BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018436
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 44 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 103
D + LRK + GV ++R W L GY ++ R+ K+ EY Q+
Sbjct: 40 DLDELRK-CSWPGVPREVRPITWRLLSGYLPANT--ERRKLTLQRKREEYFGFIEQYYDS 96
Query: 104 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH-LLRDILLTYSFYNFDLGY 162
E+ + T +R+ I D+ RT+ + F P V + IL ++ + GY
Sbjct: 97 RNEEHHQDT-YRQ----IHIDIPRTNPLIPLFQ---QPLVQEIFERILFIWAIRHPASGY 148
Query: 163 CQGMSDLLSPIL------FVMED-----------------ESQSFWCFVALMERLGPNFN 199
QG++DL++P +V ED E+ SFWC L++ + N+
Sbjct: 149 VQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYT 208
Query: 200 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 259
Q G+ ++ AL +LV +D +HN+F++ + F FRW+ RE T+RLW
Sbjct: 209 FAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLW 268
Query: 260 EVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 304
+ Y SE H HLYVC A L ++R +I+ E+ DF LL + L
Sbjct: 269 DT----YQSEPEGFSHFHLYVCAAFLIKWRKEILDEE-DFQGLLMLLQNL 313
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 131/312 (41%), Gaps = 52/312 (16%)
Query: 28 GSEEWTTFLDN-----EGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 82
GSE + LD G D LR R+ + G+ +R W L GY +
Sbjct: 18 GSEREASRLDKFKQLLAGPNTDLEELR-RLSWSGIPKPVRPMTWKLLSGYLPANVDRRPA 76
Query: 83 EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 142
R K+ EY + ++ + T +R+ I D+ R P
Sbjct: 77 TLQR--KQKEYFAFIEHYYDSRNDEVHQDT-YRQ----IHIDIPRMSPEALIL----QPK 125
Query: 143 V-HLLRDILLTYSFYNFDLGYCQGMSDLLSP--ILFVME--------------------- 178
V + IL ++ + GY QG++DL++P ++F+ E
Sbjct: 126 VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLC 185
Query: 179 -DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFF 237
E+ ++WC L++ + N+ Q G+ ++ L +LV +D +H + Q++ F
Sbjct: 186 NIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQF 245
Query: 238 CFRWVLIQFKREFEYEKTMRLWEVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQM 292
FRW+ RE T+RLW+ Y SE H HLYVC A L R+R +I+ E+
Sbjct: 246 AFRWMNNLLMREVPLRCTIRLWDT----YQSEPDGFSHFHLYVCAAFLVRWRKEIL-EEK 300
Query: 293 DFDTLLKFINEL 304
DF LL F+ L
Sbjct: 301 DFQELLLFLQNL 312
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 410
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 44/249 (17%)
Query: 50 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 109
++I + G+ R VW L+GY ++ E R K+ EY + + + S + +R
Sbjct: 47 RQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQR--KRKEYRDSLKH--TFSDQHSR 102
Query: 110 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDL 169
+ + I+ D+ RT+ + + N L+ IL ++ + GY QG++DL
Sbjct: 103 DIPTWHQ----IEIDIPRTNPHIPLYQFKSVQNS--LQRILYLWAIRHPASGYVQGINDL 156
Query: 170 LSPIL----------------------------FVMEDESQSFWCFVALMERLGPNFNRD 201
++P + + E+ +FWC L+E++ N+
Sbjct: 157 VTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHG 216
Query: 202 QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYF-FCFRWVLIQFKREFEYEKTMRLWE 260
Q G+ Q+ LS+LV+ +D L+N+F QN+ + + F FRW+ REF+ +R+W+
Sbjct: 217 QPGILRQVKNLSQLVKRIDADLYNHF-QNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
Query: 261 VLWTHYLSE 269
YLSE
Sbjct: 276 T----YLSE 280
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 44/249 (17%)
Query: 50 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 109
++I + G+ R VW L+GY ++ E R K+ EY + + + S + +R
Sbjct: 27 RQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQR--KRKEYRDSLKH--TFSDQHSR 82
Query: 110 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDL 169
+ + I+ D+ RT+ + + N L+ IL ++ + GY QG++DL
Sbjct: 83 DIPTWHQ----IEIDIPRTNPHIPLYQFKSVQNS--LQRILYLWAIRHPASGYVQGINDL 136
Query: 170 LSPIL----------------------------FVMEDESQSFWCFVALMERLGPNFNRD 201
++P + + E+ +FWC L+E++ N+
Sbjct: 137 VTPFFETFLTEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQITDNYIHG 196
Query: 202 QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYF-FCFRWVLIQFKREFEYEKTMRLWE 260
Q G+ Q+ LS+LV+ +D L+N+F QN+ + + F FRW REF+ +R W+
Sbjct: 197 QPGILRQVKNLSQLVKRIDADLYNHF-QNEHVEFIQFAFRWXNCLLXREFQXGTVIRXWD 255
Query: 261 VLWTHYLSE 269
YLSE
Sbjct: 256 T----YLSE 260
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 101/248 (40%), Gaps = 32/248 (12%)
Query: 55 GGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKF 114
GV LR EVW L G +D+ Y I TK
Sbjct: 32 SGVPEALRAEVWQLLAG--CHDNQAXLDRYRILI-----------------------TKD 66
Query: 115 RERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPIL 174
++ +I +D+ RT + +F L I YS Y+ D+GYCQG S L+ +L
Sbjct: 67 SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQS-FLAAVL 125
Query: 175 FVMEDESQSFWCFVALMERLGPN--FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDC 232
+ E Q+F V + G + + +H + + L +L + LH++F +
Sbjct: 126 LLHXPEEQAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNL 185
Query: 233 LNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQM 292
+ + +W L F +F + ++L L+ H V +A+LK + ++ Q
Sbjct: 186 EAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFH--VALALLKTSKEDLL--QA 241
Query: 293 DFDTLLKF 300
DF+ LKF
Sbjct: 242 DFEGALKF 249
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 111/258 (43%), Gaps = 10/258 (3%)
Query: 50 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 109
+ +++ G+ +R +VW+ +G + T+ + K + ++ + E A
Sbjct: 42 RDLWWQGIPPSVRGKVWSLAIGN-ELNITHELFDICLARAKERWRSLSTGGSEVENEDAG 100
Query: 110 RFTKFRERK-GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSD 168
RE LI D+ RT ++ F P +L IL Y+ Y D+GY QGMS
Sbjct: 101 FSAADREASLELIKLDISRTFPNLCIFQ-QGGPYHDMLHSILGAYTCYRPDVGYVQGMS- 158
Query: 169 LLSPILFVMEDESQSFWCFVALMER-LGPNFNRDQNGMHSQLFALSKLVELLDNP-LHNY 226
++ +L + D + +F F L+ + F R +G+ FA ++ + P L +
Sbjct: 159 FIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAH 218
Query: 227 FKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNK 286
FK+N+ + W+ + + + R+W+V E + ILK + +
Sbjct: 219 FKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD--GEEFLFRTALGILKLFEDI 276
Query: 287 IMGEQMDFDTLLKFINEL 304
+ +MDF + +F+ L
Sbjct: 277 LT--KMDFIHMAQFLTRL 292
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
Domain
Length = 301
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 106/249 (42%), Gaps = 23/249 (9%)
Query: 56 GVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFR 115
GV R E+W FL Y K+Q IS ++ + +
Sbjct: 49 GVPKSRRGEIWQFLALQYRLRHRLPN---------------KQQPPDISYKELLKQLTAQ 93
Query: 116 ERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILF 175
+ L+D + RT + +F P L ++L YS + ++GYCQG+S ++ +L
Sbjct: 94 QHAILVD--LGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGIS-FVAGVLL 150
Query: 176 VMEDESQSFWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL 233
+ E Q+F LM LG + D + Q++ LS+L+ L+N+ ++N+
Sbjct: 151 LHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEIS 210
Query: 234 NYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMD 293
+ W L F +F R++++++ + V +++L IM E
Sbjct: 211 PSLYAAPWFLTLFASQFSLGFVARVFDIIFLQ--GTEVIFKVALSLLSSQETLIM-ECES 267
Query: 294 FDTLLKFIN 302
F+ +++F+
Sbjct: 268 FENIVEFLK 276
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain
pdb|3QYE|B Chain B, Crystal Structure Of Human Tbc1d1 Rabgap Domain
Length = 331
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 116/276 (42%), Gaps = 27/276 (9%)
Query: 32 WTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCI 88
W L GR D + + G H R E+W FL + + ++ + +
Sbjct: 33 WEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHH-RGEIWKFLAEQFHLKHQFPSKQQPKDV 91
Query: 89 KKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRD 148
Y+ + +Q S ++ I D+ RT + +F L +
Sbjct: 92 P---YKELLKQLTS--------------QQHAILIDLGRTFPTHPYFSAQLGAGQLSLYN 134
Query: 149 ILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG--PNFNRDQNGMH 206
IL YS + ++GYCQG+S ++ IL + E ++F LM +G + D +
Sbjct: 135 ILKAYSLLDQEVGYCQGLS-FVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQ 193
Query: 207 SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 266
Q++ LS+L+ L+N+ ++++ + W L F +F R++++++
Sbjct: 194 IQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ- 252
Query: 267 LSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN 302
+ V +++L ++ I+ + + +T++ FI
Sbjct: 253 -GTEVIFKVALSLLGSHKPLILQHE-NLETIVDFIK 286
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 85 LRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH 144
+R K+ Y++IK ++ S + F + E ++ D + +RS F D +
Sbjct: 244 VRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDD-VVSSDFIGDNRSSIF---DAKAGIQ 299
Query: 145 LLRDILLTYSFYNFDLGYCQGMSDLL 170
L + + S+Y+ + GY Q + DLL
Sbjct: 300 LSKTFVKVVSWYDNEFGYSQRVIDLL 325
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 85 LRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH 144
+R K+ Y++IK ++ S + F + E ++ D + +RS F D +
Sbjct: 243 VRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDD-VVSSDFIGDNRSSIF---DAKAGIQ 298
Query: 145 LLRDILLTYSFYNFDLGYCQGMSDLL 170
L + + S+Y+ + GY Q + DLL
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLL 324
>pdb|4HLQ|A Chain A, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|C Chain C, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|E Chain E, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|G Chain G, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|I Chain I, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 305
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 50/279 (17%)
Query: 44 DSNALRK-RIFYGGV-DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYE---NIKR 98
D ALR+ I GG+ ++RR+VW LL A D + LR + K + +++R
Sbjct: 46 DVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRR 105
Query: 99 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNF 158
+ P +R+GL ++ + + NP +H
Sbjct: 106 SLRRFPPGMPE-----EQREGLQEELIDIILLILE-----RNPQLH-------------- 141
Query: 159 DLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRD--QNGMHSQLFALSKLV 216
Y QG D++ L V+ + + +L+E+L + RD M + L+ L+
Sbjct: 142 ---YYQGYHDIVVTFLLVVGERLAT-----SLVEKLSTHHLRDFMDPTMDNTKHILNYLM 193
Query: 217 ELLD--NPLHNYFKQNDCLNYFFCFRWVLIQFKREF-EYEKTMRLWE-VLWTHYLSEHLH 272
++D NP + F Q+ + F W++ F ++ +RL++ L H L +
Sbjct: 194 PIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL---MP 250
Query: 273 LYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLD 311
+Y A++ YR + E +D D + ++ L +I D
Sbjct: 251 IYFA-AVIVLYREQ---EVLDCDCDMASVHHLLSQIPQD 285
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
pdb|2GV9|B Chain B, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna
Polymerase
Length = 1193
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 158 FDLGYCQ---------GMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQ 208
F LG C L +P++ + E + F+ L+++ GP F N ++
Sbjct: 370 FSLGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFD 429
Query: 209 -LFALSKLVELLDNPLHNYFKQN 230
F L+KL ++ PL Y + N
Sbjct: 430 WPFLLAKLTDIYKVPLDGYGRMN 452
>pdb|4HL4|A Chain A, Crystal Structure Of The Human Tbc1d20 Rabgap Domain
Length = 292
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 50/279 (17%)
Query: 44 DSNALRK-RIFYGGV-DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYE---NIKR 98
D ALR+ I GG+ ++RR+VW LL A D + LR + K + +++R
Sbjct: 33 DVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRR 92
Query: 99 QWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNF 158
+ P +R+GL ++ + + NP +H
Sbjct: 93 SLRRFPPGMPE-----EQREGLQEELIDIILLILE-----RNPQLH-------------- 128
Query: 159 DLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRD--QNGMHSQLFALSKLV 216
Y QG D++ L V+ + + +L+E+L + RD M + L+ L+
Sbjct: 129 ---YYQGYHDIVVTFLLVVGERLAT-----SLVEKLSTHHLRDFMDPTMDNTKHILNYLM 180
Query: 217 ELLD--NPLHNYFKQNDCLNYFFCFRWVLIQFKREF-EYEKTMRLWE-VLWTHYLSEHLH 272
++D NP + F Q+ + F W++ F ++ +RL++ L H L +
Sbjct: 181 PIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL---MP 237
Query: 273 LYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLD 311
+Y A++ YR + E +D D + ++ L +I D
Sbjct: 238 IYFA-AVIVLYREQ---EVLDCDCDMASVHHLLSQIPQD 272
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 148 DILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNG-MH 206
D+L+TY+ NFD Y + S++L + D S+ ++R+G F + G +H
Sbjct: 204 DVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEP------KIQRMGDRFAVEVKGRIH 257
Query: 207 SQLFAL 212
L+ +
Sbjct: 258 FDLYPV 263
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 148 DILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNG-MH 206
D+L+TY+ NFD Y + S++L + D S+ ++R+G F + G +H
Sbjct: 204 DVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEP------KIQRMGDRFAVEVKGRIH 257
Query: 207 SQLFAL 212
L+ +
Sbjct: 258 FDLYPV 263
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1
In Complex With H1.5k27me2 At 1.66 Angstrom
pdb|2RHX|A Chain A, Crystal Structure Of The 3-mbt Repeats From Human L3mbtl1
Bound To Dimethyl-lysine
Length = 345
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 20 GKPRQPPLGSEEWTTFLDNEGRVM 43
G P QPPLG E ++ +D+ GR++
Sbjct: 320 GHPLQPPLGPREPSSAVDSSGRIV 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,643,983
Number of Sequences: 62578
Number of extensions: 499300
Number of successful extensions: 1619
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 23
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)