Query 018436
Match_columns 356
No_of_seqs 208 out of 1587
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 15:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 1.1E-53 3.8E-58 398.4 24.4 294 22-323 14-311 (334)
2 2qfz_A TBC1 domain family memb 100.0 1.4E-53 4.7E-58 400.2 24.6 293 22-328 19-340 (345)
3 1fkm_A Protein (GYP1P), ORF YO 100.0 3.8E-53 1.3E-57 402.6 26.7 287 28-328 7-386 (396)
4 3qye_A TBC1 domain family memb 100.0 8.3E-51 2.8E-55 379.3 20.7 271 28-320 29-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 4.3E-51 1.5E-55 377.8 17.0 261 29-320 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 4.6E-49 1.6E-53 360.9 17.5 266 29-326 20-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 4.9E-39 1.7E-43 292.0 26.0 252 30-326 27-288 (294)
8 1dxs_A P53-like transcription 18.9 63 0.0022 22.3 2.1 19 54-72 46-64 (80)
9 2js3_A Uncharacterized protein 15.6 46 0.0016 22.8 0.8 12 160-171 16-27 (96)
10 2lic_A Vitellogenin; lipid tra 13.4 1.8E+02 0.0062 15.7 2.6 17 338-354 19-35 (35)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=398.39 Aligned_cols=294 Identities=20% Similarity=0.346 Sum_probs=239.6
Q ss_pred CCCCCCCHHHHH-hccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHh
Q 018436 22 PRQPPLGSEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 100 (356)
Q Consensus 22 ~~~~~l~~~~W~-~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~ 100 (356)
.+...-+..+|. .++.+|+...+.+++|+ ++++|||+.+|+.||+.++|+. ...+...+.....+....|..+....
T Consensus 14 ~~~~~~~~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~ 91 (334)
T 2qq8_A 14 LYFQGNAVLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGG 91 (334)
T ss_dssp -CCSSCHHHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhcccc
Confidence 344445788998 69999988999999998 5589999999999999999985 35556666666655556665554332
Q ss_pred hcCChHHH-HhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhc
Q 018436 101 QSISPEQA-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED 179 (356)
Q Consensus 101 ~~~~~~~~-~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~ 179 (356)
...+..+. .......+..++|++||+||+|++++|+.. +++++.|+|||.+|+.+||++|||||||+|||+||+++ +
T Consensus 92 ~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~-~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~ 169 (334)
T 2qq8_A 92 SEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-D 169 (334)
T ss_dssp ---------------CCHHHHHHHHHHTSSGGGCSSSTT-STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-C
T ss_pred ccCcccccccccccchhHHHHHHHHHhhcCCCchhhcCC-CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-C
Confidence 11111000 000111345679999999999999999863 45789999999999999999999999999999999998 6
Q ss_pred cchhHHHHHHHHHhcC--CCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHH
Q 018436 180 ESQSFWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMR 257 (356)
Q Consensus 180 E~~af~~~~~l~~~~~--~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~r 257 (356)
|++|||||+++|++.. ..|..+.+++...+..++.+++.++|+||+||++.|+.+.+|+.+||+|+|++++|++.++|
T Consensus 170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lr 249 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACR 249 (334)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHH
Confidence 9999999999998653 35667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 018436 258 LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCIC 323 (356)
Q Consensus 258 iwD~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~ 323 (356)
|||.++++| ..+++++|+|++...++.|++. |+++++++++++|..+|++.++..|.++...
T Consensus 250 iWD~~l~eg--~~~l~~valaiL~~~~~~Ll~~--d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~ 311 (334)
T 2qq8_A 250 IWDVFCRDG--EEFLFRTALGILKLFEDILTKM--DFIHMAQFLTRLPEDLPAEELFASIATIQMQ 311 (334)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHSCCTTCCHHHHHHHHHHCCCE
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCcCCHHHHHHHHHHccCc
Confidence 999999987 5899999999999999999965 8999999999999889999999999988543
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.4e-53 Score=400.21 Aligned_cols=293 Identities=25% Similarity=0.464 Sum_probs=248.7
Q ss_pred CCCCCCCHHHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhh
Q 018436 22 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 101 (356)
Q Consensus 22 ~~~~~l~~~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~ 101 (356)
...+.-+.++|.++++.+ ..+.++||+. +++|||+.+|+.+|+.++|+.|.+. ++|.....+.+..|..+++++.
T Consensus 19 ~~~e~~r~~kw~~~l~~~--~~d~~~Lr~l-~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~ 93 (345)
T 2qfz_A 19 SEREASRLDKFKQLLAGP--NTDLEELRRL-SWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYY 93 (345)
T ss_dssp -----CHHHHHHHHHHCS--BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-
T ss_pred cchhHHHHHHHHHHHcCC--CCCHHHHHHH-HHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 444556788999999764 4889999985 5899999999999999999987664 3566777888999999999875
Q ss_pred cCChHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh---
Q 018436 102 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--- 178 (356)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~--- 178 (356)
.....+ ...+..++|++||+||+|+ ++|+.+ .+++.|+|||.+|+.+||++|||||||+||++|+.++.
T Consensus 94 ~~~~~~-----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~ 165 (345)
T 2qfz_A 94 DSRNDE-----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEY 165 (345)
T ss_dssp ------------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGG
T ss_pred cCCCcc-----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhh
Confidence 432211 1234567999999999999 999864 45789999999999999999999999999999998764
Q ss_pred ---------------------ccchhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchh
Q 018436 179 ---------------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFF 237 (356)
Q Consensus 179 ---------------------~E~~af~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~ 237 (356)
+|++|||||+.+|+++.++|..+.+++...+..++.+++.++|+|++||++.|+.+..|
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f 245 (345)
T 2qfz_A 166 IEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQF 245 (345)
T ss_dssp CC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHH
T ss_pred cccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhH
Confidence 28999999999999988889888999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHhcccch-hHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCC----CCHHH
Q 018436 238 CFRWVLIQFKREFEYEKTMRLWEVLWTHYLSE-HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDA 312 (356)
Q Consensus 238 ~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~-~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~----~d~~~ 312 (356)
+++||+|+|++++|++.++||||.++++|.+. .+++++|+|++...+++|+++. |+++++++|+++|.. .|++.
T Consensus 246 ~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~-d~~~il~~L~~~p~~~~~~~di~~ 324 (345)
T 2qfz_A 246 AFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEK-DFQELLLFLQNLPTAHWDDEDISL 324 (345)
T ss_dssp HHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCC-CHHHHHHHHTSCSCTTCCHHHHHH
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCCcCCchhHHHH
Confidence 99999999999999999999999999988643 3789999999999999999764 999999999999964 37999
Q ss_pred HHHHHHHHHHHhCCCC
Q 018436 313 ILRDAEALCICAGENG 328 (356)
Q Consensus 313 ll~~A~~l~~~~~~~~ 328 (356)
+++.|..+...+..+.
T Consensus 325 ll~~A~~l~~~~~~~~ 340 (345)
T 2qfz_A 325 LLAEAYRLKFAFADAP 340 (345)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhH
Confidence 9999999999886544
No 3
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=3.8e-53 Score=402.64 Aligned_cols=287 Identities=24% Similarity=0.486 Sum_probs=251.4
Q ss_pred CHHHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHH
Q 018436 28 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 107 (356)
Q Consensus 28 ~~~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 107 (356)
+.++|+++++.+. .++.++||+. +++|||+.+|+.+|+.++|+.+.+.+ +|.......+..|..+++++....
T Consensus 7 R~~kw~~lL~~~~-~~d~~~Lr~l-~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~--- 79 (396)
T 1fkm_A 7 RISKFDNILKDKT-IINQQDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ--- 79 (396)
T ss_dssp HHHHHHHHHSSCS-BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS---
T ss_pred HHHHHHHHHcCCC-CCCHHHHHHH-HHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhcc---
Confidence 5689999998753 5899999985 57899999999999999999887654 456777888999999998865421
Q ss_pred HHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh---------
Q 018436 108 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 178 (356)
Q Consensus 108 ~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~--------- 178 (356)
.....+..++|++||.||+|++++|+.+ .+++.|+|||.+|+.+||++|||||||+|+++||+++.
T Consensus 80 ---~~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~ 154 (396)
T 1fkm_A 80 ---HSRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI 154 (396)
T ss_dssp ---CSTHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG
T ss_pred ---CcccHHHHHHHHHHhhhhCCCcccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc
Confidence 1112245679999999999999999864 56899999999999999999999999999999998762
Q ss_pred ---------c----------cchhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhH
Q 018436 179 ---------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCF 239 (356)
Q Consensus 179 ---------~----------E~~af~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~ 239 (356)
+ |++|||||+++|+++.++|..+++++...+..++.+++.++|+|++||++.|+.+.+|++
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~ 234 (396)
T 1fkm_A 155 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAF 234 (396)
T ss_dssp GGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHH
T ss_pred ccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 1 899999999999998888999899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHhcc---------------------------------------------------c-
Q 018436 240 RWVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L- 267 (356)
Q Consensus 240 ~W~~tlF~~~l~~~~~~riwD~~l~~~---------------------------------------------------~- 267 (356)
+||+|+|++++|++.++||||.+|++| .
T Consensus 235 rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 314 (396)
T 1fkm_A 235 RWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVE 314 (396)
T ss_dssp HHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999988 1
Q ss_pred --------c-hhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHhCCCC
Q 018436 268 --------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 328 (356)
Q Consensus 268 --------~-~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~----~d~~~ll~~A~~l~~~~~~~~ 328 (356)
+ ..+++++|+|+|...++.|++ +|+++++++|+++|.. .|++.++..|..++...++..
T Consensus 315 ~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 315 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp --------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred cchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence 1 378999999999999999995 4999999999999953 489999999999998887654
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=8.3e-51 Score=379.32 Aligned_cols=271 Identities=20% Similarity=0.388 Sum_probs=233.9
Q ss_pred CHHHHHhccccCCC---CCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCC
Q 018436 28 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 104 (356)
Q Consensus 28 ~~~~W~~~l~~~~~---~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~ 104 (356)
+.++|+++++++++ ..+.+++++.+ ++|||+.+|+.||+.++|+.+...+..+ ........|..+.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 56789999988766 56789999855 7999999999999999997441111000 00123456777765432
Q ss_pred hHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhH
Q 018436 105 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 184 (356)
Q Consensus 105 ~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af 184 (356)
...++|++|++||+|++++|..+.+.+++.|+|||.+|+.+||++|||||||+||++|++++ +|++||
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 12359999999999999999988888899999999999999999999999999999999998 699999
Q ss_pred HHHHHHHHhc--CCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHH
Q 018436 185 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 262 (356)
Q Consensus 185 ~~~~~l~~~~--~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~ 262 (356)
|||+.+|+.. ...|.++..++...+..++.+++.++|+||+||.+.|+.+..|+.+||+|+|++++|++.++||||.+
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 9999999874 45788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCC---CHHHHHHHHHHH
Q 018436 263 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI---DLDAILRDAEAL 320 (356)
Q Consensus 263 l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~---d~~~ll~~A~~l 320 (356)
+++|. .+++++|+|++..+++.|++++ |++++++++++.+.++ |++.+++.|..+
T Consensus 250 l~~g~--~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 250 FLQGT--EVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHCT--THHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHCCc--HHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 99874 6999999999999999999876 9999999999855455 788899999776
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.3e-51 Score=377.79 Aligned_cols=261 Identities=24% Similarity=0.420 Sum_probs=228.6
Q ss_pred HHHHHhccccCCCCC--CHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChH
Q 018436 29 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 106 (356)
Q Consensus 29 ~~~W~~~l~~~~~~~--~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 106 (356)
-++|.+++++++... +.+++++.+ ++|||+.+|+.+|+.++|+.+. ......|..+.++..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 368999998876654 568899854 7999999999999999998652 122356766654311
Q ss_pred HHHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhHHH
Q 018436 107 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 186 (356)
Q Consensus 107 ~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af~~ 186 (356)
+..++|++|++||+|++++|..+.+.+++.|+|||.+|+.+||++|||||||+|||+|++++ +|++||||
T Consensus 68 ---------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 68 ---------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp ---------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred ---------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 12359999999999999999988878899999999999999999999999999999999999 69999999
Q ss_pred HHHHHHh--cCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHh
Q 018436 187 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 264 (356)
Q Consensus 187 ~~~l~~~--~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~ 264 (356)
|+++|++ ....|.++.+++...+..++.+++.++|+||+||.+.|+.+..|+.+||+|+|++++|++.++||||.+++
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999987 44567777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHh-ccCCC----CCHHHHHHHHHHH
Q 018436 265 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN-ELSGR----IDLDAILRDAEAL 320 (356)
Q Consensus 265 ~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~-~~~~~----~d~~~ll~~A~~l 320 (356)
+|. .+++++|+|++...++.|+++ |+++++++++ ++|.. .|++.+++.|..+
T Consensus 218 ~g~--~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 218 EGL--NIIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HCT--THHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred CCc--HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 874 789999999999999999975 9999999997 56633 5899999999888
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=4.6e-49 Score=360.93 Aligned_cols=266 Identities=18% Similarity=0.256 Sum_probs=225.1
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHhcC-C-CCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChH
Q 018436 29 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 106 (356)
Q Consensus 29 ~~~W~~~l~~~~~~~~~~~l~~~~~~~-G-iP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 106 (356)
.++++..+. +...|.++||+.+..+ | +|+++|+.||+.++|+.+...+. .|....
T Consensus 20 ~~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~--------- 76 (292)
T 4hl4_A 20 VAEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNL--------- 76 (292)
T ss_dssp HHHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTH---------
T ss_pred HHHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhh---------
Confidence 345666664 3568899999976553 3 78999999999999998765431 111000
Q ss_pred HHHhhhHHHHhhchhhhcccccCCCCcccCCC--CCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhccchhH
Q 018436 107 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 184 (356)
Q Consensus 107 ~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~E~~af 184 (356)
....+..+||++||+||+|+++.|..+ .+.+++.|+|||.+|+.+||++|||||||+||++||+++ +|++||
T Consensus 77 -----~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF 150 (292)
T 4hl4_A 77 -----RQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLAT 150 (292)
T ss_dssp -----HHHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHH
T ss_pred -----cccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHH
Confidence 011134579999999999999888642 234678999999999999999999999999999999988 699999
Q ss_pred HHHHHHHHhcCC-CCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCC-hHHHHHHHHHH
Q 018436 185 WCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVL 262 (356)
Q Consensus 185 ~~~~~l~~~~~~-~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~-~~~~~riwD~~ 262 (356)
|||+++++...+ .|.++..++...+..++.+++.++|+|++||++.++. .+|+.+||+|+|++++| ++.++||||.+
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~ 229 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFF 229 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 999999997554 5677788888899999999999999999999999994 68999999999999996 99999999999
Q ss_pred HhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCC
Q 018436 263 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 326 (356)
Q Consensus 263 l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~~~ 326 (356)
+++|+ .+++++|+|++...+++|++++.|+++++.+++++|.++|++.+++.|..++.+.|+
T Consensus 230 l~~g~--~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 230 LACHP--LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp HHSCT--THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred HHcCC--cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 99874 799999999999999999998668999999999999999999999999999998886
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=291.95 Aligned_cols=252 Identities=15% Similarity=0.217 Sum_probs=209.6
Q ss_pred HHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHHHH
Q 018436 30 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 109 (356)
Q Consensus 30 ~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 109 (356)
+..+.+++ +..+|.++||+.++++|||+.+|+.+|+.|+|+.|.+++. |..+..+++++|.+++++.
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~--------- 93 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHAL--------- 93 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhh---------
Confidence 34556664 4789999999977555599999999999999999988765 5788899999999999862
Q ss_pred hhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcc----------cCCCCcccchhHHHHHHHHHhhc
Q 018436 110 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFY----------NFDLGYCQGMSDLLSPILFVMED 179 (356)
Q Consensus 110 ~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~----------~p~igY~QGm~~i~~~ll~~~~~ 179 (356)
+..++|+.+.++. ...+..|... +++ .++|||..||++++.++.+
T Consensus 94 ------~~~r~I~~~tP~~------------------~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~ 148 (294)
T 3qwl_A 94 ------KVVRFVSDATPQA------------------EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVED 148 (294)
T ss_dssp ------HHTTSCCTTSCHH------------------HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCS
T ss_pred ------hhhhhhhccCchH------------------HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCC
Confidence 2234666544321 1122222211 222 2569999999999999989
Q ss_pred cchhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHH
Q 018436 180 ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 259 (356)
Q Consensus 180 E~~af~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riw 259 (356)
|++|||||+++|+++.++|..+++|++.. ++.+++.++|+|++||++.|+.+.+++.+||+|+|++++|++.++|||
T Consensus 149 E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlW 225 (294)
T 3qwl_A 149 SVDCYWITRRFVNQLNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVW 225 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999999999999888999999998875 489999999999999999999888777799999999999999999999
Q ss_pred HHHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCC
Q 018436 260 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 326 (356)
Q Consensus 260 D~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~~~ 326 (356)
|.++++| ..+++++|+|+|+.+++.|++.+ +.++++++|+++| ..|++.++..|..++.+...
T Consensus 226 D~~~~~~--~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 226 DKVVSGS--CKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp HHHHTTC--STHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCC
Confidence 9999865 58999999999999999999875 5699999999999 67899999999999887644
No 8
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=18.93 E-value=63 Score=22.25 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.2
Q ss_pred cCCCCCchHHHHHHHhhCC
Q 018436 54 YGGVDHKLRREVWAFLLGY 72 (356)
Q Consensus 54 ~~GiP~~~R~~vW~~llg~ 72 (356)
.-.||...|..+|+-+...
T Consensus 46 ~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 46 ALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp HTTCCTTTHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHhhHHHh
Confidence 3479999999999999865
No 9
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=15.64 E-value=46 Score=22.77 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=9.2
Q ss_pred CCcccchhHHHH
Q 018436 160 LGYCQGMSDLLS 171 (356)
Q Consensus 160 igY~QGm~~i~~ 171 (356)
--|.|||.++++
T Consensus 16 nlyfqgM~~~a~ 27 (96)
T 2js3_A 16 NLYFQGMTDTAA 27 (96)
T ss_dssp CBTTBSTTTHHH
T ss_pred ceeeccccccCH
Confidence 359999998654
No 10
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=13.42 E-value=1.8e+02 Score=15.75 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 018436 338 PSLPIDNGLLYSQQEDE 354 (356)
Q Consensus 338 ~~~~~~~~~~~~~~~~~ 354 (356)
.++..+-..-|+|++|+
T Consensus 19 ssissseendfwqpkpt 35 (35)
T 2lic_A 19 SSISSSEENDFWQPKPT 35 (35)
T ss_dssp SCCSTTCSCSSCCCCCC
T ss_pred ccccccccccccCCCCC
Confidence 33444456778898875
Done!