BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018437
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 599 bits (1544), Expect = e-172, Method: Compositional matrix adjust.
Identities = 276/338 (81%), Positives = 306/338 (90%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
MV+S ++S + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGH YGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/349 (47%), Positives = 225/349 (64%), Gaps = 2/349 (0%)
Query: 8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
TD R E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F T
Sbjct: 7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
W + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GS
Sbjct: 67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
SEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
M+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
LG TF +NFS+ + Q+IAQYY+F+RLG E T +S +V +L
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 337 bits (865), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 166/349 (47%), Positives = 225/349 (64%), Gaps = 2/349 (0%)
Query: 8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
TD R E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F T
Sbjct: 7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
W + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GS
Sbjct: 67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
SEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
M+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
LG TF +NFS+ + Q+IAQYY+F+RLG E T +S +V +L
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 354
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 333 bits (853), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/340 (47%), Positives = 219/340 (64%), Gaps = 1/340 (0%)
Query: 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL
Sbjct: 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76 VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+
Sbjct: 62 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKA 195
A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G M+P +
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
+E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG TF
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFEEITFTFISSLKVCPFLV 355
+NFS+ + Q+IAQYY+F+RLG E T +S +V +L
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLA 340
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 93/243 (38%), Gaps = 27/243 (11%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
P +DFRL V S++ HKYG G +++R D D P L F +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGS 309
GS
Sbjct: 352 AGS 354
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 19/259 (7%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
N + D +P ++++ V+M+ +FN P T G T G +E+++LA L+ K
Sbjct: 95 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
R +P I+ ++K A YF Y ++ K + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
T+ + + G +D++ L + K + P+HVD+ G FI F+ Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
L DFR+P V SI+ HKYG G +++R D + + + G + TL
Sbjct: 261 LPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLG 336
S+ + ++ + + +G
Sbjct: 321 GSRPGAIVVGCWATMVNMG 339
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 93/243 (38%), Gaps = 27/243 (11%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
P +DFRL V S++ HKYG G +++R D D P L F +
Sbjct: 296 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 307 LGS 309
GS
Sbjct: 356 AGS 358
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 19/259 (7%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
N + D +P ++++ V+M+ +FN P T G T G +E+++LA L+ K
Sbjct: 95 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
R +P I+ ++K A YF Y ++ K + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
T+ + + G +D++ L + K + P+HVD+ G FI F+ Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
L DFR+P V SI+ H YG G +++R D + + + G + TL
Sbjct: 261 LPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLG 336
S+ + ++ + + +G
Sbjct: 321 GSRPGAIVVGCWATMVNMG 339
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
P +DFRL V S++ H YG G +++R D D P L F +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGS 309
GS
Sbjct: 352 AGS 354
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
P +DFRL V S++ H YG G +++R D D P L F +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGS 309
GS
Sbjct: 352 AGS 354
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
P +DFRL V S++ H YG G +++R D D P L F +
Sbjct: 296 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 307 LGS 309
GS
Sbjct: 356 AGS 358
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 47/263 (17%)
Query: 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
P K+V + N D + T L+ + V ++ L N +K A G G +EA
Sbjct: 44 PITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-----NKDAYGHIVSGGTEA 98
Query: 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYV 189
+ A K W++KR++ + P I+ +EK Y+
Sbjct: 99 NLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLE----------YI 148
Query: 190 MNPVKAVELVDENTI----------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
P+K +DE + + I G+T G ++++ L + + N
Sbjct: 149 YAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENN------I 202
Query: 240 PIHVDAASGGFIAPFLYP-------DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292
IHVDAA GG + PFL + ++DF L V SI + HK G G ++++
Sbjct: 203 YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLG-VDSITIDPHKXGHCPIPSGGILFKD 261
Query: 293 KDDLPDELVFHINYLGSDQPTFT 315
+ + YL D P T
Sbjct: 262 --------IGYKRYLDVDAPYLT 276
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256
+LVDE+T V+ + + G + V+ + ++ KKN+E T +HVDA PF
Sbjct: 134 KLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKE----TLVHVDAVQTIGKIPFSL 189
Query: 257 PDLEWDF 263
LE D+
Sbjct: 190 EKLEVDY 196
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256
+LVDE+T V+ + G + V+ + ++ KKN+E T +HVDA PF
Sbjct: 134 KLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKE----TLVHVDAVQTIGKIPFSL 189
Query: 257 PDLEWDF 263
LE D+
Sbjct: 190 EKLEVDY 196
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYY 330
V W T+ DL D+ V +IN LGS D T G I AQ +
Sbjct: 106 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTF 150
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYY 330
V W T+ DL D+ V +IN LGS D T G I AQ +
Sbjct: 110 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTF 154
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYY 330
V W T+ DL D+ V +IN LGS D T G I AQ +
Sbjct: 110 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTF 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,510,411
Number of Sequences: 62578
Number of extensions: 438888
Number of successful extensions: 915
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 18
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)