BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018439
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194
I S C +L+ S+ +R++D + L KN +++ LNLSGC + +LQ + + L
Sbjct: 113 ILSQCSKLQNLSLE-GLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRL 170
Query: 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK-----ISLLAHLKFLD 249
+ LNL+ C T+ +Q + S ++ LSG+ K + +L LD
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 250 LCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTD 309
L + L ++ + L L+L+ C I ++ + E +L+ L +FGI V D
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPD 285
Query: 310 KCLEVL 315
L++L
Sbjct: 286 GTLQLL 291
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 254 QNLSDEGLA-------CIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVG 306
QNLS EGL +AK NLV LNL+ C ++ + + CS L+ L+L
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180
Query: 307 VTDKCLEVLSRFCSNTLTTLDVNG 330
T+K ++V S T+T L+++G
Sbjct: 181 FTEKHVQVAVAHVSETITQLNLSG 204
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKH-IIDLNL 173
+L LNL+GC S+ ++ + S+C L ++ W T+ +Q V + I LNL
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 174 SGC-KNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFT 232
SG KNL L + L L+L+ V L + Q+ + + L+ L+L
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDII 261
Query: 233 DEAYKKISLLAHLKFLDLCG 252
E ++ + LK L + G
Sbjct: 262 PETLLELGEIPTLKTLQVFG 281
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 135 ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194
I S C +L+ S+ +R++D + L KN +++ LNLSGC + +LQ + + L
Sbjct: 75 ILSQCSKLQNLSLE-GLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRL 132
Query: 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK-----ISLLAHLKFLD 249
+ LNL+ C T+ +Q + S ++ LSG+ K + +L LD
Sbjct: 133 DELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 190
Query: 250 LCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTD 309
L + L ++ + L L+L+ C I ++ + E +L+ L +FGI V D
Sbjct: 191 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPD 247
Query: 310 KCLEVL 315
L++L
Sbjct: 248 GTLQLL 253
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 254 QNLSDEGLA-------CIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVG 306
QNLS EGL +AK NLV LNL+ C ++ + + CS L+ L+L
Sbjct: 83 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 142
Query: 307 VTDKCLEVLSRFCSNTLTTLDVNG 330
T+K ++V S T+T L+++G
Sbjct: 143 FTEKHVQVAVAHVSETITQLNLSG 166
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKH-IIDLNL 173
+L LNL+GC S+ ++ + S+C L ++ W T+ +Q V + I LNL
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
Query: 174 SGC-KNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFT 232
SG KNL L + L L+L+ V L + Q+ + + L+ L+L
Sbjct: 165 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDII 223
Query: 233 DEAYKKISLLAHLKFLDLCG 252
E ++ + LK L + G
Sbjct: 224 PETLLELGEIPTLKTLQVFG 243
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 49/241 (20%)
Query: 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 139
P +R+++L +A + H L++ KC +L+ LE+ N+ I D+G+E+++ C
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQ-KC-PNLEVLETRNV-----IGDRGLEVLAQYC 341
Query: 140 PELKVFSIYWNVR----------VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189
+LK I V+ G+ L + C+ + + + ++ ++SL+ I
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGT 400
Query: 190 NYQELESLNLT---RCVKLTD----GGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242
+ L L R ++TD G++ +LI C LR Y G
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG------------ 448
Query: 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLF 302
L+D GL+ I + V L V +D G+M + GC +L+ L +
Sbjct: 449 ------------GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496
Query: 303 G 303
G
Sbjct: 497 G 497
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 103/260 (39%), Gaps = 57/260 (21%)
Query: 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPEL 142
Y + EI L+ + D LEL+ S ++ + L L+ C+ S G+ I++TC L
Sbjct: 104 YTWLEEIRLK-RMVVTDDCLELIAK----SFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158
Query: 143 KVFSIYWNVRVTDIG------IQHLVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELE 195
K ++R +D+ + H ++ LN+S + + S L+ + L+
Sbjct: 159 KEL----DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214
Query: 196 SLNLTRCVKL-----------------TDG-----------GLQKILIKCSSLRSLNLYA 227
SL L R V L T G GL L C LR
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR-----C 269
Query: 228 LSGFTD--EAY--KKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV-RIT 282
LSGF D AY S+ + L L+L A S + + + +C L L W + I
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL---WVLDYIE 326
Query: 283 DVGVMAIAEGCSSLEFLSLF 302
D G+ +A C L L +F
Sbjct: 327 DAGLEVLASTCKDLRELRVF 346
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 127 ISDKGIEIISSTCP---ELKVFS-----IYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKN 178
I D G+E+++STC EL+VF + NV +T+ G+ + C + + L C+
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQ 383
Query: 179 LLDKSLQLIADNYQELESLNL 199
+ + +L IA N + L
Sbjct: 384 MTNAALITIARNRPNMTRFRL 404
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 47 WLHRTLVSYPSL--------WLVIDLREMNNA---------GNRLVAALSIPRYRHVREI 89
WL+RTL S+P+ + +D+ EM A GN + LS+ R + +I
Sbjct: 560 WLNRTLASWPNPEQTLPTLEYEALDVNEMEIAPGYRGYGAKGNYIENPLSVKRQEEIDKI 619
Query: 90 NLEFAQDIEDRH 101
E +DRH
Sbjct: 620 QSELEAAGKDRH 631
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 47 WLHRTLVSYPSL--------WLVIDLREMNNA---------GNRLVAALSIPRYRHVREI 89
WL+RTL S+P+ + +D+ EM A GN + LS+ R + +I
Sbjct: 560 WLNRTLASWPNPEQTLPTLEYEALDVNEMEIAPRYRGYGAKGNYIENPLSVKRQEEIDKI 619
Query: 90 NLEFAQDIEDRH 101
E +DRH
Sbjct: 620 QSELEAAGKDRH 631
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 47 WLHRTLVSYPSL--------WLVIDLREMNNA---------GNRLVAALSIPRYRHVREI 89
WL+RTL S+P+ + +D+ EM A GN + LS+ R + +I
Sbjct: 560 WLNRTLASWPNPEQTLPTLEYEALDVNEMEIAPGYRGYGAKGNYIENPLSVKRQEEIDKI 619
Query: 90 NLEFAQDIEDRH 101
E +DRH
Sbjct: 620 QSELEAAGKDRH 631
>pdb|2RCK|A Chain A, Crystal Structure Of Juvenile Hormone Binding Protein From
Galleria Mellonella Hemolymph
pdb|2RCK|B Chain B, Crystal Structure Of Juvenile Hormone Binding Protein From
Galleria Mellonella Hemolymph
Length = 225
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 180 LDKSLQLIADN-YQELESLNLTRCVKLTDGGLQKILIKCS-SLRSLNLYALSGFTDEAYK 237
+ K+ Q+ DN YQ + N+ + +T L+K + K + ++R NL ++GF ++
Sbjct: 18 ISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEKSIEKINLNVRYNNL-KVTGFKNQKIS 76
Query: 238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297
+L+ K ++ N + EG K ++ L + +V + A AEG ++
Sbjct: 77 HFTLVRDTKAVNFKTKVNFTAEG-------KLVIELPKSSKTYTGEVTIEASAEGGAAYS 129
Query: 298 F 298
+
Sbjct: 130 Y 130
>pdb|1N00|A Chain A, Annexin Gh1 From Cotton
Length = 321
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 184 LQLIADNYQELESLNLTRC-VKLTDGGLQKILI 215
L++IAD YQ S+ LTR VK T G +K+L+
Sbjct: 281 LKVIADEYQRRNSVPLTRAIVKDTHGDYEKLLL 313
>pdb|3BRX|A Chain A, Crystal Structure Of Calcium-Bound Cotton Annexin Gh1
Length = 317
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 184 LQLIADNYQELESLNLTRC-VKLTDGGLQKILI 215
L++IAD YQ S+ LTR VK T G +K+L+
Sbjct: 277 LKVIADEYQRRNSVPLTRAIVKDTHGDYEKLLL 309
>pdb|4IFQ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nup192,
Residues 2 To 960 [scnup192(2-960)]
Length = 970
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 139 CPELKVFS------IYWNV-RVTDIGIQHLVKNCKHIIDLNLSGCKN---LLDKSLQLIA 188
CP + +F+ IY ++ V D+G+ L + L G KN LL ++++I
Sbjct: 824 CPAIPIFNYIFTEKIYKSIFNVVDVGVDQL--------SIELEGGKNQAELLQLAVKIIN 875
Query: 189 D--NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK 246
+YQE L VK G L K SL + L F D + I L+AHL
Sbjct: 876 KVLDYQETYVEELFPIVK-KHGKTDYFLPKNYSL-----HGLRSFYDAIFFNIPLVAHLG 929
Query: 247 FLDLCGAQNLSDEGLACIAK 266
Q L+ L +AK
Sbjct: 930 LYVGVDDQILATNSLRILAK 949
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,128,799
Number of Sequences: 62578
Number of extensions: 347871
Number of successful extensions: 832
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 20
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)