Query 018436
Match_columns 356
No_of_seqs 208 out of 1587
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 1.7E-46 3.6E-51 326.9 23.7 289 30-324 10-363 (370)
2 KOG2058 Ypt/Rab GTPase activat 100.0 1.4E-46 3.1E-51 350.0 21.5 265 29-321 123-397 (436)
3 KOG2223 Uncharacterized conser 100.0 8.2E-42 1.8E-46 308.4 21.0 277 30-321 275-555 (586)
4 KOG1092 Ypt/Rab-specific GTPas 100.0 1.4E-41 3E-46 306.9 17.2 277 40-327 173-479 (484)
5 smart00164 TBC Domain in Tre-2 100.0 7.2E-41 1.6E-45 291.3 17.9 196 53-267 1-198 (199)
6 KOG2222 Uncharacterized conser 100.0 2.8E-36 6E-41 275.5 20.0 280 40-342 154-456 (848)
7 COG5210 GTPase-activating prot 100.0 3.4E-36 7.4E-41 294.9 21.9 244 28-291 182-430 (496)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 4.4E-36 9.6E-41 263.9 18.2 212 59-288 1-214 (214)
9 KOG2224 Uncharacterized conser 100.0 8.3E-35 1.8E-39 263.2 21.6 304 22-327 400-735 (781)
10 KOG1093 Predicted protein kina 100.0 2E-34 4.3E-39 269.0 16.4 253 43-329 343-598 (725)
11 KOG4347 GTPase-activating prot 100.0 2.6E-31 5.7E-36 252.2 15.7 265 30-322 174-458 (671)
12 KOG4436 Predicted GTPase activ 100.0 2.2E-30 4.7E-35 249.7 19.1 256 30-307 550-809 (948)
13 KOG1091 Ypt/Rab-specific GTPas 100.0 3.9E-30 8.4E-35 240.3 19.9 261 60-326 28-367 (625)
14 KOG2197 Ypt/Rab-specific GTPas 100.0 4.7E-31 1E-35 253.8 11.9 306 21-327 142-447 (488)
15 KOG2595 Predicted GTPase activ 100.0 5.1E-28 1.1E-32 213.7 14.0 257 41-327 44-306 (395)
16 KOG1102 Rab6 GTPase activator 99.9 1.3E-26 2.8E-31 219.3 13.5 243 43-313 133-377 (397)
17 KOG2221 PDZ-domain interacting 99.9 1.6E-24 3.5E-29 180.4 1.2 191 28-242 74-267 (267)
18 KOG3636 Uncharacterized conser 99.8 1.8E-17 4E-22 151.6 16.3 238 56-330 36-280 (669)
19 KOG4436 Predicted GTPase activ 99.7 1.9E-16 4.2E-21 153.9 11.5 254 43-320 172-439 (948)
20 KOG2801 Probable Rab-GAPs [Int 99.4 8.3E-12 1.8E-16 109.5 15.9 254 44-322 31-294 (559)
21 KOG1648 Uncharacterized conser 99.0 1.7E-11 3.6E-16 114.1 -3.4 269 23-317 527-798 (813)
22 PF14961 BROMI: Broad-minded p 97.6 0.0015 3.2E-08 68.4 14.8 174 144-321 1084-1277(1296)
23 KOG2197 Ypt/Rab-specific GTPas 96.7 0.0031 6.8E-08 61.8 5.8 79 22-100 43-121 (488)
24 KOG2224 Uncharacterized conser 70.0 1.8 4E-05 41.0 0.7 50 144-193 546-599 (781)
25 PF10815 ComZ: ComZ; InterPro 59.8 20 0.00043 23.5 3.7 41 211-251 5-45 (56)
26 PF08109 Antimicrobial14: Lact 39.7 22 0.00048 19.6 1.4 16 160-175 3-18 (31)
27 KOG1102 Rab6 GTPase activator 35.9 5.8 0.00013 38.2 -2.2 116 120-267 2-117 (397)
28 PF09691 PulS_OutS: Bacterial 31.0 86 0.0019 24.2 3.9 52 46-98 34-87 (109)
29 PF14425 Imm3: Immunity protei 27.0 3.1E+02 0.0067 21.5 7.5 75 252-328 28-110 (117)
30 TIGR02433 lysidine_TilS_C tRNA 24.3 12 0.00026 23.6 -1.5 25 45-69 20-44 (47)
31 PF09597 IGR: IGR protein moti 22.6 95 0.002 20.9 2.5 28 30-66 21-48 (57)
32 PF12763 EF-hand_4: Cytoskelet 21.7 79 0.0017 24.1 2.3 47 23-69 3-52 (104)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=326.88 Aligned_cols=289 Identities=28% Similarity=0.495 Sum_probs=248.8
Q ss_pred HHHHhccccCCCCCCHHHHHHHHhcCCCC--CchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCC---
Q 018436 30 EEWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS--- 104 (356)
Q Consensus 30 ~~W~~~l~~~~~~~~~~~l~~~~~~~GiP--~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~--- 104 (356)
+..+.++......++.+++|+ ++..|+| ..+|+.+|+.+||++|.+.+.+ ...+.+.+..|....++....+
T Consensus 10 ~~~edvl~~~~~~id~kelr~-~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~ 86 (370)
T KOG4567|consen 10 KSIEDVLNPADDTIDLKELRK-LCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKK 86 (370)
T ss_pred hhHHHhhccccchhhHHHHHH-HhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCcccc
Confidence 456667766666699999998 5589999 5899999999999999887654 7888999999998887532211
Q ss_pred ---------------------hHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCC-----------------------
Q 018436 105 ---------------------PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN----------------------- 140 (356)
Q Consensus 105 ---------------------~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~----------------------- 140 (356)
...+..+.+.++...||++|+.||+|+..+|+....
T Consensus 87 ~~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~ 166 (370)
T KOG4567|consen 87 DNSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNR 166 (370)
T ss_pred ccccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcc
Confidence 123444556778899999999999999998875321
Q ss_pred --ccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh----------ccchhHHHHHHHHHhcCCCCCC----Cchh
Q 018436 141 --PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------DESQSFWCFVALMERLGPNFNR----DQNG 204 (356)
Q Consensus 141 --~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~----------~E~~af~~~~~l~~~~~~~f~~----~~~~ 204 (356)
.......|||..||..||.+||+||||+|+||+++++. .|+|||+||+.||..++++|.. +..|
T Consensus 167 ~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~G 246 (370)
T KOG4567|consen 167 LGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGG 246 (370)
T ss_pred cchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 11234579999999999999999999999999999984 2899999999999999988754 3468
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHHHHHhH
Q 018436 205 MHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYR 284 (356)
Q Consensus 205 ~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lail~~~~ 284 (356)
++..+..+..+++++|-+||+||++.++.|..|+++|+.+|++++||++++.||||.+|+......+++++|.|||...|
T Consensus 247 I~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~R 326 (370)
T KOG4567|consen 247 IHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVR 326 (370)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999988778999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHh
Q 018436 285 NKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA 324 (356)
Q Consensus 285 ~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~ 324 (356)
+.|++. |+...+++||++| ..|+..++..|.+|+...
T Consensus 327 e~il~~--DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 327 ERILEG--DFTVNMKLLQNYP-TTDISKMLAVADSLRDKK 363 (370)
T ss_pred HHHHhc--chHHHHHHHhcCC-CCCHHHHHHHHHHHHhcc
Confidence 999965 9999999999998 799999999999998643
No 2
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-46 Score=350.02 Aligned_cols=265 Identities=27% Similarity=0.408 Sum_probs=223.3
Q ss_pred HHHHHhccccC-------CCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhh
Q 018436 29 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 101 (356)
Q Consensus 29 ~~~W~~~l~~~-------~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~ 101 (356)
+.+|+..+..+ .-....+++++ ++++|||+++|+.||..+.|.... ...+..|+.+...-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~-liRkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKR-LIRKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHH-HHHcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCC
Confidence 46677766553 12244678887 569999999999999999984111 111677887776422
Q ss_pred cCChHHHHhhhHHHHhhchhhhcccccCCCC-cccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhcc
Q 018436 102 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 180 (356)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E 180 (356)
.... ...++|+.|+.||||++ +.|..++..++..|+|||.||+.+||++|||||||++||++|+++++|
T Consensus 191 ~~~~----------~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E 260 (436)
T KOG2058|consen 191 EKKS----------PVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE 260 (436)
T ss_pred Cccc----------hHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence 2110 34579999999999999 789888887789999999999999999999999999999999999889
Q ss_pred chhHHHHHHHHHhcCCC-CCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHH
Q 018436 181 SQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 259 (356)
Q Consensus 181 ~~af~~~~~l~~~~~~~-f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riw 259 (356)
++|||||+.+++++.+. |.+++.|.+....+|+.+++..+|+|+.||..++++..+++++||+|+|+..+|.+.++|||
T Consensus 261 E~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIw 340 (436)
T KOG2058|consen 261 EDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIW 340 (436)
T ss_pred HHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHH
Confidence 99999999999998874 67788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Q 018436 260 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG-RIDLDAILRDAEALC 321 (356)
Q Consensus 260 D~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~-~~d~~~ll~~A~~l~ 321 (356)
|++|.+| .++++++|+|+++..+++|+++. +..++++++..+.. .++.+ +.|....
T Consensus 341 D~~f~eG--skvlfr~Alai~k~~ee~il~~~-~~~~i~~~~~~~~~~~~~~~---~~~f~~~ 397 (436)
T KOG2058|consen 341 DCLFYEG--SKVLFRVALAILKKHEEEILKED-SSKEILRVLPDLTKRSIDPD---QDAFGLA 397 (436)
T ss_pred HHHHhcc--cHHHHHHHHHHHHHhHHHHhcCC-CHHHHHHHHHHHHHHhhhhh---hhhhhcc
Confidence 9999887 58999999999999999999987 89999999987653 23343 4444443
No 3
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.2e-42 Score=308.45 Aligned_cols=277 Identities=22% Similarity=0.406 Sum_probs=235.3
Q ss_pred HHHHh-ccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHH-HHHHHHHhhcCChHH
Q 018436 30 EEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSE-YENIKRQWQSISPEQ 107 (356)
Q Consensus 30 ~~W~~-~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~-Y~~l~~~~~~~~~~~ 107 (356)
..|.+ ++.+|....+..+.|. ++|.|||+..|+.||....|. ..+.+.+-......+..+. ...+.++...
T Consensus 275 ~vW~~eILpnWe~m~~SrR~re-lWwQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~~----- 347 (586)
T KOG2223|consen 275 NVWENEILPNWEDMLKSRRVRE-LWWQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMSN----- 347 (586)
T ss_pred HHHHHHhccchHHHHhhHHHHH-HHHccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence 35874 8888888888889997 789999999999999999997 4566665555444444443 3333333221
Q ss_pred HHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHH
Q 018436 108 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 187 (356)
Q Consensus 108 ~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~ 187 (356)
.-........+|..|+.||||+..+|+.. ++..+.|..||.||++++|++||+|||.+|+|+|++.+ ++.+||.+|
T Consensus 348 --sa~~re~sv~~i~LDisrTfpsl~iFqk~-GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiaf 423 (586)
T KOG2223|consen 348 --SAADREASVELIKLDISRTFPSLSIFQKG-GPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAF 423 (586)
T ss_pred --chhhhhcchhheeechhccCcceeeeccC-CchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHH
Confidence 11123345679999999999999999965 57889999999999999999999999999999999999 699999999
Q ss_pred HHHHHhcC--CCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhc
Q 018436 188 VALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 265 (356)
Q Consensus 188 ~~l~~~~~--~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~ 265 (356)
.+|+++-. ..|..+.+.+..++..|+..+++..|+|+.||.++++.|.+|+++|+.++|+..+|++..+||||+|+-+
T Consensus 424 ANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rd 503 (586)
T KOG2223|consen 424 ANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRD 503 (586)
T ss_pred HHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeec
Confidence 99999744 3578888999999999999999999999999999999999999999999999999999999999999866
Q ss_pred ccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 018436 266 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALC 321 (356)
Q Consensus 266 ~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~ 321 (356)
| +.|+++.+++|++.+++.|+ .||+..+.+||..+|.++..++++.....+.
T Consensus 504 g--eeFlfr~~lgIlklyepkLl--~mDf~~~~qfLtklp~dL~~eelF~~i~~~~ 555 (586)
T KOG2223|consen 504 G--EEFLFRTALGILKLYEPKLL--VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQ 555 (586)
T ss_pred c--hHHHHHHHHHHHHHccchHh--hhhHHHHHHHHHhCcccCCHHHHHHHHHHHh
Confidence 5 68999999999999999999 6699999999999999998888876554443
No 4
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-41 Score=306.91 Aligned_cols=277 Identities=27% Similarity=0.511 Sum_probs=244.2
Q ss_pred CCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhc
Q 018436 40 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 119 (356)
Q Consensus 40 ~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (356)
...++.++||+ +++.|||...|+.+|+.++|+.|.++.. +......++.+|..++.++...... .....+..+
T Consensus 173 ~~~id~~~Lr~-l~w~Gvp~~~Rp~~Wkll~gylp~n~~r--r~~~l~~Kr~eY~~~v~~~~~~~~~----~~~~~d~~r 245 (484)
T KOG1092|consen 173 SPIIDLEKLRK-LCWNGVPSKMRPIVWKLLSGYLPPNSDR--REGTLQRKRKEYVDSVVQYFDSLTN----GDEDQDTWR 245 (484)
T ss_pred cccccHHHHHH-HccCCCCccccCccceeeecccCcchhh--hhhhHHHHHHHHHHHHHHHhccCCC----ccccCcccc
Confidence 34578889998 6799999999999999999999887654 4667788889999999887665432 112234568
Q ss_pred hhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh---------------------
Q 018436 120 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------------------- 178 (356)
Q Consensus 120 ~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~--------------------- 178 (356)
||..|++|+.|..+.|..+.. ++.+.|||+.++.++|..||+||.++++.+++.++.
T Consensus 246 QI~id~prm~p~~~l~q~~~v--q~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E 323 (484)
T KOG1092|consen 246 QIPIDIPRMNPHIPLFQQKIV--QEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAE 323 (484)
T ss_pred ccccCCCCCCccccchhhHHH--HHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHH
Confidence 999999999999999987654 789999999999999999999999999999987762
Q ss_pred ----ccchhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHH
Q 018436 179 ----DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEK 254 (356)
Q Consensus 179 ----~E~~af~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~ 254 (356)
-|++||||+.+|+..+.++|...++|++.....++.+++..|+.|++||++.|++-.+|+++|+-+|+.+++|+..
T Consensus 324 ~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~ 403 (484)
T KOG1092|consen 324 NAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRC 403 (484)
T ss_pred HHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchh
Confidence 1899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc-hhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCC-C---CCHHHHHHHHHHHHHHhCCC
Q 018436 255 TMRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG-R---IDLDAILRDAEALCICAGEN 327 (356)
Q Consensus 255 ~~riwD~~l~~~~~-~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~-~---~d~~~ll~~A~~l~~~~~~~ 327 (356)
+.|+||.+++++.| ..|++|+|+|+|...+++|+ ++|+.+++.|||++|. + -+++-|+..|..+...+.+.
T Consensus 404 ~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~da 479 (484)
T KOG1092|consen 404 TIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSDA 479 (484)
T ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHccc
Confidence 99999999998655 47999999999999999999 4499999999999994 2 37888999999987776654
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=7.2e-41 Score=291.31 Aligned_cols=196 Identities=35% Similarity=0.649 Sum_probs=173.1
Q ss_pred hcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhchhhhcccccCCCC
Q 018436 53 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSV 132 (356)
Q Consensus 53 ~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~ 132 (356)
+++|||+++|+.+|+.++|+.+...+ .....|.+++++...... ...++|++||.||+|++
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~----------~~~~~I~~Dv~Rt~~~~ 61 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDK----------SIVHQIEKDLRRTFPEH 61 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCCh----------hhHHHHhcccCCCCCCc
Confidence 37899999999999999999654322 136788888876544322 12459999999999999
Q ss_pred cccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHhcCCC-CCCCchhHHHHHHH
Q 018436 133 TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFA 211 (356)
Q Consensus 133 ~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~~~~~-f~~~~~~~~~~~~~ 211 (356)
+.|+.+...+++.|+|||.+|+.++|++||||||++||++++.++.+|++|||+|.++|++..+. |..+..++...+..
T Consensus 62 ~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 141 (199)
T smart00164 62 SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQ 141 (199)
T ss_pred hhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHH
Confidence 99998776789999999999999999999999999999999999978999999999999987765 55666789999999
Q ss_pred HHHHHHhhCHHHHHHHHh-CCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhccc
Q 018436 212 LSKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL 267 (356)
Q Consensus 212 ~~~ll~~~~p~L~~hl~~-~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~ 267 (356)
++.++++++|+||+||++ .|+++..|+.+|++|+|++++|++.+.||||.++.+|.
T Consensus 142 ~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 142 LDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999996 99999999999999999999999999999999999873
No 6
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=275.50 Aligned_cols=280 Identities=21% Similarity=0.403 Sum_probs=232.9
Q ss_pred CCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhc
Q 018436 40 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 119 (356)
Q Consensus 40 ~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (356)
+.....++++..+..+|||+.+|+.+|+.|.|..... ......|..++++...... .+-.
T Consensus 154 ~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kk----------k~ae~sy~~ilk~~andk~----------~~~~ 213 (848)
T KOG2222|consen 154 GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKK----------KDAETSYEDILKACANDKL----------MIGK 213 (848)
T ss_pred ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhh----------ccccccHHHHHHHhccccc----------chhH
Confidence 3446678899877778899999999999999985432 3445668877765332211 1235
Q ss_pred hhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHhcCC-C-
Q 018436 120 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP-N- 197 (356)
Q Consensus 120 ~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~~~~-~- 197 (356)
||++|+-|+.|++..|.++++.+...|+|||...|+..|++||||||.-|++.+|++++ |+.||||+..+++.+.| +
T Consensus 214 qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaiiedilp~nf 292 (848)
T KOG2222|consen 214 QIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAIIEDILPANF 292 (848)
T ss_pred HHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999999999999995 99999999999998776 4
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHH
Q 018436 198 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCV 277 (356)
Q Consensus 198 f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~l 277 (356)
|....-|++..-.+...++..+.|.|-+.|+..++..++.+..||+|+|++.+.....+||||.||.+| ...++.+.+
T Consensus 293 ysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g--~i~ifql~i 370 (848)
T KOG2222|consen 293 YSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEG--GINIFQLII 370 (848)
T ss_pred hhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecC--cchhHHHHH
Confidence 455667999999999999999999999999999999999999999999999999999999999999877 356688999
Q ss_pred HHHHHhHHHHhcC---CCCHHHHHHHHhccCCC-CCHHHHHHHHHHH-----------------HHHhCCCCCCCCCCCC
Q 018436 278 AILKRYRNKIMGE---QMDFDTLLKFINELSGR-IDLDAILRDAEAL-----------------CICAGENGAASIPPGT 336 (356)
Q Consensus 278 ail~~~~~~ll~~---~~d~~~i~~~l~~~~~~-~d~~~ll~~A~~l-----------------~~~~~~~~~~~~~~~~ 336 (356)
+||++.+..|... .-+..+|...+..+|.. .|++.+++.|-+. ...+.+.+-...+|++
T Consensus 371 ~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~lmadqg~~i~n~~a 450 (848)
T KOG2222|consen 371 GILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVLMADQGHIIGNPAA 450 (848)
T ss_pred HHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhhhhcCCcccCCccc
Confidence 9999999887643 12678899999999864 4899998887654 2224444444556777
Q ss_pred CCCCCC
Q 018436 337 PPSLPI 342 (356)
Q Consensus 337 ~~~~~~ 342 (356)
.|.+|+
T Consensus 451 ~~nlpk 456 (848)
T KOG2222|consen 451 APNLPK 456 (848)
T ss_pred CCCCcH
Confidence 777776
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=294.88 Aligned_cols=244 Identities=32% Similarity=0.557 Sum_probs=205.6
Q ss_pred CHHHHHhccccCCC---CCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCC
Q 018436 28 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 104 (356)
Q Consensus 28 ~~~~W~~~l~~~~~---~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~ 104 (356)
....|...+..... .....+++.. .+.|||+.+|+.+|..++|..+.. ......|..+.+......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~gip~~~r~~vw~~~~~~~~~~----------~~~~~~y~~~~~~~~~~~ 250 (496)
T COG5210 182 ADKLWISYLDPNPLSFLPVQLSKLREL-IRKGIPNELRGDVWEFLLGIGFDL----------DKNPGLYERLLNLHREAK 250 (496)
T ss_pred HHHHHHHHHhcccchhhhhhHHHHHHH-HHhcCChHhhhhhHHHHhccchhh----------ccCchHHHHHHHHHHhcC
Confidence 35567776665444 3556778874 589999999999999999996543 334566666665322211
Q ss_pred hHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhH
Q 018436 105 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 184 (356)
Q Consensus 105 ~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af 184 (356)
... ..+.++|++|+.||+|.+..|+.+.+.....|+|||.+|+.++|++||||||++++++||.++.+|+.||
T Consensus 251 ~~~-------~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF 323 (496)
T COG5210 251 IPT-------QEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAF 323 (496)
T ss_pred CCc-------HHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHH
Confidence 110 0345799999999999999999877765556999999999999999999999999999999997799999
Q ss_pred HHHHHHHHh--cCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHH
Q 018436 185 WCFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 262 (356)
Q Consensus 185 ~~~~~l~~~--~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~ 262 (356)
||+++|+.. +...|..++.|+...+..+..+++..+|+||+||...|+....|+++||+++|.+.+|++.+.||||.+
T Consensus 324 ~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~l 403 (496)
T COG5210 324 WCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCL 403 (496)
T ss_pred HHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999993 344688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccchhHHHHHHHHHHHHhHHHHhcCC
Q 018436 263 WTHYLSEHLHLYVCVAILKRYRNKIMGEQ 291 (356)
Q Consensus 263 l~~~~~~~~l~~~~lail~~~~~~ll~~~ 291 (356)
|.+|. .+++.+++|++...+..++...
T Consensus 404 f~eg~--~~l~~~~~~~l~~~~~~l~~~~ 430 (496)
T COG5210 404 FLEGS--SMLFQLALAILKLLRDKLLKLD 430 (496)
T ss_pred HHhcc--HHHHHHHHHHHHhhhhhhhccC
Confidence 99884 7889999999999999999764
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=4.4e-36 Score=263.91 Aligned_cols=212 Identities=33% Similarity=0.615 Sum_probs=165.4
Q ss_pred CchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhchhhhcccccCCCCcccCCC
Q 018436 59 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 138 (356)
Q Consensus 59 ~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~ 138 (356)
+++|+.+|+.++|..+ .. ...+.....+................+..++|.+|+.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 4689999999999865 00 01111111111111111111112223456799999999999554443
Q ss_pred CCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHH
Q 018436 139 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 217 (356)
Q Consensus 139 ~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~-~~~~~~f~~~~~~~~~~~~~~~~ll~ 217 (356)
...+++.|.+||.+|+.++|++||+|||++|+++++.++.+|++|||+|.+++ ......|..+.+++...+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 44678999999999999999999999999999999987778999999999999 45556677877899999999999999
Q ss_pred hhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhH-HHHHHHHHHHHhHHHHh
Q 018436 218 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL-HLYVCVAILKRYRNKIM 288 (356)
Q Consensus 218 ~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~-l~~~~lail~~~~~~ll 288 (356)
+++|+|++||++.|+++..|+.+|+.|+|++.+|.+.+.|||| ++.+|. ++ ++++++|+++..|++||
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~--~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGY--KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCT--THHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCC--CcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 666664 44 89999999999999986
No 9
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=263.17 Aligned_cols=304 Identities=38% Similarity=0.741 Sum_probs=256.0
Q ss_pred CCCCCCCHHHHHh-ccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHh
Q 018436 22 PRQPPLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 100 (356)
Q Consensus 22 ~~~~~l~~~~W~~-~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~ 100 (356)
...+++....|.. .+++-+..-+.-+||+.+..+||..++|+.||++||..+...++.++|..+....+++|+.+.++-
T Consensus 400 ~~~kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkr 479 (781)
T KOG2224|consen 400 GDVKKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKR 479 (781)
T ss_pred chhhhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788886 666666677777899988889999999999999999999999999999999999999999988753
Q ss_pred h-cCChHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhc
Q 018436 101 Q-SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED 179 (356)
Q Consensus 101 ~-~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~ 179 (356)
. ++++.+.. .-++...-.+++||.||..++++|..+++++.++++|||..||.|||.+||.|||+++.++.|.-..+
T Consensus 480 lysmspeeh~--~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqn 557 (781)
T KOG2224|consen 480 LYSMSPEEHI--AFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQN 557 (781)
T ss_pred hhcCCHHHHH--HHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhcc
Confidence 3 55554432 23445556789999999999999999999999999999999999999999999999988888887777
Q ss_pred cchhHHHHHHHHHhcCC--------------------------CC--CCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCC
Q 018436 180 ESQSFWCFVALMERLGP--------------------------NF--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND 231 (356)
Q Consensus 180 E~~af~~~~~l~~~~~~--------------------------~f--~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~ 231 (356)
|.++||||+.+|+.+.+ .| .+....+...+.-+..+++...|..|+||.+.|
T Consensus 558 esetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ 637 (781)
T KOG2224|consen 558 ESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHG 637 (781)
T ss_pred ccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhC
Confidence 77788887777763211 01 122344555666789999999999999999997
Q ss_pred CCc--chhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCC
Q 018436 232 CLN--YFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRID 309 (356)
Q Consensus 232 i~~--~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d 309 (356)
-+. .+||-+|++.+|.++||-..++|||...+++.....|.+++|+||+-.+.+..++.+...++++-.+.++...+|
T Consensus 638 ed~lellfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~md 717 (781)
T KOG2224|consen 638 EDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMD 717 (781)
T ss_pred cchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcC
Confidence 654 479999999999999999999999999999877667899999999999999999888889999999999998999
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 018436 310 LDAILRDAEALCICAGEN 327 (356)
Q Consensus 310 ~~~ll~~A~~l~~~~~~~ 327 (356)
-+-++++|..|..++.-.
T Consensus 718 gelilrkar~ll~qfr~l 735 (781)
T KOG2224|consen 718 GELILRKARGLLHQFRLL 735 (781)
T ss_pred chhhHHHHHHHHHHHhhc
Confidence 999999999997765443
No 10
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=100.00 E-value=2e-34 Score=269.03 Aligned_cols=253 Identities=20% Similarity=0.348 Sum_probs=215.8
Q ss_pred CCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhchhh
Q 018436 43 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID 122 (356)
Q Consensus 43 ~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~I~ 122 (356)
....++.+. .+.|+|+.+|+.+|..|||+.. +. ...|..+ ++..+. ...+||+
T Consensus 343 ~k~~qI~r~-a~vdvpp~~R~~iW~aLL~l~e-~~------------~a~y~~I-Dk~Ts~------------~tdrqie 395 (725)
T KOG1093|consen 343 KKRLQILRE-AYVDVPPLYRGFIWAALLQLEE-NH------------TAFYTLI-DKGTSH------------STDRQIE 395 (725)
T ss_pred HHHHHHHHH-hccCCChhHhHHHHHHHhcCcc-cc------------chhhhhh-hcCCCC------------cchhhhh
Confidence 334455543 3789999999999999998721 11 2334333 322222 2246999
Q ss_pred hcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHh-hccchhHHHHHHHHHhcCCC-CCC
Q 018436 123 KDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPN-FNR 200 (356)
Q Consensus 123 ~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~-~~E~~af~~~~~l~~~~~~~-f~~ 200 (356)
.|++|++......+.+. +.++|+|+|.|++.++|...|.||+..+|+||++.. .+|+.||.|+..++-++..+ |..
T Consensus 396 vdiprchQyd~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflk 473 (725)
T KOG1093|consen 396 VDIPRCHQYDELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLK 473 (725)
T ss_pred cccchhhhcccccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998888877654 589999999999999999999999999999998874 57999999999999998775 444
Q ss_pred -CchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHH
Q 018436 201 -DQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAI 279 (356)
Q Consensus 201 -~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lai 279 (356)
+..-+...+.+|.+++..+||+|++||...|+.+++||++||+|+|+++||.+.++.+||.++.++. .|.+.+++|+
T Consensus 474 dns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~--SFplmi~vAi 551 (725)
T KOG1093|consen 474 DNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS--SFPLMIGVAI 551 (725)
T ss_pred cCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC--ccHHHHHHHH
Confidence 4467788999999999999999999999999999999999999999999999999999999998764 6889999999
Q ss_pred HHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 018436 280 LKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 329 (356)
Q Consensus 280 l~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~~~~~~ 329 (356)
+...|+.|+++ ++.|++.++.+.| ++|++.+++.++.++..+|.+..
T Consensus 552 l~~lR~~LLa~--nfne~illf~d~p-dldId~~Ires~~l~e~tP~sit 598 (725)
T KOG1093|consen 552 LIQLRDPLLAC--NFNECILLFSDLP-DLDIDVCIRESYHLMETTPKSIT 598 (725)
T ss_pred HHHhhhhhhhC--CchhheeeeccCC-cccHHHHHHHHhhhhhCCCCCCC
Confidence 99999999987 8999999999999 99999999999999999998754
No 11
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=252.23 Aligned_cols=265 Identities=21% Similarity=0.336 Sum_probs=225.2
Q ss_pred HHHHhccccCCCCCC---HHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChH
Q 018436 30 EEWTTFLDNEGRVMD---SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 106 (356)
Q Consensus 30 ~~W~~~l~~~~~~~~---~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 106 (356)
..|.+.+.+.+..+. ..++++ +.+.|+|.+.|+.+|..+.|. ......+.+.|.++.+.....
T Consensus 174 k~W~~~f~~~G~~~~~~qt~~~~K-lv~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G~--- 239 (671)
T KOG4347|consen 174 KFWKKYFIKDGPNMNQIQTILLRK-LLYNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTGK--- 239 (671)
T ss_pred HHHHHHHHHhcccccHHHHHHHHH-HHHHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccCC---
Confidence 449988888787755 467887 558999999999999999998 556677889999998865441
Q ss_pred HHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHH
Q 018436 107 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 186 (356)
Q Consensus 107 ~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~ 186 (356)
.+...+.|++|+.|..|+++-|+.+. +...|+|||.||++.||++||||-||-+++.++.++ .|+.|||+
T Consensus 240 -------~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwl 309 (671)
T KOG4347|consen 240 -------RSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWL 309 (671)
T ss_pred -------cccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHHH
Confidence 22345689999999999999999865 479999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhcCCCC-CCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhc
Q 018436 187 FVALMERLGPNF-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 265 (356)
Q Consensus 187 ~~~l~~~~~~~f-~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~ 265 (356)
++.+.+.+.+.| .....|......+|+.+++.+.|.|+.|+...| ...+...+||+|+|...+|++...||.|+||.+
T Consensus 310 l~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~e 388 (671)
T KOG4347|consen 310 LSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYE 388 (671)
T ss_pred HHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhc
Confidence 999999988764 556678888999999999999999999999999 667799999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCC----------------CCHHHHHHHHHHHHH
Q 018436 266 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----------------IDLDAILRDAEALCI 322 (356)
Q Consensus 266 ~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~----------------~d~~~ll~~A~~l~~ 322 (356)
| ...++-+|+||+..+.+.|+++. |-.+++..+.++-+. +.+..|+..|+.-+.
T Consensus 389 G--~rvlFqiaLail~~N~~~il~~~-dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg 458 (671)
T KOG4347|consen 389 G--PRVLFQIALAILKQNAERILSAT-DDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFG 458 (671)
T ss_pred c--cHHHHHHHHHHHHhhHHHhcccC-CchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhc
Confidence 7 48999999999999999999987 667777777664211 235667777766544
No 12
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=249.68 Aligned_cols=256 Identities=20% Similarity=0.383 Sum_probs=216.0
Q ss_pred HHHHhcccc--CCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHH
Q 018436 30 EEWTTFLDN--EGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 107 (356)
Q Consensus 30 ~~W~~~l~~--~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 107 (356)
+.|++++.. .+...+.+.+-.. .+.|+|..-|+.+|.++.--+..+.-.. ...+...-.|..+
T Consensus 550 ~~wek~~e~~~~~~k~d~ed~~~~-l~~gvprsrrgeiwtflA~q~~~~~~l~---~~kr~~~~p~~~l----------- 614 (948)
T KOG4436|consen 550 ETWEKILERTRIKIKKDMEDLHSA-LRTGVPRSRRGEIWTFLAEQHSLNHALP---DKKRPPDFPYKEL----------- 614 (948)
T ss_pred HHHHHHHHHhhhcccccHHHHHHH-HHccCchhhhHHHHHHHHHHHHHhccCC---cccCCCCCChHHH-----------
Confidence 579999877 3445688888874 5899999999999999863211110000 0000111112222
Q ss_pred HHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHH
Q 018436 108 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 187 (356)
Q Consensus 108 ~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~ 187 (356)
...+.+..+.|..|+-||||++++|+.+-+.++..+.|+|.+|+..+|++|||||..++||+||+++ +|+.||.++
T Consensus 615 ---lkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afell 690 (948)
T KOG4436|consen 615 ---LKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELL 690 (948)
T ss_pred ---HHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHH
Confidence 2345567789999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHHh--cCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhc
Q 018436 188 VALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 265 (356)
Q Consensus 188 ~~l~~~--~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~ 265 (356)
..||.. .+..|.+++..++..+..+..++..++++||+|++++.|.|..|+.+||+|+|+..+|+..+.|++|.++..
T Consensus 691 k~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq 770 (948)
T KOG4436|consen 691 KFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQ 770 (948)
T ss_pred HHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhh
Confidence 999975 445789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCC
Q 018436 266 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR 307 (356)
Q Consensus 266 ~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~ 307 (356)
| ..+.+.++++++..++..|++++ ++++|+.++++...+
T Consensus 771 ~--tevifK~a~~llsv~k~~l~e~d-n~e~i~d~~k~~~p~ 809 (948)
T KOG4436|consen 771 G--TEVIFKVALSLLSVHKQLLLEKD-NFEEIVDFLKTTLPK 809 (948)
T ss_pred c--cchhhhhHHHHHHhhHHHHHhhh-hHHHHHHHHHHhhhh
Confidence 6 57889999999999999999998 999999999986433
No 13
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-30 Score=240.28 Aligned_cols=261 Identities=25% Similarity=0.357 Sum_probs=207.4
Q ss_pred chHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcC---------------------ChHHHHhhhHHHHhh
Q 018436 60 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI---------------------SPEQARRFTKFRERK 118 (356)
Q Consensus 60 ~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~---------------------~~~~~~~~~~~~~~~ 118 (356)
..|+..|+.+||+.|.+.+. |.......+..|..+...+... +...+..+....|..
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss--~id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~ 105 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSS--WIDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE 105 (625)
T ss_pred hhhhHHHHHhheecCCCchh--HHHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence 57999999999999887553 3556666677777654432211 112233444556788
Q ss_pred chhhhcccccCCCC-cccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhc------------------
Q 018436 119 GLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED------------------ 179 (356)
Q Consensus 119 ~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~------------------ 179 (356)
+.|+.|+.||||.+ .+|+.+.. +..|++||..|+..+|.+||-||||++.|+++++...
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs~~~--q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f 183 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQSPEV--QGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF 183 (625)
T ss_pred HhhcchhhccCcchhhhhcCchh--hHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence 99999999999999 77776554 7899999999999999999999999999999887621
Q ss_pred ------------cchhH--HHHHHHHHhcCCCC------------------------CCCchhHHHHHHHHHHHHHhhCH
Q 018436 180 ------------ESQSF--WCFVALMERLGPNF------------------------NRDQNGMHSQLFALSKLVELLDN 221 (356)
Q Consensus 180 ------------E~~af--~~~~~l~~~~~~~f------------------------~~~~~~~~~~~~~~~~ll~~~~p 221 (356)
+.+.+ .+++.+|..-..+| ..+.+.+......+..++.+.|+
T Consensus 184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~ 263 (625)
T KOG1091|consen 184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK 263 (625)
T ss_pred chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence 22334 35555554211111 11233455666778899999999
Q ss_pred HHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHH-HHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHH
Q 018436 222 PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE-VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKF 300 (356)
Q Consensus 222 ~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD-~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~ 300 (356)
.|+.||.+.|+++.+|.++|...||.++||+.+++.+|| +.+..++...++-++++|||.+.++.|+.. +...+++.
T Consensus 264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss--~~~tcL~~ 341 (625)
T KOG1091|consen 264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSS--EYQTCLQY 341 (625)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh--cchhHHHH
Confidence 999999999999999999999999999999999999999 777777777788899999999999999976 67779999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHhCC
Q 018436 301 INELSGRIDLDAILRDAEALCICAGE 326 (356)
Q Consensus 301 l~~~~~~~d~~~ll~~A~~l~~~~~~ 326 (356)
+.++|..+|++.+++.|..+..-++.
T Consensus 342 Lm~yP~~~Dv~~~iekAl~l~~~~~K 367 (625)
T KOG1091|consen 342 LMNYPEIIDVDKFIEKALHLQKLFPK 367 (625)
T ss_pred HhcCCCcCcHHHHHHHHHHHHHhccc
Confidence 99999999999999999999876666
No 14
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.97 E-value=4.7e-31 Score=253.80 Aligned_cols=306 Identities=50% Similarity=0.828 Sum_probs=268.1
Q ss_pred CCCCCCCCHHHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHh
Q 018436 21 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 100 (356)
Q Consensus 21 ~~~~~~l~~~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~ 100 (356)
.++++.++.+.|......+++.......+....+.|+-+.+|+.+|+.+.++.+++.+..++...... ...|...+.+|
T Consensus 142 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW 220 (488)
T KOG2197|consen 142 DNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQW 220 (488)
T ss_pred cCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhh
Confidence 35566688899998877777665555555556677776799999999999999999988776666666 78899999999
Q ss_pred hcCChHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhcc
Q 018436 101 QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 180 (356)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E 180 (356)
......+........+....|.+|+.||.+.+.++..+..++...|..||.+|+.+++++||||||+++.++++.++++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de 300 (488)
T KOG2197|consen 221 SSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDE 300 (488)
T ss_pred eeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCc
Confidence 88776655443334445578999999999999999876556689999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHH
Q 018436 181 SQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE 260 (356)
Q Consensus 181 ~~af~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD 260 (356)
.+|||||+.+|.+...+|..+..+++..+..+..+++..+|.+|+||+..+.....|+++|+..+|-++|..++++++|.
T Consensus 301 ~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWE 380 (488)
T KOG2197|consen 301 VEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWE 380 (488)
T ss_pred hHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCCC
Q 018436 261 VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN 327 (356)
Q Consensus 261 ~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~~~~ 327 (356)
++.+..++.+|.++++.|++....+.|+.+..++.+++..++....+.|+..++..|..+..+....
T Consensus 381 vlw~~~~~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~ 447 (488)
T KOG2197|consen 381 VLWTDLPSPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQM 447 (488)
T ss_pred HHHhcCccchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhc
Confidence 9999877789999999999999999999988789999999999888999999999999987654443
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.95 E-value=5.1e-28 Score=213.68 Aligned_cols=257 Identities=19% Similarity=0.249 Sum_probs=205.0
Q ss_pred CCCCHHHHHHHHhc-CC-CCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhh
Q 018436 41 RVMDSNALRKRIFY-GG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 118 (356)
Q Consensus 41 ~~~~~~~l~~~~~~-~G-iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (356)
...+.+.||..... +| +.+++|+.+|+.|+|..-...+ ...+.+..+.+ +..
T Consensus 44 ~~~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~-----------~~~~~~~~q~h---------------kd~ 97 (395)
T KOG2595|consen 44 LKKDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD-----------ATSTLTPVQKH---------------KDY 97 (395)
T ss_pred hhccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc-----------ccccCChhhhC---------------ccc
Confidence 34677888875544 34 6889999999999997322221 11111112111 224
Q ss_pred chhhhcccccCCCCcc--cCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHh-cC
Q 018436 119 GLIDKDVVRTDRSVTF--FDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMER-LG 195 (356)
Q Consensus 119 ~~I~~Dv~Rt~~~~~~--f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~-~~ 195 (356)
+|+..|+.|++...+. -.+.....++.|..++......+|...|.||+|+||..||+++ .|.+|+.++..+-.. ++
T Consensus 98 nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~lr 176 (395)
T KOG2595|consen 98 NQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHLR 176 (395)
T ss_pred ceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHHH
Confidence 6999999999866542 1111123456777777777788999999999999999999999 599999999988864 44
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCC-hHHHHHHHHHHHhcccchhHHHH
Q 018436 196 PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLWTHYLSEHLHLY 274 (356)
Q Consensus 196 ~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~-~~~~~riwD~~l~~~~~~~~l~~ 274 (356)
+.+.+++.+....+..+..+++..+|+||+.|++..+.+. |+.+|++|||+|.++ +..+.|++|+|++..+ -..+|
T Consensus 177 dfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgtl-FaLsWllTWFaH~L~~~~~vvRlfD~Flas~p--l~piy 253 (395)
T KOG2595|consen 177 DFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGTL-FALSWLLTWFAHNLKDIRIVVRLFDFFLASHP--LLPIY 253 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccce-ehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc--chhHH
Confidence 4556777888888899999999999999999999988876 999999999999998 9999999999999764 47789
Q ss_pred HHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCCC
Q 018436 275 VCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN 327 (356)
Q Consensus 275 ~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~~~~ 327 (356)
++.+++...+++|+++..|+.-+...++.+|.++.++++++.+..++.+.+..
T Consensus 254 v~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~~~t 306 (395)
T KOG2595|consen 254 VYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRKPAT 306 (395)
T ss_pred HHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcCChh
Confidence 99999999999999998888889999999999999999999998887765554
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=219.33 Aligned_cols=243 Identities=23% Similarity=0.395 Sum_probs=197.9
Q ss_pred CCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhchhh
Q 018436 43 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID 122 (356)
Q Consensus 43 ~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~I~ 122 (356)
....++.. +...|||.++|..+|..+++..-. .....-...|.... ....+. ..++|
T Consensus 133 ~~~~~l~~-~~~~gip~~~r~~~W~l~~~~~~~--------~~~~~~~~l~~~~~---~~~~~~----------~~~~~- 189 (397)
T KOG1102|consen 133 RRPLKLSR-RVLVGIPDELRGLVWQLLLYAVEE--------SLFDSLDELYRLQL---DEPEPH----------ESEII- 189 (397)
T ss_pred ccHHHHHH-HhhccccHHHHHHHHHHhcccHhh--------hhhhhHHHHHHHhh---ccCCCc----------hhHHH-
Confidence 34456665 458999999999999999986100 00000011111111 111111 12366
Q ss_pred hcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHhcC-CCCCCC
Q 018436 123 KDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG-PNFNRD 201 (356)
Q Consensus 123 ~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~~~-~~f~~~ 201 (356)
+|+.||+|.+..|....+.+++.+.+|+.+|+.++|++||||||..++++++.++. |++||++++.+|.... ..|..+
T Consensus 190 ~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~ 268 (397)
T KOG1102|consen 190 RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPG 268 (397)
T ss_pred hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhccccc
Confidence 99999999999999988888999999999999999999999999999999999995 9999999999998653 345677
Q ss_pred chhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 018436 202 QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILK 281 (356)
Q Consensus 202 ~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lail~ 281 (356)
..+++..+..+..+++...|.++.|+...+++..+|+..|++|+|+..+|++.+.|+||.++.+| ..+++.+++++++
T Consensus 269 ~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g--~~i~~~~~~~l~~ 346 (397)
T KOG1102|consen 269 FSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEG--VSILFRFSLALLK 346 (397)
T ss_pred CCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhc--hHHHHHHHHHHhh
Confidence 88999999999999999999999999999999999999999999999999999999999999988 5788999999999
Q ss_pred HhHHHHhcCCCCHHHHHHHHhcc-CCCCCHHHH
Q 018436 282 RYRNKIMGEQMDFDTLLKFINEL-SGRIDLDAI 313 (356)
Q Consensus 282 ~~~~~ll~~~~d~~~i~~~l~~~-~~~~d~~~l 313 (356)
...+.++.. +++.+++++++. +...+....
T Consensus 347 ~~~~~~~~~--~~e~~~~~l~~~~~~~~~~~~~ 377 (397)
T KOG1102|consen 347 HKADDLLDL--DFESLLSYLRVDLPKSYDSELS 377 (397)
T ss_pred hhhHHHhhc--cHHHHHHHHhcccHhhcCccch
Confidence 999999954 899999999874 334444333
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-24 Score=180.40 Aligned_cols=191 Identities=20% Similarity=0.359 Sum_probs=162.9
Q ss_pred CHHHHHhccccCCCCCC--HHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCCh
Q 018436 28 GSEEWTTFLDNEGRVMD--SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 105 (356)
Q Consensus 28 ~~~~W~~~l~~~~~~~~--~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~ 105 (356)
++++|..++++|...++ -++++.+| ++|||+.+|+..|..+.|..... .+++..|..+..+-...
T Consensus 74 ReskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~pG~p-- 140 (267)
T KOG2221|consen 74 RESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPAPGDP-- 140 (267)
T ss_pred hHHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCCCCCC--
Confidence 78899999999876644 35688765 89999999999999999985322 23455565555421110
Q ss_pred HHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHH
Q 018436 106 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 185 (356)
Q Consensus 106 ~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~ 185 (356)
...+.|.+|+.|-||.+.+|.+....++..|.|+|.+|..++|+.||||+=.-|+++++..+. +.+|||
T Consensus 141 ----------~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~ 209 (267)
T KOG2221|consen 141 ----------KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFW 209 (267)
T ss_pred ----------cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHH
Confidence 123589999999999999999988888999999999999999999999999999999999995 999999
Q ss_pred HHHHHHHhcCCC-CCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHH
Q 018436 186 CFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 242 (356)
Q Consensus 186 ~~~~l~~~~~~~-f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~ 242 (356)
||+.+.+++.+. |.++...++.+-.++..|+++.+|-.|.|+...++++..|...||
T Consensus 210 ~~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 210 CFVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999998875 566788999999999999999999999999999999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=151.55 Aligned_cols=238 Identities=17% Similarity=0.290 Sum_probs=177.2
Q ss_pred CCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhchhhhcccccCCCCccc
Q 018436 56 GVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFF 135 (356)
Q Consensus 56 GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f 135 (356)
|=|..+ |+.+||+..+....+.|+.+..... ..++.+|..|.......=
T Consensus 36 G~~~~~----W~~~L~V~~K~d~l~~wd~iydLp~---------------------------Q~~lr~DC~~~~d~l~n~ 84 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPNPLDDWDQIYDLPN---------------------------QCALRNDCRKLADGLKNK 84 (669)
T ss_pred CCCHHH----HHHHhcccCCCCchhhHHHHhCCch---------------------------hhHHHHHHHHHHhhcCCc
Confidence 445544 9999999766555554443221111 125666665543322222
Q ss_pred CCCCCccHHHHHHHHHHHhcccCCCCcccchh--HHHHHHHHHhhccchhHHHHHHHHHhcCCC-CCCCchhHHHHHHHH
Q 018436 136 DGDDNPNVHLLRDILLTYSFYNFDLGYCQGMS--DLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFAL 212 (356)
Q Consensus 136 ~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~--~i~~~ll~~~~~E~~af~~~~~l~~~~~~~-f~~~~~~~~~~~~~~ 212 (356)
.++..+....|..++.-|+. +.++.|..... .+.-+++.+-.+-.+.|.+|..+++++.|. -.++ ..-+..|
T Consensus 85 ee~~v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpk----g~~Fh~F 159 (669)
T KOG3636|consen 85 EEDKVPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPK----GQIFHLF 159 (669)
T ss_pred hhhccchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCC----CccchHH
Confidence 22233344577888877765 55778886544 556667666557899999999999998763 2222 2345668
Q ss_pred HHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHHHHHhHHHHhcCCC
Q 018436 213 SKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQM 292 (356)
Q Consensus 213 ~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~ 292 (356)
+-+|+.|+|+|..||....+.|.+|+..||-+||+...+.+.+.-+||.++-.+.. -+++++++-+|...+++|++.+.
T Consensus 160 RLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP-F~vffLaliiLiNake~ILq~~s 238 (669)
T KOG3636|consen 160 RLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP-FLVFFLALIILINAKEEILQVKS 238 (669)
T ss_pred HHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-eehHHHHHHHhcccHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999987753 46678888899999999997754
Q ss_pred C-HHHHHHHHhccCCCC---CHHHHHHHHHHHHHHhCCCCCC
Q 018436 293 D-FDTLLKFINELSGRI---DLDAILRDAEALCICAGENGAA 330 (356)
Q Consensus 293 d-~~~i~~~l~~~~~~~---d~~~ll~~A~~l~~~~~~~~~~ 330 (356)
| .+++++||.+.|..+ |+..+.+.|.-...++|++-+.
T Consensus 239 dsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~KTP~sfrk 280 (669)
T KOG3636|consen 239 DSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDKTPESFRK 280 (669)
T ss_pred ccHHHHHHHHHcCchhcccccchhHHHHHHHHhhcChHHhhh
Confidence 4 689999999998654 7889999999999999887554
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.68 E-value=1.9e-16 Score=153.94 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=199.4
Q ss_pred CCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhchhh
Q 018436 43 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID 122 (356)
Q Consensus 43 ~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~I~ 122 (356)
.+..+++. .+.+|+|+..|..+|..++...... ...-.+.|+++.... ...++. -+.-.|.
T Consensus 172 ~s~~~l~e-~Ve~~~p~~frli~~qlLssatd~~---------q~~I~e~~sdl~~~s----~~~Ek~-----~~~~~Ir 232 (948)
T KOG4436|consen 172 KSLHKLKE-LVEGGIPMHFRLIRWQLLSSATDRE---------QALIFEDYSDLAPCS----SQQEKE-----LHIGIIR 232 (948)
T ss_pred hchhhhHH-HHhcCCchHHHHHHHHHhcccccch---------hhHHHHHHHHHhhhc----chhhhh-----HHHHHHH
Confidence 44567777 4589999999999999999763211 112235565555431 111111 2234899
Q ss_pred hcccccCCCCcccCCCCCc-------cHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 018436 123 KDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG 195 (356)
Q Consensus 123 ~Dv~Rt~~~~~~f~~~~~~-------~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~~~ 195 (356)
.|+.||.|.+.+|++..+. +++.|+|+..+|+...-+++||||-+.+++.+++.+ +++.+|..++.+|..++
T Consensus 233 rdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~r 311 (948)
T KOG4436|consen 233 RDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYR 311 (948)
T ss_pred HHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhc
Confidence 9999999999999987665 689999999999999999999999999999999999 59999999999998654
Q ss_pred --CCCCCCchhHHHHHHHHHHHHHhhCH-HHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHH
Q 018436 196 --PNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLH 272 (356)
Q Consensus 196 --~~f~~~~~~~~~~~~~~~~ll~~~~p-~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l 272 (356)
..+.+.+..+..++..++...+...| .++.|+.+.+++.+.|+..||++.|...+|+....++.|.|.++| ....
T Consensus 312 l~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~eg--llk~ 389 (948)
T KOG4436|consen 312 LRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEG--LLKR 389 (948)
T ss_pred ccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhcccccccccccc--HHHH
Confidence 56888888888888999999999999 999999999999999999999999999999999999999998766 4566
Q ss_pred HHHHHHHHHH-hHHHHhcCCCCHHHHHHHHhc-cCCCC--CHHHHHHHHHHH
Q 018436 273 LYVCVAILKR-YRNKIMGEQMDFDTLLKFINE-LSGRI--DLDAILRDAEAL 320 (356)
Q Consensus 273 ~~~~lail~~-~~~~ll~~~~d~~~i~~~l~~-~~~~~--d~~~ll~~A~~l 320 (356)
++..+|++.. ..-.+++ .|++.....++. .+..+ +++.+...|...
T Consensus 390 fr~~ia~~~~~~d~~~~s--~D~EG~~~~~qr~~s~~vggtp~k~~t~a~q~ 439 (948)
T KOG4436|consen 390 FRDSIAYLHQLRDIELES--LDMEGMLSYFQRNRSNTVGGTPDKLRTAAWQV 439 (948)
T ss_pred HhhhHHHHHHHhhhhhhc--cCccccccchhhccccccCCCCchHHHHHHHH
Confidence 6999999933 3444453 388888777763 33332 455555555443
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8.3e-12 Score=109.46 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=175.8
Q ss_pred CHHHHHHHHhcCCC---CCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHHhhhHHHHhhch
Q 018436 44 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 120 (356)
Q Consensus 44 ~~~~l~~~~~~~Gi---P~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (356)
...+|++ +.+.|. .+.+|+.|+..+..-.|...- ......|.+++.+.-.......-..++ -
T Consensus 31 elqelkq-larqgywaqshalrgkvyqrlirdipcrtv--------tpdasvysdivgkivgkhsssclplpe------f 95 (559)
T KOG2801|consen 31 ELQELKQ-LARQGYWAQSHALRGKVYQRLIRDIPCRTV--------TPDASVYSDIVGKIVGKHSSSCLPLPE------F 95 (559)
T ss_pred hHHHHHH-HHhcchHHhhhhhhhHHHHHHHhcCCcccc--------CCchhHHHHHHHHHhccCCcccccchh------h
Confidence 3567777 567886 567999999999887665432 122345666665422211100000000 0
Q ss_pred hhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHhcCCC---
Q 018436 121 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN--- 197 (356)
Q Consensus 121 I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~~~~~--- 197 (356)
.|-. ..|++-+ + ..+....+.||...++..|++++|..+..+++++|.+.-||+++|.--+.++..--+.
T Consensus 96 --vdnt-qvpsycl--n--argegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrl 168 (559)
T KOG2801|consen 96 --VDNT-QVPSYCL--N--ARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRL 168 (559)
T ss_pred --cccC-cCchhhh--c--CcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhh
Confidence 0000 0111111 1 2234678999999999999999999999999999999889999998777776532221
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHH
Q 018436 198 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCV 277 (356)
Q Consensus 198 f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~l 277 (356)
...+.-.....+..|..++.++....++.+-...-+.......|-..+|.. +|+-...|++|+|+.+| .+.++++++
T Consensus 169 idqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlfge-lplcyfarvfdvflveg--ykvlyrval 245 (559)
T KOG2801|consen 169 IDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFGE-LPLCYFARVFDVFLVEG--YKVLYRVAL 245 (559)
T ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc-chHHHHHHHhhheeecc--hHHHHHHHH
Confidence 222334556677789999999988888777666555555667888888865 99999999999999987 589999999
Q ss_pred HHHHHhHHHHh----cCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 018436 278 AILKRYRNKIM----GEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 322 (356)
Q Consensus 278 ail~~~~~~ll----~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~ 322 (356)
||++...+.-- +++.-..+|..|.+.+...+.+++++.+|..++.
T Consensus 246 ailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 246 AILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred HHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 99999876543 3322245777888888888999999999998854
No 21
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.01 E-value=1.7e-11 Score=114.13 Aligned_cols=269 Identities=28% Similarity=0.488 Sum_probs=187.7
Q ss_pred CCCCCCHHHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhc
Q 018436 23 RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQS 102 (356)
Q Consensus 23 ~~~~l~~~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~ 102 (356)
....++++.|+++..+. .+....-+.. ..++|.....|+.+|+...+.+..++.....+.....-...|+..+-.+..
T Consensus 527 a~~glt~~~W~qy~~d~-t~~e~~~l~~-~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~ 604 (813)
T KOG1648|consen 527 ASAGLTEKFWKQYRADP-TIEEWRVLEA-EVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR 604 (813)
T ss_pred ccccccHHHHHHHhcCC-chHHHHHHHH-HHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh
Confidence 34568999999998653 3333344444 568899999999999999998877776655454445555667665544333
Q ss_pred CChHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccch
Q 018436 103 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 182 (356)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~ 182 (356)
-..+.|++|+.|...+..+|.+.++ .++ +++...|...+-+-||.|||.++.++++..++||..
T Consensus 605 -------------~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~ 668 (813)
T KOG1648|consen 605 -------------ANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEAL 668 (813)
T ss_pred -------------hheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccCCcCCChhhccc
Confidence 2356899999999999999988665 455 888889999999999999999999999999999887
Q ss_pred hHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHH
Q 018436 183 SFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 262 (356)
Q Consensus 183 af~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~ 262 (356)
+-.||.-+|-.-+..|.. .+++...+-... +++..+|-. ..++. ..-..++||..-|-+.++.+-...+|..+
T Consensus 669 ~~e~~s~~~~~q~~~~~q-~~~~~~~l~~~r-~~~v~~~l~----s~id~-~qa~~f~~~~~~~~~~~s~~~~~~~~~~~ 741 (813)
T KOG1648|consen 669 TLECFSLLMLRQRGKFPQ-RPGMSKCLLNLR-LIQVVDPLI----SDIDY-AQALSFRWFLLDFKRELSYECTYKVWEVI 741 (813)
T ss_pred ccCCCcHHHHHhcccCCC-CCCccccccccc-chhhhcchh----cchhh-hhhcceeeeccCcccccCCCCcceeeEee
Confidence 777777776554444432 233333322222 444555511 11111 12245899999999999999888888888
Q ss_pred Hhccc---chhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHH
Q 018436 263 WTHYL---SEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDA 317 (356)
Q Consensus 263 l~~~~---~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A 317 (356)
..... ...+-+++++|. -...+.+...+.+..+.++|++......|.++++.-|
T Consensus 742 ~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~ 798 (813)
T KOG1648|consen 742 WAAQRLRITDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSA 798 (813)
T ss_pred ccccccccCcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcC
Confidence 76321 135677888888 4555666666678888999998877666666655433
No 22
>PF14961 BROMI: Broad-minded protein
Probab=97.61 E-value=0.0015 Score=68.41 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh-ccchhHHHHHHHHHhc------CC--C---CCCC------c-hh
Q 018436 144 HLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-DESQSFWCFVALMERL------GP--N---FNRD------Q-NG 204 (356)
Q Consensus 144 ~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~-~E~~af~~~~~l~~~~------~~--~---f~~~------~-~~ 204 (356)
++--+++..|..++..-+| .|....++.+++++. |-+.+...+..+-... .+ + +.+. . +-
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 3344555555555555445 588887777777764 4455555555443321 11 1 1111 1 11
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHHHHHhH
Q 018436 205 MHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYR 284 (356)
Q Consensus 205 ~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lail~~~~ 284 (356)
....+..++.+++...|.++.-|...|..+...+.+|+.-+|=+.++...+..-.=..+..| .+|.+|+++|+++..+
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G--~dyqvY~~VailkHlq 1240 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYG--PDYQVYICVAILKHLQ 1240 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcC--ccceeehhHHHHHHhh
Confidence 22355679999999999999999999999999999999999999999776665555555455 4788999999999999
Q ss_pred HHHhcCCCCHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Q 018436 285 NKIMGEQMDFDTLLKFINELS-GRIDLDAILRDAEALC 321 (356)
Q Consensus 285 ~~ll~~~~d~~~i~~~l~~~~-~~~d~~~ll~~A~~l~ 321 (356)
++|++.. --.++..|++.-+ ..+.+.+-+.-...|-
T Consensus 1241 ~~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~~Le 1277 (1296)
T PF14961_consen 1241 PEILQHT-QTQDLQVFLKEEALRGFRVSDYLEYMENLE 1277 (1296)
T ss_pred HHHHHhh-hhchHHHHhhhccccceeHHhHHHHHHHHH
Confidence 9999774 4456777787654 3456666665555553
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=96.66 E-value=0.0031 Score=61.79 Aligned_cols=79 Identities=37% Similarity=0.670 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHh
Q 018436 22 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 100 (356)
Q Consensus 22 ~~~~~l~~~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~ 100 (356)
...+.+.-++|.+.+..++...+..++-+.+..+||++.+|+.+|..|+|.++.+++.+++..+.......|..+...-
T Consensus 43 ~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 43 KPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred ccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 5566778899999999988887655555557789999999999999999999999999999999999999998888753
No 24
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=69.96 E-value=1.8 Score=40.95 Aligned_cols=50 Identities=46% Similarity=0.735 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcccC----CCCcccchhHHHHHHHHHhhccchhHHHHHHHHHh
Q 018436 144 HLLRDILLTYSFYNF----DLGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 193 (356)
Q Consensus 144 ~~L~rIL~~~~~~~p----~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~ 193 (356)
+.|.-||+-..+... -+|-.|||+++++++|.-..+|.++||||+.+|.+
T Consensus 546 dllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 546 DLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 455566654433222 25788999999999998888999999999999984
No 25
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=59.80 E-value=20 Score=23.54 Aligned_cols=41 Identities=0% Similarity=-0.070 Sum_probs=35.6
Q ss_pred HHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCC
Q 018436 211 ALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE 251 (356)
Q Consensus 211 ~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~ 251 (356)
.|.++--++.|+.-..|++.||..+.-...-++++|+++..
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999889999999987654
No 26
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=39.69 E-value=22 Score=19.57 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=11.5
Q ss_pred CCcccchhHHHHHHHH
Q 018436 160 LGYCQGMSDLLSPILF 175 (356)
Q Consensus 160 igY~QGm~~i~~~ll~ 175 (356)
-||.||+.+...-.|.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 3899999886655544
No 27
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=35.87 E-value=5.8 Score=38.17 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=70.9
Q ss_pred hhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHHHHHHHHhcCCCCC
Q 018436 120 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFN 199 (356)
Q Consensus 120 ~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~~~~l~~~~~~~f~ 199 (356)
.|..|+..|+. +....+..++. |.++..++++++|| +..+.+ .......
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh---------------------ccccccc
Confidence 46677777765 33332222222 88899999999999 554444 1111122
Q ss_pred CCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhccc
Q 018436 200 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL 267 (356)
Q Consensus 200 ~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~ 267 (356)
.+...................+.-..|+...+ ........|..-.|..........++||.+..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGE 117 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhH
Confidence 22222222222233444455566667777777 66677778888888888888888899998887653
No 28
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=30.99 E-value=86 Score=24.18 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCc--hHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHH
Q 018436 46 NALRKRIFYGGVDHK--LRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKR 98 (356)
Q Consensus 46 ~~l~~~~~~~GiP~~--~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~ 98 (356)
.-||+.|-+..||++ ++..+..+.-.. .|+.+......+...+...|+.++.
T Consensus 34 ~yLK~~C~~~dlP~~~~I~~~a~~~A~~~-gWd~~~~~~~~l~~~se~~Y~~L~~ 87 (109)
T PF09691_consen 34 RYLKNDCGRSDLPDEQEIIRAAVIFAQQR-GWDTSNYNYQQLSQLSEESYQDLKK 87 (109)
T ss_dssp HHHHHHS--TTS--HHHHHHHHHHHHHHT-T--CGG--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCCCHHHHHHHHHHHHHHc-CCCcchhHHHHHHHHHHHHHHHHhc
Confidence 357888888999975 888888887754 6777766667788888888888885
No 29
>PF14425 Imm3: Immunity protein Imm3
Probab=27.04 E-value=3.1e+02 Score=21.45 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCC-----C---CCHHHHHHHHHHHHHH
Q 018436 252 YEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG-----R---IDLDAILRDAEALCIC 323 (356)
Q Consensus 252 ~~~~~riwD~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~-----~---~d~~~ll~~A~~l~~~ 323 (356)
.+.+.|+||-|--.|..+++++.+++|=+....+.+... -.+.++..|+++.. . -..+.|+.+...+...
T Consensus 28 ~eaiar~~~eye~lg~~EkiIv~~~igEi~l~~~~i~~~--~~~~i~~~L~~~~~~~~~~eLt~eE~~dL~~R~nkVL~~ 105 (117)
T PF14425_consen 28 SEAIARTFDEYENLGETEKIIVDTAIGEILLSHNKIFVG--QKEGITKRLSQFDFEEVKGELTQEEKEDLSQRINKVLDG 105 (117)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHhhcchHHhh--HHHHHHHHHHhcChHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 567889999985445557899999999988888876633 45677777776531 1 1355666777766666
Q ss_pred hCCCC
Q 018436 324 AGENG 328 (356)
Q Consensus 324 ~~~~~ 328 (356)
+....
T Consensus 106 l~~~~ 110 (117)
T PF14425_consen 106 LEKVE 110 (117)
T ss_pred HhcCc
Confidence 55443
No 30
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=24.27 E-value=12 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHh
Q 018436 45 SNALRKRIFYGGVDHKLRREVWAFL 69 (356)
Q Consensus 45 ~~~l~~~~~~~GiP~~~R~~vW~~l 69 (356)
..+|++.+...+||+..|..+|.+.
T Consensus 20 ~k~lkk~~~e~kiP~~~R~~~pll~ 44 (47)
T TIGR02433 20 SKKLKKLFIDAKVPPWLRDRIPLLF 44 (47)
T ss_pred CchHHHHHHHcCCCHHHHcCccEEE
Confidence 4578888878999999998765443
No 31
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=22.57 E-value=95 Score=20.87 Aligned_cols=28 Identities=21% Similarity=0.544 Sum_probs=18.9
Q ss_pred HHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHH
Q 018436 30 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVW 66 (356)
Q Consensus 30 ~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW 66 (356)
+.|++++.. +..++++ .|||...|..+=
T Consensus 21 ~~w~~lf~~-----~s~~LK~----~GIp~r~RryiL 48 (57)
T PF09597_consen 21 SDWEKLFTT-----SSKQLKE----LGIPVRQRRYIL 48 (57)
T ss_pred HHHHHHHhc-----CHHHHHH----CCCCHHHHHHHH
Confidence 358887753 3455554 599999998763
No 32
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=21.74 E-value=79 Score=24.09 Aligned_cols=47 Identities=9% Similarity=0.367 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHhcccc---CCCCCCHHHHHHHHhcCCCCCchHHHHHHHh
Q 018436 23 RQPPLGSEEWTTFLDN---EGRVMDSNALRKRIFYGGVDHKLRREVWAFL 69 (356)
Q Consensus 23 ~~~~l~~~~W~~~l~~---~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~l 69 (356)
+-+....+++..+++. .+..++..+.+..+.+.|+|.+.=..+|...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~La 52 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLAQIWNLA 52 (104)
T ss_dssp --SCCHHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence 3444455666665543 4456888899998889999999999999844
Done!