~~~w~~~P~~~~i-~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~~-~~~i~~l~t~dEE~G~-~ga~~l~ 156 (485)
T PRK15026 83 KNNDTVHDFTKDPIQPYI-DGEWVKARGTTLGADNGIGMASALAVL---ADENVV-HGPLEVLLTMTEEAGM-DGAFGLQ 156 (485)
T ss_pred CCCCccccCCCCCceEEE-cCCEEEeCCccccCccHHHHHHHHHHH---HhCCCC-CCCEEEEEEcccccCc-HhHHHhh
Confidence 64 279999999998 8999999999 59999999988765 445543 7899999999999996 6999886
Q ss_pred ccccccCCceEEEEecCccCcCCcceeEEee------------------eeeEEEEEEEEe-cCCccC-CCCCC--CHHH
Q 018435 178 DSHVFNSLNVGIVLDEGLASTTEDYRAFYAE------------------RCPWWLVIKARG-APGHGA-KLYDN--SAME 235 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~------------------~G~~~~~v~~~G-~~~Hs~-~p~~g--nai~ 235 (356)
.. ....++++++|... ...++.++ +|..+++|+++| +++||+ .++.| ||+.
T Consensus 157 ~~--~~~~~~~i~~e~~~-----~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~ 229 (485)
T PRK15026 157 SN--WLQADILINTDSEE-----EGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANK 229 (485)
T ss_pred hc--cCCcCEEEEeCCCC-----CCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHH
Confidence 52 33467888887531 12343333 466789999999 999999 57766 9999
Q ss_pred HHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHH
Q 018435 236 NLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVE 315 (356)
Q Consensus 236 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~ 315 (356)
.+++++..+.+ .++++++.++||+ +.|+||++|++.+++|....+..+.+.+.+.+
T Consensus 230 ~la~~l~~~~~------------------~~~~~v~~i~GG~------~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~~~ 285 (485)
T PRK15026 230 LLVRFLAGHAE------------------ELDLRLIDFNGGT------LRNAIPREAFATIAVAADKVDALKSLVNTYQE 285 (485)
T ss_pred HHHHHHHHhHh------------------hCCeEEEEEeCCC------ccCCCCCCcEEEEEEChhHHHHHHHHHHHHHH
Confidence 99999877431 1688999999999 99999999999999998876666666666654
Q ss_pred Hhc----cCCCCceEEEEe
Q 018435 316 EWA----PASRNMTFEVVI 330 (356)
Q Consensus 316 ~~~----~~~~~~~~~~~~ 330 (356)
.+. ....++.+++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~ 304 (485)
T PRK15026 286 ILKNELAEKEKNLALLLDS 304 (485)
T ss_pred HHHHHhcccCCCeEEEEEE
Confidence 444 233456665544
No 52
>PRK05469 peptidase T; Provisional
Probab=100.00 E-value=2.9e-34 Score=278.54 Aligned_cols=259 Identities=22% Similarity=0.230 Sum_probs=198.5
Q ss_pred hHHHHHHHhhhcccCCCCC--------cChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCC-CCCCcEEEEee
Q 018435 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~-~~~~~il~~aH 98 (356)
+.+++.|++|++|||.|.. .++.+++++|.++|+++|+++..+ +..+||++.++|+. ++.|+|+|+||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~---~~~~~v~~~~~g~~~~~~~~i~l~~H 78 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTL---DENGYVMATLPANVDKDVPTIGFIAH 78 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE---CCCeEEEEEecCCCCCCCCeEEEEEe
Confidence 5689999999999998622 347899999999999999963333 35779999998763 24589999999
Q ss_pred cccCCCCC----------------------CCCCCCCCCeee---CCCCeEEecCc----ccchHHHHHHHHHHHHHHHc
Q 018435 99 TDVVPSEP----------------------SKWSHHPFGAHL---DSQGNIFARGS----QDMKCVGMQYLEAIRRLKAS 149 (356)
Q Consensus 99 ~Dtvp~~~----------------------~~w~~~P~~~~~---~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~~~ 149 (356)
|||||+.+ ..|.++||.+.+ -..+.+||||+ +|||++++++|+|++.|+++
T Consensus 79 ~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~ 158 (408)
T PRK05469 79 MDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAH 158 (408)
T ss_pred ccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhC
Confidence 99998753 224444444332 03378999998 99999999999999999988
Q ss_pred CCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccCC-C
Q 018435 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-L 228 (356)
Q Consensus 150 ~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~-p 228 (356)
+..++++|+|+|+++||+| .|+++++.+. + ..+++++++.+ +.+ .+.++.+|..+++|+++|+++|++. |
T Consensus 159 ~~~~~g~v~~~f~~dEE~g--~Ga~~~~~~~-~-~~~~~~~~~~~---~~g--~~~~~~~g~~~~~i~v~Gk~~Ha~~~p 229 (408)
T PRK05469 159 PEIKHGDIRVAFTPDEEIG--RGADKFDVEK-F-GADFAYTVDGG---PLG--ELEYENFNAASAKITIHGVNVHPGTAK 229 (408)
T ss_pred CCCCCCCEEEEEecccccC--CCHHHhhhhh-c-CCcEEEEecCC---Ccc--eEEeccCceeEEEEEEeeecCCCCCCc
Confidence 7667899999999999987 4998886432 2 24566777642 333 4667788999999999999999875 7
Q ss_pred CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHH
Q 018435 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAE 307 (356)
Q Consensus 229 ~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~ 307 (356)
+.+ ||+..+++++..++++.... .......+++++.++| .|++|++++|+|+.+.++.+
T Consensus 230 ~~g~nAi~~~~~~i~~l~~~~~~~--------~~~~~~~~i~~g~i~g------------gp~~~~i~~diR~~~~e~~e 289 (408)
T PRK05469 230 GKMVNALLLAADFHAMLPADETPE--------TTEGYEGFYHLTSIKG------------TVEEAELSYIIRDFDREGFE 289 (408)
T ss_pred ccccCHHHHHHHHHHhCCCCCCCC--------CCCCceEEEEEEEEEE------------ccceEEEEEEEecCCHHHHH
Confidence 888 99999999998877543210 0011112455555554 48999999999999999999
Q ss_pred HHHHHHHHHhc
Q 018435 308 SLERRIVEEWA 318 (356)
Q Consensus 308 ~~~~~i~~~~~ 318 (356)
.+.++|++.++
T Consensus 290 ~i~~~i~~~~~ 300 (408)
T PRK05469 290 ARKALMQEIAK 300 (408)
T ss_pred HHHHHHHHHHH
Confidence 99999997776
No 53
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=273.39 Aligned_cols=261 Identities=17% Similarity=0.143 Sum_probs=202.6
Q ss_pred CChhHHHHHHHhhhcccC-------CCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 25 KSDDSIIERFRAYLQIDT-------SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s-------~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
...+++++.+++|++|+| .|.+++|.++++||.++|+++|++++. ++.+|++++++|.+++ |+|+|.|
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~----~~~~nl~a~~~g~~~~-~~l~l~g 81 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRI----DGIGNVFGRLPGPGPG-PALLVGS 81 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEecCCCCC-CeEEEEc
Confidence 345789999999999998 444667899999999999999999876 5678999999887654 8999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccH
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (356)
|+||||+++ ..|+++|++++|+|++.|++.+..++++|.|++++|||.+ +..|+
T Consensus 82 H~DtVp~~g----------------------~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs 139 (412)
T PRK12892 82 HLDSQNLGG----------------------RYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGS 139 (412)
T ss_pred cccCCCCCC----------------------cccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccH
Confidence 999999742 2356789999999999999998888999999999999984 44699
Q ss_pred HHHhcccccc----------C-------------CceEEEE-------------ecCc-cCcCC-cceeEEeeeeeEEEE
Q 018435 174 EKFADSHVFN----------S-------------LNVGIVL-------------DEGL-ASTTE-DYRAFYAERCPWWLV 215 (356)
Q Consensus 174 ~~~~~~~~~~----------~-------------~~~~~~~-------------~~g~-~~p~~-~~~i~~~~~G~~~~~ 215 (356)
++++++.... . .|.+++. +.|. .+|.+ ...++++++|..+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~ 219 (412)
T PRK12892 140 RAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYR 219 (412)
T ss_pred HHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEE
Confidence 9888531000 0 0111111 1110 01111 246899999999999
Q ss_pred EEEEecCCccCC-CC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCe
Q 018435 216 IKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (356)
Q Consensus 216 v~~~G~~~Hs~~-p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~ 291 (356)
|+++|+++|++. |+ .+ ||+..+++++..+.++... ....++++++.+++| . +.|+||++
T Consensus 220 i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~-----------~~~~~~~~vg~i~gg~~------~~NvIP~~ 282 (412)
T PRK12892 220 ITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPR-----------VCGPAVVTVGRVALDPG------SPSIIPGR 282 (412)
T ss_pred EEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEecCC------CCeEECCe
Confidence 999999999975 54 56 9999999999998765321 112268999999976 5 89999999
Q ss_pred EEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 292 AEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 292 ~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
|++++|+|+.|.++.+++.++|++.+.. ..+++++++.
T Consensus 283 a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~ 322 (412)
T PRK12892 283 VEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVD 322 (412)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 9999999999999999999999977762 2356666654
No 54
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=4.1e-33 Score=270.92 Aligned_cols=260 Identities=19% Similarity=0.251 Sum_probs=202.1
Q ss_pred ChhHHHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEe
Q 018435 26 SDDSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
..++++++|++|++|+|.++ +++|.++++||.++|+++|++++. +..+|++++++|.++..|+|+|.|
T Consensus 8 ~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~----~~~~n~~a~~~g~~~~~~~l~l~~ 83 (412)
T PRK12893 8 NGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSV----DAIGNLFGRRAGTDPDAPPVLIGS 83 (412)
T ss_pred CHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEeCCCCCCCCEEEEEe
Confidence 35789999999999998632 345899999999999999999875 456799999988654358999999
Q ss_pred ecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccH
Q 018435 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (356)
Q Consensus 98 H~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (356)
|+||||++ |..|+|+|++++|.|++.|++.+..++++|.|+|++|||.| ++.|+
T Consensus 84 H~DtVp~~----------------------g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~ 141 (412)
T PRK12893 84 HLDTQPTG----------------------GRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGS 141 (412)
T ss_pred cccCCCCC----------------------CcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccH
Confidence 99999974 23577999999999999999988888999999999999986 23588
Q ss_pred HHHhcccccc------C-------------------------CceEEEEec--Cc---cCcCCcceeEEeeeeeEEEEEE
Q 018435 174 EKFADSHVFN------S-------------------------LNVGIVLDE--GL---ASTTEDYRAFYAERCPWWLVIK 217 (356)
Q Consensus 174 ~~~~~~~~~~------~-------------------------~~~~~~~~~--g~---~~p~~~~~i~~~~~G~~~~~v~ 217 (356)
.++.+..... . .+..+.++. |. ..+ ....++++++|..+++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~i~~~~kG~~~~~i~ 220 (412)
T PRK12893 142 GVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEG-LPIGVVTGIQGIRWLEVT 220 (412)
T ss_pred HHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCC-CcEEEEeeecccEEEEEE
Confidence 8777542100 0 111111211 10 011 135788999999999999
Q ss_pred EEecCCccCC-CC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeEE
Q 018435 218 ARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEAE 293 (356)
Q Consensus 218 ~~G~~~Hs~~-p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~~ 293 (356)
++|+++|++. |+ .| ||+.++++++..|.++... .....+++++.+++| . +.|+||++|+
T Consensus 221 v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-----------~~~~~~~~vg~i~ggg~------~~NvVP~~a~ 283 (412)
T PRK12893 221 VEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-----------LAPDGVATVGRLRVEPN------SRNVIPGKVV 283 (412)
T ss_pred EEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-----------cCCCceEEEEEEEeeCC------CceEECCeeE
Confidence 9999999986 74 67 9999999999999776421 112368889999874 5 8999999999
Q ss_pred EEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 294 AGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 294 ~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
+++|+|++|.++.+++.++|++.+.. ...++++++.
T Consensus 284 ~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~ 321 (412)
T PRK12893 284 FTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVE 321 (412)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999987752 2356666654
No 55
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=5e-33 Score=270.21 Aligned_cols=261 Identities=16% Similarity=0.201 Sum_probs=201.7
Q ss_pred hhHHHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEee
Q 018435 27 DDSIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH 98 (356)
..++++.+.+|-+|.+. +.+++|.++++||.++|+++|++++. +..+|+++.++|.+++.|+|+|+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~----~~~gNl~a~~~g~~~~~~~l~~~~H 84 (414)
T PRK12891 9 GERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRV----DAMGNLFARRAGRDPDAAPVMTGSH 84 (414)
T ss_pred HHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEE----CCCCCEEEEecCCCCCCCeEEEEec
Confidence 35789999999988431 24567999999999999999999886 5678999999887655589999999
Q ss_pred cccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----cccHH
Q 018435 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (356)
Q Consensus 99 ~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (356)
+||||++ |..|||+|++++|+|++.|++.+..++++|.|+++++||.|+ +.|++
T Consensus 85 ~DtVp~g----------------------g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~ 142 (414)
T PRK12891 85 ADSQPTG----------------------GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSG 142 (414)
T ss_pred ccCCCCC----------------------ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHH
Confidence 9999975 456999999999999999999999999999999999999862 24666
Q ss_pred HHh------------------------ccccccC-------CceEEEEec--Ccc-CcC-CcceeEEeeeeeEEEEEEEE
Q 018435 175 KFA------------------------DSHVFNS-------LNVGIVLDE--GLA-STT-EDYRAFYAERCPWWLVIKAR 219 (356)
Q Consensus 175 ~~~------------------------~~~~~~~-------~~~~~~~~~--g~~-~p~-~~~~i~~~~~G~~~~~v~~~ 219 (356)
.+. +.+...+ .+..+.++. |.. +++ ....++++++|..+++|+++
T Consensus 143 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~ 222 (414)
T PRK12891 143 VFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLT 222 (414)
T ss_pred HHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEE
Confidence 442 2111000 011122221 100 011 23579999999999999999
Q ss_pred ecCCccC-CCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeEEEE
Q 018435 220 GAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEAEAG 295 (356)
Q Consensus 220 G~~~Hs~-~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~~~~ 295 (356)
|+++|++ .|+ .+ ||+..+++++..++++... .....+++++.++|| . +.|+||++|++.
T Consensus 223 Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~-----------~~~~~t~~vg~I~gG~~------~~NvVP~~~~~~ 285 (414)
T PRK12891 223 GVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR-----------DAPDARATVGMIDARPN------SRNTVPGECFFT 285 (414)
T ss_pred eECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEeeCC------CcceECCeEEEE
Confidence 9999998 565 46 9999999999998765321 112368999999986 5 899999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 296 FDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 296 ~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
+|+|++|.++.+.+.++|++.+.. ..+++++++..
T Consensus 286 ~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~ 322 (414)
T PRK12891 286 VEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQ 322 (414)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999999999999999876652 24566666654
No 56
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=6.7e-33 Score=269.36 Aligned_cols=263 Identities=20% Similarity=0.246 Sum_probs=201.6
Q ss_pred CChhHHHHHHHhhhcc-cCC-------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEE
Q 018435 25 KSDDSIIERFRAYLQI-DTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (356)
Q Consensus 25 ~~~~~~~~~l~~l~~i-~s~-------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~ 96 (356)
...+.+++.+++|++| +.. |.+++|.++++||.++|+++|++++. +..+|++++++|.++..|.|+|.
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~----~~~~nl~a~~~g~~~~~~~l~l~ 79 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRV----DAVGNLFGRLEGRDPDAPAVLTG 79 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEecCCCCCCCEEEEe
Confidence 3468899999999999 422 34667999999999999999999876 45689999997754335899999
Q ss_pred eecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----cccc
Q 018435 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDG 172 (356)
Q Consensus 97 aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G 172 (356)
||+||||++ |..|+|+|+|++++|++.|++.+..++++|.|++++|||.| +..|
T Consensus 80 gH~DtVp~~----------------------g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G 137 (413)
T PRK09290 80 SHLDTVPNG----------------------GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLG 137 (413)
T ss_pred cCccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCcccc
Confidence 999999974 34588999999999999999988888899999999999984 2358
Q ss_pred HHHHhcccc----------------------ccCCceEEEE---------------ecC-ccCcCC-cceeEEeeeeeEE
Q 018435 173 AEKFADSHV----------------------FNSLNVGIVL---------------DEG-LASTTE-DYRAFYAERCPWW 213 (356)
Q Consensus 173 ~~~~~~~~~----------------------~~~~~~~~~~---------------~~g-~~~p~~-~~~i~~~~~G~~~ 213 (356)
++.+++... -.+.+++++. +.| ..+|++ ...++.+++|..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~ 217 (413)
T PRK09290 138 SRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRR 217 (413)
T ss_pred HHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEE
Confidence 887764310 0012222211 000 002222 2468999999999
Q ss_pred EEEEEEecCCccC-CC-CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccC
Q 018435 214 LVIKARGAPGHGA-KL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQP 289 (356)
Q Consensus 214 ~~v~~~G~~~Hs~-~p-~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip 289 (356)
++|+++|+++|++ .| +.+ ||+..+++++..++++... .....+++++.+.+| . +.|+||
T Consensus 218 ~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~-----------~~~~~~~~~g~i~~g~~------~~NvIP 280 (413)
T PRK09290 218 YRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAA-----------HGPDLVATVGRLEVKPN------SVNVIP 280 (413)
T ss_pred EEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEEcCC------CCeEEC
Confidence 9999999999988 58 467 9999999999998765321 012357888888864 5 899999
Q ss_pred CeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 290 ~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++|++.+|+|+.|.++.+.+.++|++.+.. ...++++++..
T Consensus 281 ~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~ 323 (413)
T PRK09290 281 GEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIEL 323 (413)
T ss_pred CEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999999999977762 23456666543
No 57
>PRK08554 peptidase; Reviewed
Probab=100.00 E-value=7e-33 Score=270.24 Aligned_cols=284 Identities=19% Similarity=0.208 Sum_probs=191.9
Q ss_pred HHHHHHHhhhcccCCCCCc----ChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+++++|++|++|||+++.. .+.++++++.++|+++|++++.++.. +.+|+++.+ +. +.++|+|.||+||||+
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-~~~~l~~~~-~~--~~~~l~l~gH~DtVp~ 77 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-GYYAVYGEI-GE--GKPKLLFMAHFDVVPV 77 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-CceEEEEEe-CC--CCCEEEEEeccccCCC
Confidence 5789999999999986322 36899999999999999998876543 457999987 43 2378999999999999
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccc--cc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF 182 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~ 182 (356)
++..|+.+||++.+ +||++||||++|||++++++|+|++.|++.+ ++++|.|+|+++||+|+. ++.++++.. ..
T Consensus 78 ~~~~w~~~Pf~~~~-~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~-~~~~~~~~~~~~~ 153 (438)
T PRK08554 78 NPEEWNTEPFKLTV-KGDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGA-MAMHIAEKLREEG 153 (438)
T ss_pred CccccccCCceeEE-ECCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCcc-ccHHHHHHHHhcC
Confidence 76679999999999 8999999999999999999999999998753 578999999999999874 444665531 11
Q ss_pred cCCceEEEEecCccCcCCcceeEEeeeee-------------------EEEEEEEEecC-CccCCCCCC---CHHHHHHH
Q 018435 183 NSLNVGIVLDEGLASTTEDYRAFYAERCP-------------------WWLVIKARGAP-GHGAKLYDN---SAMENLFK 239 (356)
Q Consensus 183 ~~~~~~~~~~~g~~~p~~~~~i~~~~~G~-------------------~~~~v~~~G~~-~Hs~~p~~g---nai~~~~~ 239 (356)
...+++++.+. +....++.+++|. .++.+++.|.+ +|++.+..+ +++..+++
T Consensus 154 ~~~~~~iv~Ep-----t~~~~~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~ 228 (438)
T PRK08554 154 KLPKYMINADG-----IGMKPIIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASH 228 (438)
T ss_pred CCCCEEEEeCC-----CCCcchhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHH
Confidence 23567777753 3211122233332 23444455554 999987655 45666666
Q ss_pred HHHHHHcchhhhHHHHHhccc---ccCCceeeeEeeeecCCCC---C--------------------------CCccccc
Q 018435 240 SIESVRRFRASQFDLVKAGLK---AEGEVVSVNMAFLKAGTPS---P--------------------------NGFVMNL 287 (356)
Q Consensus 240 ~~~~i~~~~~~~~~~~~~~~~---~~~~~~~v~~~~i~~g~~~---~--------------------------~~~~~nv 287 (356)
++..+..+... +..++. ......++++....+|..- + ..-..|+
T Consensus 229 ~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~ 304 (438)
T PRK08554 229 FLRESNVLAVS----LEGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNV 304 (438)
T ss_pred HHhhcCceEEE----EeeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccce
Confidence 66554422100 000000 0001122222222222100 0 0014555
Q ss_pred c---CCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEe
Q 018435 288 Q---PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVI 330 (356)
Q Consensus 288 i---p~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 330 (356)
+ |++|++.+|+|+.+ .+.+++.++|++.+.....++++++..
T Consensus 305 ~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~~~~ 349 (438)
T PRK08554 305 YSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVEIRT 349 (438)
T ss_pred EEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEEEEe
Confidence 5 99999999999987 688999999998776323566666653
No 58
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=100.00 E-value=8.9e-33 Score=268.03 Aligned_cols=255 Identities=16% Similarity=0.187 Sum_probs=195.7
Q ss_pred hHHHHHHHhhhcccCCCC--------CcChhHHHHHHHHHHHHCCCc-eEEEeecCC-CceEEEEecCCCCC-CCcEEEE
Q 018435 28 DSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLE-SQTLEFAKN-KPLILLKWPGSNPQ-LPSILLN 96 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~-~~nv~~~~~g~~~~-~~~il~~ 96 (356)
+++++.+.+|++|+|.|. +.++++++++|.++|+++|++ +.. |+ .+||++.++|+... .|+|+|.
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~----d~~~gnv~~~~~~~~~~~~~~i~~~ 78 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHY----DEKNGYVIATIPSNTDKDVPTIGFL 78 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEE----cCCceEEEEEecCCCCCCCCEEEEE
Confidence 578999999999999742 115568999999999999996 654 45 89999999886541 3899999
Q ss_pred eecccCCCCC-C-------------------------CCCCCCCCe------eeCCCCeEEecCcccchHHHHHHHHHHH
Q 018435 97 SHTDVVPSEP-S-------------------------KWSHHPFGA------HLDSQGNIFARGSQDMKCVGMQYLEAIR 144 (356)
Q Consensus 97 aH~Dtvp~~~-~-------------------------~w~~~P~~~------~~~~~g~~~GrG~~D~k~~~a~~l~a~~ 144 (356)
||||||+..+ . .|.++||.. ...+++.++| +|||+|+|++|.|++
T Consensus 79 aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G---~D~KgglAa~l~A~~ 155 (410)
T TIGR01882 79 AHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG---ADDKAGIAEIMTAAD 155 (410)
T ss_pred EecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeec---ccCHHHHHHHHHHHH
Confidence 9999998522 1 688889885 3236779999 799999999999999
Q ss_pred HHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCc
Q 018435 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH 224 (356)
Q Consensus 145 ~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~H 224 (356)
.|++++..++++|.|+|+++||+| .|++.+..+. + ..+++++++. +|.+ .+.+..+|..+++|+++|+++|
T Consensus 156 ~L~e~~~~~~g~I~~~ft~dEE~g--~Ga~~l~~~~-~-~~~~~~~i~g---ep~g--~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 156 YLINHPEIKHGTIRVAFTPDEEIG--RGAHKFDVKD-F-NADFAYTVDG---GPLG--ELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HHHhCCCCCCCCEEEEEECcccCC--cCcchhhhhh-c-CccEEEEeCC---CCCC--eEEEccccceEEEEEEEEEecC
Confidence 999864345889999999999987 3888776532 2 3566777763 4554 3566667999999999999999
Q ss_pred cCCCC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCC
Q 018435 225 GAKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPP 302 (356)
Q Consensus 225 s~~p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~ 302 (356)
++.+. .+ ||+..+.+++..+...... ..+.-+.+.+++| ..|.+|++|++.+|+|+.+
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~~~-------------~~t~~~~g~i~~g-------~i~giPd~a~l~~diR~~~ 286 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDDRP-------------EYTEGREGFFHLL-------SIDGTVEEAKLHYIIRDFE 286 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcCCC-------------ccccceeEEEEEE-------eEEEecCEEEEEEEEecCC
Confidence 99764 56 9998888776555432110 0011112344554 5677999999999999999
Q ss_pred CCCHHHHHHHHHHHhc
Q 018435 303 TTDAESLERRIVEEWA 318 (356)
Q Consensus 303 ~~~~~~~~~~i~~~~~ 318 (356)
.++.+.+.++|++++.
T Consensus 287 ~e~~e~i~~~i~~i~~ 302 (410)
T TIGR01882 287 KENFQERKELMKRIVE 302 (410)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987775
No 59
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1e-31 Score=261.18 Aligned_cols=261 Identities=18% Similarity=0.209 Sum_probs=199.3
Q ss_pred hhHHHHHHHhhhcccCC-------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 27 DDSIIERFRAYLQIDTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~-------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
..++++.+.+|.+||.. +.+++|.++++||.++|+++|++++. ...+|++++++|+.++.|+|+|.||+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~----~~~~nlia~~~g~~~~~~~l~~~~H~ 83 (414)
T PRK12890 8 GERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRR----DAAGNLFGRLPGRDPDLPPLMTGSHL 83 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEE----cCCCcEEEEeCCCCCCCCEEEEeCcc
Confidence 46788999999988832 23678999999999999999999886 35679999998764445899999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc----cccHHH
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAEK 175 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~~ 175 (356)
||||++ |..|||+|++++|++++.|++.+..++++|.|+++++||.|+ +.|++.
T Consensus 84 DtVp~~----------------------g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~ 141 (414)
T PRK12890 84 DTVPNG----------------------GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRA 141 (414)
T ss_pred cCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHH
Confidence 999974 457999999999999999999888889999999999999742 357766
Q ss_pred Hhccccc----------------------cCCceEEE--Eec-------------Ccc-C-cCCcceeEEeeeeeEEEEE
Q 018435 176 FADSHVF----------------------NSLNVGIV--LDE-------------GLA-S-TTEDYRAFYAERCPWWLVI 216 (356)
Q Consensus 176 ~~~~~~~----------------------~~~~~~~~--~~~-------------g~~-~-p~~~~~i~~~~~G~~~~~v 216 (356)
+.+.... ...+.+.+ .+. |.. . ......++.+++|..|++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i 221 (414)
T PRK12890 142 LAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGAVAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAV 221 (414)
T ss_pred HHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEE
Confidence 6543110 00111111 100 000 0 0123568999999999999
Q ss_pred EEEecCCccCC-CC-CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeE
Q 018435 217 KARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEA 292 (356)
Q Consensus 217 ~~~G~~~Hs~~-p~-~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~ 292 (356)
+++|+++|++. |+ .+ ||+..+++++..|.++... .....+++++.+++| . +.|+||++|
T Consensus 222 ~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~-----------~~~~~~~~~g~i~~gg~------~~NvIP~~a 284 (414)
T PRK12890 222 TVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARA-----------LLHDLVATVGRLDVEPN------AINVVPGRV 284 (414)
T ss_pred EEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEECCC------CceEECCeE
Confidence 99999999985 74 55 9999999999999875421 112367889999864 5 999999999
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 293 EAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 293 ~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
++++|+|+.|.++.+++.++|++.+.. ...++++++..
T Consensus 285 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 324 (414)
T PRK12890 285 VFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELER 324 (414)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999999999999999876652 23456666543
No 60
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=100.00 E-value=1.1e-31 Score=259.68 Aligned_cols=260 Identities=13% Similarity=0.144 Sum_probs=203.5
Q ss_pred hHHHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeec
Q 018435 28 DSIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
+++++.|.+|-+|.+. +.+..+.++++|+.+|++++|++++. |..+|++++++|++++.|+|++++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~----D~~gN~~~~~~g~~~~~~~i~~gsHl 78 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRF----DDVGNLYGRLVGTEFPEETILTGSHI 78 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEE----cCCCcEEEEecCCCCCCCeEEEeccc
Confidence 5677788888887331 23567899999999999999999876 78899999999998878999999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccHHH
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEK 175 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~ 175 (356)
||||.+ |..|++.|+++.|++++.|++++..++++|.++++++||.+ ++.|++.
T Consensus 79 Dtv~~g----------------------G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~ 136 (406)
T TIGR03176 79 DTVVNG----------------------GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKN 136 (406)
T ss_pred cCCCCC----------------------CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHH
Confidence 999986 67899999999999999999999999999999999999975 1457777
Q ss_pred Hhcc---c---ccc--------------------------CCceEEEEec--CccC--cCCcceeEEeeeeeEEEEEEEE
Q 018435 176 FADS---H---VFN--------------------------SLNVGIVLDE--GLAS--TTEDYRAFYAERCPWWLVIKAR 219 (356)
Q Consensus 176 ~~~~---~---~~~--------------------------~~~~~~~~~~--g~~~--p~~~~~i~~~~~G~~~~~v~~~ 219 (356)
+... . ... .++..+-++. |... .+....++++.+|..+++|+++
T Consensus 137 ~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~ 216 (406)
T TIGR03176 137 IFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLK 216 (406)
T ss_pred HhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEE
Confidence 7631 0 000 0111222222 2211 2235788999999999999999
Q ss_pred ecCCccCCCCC--C-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeec-CCCCCCCccccccCCeEEEE
Q 018435 220 GAPGHGAKLYD--N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPNGFVMNLQPSEAEAG 295 (356)
Q Consensus 220 G~~~Hs~~p~~--g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-g~~~~~~~~~nvip~~~~~~ 295 (356)
|+++|++.|++ + ||+.++++++..+.++... .....+++++.+++ +. +.|+||++|++.
T Consensus 217 GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-----------~~~~~~~tvG~I~~gg~------~~NvIP~~a~~~ 279 (406)
T TIGR03176 217 GEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-----------IGDPLVLTFGKVEPVPN------TVNVVPGETTFT 279 (406)
T ss_pred EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEEcCC------ceEEECCeEEEE
Confidence 99999998654 3 9999999999988764321 12235888999984 55 899999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEe
Q 018435 296 FDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVI 330 (356)
Q Consensus 296 ~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 330 (356)
+|+|+++.+..+.+.++|++.+.. ...++++++..
T Consensus 280 ~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~ 316 (406)
T TIGR03176 280 IDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDL 316 (406)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999999888888876652 34677777653
No 61
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.98 E-value=6.9e-31 Score=254.25 Aligned_cols=257 Identities=15% Similarity=0.187 Sum_probs=193.5
Q ss_pred HHHHHHhhhcccCC--------CCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 30 IIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 30 ~~~~l~~l~~i~s~--------s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
+++.+..+-++.+. +++++|.++++||.++|+++|++++. +..+||+++++|+.++.|+|+|+||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~----~~~~nl~a~~~g~~~~~~~l~~~~H~Dt 78 (401)
T TIGR01879 3 LWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRF----DEVGNLIGRKEGTEPPLEVVLSGSHIDT 78 (401)
T ss_pred HHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEE----ecCCcEEEEecCCCCCCCEEEEeccccc
Confidence 55666666666321 34678999999999999999999886 4568999999887654589999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC----ccccHHHHh
Q 018435 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEKFA 177 (356)
Q Consensus 102 vp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~~~ 177 (356)
||.+ |..|++.|++++|++++.|++.+..++++|.|+++++||.+ ++.|++++.
T Consensus 79 V~~g----------------------g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~ 136 (401)
T TIGR01879 79 VVNG----------------------GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMV 136 (401)
T ss_pred CCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHh
Confidence 9974 33466789999999999999999999999999999999973 346888886
Q ss_pred cccc------cc--------------CCceEEEEe---------------cCcc--CcCCcceeEEeeeeeEEEEEEEEe
Q 018435 178 DSHV------FN--------------SLNVGIVLD---------------EGLA--STTEDYRAFYAERCPWWLVIKARG 220 (356)
Q Consensus 178 ~~~~------~~--------------~~~~~~~~~---------------~g~~--~p~~~~~i~~~~~G~~~~~v~~~G 220 (356)
.+.. .. ..+..++.. -|.. ..+..+.++.+++|..|++|+++|
T Consensus 137 ~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G 216 (401)
T TIGR01879 137 GLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNG 216 (401)
T ss_pred cccchhHHHhCcCCCCCCHHHHHHHcCCCcccccccccccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEE
Confidence 5310 00 001111000 0000 011125789999999999999999
Q ss_pred cCCccCCCC--CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecC-CCCCCCccccccCCeEEEEE
Q 018435 221 APGHGAKLY--DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEAEAGF 296 (356)
Q Consensus 221 ~~~Hs~~p~--~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g-~~~~~~~~~nvip~~~~~~~ 296 (356)
+++|++.++ .+ ||+.++++++..++++... .....+.+++.+++| . +.|+||++|++.+
T Consensus 217 ~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~-----------~~~~~~~~vg~i~~g~~------~~NvVP~~a~~~~ 279 (401)
T TIGR01879 217 ESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKR-----------MGDPTVGTVGKVEARPN------GVNVIPGKVTFTL 279 (401)
T ss_pred ECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEecCC------ceEEECCEEEEEE
Confidence 999998654 46 9999999999999876422 012246788888875 4 7899999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEE
Q 018435 297 DIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVV 329 (356)
Q Consensus 297 diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~ 329 (356)
|+|+.|.++.+++.++|++.+.. ...++++++.
T Consensus 280 diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~ 314 (401)
T TIGR01879 280 DLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIE 314 (401)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEE
Confidence 99999999999999999877752 2345566554
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.97 E-value=1.2e-29 Score=255.55 Aligned_cols=270 Identities=14% Similarity=0.137 Sum_probs=202.2
Q ss_pred hcCCCCChhHHHHHHHhhhcccCCC-----------CCcChhHHHHHHHHHHHHCCC-ceEEEeecCCCceEEEEecCCC
Q 018435 20 FSSPAKSDDSIIERFRAYLQIDTSQ-----------PNPDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSN 87 (356)
Q Consensus 20 ~~~~~~~~~~~~~~l~~l~~i~s~s-----------~~~~e~~~~~~l~~~l~~~g~-~~~~~~~~~~~~nv~~~~~g~~ 87 (356)
...-....+++++.+.+|.+|+... .+..+.++++|+.+||+++|+ +++. |..+|++++++|.+
T Consensus 173 ~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~----D~~GNl~~~~~g~~ 248 (591)
T PRK13590 173 FGAEPVLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHI----DAVGNVVGRYKGST 248 (591)
T ss_pred hCCCchHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeE----CCCCCEEEEecCCC
Confidence 4455566789999999999986521 245678999999999999999 7765 77899999999987
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++.|+|++++||||||.+ |.+|+++|++++|++++.|++.++.++++|.|+++++||.
T Consensus 249 ~~~~~v~~gsHlDTV~~g----------------------G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 249 PQAKRLLTGSHYDTVRNG----------------------GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEG 306 (591)
T ss_pred CCCCeEEEecccccCCCC----------------------CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCcc
Confidence 767899999999999875 5679999999999999999999998889999999999997
Q ss_pred C----ccccHHHHh--------cc----cc----------c------------cCCceEEEEec--Ccc--CcCCcceeE
Q 018435 168 G----GHDGAEKFA--------DS----HV----------F------------NSLNVGIVLDE--GLA--STTEDYRAF 205 (356)
Q Consensus 168 g----~~~G~~~~~--------~~----~~----------~------------~~~~~~~~~~~--g~~--~p~~~~~i~ 205 (356)
+ ++.|++.+. +. +. + ..+...+-++. |.. ..+....++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV 386 (591)
T PRK13590 307 QRYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIV 386 (591)
T ss_pred ccCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEE
Confidence 4 235777532 10 00 0 00111122211 110 001246899
Q ss_pred EeeeeeEEEEEEEEecCCccCCCC-C-C-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeec-CCCCCC
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLY-D-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPN 281 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~-~-g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-g~~~~~ 281 (356)
++++|..+++|+++|+++|+|.++ . + ||+..+++++..+.++... ...++++++.+.. |.
T Consensus 387 ~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~------------~~~~v~tVG~i~~~Gg---- 450 (591)
T PRK13590 387 TSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ------------DGDSVGTVGMLEVPGG---- 450 (591)
T ss_pred eeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc------------CCCcEEEEEEEEECCC----
Confidence 999999999999999999999754 3 4 9999999999888764211 1113456666652 33
Q ss_pred CccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEeecc
Q 018435 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVINSL 333 (356)
Q Consensus 282 ~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~ 333 (356)
+.|+||++|++++|+|+.+.++.+.+.++|++.+.. ...++++++.....
T Consensus 451 --~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~~~ 502 (591)
T PRK13590 451 --SINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEETMR 502 (591)
T ss_pred --CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Confidence 899999999999999999999999998888766552 34677777764333
No 63
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.97 E-value=1.4e-28 Score=247.46 Aligned_cols=271 Identities=11% Similarity=0.088 Sum_probs=202.0
Q ss_pred hcCCCCChhHHHHHHHhhhcccC---C--------CCCcChhHHHHHHHHHHHHCCCc-eEEEeecCCCceEEEEecCCC
Q 018435 20 FSSPAKSDDSIIERFRAYLQIDT---S--------QPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSN 87 (356)
Q Consensus 20 ~~~~~~~~~~~~~~l~~l~~i~s---~--------s~~~~e~~~~~~l~~~l~~~g~~-~~~~~~~~~~~nv~~~~~g~~ 87 (356)
..+.+...+++++.+.+|.+|+. . +.+..+.++++|+.+||+++|++ ++. |..+||+++++|.+
T Consensus 173 ~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~----D~~gNv~~~~~g~~ 248 (591)
T PRK13799 173 FGYTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEI----DAVGNVVGRYKAAD 248 (591)
T ss_pred hCCChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeE----CCCCCEEEEcCCCC
Confidence 44455667899999999999962 1 12456789999999999999998 886 78899999999987
Q ss_pred CCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 88 ~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
++.|+|++++|+||||.+ |.+|+-+|+++.|++++.|++.++.++++|.|+.+++||.
T Consensus 249 ~~~p~v~~gSHlDTV~~g----------------------G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 249 DDAKTLITGSHYDTVRNG----------------------GKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEG 306 (591)
T ss_pred CCCCeEEEeccccccCCC----------------------CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc
Confidence 777999999999999864 4556679999999999999999999999999999999997
Q ss_pred C----ccccHHHHhc------------ccc-----ccC-----------------CceEEEEec--Ccc--CcCCcceeE
Q 018435 168 G----GHDGAEKFAD------------SHV-----FNS-----------------LNVGIVLDE--GLA--STTEDYRAF 205 (356)
Q Consensus 168 g----~~~G~~~~~~------------~~~-----~~~-----------------~~~~~~~~~--g~~--~p~~~~~i~ 205 (356)
. ++.|++.+.- .+. +.. ++..+-++- |.. ..+....++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV 386 (591)
T PRK13799 307 QRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIV 386 (591)
T ss_pred cCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEE
Confidence 2 2457777751 011 000 011111111 100 001256899
Q ss_pred EeeeeeEEEEEEEEecCCccCCCC--CC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCC
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLY--DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNG 282 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~--~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~ 282 (356)
++++|..+++|+++|+++|+|.++ .+ ||+.++++++..++++... . .....+++++.++++.
T Consensus 387 ~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~------~----~~~~~v~tVG~I~~~~----- 451 (591)
T PRK13799 387 TSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ------D----QHASLVATMGQLNVPS----- 451 (591)
T ss_pred eeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh------c----CCCCcEEEEEEEEecC-----
Confidence 999999999999999999999754 35 9999999999998765321 0 1122466777777431
Q ss_pred ccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhcc--CCCCceEEEEee
Q 018435 283 FVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEVVIN 331 (356)
Q Consensus 283 ~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~ 331 (356)
++.|+||++|++.+|+|+++.++.+.+.++|++.+.. ...++++++...
T Consensus 452 ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~~ 502 (591)
T PRK13799 452 GSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAELA 502 (591)
T ss_pred CCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 1899999999999999999999999887777755541 345666665543
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-19 Score=167.70 Aligned_cols=273 Identities=17% Similarity=0.147 Sum_probs=186.1
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceE------EEee---cCCCceEEEEecCCCCCCCcEEEEe
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ------TLEF---AKNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~------~~~~---~~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
.+++.+++.+|++.||++.+.+|...+++|...|+++.+--+ .++. +.++.||+|-++|.. .+.+|++.|
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~-~k~tvvl~g 85 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGT-SKRTVVLHG 85 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCC-CCceEEEee
Confidence 588999999999999998889999999999999998864211 1111 127889999999954 458999999
Q ss_pred ecccCCCCC-CCCCCCCCCee--------------------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCccc
Q 018435 98 HTDVVPSEP-SKWSHHPFGAH--------------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (356)
Q Consensus 98 H~Dtvp~~~-~~w~~~P~~~~--------------------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (356)
|+|||.+.+ .....-.|.+. .+.+++++|||+.|||+|+|+.|+.++.+.+.. ...+|
T Consensus 86 H~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~~-~~~GN 164 (553)
T COG4187 86 HFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAART-DRQGN 164 (553)
T ss_pred ccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhCC-CCCCc
Confidence 999998865 22222233330 136789999999999999999999999999874 66899
Q ss_pred EEEEEeeccccCccccHHHHhccc----cccCCce--EEEEecCcc-Cc-CCcceeEEeeeeeEEEEEEEEecCCccCCC
Q 018435 157 VYLSFVPDEEIGGHDGAEKFADSH----VFNSLNV--GIVLDEGLA-ST-TEDYRAFYAERCPWWLVIKARGAPGHGAKL 228 (356)
Q Consensus 157 i~~~~~~~EE~g~~~G~~~~~~~~----~~~~~~~--~~~~~~g~~-~p-~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p 228 (356)
|.|+.+|+||.-+ +|++..+... +..+.++ +|..|.-.. .+ ...-.+++|..|.+-.-.-|.|...|+|.|
T Consensus 165 lLf~a~pdEE~~s-~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~~ 243 (553)
T COG4187 165 LLFMAVPDEEVES-RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYP 243 (553)
T ss_pred EEEEeccchhhhc-ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCCc
Confidence 9999999999886 6888776531 1111222 333332111 11 112478999999998888999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccc-cCCeEEEEEEEecCCCCCH
Q 018435 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL-QPSEAEAGFDIRVPPTTDA 306 (356)
Q Consensus 229 ~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nv-ip~~~~~~~diR~~~~~~~ 306 (356)
..| ||-..++.+..+++ ++..-.+.. ++.... +++-+-....+- +.|| .|.++.+.+++=+.. .+.
T Consensus 244 f~Gvnan~maSei~~~le-~N~~l~dr~-~Ge~t~-PPs~L~qkDlKe--------~Y~VqTp~~a~~~fN~l~h~-~ta 311 (553)
T COG4187 244 FEGVNANFMASEITRRLE-LNADLADRV-DGEITP-PPSCLEQKDLKE--------SYNVQTPERAWLYFNWLYHS-RTA 311 (553)
T ss_pred ccCCCHHHHHHHHHHHhh-cChhhhhhh-CCeeCC-CcHhhhhhhhhh--------hccccCcchhhhhheehhhc-CCH
Confidence 999 98877777777764 322111111 010000 001111112221 4555 677777777776553 455
Q ss_pred HHHHHHHH
Q 018435 307 ESLERRIV 314 (356)
Q Consensus 307 ~~~~~~i~ 314 (356)
.++.++++
T Consensus 312 ~~~~d~l~ 319 (553)
T COG4187 312 KELFDRLK 319 (553)
T ss_pred HHHHHHHH
Confidence 66666555
No 65
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.79 E-value=5.7e-18 Score=157.29 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=97.5
Q ss_pred CCcChhHHHHHHHHHHHHCCCceEEEeec--------C--------CCceEEEEecCCCCCCCcEEEEeecccCCCCCCC
Q 018435 45 PNPDYTNASKFILAQAEALSLESQTLEFA--------K--------NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK 108 (356)
Q Consensus 45 ~~~~e~~~~~~l~~~l~~~g~~~~~~~~~--------~--------~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~ 108 (356)
.+++|.++++||.++|+++|++++..... . ...||++.++|+. .+.|++.||+|||++...
T Consensus 50 gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~- 126 (346)
T PRK10199 50 GSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSD- 126 (346)
T ss_pred CCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCC-
Confidence 46789999999999999999988754321 1 1257999998854 378999999999975321
Q ss_pred CCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 109 WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 109 w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
...++. .+-++++|+.|||+|++++|++++.|++.+ ++++|.|+++++||.|. .|+++++++
T Consensus 127 -~~~~~~-----~~g~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl-~GS~~~~~~ 188 (346)
T PRK10199 127 -ADVDAN-----LGGLTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGK-LGAENLLKR 188 (346)
T ss_pred -CccccC-----CCCcccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCc-HHHHHHHHh
Confidence 111222 223789999999999999999999998664 57899999999999995 799999986
No 66
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.78 E-value=6.2e-19 Score=152.79 Aligned_cols=85 Identities=38% Similarity=0.679 Sum_probs=78.4
Q ss_pred EEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccH
Q 018435 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (356)
Q Consensus 94 l~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (356)
+|++||||||. ..+|.++||++.+ ++|++||||+.|+|+++++++.+++.|++++..++++|.|+|+++||.|+..|+
T Consensus 1 ll~~H~Dtv~~-~~~w~~~pf~~~~-~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVPG-PEGWKHDPFELSI-EDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCST-GGGSSSSTTSEEE-ETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccCC-cCcCCCCCcccEE-ECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 68999999994 6899999999999 999999999999999999999999999988889999999999999999974499
Q ss_pred HHHhccc
Q 018435 174 EKFADSH 180 (356)
Q Consensus 174 ~~~~~~~ 180 (356)
+.+++++
T Consensus 79 ~~l~~~~ 85 (189)
T PF01546_consen 79 KHLLEEG 85 (189)
T ss_dssp HHHHHHC
T ss_pred hhhhhhc
Confidence 9999873
No 67
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.68 E-value=1.1e-15 Score=143.78 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=108.4
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccCCC--
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~-- 104 (356)
.+.++++|++|+++|++ ++.|.++++++.++|+++|++++. ++.+|+++.++|+. +.|+|+|.||||+|..
T Consensus 2 ~~~~~~lLk~Lv~~~s~--SG~E~~V~~~l~~~l~~~g~ev~~----D~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~V 74 (343)
T TIGR03106 2 TDYLTETLLALLAIPSP--TGFTDAVVRYVAERLEDLGIEYEL----TRRGAIRATLPGRE-ATPARAVVTHLDTLGAMV 74 (343)
T ss_pred hHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEE----CCCeEEEEEECCCC-CCCeEEEEEeecccccee
Confidence 46689999999999996 689999999999999999998875 78999999987743 2479999999999910
Q ss_pred --------------CCC------------------------C-C------------CCCCCC---ee-------------
Q 018435 105 --------------EPS------------------------K-W------------SHHPFG---AH------------- 117 (356)
Q Consensus 105 --------------~~~------------------------~-w------------~~~P~~---~~------------- 117 (356)
++- + . ...+++ ..
T Consensus 75 ~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~ 154 (343)
T TIGR03106 75 RELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVR 154 (343)
T ss_pred eEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHH
Confidence 100 0 0 011222 00
Q ss_pred ----------------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc
Q 018435 118 ----------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (356)
Q Consensus 118 ----------------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (356)
...+++++||+ .|||+|+++++++++.|++.+..++.+|+++|+++||.|+
T Consensus 155 lGV~~Gd~v~~~~~~~~~~~~~i~gr~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 155 LGISVGDFVAFDPQPEFLANGFIVSRH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred cCCCCCCEEEECCccEEecCCEEEEEe-cccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCc
Confidence 01679999997 8999999999999999998876778999999999999994
No 68
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.57 E-value=4.6e-14 Score=134.49 Aligned_cols=287 Identities=18% Similarity=0.111 Sum_probs=199.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCce-EEEeec-------CCCceEEEEecCCCCCCCcEEEEe
Q 018435 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLES-QTLEFA-------KNKPLILLKWPGSNPQLPSILLNS 97 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~-~~~~~~-------~~~~nv~~~~~g~~~~~~~il~~a 97 (356)
..+.+++.+.+|++||+. |..+++++.++.+|++.+|+.+ ..+... .+..-+.+.+++..+.-|.+.+.+
T Consensus 3 ~~~~l~~~F~~~~kI~~~--S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~s 80 (414)
T COG2195 3 KMERLLDRFLELVKIPTQ--SKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFIS 80 (414)
T ss_pred chHHHHHHHHHHeeCCCC--CCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccc
Confidence 347899999999999996 6799999999999999999987 322211 122235666877665568899999
Q ss_pred ecccCCCC-----CCCC---------------------CCCCCCeeeCCCCeEEecCc----ccchHHHHHHHHHHHHHH
Q 018435 98 HTDVVPSE-----PSKW---------------------SHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLK 147 (356)
Q Consensus 98 H~Dtvp~~-----~~~w---------------------~~~P~~~~~~~~g~~~GrG~----~D~k~~~a~~l~a~~~l~ 147 (356)
|+||+|.. ..+| .+.|.....+.+..+.--|+ .|+|+|++.++.++..++
T Consensus 81 h~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~ 160 (414)
T COG2195 81 HHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLR 160 (414)
T ss_pred cccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHh
Confidence 99999521 1223 13444332212233333444 499999999999999999
Q ss_pred HcC-CCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCccCcCCcceeEEeeeeeEEEEEEEEecCCccC
Q 018435 148 ASG-FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA 226 (356)
Q Consensus 148 ~~~-~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~ 226 (356)
+.. .-+.++|++.|+++||.|+ +|+..+.-. ++ ..++++.+|.| + ...|.+...+...+++++.|+..|++
T Consensus 161 ~~~~~i~h~~i~~g~s~~Ee~g~-rg~~~~~~a-~f-~a~~ay~iDGg---~--~g~i~~ea~~~~~~~~~~~g~~~h~~ 232 (414)
T COG2195 161 EKHPEIPHGGIRGGFSPDEEIGG-RGAANKDVA-RF-LADFAYTLDGG---P--VGEIPREAFNAAAVRATIVGPNVHPG 232 (414)
T ss_pred hcCccccccCeEEEecchHHhhh-hhhhhccHH-hh-hcceeEecCCC---c--cCeeeeeccchheeeeeeeccCcCcc
Confidence 652 3457999999999999996 688866653 33 35788999843 2 23788888899999999999999998
Q ss_pred CCCC-C-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCC
Q 018435 227 KLYD-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304 (356)
Q Consensus 227 ~p~~-g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~ 304 (356)
.... . |++..+.+....+.... ....++...+..+.+. ..|.|.+++.....+|.....
T Consensus 233 ~a~~~~i~a~~~a~e~~~~~~~~~-------------~~e~t~~~~Gv~~~~~------~~~~V~~~s~~~~~iR~~d~~ 293 (414)
T COG2195 233 SAKGKMINALLLAAEFILELPLEE-------------VPELTEGPEGVYHLGD------STNSVEETSLNLAIIRDFDNL 293 (414)
T ss_pred chHHHHhhHHHhhhhhhhcCCccc-------------ccccccccceEEeccc------cccchhhhhhhhhhhhhcchh
Confidence 6433 3 66665555444332211 1123555667777776 889999999999999999887
Q ss_pred CHHHHHHHHHHHhcc------CCCCceEEEEeecccccCCCcc
Q 018435 305 DAESLERRIVEEWAP------ASRNMTFEVVINSLSLLHTNPK 341 (356)
Q Consensus 305 ~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 341 (356)
..+...+.+++.+.. ...++++++...+++|...+.+
T Consensus 294 ~~~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Yp~~~~~~~~ 336 (414)
T COG2195 294 LFRARKDSMKDVVEEMAASLGKLAGAELEVKDSYPGWKIKPDS 336 (414)
T ss_pred HHHHhHHHHHHHHHHHHHHhhhccceEEEEeccccCcCCCCCc
Confidence 777777777655541 2356666666655555444433
No 69
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.56 E-value=7.4e-14 Score=130.20 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=119.1
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC-----
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV----- 102 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv----- 102 (356)
++++++|++|++++++ ++.|.++.+++.+.|++++.+++. |+.+|+++.++|.+ +.+.|++.||||++
T Consensus 2 ~~~~~~LkeL~~~~gp--sG~E~eVr~~~~~el~~~~~ev~~----D~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~ 74 (355)
T COG1363 2 EELLELLKELLEAPGP--SGYEEEVRDVLKEELEPLGDEVEV----DRLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVK 74 (355)
T ss_pred hHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHHHhCCceEE----cCCCcEEEEecCCC-CCccEEEEeecceeeeeEE
Confidence 5689999999999995 789999999999999999998877 89999999998833 33669999999999
Q ss_pred -----------CCCCCCCC-------------------------------------CCC--CC-ee--------------
Q 018435 103 -----------PSEPSKWS-------------------------------------HHP--FG-AH-------------- 117 (356)
Q Consensus 103 -----------p~~~~~w~-------------------------------------~~P--~~-~~-------------- 117 (356)
+++ +|. ..| |. ..
T Consensus 75 ~I~~~G~Lr~~~IG--G~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~l 152 (355)
T COG1363 75 EIEDDGFLRFVPIG--GWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEEL 152 (355)
T ss_pred EECCCceEEEEEcC--CcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhc
Confidence 111 010 000 00 00
Q ss_pred ---------------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccc
Q 018435 118 ---------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (356)
Q Consensus 118 ---------------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (356)
...++++-+| +.|||.|++++|++++.| + +..++.+++++|+..||.| ++|++..... .
T Consensus 153 GI~vGd~v~~~~~~~~l~~~~i~sk-alDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVG-lrGA~~~a~~--i 226 (355)
T COG1363 153 GIRVGDFVVFDPRFRELANGRVVSK-ALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVG-LRGAKTSAFR--I 226 (355)
T ss_pred CCCCCCEEEEcCceEEecCCcEEee-eccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhc-cchhhccccc--c
Confidence 1155888888 789999999999999999 4 6678899999999999999 4788876653 2
Q ss_pred cCCceEEEEecCc
Q 018435 183 NSLNVGIVLDEGL 195 (356)
Q Consensus 183 ~~~~~~~~~~~g~ 195 (356)
+.++++.+|...
T Consensus 227 -~pd~aiavd~~~ 238 (355)
T COG1363 227 -KPDIAIAVDVTP 238 (355)
T ss_pred -CCCEEEEEeccc
Confidence 357788888643
No 70
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.56 E-value=1.8e-14 Score=113.86 Aligned_cols=104 Identities=22% Similarity=0.312 Sum_probs=88.3
Q ss_pred EeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHHcchhhhHHHHHhcccccCCceeeeEeeeecCCCCCCCcc
Q 018435 206 YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFV 284 (356)
Q Consensus 206 ~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~ 284 (356)
++++|..+++|+++|+++|++.|+.+ ||+..+++++..|.++...+..... .......+++++.+++|. .
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~i~gG~------~ 71 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPE---EFFPGPPTLNIGSIEGGT------A 71 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHH---HCTCTSEEEEEEEEEEES------S
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccc---cccccccceeEeecccCC------c
Confidence 58899999999999999999999999 9999999999999876432110000 112355899999999998 9
Q ss_pred ccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 285 MNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 285 ~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.|+||++|++.+++|++|.++.++++++|++.+.
T Consensus 72 ~n~ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~ 105 (111)
T PF07687_consen 72 PNVIPDEATLTVDIRYPPGEDLEEIKAEIEAAVE 105 (111)
T ss_dssp TTEESSEEEEEEEEEESTCHHHHHHHHHHHHHHH
T ss_pred CCEECCEEEEEEEEECCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998775
No 71
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.55 E-value=1.1e-13 Score=130.48 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=115.1
Q ss_pred HHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC---------
Q 018435 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV--------- 102 (356)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv--------- 102 (356)
++|++|+++|++ |+.|.++++++.+++++++.+++. |+.+|+++.++|...+.|+|++.||||+|
T Consensus 2 ~~L~~L~~~~gp--SG~E~~v~~~i~~~l~~~~~~v~~----D~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~ 75 (350)
T TIGR03107 2 NKIKEVTELQGT--SGFEHPIRDYLRQDITPLVDQVET----DGLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKP 75 (350)
T ss_pred hHHHHHHhCCCC--CCCcHHHHHHHHHHHHhhCCEEEE----CCCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECC
Confidence 579999999995 789999999999999999988776 88999999987641234799999999999
Q ss_pred -------CCCC----------------CC-------------CC--------CCCCC-ee--------------------
Q 018435 103 -------PSEP----------------SK-------------WS--------HHPFG-AH-------------------- 117 (356)
Q Consensus 103 -------p~~~----------------~~-------------w~--------~~P~~-~~-------------------- 117 (356)
|.++ .+ -. ..++. ..
T Consensus 76 ~G~l~~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd 155 (350)
T TIGR03107 76 DGTFRVVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGD 155 (350)
T ss_pred CceEEEEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCC
Confidence 1110 00 00 00110 00
Q ss_pred ---------eC-CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCce
Q 018435 118 ---------LD-SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (356)
Q Consensus 118 ---------~~-~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (356)
.. .++++.|| +.||+.|+++++++++.|++.. +..+++++|++.||.|. +|++..... . ++|+
T Consensus 156 ~v~~~~~~~~~~~~~~i~~k-alDdR~g~a~l~e~l~~l~~~~--~~~~l~~~~tvqEEvG~-rGA~~aa~~--i-~pD~ 228 (350)
T TIGR03107 156 VIVPQTETILTANGKNVISK-AWDNRYGVLMILELLESLKDQE--LPNTLIAGANVQEEVGL-RGAHVSTTK--F-NPDI 228 (350)
T ss_pred EEEECCCeEEEcCCCEEEEe-ccccHHHHHHHHHHHHHhhhcC--CCceEEEEEEChhhcCc-hhhhhHHhh--C-CCCE
Confidence 01 34678898 5799999999999999998763 57899999999999994 899965553 3 3578
Q ss_pred EEEEecCcc
Q 018435 188 GIVLDEGLA 196 (356)
Q Consensus 188 ~~~~~~g~~ 196 (356)
++++|.+..
T Consensus 229 aI~vDv~~~ 237 (350)
T TIGR03107 229 FFAVDCSPA 237 (350)
T ss_pred EEEEecCCc
Confidence 999997643
No 72
>PRK09961 exoaminopeptidase; Provisional
Probab=99.52 E-value=2.6e-13 Score=128.14 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=116.0
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC--------
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV-------- 102 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv-------- 102 (356)
+++|++|+++|++ ++.|.++++++.++++++|++++. |+.+|+++.+.|. +.|+|+|.||||+|
T Consensus 3 ~~~L~~L~~~~s~--sG~E~~v~~~i~~~l~~~~~~v~~----D~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~ 74 (344)
T PRK09961 3 LSLLKALSEADAI--ASSEQEVRQILLEEADRLQKEVRF----DGLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSIS 74 (344)
T ss_pred HHHHHHHHhCCCC--CCChHHHHHHHHHHHHhhCCEEEE----CCCCCEEEEEcCC--CCCEEEEEeccceeceEEEEEC
Confidence 3679999999996 789999999999999999998775 7899999988663 23799999999999
Q ss_pred --------CCCCCCCCC----------------------------CCCCe-e----------------------------
Q 018435 103 --------PSEPSKWSH----------------------------HPFGA-H---------------------------- 117 (356)
Q Consensus 103 --------p~~~~~w~~----------------------------~P~~~-~---------------------------- 117 (356)
|.++ |.. .++.- .
T Consensus 75 ~~G~l~~~~vGG--~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~ 152 (344)
T PRK09961 75 REGAIDVLPVGN--VRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTF 152 (344)
T ss_pred CCceEEEEeCCC--ccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEccee
Confidence 1211 110 11110 0
Q ss_pred -eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCc
Q 018435 118 -LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 118 -~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~ 195 (356)
...++++.|| +.||+.|+++++++++.+++.+ +..+|+++|+..||.|. +|++..... + ++|+++++|.+.
T Consensus 153 ~~~~~~~i~gk-alDnR~g~~~lle~l~~l~~~~--~~~~v~~~~tvqEEvG~-rGa~~aa~~--i-~pd~~I~vDv~~ 224 (344)
T PRK09961 153 QVLPHQRVMGK-AFDDRLGCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGL-RGGQTATRA--V-SPDVAIVLDTAC 224 (344)
T ss_pred EEecCCEEEEe-echhhHhHHHHHHHHHHhhhcC--CCceEEEEEEcccccch-HHHHHHHhc--c-CCCEEEEEeccC
Confidence 0156788898 6899999999999999998663 57899999999999995 799876653 3 368899999764
No 73
>PRK09864 putative peptidase; Provisional
Probab=99.49 E-value=9e-13 Score=124.05 Aligned_cols=145 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecCCCceEEEEecCCCCCCCcEEEEeecccC--------
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV-------- 102 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~nv~~~~~g~~~~~~~il~~aH~Dtv-------- 102 (356)
+++|++|+++|++ |+.|.++++++.+++++++.+++. |..+|+++.. |. +.++|++.||||+|
T Consensus 3 ~~~L~~L~~~~g~--SG~E~~v~~~l~~~l~~~~dev~~----D~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~ 73 (356)
T PRK09864 3 IELLQQLCEASAV--SGDEQEVRDILINTLEPCVNEITF----DGLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHID 73 (356)
T ss_pred HHHHHHHHcCCCC--CCchHHHHHHHHHHHHHhCCEEEE----CCCCCEEEEe-CC--CCcEEEEEecccccCEEEEEEC
Confidence 4679999999995 789999999999999999998876 8899999986 53 23699999999999
Q ss_pred --------CCCCCCCCC--------------C-CCCee------------------------------------------
Q 018435 103 --------PSEPSKWSH--------------H-PFGAH------------------------------------------ 117 (356)
Q Consensus 103 --------p~~~~~w~~--------------~-P~~~~------------------------------------------ 117 (356)
|.++ |.. . ++.+.
T Consensus 74 ~~G~l~~~~lGG--~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~v 151 (356)
T PRK09864 74 ESGFLRFTTIGG--WWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEI 151 (356)
T ss_pred CCCeEEEEeCCC--cCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCC
Confidence 1111 110 0 01111
Q ss_pred -----------eCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCc
Q 018435 118 -----------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (356)
Q Consensus 118 -----------~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (356)
...++++.|| +.||+.|+++++++++.|++ +..+++++|+..||.| ++|++..... + +.|
T Consensus 152 GD~v~~~~~~~~l~~~~i~~k-alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvG-lrGA~~aa~~--i-~PD 222 (356)
T PRK09864 152 GDFISPEANFACWGEDKVVGK-ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVG-LRGAQTSAEH--I-KPD 222 (356)
T ss_pred CCEEEECCCcEEEcCCEEEEE-eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcc-hHHHHHHHhc--C-CCC
Confidence 0156788898 67999999999999999965 5789999999999999 5899976663 3 357
Q ss_pred eEEEEecCc
Q 018435 187 VGIVLDEGL 195 (356)
Q Consensus 187 ~~~~~~~g~ 195 (356)
+++++|.+.
T Consensus 223 iaIavDvt~ 231 (356)
T PRK09864 223 VVIVLDTAV 231 (356)
T ss_pred EEEEEeccc
Confidence 899999764
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=109.82 Aligned_cols=148 Identities=27% Similarity=0.321 Sum_probs=110.9
Q ss_pred ChhHHHHHHHhhhcc-cCCCCC-cChhHHHHHHHHHHHHCCCceEE----Eee-----------------cCCCceEEEE
Q 018435 26 SDDSIIERFRAYLQI-DTSQPN-PDYTNASKFILAQAEALSLESQT----LEF-----------------AKNKPLILLK 82 (356)
Q Consensus 26 ~~~~~~~~l~~l~~i-~s~s~~-~~e~~~~~~l~~~l~~~g~~~~~----~~~-----------------~~~~~nv~~~ 82 (356)
...+.++.++++.++ |....+ .+|..+.+++.+.+.++.-..+. ++. .-+.-|++..
T Consensus 55 ~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVk 134 (834)
T KOG2194|consen 55 SEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVK 134 (834)
T ss_pred HHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEe
Confidence 457888889999988 443222 35668888888777765322111 111 0134689999
Q ss_pred ecCCCCCCC-cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEE
Q 018435 83 WPGSNPQLP-SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSF 161 (356)
Q Consensus 83 ~~g~~~~~~-~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 161 (356)
+.++..... .+++.||+|+||.++ |+.||..++|.+|+++|.+.+....++++|+|+|
T Consensus 135 i~~k~~~~~~~lLlnaHfDSvpt~~---------------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLf 193 (834)
T KOG2194|consen 135 ISPKNGNDKNALLLNAHFDSVPTGP---------------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFLF 193 (834)
T ss_pred cCCCCCCccceeeeeccccccCCCC---------------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEEe
Confidence 976554434 899999999999865 8999999999999999999988877899999999
Q ss_pred eeccccCccccHHHHhcccccc-CCceEEEEecCc
Q 018435 162 VPDEEIGGHDGAEKFADSHVFN-SLNVGIVLDEGL 195 (356)
Q Consensus 162 ~~~EE~g~~~G~~~~~~~~~~~-~~~~~~~~~~g~ 195 (356)
..+||.+ +.|+..++.++.+. .....+.++.++
T Consensus 194 NgaEE~~-L~gsH~FItQH~w~~~~ka~INLea~G 227 (834)
T KOG2194|consen 194 NGAEESG-LLGSHAFITQHPWSKNIKAVINLEAAG 227 (834)
T ss_pred cCcccch-hhhcccceecChhhhhhheEEeccccC
Confidence 9999998 57999999975554 456677776543
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.96 E-value=1e-09 Score=94.33 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=65.6
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (356)
.|++.||+|+++.. .++ -+++|+.||.+|++++|++++.|++.+.+++++|+|+|+.+||.|. .
T Consensus 2 ~ivi~aH~Ds~~~~--------------~~~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl-~ 65 (179)
T PF04389_consen 2 YIVIGAHYDSVGGD--------------ADG-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGL-L 65 (179)
T ss_dssp EEEEEEE--BESCC--------------C-T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTS-H
T ss_pred EEEEEeecCCCCCc--------------CCC-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCc-c
Confidence 68999999999821 111 3345999999999999999999999777789999999999999995 6
Q ss_pred cHHHHhcc--ccccCCceEEEEecC
Q 018435 172 GAEKFADS--HVFNSLNVGIVLDEG 194 (356)
Q Consensus 172 G~~~~~~~--~~~~~~~~~~~~~~g 194 (356)
|+++++++ ....+....+.+|..
T Consensus 66 GS~~~~~~~~~~~~~~~~~inlD~~ 90 (179)
T PF04389_consen 66 GSRAFVEHDHEELDNIAAVINLDMI 90 (179)
T ss_dssp HHHHHHHHHHCHHHHEEEEEEECSS
T ss_pred chHHHHHhhhcccccceeEEecccc
Confidence 99999973 222334566777653
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.83 E-value=1e-08 Score=94.64 Aligned_cols=69 Identities=28% Similarity=0.372 Sum_probs=56.8
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhccccccCCceEEEEecCc
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGL 195 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~~~g~ 195 (356)
.++++.|| +.||+.|+++++++++.|++.+. +.+++++|++.||.|. +|+.....+ . ++|+++++|...
T Consensus 124 ~~~~i~gk-alDdR~g~~~lle~l~~l~~~~~--~~~v~~v~tvqEEvG~-rGA~~aa~~--i-~PD~ai~vD~~~ 192 (292)
T PF05343_consen 124 GNGRIVGK-ALDDRAGCAVLLELLRELKEKEL--DVDVYFVFTVQEEVGL-RGAKTAAFR--I-KPDIAIAVDVTP 192 (292)
T ss_dssp TTTEEEET-THHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTS-HHHHHHHHH--H--CSEEEEEEEEE
T ss_pred CCCEEEEE-eCCchhHHHHHHHHHHHHhhcCC--CceEEEEEEeeeeecC-cceeecccc--c-CCCEEEEEeeec
Confidence 67789999 67999999999999999998754 5899999999999995 799977664 2 357888888653
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=98.01 E-value=1.6e-05 Score=78.09 Aligned_cols=52 Identities=29% Similarity=0.309 Sum_probs=46.9
Q ss_pred cCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcccc
Q 018435 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (356)
Q Consensus 127 rG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (356)
.|+.||..|++++|++++.|+... ++++|.|+++.+||.| +.|+.+++.+..
T Consensus 224 ~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~G-l~GS~~~~~~~~ 275 (435)
T COG2234 224 PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESG-LLGSEAYVKRLS 275 (435)
T ss_pred CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhc-ccccHHHHhcCC
Confidence 399999999999999999999875 7899999999999999 579999998744
No 78
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0002 Score=63.93 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=94.2
Q ss_pred hhHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC-------CCceEEEEecCCCCCCCcEEEEeec
Q 018435 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK-------NKPLILLKWPGSNPQLPSILLNSHT 99 (356)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~-------~~~nv~~~~~g~~~~~~~il~~aH~ 99 (356)
..+..+.|..+. +|.+-.+.+..++.+||.+.++.+|+.++.-...+ ...|+++++..+. ...+++.+|+
T Consensus 50 ~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A--~r~lVlachy 126 (338)
T KOG3946|consen 50 WNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNA--SRYLVLACHY 126 (338)
T ss_pred HHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCc--chheeeeccc
Confidence 345555554443 23332367889999999999999999877533222 2458999985443 3688999999
Q ss_pred ccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcC----CCCcccEEEEEeecccc-------C
Q 018435 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG----FQPVRSVYLSFVPDEEI-------G 168 (356)
Q Consensus 100 Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~-------g 168 (356)
|+--..+ |. .+ |+.|...++|+++..++.|.+.- -...-.+.++|+-+||. .
T Consensus 127 dsk~~p~--~~------~v---------gatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~D 189 (338)
T KOG3946|consen 127 DSKIFPG--GM------FV---------GATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPED 189 (338)
T ss_pred ccccCCC--cc------eE---------eeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCcc
Confidence 9986532 11 12 88899999999999998876421 12456799999999993 3
Q ss_pred ccccHHHHhcc
Q 018435 169 GHDGAEKFADS 179 (356)
Q Consensus 169 ~~~G~~~~~~~ 179 (356)
|+.|++.+.++
T Consensus 190 SlYGsRhLA~~ 200 (338)
T KOG3946|consen 190 SLYGSRHLAAK 200 (338)
T ss_pred ccchHHHHHHH
Confidence 67899998875
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=97.79 E-value=9.2e-05 Score=75.55 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=66.7
Q ss_pred CCceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHH---HHcCC
Q 018435 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL---KASGF 151 (356)
Q Consensus 75 ~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l---~~~~~ 151 (356)
...|++++++|+......|++++|-|++-. |+.|..+|++.+++..+.+ +++++
T Consensus 337 ki~NIig~I~Gs~epD~~ViigahrDSw~~-----------------------Ga~dp~sGta~Ll~i~~~~~~~~k~gw 393 (702)
T KOG2195|consen 337 KIQNIIGKIEGSEEPDRYVIIGAHRDSWTF-----------------------GAIDPNSGTALLLEIARALSKLKKRGW 393 (702)
T ss_pred eeeeEEEEEecCcCCCeEEEEecccccccc-----------------------CCcCCCccHHHHHHHHHHHHHHHHcCC
Confidence 457999999995544579999999999854 5778888888887777654 57889
Q ss_pred CCcccEEEEEeeccccCccccHHHHhcc
Q 018435 152 QPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
+|.|+|+|+.+.+||.|. .|+-.+++.
T Consensus 394 rP~RtI~F~sWdAeEfGl-iGStE~~E~ 420 (702)
T KOG2195|consen 394 RPRRTILFASWDAEEFGL-LGSTEWAEE 420 (702)
T ss_pred CccceEEEEEccchhccc-cccHHHHHH
Confidence 999999999999999996 588888875
No 80
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0013 Score=62.07 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=97.1
Q ss_pred HHHHHHHHHCCCceEEEeec------CCCceEEEEec-CC-----CCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCC
Q 018435 54 KFILAQAEALSLESQTLEFA------KNKPLILLKWP-GS-----NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQ 121 (356)
Q Consensus 54 ~~l~~~l~~~g~~~~~~~~~------~~~~nv~~~~~-g~-----~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~ 121 (356)
+.+.+-+...|+....-... .-.+|+.+++. |. +...|+|++.+|+||..+.+ |-. +
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap--~ls------v--- 233 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP--GLS------V--- 233 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC--CCC------C---
Confidence 45555566667654421110 12468999887 33 23579999999999997753 111 1
Q ss_pred CeEEecCcccchHHHHHHHHHHHHHHHcC----CCCcccEEEEEeeccccCccccHHHHhcc--ccc-cCCceEEEEecC
Q 018435 122 GNIFARGSQDMKCVGMQYLEAIRRLKASG----FQPVRSVYLSFVPDEEIGGHDGAEKFADS--HVF-NSLNVGIVLDEG 194 (356)
Q Consensus 122 g~~~GrG~~D~k~~~a~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~g~~~G~~~~~~~--~~~-~~~~~~~~~~~g 194 (356)
|+--|.+|++++|+.++.+.+.- -..+.++.|+++.+--.. ..|.+.+++. ..+ +.+++++|+|.-
T Consensus 234 ------gADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lN-yqGTkkWLe~dd~~lq~nVdfaiCLdti 306 (555)
T KOG2526|consen 234 ------GADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLN-YQGTKKWLEFDDADLQKNVDFAICLDTI 306 (555)
T ss_pred ------CCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCcccc-ccchhhhhhcchHHHHhcccEEEEhhhh
Confidence 77677889999999999887632 234788999998865443 4799998874 222 257888888631
Q ss_pred ccCcCCcceeEEeeeeeEEEEEEEEecCCccCCCCCC-CHHHHHHHHHHHHH
Q 018435 195 LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVR 245 (356)
Q Consensus 195 ~~~p~~~~~i~~~~~G~~~~~v~~~G~~~Hs~~p~~g-nai~~~~~~~~~i~ 245 (356)
+. +. .|---|.+.|+.. .-+....+.++.+.
T Consensus 307 g~----------~~----------s~l~mHvsKpP~dnt~i~qffr~l~svA 338 (555)
T KOG2526|consen 307 GR----------KT----------SGLFMHVSKPPSDNTVIAQFFRRLNSVA 338 (555)
T ss_pred cc----------cc----------CceEEEccCCCCcchHHHHHHHHhhhhc
Confidence 10 00 1222477887755 55556666665553
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=96.43 E-value=0.016 Score=51.76 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=56.7
Q ss_pred CcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHc---CCCCcccEEEEEeecccc
Q 018435 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS---GFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 91 ~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~~EE~ 167 (356)
|.|++.+.||+...-.+ .++|+.+.-.|++++|++++.|.+. .-.++++|.|.|+.+|-.
T Consensus 1 ~iIlv~armDs~s~F~~-----------------~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~ 63 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHD-----------------LSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF 63 (234)
T ss_pred CEEEEEecccchhcccC-----------------CCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc
Confidence 57999999999865321 0348888899999999999999765 234689999999999999
Q ss_pred CccccHHHHhcc
Q 018435 168 GGHDGAEKFADS 179 (356)
Q Consensus 168 g~~~G~~~~~~~ 179 (356)
|. -|++.++.+
T Consensus 64 dY-iGS~R~vyD 74 (234)
T PF05450_consen 64 DY-IGSSRFVYD 74 (234)
T ss_pred cc-cchHHHHHH
Confidence 96 588888754
No 82
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=95.56 E-value=0.16 Score=47.55 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCccc
Q 018435 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (356)
Q Consensus 77 ~nv~~~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (356)
.|+++.-.+ ...++++.+|.|+... |..||-.|+++.++++..|...+. .
T Consensus 179 y~~Ia~~~~---en~vv~i~AH~DHW~~-----------------------G~tDN~lg~~~AV~~~~~lr~~~~----~ 228 (486)
T COG4882 179 YNVIAVDGG---ENGVVLIGAHLDHWYT-----------------------GFTDNILGVAQAVETAGRLRGRGL----A 228 (486)
T ss_pred EEEEEecCC---CCCceEEeechhhhhh-----------------------cccchhhhHHHHHHHHHHHhhcCc----c
Confidence 456554422 2369999999999976 466889999999999999988763 3
Q ss_pred EEEEEeeccccCcc--------ccHHHHhcc
Q 018435 157 VYLSFVPDEEIGGH--------DGAEKFADS 179 (356)
Q Consensus 157 i~~~~~~~EE~g~~--------~G~~~~~~~ 179 (356)
.-++.+++||.|+. .|++.+++.
T Consensus 229 ~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 229 AGLVVFTAEEHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred eeEEEEeccccCCCCCcceeecccchHHHhh
Confidence 56677778998742 366666664
No 83
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=93.81 E-value=1.4 Score=43.71 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+-+.+.|+|++.|.- --.-...++++.+.+++.|++++.++.. -+.+.+++.=+|+.. .|.++..-+-..
T Consensus 155 ~~~~~aRdL~n~P~n--~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l~Y~g~--- 228 (468)
T cd00433 155 EGVNLARDLVNTPAN--DLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVLEYKGK--- 228 (468)
T ss_pred HHHHHHHHhhcCCcc--cCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEEEECCC---
Confidence 344566777777763 2345788999999999999999987743 256666666666653 355554433221
Q ss_pred CCCCCCCCCCCeeeCCCCeEEecC---------ccc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 105 EPSKWSHHPFGAHLDSQGNIFARG---------SQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 105 ~~~~w~~~P~~~~~~~~g~~~GrG---------~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
.. ...|.-. | ..|.-|=.| ..+ |++|.|+.+.+++++.+.+. +.+|+.+....|-
T Consensus 229 ~~---~~~~i~L-V-GKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~~--~vnV~~i~~~~EN 295 (468)
T cd00433 229 GA---SKKPIAL-V-GKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKL--PVNVVGVLPLAEN 295 (468)
T ss_pred CC---CCCcEEE-E-cCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcCC--CceEEEEEEeeec
Confidence 11 0112111 1 222222111 112 35889999999999998864 7889998888885
No 84
>PRK05015 aminopeptidase B; Provisional
Probab=93.09 E-value=2.3 Score=41.21 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=73.2
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHC---CCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeeccc
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL---SLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDV 101 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~---g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dt 101 (356)
+...+.|+|++.|+. --.-...++...++++++ +++++.++.. -+.+.+++.=+|+.. .|.++ .-+|
T Consensus 101 ~~~~~aRdLvn~P~n--~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~-pP~lv-~L~Y-- 174 (424)
T PRK05015 101 KIIDWVRDTINAPAE--ELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSER-PPVLL-ALDY-- 174 (424)
T ss_pred HHHHHHHHHhcCCcc--cCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCC-CCEEE-EEEe--
Confidence 456677888888874 223466677777777776 5777776643 255667766666653 34444 3333
Q ss_pred CCCCCCCCCCCCCC-eeeCCCCeEEecCc-------------ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 102 VPSEPSKWSHHPFG-AHLDSQGNIFARGS-------------QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 102 vp~~~~~w~~~P~~-~~~~~~g~~~GrG~-------------~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
-|.+.. ..|.. .-+ .+|.-|=-|- +| ++|.|+.+.+++.+.+.+ ++.+|..++...|-.
T Consensus 175 ~~~g~~---~~~v~~aLV-GKGITFDSGG~sLKps~~M~~MK~D-MgGAAaV~ga~~~a~~~~--l~~nV~~il~~aENm 247 (424)
T PRK05015 175 NPTGDP---DAPVYACLV-GKGITFDSGGYSIKPSAGMDSMKSD-MGGAATVTGALALAITRG--LNKRVKLFLCCAENL 247 (424)
T ss_pred cCCCCC---CCCeeEEEe-cCceEecCCCccCCCCcCHHHhhcc-hhHHHHHHHHHHHHHhcC--CCceEEEEEEecccC
Confidence 333221 12221 122 2222222211 33 477788898988887775 468899999888864
No 85
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=92.68 E-value=1.6 Score=40.68 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred HHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeecC----CC-------------c-eEEEEecCCC-CCCC
Q 018435 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NK-------------P-LILLKWPGSN-PQLP 91 (356)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~----~~-------------~-nv~~~~~g~~-~~~~ 91 (356)
+.+.|+|++.|.. --.-...++++.+.++++|++++.++..+ +. | -++.++.|.. ...+
T Consensus 1 vn~aRdL~n~P~n--~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~ 78 (311)
T PF00883_consen 1 VNLARDLVNTPPN--ILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKK 78 (311)
T ss_dssp HHHHHHHHHS-TT--TSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSE
T ss_pred ChHHHhhhCCChh--hcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 4577889998884 34568899999999999999988776421 11 2 3445565554 3345
Q ss_pred cEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 92 ~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
+|+|.|-==|...++ ..-.|-..-. +.-.|++|.|+.+.+++++.+.+. +.+|+.+....|-
T Consensus 79 ~i~LVGKGiTFDtGG--~~lKp~~~M~---------~Mk~DM~GAAaV~ga~~aia~lk~--~vnV~~~l~~~EN 140 (311)
T PF00883_consen 79 PIALVGKGITFDTGG--LSLKPSGGME---------GMKYDMGGAAAVLGAMRAIAKLKL--PVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEEEEEEEEEE-T--TSSSCSTTGG---------GGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE
T ss_pred cEEEEcceEEEecCC--ccCCCCcchh---------hcccCcchHHHHHHHHHHHHHcCC--CceEEEEEEcccc
Confidence 666665422222221 1111111100 223457889999999999998764 5889888888875
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=91.10 E-value=0.36 Score=47.57 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=38.9
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHH
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
+++.|.|+ ..||+.++.+++.+++.+. .+...++++++..||.|+ +|+.
T Consensus 250 ~~efI~s~-rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs-~ga~ 298 (462)
T PRK02256 250 DRSLIGAY-GQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGS-EGNT 298 (462)
T ss_pred ccceeecc-ccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCC-cchh
Confidence 56777777 5699999999999997664 245688999999999996 4544
No 87
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=90.48 E-value=5 Score=40.23 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=74.0
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceE-EEeec----CCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ-TLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~-~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
+.+.+.|+|++.|.. --.-...++...+.+.+.|++++ .++.. -+.+.+++.=+|+.. .|.++.. +|. +
T Consensus 213 ~~vn~ARdLvn~P~N--~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~-pPrli~L-~Y~--g 286 (569)
T PTZ00412 213 HCVNEARNLGNLRED--EGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRH-EPYLVVF-EYI--G 286 (569)
T ss_pred HHHHHHHHhccCChh--hcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCC-CCEEEEE-EeC--C
Confidence 344567788887773 22346778888887888899886 55432 255666766666642 3444443 332 2
Q ss_pred CCCCCCCCCCCCeeeCCCCeEEecCc---------cc---chHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 104 SEPSKWSHHPFGAHLDSQGNIFARGS---------QD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 104 ~~~~~w~~~P~~~~~~~~g~~~GrG~---------~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
.... ..|.-. + ..|.-|=.|- .+ |++|.|+.+.+++++.+.+. +.+|+.++...|-.
T Consensus 287 ~~~~---~~~iaL-V-GKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~Lkl--pvnVv~iiplaENm 355 (569)
T PTZ00412 287 NPRS---SAATAL-V-GKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQL--PVNVVAAVGLAENA 355 (569)
T ss_pred CCCC---CCcEEE-E-cCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcCC--CeEEEEEEEhhhcC
Confidence 1110 122221 1 2222222211 11 35788899999999988754 67898888888753
No 88
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=89.22 E-value=1.2 Score=44.34 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=42.8
Q ss_pred ceeeeEeeeecCCCCCCCccccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeeccc
Q 018435 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLS 334 (356)
Q Consensus 265 ~~~v~~~~i~~g~~~~~~~~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (356)
..|+|++.++++ |+++.+++++|++++++.+++.++|++.+. ..++++++.....|
T Consensus 337 ~~t~n~g~i~~~------------~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~--~~~~~v~~~~~~~p 392 (477)
T TIGR01893 337 ESSLNLGVVKTK------------ENKVIFTFLIRSSVESDKDYVTEKIESIAK--LAGARVEVSAGYPS 392 (477)
T ss_pred EeeeeEEEEEEc------------CCEEEEEEEeCCCCchhHHHHHHHHHHHhh--hcCeEEEEecCCCc
Confidence 357777777743 789999999999999999999999998775 34566665443333
No 89
>PRK02813 putative aminopeptidase 2; Provisional
Probab=85.94 E-value=0.88 Score=44.54 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccc---cHH
Q 018435 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD---GAE 174 (356)
Q Consensus 121 ~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~---G~~ 174 (356)
++.+.|+ ..||+.++.+++.++..+.+ ...++++++..||.|+ + |+.
T Consensus 225 ~e~i~s~-~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs-~~~~GA~ 274 (428)
T PRK02813 225 GEFISSG-RLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGS-ATKQGAD 274 (428)
T ss_pred CCEEEEe-cchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCC-CCCcccC
Confidence 4566665 67999999999999876642 5689999999999996 5 665
No 90
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=84.99 E-value=24 Score=35.10 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=75.7
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+.+.+.|+|++.|+. --.-...++++.+.++++|++++.++.. -+.+.+++.=+|+.. .|.++..-+- +.
T Consensus 172 ~~~~~aRdL~n~P~n--~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~prli~l~Y~---g~ 245 (483)
T PRK00913 172 EGVNLARDLVNEPPN--ILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSAN-PPRLIVLEYK---GG 245 (483)
T ss_pred HHHHHHHHhhCCChh--hcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCC-CCeEEEEEEC---CC
Confidence 344566777777763 2345788999999999999999977643 256667776667653 3555444332 11
Q ss_pred CCCCCCCCCCCe-----eeCCCCeEEecC--c---ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeecccc
Q 018435 105 EPSKWSHHPFGA-----HLDSQGNIFARG--S---QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (356)
Q Consensus 105 ~~~~w~~~P~~~-----~~~~~g~~~GrG--~---~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (356)
. .|.-. +.|.+|.=.-++ . --|++|.|+.+.+++++.+.+ ++.+|+.+....|-.
T Consensus 246 ~------~~i~LVGKGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~ENm 310 (483)
T PRK00913 246 K------KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACENM 310 (483)
T ss_pred C------CeEEEEcCceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 0 11111 011122111111 1 123588899999999999886 478899998888853
No 91
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=82.31 E-value=2.2 Score=42.21 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=34.5
Q ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEE-EeeccccCccccHH
Q 018435 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLS-FVPDEEIGGHDGAE 174 (356)
Q Consensus 121 ~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~-~~~~EE~g~~~G~~ 174 (356)
++.+.|+ ..||+.++.+++.|+..+.........++.++ ++..||.|+ +|+.
T Consensus 242 ~e~i~s~-rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs-~ga~ 294 (465)
T PTZ00371 242 EEFISSP-RLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGS-SSSQ 294 (465)
T ss_pred CCeEEEe-cchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCC-Ccch
Confidence 4566666 56999999999999987653200112345554 488999996 4544
No 92
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=79.87 E-value=26 Score=34.83 Aligned_cols=133 Identities=13% Similarity=-0.031 Sum_probs=74.9
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccCCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp~ 104 (356)
+.+.+.++|...|.- -..-..++++..+++...|+.++.++.. -..+.+++.=+++. ..|.++...|..+-+.
T Consensus 190 ~~~~lar~l~d~PaN--~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~-~pP~ll~lsY~g~~~~ 266 (513)
T KOG2597|consen 190 AAQNLARRLGDTPAN--RMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASC-EPPRLLELSYKGTSGA 266 (513)
T ss_pred HHHHHHHHhccCChh--hcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccC-CCCEEEEEEEcCCCCC
Confidence 344455556555552 2345788999999999999777654432 13344444444553 3466777777665433
Q ss_pred CCCCCCCCCCCee-eCCCC-eEEecCc----ccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccC
Q 018435 105 EPSKWSHHPFGAH-LDSQG-NIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168 (356)
Q Consensus 105 ~~~~w~~~P~~~~-~~~~g-~~~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g 168 (356)
.. |-.-=.++. .|.+| .|...+. .-+++|.|+.+.+++++.+.++ +-++.+++.-.|-.-
T Consensus 267 ~~--~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~~--~in~~~v~plcENm~ 332 (513)
T KOG2597|consen 267 DK--TILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLSL--PINVHAVLPLCENMP 332 (513)
T ss_pred cc--eEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcCC--CCceEEEEeeeccCC
Confidence 21 100000110 11111 1111111 1236788999999999988865 478999998888643
No 93
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=79.66 E-value=7.5 Score=37.01 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=46.9
Q ss_pred EecCCCCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEE
Q 018435 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSF 161 (356)
Q Consensus 82 ~~~g~~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 161 (356)
.++|.. ...|+|.+|+.+-.. +.|+-+|++...+.++.|++... +.+.+|+|
T Consensus 123 ~ipG~s--~~EillsthiCHPsm------------------------ANdnLSG~~v~~~La~~L~~~~~--rytYRflf 174 (386)
T PF09940_consen 123 VIPGES--DEEILLSTHICHPSM------------------------ANDNLSGPAVLTFLAKWLKQLPN--RYTYRFLF 174 (386)
T ss_dssp EE--SS--S-EEEEEEE----S-------------------------TTTTHHHHHHHHHHHHHHTTS----SSEEEEEE
T ss_pred EecCCC--CCeEEEEEeccCccc------------------------ccccccHHHHHHHHHHHHhcCCc--CceEEEEE
Confidence 357764 479999999988643 55889999999999999997753 48999999
Q ss_pred eeccccCccccHHHHhcc--ccccC-CceEEEEe
Q 018435 162 VPDEEIGGHDGAEKFADS--HVFNS-LNVGIVLD 192 (356)
Q Consensus 162 ~~~EE~g~~~G~~~~~~~--~~~~~-~~~~~~~~ 192 (356)
.|+ - -|+..++.+ ...++ +..++++.
T Consensus 175 ~Pe-T----IGsI~yLskn~~~l~~~v~~G~vLt 203 (386)
T PF09940_consen 175 VPE-T----IGSITYLSKNLDELKKNVKAGLVLT 203 (386)
T ss_dssp E-T-T----HHHHHHHHH-GGGGGG-EEEEEE--
T ss_pred ccc-c----HHHHHHHHHCHHHHhhheeeeEEEE
Confidence 993 2 366666654 23333 44566664
No 94
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=76.51 E-value=57 Score=29.29 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=67.0
Q ss_pred EEEEecCC-----CCCCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHH--HHcCC
Q 018435 79 ILLKWPGS-----NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL--KASGF 151 (356)
Q Consensus 79 v~~~~~g~-----~~~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l--~~~~~ 151 (356)
+-+.++|+ +.+.|++.+.|-+=.+..-++ -. |- ++|..|.++++-.|+|.+ +++|.
T Consensus 15 vki~ipG~~Gk~~Gg~aptlGIiGRLGgigARP~------~i----------Gl-VSDaDGAi~ala~a~KL~~M~~kGd 77 (276)
T PF06675_consen 15 VKILIPGSNGKSSGGSAPTLGIIGRLGGIGARPE------RI----------GL-VSDADGAIAALAAALKLLDMQAKGD 77 (276)
T ss_pred EEEEecCccCccCCCCCCeeEEEeeccccccccc------ce----------ee-eecCchHHHHHHHHHHHHHHHHcCC
Confidence 44566663 245699999998877755321 01 11 467788888888888854 57888
Q ss_pred CCcccEEEEEeeccc-----------cCccccHHHHhccccccCCceEEEEec
Q 018435 152 QPVRSVYLSFVPDEE-----------IGGHDGAEKFADSHVFNSLNVGIVLDE 193 (356)
Q Consensus 152 ~~~~~i~~~~~~~EE-----------~g~~~G~~~~~~~~~~~~~~~~~~~~~ 193 (356)
.++++|++.-.-+-- .++..++..+.+++..+..|..+.+|.
T Consensus 78 ~L~GDVii~ThIcp~Apt~PH~PvpFM~sPv~~~~~n~~EV~p~mdAILSiDT 130 (276)
T PF06675_consen 78 VLPGDVIITTHICPDAPTRPHDPVPFMGSPVDMATMNRHEVDPEMDAILSIDT 130 (276)
T ss_pred ccCCcEEEEEecCCCCCCCCCCCcccccCccCHHHHHHhhcCcccceEEEEec
Confidence 899999998543322 245567777777777777888888874
No 95
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=75.48 E-value=61 Score=32.33 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=69.3
Q ss_pred HHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCC-CceEEEeec----CCCceEEEEecCCCCCCCcEEEEeecccCC
Q 018435 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS-LESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (356)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g-~~~~~~~~~----~~~~nv~~~~~g~~~~~~~il~~aH~Dtvp 103 (356)
+.+.+.|+|++.|.. --.-...++. .+.+++.+ ++++.++.. -+.+.+++.=+|+. ..|.++.. +=-+
T Consensus 168 ~~v~~aRdLvN~P~n--~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~-~~Prlivl---~y~g 240 (485)
T COG0260 168 EGVNLARDLVNTPAN--ILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSA-RPPRLIVL---EYNG 240 (485)
T ss_pred HHHHHHHHHhhCCcc--cCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCC-CCCeEEEE---EcCC
Confidence 456788889998884 2244566666 56666654 777776543 25566666655654 23544422 1111
Q ss_pred CCCCCCCCCCCCe-----eeCCCCeEEecC--cccc---hHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccc
Q 018435 104 SEPSKWSHHPFGA-----HLDSQGNIFARG--SQDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (356)
Q Consensus 104 ~~~~~w~~~P~~~-----~~~~~g~~~GrG--~~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (356)
... ...|.-. +.|.+|.=.-++ ..+| .+|.|+.+.++..+.+.+. +.+|+.+....|-
T Consensus 241 ~~~---~~~~iaLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~l--~vnv~~vl~~~EN 308 (485)
T COG0260 241 KGK---AKKPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELKL--PVNVVGVLPAVEN 308 (485)
T ss_pred CCC---CCceEEEEcCceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHHHcCC--CceEEEEEeeecc
Confidence 110 0111110 011222222111 1222 4778889999999988864 6788888888775
No 96
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=66.97 E-value=16 Score=36.55 Aligned_cols=51 Identities=8% Similarity=-0.117 Sum_probs=39.3
Q ss_pred cccCCeEEEEEEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeecccccCC
Q 018435 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLSLLHT 338 (356)
Q Consensus 286 nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (356)
+.--+.+++.+++|+++....+++.++|+... ...+.++++....++|...
T Consensus 352 ~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~--~~~g~~~~~~~~~p~w~~~ 402 (485)
T PRK15026 352 TMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLG--KLAGAKTEAKGAYPGWQPD 402 (485)
T ss_pred EEeCCEEEEEEEecCCCchHHHHHHHHHHHHH--HHcCcEEEEeCCCCCCCCC
Confidence 34567899999999999999999999998653 3446777776666665544
No 97
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=63.43 E-value=9.6 Score=37.12 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=58.7
Q ss_pred CCCceEEEEecCCCC-CCCcEEEEeecccCCCCC----CCCCCCCCCeeeCCCCeEE-ecCcccchHHHHHHHHHHHHHH
Q 018435 74 KNKPLILLKWPGSNP-QLPSILLNSHTDVVPSEP----SKWSHHPFGAHLDSQGNIF-ARGSQDMKCVGMQYLEAIRRLK 147 (356)
Q Consensus 74 ~~~~nv~~~~~g~~~-~~~~il~~aH~Dtvp~~~----~~w~~~P~~~~~~~~g~~~-GrG~~D~k~~~a~~l~a~~~l~ 147 (356)
+..+|+....+..+. +...+.+-||+|-||... -+...+|-.+.+ +++++. .+|+ |+ .+++..++.+.-
T Consensus 44 dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v-~~~~l~~~~Ga-d~-i~~~~~~a~L~~-- 118 (414)
T COG2195 44 DELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDTVPDPIGPNV-NPQILKATLGA-DN-IGLAIGLAVLSP-- 118 (414)
T ss_pred hhhccccccccccCCCCeeeEEeecccccccccccccccccccccccccc-CCceeeeccCc-ch-hhhhhHHhhcCc--
Confidence 455666666655442 235678999999998532 233456777777 788888 6776 54 666655554332
Q ss_pred HcCCCCcccEEEEEeeccccCccccHH
Q 018435 148 ASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (356)
Q Consensus 148 ~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (356)
-..++...++..||++. .|+-
T Consensus 119 -----~~~P~~~~~t~~~ei~~-dGa~ 139 (414)
T COG2195 119 -----EHFPLEVLLTGDEEITT-DGAT 139 (414)
T ss_pred -----ccCCceeeeecceEEec-cCcc
Confidence 14568889999999874 4655
No 98
>PRK09929 hypothetical protein; Provisional
Probab=46.68 E-value=94 Score=23.36 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=37.2
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCChhHHHHHHHhhhcccCCC--CCcChhHHHHHHHHHHHHCCCceEEE
Q 018435 1 MRNRHRLLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQ--PNPDYTNASKFILAQAEALSLESQTL 70 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~s~s--~~~~e~~~~~~l~~~l~~~g~~~~~~ 70 (356)
||+-..+|...+.++...++++.....++.-..-..|-++.++| ..+....+.+.|.+...+.|...-++
T Consensus 1 ~~~~~~~~~~al~~lS~~A~AA~~i~~~qa~~~~~~l~kiGtVSvs~~~s~~d~~~~La~KAd~~GA~yY~I 72 (91)
T PRK09929 1 MKIISKMLLGALAFAVTNVYAAELMTKAEFEKVESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVL 72 (91)
T ss_pred ChhHHHHHHHHHHHhchhhhhhhhhCHHHhhhhhcccceeEEEEEcCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55544334434444444555554444444322222334444432 22356678889999999999865443
No 99
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=3.2e+02 Score=27.86 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCceEEEeecC------CCceEEEEecCCCC-CCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEec
Q 018435 55 FILAQAEALSLESQTLEFAK------NKPLILLKWPGSNP-QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFAR 127 (356)
Q Consensus 55 ~l~~~l~~~g~~~~~~~~~~------~~~nv~~~~~g~~~-~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~Gr 127 (356)
++...+++.|.++...+... ..-|+++.+.+-.. +...+++ +||-+.. +
T Consensus 93 ~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl-----~vP~~~~------------~------- 148 (617)
T KOG3566|consen 93 WAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVL-----VVPYGRS------------S------- 148 (617)
T ss_pred HHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEE-----EEecccC------------C-------
Confidence 46667777798776544311 24689999875432 2345665 4554431 1
Q ss_pred CcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCccccHHHHhcc
Q 018435 128 GSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 128 G~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
|. |.++++-++..++.++... -+.+||+++++-++ ..|..++++.
T Consensus 149 ~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~~----~~g~~AwLea 193 (617)
T KOG3566|consen 149 GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDGP----ALGLDAWLEA 193 (617)
T ss_pred Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCCc----cccHHHHHHH
Confidence 22 2566677777676666543 57899999999763 2478888875
No 100
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=41.23 E-value=69 Score=29.19 Aligned_cols=36 Identities=8% Similarity=0.189 Sum_probs=25.8
Q ss_pred hhcccCCCCCcChhHHHH-HHHHHHHHCCCceEEEeecC
Q 018435 37 YLQIDTSQPNPDYTNASK-FILAQAEALSLESQTLEFAK 74 (356)
Q Consensus 37 l~~i~s~s~~~~e~~~~~-~l~~~l~~~g~~~~~~~~~~ 74 (356)
=+.+... +..+.+..+ ..+..+++.|++.+.+++.|
T Consensus 30 ~I~vg~~--~~p~a~ile~~~k~~~~k~Gi~l~i~~FtD 66 (268)
T COG1464 30 TIKVGAT--PGPHAEILEVVVKPALKKKGLDLKIVEFTD 66 (268)
T ss_pred cEEEeec--CCchHHHHHHHHHHHHHhcCceEEEEEecC
Confidence 3444443 456777888 78888889999999877655
No 101
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=35.58 E-value=1.5e+02 Score=29.47 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEE----EeecC--------CCceEEEEecCCCC---CCCcEEEEee
Q 018435 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQT----LEFAK--------NKPLILLKWPGSNP---QLPSILLNSH 98 (356)
Q Consensus 34 l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~----~~~~~--------~~~nv~~~~~g~~~---~~~~il~~aH 98 (356)
.++|+++=.. ++.+..+.+++.++|++.||.--. .+... +...++|..-|.++ .....++.+|
T Consensus 9 ~~~~~~Fl~~--s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaH 86 (465)
T PTZ00371 9 AQEFLNFINK--TGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAH 86 (465)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEe
Confidence 3344444343 345688999999999999985211 11111 22356666556552 2346799999
Q ss_pred cccC
Q 018435 99 TDVV 102 (356)
Q Consensus 99 ~Dtv 102 (356)
.|.-
T Consensus 87 tDsP 90 (465)
T PTZ00371 87 TDSP 90 (465)
T ss_pred ccCC
Confidence 9987
No 102
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=35.42 E-value=43 Score=32.95 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCc-ccEEEEEeeccccCc
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPV-RSVYLSFVPDEEIGG 169 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~-~~i~~~~~~~EE~g~ 169 (356)
+++.|.+. ..||...+-+.|.|+-...+....+. ..-+++++--||+||
T Consensus 225 ~~efI~s~-rlDnl~s~~a~l~Al~~~~~~~~~~~~~~~v~~~fD~EEiGS 274 (432)
T PF02127_consen 225 DEEFISSP-RLDNLASCYAALEALIDSSNDSLEPEDGTNVVVLFDNEEIGS 274 (432)
T ss_dssp TTSEEEET-THHHHHHHHHHHHHHHHHTSSCCCCSSSEEEEEEESSGGGTS
T ss_pred chhhhhcc-CcCcHHHHHHHHHHHHhhhcccccccCceEEEEEEcccccCC
Confidence 44556665 45889888888877655443322233 555666777899885
No 103
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=33.33 E-value=1.2e+02 Score=30.62 Aligned_cols=74 Identities=12% Similarity=0.037 Sum_probs=50.9
Q ss_pred CceEEEEecCCCC-CCCcEEEEeecccCCCCCCCCCCCCCCeeeCCCCeEEecCcccchHHHHHHHHHHHHHHHcCCCCc
Q 018435 76 KPLILLKWPGSNP-QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPV 154 (356)
Q Consensus 76 ~~nv~~~~~g~~~-~~~~il~~aH~Dtvp~~~~~w~~~P~~~~~~~~g~~~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~ 154 (356)
..|+++.++.... +...+++..-+++.. |.. +..+++..+..++.+++.. -+.
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~------------------------~~~-n~~~v~l~lal~~~~~~~~-~ws 56 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD------------------------GEY-NAGGVALALALARYFRRQS-YWS 56 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC------------------------ccc-chhhHHHHHHHHHHhhhch-hhh
Confidence 4588888864332 346788776554331 111 2678899999999998775 468
Q ss_pred ccEEEEEeeccccCccccHHHHhcc
Q 018435 155 RSVYLSFVPDEEIGGHDGAEKFADS 179 (356)
Q Consensus 155 ~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (356)
+||+|+++.+|. .|+++++++
T Consensus 57 KDii~l~~~~~~----~g~~awl~~ 77 (504)
T PF04114_consen 57 KDIIFLFTDDEL----AGMQAWLEA 77 (504)
T ss_pred ccEEEEecCCcc----hHHHHHHHH
Confidence 999999986542 378888875
No 104
>PRK02813 putative aminopeptidase 2; Provisional
Probab=30.14 E-value=1.8e+02 Score=28.51 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=36.8
Q ss_pred cChhHHHHHHHHHHHHCCCceEE----EeecC--------CCceEEEEecCCCCC--CCcEEEEeecccC
Q 018435 47 PDYTNASKFILAQAEALSLESQT----LEFAK--------NKPLILLKWPGSNPQ--LPSILLNSHTDVV 102 (356)
Q Consensus 47 ~~e~~~~~~l~~~l~~~g~~~~~----~~~~~--------~~~nv~~~~~g~~~~--~~~il~~aH~Dtv 102 (356)
+.+..+.+++.++|++.||.--. .+... +...++|..-|+++. ....++.||.|..
T Consensus 19 ~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP 88 (428)
T PRK02813 19 PSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSP 88 (428)
T ss_pred CCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCC
Confidence 35688999999999999985211 11011 223567666566542 2467999999987
No 105
>TIGR00702 uncharacterized domain. This uncharacterized domain comprises the whole of a protein in Methanococcus jannaschii and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=28.09 E-value=1.7e+02 Score=28.15 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=38.0
Q ss_pred hhhcCCCCChhHHHHHHHhhhcccCCC-------C------CcChhHHHHHHHHHHHHCCCceEEEeecC--CCceEEEE
Q 018435 18 IIFSSPAKSDDSIIERFRAYLQIDTSQ-------P------NPDYTNASKFILAQAEALSLESQTLEFAK--NKPLILLK 82 (356)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~~l~~i~s~s-------~------~~~e~~~~~~l~~~l~~~g~~~~~~~~~~--~~~nv~~~ 82 (356)
+..++.+...+.++.-|.|+++-...+ + ..........+.+.+++.|+++...+... +.|.+.+.
T Consensus 156 nGlAaGnt~eEAi~~gL~EvIERDa~~i~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~G~~v~l~D~t~d~giPvv~a~ 235 (377)
T TIGR00702 156 NGLASGNTRDEAILHGLSEVIERDAWSLAEAARLPEIEVDVDDRYNSIIAHLIEKLEAAGVPIDLADLTLGGGYPVVAAV 235 (377)
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccCCHHHHHHHHHHHhCCCeEEEEECcCCCCceEEEEE
Confidence 445556666666666666666544421 0 11123556667778889999888766432 44555544
Q ss_pred e
Q 018435 83 W 83 (356)
Q Consensus 83 ~ 83 (356)
.
T Consensus 236 ~ 236 (377)
T TIGR00702 236 L 236 (377)
T ss_pred E
Confidence 4
No 106
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=26.09 E-value=89 Score=30.42 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.0
Q ss_pred ecCcccchHHHHHHHHHHHHHHHcCCCCcccEEEEEeeccccCc
Q 018435 126 ARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (356)
Q Consensus 126 GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (356)
+-+-.||+.++-+.|.|+-... ......+++++--||.||
T Consensus 236 ~a~rlDn~~~~~a~m~AL~~~~----~~~~~~v~~~fD~EEIGS 275 (437)
T COG1362 236 SAPRLDNLICCHAGMEALLAAA----NSDKTCVLALFDHEEIGS 275 (437)
T ss_pred ccCCccchHHHHHHHHHHHhcc----CCCCceEEEEechhhccc
Confidence 3345799999988888876552 224556666777899886
No 107
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=24.57 E-value=2e+02 Score=21.36 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=31.8
Q ss_pred EEEecCCCCCHHHHHHHHHHHhccCCCCceEEEEeecccccCCCccC
Q 018435 296 FDIRVPPTTDAESLERRIVEEWAPASRNMTFEVVINSLSLLHTNPKR 342 (356)
Q Consensus 296 ~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (356)
..+|.++....+++.++|++.+. -...+.+.....+.+.+..+..+
T Consensus 14 ~~i~v~~~i~f~dL~~kIrdkf~-~~~~~~iKykDEGD~iti~sq~D 59 (86)
T cd06408 14 RYIMIGPDTGFADFEDKIRDKFG-FKRRLKIKMKDDGDMITMGDQDD 59 (86)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CCCceEEEEEcCCCCccccCHHH
Confidence 45789999999999999998776 34455555555455555554433
No 108
>PRK10318 hypothetical protein; Provisional
Probab=24.50 E-value=3.1e+02 Score=21.82 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHhhhcccCCC--CCc---ChhHHHHHHHHHHH
Q 018435 8 LHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQ--PNP---DYTNASKFILAQAE 61 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~s~s--~~~---~e~~~~~~l~~~l~ 61 (356)
+.+++||..+...+.......+.++.|..+++-.... .++ .-.+++++|...++
T Consensus 6 ~l~~lL~~~~~~~~~~~~~~~~ei~~L~~~~~~s~c~FiRNG~~h~~~eA~~HLr~K~~ 64 (121)
T PRK10318 6 LLITLLFTLPAYAKLTAHEEARINAMLEGLAQKKDCTFVRNGDEHTCKEAVSHLRLKLG 64 (121)
T ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHHhcCCCEEEECCCcCCHHHHHHHHHHHHH
Confidence 4556677777666666666677788887777633321 122 23688888888777
No 109
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=24.08 E-value=4.5e+02 Score=22.31 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=20.6
Q ss_pred eEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 291 EAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 291 ~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
.+.+.+.+-++.....+.+.+.+++.+.
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~ 141 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVL 141 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHH
Confidence 5677777766666667778888887776
No 110
>PRK02256 putative aminopeptidase 1; Provisional
Probab=23.90 E-value=3.5e+02 Score=26.93 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=43.5
Q ss_pred hHHHHHHHhhhcccCCCCCcChhHHHHHHHHHHHHCCCceEEEe--ec--------CCCceEEEEecCCCC-CCCcEEEE
Q 018435 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE--FA--------KNKPLILLKWPGSNP-QLPSILLN 96 (356)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~--~~--------~~~~nv~~~~~g~~~-~~~~il~~ 96 (356)
.++.+..++++++=.. ++...-+.+++.+.|++.||.--... .. .+...++|..-|+++ .....++.
T Consensus 22 ~~~~~~~~~~~~Fl~~--sptp~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~ 99 (462)
T PRK02256 22 EEIFAFAEDYKDFLSK--CKTEREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIG 99 (462)
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEE
Confidence 3444444555555454 33567889999999999998521100 00 112356665556654 22456999
Q ss_pred eecccC
Q 018435 97 SHTDVV 102 (356)
Q Consensus 97 aH~Dtv 102 (356)
||.|.-
T Consensus 100 aHtDsP 105 (462)
T PRK02256 100 AHIDSP 105 (462)
T ss_pred EecCCC
Confidence 999987
No 111
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=23.05 E-value=1.8e+02 Score=20.11 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=26.2
Q ss_pred cccccCCeEEEEEEEecCCCCCHHHHHHHHHHHhc
Q 018435 284 VMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (356)
Q Consensus 284 ~~nvip~~~~~~~diR~~~~~~~~~~~~~i~~~~~ 318 (356)
...+-.+++++.+.+-++.....+.+.+++++.+.
T Consensus 28 ~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~ 62 (72)
T PF01883_consen 28 DISIEGGKVSVSLELPTPACPAAEPLREEIREALK 62 (72)
T ss_dssp EEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHH
Confidence 34445688888888888888888999999998877
No 112
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=23.01 E-value=1.6e+02 Score=21.42 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCCeEEecCcccchHHHHHHHHHHHHHHH
Q 018435 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKA 148 (356)
Q Consensus 120 ~~g~~~GrG~~D~k~~~a~~l~a~~~l~~ 148 (356)
.+.+|+|.|.+... -.|...|+..|.+
T Consensus 10 ~~~~l~a~G~~~~~--~~A~~~A~~~la~ 36 (92)
T PF02169_consen 10 SQQYLYAVGSGSSR--EQAKQDALANLAE 36 (92)
T ss_pred CccEEEEEEcccCh--HHHHHHHHHHHHH
Confidence 67899999998877 5666777777766
No 113
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=22.94 E-value=4e+02 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=27.5
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCcccEEEEEee
Q 018435 129 SQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (356)
Q Consensus 129 ~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (356)
+.|+-+|+|.+...++.|+... .+.+.+|+|.|
T Consensus 193 aNdn~SG~all~~lak~l~~~k--trysYRfvf~P 225 (435)
T COG4310 193 ANDNLSGLALLTFLAKALKSLK--TRYSYRFVFAP 225 (435)
T ss_pred ccCccchHHHHHHHHHHHHhcc--ceeeEEEEecc
Confidence 4577899999999999998775 47889999988
No 114
>PRK10259 hypothetical protein; Provisional
Probab=22.84 E-value=3.2e+02 Score=20.25 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=22.8
Q ss_pred HhhhcccCCCC--CcChhHHHHHHHHHHHHCCCceEE
Q 018435 35 RAYLQIDTSQP--NPDYTNASKFILAQAEALSLESQT 69 (356)
Q Consensus 35 ~~l~~i~s~s~--~~~e~~~~~~l~~~l~~~g~~~~~ 69 (356)
..|-++.++|- ......+.+.|.+..++.|...-+
T Consensus 32 ~~l~kiG~VSvsg~~s~~d~~~~La~KAd~~GA~~Yr 68 (86)
T PRK10259 32 QNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYS 68 (86)
T ss_pred cCCCcceEEEEecCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44555555431 224578888899999999986433
No 115
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=21.24 E-value=3.6e+02 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=12.0
Q ss_pred CccchhHHHHHHHHHHHhhhc
Q 018435 1 MRNRHRLLHICFVFYQLIIFS 21 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (356)
|++++.++.+++++.++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~lsgCs 21 (243)
T PRK10866 1 MTRMKYLVAAATLSLFLAGCS 21 (243)
T ss_pred CchHHHHHHHHHHHHHHhhcC
Confidence 777776555444444455564
Done!