Query 018439
Match_columns 356
No_of_seqs 229 out of 3108
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 09:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-35 4.4E-40 242.1 12.8 296 13-315 69-393 (483)
2 KOG2120 SCF ubiquitin ligase, 100.0 2.1E-28 4.6E-33 192.7 12.9 296 13-352 94-392 (419)
3 KOG4341 F-box protein containi 99.9 4.5E-25 9.7E-30 181.7 9.7 290 58-354 139-459 (483)
4 cd00116 LRR_RI Leucine-rich re 99.7 8E-15 1.7E-19 126.2 25.5 260 83-354 22-314 (319)
5 KOG2120 SCF ubiquitin ligase, 99.7 8.9E-17 1.9E-21 127.6 8.6 205 84-298 185-391 (419)
6 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-14 1.5E-18 120.4 24.7 233 114-355 23-286 (319)
7 KOG1947 Leucine rich repeat pr 99.6 4.1E-15 8.9E-20 135.5 12.8 255 83-344 187-450 (482)
8 PLN00113 leucine-rich repeat r 99.6 7.5E-15 1.6E-19 144.5 10.3 252 81-355 90-364 (968)
9 KOG1947 Leucine rich repeat pr 99.5 5.2E-14 1.1E-18 128.3 12.7 238 113-353 187-433 (482)
10 PLN00113 leucine-rich repeat r 99.5 1E-13 2.2E-18 136.6 11.7 204 137-355 185-388 (968)
11 KOG1909 Ran GTPase-activating 99.4 7E-12 1.5E-16 102.2 14.7 257 82-347 28-325 (382)
12 KOG3207 Beta-tubulin folding c 99.4 1.3E-13 2.8E-18 115.4 1.8 187 113-304 120-311 (505)
13 KOG1909 Ran GTPase-activating 99.3 8.7E-11 1.9E-15 96.0 13.8 238 110-355 26-306 (382)
14 KOG4194 Membrane glycoprotein 99.3 6.1E-13 1.3E-17 115.4 0.2 201 140-355 173-400 (873)
15 KOG3207 Beta-tubulin folding c 99.3 1.3E-12 2.9E-17 109.4 2.1 213 81-304 118-336 (505)
16 KOG4194 Membrane glycoprotein 99.2 6.4E-13 1.4E-17 115.3 -3.3 154 191-355 268-424 (873)
17 PLN03210 Resistant to P. syrin 99.2 8.3E-11 1.8E-15 116.9 9.6 84 112-203 632-715 (1153)
18 PLN03210 Resistant to P. syrin 99.1 1.8E-10 3.9E-15 114.6 9.5 86 82-179 632-717 (1153)
19 PF12937 F-box-like: F-box-lik 99.1 5.3E-11 1.2E-15 70.1 2.9 44 20-64 3-46 (47)
20 KOG3665 ZYG-1-like serine/thre 99.1 8.7E-10 1.9E-14 102.2 11.1 157 140-302 122-283 (699)
21 KOG3665 ZYG-1-like serine/thre 99.1 1.9E-09 4.2E-14 99.9 12.0 209 114-331 60-285 (699)
22 KOG0444 Cytoskeletal regulator 98.8 2.2E-10 4.7E-15 100.9 -3.1 203 112-331 76-278 (1255)
23 KOG0444 Cytoskeletal regulator 98.8 3.2E-10 7E-15 99.9 -3.6 269 58-355 8-276 (1255)
24 KOG2982 Uncharacterized conser 98.7 4.4E-09 9.4E-14 84.5 2.0 63 242-305 198-260 (418)
25 KOG3864 Uncharacterized conser 98.7 2.6E-08 5.6E-13 75.6 5.3 106 244-352 102-209 (221)
26 KOG0618 Serine/threonine phosp 98.6 4.7E-09 1E-13 96.4 -0.5 110 214-333 379-488 (1081)
27 PF14580 LRR_9: Leucine-rich r 98.5 5.5E-08 1.2E-12 74.3 2.5 16 263-278 108-123 (175)
28 smart00256 FBOX A Receptor for 98.5 1.7E-07 3.7E-12 53.4 3.2 38 22-60 2-39 (41)
29 KOG0618 Serine/threonine phosp 98.4 3.3E-08 7.2E-13 91.0 -0.5 126 218-355 359-484 (1081)
30 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-05 2.4E-10 64.5 13.1 37 84-122 30-66 (388)
31 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-05 2.4E-10 64.5 12.2 214 113-332 29-283 (388)
32 PF14580 LRR_9: Leucine-rich r 98.4 9.4E-08 2E-12 73.0 0.6 107 217-330 41-149 (175)
33 KOG2982 Uncharacterized conser 98.3 1.2E-06 2.6E-11 70.8 4.9 162 114-278 71-259 (418)
34 PF00646 F-box: F-box domain; 98.3 3.3E-07 7.2E-12 54.1 1.2 40 20-60 5-44 (48)
35 KOG3864 Uncharacterized conser 98.2 1.9E-06 4.1E-11 65.7 4.2 76 232-308 114-190 (221)
36 KOG1259 Nischarin, modulator o 98.1 6.3E-07 1.4E-11 72.5 0.3 57 242-304 306-362 (490)
37 PRK15387 E3 ubiquitin-protein 97.9 4.7E-06 1E-10 78.4 2.3 19 321-340 445-463 (788)
38 KOG4658 Apoptotic ATPase [Sign 97.9 4E-06 8.6E-11 80.5 1.7 108 137-251 568-676 (889)
39 KOG4237 Extracellular matrix p 97.9 9.4E-07 2E-11 74.1 -2.2 100 239-344 270-369 (498)
40 PRK15370 E3 ubiquitin-protein 97.9 1.4E-05 3.1E-10 75.5 4.6 32 268-304 346-377 (754)
41 KOG4658 Apoptotic ATPase [Sign 97.8 1.4E-05 3E-10 76.9 2.7 110 138-253 543-652 (889)
42 KOG1259 Nischarin, modulator o 97.8 7.1E-06 1.5E-10 66.6 0.6 126 165-305 283-410 (490)
43 PRK15387 E3 ubiquitin-protein 97.6 3E-05 6.4E-10 73.2 2.7 32 294-332 382-413 (788)
44 KOG1859 Leucine-rich repeat pr 97.6 1E-05 2.2E-10 73.4 -1.5 103 165-278 186-289 (1096)
45 KOG1859 Leucine-rich repeat pr 97.5 2.1E-05 4.5E-10 71.5 -0.6 195 114-332 84-290 (1096)
46 PF13855 LRR_8: Leucine rich r 97.4 2.6E-05 5.6E-10 48.7 -0.5 11 293-303 48-58 (61)
47 PRK15370 E3 ubiquitin-protein 97.4 0.00017 3.7E-09 68.3 4.0 54 268-332 325-378 (754)
48 KOG4237 Extracellular matrix p 97.3 7.4E-05 1.6E-09 63.1 1.1 133 114-254 67-199 (498)
49 PF13855 LRR_8: Leucine rich r 97.2 3.2E-05 7E-10 48.2 -1.7 59 218-278 1-59 (61)
50 PLN03150 hypothetical protein; 97.1 0.00086 1.9E-08 63.0 6.1 81 220-304 420-500 (623)
51 smart00367 LRR_CC Leucine-rich 97.1 0.00079 1.7E-08 33.5 2.9 22 294-315 2-23 (26)
52 KOG0617 Ras suppressor protein 97.0 5.8E-06 1.3E-10 61.4 -7.6 129 139-278 55-183 (264)
53 PLN03150 hypothetical protein; 97.0 0.0018 3.9E-08 60.9 6.7 106 194-304 420-525 (623)
54 KOG0617 Ras suppressor protein 97.0 5.7E-06 1.2E-10 61.5 -7.8 151 140-304 33-183 (264)
55 smart00367 LRR_CC Leucine-rich 96.8 0.0021 4.5E-08 32.0 3.0 24 267-290 1-24 (26)
56 KOG2739 Leucine-rich acidic nu 96.7 0.00019 4.2E-09 57.3 -1.6 36 166-201 65-100 (260)
57 KOG2739 Leucine-rich acidic nu 96.7 0.00037 8E-09 55.7 -0.3 85 217-305 42-127 (260)
58 PRK15386 type III secretion pr 96.5 0.0028 6.1E-08 55.2 3.6 166 137-339 49-218 (426)
59 KOG4308 LRR-containing protein 96.4 0.0013 2.7E-08 59.2 1.3 192 116-315 89-310 (478)
60 KOG0472 Leucine-rich repeat pr 96.3 0.0022 4.8E-08 54.7 1.8 113 184-305 427-539 (565)
61 KOG2123 Uncharacterized conser 96.1 0.0018 3.9E-08 52.5 0.6 103 217-327 18-123 (388)
62 KOG2123 Uncharacterized conser 96.1 0.0016 3.6E-08 52.7 0.1 100 167-274 20-123 (388)
63 KOG4308 LRR-containing protein 96.0 0.0037 8E-08 56.3 2.1 210 86-304 89-328 (478)
64 KOG1644 U2-associated snRNP A' 96.0 0.0021 4.6E-08 49.5 0.4 105 166-277 42-149 (233)
65 PF12799 LRR_4: Leucine Rich r 95.9 0.013 2.7E-07 33.5 3.4 33 244-278 2-34 (44)
66 COG4886 Leucine-rich repeat (L 95.9 0.0066 1.4E-07 54.0 3.1 171 114-304 116-287 (394)
67 PRK15386 type III secretion pr 95.7 0.018 3.9E-07 50.4 4.8 137 163-331 49-187 (426)
68 KOG0281 Beta-TrCP (transducin 95.7 0.0046 9.9E-08 51.3 1.1 43 23-66 84-126 (499)
69 PLN03215 ascorbic acid mannose 95.3 0.015 3.2E-07 50.1 3.1 38 16-54 3-41 (373)
70 KOG2997 F-box protein FBX9 [Ge 95.3 0.0098 2.1E-07 49.0 1.8 44 20-64 108-157 (366)
71 COG4886 Leucine-rich repeat (L 95.2 0.021 4.5E-07 50.8 3.7 147 115-278 141-287 (394)
72 KOG0472 Leucine-rich repeat pr 94.8 0.015 3.3E-07 49.9 1.5 113 210-333 427-540 (565)
73 PF12799 LRR_4: Leucine Rich r 94.6 0.047 1E-06 31.1 2.9 15 239-253 20-34 (44)
74 KOG1644 U2-associated snRNP A' 94.4 0.02 4.3E-07 44.3 1.4 106 193-303 43-149 (233)
75 PF13516 LRR_6: Leucine Rich r 94.2 0.049 1.1E-06 26.3 2.1 19 295-314 3-21 (24)
76 PF13516 LRR_6: Leucine Rich r 93.5 0.07 1.5E-06 25.7 1.9 19 244-263 3-21 (24)
77 KOG4579 Leucine-rich repeat (L 91.6 0.077 1.7E-06 38.6 0.8 61 215-278 50-110 (177)
78 KOG3763 mRNA export factor TAP 91.3 0.37 8E-06 43.4 4.8 37 241-277 216-253 (585)
79 KOG4579 Leucine-rich repeat (L 88.9 0.2 4.4E-06 36.5 1.1 104 167-277 28-132 (177)
80 smart00368 LRR_RI Leucine rich 88.7 0.88 1.9E-05 22.9 3.1 8 270-277 4-11 (28)
81 KOG3763 mRNA export factor TAP 88.3 0.98 2.1E-05 40.9 5.0 87 110-198 214-307 (585)
82 KOG0274 Cdc4 and related F-box 87.3 0.25 5.5E-06 45.5 1.0 47 15-62 105-152 (537)
83 KOG0531 Protein phosphatase 1, 86.6 0.3 6.5E-06 43.8 1.0 103 164-278 93-196 (414)
84 KOG0531 Protein phosphatase 1, 86.5 0.27 5.9E-06 44.1 0.7 107 137-256 92-199 (414)
85 PF07723 LRR_2: Leucine Rich R 77.5 1.8 3.9E-05 21.3 1.4 25 323-347 2-26 (26)
86 PF13504 LRR_7: Leucine rich r 76.6 1.8 4E-05 18.7 1.1 11 322-332 2-12 (17)
87 KOG0532 Leucine-rich repeat (L 72.3 0.54 1.2E-05 42.7 -2.1 128 164-306 119-246 (722)
88 PF12586 DUF3760: Protein of u 70.1 2.1 4.6E-05 24.5 0.7 39 24-64 7-45 (46)
89 PF13013 F-box-like_2: F-box-l 66.4 7 0.00015 27.4 2.8 27 20-46 24-50 (109)
90 PF09372 PRANC: PRANC domain; 58.5 8.6 0.00019 26.3 2.1 26 15-41 70-95 (97)
91 PF00560 LRR_1: Leucine Rich R 55.7 7.3 0.00016 18.0 1.0 13 322-335 1-13 (22)
92 PF13306 LRR_5: Leucine rich r 40.5 10 0.00022 27.2 0.2 10 165-174 11-20 (129)
93 KOG3735 Tropomodulin and leiom 38.7 1E+02 0.0022 26.6 5.7 30 183-212 189-218 (353)
94 smart00370 LRR Leucine-rich re 34.3 37 0.0008 16.2 1.6 7 270-276 4-10 (26)
95 smart00369 LRR_TYP Leucine-ric 34.3 37 0.0008 16.2 1.6 7 270-276 4-10 (26)
96 KOG3735 Tropomodulin and leiom 32.7 1.6E+02 0.0035 25.5 5.9 24 191-215 254-277 (353)
97 smart00446 LRRcap occurring C- 27.0 56 0.0012 16.1 1.5 13 136-148 9-21 (26)
98 KOG3926 F-box proteins [Amino 24.7 31 0.00068 28.5 0.6 40 22-62 205-246 (332)
99 PF03382 DUF285: Mycoplasma pr 24.5 49 0.0011 23.6 1.5 8 163-170 58-65 (120)
100 PF07735 FBA_2: F-box associat 24.4 1.8E+02 0.004 18.0 5.8 9 346-354 61-69 (70)
101 KOG0532 Leucine-rich repeat (L 22.4 14 0.00031 34.2 -1.9 126 141-278 144-270 (722)
102 smart00365 LRR_SD22 Leucine-ri 21.3 1E+02 0.0022 15.1 1.8 10 244-253 3-12 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2e-35 Score=242.10 Aligned_cols=296 Identities=25% Similarity=0.409 Sum_probs=194.8
Q ss_pred hccccccCCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEeccccccch-hhhHHHhhcCcccCCccEeec
Q 018439 13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNA-GNRLVAALSIPRYRHVREINL 91 (356)
Q Consensus 13 ~~~~~~~~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~~~~~-~~~~~~~l~~~~~~~l~~l~l 91 (356)
....| .+|||++.+||++|+.+.+.+++++|+.|+.. +.+...|+++++...... ...++..+.......++++.+
T Consensus 69 ~~~~~--~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~-AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSl 145 (483)
T KOG4341|consen 69 NSISR--SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL-ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSL 145 (483)
T ss_pred ccccc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhccccceeeehhcchhcCCCcceehHhhhhccccccccc
Confidence 45567 88999999999999999999999999999976 789999999988765543 233333333333345666666
Q ss_pred CCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEE
Q 018439 92 EFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDL 171 (356)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 171 (356)
+++..+.+..+..+...| |++++|.+.+|..+++..+..+...|++|++|.+..|..+++..+..+...|++|++|
T Consensus 146 rG~r~v~~sslrt~~~~C----pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~l 221 (483)
T KOG4341|consen 146 RGCRAVGDSSLRTFASNC----PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYL 221 (483)
T ss_pred cccccCCcchhhHHhhhC----CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHh
Confidence 666666666666665544 6666666666666666666666666666666666665566666666666666666666
Q ss_pred eccCCCCCCHHHHH--------------------------HHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEc
Q 018439 172 NLSGCKNLLDKSLQ--------------------------LIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNL 225 (356)
Q Consensus 172 ~l~~~~~~~~~~~~--------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 225 (356)
+++.|+.++..+++ ....+++-+..+++..|..++++.+..+...+..|+.|..
T Consensus 222 NlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~ 301 (483)
T KOG4341|consen 222 NLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCY 301 (483)
T ss_pred hhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcc
Confidence 66555544443333 3333344444455555555666666666666677777777
Q ss_pred CCCCCCChHHHHHhc-cCCCCCEEecCCCCCCchHHHHHhhc-CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 018439 226 YALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFG 303 (356)
Q Consensus 226 ~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (356)
++|..+++.....++ ..++|+.+-+.+|..+++.++..+++ ++.|+.+++..|..+++..+..+..+||.|+.|.+++
T Consensus 302 s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 302 SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence 777666666666665 56777777777777777777766664 5667777666666666665666666666666666666
Q ss_pred CCCCCHHHHHHH
Q 018439 304 IVGVTDKCLEVL 315 (356)
Q Consensus 304 ~~~~~~~~~~~l 315 (356)
|..++++++..+
T Consensus 382 ce~itD~gi~~l 393 (483)
T KOG4341|consen 382 CELITDEGIRHL 393 (483)
T ss_pred hhhhhhhhhhhh
Confidence 666666655544
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-28 Score=192.72 Aligned_cols=296 Identities=26% Similarity=0.329 Sum_probs=167.5
Q ss_pred hccccccCCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEeccccccchhhhHHHhhcCcccCCccEeecC
Q 018439 13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLE 92 (356)
Q Consensus 13 ~~~~~~~~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~ 92 (356)
+...|. .+|+|++..||+.|+.+++++++.||+||+++ +++.++|..+|+.......+...+... +.+..+.+.
T Consensus 94 pgv~~~-slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~-~~de~lW~~lDl~~r~i~p~~l~~l~~----rgV~v~Rla 167 (419)
T KOG2120|consen 94 PGVSWD-SLPDEILLGIFSCLCKKELLKVSGVCKRFYRL-ASDESLWQTLDLTGRNIHPDVLGRLLS----RGVIVFRLA 167 (419)
T ss_pred CCCCcc-cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cccccceeeeccCCCccChhHHHHHHh----CCeEEEEcc
Confidence 345573 44448999999999999999999999999998 788999999999876654444333221 233344443
Q ss_pred CCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEe
Q 018439 93 FAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLN 172 (356)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 172 (356)
.. ...+..+... ....-..|++++++.. .++...+..+.+.|.+|+.|.+.+. .+++.....
T Consensus 168 r~-~~~~prlae~---~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~------------ 229 (419)
T KOG2120|consen 168 RS-FMDQPRLAEH---FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNT------------ 229 (419)
T ss_pred hh-hhcCchhhhh---hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHH------------
Confidence 21 1111111111 1111134555555553 4444444444455555555555544 444443333
Q ss_pred ccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc-cCCCCCEEecC
Q 018439 173 LSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLC 251 (356)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~ 251 (356)
+++ -.+|+.|++++|+.+++.++..++.+|..|..|+++-|....+.....+. -.++|+.|+++
T Consensus 230 --------------iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 230 --------------IAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred --------------Hhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 333 33444455544444444444444445555555555444333333222222 23455666666
Q ss_pred CCCC-CchHHHHHhh-cCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecC
Q 018439 252 GAQN-LSDEGLACIA-KCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVN 329 (356)
Q Consensus 252 ~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~ 329 (356)
|+.. +.+..+..+. +||+|.+||++.|..+++..+..+.. ++.|++|.++.|..+....+..+... |.|.+|++.
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~--psl~yLdv~ 371 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSK--PSLVYLDVF 371 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeeccC--cceEEEEec
Confidence 5532 2223334443 47777777777777777755555544 77777777777776666665555433 578888887
Q ss_pred CCCCccHHHHHHHHhhCCcceEe
Q 018439 330 GCVGIKQRSRDELLQLFPHLMCF 352 (356)
Q Consensus 330 ~c~~~~~~~~~~~~~~~p~L~~l 352 (356)
||- .+...+-+.+.+|+|++-
T Consensus 372 g~v--sdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 372 GCV--SDTTMELLKEMLSHLKIN 392 (419)
T ss_pred ccc--CchHHHHHHHhCcccccc
Confidence 763 455667777777776653
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=4.5e-25 Score=181.67 Aligned_cols=290 Identities=27% Similarity=0.488 Sum_probs=241.3
Q ss_pred cceEeccccccchhhhHHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHH
Q 018439 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (356)
Q Consensus 58 l~~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 137 (356)
..+.+.+.+.....+.....+. ..++++.+|.+.+|..+++..+..+.+.| ++|++|++..|..+++..+..++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHHH
Confidence 3466677766666555555443 56788888888888888888888888877 888888888888888888888888
Q ss_pred hCCCccEEEeecCCccCHHHHHHHHHhCC--------------------------cCcEEeccCCCCCCHHHHHHHHHhC
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCK--------------------------HIIDLNLSGCKNLLDKSLQLIADNY 191 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (356)
.||+|++|++++|+.+++.++..+..++. .+..+++..|+.+++..+..+...+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 88888888888887777655555444333 3445566677778888888888889
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc-cCCCCCEEecCCCCCCchHHHHHhh-cCCC
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIA-KCKN 269 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~ 269 (356)
..|+.|+.++|+.+++..+..+..++++|+.|.+..|..+++..+..++ ++++|+.+++..|..+.+..+..++ +|+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 9999999999999999999999999999999999999999999999887 7899999999999877777666665 4899
Q ss_pred CcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhC
Q 018439 270 LVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLF 346 (356)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 346 (356)
|+.+.++.|..++|+++..+.. ....|+.+.+.+|+.+++..++.+. .|+ +|+.+++.+|..++.+++..+..++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~-~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICR-NLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCc-ccceeeeechhhhhhhhhHHHHhhC
Confidence 9999999999999998887764 3567999999999999999888875 466 9999999999999999999999999
Q ss_pred CcceEeee
Q 018439 347 PHLMCFKV 354 (356)
Q Consensus 347 p~L~~l~l 354 (356)
|++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 99998754
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=8e-15 Score=126.17 Aligned_cols=260 Identities=26% Similarity=0.294 Sum_probs=170.8
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCC--HHHHH---HHHHhCCCccEEEeecCCccCH--
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKIS--DKGIE---IISSTCPELKVFSIYWNVRVTD-- 155 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~--~~~~~---~~~~~~~~L~~L~l~~~~~~~~-- 155 (356)
...++.+++.++. +++.....+... ....++++++++++.. +. ...+. .....+++|+.|+++++ .+..
T Consensus 22 l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~ 97 (319)
T cd00116 22 LLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDG 97 (319)
T ss_pred HhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhH
Confidence 4558899998874 655555555444 3456789999998763 33 22222 23345779999999987 4432
Q ss_pred -HHHHHHHHhCCcCcEEeccCCCCCCHHHHHHH---HHhC-CCCcEEecCCCCCCChH---HHHHHHhcCCCCcEEEcCC
Q 018439 156 -IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI---ADNY-QELESLNLTRCVKLTDG---GLQKILIKCSSLRSLNLYA 227 (356)
Q Consensus 156 -~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~ 227 (356)
..+..+... ++|++|+++++ .+++..+..+ ...+ ++|+.|++++| .++.. .+...+..+++|++|++.+
T Consensus 98 ~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 98 CGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 223333333 56999999986 4554444433 2345 88999999986 45532 2344456678899999988
Q ss_pred CCCCChHHHH----HhccCCCCCEEecCCCCCCchHHHHH----hhcCCCCcEEecCCCCCCCHHHHHHHHhcC----CC
Q 018439 228 LSGFTDEAYK----KISLLAHLKFLDLCGAQNLSDEGLAC----IAKCKNLVSLNLTWCVRITDVGVMAIAEGC----SS 295 (356)
Q Consensus 228 ~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~ 295 (356)
+ .+.+.... .+...++|++|++++| .+++.+... +..+++|++|++++| .+++.++..+...+ +.
T Consensus 175 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 175 N-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNIS 251 (319)
T ss_pred C-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCC
Confidence 5 45443333 3345679999999998 566555444 345788999999986 67777777766554 68
Q ss_pred CCEEEecCCCCCCHHHHHHHHHHcc--ccccEEecCCCCCccHHHH---HHHHhhC-CcceEeee
Q 018439 296 LEFLSLFGIVGVTDKCLEVLSRFCS--NTLTTLDVNGCVGIKQRSR---DELLQLF-PHLMCFKV 354 (356)
Q Consensus 296 L~~L~l~~~~~~~~~~~~~l~~~~~--~~L~~L~l~~c~~~~~~~~---~~~~~~~-p~L~~l~l 354 (356)
|++|++.+| .+++.+...+...++ ++|++++++++. ++++.. ......+ ++|+.+++
T Consensus 252 L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 252 LLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred ceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhccc
Confidence 999999987 687666665554332 489999999876 444433 3333445 67877765
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.9e-17 Score=127.59 Aligned_cols=205 Identities=21% Similarity=0.354 Sum_probs=164.6
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (356)
..+++++++.. .++...+..+.+.| .+|+.|.+.+. .+++.-...+ ..-.+|+.|+++.|.+++..++..++.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C----~kLk~lSlEg~-~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQC----SKLKNLSLEGL-RLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHH----Hhhhhcccccc-ccCcHHHHHH-hccccceeeccccccccchhHHHHHHH
Confidence 46888999875 47788888887777 89999999986 4555444444 445799999999999999999999999
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHh-CCCCcEEecCCC-CCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADN-YQELESLNLTRC-VKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (356)
+|..|.+|+++.|...++. +..+..+ .++|+.|+++++ .++....+..+...||+|.+|++++|..+.++.+..+.+
T Consensus 258 scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 9999999999998655544 4444443 589999999987 344555677788899999999999999999988888899
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (356)
++.|++|.++.|..+.+..+..+...|.|.+|++-+| ++|..+.-+...+|+|+.
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 9999999999998888887777888899999998875 556566666667787653
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=6.9e-14 Score=120.39 Aligned_cols=233 Identities=24% Similarity=0.236 Sum_probs=160.0
Q ss_pred CCccEEecCCCCCCCHHHHHH---HHHhCCCccEEEeecCCccC--HHHHH---HHHHhCCcCcEEeccCCCCCC--HHH
Q 018439 114 QDLESLNLNGCQKISDKGIEI---ISSTCPELKVFSIYWNVRVT--DIGIQ---HLVKNCKHIIDLNLSGCKNLL--DKS 183 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~---~l~~~~~~L~~L~l~~~~~~~--~~~ 183 (356)
.+|+.|+++++ .+++.+... .....++|+++++.++ .+. ...+. ..+..+++|+.|+++++.... ...
T Consensus 23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 77999999997 565554433 4456788999999877 444 23332 234457899999999864321 223
Q ss_pred HHHHHHhCCCCcEEecCCCCCCChHHHHH---HHhcC-CCCcEEEcCCCCCCChHH----HHHhccCCCCCEEecCCCCC
Q 018439 184 LQLIADNYQELESLNLTRCVKLTDGGLQK---ILIKC-SSLRSLNLYALSGFTDEA----YKKISLLAHLKFLDLCGAQN 255 (356)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~-~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~ 255 (356)
+..+... ++|++|+++++ .+++..+.. .+..+ ++|+.|++.+|. +.... ...+..+++|++|+++++ .
T Consensus 101 ~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n-~ 176 (319)
T cd00116 101 LESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN-G 176 (319)
T ss_pred HHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC-C
Confidence 3333344 66999999995 566444443 33455 899999999964 44222 233456789999999998 6
Q ss_pred CchHHHHHh----hcCCCCcEEecCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCCHHHHHHHHHHcc---ccccE
Q 018439 256 LSDEGLACI----AKCKNLVSLNLTWCVRITDVGVMAI---AEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS---NTLTT 325 (356)
Q Consensus 256 ~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~---~~L~~ 325 (356)
+++.++..+ ...++|++|++++| .+++.+...+ ...+++|++|++++| .+++.++..+...+. +.|++
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceE
Confidence 776555443 34679999999986 6666655443 345789999999997 688888877776542 49999
Q ss_pred EecCCCCCccHHHH---HHHHhhCCcceEeeec
Q 018439 326 LDVNGCVGIKQRSR---DELLQLFPHLMCFKVH 355 (356)
Q Consensus 326 L~l~~c~~~~~~~~---~~~~~~~p~L~~l~l~ 355 (356)
|++++|. +++... ......+++|+.++++
T Consensus 255 L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 255 LSLSCND-ITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred EEccCCC-CCcHHHHHHHHHHhcCCCccEEECC
Confidence 9999985 543333 3344456788888875
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.62 E-value=4.1e-15 Score=135.51 Aligned_cols=255 Identities=33% Similarity=0.494 Sum_probs=122.3
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCC-CCCCCHH--HHHHHHHhCCCccEEEeecCCccCHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDK--GIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (356)
++.++.+.+..+..+++..+..+...+ ++|++|++++ +...... ....+...|++|+.|++.++..+++.++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKC----PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhC----chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 345555555555444444444443333 5555555544 1111111 12223344555555555555445555555
Q ss_pred HHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCC---CChHHH
Q 018439 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSG---FTDEAY 236 (356)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~ 236 (356)
.+...|++|++|.+.+|..+++.++..+...+++|++|++++|..+++.++..+...|++|+.|.+..+.. +.+...
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 55555555555555555445555555555555555555555555555544555544555555544433221 222211
Q ss_pred HHhccCC--CCCEEecCCCCCCchHHHHHhhcCCCCc-EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHH
Q 018439 237 KKISLLA--HLKFLDLCGAQNLSDEGLACIAKCKNLV-SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLE 313 (356)
Q Consensus 237 ~~l~~~~--~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 313 (356)
..+.... .+..+.+.+++.+++..+...+ ..... .+.+.+|..++ ..+......+..++.|++..|..+++..+.
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchH
Confidence 1111111 2222222233222222222222 11111 23333333333 223322222333688899988888888888
Q ss_pred HHHHHccccccEEecCCCCCccHHHHHHHHh
Q 018439 314 VLSRFCSNTLTTLDVNGCVGIKQRSRDELLQ 344 (356)
Q Consensus 314 ~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 344 (356)
.....|. +++.+++.+|+.++......+..
T Consensus 421 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 421 CLADSCS-NLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred HHhhhhh-ccccCCccCcccccchhhhhhhc
Confidence 7765554 88999999998887666655444
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=7.5e-15 Score=144.55 Aligned_cols=252 Identities=21% Similarity=0.214 Sum_probs=107.5
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|+.|+++++. +.......+ +..+++|++|+++++. +.. .++ ...+++|++|+++++ .++.. +..
T Consensus 90 ~~l~~L~~L~Ls~n~-~~~~ip~~~----~~~l~~L~~L~Ls~n~-l~~-~~p--~~~l~~L~~L~Ls~n-~~~~~-~p~ 158 (968)
T PLN00113 90 FRLPYIQTINLSNNQ-LSGPIPDDI----FTTSSSLRYLNLSNNN-FTG-SIP--RGSIPNLETLDLSNN-MLSGE-IPN 158 (968)
T ss_pred hCCCCCCEEECCCCc-cCCcCChHH----hccCCCCCEEECcCCc-ccc-ccC--ccccCCCCEEECcCC-ccccc-CCh
Confidence 456778888887653 221111112 2244677777776652 211 000 023456666666655 33221 111
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCC-----------
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS----------- 229 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 229 (356)
.+..+++|++|+++++. +... ++.....+++|++|+++++ .+.. .++..+..+++|+.|++.++.
T Consensus 159 ~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNV-LVGK-IPNSLTNLTSLEFLTLASN-QLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred HHhcCCCCCEEECccCc-cccc-CChhhhhCcCCCeeeccCC-CCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 12345566666665532 2111 1111223555555555543 2211 112223344445555544421
Q ss_pred ------------CCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 230 ------------GFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 230 ------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
.+.......+..+++|++|+++++ .+.......+.++++|++|++++|. +... +......+++|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~ 311 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNS-LSGE-IPELVIQLQNLE 311 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCe-eccC-CChhHcCCCCCc
Confidence 122222223334444555555444 2222222333444555555555432 2211 111222355666
Q ss_pred EEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 298 FLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 298 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
.|++.++ .+++.....+.. . ++|+.|++++|.. .. .++.....+++|+.|+++
T Consensus 312 ~L~l~~n-~~~~~~~~~~~~-l-~~L~~L~L~~n~l-~~-~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 312 ILHLFSN-NFTGKIPVALTS-L-PRLQVLQLWSNKF-SG-EIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred EEECCCC-ccCCcCChhHhc-C-CCCCEEECcCCCC-cC-cCChHHhCCCCCcEEECC
Confidence 6666654 233222122221 2 3677777766642 21 123333456677777654
No 9
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.55 E-value=5.2e-14 Score=128.26 Aligned_cols=238 Identities=27% Similarity=0.427 Sum_probs=154.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeec-CCcc--CHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHH
Q 018439 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW-NVRV--TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (356)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 189 (356)
.+.|+.+.+.++..+.+..+..+...+++|+.|++++ +... .......+...+++|+.|++.++..+++.++..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4888888888887777777777778888888888876 2222 222233455667888888888876688888888888
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc-cCCCCCEEecCCC---CCCchHHHHHhh
Q 018439 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGA---QNLSDEGLACIA 265 (356)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~---~~~~~~~~~~l~ 265 (356)
.+++|++|.+.+|..+++.++..+...+++|++|++..|..+.+.....+. ++++|+.|.+... ..+++..+..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 888888888887766888888888888888888888888777666555543 5666666554443 234444444333
Q ss_pred cCC--CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHH
Q 018439 266 KCK--NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELL 343 (356)
Q Consensus 266 ~~~--~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 343 (356)
... .+..+.+.+|..+++..+.... .......+.+.+|+.++ .++......+. .++.|++..|..+++..+....
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~-~l~~L~l~~~~~~t~~~l~~~~ 423 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSD-SLRVLNLSDCRLVTDKGLRCLA 423 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCC-ccceEecccCccccccchHHHh
Confidence 322 3445555555555544444333 11111145555666665 55555544433 4899999999988877766655
Q ss_pred hhCCcceEee
Q 018439 344 QLFPHLMCFK 353 (356)
Q Consensus 344 ~~~p~L~~l~ 353 (356)
..+.+++.+.
T Consensus 424 ~~~~~~~~l~ 433 (482)
T KOG1947|consen 424 DSCSNLKDLD 433 (482)
T ss_pred hhhhccccCC
Confidence 4444444443
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=1e-13 Score=136.65 Aligned_cols=204 Identities=21% Similarity=0.143 Sum_probs=125.7
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhc
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (356)
..+++|++|+++++ .++... ..-+.++++|++|++.++ .+... +......+++|++|+++++ .+.. .++..+..
T Consensus 185 ~~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~ 258 (968)
T PLN00113 185 TNLTSLEFLTLASN-QLVGQI-PRELGQMKSLKWIYLGYN-NLSGE-IPYEIGGLTSLNHLDLVYN-NLTG-PIPSSLGN 258 (968)
T ss_pred hhCcCCCeeeccCC-CCcCcC-ChHHcCcCCccEEECcCC-ccCCc-CChhHhcCCCCCEEECcCc-eecc-ccChhHhC
Confidence 34555666666555 222211 112235667777777664 23221 2222345788888888875 3332 23445677
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (356)
+++|+.|++.++ .+.......+..+++|++|++++| .+.......+.++++|+.|++++|. +...... ....+++|
T Consensus 259 l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~-~~~~l~~L 334 (968)
T PLN00113 259 LKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNN-FTGKIPV-ALTSLPRL 334 (968)
T ss_pred CCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCc-cCCcCCh-hHhcCCCC
Confidence 899999999885 343334455667899999999998 5555445567789999999999864 3332222 23458999
Q ss_pred CEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 297 EFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 297 ~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+.|++.+| .++......+.. . ++|+.|++++|.. ... ++......++|+.|++.
T Consensus 335 ~~L~L~~n-~l~~~~p~~l~~-~-~~L~~L~Ls~n~l-~~~-~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 335 QVLQLWSN-KFSGEIPKNLGK-H-NNLTVLDLSTNNL-TGE-IPEGLCSSGNLFKLILF 388 (968)
T ss_pred CEEECcCC-CCcCcCChHHhC-C-CCCcEEECCCCee-Eee-CChhHhCcCCCCEEECc
Confidence 99999987 454332233332 2 5999999998753 221 22333346788888764
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=7e-12 Score=102.21 Aligned_cols=257 Identities=22% Similarity=0.305 Sum_probs=140.5
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCC-CCCHHH-------HHHHHHhCCCccEEEeecCCcc
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ-KISDKG-------IEIISSTCPELKVFSIYWNVRV 153 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~ 153 (356)
....+++++++++. +.......+... +...++|+..++++.. +-.... +......||.|+.|+|+.+ -+
T Consensus 28 ~~~s~~~l~lsgnt-~G~EAa~~i~~~-L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~ 104 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-FGTEAARAIAKV-LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AF 104 (382)
T ss_pred ccCceEEEeccCCc-hhHHHHHHHHHH-HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-cc
Confidence 34667777777653 444444444433 3444667777766531 111111 1112244677777777766 33
Q ss_pred CHH---HHHHHHHhCCcCcEEeccCCCCCCHHHHHHHH------------HhCCCCcEEecCCCCCCC---hHHHHHHHh
Q 018439 154 TDI---GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA------------DNYQELESLNLTRCVKLT---DGGLQKILI 215 (356)
Q Consensus 154 ~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~---~~~~~~~~~ 215 (356)
.+. ++..++.++..|++|.+.+|. +...+-..+. ..-++|+.+...++ .+. ...+...++
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQ 182 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHH
Confidence 333 345556667777777777753 3322222211 12367777777663 332 233445556
Q ss_pred cCCCCcEEEcCCCCCCChHHH----HHhccCCCCCEEecCCCCCCchHHHHHhh----cCCCCcEEecCCCCCCCHHHHH
Q 018439 216 KCSSLRSLNLYALSGFTDEAY----KKISLLAHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVM 287 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~ 287 (356)
..+.|+.+.+..+ ++...+. ..+..+++|+.|+|..+ .++..+...++ .+++|++|++++| .+.+.+..
T Consensus 183 ~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~ 259 (382)
T KOG1909|consen 183 SHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAI 259 (382)
T ss_pred hccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccccccHH
Confidence 6777777777763 3333322 23446778888888777 45555544443 3567788888877 34444333
Q ss_pred HH----HhcCCCCCEEEecCCCCCCHHHHHHHHHH--ccccccEEecCCCCC-ccHHHHHHHHhhCC
Q 018439 288 AI----AEGCSSLEFLSLFGIVGVTDKCLEVLSRF--CSNTLTTLDVNGCVG-IKQRSRDELLQLFP 347 (356)
Q Consensus 288 ~l----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~--~~~~L~~L~l~~c~~-~~~~~~~~~~~~~p 347 (356)
.+ ....|.|+.|.+.+| .++..+...++.. -.|.|+.|++++|.. -.++.+..+...++
T Consensus 260 a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred HHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 33 344677888888776 5665544333211 124788888887753 13445555555543
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-13 Score=115.35 Aligned_cols=187 Identities=22% Similarity=0.241 Sum_probs=85.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCC
Q 018439 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (356)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 192 (356)
+.+|+.+.++++ .+...+....+..||+++.|+++.+....-..+..++..+|+|+.|+++... +....-......++
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhh
Confidence 345555555554 2333333334455566666666555444444455555555666666555421 11000000001244
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcE
Q 018439 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (356)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (356)
.|+.|.++.| .++...+..++..+|+|+.|++..+..+... ......+..|+.|+|+++..++.......+.+|.|+.
T Consensus 198 ~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 5555666555 4555555555555666666665553211100 0001123455556665554444444444555555555
Q ss_pred EecCCCCCCCHHH-----HHHHHhcCCCCCEEEecCC
Q 018439 273 LNLTWCVRITDVG-----VMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 273 L~l~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~~ 304 (356)
|+++.| .+.+.. .......+|+|+.|++..+
T Consensus 276 Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 276 LNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhcccc-CcchhcCCCccchhhhcccccceeeecccC
Confidence 555543 222211 1112233555666666554
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=8.7e-11 Score=95.96 Aligned_cols=238 Identities=18% Similarity=0.237 Sum_probs=157.9
Q ss_pred cccCCCccEEecCCCCCCCHHHHHHHHH---hCCCccEEEeecCC--ccCHHHH------HHHHHhCCcCcEEeccCCCC
Q 018439 110 LGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNV--RVTDIGI------QHLVKNCKHIIDLNLSGCKN 178 (356)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~--~~~~~~~------~~l~~~~~~L~~L~l~~~~~ 178 (356)
...+..++.+++++. .++......++. .-++|+..+++... +..++.. ...+..+|+|+.|+|++. .
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-A 103 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-c
Confidence 356689999999996 466665555544 34567766666431 2222221 222346789999999984 3
Q ss_pred CC---HHHHHHHHHhCCCCcEEecCCCCCCChHHHHHH------------HhcCCCCcEEEcCCCCCCChHHHHHh----
Q 018439 179 LL---DKSLQLIADNYQELESLNLTRCVKLTDGGLQKI------------LIKCSSLRSLNLYALSGFTDEAYKKI---- 239 (356)
Q Consensus 179 ~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~l---- 239 (356)
+. ...+..++.++..|++|.+.+| .+...+-..+ ..+-+.|+.+..+. ++..+.+...+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHH
Confidence 33 3467788888999999999997 5654333321 22457899999987 44444433333
Q ss_pred ccCCCCCEEecCCCCCCchHHHH----HhhcCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCCHHHH
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLA----CIAKCKNLVSLNLTWCVRITDVGVMAIA---EGCSSLEFLSLFGIVGVTDKCL 312 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~ 312 (356)
...+.|+.+.+..+ .+...++. .+.+|++|+.||+..+ .++..+-..++ ..+|+|+.|++++| .+...|.
T Consensus 182 ~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga 258 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGA 258 (382)
T ss_pred HhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccccccH
Confidence 35789999999998 45555543 3456999999999985 56555544444 34678999999999 6777665
Q ss_pred HHHHH---HccccccEEecCCCCCccHHHH---HHHHhhCCcceEeeec
Q 018439 313 EVLSR---FCSNTLTTLDVNGCVGIKQRSR---DELLQLFPHLMCFKVH 355 (356)
Q Consensus 313 ~~l~~---~~~~~L~~L~l~~c~~~~~~~~---~~~~~~~p~L~~l~l~ 355 (356)
..+.. ...|+|+.|.+.+|. ++.++. ..-+...|.|+.|++.
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred HHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCC
Confidence 55542 124599999999986 554332 3333447888888764
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=6.1e-13 Score=115.38 Aligned_cols=201 Identities=19% Similarity=0.164 Sum_probs=98.6
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
+++++|++.++ .++.-....+ .++.+|.+|.++. +.++...... .+.+|+|+.|++.++ .+...... -+.++++
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~-Fk~L~~L~~LdLnrN-~irive~l-tFqgL~S 246 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRS-FKRLPKLESLDLNRN-RIRIVEGL-TFQGLPS 246 (873)
T ss_pred CCceEEeeccc-cccccccccc-cccchheeeeccc-CcccccCHHH-hhhcchhhhhhcccc-ceeeehhh-hhcCchh
Confidence 46777777766 5544333222 2445666666665 3444322222 233677777777652 33211111 1334444
Q ss_pred CcEEEcCCC-----------------------CCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecC
Q 018439 220 LRSLNLYAL-----------------------SGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLT 276 (356)
Q Consensus 220 L~~L~l~~~-----------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 276 (356)
|+.|.+..+ +.+....-..+..++.|+.|+++++ .+....+..-..+++|++|+++
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEecc
Confidence 444444431 1111111112234556666666665 3332222223346788888888
Q ss_pred CCC--CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCcc--HHHHHHHHhhCCcceEe
Q 018439 277 WCV--RITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIK--QRSRDELLQLFPHLMCF 352 (356)
Q Consensus 277 ~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~--~~~~~~~~~~~p~L~~l 352 (356)
++. .++...+.. +..|++|+++++ .++. +...+-.+..+|++|++..+.--. +++...+ +.+|.|+.|
T Consensus 326 ~N~i~~l~~~sf~~----L~~Le~LnLs~N-si~~--l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f-~gl~~LrkL 397 (873)
T KOG4194|consen 326 SNRITRLDEGSFRV----LSQLEELNLSHN-SIDH--LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF-NGLPSLRKL 397 (873)
T ss_pred ccccccCChhHHHH----HHHhhhhccccc-chHH--HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh-ccchhhhhe
Confidence 742 233333332 456888888875 2332 111111233589999998764211 2222223 348888888
Q ss_pred eec
Q 018439 353 KVH 355 (356)
Q Consensus 353 ~l~ 355 (356)
.++
T Consensus 398 ~l~ 400 (873)
T KOG4194|consen 398 RLT 400 (873)
T ss_pred eec
Confidence 775
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-12 Score=109.38 Aligned_cols=213 Identities=18% Similarity=0.138 Sum_probs=144.9
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
+.+..|+.+.++.+. +.....+...+ .+++++.|+++.+-......+..++..+|+|+.|+++.+. +....-..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k----~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSK----ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhh----hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCcccc
Confidence 446778888887764 44333334443 4499999999997555666778889999999999999773 22211111
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (356)
....+++|+.|.+++| .++...+..+...+|+|+.|.++.+..+...... ..-+..|+.|+++++..+..+.....+
T Consensus 192 ~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccc
Confidence 1224689999999998 5777788888888999999999885333221111 122568899999997777666666778
Q ss_pred cCCCCCEEecCCCCCCchHHHHH------hhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLAC------IAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
.+|.|+.|+++.+ .+++..... ...+++|+.|+++.++-.....+..+. .+++|+.|.+..+
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLN 336 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccc
Confidence 8999999999988 344322222 234799999999986433333344433 2677877776554
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=6.4e-13 Score=115.28 Aligned_cols=154 Identities=21% Similarity=0.189 Sum_probs=98.5
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+.++++|+++. +.+..-. ...+-++..|++|++++ +.+.......+..+++|+.|+|+++ .++......+..+..|
T Consensus 268 l~kme~l~L~~-N~l~~vn-~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 268 LEKMEHLNLET-NRLQAVN-EGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQL 343 (873)
T ss_pred ecccceeeccc-chhhhhh-cccccccchhhhhccch-hhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHh
Confidence 56777777776 3333211 11233578899999988 4454444555667899999999998 5665444555556779
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH---HHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCC
Q 018439 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTD---KCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFP 347 (356)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p 347 (356)
++|+++.+ .++... ...+.++.+|++|++.++ .++. .+-..+ .. .++|+.|.+.|+. +... -+.....++
T Consensus 344 e~LnLs~N-si~~l~-e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f-~g-l~~LrkL~l~gNq-lk~I-~krAfsgl~ 416 (873)
T KOG4194|consen 344 EELNLSHN-SIDHLA-EGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAF-NG-LPSLRKLRLTGNQ-LKSI-PKRAFSGLE 416 (873)
T ss_pred hhhccccc-chHHHH-hhHHHHhhhhhhhcCcCC-eEEEEEecchhhh-cc-chhhhheeecCce-eeec-chhhhccCc
Confidence 99999985 444322 122334789999999876 3431 122222 22 2599999999864 4322 244455799
Q ss_pred cceEeeec
Q 018439 348 HLMCFKVH 355 (356)
Q Consensus 348 ~L~~l~l~ 355 (356)
+|++|++.
T Consensus 417 ~LE~LdL~ 424 (873)
T KOG4194|consen 417 ALEHLDLG 424 (873)
T ss_pred ccceecCC
Confidence 99999885
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.18 E-value=8.3e-11 Score=116.87 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=43.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhC
Q 018439 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (356)
.+++|+.|+++++..+... +. ...+++|+.|++.+|..+.. ++.-+..+++|+.|++.+|..+.. ++... .+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i--p~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~--Lp~~i-~l 703 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI--PD-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEI--LPTGI-NL 703 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC--Cc-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCc--cCCcC-CC
Confidence 4566777777665433211 11 23456777777766643322 222234566677777766654432 11111 35
Q ss_pred CCCcEEecCCCC
Q 018439 192 QELESLNLTRCV 203 (356)
Q Consensus 192 ~~L~~L~l~~~~ 203 (356)
++|+.|++++|.
T Consensus 704 ~sL~~L~Lsgc~ 715 (1153)
T PLN03210 704 KSLYRLNLSGCS 715 (1153)
T ss_pred CCCCEEeCCCCC
Confidence 566666666653
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.13 E-value=1.8e-10 Score=114.55 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=52.5
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
.+++|+.++++++..+..- .. +..+++|+.|++.+|..+. .++.....+++|+.|++++|..+..-. .-
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i--p~-----ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp--~~ 700 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI--PD-----LSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP--TG 700 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC--Cc-----cccCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC--Cc
Confidence 4567778888765433211 11 2345889999998876543 233344677888888888875443321 11
Q ss_pred HHhCCcCcEEeccCCCCC
Q 018439 162 VKNCKHIIDLNLSGCKNL 179 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~ 179 (356)
.++++|+.|++++|..+
T Consensus 701 -i~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 701 -INLKSLYRLNLSGCSRL 717 (1153)
T ss_pred -CCCCCCCEEeCCCCCCc
Confidence 14677888888877543
No 19
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.11 E-value=5.3e-11 Score=70.08 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=36.1
Q ss_pred CCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEecc
Q 018439 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (356)
Q Consensus 20 ~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l 64 (356)
.+|+|++.+||+||+.+|+.++++|||+|+++. .++.+|+++.+
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~-~~~~lW~~~~~ 46 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA-NDNSLWRRLCL 46 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH-TCCCHHHHHC-
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-CChhhhhhhcc
Confidence 455599999999999999999999999999995 44599997754
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.08 E-value=8.7e-10 Score=102.18 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=71.6
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
.+|++|++++...+.......+...+|+|++|.+.+. .+....+..+..++|+|..|+|++ +++++- ...+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISG-TNISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCC-CCccCc---HHHhcccc
Confidence 3555555555444444444444445555555555553 222223455555555555555555 344431 23444555
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchH-HHHH-h---hcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDE-GLAC-I---AKCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~-l---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (356)
|+.|.+.+-.......+..+..+++|++|+++......+. .+.. + ..+|+|+.||.++ +.++...+..+...-|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence 5555555432222233444455555555555544222211 0111 1 1145555555554 3444444444444445
Q ss_pred CCCEEEec
Q 018439 295 SLEFLSLF 302 (356)
Q Consensus 295 ~L~~L~l~ 302 (356)
+|+.+.+-
T Consensus 276 ~L~~i~~~ 283 (699)
T KOG3665|consen 276 NLQQIAAL 283 (699)
T ss_pred cHhhhhhh
Confidence 55444443
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.05 E-value=1.9e-09 Score=99.94 Aligned_cols=209 Identities=17% Similarity=0.256 Sum_probs=143.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHH-----------HHHHH--HhCCcCcEEeccCCCCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIG-----------IQHLV--KNCKHIIDLNLSGCKNLL 180 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~l~--~~~~~L~~L~l~~~~~~~ 180 (356)
-++..+++.+. ......+..... ..|+++.+.+...+.... +..++ ..-.+|++|+++|...+.
T Consensus 60 f~ltki~l~~~-~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 60 FNLTKIDLKNV-TLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred heeEEeeccce-ecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 36788888775 344445544432 348888887543222111 11111 122589999999966666
Q ss_pred HHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHH
Q 018439 181 DKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEG 260 (356)
Q Consensus 181 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 260 (356)
......+...+|.|++|.+.+ ..+..+.+.++..++|+|..|+++++ ++.+ +..++.+++|+.|.+.+-...+...
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~GIS~LknLq~L~mrnLe~e~~~~ 212 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISN--LSGISRLKNLQVLSMRNLEFESYQD 212 (699)
T ss_pred ccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccC--cHHHhccccHHHHhccCCCCCchhh
Confidence 556677888899999999998 46666668888999999999999985 4433 3667788999999998875555567
Q ss_pred HHHhhcCCCCcEEecCCCCCCCHHH-HH---HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCC
Q 018439 261 LACIAKCKNLVSLNLTWCVRITDVG-VM---AIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGC 331 (356)
Q Consensus 261 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c 331 (356)
+..+.++++|+.||+|......+.. +. .....+|+|+.|+.++. .+++..++.+...-+ +|+.+.+-+|
T Consensus 213 l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~-~L~~i~~~~~ 285 (699)
T KOG3665|consen 213 LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP-NLQQIAALDC 285 (699)
T ss_pred HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc-cHhhhhhhhh
Confidence 7788889999999998754333321 11 22244789999999985 688888888776544 8887766544
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.82 E-value=2.2e-10 Score=100.94 Aligned_cols=203 Identities=20% Similarity=0.208 Sum_probs=105.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhC
Q 018439 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (356)
.+|.|+.+.+..+ ++...+++.-+-.+..|..|+++.+ .+.. ++.-+...+++-.|++++. ++.. ....+..++
T Consensus 76 ~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShN-qL~E--vP~~LE~AKn~iVLNLS~N-~Iet-IPn~lfinL 149 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHN-QLRE--VPTNLEYAKNSIVLNLSYN-NIET-IPNSLFINL 149 (1255)
T ss_pred cchhhHHHhhhcc-ccccCCCCchhcccccceeeecchh-hhhh--cchhhhhhcCcEEEEcccC-cccc-CCchHHHhh
Confidence 3455555555443 2222333322233455666666655 2221 1111234466777777763 3322 112233345
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
..|-.|++++ +.+. .++.....+.+|++|.+++++ +..-.+..++.+++|++|.++++..--+.....+..+.+|.
T Consensus 150 tDLLfLDLS~-NrLe--~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 150 TDLLFLDLSN-NRLE--MLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred HhHhhhcccc-chhh--hcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 6666777766 3332 344556667788888887743 22233444556677777777777543333334455566788
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCC
Q 018439 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGC 331 (356)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c 331 (356)
.++++.+ .++- +......+++|+.|+++++ .+++-.... ..+ .+|++|+++.+
T Consensus 226 dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~N-~iteL~~~~--~~W-~~lEtLNlSrN 278 (1255)
T KOG0444|consen 226 DVDLSEN-NLPI--VPECLYKLRNLRRLNLSGN-KITELNMTE--GEW-ENLETLNLSRN 278 (1255)
T ss_pred hcccccc-CCCc--chHHHhhhhhhheeccCcC-ceeeeeccH--HHH-hhhhhhccccc
Confidence 8888754 3331 2222333678888888875 555432211 111 26666666654
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.77 E-value=3.2e-10 Score=99.88 Aligned_cols=269 Identities=19% Similarity=0.195 Sum_probs=153.5
Q ss_pred cceEeccccccchhhhHHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHH
Q 018439 58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 137 (356)
Q Consensus 58 l~~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 137 (356)
..+.+||+..+..++.+-... ..+..++-|.+.... +..+... ++.+.+|++|.+.++.-. .+.--.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v--~qMt~~~WLkLnrt~------L~~vPeE-L~~lqkLEHLs~~HN~L~---~vhGELs 75 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDV--EQMTQMTWLKLNRTK------LEQVPEE-LSRLQKLEHLSMAHNQLI---SVHGELS 75 (1255)
T ss_pred eeecccccCCcCCCCcCchhH--HHhhheeEEEechhh------hhhChHH-HHHHhhhhhhhhhhhhhH---hhhhhhc
Confidence 346677777766555443333 334566666665432 2222211 233478888888775221 2222235
Q ss_pred hCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (356)
.+|.|+.+.+..+ .+...+++.=+-++..|+.|+++. +++.. ++.-..+..++-.|+++++ ++.. .-.+++.++
T Consensus 76 ~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLSh-NqL~E--vP~~LE~AKn~iVLNLS~N-~Iet-IPn~lfinL 149 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSH-NQLRE--VPTNLEYAKNSIVLNLSYN-NIET-IPNSLFINL 149 (1255)
T ss_pred cchhhHHHhhhcc-ccccCCCCchhcccccceeeecch-hhhhh--cchhhhhhcCcEEEEcccC-cccc-CCchHHHhh
Confidence 6788888888776 555555544344677888888887 34433 2222334567778888873 4432 122345566
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
..|-.|+++++ .+ +.....+..+.+|++|.+++++ +....+..+..++.|+.|.+++- +-+-..+..-...+.+|.
T Consensus 150 tDLLfLDLS~N-rL-e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~T-qRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 150 TDLLFLDLSNN-RL-EMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred HhHhhhccccc-hh-hhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccc-cchhhcCCCchhhhhhhh
Confidence 66777788762 22 2333344567789999999984 44444555566777888888763 333222222223366899
Q ss_pred EEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 298 FLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 298 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
.++++.+ +++- .-+.+... ++|+.|+++++. ++. +..-...|.+|+.|+++
T Consensus 226 dvDlS~N-~Lp~-vPecly~l--~~LrrLNLS~N~-ite--L~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 226 DVDLSEN-NLPI-VPECLYKL--RNLRRLNLSGNK-ITE--LNMTEGEWENLETLNLS 276 (1255)
T ss_pred hcccccc-CCCc-chHHHhhh--hhhheeccCcCc-eee--eeccHHHHhhhhhhccc
Confidence 9999875 3331 11122222 589999999864 432 23333457777777664
No 24
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=4.4e-09 Score=84.47 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=27.9
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
+|++..+-+..|+.-+...-+....+|.+--|+++. +.+++.+-..-.+.+|.|..|.+.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 455555555555322211222222344444555544 244433333333446666666666554
No 25
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=2.6e-08 Score=75.61 Aligned_cols=106 Identities=21% Similarity=0.266 Sum_probs=84.6
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccc
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTL 323 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 323 (356)
.++.++-+++ .+...|++.+..++.++.|.+.+|..+.|.++..+....|+|+.|++++|+.||+.++..+.+. ++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l--knL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL--KNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh--hhh
Confidence 4566666676 6888888888889999999999999999999988888778999999999999999999888876 689
Q ss_pred cEEecCCCCCccH--HHHHHHHhhCCcceEe
Q 018439 324 TTLDVNGCVGIKQ--RSRDELLQLFPHLMCF 352 (356)
Q Consensus 324 ~~L~l~~c~~~~~--~~~~~~~~~~p~L~~l 352 (356)
+.|.+.+-+.+.. .....+...+|++.+.
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 9998887665542 2334555678887764
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.63 E-value=4.7e-09 Score=96.42 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=54.0
Q ss_pred HhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 018439 214 LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC 293 (356)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 293 (356)
+.++++|+.|+++++ .+..-....+.+++.|+.|+++|+ .++... ..+++++.|+.|...++ .+.. +..+. .+
T Consensus 379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp-~tva~~~~L~tL~ahsN-~l~~--fPe~~-~l 451 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLP-DTVANLGRLHTLRAHSN-QLLS--FPELA-QL 451 (1081)
T ss_pred hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhh-HHHHhhhhhHHHhhcCC-ceee--chhhh-hc
Confidence 344455555555542 111111112334445555555555 333222 33444455555544332 2221 12333 36
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCC
Q 018439 294 SSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVG 333 (356)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~ 333 (356)
|.|+.++++.+ +++...+...... ++|++|+++|+..
T Consensus 452 ~qL~~lDlS~N-~L~~~~l~~~~p~--p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLSCN-NLSEVTLPEALPS--PNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEecccc-hhhhhhhhhhCCC--cccceeeccCCcc
Confidence 78888888764 6666555443322 5899999988763
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=5.5e-08 Score=74.33 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=5.3
Q ss_pred HhhcCCCCcEEecCCC
Q 018439 263 CIAKCKNLVSLNLTWC 278 (356)
Q Consensus 263 ~l~~~~~L~~L~l~~~ 278 (356)
.++.+++|+.|++.++
T Consensus 108 ~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGN 123 (175)
T ss_dssp GGGG-TT--EEE-TT-
T ss_pred HHHcCCCcceeeccCC
Confidence 3444455555555543
No 28
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.46 E-value=1.7e-07 Score=53.38 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=33.4
Q ss_pred chHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcce
Q 018439 22 VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL 60 (356)
Q Consensus 22 ~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~ 60 (356)
|+|++..||.+|+..|+.++++|||.|+.++ ..+..|.
T Consensus 2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~-~~~~~~~ 39 (41)
T smart00256 2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLI-DSHDFWF 39 (41)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cChhhhh
Confidence 4589999999999999999999999999985 5566665
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.43 E-value=3.3e-08 Score=91.01 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
+.|+.|++.+ +.+++..+..+.++++|+.|+++++ .+.......+.++..|++|+++++ .++... ..+ ..|+.|+
T Consensus 359 ~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLP-DTV-ANLGRLH 433 (1081)
T ss_pred HHHHHHHHhc-Ccccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhh-HHH-HhhhhhH
Confidence 4556666766 5667777777778888888888887 444444455666777888888874 444332 222 2377788
Q ss_pred EEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 298 FLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 298 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
.|...++...... .+++. +.|+.++++.+ +++...++.... +|+|+.|+++
T Consensus 434 tL~ahsN~l~~fP---e~~~l--~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlS 484 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP---ELAQL--PQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLS 484 (1081)
T ss_pred HHhhcCCceeech---hhhhc--CcceEEecccc-hhhhhhhhhhCC-Ccccceeecc
Confidence 8877765322222 33333 57888888743 455444444333 4788888775
No 30
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=1.1e-05 Score=64.53 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=15.6
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecC
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~ 122 (356)
..++.++++++. +.......++.. ...-.+|+..+++
T Consensus 30 d~~~evdLSGNt-igtEA~e~l~~~-ia~~~~L~vvnfs 66 (388)
T COG5238 30 DELVEVDLSGNT-IGTEAMEELCNV-IANVRNLRVVNFS 66 (388)
T ss_pred cceeEEeccCCc-ccHHHHHHHHHH-HhhhcceeEeehh
Confidence 445555555542 334444444332 2223444444443
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.37 E-value=1.1e-05 Score=64.51 Aligned_cols=214 Identities=16% Similarity=0.122 Sum_probs=131.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCC---CccEEEeecC--CccCHHH------HHHHHHhCCcCcEEeccCCCC--C
Q 018439 113 LQDLESLNLNGCQKISDKGIEIISSTCP---ELKVFSIYWN--VRVTDIG------IQHLVKNCKHIIDLNLSGCKN--L 179 (356)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~--~~~~~~~------~~~l~~~~~~L~~L~l~~~~~--~ 179 (356)
+..+..++++++ .++......++.... +|+..+++.. ....+.. +...+..||+|+..+++.... -
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 588999999997 466666666655444 4554444422 1112221 112234689999999997421 1
Q ss_pred CHHHHHHHHHhCCCCcEEecCCCCCCChHH-------HHHH-----HhcCCCCcEEEcCCCCCCChH---H-HHHhccCC
Q 018439 180 LDKSLQLIADNYQELESLNLTRCVKLTDGG-------LQKI-----LIKCSSLRSLNLYALSGFTDE---A-YKKISLLA 243 (356)
Q Consensus 180 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~-----~~~~~~L~~L~l~~~~~~~~~---~-~~~l~~~~ 243 (356)
..+.+..++.+...|++|.+.+| .+...+ +..+ ...-|.|+....+.+ ++... . ...+....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhc
Confidence 23446667777899999999885 444311 1111 124578888888763 32211 1 11223446
Q ss_pred CCCEEecCCCCCCchHHHHHh-----hcCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCCHHHHHHH
Q 018439 244 HLKFLDLCGAQNLSDEGLACI-----AKCKNLVSLNLTWCVRITDVGVMAIA---EGCSSLEFLSLFGIVGVTDKCLEVL 315 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l 315 (356)
+|+.+.+..+ .+.+.++..+ .++.+|+.|++..+ .++-.+-..++ ..++.|++|.+.+| .++..|...+
T Consensus 186 ~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v 262 (388)
T COG5238 186 NLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSV 262 (388)
T ss_pred CceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch-hhccccHHHH
Confidence 8999999988 5666655544 45899999999885 45544433333 33567899999999 5666555544
Q ss_pred H----HHccccccEEecCCCC
Q 018439 316 S----RFCSNTLTTLDVNGCV 332 (356)
Q Consensus 316 ~----~~~~~~L~~L~l~~c~ 332 (356)
. ....|+|+.|-..+..
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHhhhhcCCCccccccchhh
Confidence 3 3334688888887754
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=9.4e-08 Score=73.03 Aligned_cols=107 Identities=24% Similarity=0.220 Sum_probs=36.2
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHH-HHHHHHhcCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDV-GVMAIAEGCSS 295 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~ 295 (356)
+.+|+.|+++++ .+. .+..+..+++|+.|+++++ .++..+......+|+|++|.++++ .+.+. .+..+ ..+|+
T Consensus 41 l~~L~~L~Ls~N-~I~--~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L-~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QIT--KLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPL-SSLPK 114 (175)
T ss_dssp -TT--EEE-TTS---S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGG-GG-TT
T ss_pred hcCCCEEECCCC-CCc--cccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHH-HcCCC
Confidence 344555555542 221 1223344566666666666 344321111134667777777664 33221 12222 34788
Q ss_pred CCEEEecCCCCCCHHHHHHHH-HHccccccEEecCC
Q 018439 296 LEFLSLFGIVGVTDKCLEVLS-RFCSNTLTTLDVNG 330 (356)
Q Consensus 296 L~~L~l~~~~~~~~~~~~~l~-~~~~~~L~~L~l~~ 330 (356)
|+.|++.++|--......... ..+ |+|+.|+-..
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~~ 149 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQD 149 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTEE
T ss_pred cceeeccCCcccchhhHHHHHHHHc-ChhheeCCEE
Confidence 888888887643333333332 334 4888887554
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.2e-06 Score=70.75 Aligned_cols=162 Identities=18% Similarity=0.121 Sum_probs=84.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
..++++++.++.--....+..+...+|.|+.|+++.+ .+... +..+.....+|++|.+.| ..++......+...+|.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCcccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence 5666666666433334445555666666666666655 22221 111111234666666665 34555555555555555
Q ss_pred CcEEecCCCC---------------------------CCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCC
Q 018439 194 LESLNLTRCV---------------------------KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK 246 (356)
Q Consensus 194 L~~L~l~~~~---------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 246 (356)
+++|.++.++ .........+..-+|++..+.+..|+.-+.........+|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 5555544420 0001112222334566666666555433333333344566666
Q ss_pred EEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 247 FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 247 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
.|+++.+..-+...+..+..++.|..|.++.+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 77777764334556677777777877777764
No 34
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.26 E-value=3.3e-07 Score=54.15 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=30.5
Q ss_pred CCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcce
Q 018439 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL 60 (356)
Q Consensus 20 ~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~ 60 (356)
++|+|++.+||++|+..|++++++||+.|++++ ..+..|.
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~-~~~~~~~ 44 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKRWRSLV-DSPRLWK 44 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH-TTHHHHH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH-cCCCccH
Confidence 445589999999999999999999999999985 4444443
No 35
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.9e-06 Score=65.70 Aligned_cols=76 Identities=26% Similarity=0.361 Sum_probs=42.7
Q ss_pred ChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhc-CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 018439 232 TDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVT 308 (356)
Q Consensus 232 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 308 (356)
...++..+..++.++.|.+.+|..+.|.++..++. .++|+.|+|++|..+++.++.-+.. +++|+.|.+.+-+.+.
T Consensus 114 ~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 114 MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhh
Confidence 34444555555555555555555555555555555 4566666666666666665555543 5666666665544433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.11 E-value=6.3e-07 Score=72.50 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
.|.++.|+++++. +.. +..++.+++|.+||++++ .++. +..+-..+-++++|.+.++
T Consensus 306 ~Pkir~L~lS~N~-i~~--v~nLa~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 306 APKLRRLILSQNR-IRT--VQNLAELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred ccceeEEeccccc-eee--ehhhhhcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhh
Confidence 4566666666653 221 122445556666666653 2221 1111222445555555554
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.92 E-value=4.7e-06 Score=78.39 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=11.1
Q ss_pred ccccEEecCCCCCccHHHHH
Q 018439 321 NTLTTLDVNGCVGIKQRSRD 340 (356)
Q Consensus 321 ~~L~~L~l~~c~~~~~~~~~ 340 (356)
++|+.|++++++ ++.....
T Consensus 445 ~~L~~LdLs~N~-Ls~~~~~ 463 (788)
T PRK15387 445 SSETTVNLEGNP-LSERTLQ 463 (788)
T ss_pred cCCCeEECCCCC-CCchHHH
Confidence 377777777765 4433333
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.92 E-value=4e-06 Score=80.45 Aligned_cols=108 Identities=25% Similarity=0.291 Sum_probs=51.1
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhc
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (356)
..+|.|+.|++++|.... .++..++.+-+|+.|+++++ .+.. ++.-...+..|.+|++.....+. .+..+...
T Consensus 568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t-~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~ 640 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT-GISH--LPSGLGNLKKLIYLNLEVTGRLE--SIPGILLE 640 (889)
T ss_pred hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC-Cccc--cchHHHHHHhhheeccccccccc--cccchhhh
Confidence 456666666666543222 23333444556666666663 3332 33333445566666665532221 12333444
Q ss_pred CCCCcEEEcCCCC-CCChHHHHHhccCCCCCEEecC
Q 018439 217 CSSLRSLNLYALS-GFTDEAYKKISLLAHLKFLDLC 251 (356)
Q Consensus 217 ~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~ 251 (356)
+++|++|.+.... .........+.++.+|+.++..
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 6666666665532 2222233334444455554443
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.91 E-value=9.4e-07 Score=74.09 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=52.4
Q ss_pred hccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH
Q 018439 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRF 318 (356)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 318 (356)
+..+++|+.|+++++ .++...-..+.....+++|.+..+ .+.... ...+.++..|+.|++.++ +++......+-..
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~-~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVS-SGMFQGLSGLKTLSLYDN-QITTVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHH-HHhhhccccceeeeecCC-eeEEEeccccccc
Confidence 445677777777776 455444444445556667766653 222211 223345677888888875 5554332222221
Q ss_pred ccccccEEecCCCCCccHHHHHHHHh
Q 018439 319 CSNTLTTLDVNGCVGIKQRSRDELLQ 344 (356)
Q Consensus 319 ~~~~L~~L~l~~c~~~~~~~~~~~~~ 344 (356)
.+|.+|++-.+|-..+--+.++.+
T Consensus 346 --~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 346 --FSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred --ceeeeeehccCcccCccchHHHHH
Confidence 367777776544333323444443
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.87 E-value=1.4e-05 Score=75.46 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=15.0
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
++|+.|++++| .++... ..+ .++|+.|++++|
T Consensus 346 ~sL~~L~Ls~N-~L~~LP-~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 346 PELQVLDVSKN-QITVLP-ETL---PPTITTLDVSRN 377 (754)
T ss_pred CcccEEECCCC-CCCcCC-hhh---cCCcCEEECCCC
Confidence 45666666654 232110 011 245666666655
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.77 E-value=1.4e-05 Score=76.86 Aligned_cols=110 Identities=20% Similarity=0.136 Sum_probs=53.4
Q ss_pred hCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (356)
.+|+|++|-+..+...-......++..+|.|+.|+++++..+.. ++..+..+-+|+.|++++ +.++ .++.-+..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCcc--ccchHHHHH
Confidence 45566666665442100111112233566667777666433322 444444455666666666 3444 245555556
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGA 253 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 253 (356)
..|.+|++......... ......+++|++|.+...
T Consensus 618 k~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred Hhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 66666666653221111 111223566666666554
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.76 E-value=7.1e-06 Score=66.57 Aligned_cols=126 Identities=24% Similarity=0.281 Sum_probs=62.2
Q ss_pred CCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh-ccCC
Q 018439 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI-SLLA 243 (356)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~ 243 (356)
+..|+++++++ +.++. +....+-.|.++.|+++.+ .+.. +.. +..+++|++|+++++ ... ....+ .++-
T Consensus 283 Wq~LtelDLS~-N~I~~--iDESvKL~Pkir~L~lS~N-~i~~--v~n-La~L~~L~~LDLS~N-~Ls--~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQ--IDESVKLAPKLRRLILSQN-RIRT--VQN-LAELPQLQLLDLSGN-LLA--ECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccc-cchhh--hhhhhhhccceeEEecccc-ceee--ehh-hhhcccceEeecccc-hhH--hhhhhHhhhc
Confidence 34566666665 23322 3333444566666666663 3321 111 344666666666652 111 11111 1344
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCH-HHHHHHHhcCCCCCEEEecCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD-VGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
+.+.|.+.++ .+. .+..+.++-+|..||++++ .+.. +.+..+. .+|.|+.+.+.+++
T Consensus 353 NIKtL~La~N-~iE--~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIE--TLSGLRKLYSLVNLDLSSN-QIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhh-hHh--hhhhhHhhhhheecccccc-chhhHHHhcccc-cccHHHHHhhcCCC
Confidence 6666666655 221 2333445556777777764 3332 2233333 37777777777764
No 43
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.63 E-value=3e-05 Score=73.17 Aligned_cols=32 Identities=34% Similarity=0.328 Sum_probs=19.2
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 294 SSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
++|+.|+++++ .++. +.. .+++|+.|+++++.
T Consensus 382 ~~L~~LdLs~N-~Lt~--LP~----l~s~L~~LdLS~N~ 413 (788)
T PRK15387 382 SGLKELIVSGN-RLTS--LPV----LPSELKELMVSGNR 413 (788)
T ss_pred cccceEEecCC-cccC--CCC----cccCCCEEEccCCc
Confidence 46777888775 3442 111 12478888888764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.55 E-value=1e-05 Score=73.42 Aligned_cols=103 Identities=22% Similarity=0.191 Sum_probs=46.0
Q ss_pred CCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHH-hcCCCCcEEEcCCCCCCChHHHHHhccCC
Q 018439 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL-IKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (356)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (356)
++.|+.|+++.. .+.+ +.. ...++.|++|+++.+ .+.. ++.+. .+| +|..|.++++. -..+..+.++.
T Consensus 186 l~ale~LnLshN-k~~~--v~~-Lr~l~~LkhLDlsyN-~L~~--vp~l~~~gc-~L~~L~lrnN~---l~tL~gie~Lk 254 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTK--VDN-LRRLPKLKHLDLSYN-CLRH--VPQLSMVGC-KLQLLNLRNNA---LTTLRGIENLK 254 (1096)
T ss_pred HHHhhhhccchh-hhhh--hHH-HHhcccccccccccc-hhcc--ccccchhhh-hheeeeecccH---HHhhhhHHhhh
Confidence 355666666652 3322 222 223666666666652 2221 11111 112 25556665521 12233444556
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
+|+.|+++++.......+..+..+..|+.|.+.++
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 66666666553222223333444444555555553
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=2.1e-05 Score=71.51 Aligned_cols=195 Identities=24% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHh---
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN--- 190 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--- 190 (356)
++++.|.+-..+.-.......+ -.+..||+|.+.+|.--+..++..+- .+|++|--.+ .+ .+++.++..
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~--Sl--~Al~~v~ascgg 155 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHN--SL--DALRHVFASCGG 155 (1096)
T ss_pred hhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc--cH--HHHHHHHHHhcc
Confidence 5555555544333222211111 23567888888877433444444432 2344442211 11 123333321
Q ss_pred -------CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHH
Q 018439 191 -------YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLAC 263 (356)
Q Consensus 191 -------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 263 (356)
+..|...+.++ +.+. .+...+.-++.+++|+++.+ .+.+ ...+..+++|++|+|+++. +.. +..
T Consensus 156 d~~ns~~Wn~L~~a~fsy-N~L~--~mD~SLqll~ale~LnLshN-k~~~--v~~Lr~l~~LkhLDlsyN~-L~~--vp~ 226 (1096)
T KOG1859|consen 156 DISNSPVWNKLATASFSY-NRLV--LMDESLQLLPALESLNLSHN-KFTK--VDNLRRLPKLKHLDLSYNC-LRH--VPQ 226 (1096)
T ss_pred ccccchhhhhHhhhhcch-hhHH--hHHHHHHHHHHhhhhccchh-hhhh--hHHHHhcccccccccccch-hcc--ccc
Confidence 12333333333 2222 12222334567777777662 3322 2355567777777777763 211 111
Q ss_pred hhc-CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHccccccEEecCCCC
Q 018439 264 IAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTD-KCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 264 l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
++. ..+|..|.+.++. ++. +..+. ++.+|+.|+++.+ .+.+ ..+..+-.. ..|+.|++.|+|
T Consensus 227 l~~~gc~L~~L~lrnN~-l~t--L~gie-~LksL~~LDlsyN-ll~~hseL~pLwsL--s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 227 LSMVGCKLQLLNLRNNA-LTT--LRGIE-NLKSLYGLDLSYN-LLSEHSELEPLWSL--SSLIVLWLEGNP 290 (1096)
T ss_pred cchhhhhheeeeecccH-HHh--hhhHH-hhhhhhccchhHh-hhhcchhhhHHHHH--HHHHHHhhcCCc
Confidence 111 1237777777642 221 22222 2567777777764 2332 223322222 367777777765
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.41 E-value=2.6e-05 Score=48.65 Aligned_cols=11 Identities=27% Similarity=0.467 Sum_probs=4.9
Q ss_pred CCCCCEEEecC
Q 018439 293 CSSLEFLSLFG 303 (356)
Q Consensus 293 ~~~L~~L~l~~ 303 (356)
+++|++|++++
T Consensus 48 l~~L~~L~l~~ 58 (61)
T PF13855_consen 48 LPNLRYLDLSN 58 (61)
T ss_dssp STTESEEEETS
T ss_pred CCCCCEEeCcC
Confidence 44444444444
No 47
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.36 E-value=0.00017 Score=68.34 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
++|+.|++++| .++... ..+ .++|+.|++++| .++. + ....+++|++|++++|.
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP-~~l---~~sL~~L~Ls~N-~L~~--L---P~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLP-ASL---PPELQVLDVSKN-QITV--L---PETLPPTITTLDVSRNA 378 (754)
T ss_pred ccceeccccCC-ccccCC-hhh---cCcccEEECCCC-CCCc--C---ChhhcCCcCEEECCCCc
Confidence 57888888876 333211 111 368999999987 4542 1 11112588888888774
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.34 E-value=7.4e-05 Score=63.08 Aligned_cols=133 Identities=20% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
+.-.++.+..+ .++..+-. ..+.+++|++|+++.+ .++..+-.++ ..+++|.+|.+.+.+.+++.. ......+..
T Consensus 67 ~~tveirLdqN-~I~~iP~~-aF~~l~~LRrLdLS~N-~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQN-QISSIPPG-AFKTLHRLRRLDLSKN-NISFIAPDAF-KGLASLLSLVLYGNNKITDLP-KGAFGGLSS 141 (498)
T ss_pred CcceEEEeccC-CcccCChh-hccchhhhceeccccc-chhhcChHhh-hhhHhhhHHHhhcCCchhhhh-hhHhhhHHH
Confidence 34556666553 33322222 2366899999999988 5554433332 356777777777755666532 222233455
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCC
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQ 254 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 254 (356)
|+.|.+.-+ .+.- .....+..++++..|.++++ .+....-..+.....++++.+..++
T Consensus 142 lqrLllNan-~i~C-ir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 142 LQRLLLNAN-HINC-IRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhcChh-hhcc-hhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 565555432 2221 23345666888888888763 1111101112234556666555443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.23 E-value=3.2e-05 Score=48.23 Aligned_cols=59 Identities=29% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
|+|++|++.++ .+.......+..+++|++|+++++ .+.......+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 46777777774 443333334456677888888776 455444445667777888877765
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.14 E-value=0.00086 Score=62.98 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=40.3
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (356)
++.|++.++ .+.......+..+++|+.|+|+++ .+.......++.+++|+.|++++| .++...... ...+++|+.|
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRIL 495 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEE
Confidence 455555552 333333334555666666666665 343333334555666666666654 332211112 2235666666
Q ss_pred EecCC
Q 018439 300 SLFGI 304 (356)
Q Consensus 300 ~l~~~ 304 (356)
+++++
T Consensus 496 ~Ls~N 500 (623)
T PLN03150 496 NLNGN 500 (623)
T ss_pred ECcCC
Confidence 66654
No 51
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.08 E-value=0.00079 Score=33.53 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=10.3
Q ss_pred CCCCEEEecCCCCCCHHHHHHH
Q 018439 294 SSLEFLSLFGIVGVTDKCLEVL 315 (356)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~~~~l 315 (356)
|+|++|++++|+++++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444443
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.00 E-value=5.8e-06 Score=61.45 Aligned_cols=129 Identities=21% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 018439 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (356)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (356)
+.+|+.|++.++ .+.+ ++.-+.++++|+.|++... .+.. ++.=...+|.|+.|++.+ +++.+..++.-+-.+.
T Consensus 55 l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmn-rl~~--lprgfgs~p~levldlty-nnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMN-RLNI--LPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMT 127 (264)
T ss_pred hhhhhhhhcccc-hhhh--cChhhhhchhhhheecchh-hhhc--CccccCCCchhhhhhccc-cccccccCCcchhHHH
Confidence 456666666554 3322 2222345566666666431 1111 111122356677777766 3554433333333345
Q ss_pred CCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
.|+-|++++++ .......++++++|+.|.+..+..++ ....++.+.+|++|+|.++
T Consensus 128 tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 128 TLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHhcCCC--cccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence 55666665521 12223345567777777777664332 1234555666777777764
No 53
>PLN03150 hypothetical protein; Provisional
Probab=97.00 E-value=0.0018 Score=60.88 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=58.3
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
++.|++.++ .+.. .++..+..+++|+.|+++++ .+.......+..+++|+.|+++++ .++......++++++|++|
T Consensus 420 v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEE
Confidence 556666653 3321 22334556777777777763 343333445667777777777777 4554444556777777777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
++++|. ++......+.....++..+++.++
T Consensus 496 ~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 496 NLNGNS-LSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ECcCCc-ccccCChHHhhccccCceEEecCC
Confidence 777653 332211222222234555665554
No 54
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.98 E-value=5.7e-06 Score=61.48 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=85.9
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
.++..|.++.+ .++.. +.-++.+.+|+.|++.+ +++.+ ++.-+..+|+|+.|+++. +.+. .++.-++++|.
T Consensus 33 s~ITrLtLSHN-Kl~~v--ppnia~l~nlevln~~n-nqie~--lp~~issl~klr~lnvgm-nrl~--~lprgfgs~p~ 103 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVV--PPNIAELKNLEVLNLSN-NQIEE--LPTSISSLPKLRILNVGM-NRLN--ILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhcccC-ceeec--CCcHHHhhhhhhhhccc-chhhh--cChhhhhchhhhheecch-hhhh--cCccccCCCch
Confidence 34455566655 22211 11123467899999887 45544 444445688999998875 3332 23445667899
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (356)
|+.|++.+++-........+..+..|+.|.++.++ +. .....++++++|+.|.+..++-++-- ..+ ..+..|++|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe-~lp~dvg~lt~lqil~lrdndll~lp--kei-g~lt~lrel 178 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FE-ILPPDVGKLTNLQILSLRDNDLLSLP--KEI-GDLTRLREL 178 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cc-cCChhhhhhcceeEEeeccCchhhCc--HHH-HHHHHHHHH
Confidence 99999987432221111122234567777777763 21 11234677888999988876533310 111 124578888
Q ss_pred EecCC
Q 018439 300 SLFGI 304 (356)
Q Consensus 300 ~l~~~ 304 (356)
.|.++
T Consensus 179 hiqgn 183 (264)
T KOG0617|consen 179 HIQGN 183 (264)
T ss_pred hcccc
Confidence 88775
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.79 E-value=0.0021 Score=31.99 Aligned_cols=24 Identities=50% Similarity=0.843 Sum_probs=16.8
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHH
Q 018439 267 CKNLVSLNLTWCVRITDVGVMAIA 290 (356)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~l~ 290 (356)
|++|++|++++|..++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466777777777777777766654
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00019 Score=57.29 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=14.5
Q ss_pred CcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCC
Q 018439 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201 (356)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 201 (356)
|+|+.|.++....-....+..++..+|+|++|++++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 444555444421111222333334445555555444
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00037 Score=55.74 Aligned_cols=85 Identities=26% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhh-cCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIA-KCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (356)
+..|+.|.+.++.. ..+..+..+++|+.|.++.+..-...++..+. .+|+|++|+++++ .+.+..-..-...+++
T Consensus 42 ~~~le~ls~~n~gl---tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGL---TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccce---eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 34445555444221 12233445667777777665222222233333 3577777777764 3332111111223556
Q ss_pred CCEEEecCCC
Q 018439 296 LEFLSLFGIV 305 (356)
Q Consensus 296 L~~L~l~~~~ 305 (356)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 6667776663
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.47 E-value=0.0028 Score=55.19 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=95.4
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhc
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (356)
..|+++++|++++| .++.- +. -.++|++|.+.+|..++. ++... .++|++|.+.+|..+.. +
T Consensus 49 ~~~~~l~~L~Is~c-~L~sL--P~---LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s--L------ 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESL--PV---LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG--L------ 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCccc--CC---CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc--c------
Confidence 45799999999988 54432 11 124799999998876533 22222 25899999998755531 1
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccC-CCCCEEecCCCCCCchHHHHHhh-c-CCCCcEEecCCCCCCCHHHHHHHHhcC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLL-AHLKFLDLCGAQNLSDEGLACIA-K-CKNLVSLNLTWCVRITDVGVMAIAEGC 293 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~~ 293 (356)
.++|+.|++.+. ... .+..+ ++|+.|.+.+...... ..+. . .++|++|++++|..+. +...+
T Consensus 111 P~sLe~L~L~~n-~~~-----~L~~LPssLk~L~I~~~n~~~~---~~lp~~LPsSLk~L~Is~c~~i~------LP~~L 175 (426)
T PRK15386 111 PESVRSLEIKGS-ATD-----SIKNVPNGLTSLSINSYNPENQ---ARIDNLISPSLKTLSLTGCSNII------LPEKL 175 (426)
T ss_pred ccccceEEeCCC-CCc-----ccccCcchHhheeccccccccc---cccccccCCcccEEEecCCCccc------Ccccc
Confidence 357888888652 221 12222 4688888754321111 1111 1 2579999999886442 11112
Q ss_pred -CCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHH
Q 018439 294 -SSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSR 339 (356)
Q Consensus 294 -~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~ 339 (356)
.+|+.|.++.+...+ +.......|+++ .|.+.+|..+..+.+
T Consensus 176 P~SLk~L~ls~n~~~s---LeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 176 PESLQSITLHIEQKTT---WNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred cccCcEEEeccccccc---ccCccccccccc-EechhhhcccCHHHh
Confidence 479999987642111 000111223577 888888866654433
No 59
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.42 E-value=0.0013 Score=59.25 Aligned_cols=192 Identities=29% Similarity=0.371 Sum_probs=93.1
Q ss_pred ccEEecCCCCCCCHHHHHHHH---HhCCCccEEEeecCCccCHHHHHHHHHhCC----cCcEEeccCCCCCCHHHHHHHH
Q 018439 116 LESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQHLVKNCK----HIIDLNLSGCKNLLDKSLQLIA 188 (356)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~~~~~~ 188 (356)
+..+++.+| .+.+.++..+. ...++|..|+++++ .+.+.+...+...++ .|+.|++..|. ++......+.
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHH
Confidence 666777776 34444544443 44567778888877 666777666654443 34556666552 3333332222
Q ss_pred H---hCCCCcEEecCCCCCCChHHHHHH---Hh----cCCCCcEEEcCCCCCCChHHHHH----hccCCC-CCEEecCCC
Q 018439 189 D---NYQELESLNLTRCVKLTDGGLQKI---LI----KCSSLRSLNLYALSGFTDEAYKK----ISLLAH-LKFLDLCGA 253 (356)
Q Consensus 189 ~---~~~~L~~L~l~~~~~~~~~~~~~~---~~----~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~-L~~L~l~~~ 253 (356)
. ..+.++.++++.+ .+...+...+ +. ...++++|++.+|. ++...... +...++ +..+++..+
T Consensus 166 ~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 2 2455555666553 2322222211 11 23456666666643 22222221 223333 444666555
Q ss_pred CCCchHHHHHhhc----C-CCCcEEecCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCCHHHHHHH
Q 018439 254 QNLSDEGLACIAK----C-KNLVSLNLTWCVRITDVGVMAI---AEGCSSLEFLSLFGIVGVTDKCLEVL 315 (356)
Q Consensus 254 ~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l 315 (356)
.+.|.++..+.. + ++++++++..| .+++.+...+ ...+++++.|.+..+ .+++.+...+
T Consensus 244 -~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~ 310 (478)
T KOG4308|consen 244 -KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELL 310 (478)
T ss_pred -CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHH
Confidence 455554444432 2 45566666654 3433333222 233456666666554 3444444433
No 60
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.27 E-value=0.0022 Score=54.72 Aligned_cols=113 Identities=22% Similarity=0.210 Sum_probs=63.5
Q ss_pred HHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHH
Q 018439 184 LQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLAC 263 (356)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 263 (356)
+......+++|..|+++++ .+.+ ++.-...+..|+.|+++.+ .+. .....+.....++.+-.+.+ .+..-....
T Consensus 427 v~~~l~~l~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~N-rFr-~lP~~~y~lq~lEtllas~n-qi~~vd~~~ 500 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFN-RFR-MLPECLYELQTLETLLASNN-QIGSVDPSG 500 (565)
T ss_pred chHHHHhhhcceeeecccc-hhhh--cchhhhhhhhhheeccccc-ccc-cchHHHhhHHHHHHHHhccc-cccccChHH
Confidence 4455566888888888873 3332 2222344566888888773 332 12222222334444444444 343333345
Q ss_pred hhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 264 IAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 264 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
+.++.+|..||+.+++ +.. +.....+|.+|++|++.|++
T Consensus 501 l~nm~nL~tLDL~nNd-lq~--IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNND-LQQ--IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCCCc-hhh--CChhhccccceeEEEecCCc
Confidence 6677788888887643 221 22334457788888888864
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0018 Score=52.48 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=62.4
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (356)
+.+.+.|++-+| ++.| ......++.|+.|.|+-+ .++ .+..+..|++|++|.+..+ .+.+..-..-..++|+|
T Consensus 18 l~~vkKLNcwg~-~L~D--Isic~kMp~lEVLsLSvN-kIs--sL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDD--ISICEKMPLLEVLSLSVN-KIS--SLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCC-CccH--HHHHHhcccceeEEeecc-ccc--cchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 345566777664 3433 233346788888888776 443 2456677888888888763 55554444445568888
Q ss_pred CEEEecCCCCCCHHH--HHHH-HHHccccccEEe
Q 018439 297 EFLSLFGIVGVTDKC--LEVL-SRFCSNTLTTLD 327 (356)
Q Consensus 297 ~~L~l~~~~~~~~~~--~~~l-~~~~~~~L~~L~ 327 (356)
+.|.|..++-....+ .... .+.. |+|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 888888766554333 2222 2222 4888876
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.0016 Score=52.68 Aligned_cols=100 Identities=27% Similarity=0.315 Sum_probs=49.1
Q ss_pred cCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCC
Q 018439 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK 246 (356)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 246 (356)
+.+.|+.-|| .++|.+ +...+|.|+.|.++- +.++. +. -+..|.+|+.|+|..+..-.-+.+..+.++|+|+
T Consensus 20 ~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSv-NkIss--L~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSV-NKISS--LA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCC-CccHHH---HHHhcccceeEEeec-ccccc--ch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 4445555554 344422 223356666666655 23332 11 1344666666666553222233445555667777
Q ss_pred EEecCCCCCCchHH----HHHhhcCCCCcEEe
Q 018439 247 FLDLCGAQNLSDEG----LACIAKCKNLVSLN 274 (356)
Q Consensus 247 ~L~l~~~~~~~~~~----~~~l~~~~~L~~L~ 274 (356)
.|.|..++.....+ ...+.-+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77666554333222 12234466777664
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.01 E-value=0.0037 Score=56.31 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=123.0
Q ss_pred ccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCC----ccEEEeecCCccCHHHHHHH
Q 018439 86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE----LKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 86 l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~l 161 (356)
+..+.+.++. +.+...+.+... ....++|+.|+++++ ++++.+...+...++. ++.|.+..| .++..+...+
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~-l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQA-LKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHH-hcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence 5566676663 555566666555 466688899999886 5777777766655443 556777766 6666655444
Q ss_pred HH---hCCcCcEEeccCCCCCCHHHHHHHHH-------hCCCCcEEecCCCCCCChHHHHH---HHhcCCC-CcEEEcCC
Q 018439 162 VK---NCKHIIDLNLSGCKNLLDKSLQLIAD-------NYQELESLNLTRCVKLTDGGLQK---ILIKCSS-LRSLNLYA 227 (356)
Q Consensus 162 ~~---~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~-L~~L~l~~ 227 (356)
.. ....++.+++..+... ..+...+.. ...++++|.+.+| .++...... .+...+. +..|++.+
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 33 3456777777764322 222222221 2457888888886 444333332 2333444 55577766
Q ss_pred CCCCChHHHHHhc----cC-CCCCEEecCCCCCCchHHHHHhh----cCCCCcEEecCCCCCCCHHHHHHHHhc---CCC
Q 018439 228 LSGFTDEAYKKIS----LL-AHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVMAIAEG---CSS 295 (356)
Q Consensus 228 ~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~ 295 (356)
+.+.+.....+. .. +.++++++..+ .+++.+...+. .++.++.+.++. +.+.+.+....... ...
T Consensus 243 -n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 243 -NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALERKTP 319 (478)
T ss_pred -cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhhccc
Confidence 455555555443 23 56788888888 56665555543 467888888886 46666655444322 223
Q ss_pred CCEEEecCC
Q 018439 296 LEFLSLFGI 304 (356)
Q Consensus 296 L~~L~l~~~ 304 (356)
+..+.+.++
T Consensus 320 ~~~~~l~~~ 328 (478)
T KOG4308|consen 320 LLHLVLGGT 328 (478)
T ss_pred chhhhcccc
Confidence 444555443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.00 E-value=0.0021 Score=49.52 Aligned_cols=105 Identities=16% Similarity=0.112 Sum_probs=55.0
Q ss_pred CcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCC
Q 018439 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (356)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (356)
.+...+++++.+..... ...++++|.+|.+.+ +.++.- -+.+...+|+|+.|.+.++....-..+..++.+|.|
T Consensus 42 d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~n-NrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNN-NRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhcc----cCCCccccceEEecC-Ccceee-ccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 45566666653222111 123467777777776 344421 112233467777777777433223334455667777
Q ss_pred CEEecCCCCCCchHH---HHHhhcCCCCcEEecCC
Q 018439 246 KFLDLCGAQNLSDEG---LACIAKCKNLVSLNLTW 277 (356)
Q Consensus 246 ~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~ 277 (356)
++|.+-+++ +.... ...+..+|+|+.||+..
T Consensus 116 ~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 777777663 22211 11133467777777654
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.94 E-value=0.013 Score=33.49 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
+|++|+++++ .+++.. ..++++++|+.|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~-~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLP-PELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHG-GHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccC-chHhCCCCCCEEEecCC
Confidence 4555555555 343211 11455555555555553
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.87 E-value=0.0066 Score=53.99 Aligned_cols=171 Identities=27% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhC-CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTC-PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 192 (356)
+.++.|++.+. .+. .+....... ++|+.|++.++ .+.... .-...+++|+.|++..+ .+.+ +.......+
T Consensus 116 ~~l~~L~l~~n-~i~--~i~~~~~~~~~nL~~L~l~~N-~i~~l~--~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNN-NIT--DIPPLIGLLKSNLKELDLSDN-KIESLP--SPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLS 186 (394)
T ss_pred cceeEEecCCc-ccc--cCccccccchhhccccccccc-chhhhh--hhhhccccccccccCCc-hhhh--hhhhhhhhh
Confidence 45666666553 222 222222233 26667766655 333220 11235667777777663 3333 222221356
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcE
Q 018439 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (356)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (356)
+|+.|++++. .+.+ ++........|++|.+.+...+ .....+.+..++..+.+.++. +.+. ...++.+++++.
T Consensus 187 ~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~-~~~~-~~~~~~l~~l~~ 259 (394)
T COG4886 187 NLNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNK-LEDL-PESIGNLSNLET 259 (394)
T ss_pred hhhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCce-eeec-cchhccccccce
Confidence 6677777662 3332 2222223344666666553211 112223344455555544442 1110 233445555666
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 273 LNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 273 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
|+++++ .+++... .....+++.|++++.
T Consensus 260 L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 260 LDLSNN-QISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred eccccc-ccccccc---ccccCccCEEeccCc
Confidence 666653 3433222 222456666666653
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.70 E-value=0.018 Score=50.35 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=83.2
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..|++++.|++++| .++. ++ .--++|++|.+.+|..++. ++..+ .++|++|++.+|..+. .+ .
T Consensus 49 ~~~~~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----sL--P 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----GL--P 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----cc--c
Confidence 45799999999987 4443 22 1123699999998876642 22212 3689999999875442 12 2
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcC-CCCcEEecCCCCCCCHHHHHHHHhcC-CCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKC-KNLVSLNLTWCVRITDVGVMAIAEGC-SSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
++|+.|++.+.. .. .+..+ ++|+.|.+.++......... ..+ ++|+.|.+.+|..+. +....|
T Consensus 112 ~sLe~L~L~~n~-~~-----~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~------LP~~LP 176 (426)
T PRK15386 112 ESVRSLEIKGSA-TD-----SIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII------LPEKLP 176 (426)
T ss_pred cccceEEeCCCC-Cc-----ccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc------Cccccc
Confidence 578888886542 21 13333 46888887543222111111 113 579999999986442 222234
Q ss_pred ccccEEecCCC
Q 018439 321 NTLTTLDVNGC 331 (356)
Q Consensus 321 ~~L~~L~l~~c 331 (356)
++|+.|.++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 69999998764
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.68 E-value=0.0046 Score=51.32 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=37.7
Q ss_pred hHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEecccc
Q 018439 23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLRE 66 (356)
Q Consensus 23 peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~ 66 (356)
.++-..||+||+..++..+-.||++|+++ ...|.+|+.+....
T Consensus 84 ~hi~e~ilsyld~~sLc~celv~k~W~r~-l~dg~~WKkLie~~ 126 (499)
T KOG0281|consen 84 DHIAENILSYLDALSLCACELVCKEWKRV-LSDGMLWKKLIERM 126 (499)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHH-hccchHHHHHHHHh
Confidence 45889999999999999999999999998 57899999875543
No 69
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.34 E-value=0.015 Score=50.15 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=32.8
Q ss_pred ccccCCchHHHHHHHhCC-ChhhhHHHHhccHHHHHHhcc
Q 018439 16 TWSKETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS 54 (356)
Q Consensus 16 ~~~~~~~peil~~If~~L-~~~~~~~~~~v~~~w~~~~~~ 54 (356)
+|. ++|+|+|..|..+| ..-|+++++.||+.||.++..
T Consensus 3 ~Ws-~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWS-TLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred Chh-hCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 585 56669999999999 578999999999999998654
No 70
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.28 E-value=0.0098 Score=48.98 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCch-HHHHHHHhC-----CChhhhHHHHhccHHHHHHhccCCCcceEecc
Q 018439 20 ETVP-KVIRIMSTR-----LSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (356)
Q Consensus 20 ~~~p-eil~~If~~-----L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l 64 (356)
..+| |||..||.. ++.+++.+++.|||.|+.. +.+|.+|+..-+
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~-~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC-ARDPELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH-HcChHHHHHHHH
Confidence 4455 899998865 5679999999999999987 688999996533
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.15 E-value=0.021 Score=50.83 Aligned_cols=147 Identities=27% Similarity=0.357 Sum_probs=91.7
Q ss_pred CccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCC
Q 018439 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194 (356)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 194 (356)
+|+.|++++. .+. .+..-...+++|+.|++.++ .+++.. ......++|+.|.+++. .+.+ ++........|
T Consensus 141 nL~~L~l~~N-~i~--~l~~~~~~l~~L~~L~l~~N-~l~~l~--~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L 211 (394)
T COG4886 141 NLKELDLSDN-KIE--SLPSPLRNLPNLKNLDLSFN-DLSDLP--KLLSNLSNLNNLDLSGN-KISD--LPPEIELLSAL 211 (394)
T ss_pred hccccccccc-chh--hhhhhhhccccccccccCCc-hhhhhh--hhhhhhhhhhheeccCC-cccc--Cchhhhhhhhh
Confidence 8999999885 233 22123467899999999988 554432 22225689999999984 4443 33332334458
Q ss_pred cEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEe
Q 018439 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLN 274 (356)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 274 (356)
++|.+++...+. .......+.++..+.+.+. .+.+ ....+..+++++.|++.++ .+++... ++...++++|+
T Consensus 212 ~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~n-~~~~-~~~~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 212 EELDLSNNSIIE---LLSSLSNLKNLSGLELSNN-KLED-LPESIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELD 283 (394)
T ss_pred hhhhhcCCccee---cchhhhhcccccccccCCc-eeee-ccchhccccccceeccccc-ccccccc--ccccCccCEEe
Confidence 899888742222 2223445666666665542 2211 1344567778999999988 4543322 67788899999
Q ss_pred cCCC
Q 018439 275 LTWC 278 (356)
Q Consensus 275 l~~~ 278 (356)
+++.
T Consensus 284 ~s~n 287 (394)
T COG4886 284 LSGN 287 (394)
T ss_pred ccCc
Confidence 9874
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.76 E-value=0.015 Score=49.87 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=67.9
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhh-cCCCCcEEecCCCCCCCHHHHHH
Q 018439 210 LQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIA-KCKNLVSLNLTWCVRITDVGVMA 288 (356)
Q Consensus 210 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~ 288 (356)
++..++.+++|..|+++++ .-.......+.+..|+.++++.+. +. .++... ....++.+-.++ +++.......
T Consensus 427 v~~~l~~l~kLt~L~L~NN--~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr--~lP~~~y~lq~lEtllas~-nqi~~vd~~~ 500 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNN--LLNDLPEEMGSLVRLQTLNLSFNR-FR--MLPECLYELQTLETLLASN-NQIGSVDPSG 500 (565)
T ss_pred chHHHHhhhcceeeecccc--hhhhcchhhhhhhhhheecccccc-cc--cchHHHhhHHHHHHHHhcc-ccccccChHH
Confidence 5566788999999999883 233445556667789999999883 22 111111 122344444443 3444333332
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCC
Q 018439 289 IAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVG 333 (356)
Q Consensus 289 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~ 333 (356)
+. ++.+|..|++.++. +. .+......|- +|++|.++|.+-
T Consensus 501 l~-nm~nL~tLDL~nNd-lq--~IPp~Lgnmt-nL~hLeL~gNpf 540 (565)
T KOG0472|consen 501 LK-NMRNLTTLDLQNND-LQ--QIPPILGNMT-NLRHLELDGNPF 540 (565)
T ss_pred hh-hhhhcceeccCCCc-hh--hCChhhcccc-ceeEEEecCCcc
Confidence 22 36789999998763 11 2222333444 999999999863
No 73
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.60 E-value=0.047 Score=31.10 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=6.6
Q ss_pred hccCCCCCEEecCCC
Q 018439 239 ISLLAHLKFLDLCGA 253 (356)
Q Consensus 239 l~~~~~L~~L~l~~~ 253 (356)
+.++++|+.|+++++
T Consensus 20 l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 20 LSNLPNLETLNLSNN 34 (44)
T ss_dssp GTTCTTSSEEEETSS
T ss_pred HhCCCCCCEEEecCC
Confidence 334444444444444
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.42 E-value=0.02 Score=44.34 Aligned_cols=106 Identities=21% Similarity=0.126 Sum_probs=51.3
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcE
Q 018439 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (356)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (356)
+...++++++ .+.. ...+..++.|..|.+++ +.+.......-..+++|+.|.+.++....-..+..++.||+|++
T Consensus 43 ~~d~iDLtdN-dl~~---l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRK---LDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceeccccc-chhh---cccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4555666653 2221 11234466777777766 34433222222245667777777763222223455566777777
Q ss_pred EecCCCCCCCHHHHH-HHHhcCCCCCEEEecC
Q 018439 273 LNLTWCVRITDVGVM-AIAEGCSSLEFLSLFG 303 (356)
Q Consensus 273 L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~ 303 (356)
|.+-+++.-...... .+...+|+|+.|++.+
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 766554211111111 1122356666666654
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.20 E-value=0.049 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=6.7
Q ss_pred CCCEEEecCCCCCCHHHHHH
Q 018439 295 SLEFLSLFGIVGVTDKCLEV 314 (356)
Q Consensus 295 ~L~~L~l~~~~~~~~~~~~~ 314 (356)
+|++|++++| .+++.++..
T Consensus 3 ~L~~L~l~~n-~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNN-QITDEGASA 21 (24)
T ss_dssp T-SEEE-TSS-BEHHHHHHH
T ss_pred CCCEEEccCC-cCCHHHHHH
Confidence 3444444443 244444333
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.52 E-value=0.07 Score=25.71 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=7.1
Q ss_pred CCCEEecCCCCCCchHHHHH
Q 018439 244 HLKFLDLCGAQNLSDEGLAC 263 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~ 263 (356)
+|++|+|++| .+++.++..
T Consensus 3 ~L~~L~l~~n-~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNN-QITDEGASA 21 (24)
T ss_dssp T-SEEE-TSS-BEHHHHHHH
T ss_pred CCCEEEccCC-cCCHHHHHH
Confidence 4444444444 244444433
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.62 E-value=0.077 Score=38.57 Aligned_cols=61 Identities=26% Similarity=0.233 Sum_probs=30.1
Q ss_pred hcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
.....|+..+++++ .+.+-.......++.++.+++.++ .+++...+ ++.++.|+.|+++++
T Consensus 50 ~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 50 SKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFN 110 (177)
T ss_pred hCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccC
Confidence 33445555566552 221111111224556666666666 44444333 666666666666654
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=91.32 E-value=0.37 Score=43.44 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=16.6
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhc-CCCCcEEecCC
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTW 277 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~ 277 (356)
+.+.+..++++++.-..-+++..++. .|+|+.|+|++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 44555555555553222223333332 45555555554
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.87 E-value=0.2 Score=36.47 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=53.0
Q ss_pred cCcEEeccCCCCCC-HHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCC
Q 018439 167 HIIDLNLSGCKNLL-DKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (356)
Q Consensus 167 ~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (356)
.+..+++++|.-+- ...+..+.+ ...|+..+++++ .+.+ .-..+...++.++.|++.+ +.+.+ ....++.++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisd-vPeE~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISD-VPEELAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhC-CceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhh-chHHHhhhHHh
Confidence 45556666663221 112333333 455666677763 3321 1123344566777777776 34433 33346677788
Q ss_pred CEEecCCCCCCchHHHHHhhcCCCCcEEecCC
Q 018439 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTW 277 (356)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 277 (356)
+.+++..++ +.. ....+..+.++-.|+..+
T Consensus 103 r~lNl~~N~-l~~-~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 103 RSLNLRFNP-LNA-EPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred hhcccccCc-ccc-chHHHHHHHhHHHhcCCC
Confidence 888887774 321 122333345555665554
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.65 E-value=0.88 Score=22.85 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=3.3
Q ss_pred CcEEecCC
Q 018439 270 LVSLNLTW 277 (356)
Q Consensus 270 L~~L~l~~ 277 (356)
|++|+|++
T Consensus 4 L~~LdL~~ 11 (28)
T smart00368 4 LRELDLSN 11 (28)
T ss_pred cCEEECCC
Confidence 34444443
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.26 E-value=0.98 Score=40.86 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=56.8
Q ss_pred cccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecC--CccCHHHHHHHHHhCCcCcEEeccCCCCCC-----HH
Q 018439 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN--VRVTDIGIQHLVKNCKHIIDLNLSGCKNLL-----DK 182 (356)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-----~~ 182 (356)
..+++.+..++++++.-..-+.+..+....|+|+.|+|+++ ..-+...+..+ +...|++|.+.|.+-.+ .+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHH
Confidence 55678888888888765666677778888888888888876 22233333333 23567888888743221 23
Q ss_pred HHHHHHHhCCCCcEEe
Q 018439 183 SLQLIADNYQELESLN 198 (356)
Q Consensus 183 ~~~~~~~~~~~L~~L~ 198 (356)
.+..+...+|+|..|+
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 3455566678887775
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.27 E-value=0.25 Score=45.46 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=38.0
Q ss_pred cccccCCch-HHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEe
Q 018439 15 ETWSKETVP-KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62 (356)
Q Consensus 15 ~~~~~~~~p-eil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l 62 (356)
.++. ..+| |+-..||.+|+.+++..+++||+.|+.+...+...|+..
T Consensus 105 ~dfi-~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~ 152 (537)
T KOG0274|consen 105 RDFL-SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMC 152 (537)
T ss_pred cchh-hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhh
Confidence 3444 5566 999999999999999999999999999866666666543
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.63 E-value=0.3 Score=43.80 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=58.3
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCC
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (356)
.+.+|+.|++.+. .+.. +......+++|++|++++ +.++. +. -+..++.|+.|++.++. +. .+..+..++
T Consensus 93 ~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~--i~-~l~~l~~L~~L~l~~N~-i~--~~~~~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITK--LE-GLSTLTLLKELNLSGNL-IS--DISGLESLK 162 (414)
T ss_pred cccceeeeecccc-chhh--cccchhhhhcchheeccc-ccccc--cc-chhhccchhhheeccCc-ch--hccCCccch
Confidence 4577777877763 3332 333234577888888887 45543 11 13345567778887742 21 122333466
Q ss_pred CCCEEecCCCCCCchHHH-HHhhcCCCCcEEecCCC
Q 018439 244 HLKFLDLCGAQNLSDEGL-ACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 278 (356)
.|+.++++++. +.+... . +..+.+++.+.+.++
T Consensus 163 ~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 163 SLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence 77777777773 332221 1 455677777777764
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.48 E-value=0.27 Score=44.06 Aligned_cols=107 Identities=26% Similarity=0.307 Sum_probs=68.0
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhc
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (356)
..+.+|+.|++.++ .+.. +......+++|++|++++ +.++. +..+.. ++.|+.|++.++ .++. +. -+..
T Consensus 92 ~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~--i~~l~~-l~~L~~L~l~~N-~i~~--~~-~~~~ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITK--LEGLST-LTLLKELNLSGN-LISD--IS-GLES 160 (414)
T ss_pred ccccceeeeecccc-chhh--cccchhhhhcchheeccc-ccccc--ccchhh-ccchhhheeccC-cchh--cc-CCcc
Confidence 45688889988876 3332 222235689999999998 45554 333333 566999999884 4543 11 1233
Q ss_pred CCCCcEEEcCCCCCCChHHH-HHhccCCCCCEEecCCCCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAY-KKISLLAHLKFLDLCGAQNL 256 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 256 (356)
++.|+.++++++ .+..... . +..+.+++.+.+.++...
T Consensus 161 l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 161 LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 788888899884 3322211 1 456778888989888533
No 85
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=77.50 E-value=1.8 Score=21.29 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=13.1
Q ss_pred ccEEecCCCCCccHHHHHHHHhhCC
Q 018439 323 LTTLDVNGCVGIKQRSRDELLQLFP 347 (356)
Q Consensus 323 L~~L~l~~c~~~~~~~~~~~~~~~p 347 (356)
|++|.+.......+..++.+...||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5556655543333445566665554
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.59 E-value=1.8 Score=18.73 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=6.7
Q ss_pred cccEEecCCCC
Q 018439 322 TLTTLDVNGCV 332 (356)
Q Consensus 322 ~L~~L~l~~c~ 332 (356)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 67777777775
No 87
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=72.33 E-value=0.54 Score=42.72 Aligned_cols=128 Identities=20% Similarity=0.137 Sum_probs=61.4
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCC
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (356)
++..|+.|+++.. ++.. +..-+..+ -|+.|.+++ ++++. ++.-++..+.|..|+.+.|... .....++.+.
T Consensus 119 ~L~~lt~l~ls~N-qlS~--lp~~lC~l-pLkvli~sN-Nkl~~--lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~ 189 (722)
T KOG0532|consen 119 NLEALTFLDLSSN-QLSH--LPDGLCDL-PLKVLIVSN-NKLTS--LPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLT 189 (722)
T ss_pred hhhHHHHhhhccc-hhhc--CChhhhcC-cceeEEEec-Ccccc--CCcccccchhHHHhhhhhhhhh--hchHHhhhHH
Confidence 4455666666552 3322 11112223 366676666 34432 1112234566667777664322 2334455556
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVG 306 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (356)
+|+.|.+..+. +.+ ....+..+ .|..||++. +.+....+. +..+.+|+.|-+.+++.
T Consensus 190 slr~l~vrRn~-l~~-lp~El~~L-pLi~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 190 SLRDLNVRRNH-LED-LPEELCSL-PLIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHHhhhh-hhh-CCHHHhCC-ceeeeeccc-Cceeecchh--hhhhhhheeeeeccCCC
Confidence 66666666552 211 11223322 366777763 455533221 22356777777776653
No 88
>PF12586 DUF3760: Protein of unknown function (DUF3760); InterPro: IPR022235 This domain family is found in eukaryotes, and is typically between 46 and 64 amino acids in length.
Probab=70.15 E-value=2.1 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEecc
Q 018439 24 KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (356)
Q Consensus 24 eil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l 64 (356)
+|...|+.+|..-....+.++||..++. --|.+++++.+
T Consensus 7 ~v~~lI~~~l~~i~P~t~l~lSr~~yk~--iiP~iYr~v~~ 45 (46)
T PF12586_consen 7 PVHDLILDELSRIRPLTYLRLSRYHYKR--IIPIIYRHVTI 45 (46)
T ss_pred hHHHHHHHHHHhcCChhheeeeHHHhhh--hhhhhhheeec
Confidence 6888888888777779999999998875 35677776643
No 89
>PF13013 F-box-like_2: F-box-like domain
Probab=66.44 E-value=7 Score=27.38 Aligned_cols=27 Identities=4% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCchHHHHHHHhCCChhhhHHHHhccH
Q 018439 20 ETVPKVIRIMSTRLSQRDIISLLLVSP 46 (356)
Q Consensus 20 ~~~peil~~If~~L~~~~~~~~~~v~~ 46 (356)
++|.|++..||.+-...++..+...|+
T Consensus 24 DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 24 DLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 344499999999999999988888887
No 90
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=58.53 E-value=8.6 Score=26.28 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=20.2
Q ss_pred cccccCCchHHHHHHHhCCChhhhHHH
Q 018439 15 ETWSKETVPKVIRIMSTRLSQRDIISL 41 (356)
Q Consensus 15 ~~~~~~~~peil~~If~~L~~~~~~~~ 41 (356)
.-|. .+|+|+-..|+++|+..|+..+
T Consensus 70 ~~w~-~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWN-ILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred Cchh-hCCHHHHHHHHHcCCHHHHHHH
Confidence 4583 3444999999999999998654
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=55.74 E-value=7.3 Score=18.04 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=9.5
Q ss_pred cccEEecCCCCCcc
Q 018439 322 TLTTLDVNGCVGIK 335 (356)
Q Consensus 322 ~L~~L~l~~c~~~~ 335 (356)
+|++|++++| .++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 5788888888 344
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=40.51 E-value=10 Score=27.20 Aligned_cols=10 Identities=10% Similarity=0.637 Sum_probs=3.5
Q ss_pred CCcCcEEecc
Q 018439 165 CKHIIDLNLS 174 (356)
Q Consensus 165 ~~~L~~L~l~ 174 (356)
+.+|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 4455555544
No 93
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.67 E-value=1e+02 Score=26.62 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=14.6
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCChHHHHH
Q 018439 183 SLQLIADNYQELESLNLTRCVKLTDGGLQK 212 (356)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 212 (356)
.+..+-.+-|.|+...+.+...++...+..
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~ 218 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQ 218 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHH
Confidence 344444444566666555544444443333
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=34.30 E-value=37 Score=16.19 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.8
Q ss_pred CcEEecC
Q 018439 270 LVSLNLT 276 (356)
Q Consensus 270 L~~L~l~ 276 (356)
|++|+++
T Consensus 4 L~~L~L~ 10 (26)
T smart00370 4 LRELDLS 10 (26)
T ss_pred CCEEECC
Confidence 3344433
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=34.30 E-value=37 Score=16.19 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=2.8
Q ss_pred CcEEecC
Q 018439 270 LVSLNLT 276 (356)
Q Consensus 270 L~~L~l~ 276 (356)
|++|+++
T Consensus 4 L~~L~L~ 10 (26)
T smart00369 4 LRELDLS 10 (26)
T ss_pred CCEEECC
Confidence 3344433
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=32.73 E-value=1.6e+02 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=12.1
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHh
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILI 215 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~ 215 (356)
++.|++|++.+ +.++..++.+++.
T Consensus 254 n~sl~slnves-nFItg~gi~a~~~ 277 (353)
T KOG3735|consen 254 NKSLTSLNVES-NFITGLGIMALLR 277 (353)
T ss_pred cchhhheeccc-cccccHHHHHHHH
Confidence 45555555555 3555444444443
No 97
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=26.96 E-value=56 Score=16.13 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=7.4
Q ss_pred HHhCCCccEEEee
Q 018439 136 SSTCPELKVFSIY 148 (356)
Q Consensus 136 ~~~~~~L~~L~l~ 148 (356)
...+|+|+.|+..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 3456666666543
No 98
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.67 E-value=31 Score=28.47 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=32.5
Q ss_pred ch-HHHHHHHhCCC-hhhhHHHHhccHHHHHHhccCCCcceEe
Q 018439 22 VP-KVIRIMSTRLS-QRDIISLLLVSPWLHRTLVSYPSLWLVI 62 (356)
Q Consensus 22 ~p-eil~~If~~L~-~~~~~~~~~v~~~w~~~~~~~~~l~~~l 62 (356)
+| |++..|+.+++ -+|+..+++|-.....+. ....+|+++
T Consensus 205 LP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~-~e~~iWkkL 246 (332)
T KOG3926|consen 205 LPLECVLNILLRLSDHRDLESLAQAWETLAKLS-EERRIWKKL 246 (332)
T ss_pred chHHHHHHHHHHccCcchHHHHHHhhHHHHHHH-HHHHHHHHH
Confidence 56 89999998885 799999999988887764 467788865
No 99
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=24.50 E-value=49 Score=23.60 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=3.3
Q ss_pred HhCCcCcE
Q 018439 163 KNCKHIID 170 (356)
Q Consensus 163 ~~~~~L~~ 170 (356)
..++.|..
T Consensus 58 ~~~~~l~~ 65 (120)
T PF03382_consen 58 AGCSSLNQ 65 (120)
T ss_pred hhhhhcCC
Confidence 33444444
No 100
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=24.36 E-value=1.8e+02 Score=17.96 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=4.8
Q ss_pred CCcceEeee
Q 018439 346 FPHLMCFKV 354 (356)
Q Consensus 346 ~p~L~~l~l 354 (356)
.|+|+.+.+
T Consensus 61 ~~~Le~l~i 69 (70)
T PF07735_consen 61 NPRLEYLEI 69 (70)
T ss_pred CcCCcEEEE
Confidence 455555544
No 101
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=22.41 E-value=14 Score=34.16 Aligned_cols=126 Identities=21% Similarity=0.206 Sum_probs=62.6
Q ss_pred CccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 018439 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL 220 (356)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 220 (356)
-|+.|.++++ +++.-.. . ++..+.|..|+.+.++.. .+..=...+.+|+.|.+.++ .+.. ++.-+. .-.|
T Consensus 144 pLkvli~sNN-kl~~lp~-~-ig~~~tl~~ld~s~nei~---slpsql~~l~slr~l~vrRn-~l~~--lp~El~-~LpL 213 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPE-E-IGLLPTLAHLDVSKNEIQ---SLPSQLGYLTSLRDLNVRRN-HLED--LPEELC-SLPL 213 (722)
T ss_pred cceeEEEecC-ccccCCc-c-cccchhHHHhhhhhhhhh---hchHHhhhHHHHHHHHHhhh-hhhh--CCHHHh-CCce
Confidence 4677777665 3332111 1 123456667776664321 12222223456666666652 3221 222222 3356
Q ss_pred cEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCch-HHHHHhhcCCCCcEEecCCC
Q 018439 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD-EGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 278 (356)
..|++++ +.+. .....+.++.+|++|.|.+++--++ ..+..-+...=.++|++.-|
T Consensus 214 i~lDfSc-Nkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSC-NKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccc-Ccee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 7788876 3332 2334456778888888888853332 22222233334567777665
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=21.27 E-value=1e+02 Score=15.11 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=4.4
Q ss_pred CCCEEecCCC
Q 018439 244 HLKFLDLCGA 253 (356)
Q Consensus 244 ~L~~L~l~~~ 253 (356)
+|+.|+++++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00365 3 NLEELDLSQN 12 (26)
T ss_pred ccCEEECCCC
Confidence 3444444443
Done!