Query 018439
Match_columns 356
No_of_seqs 229 out of 3108
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 15:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 3.1E-32 1E-36 235.0 22.6 296 13-331 5-303 (336)
2 2p1m_B Transport inhibitor res 100.0 5.2E-30 1.8E-34 237.8 27.8 173 20-202 8-221 (594)
3 3ogk_B Coronatine-insensitive 100.0 1.4E-28 4.7E-33 228.2 24.9 173 20-202 15-230 (592)
4 2p1m_B Transport inhibitor res 99.9 1.3E-21 4.3E-26 181.5 30.5 232 113-354 288-538 (594)
5 3ogk_B Coronatine-insensitive 99.9 5E-22 1.7E-26 184.2 27.4 212 137-355 290-521 (592)
6 1z7x_W Ribonuclease inhibitor; 99.9 4.2E-19 1.4E-23 159.4 28.2 295 48-355 20-349 (461)
7 2ast_B S-phase kinase-associat 99.9 4.5E-20 1.5E-24 158.8 20.7 216 81-309 90-307 (336)
8 1z7x_W Ribonuclease inhibitor; 99.9 8.9E-19 3.1E-23 157.3 29.5 93 81-176 110-209 (461)
9 2ca6_A RAN GTPase-activating p 99.8 3E-18 1E-22 150.1 26.2 261 81-351 29-334 (386)
10 2ca6_A RAN GTPase-activating p 99.8 7.8E-17 2.7E-21 141.2 25.6 250 97-355 16-311 (386)
11 3goz_A Leucine-rich repeat-con 99.7 7.2E-16 2.5E-20 133.7 15.5 241 83-332 21-295 (362)
12 3goz_A Leucine-rich repeat-con 99.6 3.9E-15 1.3E-19 129.1 16.4 236 111-355 19-292 (362)
13 4fmz_A Internalin; leucine ric 99.6 1.7E-15 5.9E-20 130.7 13.4 236 81-355 85-341 (347)
14 4fmz_A Internalin; leucine ric 99.6 9E-15 3.1E-19 126.2 15.7 254 60-355 47-319 (347)
15 3e4g_A ATP synthase subunit S, 99.6 1.9E-15 6.4E-20 114.3 6.9 106 243-351 61-171 (176)
16 3v47_A TOLL-like receptor 5B a 99.5 5.1E-16 1.8E-20 139.1 0.3 38 240-278 296-333 (455)
17 3un9_A NLR family member X1; l 99.5 6.8E-13 2.3E-17 114.8 19.3 170 114-290 72-260 (372)
18 3rgz_A Protein brassinosteroid 99.5 2.7E-16 9.3E-21 149.6 -7.1 227 111-355 123-351 (768)
19 3v47_A TOLL-like receptor 5B a 99.5 5.6E-15 1.9E-19 132.4 1.5 132 192-332 275-406 (455)
20 3un9_A NLR family member X1; l 99.5 6.1E-12 2.1E-16 108.8 20.0 144 167-316 102-260 (372)
21 4fcg_A Uncharacterized protein 99.5 4.4E-16 1.5E-20 133.0 -6.9 223 82-330 79-310 (328)
22 1o6v_A Internalin A; bacterial 99.4 2E-13 6.9E-18 122.5 9.2 232 81-355 87-339 (466)
23 3e4g_A ATP synthase subunit S, 99.4 2E-13 6.8E-18 103.2 7.7 92 219-312 62-157 (176)
24 3t6q_A CD180 antigen; protein- 99.4 1.7E-15 5.8E-20 140.7 -4.7 11 322-332 548-558 (606)
25 3rgz_A Protein brassinosteroid 99.4 9E-16 3.1E-20 146.0 -6.8 177 112-304 149-328 (768)
26 1ozn_A Reticulon 4 receptor; N 99.4 3.3E-15 1.1E-19 125.2 -3.2 206 83-305 31-236 (285)
27 2z66_A Variable lymphocyte rec 99.4 5.8E-17 2E-21 137.4 -14.4 232 83-333 27-260 (306)
28 2z80_A TOLL-like receptor 2, v 99.4 1.4E-14 4.8E-19 125.2 -0.5 181 83-279 51-233 (353)
29 1o6v_A Internalin A; bacterial 99.4 4.2E-12 1.4E-16 113.9 14.0 209 112-355 175-383 (466)
30 1xku_A Decorin; proteoglycan, 99.4 3E-14 1E-18 122.0 -0.4 250 81-355 73-327 (330)
31 2id5_A Lingo-1, leucine rich r 99.4 1.2E-14 4.2E-19 130.9 -3.1 252 81-355 53-304 (477)
32 2z80_A TOLL-like receptor 2, v 99.4 9.9E-15 3.4E-19 126.2 -3.7 238 80-335 72-315 (353)
33 2z81_A CD282 antigen, TOLL-lik 99.4 2.2E-13 7.6E-18 124.9 4.6 62 292-355 332-395 (549)
34 3zyi_A Leucine-rich repeat-con 99.4 1.6E-14 5.5E-19 129.1 -3.6 228 83-332 74-301 (452)
35 3o53_A Protein LRIM1, AGAP0063 99.4 2.1E-14 7.2E-19 122.1 -2.7 237 82-354 32-269 (317)
36 4fcg_A Uncharacterized protein 99.4 7.5E-15 2.6E-19 125.4 -5.6 222 112-355 79-309 (328)
37 3o6n_A APL1; leucine-rich repe 99.4 6.7E-14 2.3E-18 122.7 -0.2 62 239-304 244-305 (390)
38 3zyj_A Leucine-rich repeat-con 99.3 2.1E-14 7.3E-19 127.9 -3.5 228 83-332 63-290 (440)
39 3oja_B Anopheles plasmodium-re 99.3 7E-14 2.4E-18 129.3 -0.5 104 238-354 249-352 (597)
40 2id5_A Lingo-1, leucine rich r 99.3 3.3E-14 1.1E-18 128.1 -2.7 232 81-332 77-331 (477)
41 3vq2_A TLR4, TOLL-like recepto 99.3 5.8E-15 2E-19 137.1 -8.0 179 163-355 373-553 (606)
42 1h6u_A Internalin H; cell adhe 99.3 1.1E-12 3.8E-17 110.9 6.5 188 83-304 40-227 (308)
43 3t6q_A CD180 antigen; protein- 99.3 2.4E-14 8.1E-19 133.0 -4.2 254 81-355 298-555 (606)
44 3vq2_A TLR4, TOLL-like recepto 99.3 8.7E-15 3E-19 135.9 -7.2 231 83-335 327-559 (606)
45 3o6n_A APL1; leucine-rich repe 99.3 5.5E-14 1.9E-18 123.3 -1.7 243 83-355 68-326 (390)
46 3o53_A Protein LRIM1, AGAP0063 99.3 4.9E-14 1.7E-18 119.9 -2.2 215 110-355 30-245 (317)
47 3zyj_A Leucine-rich repeat-con 99.3 1.1E-14 3.8E-19 129.7 -6.6 224 114-355 64-287 (440)
48 3zyi_A Leucine-rich repeat-con 99.3 1.7E-14 5.7E-19 129.0 -5.6 224 114-355 75-298 (452)
49 2z7x_B TOLL-like receptor 1, v 99.3 9.7E-13 3.3E-17 119.8 5.9 127 216-354 322-451 (520)
50 1ozn_A Reticulon 4 receptor; N 99.3 2.6E-13 8.9E-18 113.6 1.8 208 113-334 31-238 (285)
51 3bz5_A Internalin-J, INLJ; leu 99.3 8.1E-13 2.8E-17 117.8 4.5 245 60-355 45-294 (457)
52 1wwl_A Monocyte differentiatio 99.3 3E-14 1E-18 120.9 -4.6 201 138-355 93-304 (312)
53 2z81_A CD282 antigen, TOLL-lik 99.3 3E-12 1E-16 117.3 8.1 63 266-331 332-397 (549)
54 3oja_A Leucine-rich immune mol 99.3 7.8E-14 2.7E-18 125.5 -2.7 236 82-353 32-268 (487)
55 4glp_A Monocyte differentiatio 99.3 1.6E-13 5.6E-18 116.2 -0.8 228 84-332 64-305 (310)
56 1h6u_A Internalin H; cell adhe 99.3 5.5E-12 1.9E-16 106.6 8.3 188 114-332 41-228 (308)
57 2z66_A Variable lymphocyte rec 99.3 1.2E-14 4E-19 123.2 -8.3 208 81-305 49-259 (306)
58 4eco_A Uncharacterized protein 99.3 1E-13 3.4E-18 129.1 -3.3 131 82-227 247-386 (636)
59 3oja_B Anopheles plasmodium-re 99.3 1.8E-13 6E-18 126.6 -1.7 243 83-355 74-332 (597)
60 4ecn_A Leucine-rich repeat pro 99.3 2.3E-13 8E-18 129.4 -1.1 13 82-94 489-501 (876)
61 4ecn_A Leucine-rich repeat pro 99.3 3.6E-13 1.2E-17 128.2 -0.2 252 81-355 512-784 (876)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.1E-13 1.1E-17 124.2 -1.0 61 216-278 351-413 (562)
63 2z7x_B TOLL-like receptor 1, v 99.3 5.2E-12 1.8E-16 115.0 6.8 157 164-333 322-480 (520)
64 1xku_A Decorin; proteoglycan, 99.3 4.9E-13 1.7E-17 114.4 0.1 223 83-332 51-274 (330)
65 3oja_A Leucine-rich immune mol 99.3 1.2E-13 4.1E-18 124.3 -4.0 214 111-355 31-245 (487)
66 2ft3_A Biglycan; proteoglycan, 99.3 1.8E-14 6.2E-19 123.4 -9.1 201 140-355 123-328 (332)
67 3bz5_A Internalin-J, INLJ; leu 99.2 2.8E-12 9.5E-17 114.4 4.0 223 81-354 39-261 (457)
68 2z63_A TOLL-like receptor 4, v 99.2 3.6E-14 1.2E-18 130.8 -8.9 183 138-332 345-529 (570)
69 4glp_A Monocyte differentiatio 99.2 4.7E-13 1.6E-17 113.4 -1.4 224 114-355 64-302 (310)
70 1wwl_A Monocyte differentiatio 99.2 2.1E-13 7E-18 115.7 -3.7 203 112-332 93-307 (312)
71 4ezg_A Putative uncharacterize 99.2 4.3E-12 1.5E-16 99.9 3.9 150 138-304 42-191 (197)
72 4eco_A Uncharacterized protein 99.2 1.2E-13 4.2E-18 128.5 -5.9 159 110-278 202-387 (636)
73 1ziw_A TOLL-like receptor 3; i 99.2 1.9E-13 6.6E-18 128.6 -4.9 38 215-253 477-514 (680)
74 4ezg_A Putative uncharacterize 99.2 7.9E-12 2.7E-16 98.4 4.9 106 190-304 64-169 (197)
75 1ogq_A PGIP-2, polygalacturona 99.2 5.9E-14 2E-18 119.1 -8.0 206 111-332 73-279 (313)
76 1ogq_A PGIP-2, polygalacturona 99.2 4.2E-14 1.4E-18 120.0 -9.1 224 114-355 50-276 (313)
77 2ra8_A Uncharacterized protein 99.2 1.9E-10 6.4E-15 98.7 11.4 161 160-332 166-341 (362)
78 2ra8_A Uncharacterized protein 99.2 8E-10 2.7E-14 94.8 15.2 219 74-305 97-341 (362)
79 1h6t_A Internalin B; cell adhe 99.2 4.4E-11 1.5E-15 100.2 6.8 100 191-304 111-210 (291)
80 3rfs_A Internalin B, repeat mo 99.2 6.7E-12 2.3E-16 104.2 1.7 175 114-304 41-215 (272)
81 1ziw_A TOLL-like receptor 3; i 99.1 2.8E-12 9.6E-17 120.7 -0.9 209 112-332 403-620 (680)
82 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 5.1E-11 1.7E-15 71.4 4.4 43 20-63 11-53 (53)
83 3rfs_A Internalin B, repeat mo 99.1 3.8E-12 1.3E-16 105.7 -0.9 178 138-332 39-216 (272)
84 3j0a_A TOLL-like receptor 5; m 99.1 8.3E-13 2.8E-17 127.0 -5.9 88 81-176 70-158 (844)
85 1h6t_A Internalin B; cell adhe 99.1 7.3E-11 2.5E-15 98.8 6.1 167 139-332 45-211 (291)
86 2z63_A TOLL-like receptor 4, v 99.1 3.7E-13 1.3E-17 124.0 -8.6 245 83-355 281-526 (570)
87 3j0a_A TOLL-like receptor 5; m 99.1 1.1E-13 3.6E-18 133.2 -12.9 276 56-355 23-346 (844)
88 2o6q_A Variable lymphocyte rec 99.1 3.2E-12 1.1E-16 106.0 -2.8 180 114-305 37-216 (270)
89 2o6q_A Variable lymphocyte rec 99.1 3.4E-12 1.2E-16 105.9 -2.8 180 84-279 37-216 (270)
90 1m9s_A Internalin B; cell inva 99.1 9.4E-11 3.2E-15 107.7 6.4 146 111-278 62-207 (605)
91 2ft3_A Biglycan; proteoglycan, 99.1 3.5E-13 1.2E-17 115.5 -9.2 244 83-355 53-302 (332)
92 1p9a_G Platelet glycoprotein I 99.1 2.8E-12 9.5E-17 107.4 -3.6 200 81-305 7-206 (290)
93 2z62_A TOLL-like receptor 4, v 99.1 1.1E-12 3.6E-17 109.4 -6.3 203 84-304 28-234 (276)
94 2z62_A TOLL-like receptor 4, v 99.1 2.3E-12 7.9E-17 107.3 -4.9 203 114-332 28-235 (276)
95 1io0_A Tropomodulin; LRR prote 99.1 1.6E-08 5.5E-13 78.4 17.2 121 209-332 27-162 (185)
96 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.4E-15 87.0 3.7 36 242-278 87-123 (149)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 7.3E-11 2.5E-15 108.4 2.7 157 164-334 351-510 (562)
98 1m9s_A Internalin B; cell inva 99.0 2.9E-10 1E-14 104.5 6.4 165 114-304 43-207 (605)
99 2xwt_C Thyrotropin receptor; s 99.0 4.1E-13 1.4E-17 109.4 -12.1 11 294-304 205-215 (239)
100 2je0_A Acidic leucine-rich nuc 99.0 2.7E-10 9.1E-15 85.3 4.1 84 216-304 40-123 (149)
101 3g06_A SSPH2 (leucine-rich rep 98.9 7.1E-10 2.4E-14 102.1 5.5 70 84-175 61-130 (622)
102 2ell_A Acidic leucine-rich nuc 98.9 1.2E-10 4E-15 89.2 0.2 39 239-278 116-157 (168)
103 1p9a_G Platelet glycoprotein I 98.9 6.3E-11 2.2E-15 99.1 -1.6 177 83-279 30-206 (290)
104 1io0_A Tropomodulin; LRR prote 98.9 9.7E-08 3.3E-12 73.9 16.4 124 184-311 28-167 (185)
105 3m19_A Variable lymphocyte rec 98.9 9.8E-11 3.4E-15 95.9 -1.7 85 216-304 105-189 (251)
106 1xeu_A Internalin C; cellular 98.8 1.1E-09 3.9E-14 90.1 3.3 142 114-278 41-182 (263)
107 3m19_A Variable lymphocyte rec 98.8 1.7E-10 5.9E-15 94.5 -1.9 134 190-332 57-190 (251)
108 2xwt_C Thyrotropin receptor; s 98.8 1.2E-11 4.1E-16 100.6 -9.1 201 84-305 31-237 (239)
109 2ell_A Acidic leucine-rich nuc 98.8 4.6E-10 1.6E-14 85.8 0.1 63 240-304 68-130 (168)
110 3g06_A SSPH2 (leucine-rich rep 98.8 2.4E-09 8.2E-14 98.6 4.3 73 82-176 79-151 (622)
111 1xeu_A Internalin C; cellular 98.8 3.6E-09 1.2E-13 87.1 4.7 145 137-304 38-182 (263)
112 1dce_A Protein (RAB geranylger 98.7 4.8E-10 1.6E-14 102.4 -2.2 125 192-328 441-567 (567)
113 1dce_A Protein (RAB geranylger 98.6 9.7E-10 3.3E-14 100.4 -3.5 125 218-354 441-567 (567)
114 4g8a_A TOLL-like receptor 4; l 98.6 1.3E-10 4.5E-15 108.3 -10.0 184 138-332 395-578 (635)
115 2o6s_A Variable lymphocyte rec 98.6 1.5E-09 5.2E-14 86.1 -2.5 61 216-278 98-158 (208)
116 2xot_A Amphoterin-induced prot 98.6 4.4E-09 1.5E-13 90.9 -0.1 132 140-278 39-173 (361)
117 1a9n_A U2A', U2A'; complex (nu 98.6 3E-08 1E-12 76.3 4.4 15 264-278 109-123 (176)
118 1a9n_A U2A', U2A'; complex (nu 98.6 1.2E-08 4.3E-13 78.4 2.2 132 191-332 18-151 (176)
119 1jl5_A Outer protein YOPM; leu 98.6 2.7E-08 9.1E-13 88.6 4.5 136 114-278 111-247 (454)
120 2o6s_A Variable lymphocyte rec 98.6 2.3E-09 7.7E-14 85.1 -2.3 133 165-305 27-159 (208)
121 1pgv_A TMD-1, tropomodulin TMD 98.6 6.6E-06 2.3E-10 63.3 16.4 123 208-332 31-168 (197)
122 1jl5_A Outer protein YOPM; leu 98.6 8E-08 2.7E-12 85.5 6.5 117 114-253 131-247 (454)
123 2xot_A Amphoterin-induced prot 98.6 4.6E-09 1.6E-13 90.8 -1.5 161 114-283 39-204 (361)
124 2v70_A SLIT-2, SLIT homolog 2 98.5 3.3E-09 1.1E-13 84.9 -2.4 133 166-305 32-164 (220)
125 2v70_A SLIT-2, SLIT homolog 2 98.5 6E-09 2.1E-13 83.3 -0.9 111 163-279 54-164 (220)
126 2v9t_B SLIT homolog 2 protein 98.5 5.7E-09 2E-13 83.4 -1.8 132 166-305 32-163 (220)
127 2v9t_B SLIT homolog 2 protein 98.5 8.1E-09 2.8E-13 82.6 -1.2 85 191-279 79-163 (220)
128 4g8a_A TOLL-like receptor 4; l 98.5 9.7E-10 3.3E-14 102.4 -8.1 183 113-306 396-579 (635)
129 3e6j_A Variable lymphocyte rec 98.5 2E-08 6.8E-13 80.8 0.1 131 166-305 40-170 (229)
130 1ds9_A Outer arm dynein; leuci 98.5 3.3E-08 1.1E-12 77.6 1.1 35 137-175 45-79 (198)
131 3cvr_A Invasion plasmid antige 98.4 1E-07 3.6E-12 86.7 4.3 188 84-316 59-251 (571)
132 3cvr_A Invasion plasmid antige 98.4 6.5E-08 2.2E-12 88.1 1.9 185 114-337 59-245 (571)
133 3e6j_A Variable lymphocyte rec 98.4 3.2E-08 1.1E-12 79.6 -0.2 84 191-279 87-170 (229)
134 1ds9_A Outer arm dynein; leuci 98.3 3.4E-08 1.2E-12 77.5 -1.2 35 163-201 45-79 (198)
135 1pgv_A TMD-1, tropomodulin TMD 98.3 3.4E-05 1.2E-09 59.4 13.8 120 183-304 32-167 (197)
136 3sb4_A Hypothetical leucine ri 98.2 5.6E-08 1.9E-12 82.8 -3.8 103 241-353 224-327 (329)
137 2wfh_A SLIT homolog 2 protein 98.2 4E-07 1.4E-11 71.0 1.4 62 240-304 75-136 (193)
138 3l2o_B F-box only protein 4; s 98.2 4.4E-07 1.5E-11 73.3 1.4 47 20-67 7-53 (312)
139 4ay9_X Follicle-stimulating ho 98.1 9.9E-10 3.4E-14 94.6 -15.8 227 83-330 29-255 (350)
140 1w8a_A SLIT protein; signaling 98.1 2.5E-07 8.6E-12 72.1 -1.2 12 190-201 52-63 (192)
141 2wfh_A SLIT homolog 2 protein 98.1 1.1E-06 3.9E-11 68.4 2.3 63 215-279 75-137 (193)
142 2e31_A FBS1, F-box only protei 98.0 1.2E-06 3.9E-11 71.8 1.7 42 20-62 53-95 (297)
143 1w8a_A SLIT protein; signaling 98.0 6.2E-07 2.1E-11 69.9 -0.8 34 141-175 30-63 (192)
144 2o6r_A Variable lymphocyte rec 98.0 1.2E-06 4E-11 67.3 0.7 87 215-305 49-135 (177)
145 2o6r_A Variable lymphocyte rec 97.9 9E-07 3.1E-11 68.0 -0.6 110 217-333 27-136 (177)
146 4b8c_D Glucose-repressible alc 97.9 1.6E-06 5.5E-11 81.7 0.6 82 216-304 245-326 (727)
147 4ay9_X Follicle-stimulating ho 97.9 3.7E-08 1.3E-12 84.7 -10.0 206 80-303 50-255 (350)
148 3sb4_A Hypothetical leucine ri 97.8 2.6E-06 9E-11 72.4 0.1 104 192-303 202-306 (329)
149 3v7d_B Cell division control p 97.8 5.2E-06 1.8E-10 74.0 1.0 51 15-65 12-62 (464)
150 4b8c_D Glucose-repressible alc 97.8 5.1E-06 1.7E-10 78.3 1.0 81 191-278 246-326 (727)
151 1p22_A F-BOX/WD-repeat protein 97.6 1.2E-05 4.1E-10 71.1 0.8 49 15-64 8-60 (435)
152 2ovr_B FBW7, F-BOX/WD repeat p 97.5 3.5E-05 1.2E-09 68.2 2.5 49 14-63 15-63 (445)
153 3g39_A Variable lymphocyte rec 97.5 2.8E-05 9.7E-10 59.0 1.3 61 241-304 52-112 (170)
154 2r9u_A Variable lymphocyte rec 97.5 2.9E-05 9.9E-10 59.2 1.3 62 240-304 54-115 (174)
155 2r9u_A Variable lymphocyte rec 97.3 6.1E-05 2.1E-09 57.4 1.8 84 192-279 33-116 (174)
156 3g39_A Variable lymphocyte rec 97.3 7.1E-05 2.4E-09 56.8 2.2 84 192-279 30-113 (170)
157 3rw6_A Nuclear RNA export fact 97.3 0.00093 3.2E-08 54.3 8.4 38 189-227 167-205 (267)
158 3rw6_A Nuclear RNA export fact 97.3 0.0005 1.7E-08 55.9 6.3 84 137-225 167-258 (267)
159 2ifg_A High affinity nerve gro 96.9 0.00017 5.9E-09 61.6 0.8 37 216-253 54-90 (347)
160 2ifg_A High affinity nerve gro 96.4 0.0012 4.1E-08 56.3 2.2 87 162-253 27-113 (347)
161 4fdw_A Leucine rich hypothetic 96.4 0.00014 4.7E-09 63.4 -3.8 59 240-304 297-355 (401)
162 4fdw_A Leucine rich hypothetic 96.3 8.8E-05 3E-09 64.7 -5.4 124 137-278 223-355 (401)
163 4gt6_A Cell surface protein; l 91.4 0.048 1.6E-06 47.3 0.7 103 190-304 263-367 (394)
164 4gt6_A Cell surface protein; l 89.0 0.2 6.9E-06 43.3 2.7 125 214-355 261-386 (394)
165 4h09_A Hypothetical leucine ri 82.5 0.23 7.8E-06 42.6 -0.3 80 215-302 237-318 (379)
166 4h09_A Hypothetical leucine ri 76.0 0.31 1.1E-05 41.7 -1.5 125 164-303 215-342 (379)
167 4fs7_A Uncharacterized protein 75.5 0.45 1.6E-05 41.0 -0.6 141 190-352 251-393 (394)
168 3rfe_A Platelet glycoprotein I 72.5 2.1 7.3E-05 30.1 2.4 35 244-279 32-66 (130)
169 4fs7_A Uncharacterized protein 69.5 1.2 4E-05 38.4 0.6 101 190-303 274-375 (394)
170 3rfe_A Platelet glycoprotein I 54.5 6.2 0.00021 27.7 2.0 13 241-253 53-65 (130)
171 2lz0_A Uncharacterized protein 23.2 21 0.00071 23.6 0.4 13 264-276 39-51 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=100.00 E-value=3.1e-32 Score=234.96 Aligned_cols=296 Identities=22% Similarity=0.316 Sum_probs=230.1
Q ss_pred hccccccCCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEeccccccchhhhHHHhhcCcccCCccEeecC
Q 018439 13 EEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLE 92 (356)
Q Consensus 13 ~~~~~~~~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~ 92 (356)
+...|. ++|+|++.+||+||+.+|+.+++.|||+|+++. .+|.+|+.++++........+ ..+ ..++++.+++.
T Consensus 5 ~~~~~~-~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~-~~~~~~~~l~l~~~~~~~~~~-~~~---~~~~l~~L~l~ 78 (336)
T 2ast_B 5 PGVSWD-SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA-SDESLWQTLDLTGKNLHPDVT-GRL---LSQGVIAFRCP 78 (336)
T ss_dssp --CCSS-SSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH-TCSTTSSEEECTTCBCCHHHH-HHH---HHTTCSEEECT
T ss_pred ccCChh-hCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-cCchhheeeccccccCCHHHH-Hhh---hhccceEEEcC
Confidence 345573 566699999999999999999999999999985 569999999998765443222 221 12678888888
Q ss_pred CCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEe
Q 018439 93 FAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLN 172 (356)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 172 (356)
++. +...... ...+++|++|+++++ .++...+......+++|++|+++++ .+++.....+ ..+++|++|+
T Consensus 79 ~n~-l~~~~~~------~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~ 148 (336)
T 2ast_B 79 RSF-MDQPLAE------HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLN 148 (336)
T ss_dssp TCE-ECSCCCS------CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEE
T ss_pred Ccc-ccccchh------hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHH-hcCCCCCEEE
Confidence 653 2111100 235689999999997 4777767778889999999999998 7887766655 4699999999
Q ss_pred ccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCC-CCcEEEcCCCC-CCChHHH-HHhccCCCCCEEe
Q 018439 173 LSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS-SLRSLNLYALS-GFTDEAY-KKISLLAHLKFLD 249 (356)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~-~~l~~~~~L~~L~ 249 (356)
++++..+++..+..+...+++|++|++++|..+++..+...+..++ +|++|++++|. .+.+..+ ..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9998678887788888889999999999966888777888888999 99999999975 4664444 3456899999999
Q ss_pred cCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecC
Q 018439 250 LCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVN 329 (356)
Q Consensus 250 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~ 329 (356)
+++|..+++..+..++.+++|++|++++|..+++.++..+. .+++|+.|++++| +++.++..+.. +++.|+++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~----~l~~L~l~ 301 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKE----ALPHLQIN 301 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHH----HSTTSEES
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHh----hCcceEEe
Confidence 99996588888888889999999999998777777664444 4899999999997 88877777764 45556666
Q ss_pred CC
Q 018439 330 GC 331 (356)
Q Consensus 330 ~c 331 (356)
++
T Consensus 302 ~n 303 (336)
T 2ast_B 302 CS 303 (336)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=5.2e-30 Score=237.82 Aligned_cols=173 Identities=21% Similarity=0.300 Sum_probs=95.0
Q ss_pred CCchHHHHHHHhCCC-hhhhHHHHhccHHHHHHhccCCCcceEeccccccchhhh-------------------------
Q 018439 20 ETVPKVIRIMSTRLS-QRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNR------------------------- 73 (356)
Q Consensus 20 ~~~peil~~If~~L~-~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~~~~~~~~------------------------- 73 (356)
++|+|||.+||+||+ .+|+.+++.|||+|+++. +..|..+++.........
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l 84 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE---RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL 84 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH---HHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh---hhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhccc
Confidence 556699999999999 999999999999999872 234555554433211110
Q ss_pred -----------HHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCc
Q 018439 74 -----------LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPEL 142 (356)
Q Consensus 74 -----------~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 142 (356)
++..+. ..+++|++|+++++. +++..+..+...+ ++|++|++++|..++..++..+...+++|
T Consensus 85 ~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~-~~~~~~~~l~~~~----~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMS-SSYTWLEEIRLKRMV-VTDDCLELIAKSF----KNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp SCTTSCCBCHHHHHHHH-HHCTTCCEEEEESCB-CCHHHHHHHHHHC----TTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred ccccccchhhHHHHHHH-HhCCCCCeEEeeCcE-EcHHHHHHHHHhC----CCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 111111 234556666666553 5555555554333 66666666666555555555555566666
Q ss_pred cEEEeecCCccCHH---HHHHHHHhCCcCcEEeccCCC-CCCHHHHHHHHHhCCCCcEEecCCC
Q 018439 143 KVFSIYWNVRVTDI---GIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRC 202 (356)
Q Consensus 143 ~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~ 202 (356)
++|++++|. +++. .+..+...+++|++|++.++. .++...+..+...+++|++|++.+|
T Consensus 159 ~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 159 KELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 666666552 2211 122222233444444444432 2444555555555666666666654
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.4e-28 Score=228.18 Aligned_cols=173 Identities=21% Similarity=0.267 Sum_probs=97.0
Q ss_pred CCchHHHHHHHhCC-ChhhhHHHHhccHHHHHHhccCCCcceEeccccccc-hhhh------------------------
Q 018439 20 ETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNN-AGNR------------------------ 73 (356)
Q Consensus 20 ~~~peil~~If~~L-~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~~~~-~~~~------------------------ 73 (356)
++|+|+|.+||+|| +.+|+.+++.|||+|+++... .+..+.+..... ....
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 91 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE---TREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL 91 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH---HCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc---cccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccc
Confidence 45558999999999 899999999999999987321 122232221110 0011
Q ss_pred -----------HHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCC-ccEEecCCCCCCCHHHHHHHHHhCCC
Q 018439 74 -----------LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQD-LESLNLNGCQKISDKGIEIISSTCPE 141 (356)
Q Consensus 74 -----------~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~ 141 (356)
+...+. ..+++|++|+++++ .+++..+..+...+ ++ |++|++++|..++..++..+...||+
T Consensus 92 ~~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~-~i~~~~~~~l~~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 165 (592)
T 3ogk_B 92 IPENWGGYVTPWVTEIS-NNLRQLKSVHFRRM-IVSDLDLDRLAKAR----ADDLETLKLDKCSGFTTDGLLSIVTHCRK 165 (592)
T ss_dssp SCTTSCCBCHHHHHHHH-HHCTTCCEEEEESC-BCCHHHHHHHHHHH----GGGCCEEEEESCEEEEHHHHHHHHHHCTT
T ss_pred ccccccccchHHHHHHH-hhCCCCCeEEeecc-EecHHHHHHHHHhc----cccCcEEECcCCCCcCHHHHHHHHhhCCC
Confidence 111110 13455666666555 34454444444332 33 66666666554555555555556666
Q ss_pred ccEEEeecCCccCHH---HHHHHHHhCCcCcEEeccCCCC--CCHHHHHHHHHhCCCCcEEecCCC
Q 018439 142 LKVFSIYWNVRVTDI---GIQHLVKNCKHIIDLNLSGCKN--LLDKSLQLIADNYQELESLNLTRC 202 (356)
Q Consensus 142 L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~ 202 (356)
|++|++.++ .+++. .+..+...+++|++|++.++.. +....+..+..++++|++|++++|
T Consensus 166 L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 166 IKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp CSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred CCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 666666655 33222 2444555566666666655321 234556666666777777777664
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.3e-21 Score=181.51 Aligned_cols=232 Identities=22% Similarity=0.307 Sum_probs=190.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEec--------cCCCCCCHHHH
Q 018439 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNL--------SGCKNLLDKSL 184 (356)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~~ 184 (356)
+++|++|+++++. +++..+..+...+++|++|++.++ +++.++..+...+++|++|++ .++..+++..+
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 3789999999885 888778777788999999999987 567778888778999999998 34567888888
Q ss_pred HHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcC-----CCCCCC----hHHHHH-hccCCCCCEEecCCCC
Q 018439 185 QLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLY-----ALSGFT----DEAYKK-ISLLAHLKFLDLCGAQ 254 (356)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~~----~~~~~~-l~~~~~L~~L~l~~~~ 254 (356)
..+...+++|++|.+.. ..+++..+..+...+++|++|++. +|..++ +..+.. +..+++|++|++++
T Consensus 365 ~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-- 441 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-- 441 (594)
T ss_dssp HHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred HHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence 88888899999996654 688888888877789999999998 556666 444444 45788999999977
Q ss_pred CCchHHHHHhhc-CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCC
Q 018439 255 NLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVG 333 (356)
Q Consensus 255 ~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~ 333 (356)
.+++.++..++. +++|++|++++| .+++.++..+...+++|++|++++|. +++.++..+...++ +|++|++++|+.
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~-~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLE-TMRSLWMSSCSV 518 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGG-GSSEEEEESSCC
T ss_pred cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCC-CCCEEeeeCCCC
Confidence 688888888877 899999999986 58888888887789999999999985 58888887776665 999999999975
Q ss_pred ccHHHHHHHHhhCCcceEeee
Q 018439 334 IKQRSRDELLQLFPHLMCFKV 354 (356)
Q Consensus 334 ~~~~~~~~~~~~~p~L~~l~l 354 (356)
++..+..+...+|+|++..+
T Consensus 519 -~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 519 -SFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp -BHHHHHHHHHHCTTEEEEEE
T ss_pred -CHHHHHHHHHhCCCCEEEEe
Confidence 78888888888999876543
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=5e-22 Score=184.17 Aligned_cols=212 Identities=21% Similarity=0.392 Sum_probs=142.8
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCC----------CCCCC
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR----------CVKLT 206 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~ 206 (356)
..+++|++|+++++ .+++..+..++..+++|++|++.+ .+.+..+..+...+++|++|++++ |..++
T Consensus 290 ~~~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 290 PFAAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred hhcCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 34556666666666 366666655556677777777763 455566666666677777777774 56777
Q ss_pred hHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc-CCCCCEEecCC---CCCCch----HHHHH-hhcCCCCcEEecCC
Q 018439 207 DGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCG---AQNLSD----EGLAC-IAKCKNLVSLNLTW 277 (356)
Q Consensus 207 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~---~~~~~~----~~~~~-l~~~~~L~~L~l~~ 277 (356)
+.++..+...+++|++|++. |..+.+..+..++. +++|++|++.+ +..+++ .++.. +..+++|++|++++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 76677666777777777773 35666666666664 77777777752 324443 23333 34477778887766
Q ss_pred CC-CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 278 CV-RITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 278 ~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
|. .+++..+..+...+++|+.|++++| .+++.++..+...|+ +|++|++++|. +++..+..+...+|+|+.|+++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~-~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCP-NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCT-TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCc-ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc
Confidence 54 4677777777777778888888776 577777777766665 78888888877 6777777777777888877764
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=4.2e-19 Score=159.44 Aligned_cols=295 Identities=21% Similarity=0.266 Sum_probs=202.0
Q ss_pred HHHHhccCCCcceEeccccccchhh---hHHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCC
Q 018439 48 LHRTLVSYPSLWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC 124 (356)
Q Consensus 48 w~~~~~~~~~l~~~l~l~~~~~~~~---~~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~ 124 (356)
|..++...+.+ +.++++.+..... .+...+ ..+++|++|+++++. +.+.....+...+....++|++|+++++
T Consensus 20 ~~~~~~~~~~L-~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 20 WAELLPLLQQC-QVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHHHHHTTC-SEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred HHHHHhhcCCc-cEEEccCCCCCHHHHHHHHHHH--HhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCC
Confidence 44433344444 7788876653322 122222 446889999998864 6666666665544222227999999987
Q ss_pred CCCCHHH---HHHHHHhCCCccEEEeecCCccCHHHHHHHHHh----CCcCcEEeccCCCCCCHHH---HHHHHHhCCCC
Q 018439 125 QKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKS---LQLIADNYQEL 194 (356)
Q Consensus 125 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L 194 (356)
.+++.+ +......+++|++|+++++ .+++.++..+... .++|++|+++++ .+++.. +......+++|
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTC
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCC
Confidence 466543 3444567889999999988 6777766655443 357999999886 455433 34445568999
Q ss_pred cEEecCCCCCCChHHHHHHHh----cCCCCcEEEcCCCCCCChHH----HHHhccCCCCCEEecCCCCCCchHHHHHhh-
Q 018439 195 ESLNLTRCVKLTDGGLQKILI----KCSSLRSLNLYALSGFTDEA----YKKISLLAHLKFLDLCGAQNLSDEGLACIA- 265 (356)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~- 265 (356)
++|+++++ .+++..+..+.. ..++|++|++.+| .+.+.. ...+..+++|++|+++++ .+++.++..++
T Consensus 173 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~ 249 (461)
T 1z7x_W 173 KELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCP 249 (461)
T ss_dssp CEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred CEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHH
Confidence 99999985 576655554443 3569999999986 444433 334557899999999998 67777665554
Q ss_pred ----cCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCCHHHHHHHHHHcc---ccccEEecCCCCCcc
Q 018439 266 ----KCKNLVSLNLTWCVRITDVGVMAIA---EGCSSLEFLSLFGIVGVTDKCLEVLSRFCS---NTLTTLDVNGCVGIK 335 (356)
Q Consensus 266 ----~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~---~~L~~L~l~~c~~~~ 335 (356)
.+++|++|++++| .+++.+...+. ..+++|++|+++++ .+++.+...+..... ++|++|++++|. ++
T Consensus 250 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~ 326 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FT 326 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB
T ss_pred HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-Cc
Confidence 3789999999986 78877644443 45899999999987 688887777765422 489999999986 44
Q ss_pred HH---HHHHHHhhCCcceEeeec
Q 018439 336 QR---SRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 336 ~~---~~~~~~~~~p~L~~l~l~ 355 (356)
+. .+......+++|+.|+++
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECC
T ss_pred hHHHHHHHHHHhhCCCccEEEcc
Confidence 33 345555678999999875
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.5e-20 Score=158.79 Aligned_cols=216 Identities=20% Similarity=0.299 Sum_probs=178.2
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|++|+++++. +.+..+.... ..+++|++|+++++ .+++.....+ ..+++|++|++++|..+++.++..
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~~~~~~~----~~~~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVSTLHGIL----SQCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHHHH----TTBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHH
T ss_pred ccCCCCCEEEccCCC-cCHHHHHHHH----hhCCCCCEEeCcCc-ccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHH
Confidence 457899999999875 5555455553 45699999999998 5776665555 459999999999997788888888
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCC-CCcEEecCCCC-CCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHH
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK 238 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (356)
.+..+++|++|++.++..+++..+......++ +|++|++++|. .+++..+...+..+++|++|++.+|..+.+.....
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 88899999999999976788877888888899 99999999975 67777888888899999999999987677777778
Q ss_pred hccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH
Q 018439 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTD 309 (356)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 309 (356)
+..+++|++|++++|..+.+.++..++++++|++|++++| +++..+..+...+|.|+ ++++ .+++
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n-~l~~ 307 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCS-HFTT 307 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCC-CSCC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---Eecc-cCcc
Confidence 8899999999999998788888878889999999999997 88877777765566554 6554 4543
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=8.9e-19 Score=157.32 Aligned_cols=93 Identities=23% Similarity=0.360 Sum_probs=45.6
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHH---HHHHHhCCCccEEEeecCCccCHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI---EIISSTCPELKVFSIYWNVRVTDIG 157 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~ 157 (356)
..+++|++|+++++. +++.....+........++|++|+++++ .++.... ......+++|++|+++++ .+++.+
T Consensus 110 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 186 (461)
T 1z7x_W 110 RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAG 186 (461)
T ss_dssp TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHH
T ss_pred ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHH
Confidence 345666667766653 5555555554443333445666666655 3443322 222334556666666555 344444
Q ss_pred HHHHHH----hCCcCcEEeccCC
Q 018439 158 IQHLVK----NCKHIIDLNLSGC 176 (356)
Q Consensus 158 ~~~l~~----~~~~L~~L~l~~~ 176 (356)
+..+.. ..++|++|+++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCC
Confidence 333322 1235555555543
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3e-18 Score=150.14 Aligned_cols=261 Identities=20% Similarity=0.247 Sum_probs=177.9
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCC--CCC---HHHHHHH---HHhCCCccEEEeecCCc
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ--KIS---DKGIEII---SSTCPELKVFSIYWNVR 152 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~--~~~---~~~~~~~---~~~~~~L~~L~l~~~~~ 152 (356)
..+++|++|+++++. +.+.....+... +..+++|++|+++++. .+. +..+..+ ...+++|++|+++++ .
T Consensus 29 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 105 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNT-IGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A 105 (386)
T ss_dssp HHCSCCCEEECTTSE-ECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred hcCCCccEEECCCCC-CCHHHHHHHHHH-HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-c
Confidence 346789999999873 666555555433 4567899999998862 222 2233322 356799999999988 6
Q ss_pred cCHHH---HHHHHHhCCcCcEEeccCCCCCCHHHHHHHHH---hC---------CCCcEEecCCCCCCChHHHH---HHH
Q 018439 153 VTDIG---IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NY---------QELESLNLTRCVKLTDGGLQ---KIL 214 (356)
Q Consensus 153 ~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~~~~~~~~~---~~~ 214 (356)
++..+ +...+..+++|++|+++++ .+++.....+.. .+ ++|++|+++++ .+++..+. ..+
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTF 183 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHH
Confidence 66543 3444567899999999986 565444333333 33 89999999984 67655555 455
Q ss_pred hcCCCCcEEEcCCCCCCChHH----HH-HhccCCCCCEEecCCCCCCchHHH----HHhhcCCCCcEEecCCCCCCCHHH
Q 018439 215 IKCSSLRSLNLYALSGFTDEA----YK-KISLLAHLKFLDLCGAQNLSDEGL----ACIAKCKNLVSLNLTWCVRITDVG 285 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~ 285 (356)
..+++|++|++.+| .+.+.+ .. .+..+++|++|++++| .+++.+. ..+..+++|++|++++| .+++.+
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 260 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARG 260 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHH
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhh
Confidence 67899999999985 566543 22 4557899999999998 5765443 33566899999999986 688776
Q ss_pred HHHHHhc-----CCCCCEEEecCCCCCCHHHHHHHHH----HccccccEEecCCCCCccHH-HHHHHHhhCCcceE
Q 018439 286 VMAIAEG-----CSSLEFLSLFGIVGVTDKCLEVLSR----FCSNTLTTLDVNGCVGIKQR-SRDELLQLFPHLMC 351 (356)
Q Consensus 286 ~~~l~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~~L~~L~l~~c~~~~~~-~~~~~~~~~p~L~~ 351 (356)
...++.. +++|+.|++++| .+++.++..+.. .+ ++|++|++++|+-.... .+..+...+|.++.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l-~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKM-PDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHC-TTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcC-CCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 6555432 789999999987 688866655543 23 49999999998633222 14555555555443
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=7.8e-17 Score=141.16 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=175.2
Q ss_pred CchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHH---HhCCCccEEEeecCC--ccC---HHHHHHH---HHhC
Q 018439 97 IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNV--RVT---DIGIQHL---VKNC 165 (356)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~---~~~~~~l---~~~~ 165 (356)
+++..+..+... +..+++|++|+++++ .++......+. ..+++|++|+++++. .++ +.++..+ +..+
T Consensus 16 l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 16 ITTEDEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp CCSHHHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 344455444333 245689999999997 67776665543 468999999999862 222 2233332 3578
Q ss_pred CcCcEEeccCCCCCCHH---HHHHHHHhCCCCcEEecCCCCCCChHH---HHHHHhcC---------CCCcEEEcCCCCC
Q 018439 166 KHIIDLNLSGCKNLLDK---SLQLIADNYQELESLNLTRCVKLTDGG---LQKILIKC---------SSLRSLNLYALSG 230 (356)
Q Consensus 166 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~---------~~L~~L~l~~~~~ 230 (356)
++|++|+++++ .+++. .+......+++|++|++++| .++... +...+..+ ++|++|+++++ .
T Consensus 94 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~ 170 (386)
T 2ca6_A 94 PKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-R 170 (386)
T ss_dssp TTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-C
T ss_pred CcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-C
Confidence 99999999985 55543 34445567999999999995 565433 33333344 89999999995 4
Q ss_pred CChHHHH----HhccCCCCCEEecCCCCCCchHHH----H-HhhcCCCCcEEecCCCCCCCHHHHHHH---HhcCCCCCE
Q 018439 231 FTDEAYK----KISLLAHLKFLDLCGAQNLSDEGL----A-CIAKCKNLVSLNLTWCVRITDVGVMAI---AEGCSSLEF 298 (356)
Q Consensus 231 ~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~ 298 (356)
+.+.... .+..+++|++|++++| .+++.++ . .+..+++|++|++++| .+++.+...+ ...+++|+.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCE
Confidence 5533333 4567899999999999 6776653 2 4567899999999986 6776554444 356899999
Q ss_pred EEecCCCCCCHHHHHHHHHHc----cccccEEecCCCCCccHHH---H-HHHHhhCCcceEeeec
Q 018439 299 LSLFGIVGVTDKCLEVLSRFC----SNTLTTLDVNGCVGIKQRS---R-DELLQLFPHLMCFKVH 355 (356)
Q Consensus 299 L~l~~~~~~~~~~~~~l~~~~----~~~L~~L~l~~c~~~~~~~---~-~~~~~~~p~L~~l~l~ 355 (356)
|++++| .+++.+...++... .++|++|++++|. ++... + ..+...+|+|+.|+++
T Consensus 249 L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 249 LGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp EECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred EECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 999998 69988777666531 3599999999986 55532 3 3333568999999875
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=7.2e-16 Score=133.73 Aligned_cols=241 Identities=19% Similarity=0.172 Sum_probs=140.9
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCC-CccEEecCCCCCCCHHHHHHH---HHh-CCCccEEEeecCCccCHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQ-DLESLNLNGCQKISDKGIEII---SST-CPELKVFSIYWNVRVTDIG 157 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~ 157 (356)
.++|++|+++++. +++.....+... +..++ +|++|+++++ .++......+ ... +++|++|+++++ .+++..
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQA-FANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHH-HHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred CCCceEEEccCCC-CChHHHHHHHHH-HHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHH
Confidence 3458888888764 444333333322 23456 7888888886 4444333322 223 378888888877 454333
Q ss_pred ---HHHHHHhC-CcCcEEeccCCCCCCHHHHHHH---HHh-CCCCcEEecCCCCCCCh---HHHHHHHhcCC-CCcEEEc
Q 018439 158 ---IQHLVKNC-KHIIDLNLSGCKNLLDKSLQLI---ADN-YQELESLNLTRCVKLTD---GGLQKILIKCS-SLRSLNL 225 (356)
Q Consensus 158 ---~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~---~~~~~~~~~~~-~L~~L~l 225 (356)
+...+..+ ++|++|+++++ .+++.....+ ... .++|++|+++++ .+++ ..+...+...+ +|++|++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeee
Confidence 33333444 68888888875 3444333333 223 358888888874 5543 23333444554 8888888
Q ss_pred CCCCCCChHHHH----HhccC-CCCCEEecCCCCCCchHHHHHh----hc-CCCCcEEecCCCCCCCHHH---HHHHHhc
Q 018439 226 YALSGFTDEAYK----KISLL-AHLKFLDLCGAQNLSDEGLACI----AK-CKNLVSLNLTWCVRITDVG---VMAIAEG 292 (356)
Q Consensus 226 ~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~---~~~l~~~ 292 (356)
++| .+.+.... .+... ++|++|+++++ .+++.+...+ .. .++|++|++++| .+++.+ +..+...
T Consensus 175 s~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 175 RGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDS 251 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTT
T ss_pred cCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhc
Confidence 875 34333222 33344 48888888888 5665444333 33 457888888875 555533 3344455
Q ss_pred CCCCCEEEecCCC--CCCHHHHHHHHHHcc--ccccEEecCCCC
Q 018439 293 CSSLEFLSLFGIV--GVTDKCLEVLSRFCS--NTLTTLDVNGCV 332 (356)
Q Consensus 293 ~~~L~~L~l~~~~--~~~~~~~~~l~~~~~--~~L~~L~l~~c~ 332 (356)
+++|+.|++++|. .+++.++..+....+ ++|+.|+++++.
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 6788888888763 366666666654322 367778887765
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=3.9e-15 Score=129.11 Aligned_cols=236 Identities=17% Similarity=0.152 Sum_probs=157.4
Q ss_pred ccCCCccEEecCCCCCCCHHHH---HHHHHhCC-CccEEEeecCCccCHHHH---HHHHHhC-CcCcEEeccCCCCCCH-
Q 018439 111 GSLQDLESLNLNGCQKISDKGI---EIISSTCP-ELKVFSIYWNVRVTDIGI---QHLVKNC-KHIIDLNLSGCKNLLD- 181 (356)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~---~~l~~~~-~~L~~L~l~~~~~~~~- 181 (356)
...++|++|+++++. +++... ......++ +|++|+++++ .+++.+. ..++... ++|++|+++++ .+++
T Consensus 19 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~ 95 (362)
T 3goz_A 19 SIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYK 95 (362)
T ss_dssp TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred hCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCChH
Confidence 344669999999974 554443 23445677 9999999998 6665443 3333343 89999999996 4543
Q ss_pred --HHHHHHHHhC-CCCcEEecCCCCCCChHHH---HHHHhc-CCCCcEEEcCCCCCCChHH----HHHhccCC-CCCEEe
Q 018439 182 --KSLQLIADNY-QELESLNLTRCVKLTDGGL---QKILIK-CSSLRSLNLYALSGFTDEA----YKKISLLA-HLKFLD 249 (356)
Q Consensus 182 --~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~---~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~l~~~~-~L~~L~ 249 (356)
..+......+ ++|++|+++++ .++.... ...+.. +++|++|+++++ .+.+.. ...+...+ +|++|+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEee
Confidence 3344444445 89999999995 5554333 333444 469999999985 454332 33344555 999999
Q ss_pred cCCCCCCchHHHHHh----hcC-CCCcEEecCCCCCCCHHHHHHHH----hcCCCCCEEEecCCCCCCHHHHHHHHH---
Q 018439 250 LCGAQNLSDEGLACI----AKC-KNLVSLNLTWCVRITDVGVMAIA----EGCSSLEFLSLFGIVGVTDKCLEVLSR--- 317 (356)
Q Consensus 250 l~~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~~l~~--- 317 (356)
+++| .+++.+...+ ..+ ++|++|++++| .+++.+...+. ...++|++|+++++ .+++.+...+..
T Consensus 174 Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 174 LRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKD 250 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTT
T ss_pred ecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHh
Confidence 9999 5665554443 445 59999999986 56664433332 22469999999997 677765555443
Q ss_pred HccccccEEecCCCC--CccHHHHHHHHhhCC---cceEeeec
Q 018439 318 FCSNTLTTLDVNGCV--GIKQRSRDELLQLFP---HLMCFKVH 355 (356)
Q Consensus 318 ~~~~~L~~L~l~~c~--~~~~~~~~~~~~~~p---~L~~l~l~ 355 (356)
.+ ++|++|++++|. .+++..+..+...++ +|+.|+++
T Consensus 251 ~l-~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 251 SL-KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp TT-TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred cC-CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 33 489999999885 456666666665554 45555543
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=1.7e-15 Score=130.69 Aligned_cols=236 Identities=21% Similarity=0.234 Sum_probs=125.3
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|++|+++++. +.+- . .+..+++|++|+++++. +..... ...+++|++|+++++....... .
T Consensus 85 ~~l~~L~~L~L~~n~-i~~~--~-----~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~ 150 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNK-ITDI--S-----ALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLS--P 150 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCC--G-----GGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCG--G
T ss_pred hcCCcCCEEEccCCc-ccCc--h-----HHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCccccc--c
Confidence 456788888887764 3221 1 14556778888877753 332111 3456677777776653322211 1
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCC---------------------CCChHHHHHHHhcCCC
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV---------------------KLTDGGLQKILIKCSS 219 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~~~~~~~~~~~~~~~~ 219 (356)
+..+++|++|++.++. +.... . ...+++|++|+++++. .++.... +..+++
T Consensus 151 -~~~l~~L~~L~l~~~~-~~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 222 (347)
T 4fmz_A 151 -LSNMTGLNYLTVTESK-VKDVT--P-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTR 222 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTT
T ss_pred -hhhCCCCcEEEecCCC-cCCch--h-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCc
Confidence 2345555555555532 21100 0 2234555555554431 2221110 345666
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (356)
|++|++.++. +.... .+..+++|++|+++++ .++.. ..+..+++|++|++++| .+++. .....+++|+.|
T Consensus 223 L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L 292 (347)
T 4fmz_A 223 LNSLKIGNNK-ITDLS--PLANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSL 292 (347)
T ss_dssp CCEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEE
T ss_pred CCEEEccCCc-cCCCc--chhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEE
Confidence 6666666642 22111 1556677777777776 34332 34566777777777775 34432 123447778888
Q ss_pred EecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 300 SLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 300 ~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
++++| .+++.....+.. + ++|++|++++|+- +. +.. ...+++|+.|++.
T Consensus 293 ~L~~n-~l~~~~~~~l~~-l-~~L~~L~L~~n~l-~~--~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 293 FLNNN-QLGNEDMEVIGG-L-TNLTTLFLSQNHI-TD--IRP-LASLSKMDSADFA 341 (347)
T ss_dssp ECCSS-CCCGGGHHHHHT-C-TTCSEEECCSSSC-CC--CGG-GGGCTTCSEESSS
T ss_pred ECcCC-cCCCcChhHhhc-c-ccCCEEEccCCcc-cc--ccC-hhhhhccceeehh
Confidence 88776 455544444433 3 4788888887763 22 111 4567788877764
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=9e-15 Score=126.21 Aligned_cols=254 Identities=20% Similarity=0.216 Sum_probs=155.5
Q ss_pred eEeccccccchhhhHHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhC
Q 018439 60 LVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 139 (356)
Q Consensus 60 ~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 139 (356)
+.++++......-. .+..+++|++|+++++. +.+-.. +..+++|++|+++++ .+... . ....+
T Consensus 47 ~~L~l~~~~i~~~~-----~~~~~~~L~~L~l~~n~-i~~~~~-------~~~l~~L~~L~L~~n-~i~~~--~-~~~~l 109 (347)
T 4fmz_A 47 TKLVVAGEKVASIQ-----GIEYLTNLEYLNLNGNQ-ITDISP-------LSNLVKLTNLYIGTN-KITDI--S-ALQNL 109 (347)
T ss_dssp SEEECCSSCCCCCT-----TGGGCTTCCEEECCSSC-CCCCGG-------GTTCTTCCEEECCSS-CCCCC--G-GGTTC
T ss_pred cEEEEeCCccccch-----hhhhcCCccEEEccCCc-cccchh-------hhcCCcCCEEEccCC-cccCc--h-HHcCC
Confidence 56666654322111 13557899999999874 332111 356799999999997 44432 2 24678
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
++|++|+++++ .++.... +..+++|++|++.++..... +.. ...+++|++|+++++ .+.... . +..+++
T Consensus 110 ~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~--~~~-~~~l~~L~~L~l~~~-~~~~~~--~-~~~l~~ 178 (347)
T 4fmz_A 110 TNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSD--LSP-LSNMTGLNYLTVTES-KVKDVT--P-IANLTD 178 (347)
T ss_dssp TTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCC--CGG-GTTCTTCCEEECCSS-CCCCCG--G-GGGCTT
T ss_pred CcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCccc--ccc-hhhCCCCcEEEecCC-CcCCch--h-hccCCC
Confidence 99999999988 4543322 45789999999999755443 222 356899999999986 443211 1 567888
Q ss_pred CcEEEcCCCCCCChHHHH-------------------HhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCC
Q 018439 220 LRSLNLYALSGFTDEAYK-------------------KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVR 280 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~-------------------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 280 (356)
|++|++.++.......+. .+..+++|++|+++++ .+++.. .+..+++|++|++++| .
T Consensus 179 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n-~ 254 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLS--PLANLSQLTWLEIGTN-Q 254 (347)
T ss_dssp CSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSS-C
T ss_pred CCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCc--chhcCCCCCEEECCCC-c
Confidence 888888875322111100 1334456666666665 233221 1556677777777765 3
Q ss_pred CCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 281 ITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 281 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+++. . ....+++|+.|++++| .+++. .. ...+ ++|++|++++|. +.... ......+++|+.|+++
T Consensus 255 l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l-~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 255 ISDI--N-AVKDLTKLKMLNVGSN-QISDI--SV-LNNL-SQLNSLFLNNNQ-LGNED-MEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CCCC--G-GGTTCTTCCEEECCSS-CCCCC--GG-GGGC-TTCSEEECCSSC-CCGGG-HHHHHTCTTCSEEECC
T ss_pred cCCC--h-hHhcCCCcCEEEccCC-ccCCC--hh-hcCC-CCCCEEECcCCc-CCCcC-hhHhhccccCCEEEcc
Confidence 3331 1 2334678888888876 45442 11 1223 489999998885 33332 3334468899988875
No 15
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.59 E-value=1.9e-15 Score=114.29 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=92.9
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHHHHHHc
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEG---CSSLEFLSLFGIVGVTDKCLEVLSRFC 319 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~ 319 (356)
.+|++|++++| .+++.++..+..+++|++|++++|..++|.++..+... +++|++|++++|+++|+.++..+.. |
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 46899999999 49999999999999999999999999999999999862 5689999999999999999998864 5
Q ss_pred cccccEEecCCCCCccHHH--HHHHHhhCCcceE
Q 018439 320 SNTLTTLDVNGCVGIKQRS--RDELLQLFPHLMC 351 (356)
Q Consensus 320 ~~~L~~L~l~~c~~~~~~~--~~~~~~~~p~L~~ 351 (356)
+ +|++|++++|+.+++.. +..+.+.+|++++
T Consensus 139 ~-~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 R-NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp T-TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred C-CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 4 99999999999998754 6778889999876
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=5.1e-16 Score=139.09 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=17.3
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
..+++|++|+++++ .+.......+..+++|++|++++|
T Consensus 296 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 296 SHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC
Confidence 34455555555554 233322233444455555555543
No 17
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=6.8e-13 Score=114.80 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=82.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHh----CCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHH
Q 018439 114 QDLESLNLNGCQKISDKGIEIISST----CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 189 (356)
+.|+.|+++++ .++......+... +++|++|+++++ .+++.++..+...+++|++|+++++ .+++.....+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 55666666665 4555544443332 246666666666 5666665555555556666666664 455544444332
Q ss_pred ----hCCCCcEEecCCCCCCChHHHHH---HHhcCCCCcEEEcCCCCCCChHHHHH----hccCCCCCEEecCCCCCCch
Q 018439 190 ----NYQELESLNLTRCVKLTDGGLQK---ILIKCSSLRSLNLYALSGFTDEAYKK----ISLLAHLKFLDLCGAQNLSD 258 (356)
Q Consensus 190 ----~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~ 258 (356)
..++|++|++++| .+++.+... .+..+++|++|+++++ .+.+.+... +...++|++|++++| .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 2355666666653 444333222 2234455555555552 233333222 223444555555554 3444
Q ss_pred HHHHHhh----cCCCCcEEecCCCCCCCHHHHHHHH
Q 018439 259 EGLACIA----KCKNLVSLNLTWCVRITDVGVMAIA 290 (356)
Q Consensus 259 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~ 290 (356)
.+...++ ..++|++|++++| .+++.+...+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~ 260 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence 4333322 2344555555443 34444444443
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=2.7e-16 Score=149.60 Aligned_cols=227 Identities=20% Similarity=0.233 Sum_probs=112.5
Q ss_pred ccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH--HHHhCCcCcEEeccCCCCCCHHHHHHHH
Q 018439 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIA 188 (356)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 188 (356)
..+++|++|+++++. +.......+...+++|++|+++++ .++...... .+..+++|++|+++++. +... .. .
T Consensus 123 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~--~ 196 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNK-ISGD-VD--V 196 (768)
T ss_dssp GGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSE-EESC-CB--C
T ss_pred hCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCc-cccc-CC--c
Confidence 344666666666542 110000001134566666666655 333222111 13456666666666542 2110 00 0
Q ss_pred HhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCC
Q 018439 189 DNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (356)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (356)
..+++|++|+++++ .++. ..+. +..+++|++|++.++ .+.......+..+++|++|++++|. +.... . ...++
T Consensus 197 ~~l~~L~~L~Ls~n-~l~~-~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~-~-~~~l~ 269 (768)
T 3rgz_A 197 SRCVNLEFLDVSSN-NFST-GIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQ-FVGPI-P-PLPLK 269 (768)
T ss_dssp TTCTTCCEEECCSS-CCCS-CCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSC-CEESC-C-CCCCT
T ss_pred ccCCcCCEEECcCC-cCCC-CCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCc-ccCcc-C-ccccC
Confidence 34666777777664 2221 1111 455677777777763 3444445556667777777777763 32110 0 11466
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCc
Q 018439 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPH 348 (356)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~ 348 (356)
+|++|++++|. ++......+...+++|++|+++++ .+++.....+ ..+ ++|++|++++|..... .-......+++
T Consensus 270 ~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~-~~l-~~L~~L~L~~n~l~~~-ip~~~l~~l~~ 344 (768)
T 3rgz_A 270 SLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFF-GSC-SLLESLALSSNNFSGE-LPMDTLLKMRG 344 (768)
T ss_dssp TCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGG-GGC-TTCCEEECCSSEEEEE-CCHHHHTTCTT
T ss_pred CCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCC-cCCCccchHH-hcC-CCccEEECCCCcccCc-CCHHHHhcCCC
Confidence 77777777653 221111112223578888888876 3332111111 223 4889999888753211 11233456888
Q ss_pred ceEeeec
Q 018439 349 LMCFKVH 355 (356)
Q Consensus 349 L~~l~l~ 355 (356)
|+.|+++
T Consensus 345 L~~L~Ls 351 (768)
T 3rgz_A 345 LKVLDLS 351 (768)
T ss_dssp CCEEECC
T ss_pred CCEEeCc
Confidence 8888875
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.48 E-value=5.6e-15 Score=132.35 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=86.0
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
++|+.|+++++ .++. .....+..+++|++|++.++ .+.......+..+++|++|+++++ .++......+..+++|+
T Consensus 275 ~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKS-KIFA-LLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCC
T ss_pred cCceEEEecCc-cccc-cchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCC
Confidence 34555555552 2321 11223456788999999884 444443445667899999999999 56655556678899999
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
+|++++| .++...... ...+++|+.|+++++ .++......+ ..+ ++|++|++++++
T Consensus 351 ~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l-~~L~~L~l~~N~ 406 (455)
T 3v47_A 351 VLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QLKSVPDGIF-DRL-TSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTT-TTC-TTCCEEECCSSC
T ss_pred EEECCCC-cccccChhh-ccccccccEEECCCC-ccccCCHhHh-ccC-CcccEEEccCCC
Confidence 9999986 454332222 234899999999997 5554221111 223 499999999875
No 20
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=6.1e-12 Score=108.84 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=58.9
Q ss_pred cCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHh----cCCCCcEEEcCCCCCCChHHHHHh---
Q 018439 167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI----KCSSLRSLNLYALSGFTDEAYKKI--- 239 (356)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~l--- 239 (356)
+|++|+++++ .+++..+..+...+++|++|++++| .+++.+...+.. ..++|++|++++| .+.+.....+
T Consensus 102 ~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 178 (372)
T 3un9_A 102 ALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG 178 (372)
T ss_dssp CEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred CceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence 4444554443 3444444444443444444554442 444333322221 2344445555443 2333222222
Q ss_pred -ccCCCCCEEecCCCCCCchHHHHHh----hcCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCCHHH
Q 018439 240 -SLLAHLKFLDLCGAQNLSDEGLACI----AKCKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSLFGIVGVTDKC 311 (356)
Q Consensus 240 -~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~ 311 (356)
...++|++|++++| .+++.+...+ ...++|++|++++| .+++.+...+.. .+++|++|++++| .+++.+
T Consensus 179 L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g 255 (372)
T 3un9_A 179 LAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEG 255 (372)
T ss_dssp HHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHH
T ss_pred HhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHH
Confidence 23444455555444 3444333222 22344455554443 344443333322 2344455555443 344444
Q ss_pred HHHHH
Q 018439 312 LEVLS 316 (356)
Q Consensus 312 ~~~l~ 316 (356)
...+.
T Consensus 256 ~~~L~ 260 (372)
T 3un9_A 256 RQVLR 260 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=4.4e-16 Score=133.01 Aligned_cols=223 Identities=16% Similarity=0.187 Sum_probs=124.1
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
...+++.|+++++. +.. +... ...+++|++|+++++ .+. .++.....+++|++|+++++ .++ .+...
T Consensus 79 ~~~~l~~L~L~~n~-l~~-----lp~~-l~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQ-----FPDQ-AFRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARN-PLR--ALPAS 145 (328)
T ss_dssp TSTTCCEEEEESSC-CSS-----CCSC-GGGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGG
T ss_pred cccceeEEEccCCC-chh-----cChh-hhhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCC-ccc--cCcHH
Confidence 35778888887753 221 1111 233578888888876 333 22223356788888888887 444 22323
Q ss_pred HHhCCcCcEEeccCCCCCCHHHHHHH---------HHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCC
Q 018439 162 VKNCKHIIDLNLSGCKNLLDKSLQLI---------ADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFT 232 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 232 (356)
+..+++|++|++++|..... +... ...+++|++|+++++ .++ .++..+..+++|++|++.++. +.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~--~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N~-l~ 219 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTE--LPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNSP-LS 219 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCC--CCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESSC-CC
T ss_pred HhcCcCCCEEECCCCCCccc--cChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCCC-CC
Confidence 45778888888887543321 1100 112677788877774 443 233335567777888777743 22
Q ss_pred hHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHH
Q 018439 233 DEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCL 312 (356)
Q Consensus 233 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 312 (356)
. ....+..+++|++|++++|. +.......++.+++|++|++++|...+... .....+++|+.|++++|...+. ..
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~-iP 294 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSR-LP 294 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEECTTCTTCCC-CC
T ss_pred c-CchhhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeCCCCCchhh-cc
Confidence 1 12235567777777777763 222222345567777777777765433211 1123467777777777643331 11
Q ss_pred HHHHHHccccccEEecCC
Q 018439 313 EVLSRFCSNTLTTLDVNG 330 (356)
Q Consensus 313 ~~l~~~~~~~L~~L~l~~ 330 (356)
..+.. . ++|+.+.+..
T Consensus 295 ~~l~~-L-~~L~~l~l~~ 310 (328)
T 4fcg_A 295 SLIAQ-L-PANCIILVPP 310 (328)
T ss_dssp GGGGG-S-CTTCEEECCG
T ss_pred HHHhh-c-cCceEEeCCH
Confidence 11111 2 3666666653
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.44 E-value=2e-13 Score=122.49 Aligned_cols=232 Identities=21% Similarity=0.207 Sum_probs=108.5
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|++|+++++....... +..+++|++|+++++. +.... . ...+++|++|+++++ .++... .
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~--~ 151 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQIADITP--------LANLTNLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSN-TISDIS--A 151 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEE-EECCCG--G
T ss_pred hccccCCEEECCCCccccChh--------hcCCCCCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCC-ccCCCh--h
Confidence 445666666666553211111 3455777777777653 33221 1 356777777777766 333211 1
Q ss_pred HHHhCC---------------------cCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 161 LVKNCK---------------------HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 161 l~~~~~---------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
+..++ +|++|+++++. +.. +.. ...+++|++|+++++ .+.... . +..+++
T Consensus 152 -~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~ 222 (466)
T 1o6v_A 152 -LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSD--ISV-LAKLTNLESLIATNN-QISDIT--P-LGILTN 222 (466)
T ss_dssp -GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCC--CGG-GGGCTTCSEEECCSS-CCCCCG--G-GGGCTT
T ss_pred -hccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCC--Chh-hccCCCCCEEEecCC-cccccc--c-ccccCC
Confidence 12333 34444444321 211 011 123444444444442 222110 0 233455
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (356)
|+.|++.++. +.+ ...+..+++|++|+++++. +.... .+..+++|++|++++| .+++... ...+++|+.|
T Consensus 223 L~~L~l~~n~-l~~--~~~l~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L 292 (466)
T 1o6v_A 223 LDELSLNGNQ-LKD--IGTLASLTNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGAN-QISNISP---LAGLTALTNL 292 (466)
T ss_dssp CCEEECCSSC-CCC--CGGGGGCTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEE
T ss_pred CCEEECCCCC-ccc--chhhhcCCCCCEEECCCCc-cccch--hhhcCCCCCEEECCCC-ccCcccc---ccCCCccCeE
Confidence 5555555432 211 1234455566666666552 32211 1455666666666664 2332111 2346677777
Q ss_pred EecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 300 SLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 300 ~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+++++ .+++... + ..+ ++|++|++++|.- .+. .. ...+++|+.|+++
T Consensus 293 ~L~~n-~l~~~~~--~-~~l-~~L~~L~L~~n~l-~~~--~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 293 ELNEN-QLEDISP--I-SNL-KNLTYLTLYFNNI-SDI--SP-VSSLTKLQRLFFY 339 (466)
T ss_dssp ECCSS-CCSCCGG--G-GGC-TTCSEEECCSSCC-SCC--GG-GGGCTTCCEEECC
T ss_pred EcCCC-cccCchh--h-cCC-CCCCEEECcCCcC-CCc--hh-hccCccCCEeECC
Confidence 77765 3332111 1 222 4777788777742 211 11 3467777777764
No 23
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.44 E-value=2e-13 Score=103.21 Aligned_cols=92 Identities=18% Similarity=0.391 Sum_probs=63.0
Q ss_pred CCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcC----CCCcEEecCCCCCCCHHHHHHHHhcCC
Q 018439 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKC----KNLVSLNLTWCVRITDVGVMAIAEGCS 294 (356)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (356)
+|++|++++|. +++.++..+..+++|++|+|++|..++|.++..++.. ++|++|++++|..++|.++..+.. ++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 56666666654 6666666666677777777777766777777777653 467777777777777777776653 67
Q ss_pred CCCEEEecCCCCCCHHHH
Q 018439 295 SLEFLSLFGIVGVTDKCL 312 (356)
Q Consensus 295 ~L~~L~l~~~~~~~~~~~ 312 (356)
+|++|++++|+.+++.++
T Consensus 140 ~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp TCCEEEEESCTTCCCHHH
T ss_pred CCCEEECCCCCCCCchHH
Confidence 777777777777776553
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=1.7e-15 Score=140.66 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=6.2
Q ss_pred cccEEecCCCC
Q 018439 322 TLTTLDVNGCV 332 (356)
Q Consensus 322 ~L~~L~l~~c~ 332 (356)
+|++|++++|+
T Consensus 548 ~L~~L~l~~N~ 558 (606)
T 3t6q_A 548 QQRTINLRQNP 558 (606)
T ss_dssp TSSEEECTTCC
T ss_pred CCCEEeCCCCC
Confidence 55566655544
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.44 E-value=9e-16 Score=146.02 Aligned_cols=177 Identities=24% Similarity=0.340 Sum_probs=80.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHH--HHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHH
Q 018439 112 SLQDLESLNLNGCQKISDKGIEI--ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 189 (356)
.+++|++|+++++. +....... ....+++|++|+++++ .++.... ...+++|++|+++++. +... ... ..
T Consensus 149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n~-l~~~-~~~-l~ 220 (768)
T 3rgz_A 149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN-KISGDVD---VSRCVNLEFLDVSSNN-FSTG-IPF-LG 220 (768)
T ss_dssp CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB---CTTCTTCCEEECCSSC-CCSC-CCB-CT
T ss_pred cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC-cccccCC---cccCCcCCEEECcCCc-CCCC-Ccc-cc
Confidence 44566666666652 32211111 1345566666666655 2221100 0345666666666542 2210 111 23
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhc-CC
Q 018439 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAK-CK 268 (356)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~ 268 (356)
.+++|++|+++++ .++. .++..+..+++|++|++.++. +..... ...+++|++|+++++ .++......+.. ++
T Consensus 221 ~l~~L~~L~Ls~n-~l~~-~~~~~l~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 221 DCSALQHLDISGN-KLSG-DFSRAISTCTELKLLNISSNQ-FVGPIP--PLPLKSLQYLSLAEN-KFTGEIPDFLSGACD 294 (768)
T ss_dssp TCCSCCEEECCSS-CCCS-CHHHHTTTCSSCCEEECCSSC-CEESCC--CCCCTTCCEEECCSS-EEEESCCCCSCTTCT
T ss_pred cCCCCCEEECcCC-cCCC-cccHHHhcCCCCCEEECCCCc-ccCccC--ccccCCCCEEECcCC-ccCCccCHHHHhhcC
Confidence 4566666666663 3332 133344556666666666542 111000 014556666666665 232221122222 36
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
+|++|++++|. ++... ......+++|++|+++++
T Consensus 295 ~L~~L~Ls~n~-l~~~~-p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 295 TLTGLDLSGNH-FYGAV-PPFFGSCSLLESLALSSN 328 (768)
T ss_dssp TCSEEECCSSE-EEECC-CGGGGGCTTCCEEECCSS
T ss_pred cCCEEECcCCc-CCCcc-chHHhcCCCccEEECCCC
Confidence 66666666542 21110 111223566666666665
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=3.3e-15 Score=125.24 Aligned_cols=206 Identities=14% Similarity=0.082 Sum_probs=99.7
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.+++++|+++++. +... ....+..+++|++|+++++ .+..... .....+++|++|+++++..++.... ..+
T Consensus 31 ~~~l~~L~l~~n~-i~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~-~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHV-----PAASFRACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDP-ATF 101 (285)
T ss_dssp CTTCSEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCT-TTT
T ss_pred CCCceEEEeeCCc-CCcc-----CHHHcccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccCH-HHh
Confidence 3567777776653 2211 1111344567777777665 2332111 1224466777777766632332111 112
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|++.++ .++.. .......+++|++|+++++ .++.. ....+..+++|++|+++++ .+.......+..+
T Consensus 102 ~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 176 (285)
T 1ozn_A 102 HGLGRLHTLHLDRC-GLQEL-GPGLFRGLAALQYLYLQDN-ALQAL-PDDTFRDLGNLTHLFLHGN-RISSVPERAFRGL 176 (285)
T ss_dssp TTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred cCCcCCCEEECCCC-cCCEE-CHhHhhCCcCCCEEECCCC-ccccc-CHhHhccCCCccEEECCCC-cccccCHHHhcCc
Confidence 34567777777664 23221 0111234566777776663 33211 0112344666666666663 3332222234455
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
++|++|+++++ .++......+..+++|++|++++| .+++... .....+++|+.|++++++
T Consensus 177 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred cccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence 66666666666 344333344555666666666664 3332221 122335666666666653
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=5.8e-17 Score=137.39 Aligned_cols=232 Identities=18% Similarity=0.178 Sum_probs=145.8
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHH-HHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
.+++++|+++++. +.. +....+..+++|++|+++++ .+...+ .......+++|++|+++++ .++. +...
T Consensus 27 ~~~l~~L~L~~n~-l~~-----i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~--l~~~ 96 (306)
T 2z66_A 27 PSSATRLELESNK-LQS-----LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT--MSSN 96 (306)
T ss_dssp CTTCCEEECCSSC-CCC-----CCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEE--EEEE
T ss_pred CCCCCEEECCCCc-cCc-----cCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-cccc--Chhh
Confidence 3688999998764 321 11112456789999999986 444221 0112235899999999988 4432 1111
Q ss_pred HHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCh-HHHHHhc
Q 018439 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD-EAYKKIS 240 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~ 240 (356)
+..+++|++|+++++ .++..........+++|++|+++++ .+.. .....+..+++|++|++.++ .+.+ .....+.
T Consensus 97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 172 (306)
T 2z66_A 97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRV-AFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFT 172 (306)
T ss_dssp EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEE-CSTTTTTTCTTCCEEECTTC-EEGGGEECSCCT
T ss_pred cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCc-cchhhcccCcCCCEEECCCC-ccccccchhHHh
Confidence 346789999999885 3332111112345889999999885 3332 12223566899999999885 3322 1223455
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
.+++|++|+++++ .++......+..+++|++|++++|. +++..... ...+++|+.|+++++ .+++.....+.. .+
T Consensus 173 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~-~~ 247 (306)
T 2z66_A 173 ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQH-FP 247 (306)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSCCC-CC
T ss_pred hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC-CCcccCHHHHHh-hh
Confidence 7889999999998 5665544567788999999999863 43321111 245789999999987 454432222221 22
Q ss_pred ccccEEecCCCCC
Q 018439 321 NTLTTLDVNGCVG 333 (356)
Q Consensus 321 ~~L~~L~l~~c~~ 333 (356)
++|++|++++++-
T Consensus 248 ~~L~~L~L~~N~~ 260 (306)
T 2z66_A 248 SSLAFLNLTQNDF 260 (306)
T ss_dssp TTCCEEECTTCCE
T ss_pred ccCCEEEccCCCe
Confidence 4899999998763
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.4e-14 Score=125.23 Aligned_cols=181 Identities=16% Similarity=0.085 Sum_probs=122.2
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.+++++|+++++. ++.- ....+..+++|++|+++++ .+..... .....+++|++|+++++ .++.... ..+
T Consensus 51 ~~~L~~L~l~~n~-i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYI-----SNSDLQRCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSS-SWF 120 (353)
T ss_dssp CTTCCEEECTTSC-CCEE-----CTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSSCCH-HHH
T ss_pred cccCcEEECCCCc-Cccc-----CHHHhccCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCC-cCCcCCH-hHh
Confidence 4689999999874 3321 1112456799999999987 4443211 12356899999999988 5553222 224
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHH--HHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (356)
..+++|++|+++++ .++. +.. ....+++|++|+++++..++.. ....+..+++|++|+++++ .+.......+.
T Consensus 121 ~~l~~L~~L~L~~n-~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~ 195 (353)
T 2z80_A 121 KPLSSLTFLNLLGN-PYKT--LGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDAS-DLQSYEPKSLK 195 (353)
T ss_dssp TTCTTCSEEECTTC-CCSS--SCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEET-TCCEECTTTTT
T ss_pred CCCccCCEEECCCC-CCcc--cCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCC-CcCccCHHHHh
Confidence 57899999999985 4442 211 2345899999999985334321 1123566899999999985 44443344567
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCC
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (356)
.+++|++|+++++ .+.......+..+++|++|++++|.
T Consensus 196 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 196 SIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCc
Confidence 7899999999998 4655554555668999999998863
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.39 E-value=4.2e-12 Score=113.93 Aligned_cols=209 Identities=21% Similarity=0.253 Sum_probs=115.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhC
Q 018439 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (356)
.+++|+.|+++++. +.... ....+++|++|+++++ .++.... ...+++|++|+++++ .+++ +.. ...+
T Consensus 175 ~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~--~~~-l~~l 242 (466)
T 1o6v_A 175 NLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNN-QISDITP---LGILTNLDELSLNGN-QLKD--IGT-LASL 242 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCC--CGG-GGGC
T ss_pred cCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCC-ccccccc---ccccCCCCEEECCCC-Cccc--chh-hhcC
Confidence 44566666666553 22211 1345666666666665 3332211 235666777777664 2332 111 2346
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
++|+.|+++++ .++... . +..+++|+.|++.++. +... ..+..+++|++|+++++ .+.+. ..+..+++|+
T Consensus 243 ~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~ 312 (466)
T 1o6v_A 243 TNLTDLDLANN-QISNLA--P-LSGLTKLTELKLGANQ-ISNI--SPLAGLTALTNLELNEN-QLEDI--SPISNLKNLT 312 (466)
T ss_dssp TTCSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSSC-CCCC--GGGTTCTTCSEEECCSS-CCSCC--GGGGGCTTCS
T ss_pred CCCCEEECCCC-ccccch--h-hhcCCCCCEEECCCCc-cCcc--ccccCCCccCeEEcCCC-cccCc--hhhcCCCCCC
Confidence 77777777764 333211 1 4556777777777643 2221 11556777788887777 34332 2266777888
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceE
Q 018439 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMC 351 (356)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~ 351 (356)
+|++++|. +++... ...+++|+.|++++| .+++. ..+ ..+ ++|+.|++++|.-.. . .+ ...+++|+.
T Consensus 313 ~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l-~~l-~~L~~L~l~~n~l~~-~-~~--~~~l~~L~~ 379 (466)
T 1o6v_A 313 YLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDV--SSL-ANL-TNINWLSAGHNQISD-L-TP--LANLTRITQ 379 (466)
T ss_dssp EEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCC--GGG-TTC-TTCCEEECCSSCCCB-C-GG--GTTCTTCCE
T ss_pred EEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCc--hhh-ccC-CCCCEEeCCCCccCc-c-ch--hhcCCCCCE
Confidence 88887763 333221 345788888888876 44432 122 123 488888888775322 1 12 456788888
Q ss_pred eeec
Q 018439 352 FKVH 355 (356)
Q Consensus 352 l~l~ 355 (356)
|++.
T Consensus 380 L~l~ 383 (466)
T 1o6v_A 380 LGLN 383 (466)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7764
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=3e-14 Score=122.02 Aligned_cols=250 Identities=13% Similarity=0.086 Sum_probs=134.2
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|++|+++++. +.... ...+..+++|++|+++++. +.... ....++|++|+++++ .++.....
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n~-l~~l~----~~~~~~L~~L~l~~n-~l~~~~~~- 139 (330)
T 1xku_A 73 KNLKNLHTLILINNK-ISKIS-----PGAFAPLVKLERLYLSKNQ-LKELP----EKMPKTLQELRVHEN-EITKVRKS- 139 (330)
T ss_dssp TTCTTCCEEECCSSC-CCCBC-----TTTTTTCTTCCEEECCSSC-CSBCC----SSCCTTCCEEECCSS-CCCBBCHH-
T ss_pred ccCCCCCEEECCCCc-CCeeC-----HHHhcCCCCCCEEECCCCc-CCccC----hhhcccccEEECCCC-cccccCHh-
Confidence 445667777776653 22110 0113455677777776652 32111 012367777777766 44432222
Q ss_pred HHHhCCcCcEEeccCCCCCCHH-HHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (356)
.+..+++|++|++.++ .+... ........+++|++|+++++ .++. ++. ...++|++|+++++ .+.......+
T Consensus 140 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--l~~--~~~~~L~~L~l~~n-~l~~~~~~~~ 212 (330)
T 1xku_A 140 VFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITT--IPQ--GLPPSLTELHLDGN-KITKVDAASL 212 (330)
T ss_dssp HHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCS--CCS--SCCTTCSEEECTTS-CCCEECTGGG
T ss_pred HhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-cccc--CCc--cccccCCEEECCCC-cCCccCHHHh
Confidence 2346777888877764 33211 11122344777888887774 3332 110 11367888888774 3443334456
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH--
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSR-- 317 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-- 317 (356)
..+++|++|+++++ .++......+..+++|++|++++| .++. +......+++|+.|+++++ .++......+..
T Consensus 213 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 213 KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPG 287 (330)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSS
T ss_pred cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCC-cCCccChhhcCCcc
Confidence 67788888888887 455444445677788888888876 3331 1111234778888888876 454322211110
Q ss_pred --HccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 318 --FCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 318 --~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
...+.|+.|++.+++-......+.....++.++.+++.
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred cccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 01147888888887632211112233346667777654
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.38 E-value=1.2e-14 Score=130.88 Aligned_cols=252 Identities=19% Similarity=0.185 Sum_probs=138.3
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|++|+++++. +.... ...+..+++|++|+++++ .+..... .....+++|++|+++++ .++.... .
T Consensus 53 ~~l~~L~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~-~ 122 (477)
T 2id5_A 53 ASFPHLEELELNENI-VSAVE-----PGAFNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLTKLDISEN-KIVILLD-Y 122 (477)
T ss_dssp TTCTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCCEEECTTS-CCCEECT-T
T ss_pred cCCCCCCEEECCCCc-cCEeC-----hhhhhCCccCCEEECCCC-cCCccCc-ccccCCCCCCEEECCCC-ccccCCh-h
Confidence 456777777777653 22110 111345577777777765 2331111 11245677777777766 3332211 1
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (356)
.+..+++|++|++.++ .+...... ....+++|++|+++++ .++.. ....+..+++|+.|++.++ .+.......+.
T Consensus 123 ~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~ 197 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHL-NINAIRDYSFK 197 (477)
T ss_dssp TTTTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESC-CCCEECTTCSC
T ss_pred HccccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCC-cCcEeChhhcc
Confidence 1245677888877764 33221111 1234677888887774 34321 1233566778888888774 33322223345
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
.+++|++|+++++..+... ........+|++|++++| .++..... ....+++|+.|+++++ .++......+ ..+
T Consensus 198 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l- 271 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTM-TPNCLYGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYN-PISTIEGSML-HEL- 271 (477)
T ss_dssp SCTTCCEEEEECCTTCCEE-CTTTTTTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSS-CCCEECTTSC-TTC-
T ss_pred cCcccceeeCCCCcccccc-CcccccCccccEEECcCC-cccccCHH-HhcCccccCeeECCCC-cCCccChhhc-ccc-
Confidence 6778888888876433221 112223457888888875 44433222 2345889999999887 4543222112 123
Q ss_pred ccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 321 NTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 321 ~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
++|++|+++++. +... .+.....+++|+.|+++
T Consensus 272 ~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 272 LRLQEIQLVGGQ-LAVV-EPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp TTCCEEECCSSC-CSEE-CTTTBTTCTTCCEEECC
T ss_pred ccCCEEECCCCc-cceE-CHHHhcCcccCCEEECC
Confidence 489999998875 2211 12233467889998875
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=9.9e-15 Score=126.19 Aligned_cols=238 Identities=14% Similarity=0.070 Sum_probs=150.9
Q ss_pred CcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHH
Q 018439 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (356)
Q Consensus 80 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (356)
+..+++|++|+++++. +.... ...+..+++|++|+++++ .+..... .....+++|++|+++++ .++.....
T Consensus 72 ~~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~ 142 (353)
T 2z80_A 72 LQRCVNLQALVLTSNG-INTIE-----EDSFSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGET 142 (353)
T ss_dssp TTTCTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSS
T ss_pred hccCCCCCEEECCCCc-cCccC-----HhhcCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCch
Confidence 3567899999998764 33211 111456699999999987 3442222 23467899999999988 44432110
Q ss_pred HHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh
Q 018439 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (356)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (356)
..+..+++|++|++.++..+.... ......+++|++|+++++ .++.. ....+..+++|++|++.++. +........
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~ 218 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSHLILHMKQ-HILLLEIFV 218 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEEEEECSC-STTHHHHHH
T ss_pred hhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCC-CcCcc-CHHHHhccccCCeecCCCCc-cccchhhhh
Confidence 123568999999999864343311 112345889999999884 44421 12235668999999999853 444333344
Q ss_pred ccCCCCCEEecCCCCCCchHH---HHHhhcCCCCcEEecCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCCHHHHH
Q 018439 240 SLLAHLKFLDLCGAQNLSDEG---LACIAKCKNLVSLNLTWCVRITDVGVMAI---AEGCSSLEFLSLFGIVGVTDKCLE 313 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~ 313 (356)
..+++|++|+++++ .++... +......+.++.+++.++ .+++..+..+ ...+++|+.|+++++ .++....
T Consensus 219 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~- 294 (353)
T 2z80_A 219 DVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD- 294 (353)
T ss_dssp HHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-
T ss_pred hhcccccEEECCCC-ccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-
Confidence 56899999999998 444322 222334677889999875 6777655443 356889999999987 4552111
Q ss_pred HHHHHccccccEEecCCCCCcc
Q 018439 314 VLSRFCSNTLTTLDVNGCVGIK 335 (356)
Q Consensus 314 ~l~~~~~~~L~~L~l~~c~~~~ 335 (356)
.+...+ ++|++|++++++-..
T Consensus 295 ~~~~~l-~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 295 GIFDRL-TSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTTTTC-TTCCEEECCSSCBCC
T ss_pred HHHhcC-CCCCEEEeeCCCccC
Confidence 111223 489999999886443
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.37 E-value=2.2e-13 Score=124.92 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=33.9
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHH--HHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 292 GCSSLEFLSLFGIVGVTDKCLEVLS--RFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 292 ~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
.+++|+.|+++++ .+++....... ..+ ++|++|++++|.-..-.........+++|+.|+++
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSS-TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred cCccccEEEccCC-ccccccccchhhhhcc-ccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 4677777777776 46554332211 122 37777777776532211112334567777777664
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=1.6e-14 Score=129.12 Aligned_cols=228 Identities=17% Similarity=0.136 Sum_probs=147.4
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.++++.|+++++. +.... ...+..+++|+.|+++++ .+...... ....+++|++|+++++ .++.... ..+
T Consensus 74 ~~~l~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~ 143 (452)
T 3zyi_A 74 PSNTRYLNLMENN-IQMIQ-----ADTFRHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDN-WLTVIPS-GAF 143 (452)
T ss_dssp CTTCSEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSBCCT-TTS
T ss_pred CCCccEEECcCCc-CceEC-----HHHcCCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCC-cCCccCh-hhh
Confidence 3678999998764 32211 111456799999999986 44432211 2356899999999988 4443211 123
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|+++++ .+.... ......+++|+.|+++++..+.... ...+..+++|+.|+++++ .+.. ...+..+
T Consensus 144 ~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l 217 (452)
T 3zyi_A 144 EYLSKLRELWLRNN-PIESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMC-NIKD--MPNLTPL 217 (452)
T ss_dssp SSCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTS-CCSS--CCCCTTC
T ss_pred cccCCCCEEECCCC-CcceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCC-cccc--ccccccc
Confidence 46789999999985 444211 1123458999999998865554311 113556899999999985 3332 1245678
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcccc
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNT 322 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 322 (356)
++|++|+++++ .++......+..+++|++|++++| .++..... .+..+++|+.|+++++ .++......+ ..+ ++
T Consensus 218 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l-~~ 291 (452)
T 3zyi_A 218 VGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN-AFDGLASLVELNLAHN-NLSSLPHDLF-TPL-RY 291 (452)
T ss_dssp TTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTSS-TTC-TT
T ss_pred ccccEEECcCC-cCcccCcccccCccCCCEEEeCCC-cCceECHH-HhcCCCCCCEEECCCC-cCCccChHHh-ccc-cC
Confidence 89999999998 566554566788899999999986 44432212 2344789999999987 4553221111 122 48
Q ss_pred ccEEecCCCC
Q 018439 323 LTTLDVNGCV 332 (356)
Q Consensus 323 L~~L~l~~c~ 332 (356)
|++|++++++
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 9999998865
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=2.1e-14 Score=122.15 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=146.1
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
..+++++|+++++. +....... +..+++|++|+++++. +.... . ...+++|++|+++++ .++..
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n-~l~~l----- 95 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAAD-----LAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQEL----- 95 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHH-----HTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSS-EEEEE-----
T ss_pred cCCCCCEEECcCCc-cCcCCHHH-----hhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCC-ccccc-----
Confidence 45788999998764 33221111 3466889999998863 33211 1 456889999999887 44431
Q ss_pred HHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh-c
Q 018439 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI-S 240 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~ 240 (356)
...++|++|+++++ .++... ...+++|++|+++++ .++... ...+..+++|++|+++++ .+.......+ .
T Consensus 96 -~~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 166 (317)
T 3o53_A 96 -LVGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLN-EIDTVNFAELAA 166 (317)
T ss_dssp -EECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSS-CCCSGG-GBCTGGGSSEEEEECTTS-CCCEEEGGGGGG
T ss_pred -cCCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCC-CCCCcc-chhhhccCCCCEEECCCC-CCCcccHHHHhh
Confidence 24578899988875 443311 123678899998884 444311 112455788999999884 4443333333 3
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
.+++|++|+++++ .++.. .....+++|++|++++| .++..... ...+++|+.|+++++ .++. +......+
T Consensus 167 ~l~~L~~L~L~~N-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~~~~~~l- 236 (317)
T 3o53_A 167 SSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALRFS- 236 (317)
T ss_dssp GTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCCCC-
T ss_pred ccCcCCEEECCCC-cCccc--ccccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc--hhhHhhcC-
Confidence 6788999999888 44432 22334788999999885 44432111 334788999999887 4552 11111122
Q ss_pred ccccEEecCCCCCccHHHHHHHHhhCCcceEeee
Q 018439 321 NTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKV 354 (356)
Q Consensus 321 ~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l 354 (356)
++|+.|++++++ +....++.+...+++|+.+++
T Consensus 237 ~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 237 QNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCEEEccCCC-ccCcCHHHHHhccccceEEEC
Confidence 489999998886 343455666666777766554
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.36 E-value=7.5e-15 Score=125.37 Aligned_cols=222 Identities=20% Similarity=0.211 Sum_probs=137.5
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhC
Q 018439 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (356)
..++++.|+++++ .+. .+......+++|++|+++++ .++ .+...+..+++|++|+++++ .++. +......+
T Consensus 79 ~~~~l~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLP--QFPDQAFRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARN-PLRA--LPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESS-CCS--SCCSCGGGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESC-CCCC--CCGGGGGC
T ss_pred cccceeEEEccCC-Cch--hcChhhhhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCC-cccc--CcHHHhcC
Confidence 3478888888876 333 22222345788999999887 444 22233356788999998885 4442 33334568
Q ss_pred CCCcEEecCCCCCCChHHHHHH---------HhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHH
Q 018439 192 QELESLNLTRCVKLTDGGLQKI---------LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLA 262 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 262 (356)
++|++|++++|..... ++.. +..+++|++|++.++ .+. .....+..+++|++|+++++ .++. ...
T Consensus 150 ~~L~~L~L~~n~~~~~--~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~N-~l~~-l~~ 223 (328)
T 4fcg_A 150 NRLRELSIRACPELTE--LPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPASIANLQNLKSLKIRNS-PLSA-LGP 223 (328)
T ss_dssp TTCCEEEEEEETTCCC--CCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCGGGGGCTTCCEEEEESS-CCCC-CCG
T ss_pred cCCCEEECCCCCCccc--cChhHhhccchhhhccCCCCCEEECcCC-CcC-cchHhhcCCCCCCEEEccCC-CCCc-Cch
Confidence 8899998887533321 1111 224788899998874 333 22234667888999999888 4442 122
Q ss_pred HhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHH
Q 018439 263 CIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDEL 342 (356)
Q Consensus 263 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~ 342 (356)
.+..+++|++|++++|...+.. ......+++|+.|++++|...+.. ...+ ..+ ++|++|++++|.... .++..
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~-p~~~-~~l-~~L~~L~L~~n~~~~--~iP~~ 296 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTL-PLDI-HRL-TQLEKLDLRGCVNLS--RLPSL 296 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBC-CTTG-GGC-TTCCEEECTTCTTCC--CCCGG
T ss_pred hhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhc-chhh-hcC-CCCCEEeCCCCCchh--hccHH
Confidence 4677888999999887544321 112334788999999887543321 1111 223 488999998887544 24455
Q ss_pred HhhCCcceEeeec
Q 018439 343 LQLFPHLMCFKVH 355 (356)
Q Consensus 343 ~~~~p~L~~l~l~ 355 (356)
...+++|+.+.+.
T Consensus 297 l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 297 IAQLPANCIILVP 309 (328)
T ss_dssp GGGSCTTCEEECC
T ss_pred HhhccCceEEeCC
Confidence 5667888877653
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.35 E-value=6.7e-14 Score=122.71 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=30.4
Q ss_pred hccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
+..+++|++|+++++ .+.......+..+++|++|++++| .++.. ......+|+|+.|+++++
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEE--ECSSSCCTTCCEEECCSS
T ss_pred HcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCccc--CcccCCCCCCCEEECCCC
Confidence 445566666666665 344333334455566666666554 22221 011123456666666655
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=2.1e-14 Score=127.86 Aligned_cols=228 Identities=20% Similarity=0.162 Sum_probs=141.5
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.++++.|+++++. +.... ...+..+++|++|+++++ .+...... ....+++|++|+++++ .++.... ..+
T Consensus 63 ~~~l~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIK-----VNSFKHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-RLTTIPN-GAF 132 (440)
T ss_dssp CTTCSEEECCSCC-CCEEC-----TTTTSSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-CCSSCCT-TTS
T ss_pred CCCCcEEEccCCc-CCeeC-----HHHhhCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-cCCeeCH-hHh
Confidence 3678888888764 22211 111456789999999886 34432211 2356889999999887 4443211 123
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|+++++ .+.... ......+++|++|+++++..+.... ...+..+++|++|++.++ .+.. +..+..+
T Consensus 133 ~~l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l 206 (440)
T 3zyj_A 133 VYLSKLKELWLRNN-PIESIP-SYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC-NLRE--IPNLTPL 206 (440)
T ss_dssp CSCSSCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS-CCSS--CCCCTTC
T ss_pred hccccCceeeCCCC-cccccC-HHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC-cCcc--ccccCCC
Confidence 46789999999885 343211 1123357899999998764443211 123556889999999885 3321 1235677
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcccc
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNT 322 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 322 (356)
++|++|+++++ .++......+..+++|++|+++++ .++..... .+..+++|+.|+++++ .++......+ ..+ ++
T Consensus 207 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l-~~ 280 (440)
T 3zyj_A 207 IKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERN-AFDNLQSLVEINLAHN-NLTLLPHDLF-TPL-HH 280 (440)
T ss_dssp SSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTT-SSTTCTTCCEEECTTS-CCCCCCTTTT-SSC-TT
T ss_pred cccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChh-hhcCCCCCCEEECCCC-CCCccChhHh-ccc-cC
Confidence 89999999988 566544456777889999999875 44432211 2234788999999886 4553221111 122 48
Q ss_pred ccEEecCCCC
Q 018439 323 LTTLDVNGCV 332 (356)
Q Consensus 323 L~~L~l~~c~ 332 (356)
|+.|++++++
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999998765
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=7e-14 Score=129.32 Aligned_cols=104 Identities=14% Similarity=0.047 Sum_probs=50.5
Q ss_pred HhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 018439 238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSR 317 (356)
Q Consensus 238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 317 (356)
.+..+++|++|+++++ .+.......++.+++|++|++++| .++.. ......+|+|+.|++++| .++... ..+.
T Consensus 249 ~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~- 321 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHN-HLLHVE-RNQP- 321 (597)
T ss_dssp GGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCEE--ECSSSCCTTCCEEECCSS-CCCCCG-GGHH-
T ss_pred hhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCCC--CcccccCCCCcEEECCCC-CCCccC-cccc-
Confidence 3455667777777666 344433344556666666666664 33321 111123566666666665 333110 0111
Q ss_pred HccccccEEecCCCCCccHHHHHHHHhhCCcceEeee
Q 018439 318 FCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKV 354 (356)
Q Consensus 318 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l 354 (356)
.+ ++|++|++++|.-.. . + ...+++|+.|++
T Consensus 322 ~l-~~L~~L~L~~N~l~~-~--~--~~~~~~L~~L~l 352 (597)
T 3oja_B 322 QF-DRLENLYLDHNSIVT-L--K--LSTHHTLKNLTL 352 (597)
T ss_dssp HH-TTCSEEECCSSCCCC-C--C--CCTTCCCSEEEC
T ss_pred cC-CCCCEEECCCCCCCC-c--C--hhhcCCCCEEEe
Confidence 11 366666666654221 1 1 234555655554
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=3.3e-14 Score=128.09 Aligned_cols=232 Identities=17% Similarity=0.171 Sum_probs=108.6
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++|++|+++++. +.. +....+..+++|++|+++++. +.... ......+++|++|+++++ .++......
T Consensus 77 ~~l~~L~~L~L~~n~-l~~-----~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 147 (477)
T 2id5_A 77 NNLFNLRTLGLRSNR-LKL-----IPLGVFTGLSNLTKLDISENK-IVILL-DYMFQDLYNLKSLEVGDN-DLVYISHRA 147 (477)
T ss_dssp TTCTTCCEEECCSSC-CCS-----CCTTSSTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEEECCT-TCCEECTTS
T ss_pred hCCccCCEEECCCCc-CCc-----cCcccccCCCCCCEEECCCCc-cccCC-hhHccccccCCEEECCCC-ccceeChhh
Confidence 456778888887653 221 111113455778888887753 32111 112245677777777766 333221111
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCC-----------
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS----------- 229 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 229 (356)
+..+++|++|++.++ .++... ......+++|+.|+++++ .+.... ...+..+++|+.|++.++.
T Consensus 148 -~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 148 -FSGLNSLEQLTLEKC-NLTSIP-TEALSHLHGLIVLRLRHL-NINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp -STTCTTCCEEEEESC-CCSSCC-HHHHTTCTTCCEEEEESC-CCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred -ccCCCCCCEEECCCC-cCcccC-hhHhcccCCCcEEeCCCC-cCcEeC-hhhcccCcccceeeCCCCccccccCccccc
Confidence 235667777777764 333211 122334666666666653 222100 0112334555555554432
Q ss_pred ------------CCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 230 ------------GFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 230 ------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
.+.......+..+++|++|+++++ .++......+..+++|++|+++++ .++..... .+..+++|+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~ 299 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLR 299 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCC
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHH-HhcCcccCC
Confidence 222222223445556666666655 333333333445566666666654 23221111 122356666
Q ss_pred EEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 298 FLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 298 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
.|+++++ .++......+ ..+ ++|++|++++++
T Consensus 300 ~L~L~~N-~l~~~~~~~~-~~l-~~L~~L~l~~N~ 331 (477)
T 2id5_A 300 VLNVSGN-QLTTLEESVF-HSV-GNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSCCCGGGB-SCG-GGCCEEECCSSC
T ss_pred EEECCCC-cCceeCHhHc-CCC-cccCEEEccCCC
Confidence 6666665 3332111111 112 367777776654
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=5.8e-15 Score=137.11 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=95.0
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|+++++. +.. +......+++|+.|+++++ .+........+..+++|+.|+++++. +.......+..+
T Consensus 373 ~~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 447 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGL 447 (606)
T ss_dssp HCCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTTTTC
T ss_pred ccCCcccEeECCCCc-ccc--chhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccchhhhcCC
Confidence 345666666666542 221 1111223566666666664 22211111234456777777777643 322223345567
Q ss_pred CCCCEEecCCCCCCchH-HHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccc
Q 018439 243 AHLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSN 321 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 321 (356)
++|++|+++++ .+.+. ....+..+++|++|++++| .++..... ....+++|++|++++| .+++.....+. .+ +
T Consensus 448 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l-~ 521 (606)
T 3vq2_A 448 TSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHN-NLLFLDSSHYN-QL-Y 521 (606)
T ss_dssp TTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCEEGGGTT-TC-T
T ss_pred CCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCC-cCCCcCHHHcc-CC-C
Confidence 77888888777 34432 2334566788888888876 34332111 1234778888888876 45432222221 12 4
Q ss_pred cccEEecCCCCCccHHHHHHHHhhCC-cceEeeec
Q 018439 322 TLTTLDVNGCVGIKQRSRDELLQLFP-HLMCFKVH 355 (356)
Q Consensus 322 ~L~~L~l~~c~~~~~~~~~~~~~~~p-~L~~l~l~ 355 (356)
+|++|++++|. ++ .++.....+| +|+.|++.
T Consensus 522 ~L~~L~l~~N~-l~--~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 522 SLSTLDCSFNR-IE--TSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp TCCEEECTTSC-CC--CEESCGGGSCTTCCEEECC
T ss_pred cCCEEECCCCc-Cc--ccCHhHhhhcccCcEEEcc
Confidence 78888888875 33 1222244565 48887764
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=1.1e-12 Score=110.93 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=108.3
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
++++++|++.++. +.. +.. +..+++|+.|+++++ .+..... ...+++|++|+++++ .++.. .. +
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~-----~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEG-----VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNV--SA-I 103 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTT-----GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCC--GG-G
T ss_pred cCCcCEEEeeCCC-ccC--chh-----hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCc--hh-h
Confidence 5677777777653 222 111 345577888888776 3332221 456777888888777 34432 11 3
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|+++++ .+++ +.. ...+++|++|+++++ .++... . +..+++|+.|+++++ .+.+. ..+..+
T Consensus 104 ~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~--~~l~~l 172 (308)
T 1h6u_A 104 AGLQSIKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLN-QITNIS--P-LAGLTNLQYLSIGNA-QVSDL--TPLANL 172 (308)
T ss_dssp TTCTTCCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECCSS-CCCCC--GGGTTC
T ss_pred cCCCCCCEEECCCC-CCCC--chh-hcCCCCCCEEECCCC-ccCcCc--c-ccCCCCccEEEccCC-cCCCC--hhhcCC
Confidence 45677777777774 3433 122 344677777777774 443211 1 456777777777774 33321 125567
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
++|++|+++++ .+++.. .+..+++|++|++++| .+++.. . ...+++|+.|+++++
T Consensus 173 ~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 173 SKLTTLKADDN-KISDIS--PLASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp TTCCEEECCSS-CCCCCG--GGGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEE
T ss_pred CCCCEEECCCC-ccCcCh--hhcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCC
Confidence 77777777776 343321 2566777777777765 343322 1 234677777777765
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.33 E-value=2.4e-14 Score=132.96 Aligned_cols=254 Identities=17% Similarity=0.208 Sum_probs=163.1
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHH-HH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIG-IQ 159 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 159 (356)
..+++|++|+++++. +.... ...+..+++|++|+++++....... ......+++|++|+++++ .++... ..
T Consensus 298 ~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 369 (606)
T 3t6q_A 298 VGLSTLKKLVLSANK-FENLC-----QISASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELDLSHD-DIETSDCCN 369 (606)
T ss_dssp CSCTTCCEEECTTCC-CSBGG-----GGCGGGCTTCSEEECCSCSSCCBCC-SSTTTTCTTCCEEECCSS-CCCEEEEST
T ss_pred cccccCCEEECccCC-cCcCc-----hhhhhccCcCCEEECCCCCcccccc-hhhhhccCcCCEEECCCC-ccccccCcc
Confidence 456899999999874 32211 1114567999999999874221111 112356899999999988 444322 01
Q ss_pred HHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh
Q 018439 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (356)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (356)
..+..+++|++|+++++. +... .......+++|++|+++++ .+........+..+++|+.|++.++ .+.......+
T Consensus 370 ~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 445 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLF 445 (606)
T ss_dssp TTTTTCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTT
T ss_pred hhcccCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHH
Confidence 123578999999999863 3321 1122345899999999985 4332111223567899999999985 3433334456
Q ss_pred ccCCCCCEEecCCCCCCchHHH---HHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGL---ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLS 316 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 316 (356)
..+++|++|+++++ .+++..+ ..+..+++|++|++++| .++...... ...+++|+.|+++++ .+++.....+.
T Consensus 446 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~ 521 (606)
T 3t6q_A 446 DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHA-FTSLKMMNHVDLSHN-RLTSSSIEALS 521 (606)
T ss_dssp TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCGGGGGGGT
T ss_pred hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhh-hccccCCCEEECCCC-ccCcCChhHhC
Confidence 67899999999999 4544222 34677899999999987 444322222 245899999999997 67665444433
Q ss_pred HHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 317 RFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 317 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
.. ++| +|++++|. ++. ..+.....+++|+.++++
T Consensus 522 ~l--~~L-~L~L~~N~-l~~-~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 522 HL--KGI-YLNLASNH-ISI-ILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TC--CSC-EEECCSSC-CCC-CCGGGHHHHHTSSEEECT
T ss_pred cc--ccc-EEECcCCc-ccc-cCHhhcccCCCCCEEeCC
Confidence 22 478 99999885 331 123333456778888765
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=8.7e-15 Score=135.89 Aligned_cols=231 Identities=14% Similarity=0.102 Sum_probs=144.8
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHH-HHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
+++|++|++.++...... ....+++|++|+++++. +.... .......+++|++|+++++ .++... ..
T Consensus 327 l~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~--~~ 394 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS--AN 394 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEEC--CC
T ss_pred CCccceeeccCCcCccch--------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccch--hh
Confidence 455566666554333221 14566888888888763 32111 1223467899999999887 333221 22
Q ss_pred HHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChH-HHHHhc
Q 018439 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKIS 240 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~ 240 (356)
+..+++|++|++.++. +...........+++|+.|+++++ .+.. ..+..+..+++|++|++.++ .+.+. ....+.
T Consensus 395 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 470 (606)
T 3vq2_A 395 FMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYT-NTKI-DFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFA 470 (606)
T ss_dssp CTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTS-CCEE-CCTTTTTTCTTCCEEECTTC-EEGGGEECSCCT
T ss_pred ccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCC-CCCc-cchhhhcCCCCCCEEECCCC-cCCCcchHHhhc
Confidence 3468999999999853 322111122345899999999985 3332 12233567899999999985 33321 233456
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
.+++|++|++++| .++......+..+++|++|++++| .+++.... ....+++|+.|++++| .++..... ....+
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~ 544 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFN-RIETSKGI--LQHFP 544 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTS-CCCCEESC--GGGSC
T ss_pred cCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCC-cCcccCHh--Hhhhc
Confidence 7899999999999 566554556778999999999987 44432212 2334789999999997 45521111 22223
Q ss_pred ccccEEecCCCCCcc
Q 018439 321 NTLTTLDVNGCVGIK 335 (356)
Q Consensus 321 ~~L~~L~l~~c~~~~ 335 (356)
.+|++|++++++-..
T Consensus 545 ~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 545 KSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTCCEEECCSCCCCC
T ss_pred ccCcEEEccCCCccc
Confidence 369999999876443
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.33 E-value=5.5e-14 Score=123.25 Aligned_cols=243 Identities=20% Similarity=0.180 Sum_probs=122.7
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
+++|++|++.++. +.... ...+..+++|++|+++++. +..... .....+++|++|+++++ .++... ..++
T Consensus 68 l~~L~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~-~~~~ 137 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEID-----TYAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSSLP-RGIF 137 (390)
T ss_dssp CCCCSEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred cccCcEEECCCCc-ccccC-----hhhccCCCCcCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCC-ccCcCC-HHHh
Confidence 4566677776553 22110 0113445677777776652 222111 11245667777777766 333211 1112
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHH----H--
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEA----Y-- 236 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~-- 236 (356)
..+++|++|+++++ .+... .......+++|++|+++++ .++... ...+++|+.|++.++ .+.... +
T Consensus 138 ~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~L~~ 209 (390)
T 3o6n_A 138 HNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYN-LLSTLAIPIAVEE 209 (390)
T ss_dssp TTCTTCCEEECCSS-CCCBC-CTTTTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSS-CCSEEECCSSCSE
T ss_pred cCCCCCcEEECCCC-ccCcc-ChhhccCCCCCCEEECCCC-cCCccc----cccccccceeecccc-cccccCCCCcceE
Confidence 35667777777764 23221 0111234667777777763 343221 233455555555442 111000 0
Q ss_pred --------H--HhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 018439 237 --------K--KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVG 306 (356)
Q Consensus 237 --------~--~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (356)
. .....++|++|+++++ .+++. ..+..+++|++|++++| .+++.... ....+++|+.|+++++ .
T Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~ 283 (390)
T 3o6n_A 210 LDASHNSINVVRGPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-R 283 (390)
T ss_dssp EECCSSCCCEEECCCCSSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-C
T ss_pred EECCCCeeeeccccccccccEEECCCC-CCccc--HHHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-c
Confidence 0 0012346777777776 34432 45677889999999886 44432112 2234789999999886 4
Q ss_pred CCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 307 VTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 307 ~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
++... ...... ++|++|++++|. +.. ++.....+++|+.|+++
T Consensus 284 l~~~~--~~~~~l-~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 284 LVALN--LYGQPI-PTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLD 326 (390)
T ss_dssp CCEEE--CSSSCC-TTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECC
T ss_pred CcccC--cccCCC-CCCCEEECCCCc-cee--cCccccccCcCCEEECC
Confidence 44311 001112 488888888875 321 22222346777777664
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=4.9e-14 Score=119.85 Aligned_cols=215 Identities=15% Similarity=0.129 Sum_probs=146.0
Q ss_pred cccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHH
Q 018439 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 189 (356)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 189 (356)
...+++|++|+++++ .+..... .....+++|++|+++++ .++... . +..+++|++|+++++ .++.. .
T Consensus 30 ~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n-~l~~l------~ 96 (317)
T 3o53_A 30 RQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNN-YVQEL------L 96 (317)
T ss_dssp HTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSS-EEEEE------E
T ss_pred hccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCC-ccccc------c
Confidence 445689999999997 4443322 23467899999999988 443221 1 457899999999985 44431 1
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHh-hcCC
Q 018439 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI-AKCK 268 (356)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~ 268 (356)
..++|++|+++++ .++... ...+++|++|++.++ .+.......+..+++|++|+++++ .++......+ ..++
T Consensus 97 ~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169 (317)
T ss_dssp ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT
T ss_pred CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccC
Confidence 3589999999985 554321 234789999999985 444433334557899999999998 5655444444 4689
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCc
Q 018439 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPH 348 (356)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~ 348 (356)
+|++|++++| .++.. ... ..+++|+.|+++++ .++..... + ..+ ++|++|++++|. +.. ++.....+++
T Consensus 170 ~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~l~~~-~-~~l-~~L~~L~L~~N~-l~~--l~~~~~~l~~ 238 (317)
T 3o53_A 170 TLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPE-F-QSA-AGVTWISLRNNK-LVL--IEKALRFSQN 238 (317)
T ss_dssp TCCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEECGG-G-GGG-TTCSEEECTTSC-CCE--ECTTCCCCTT
T ss_pred cCCEEECCCC-cCccc--ccc-cccccCCEEECCCC-cCCcchhh-h-ccc-CcccEEECcCCc-ccc--hhhHhhcCCC
Confidence 9999999986 44432 111 13789999999997 55532111 2 223 599999999985 332 3333456889
Q ss_pred ceEeeec
Q 018439 349 LMCFKVH 355 (356)
Q Consensus 349 L~~l~l~ 355 (356)
|+.|+++
T Consensus 239 L~~L~l~ 245 (317)
T 3o53_A 239 LEHFDLR 245 (317)
T ss_dssp CCEEECT
T ss_pred CCEEEcc
Confidence 9999875
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=1.1e-14 Score=129.71 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=149.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++++.|+++++ .+...... ....+++|+.|+++++ .++..... .+..+++|++|+++++ .++... ......+++
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVN-SFKHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-RLTTIP-NGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSC-CCCEECTT-TTSSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-CCSSCC-TTTSCSCSS
T ss_pred CCCcEEEccCC-cCCeeCHH-HhhCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-cCCeeC-HhHhhcccc
Confidence 68999999986 34432222 2357899999999988 55433222 2357899999999985 444311 112345799
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|++|+++++ .++.. ....+..+++|++|++.++..+.......+..+++|++|+++++ .++. +..+..+++|++|
T Consensus 138 L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l~~L~~L 212 (440)
T 3zyj_A 138 LKELWLRNN-PIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IPNLTPLIKLDEL 212 (440)
T ss_dssp CCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CCCCTTCSSCCEE
T ss_pred CceeeCCCC-ccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--ccccCCCcccCEE
Confidence 999999984 45421 11235678999999999866655433344667899999999998 4543 2346778999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEee
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFK 353 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~ 353 (356)
++++| .++..... .+..+++|+.|+++++ .++......+. .+ ++|++|+++++. ++.. .......+++|+.|+
T Consensus 213 ~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l-~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 213 DLSGN-HLSAIRPG-SFQGLMHLQKLWMIQS-QIQVIERNAFD-NL-QSLVEINLAHNN-LTLL-PHDLFTPLHHLERIH 285 (440)
T ss_dssp ECTTS-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTSST-TC-TTCCEEECTTSC-CCCC-CTTTTSSCTTCCEEE
T ss_pred ECCCC-ccCccChh-hhccCccCCEEECCCC-ceeEEChhhhc-CC-CCCCEEECCCCC-CCcc-ChhHhccccCCCEEE
Confidence 99986 45432222 2345899999999987 55543222222 22 499999999985 3311 123335678999988
Q ss_pred ec
Q 018439 354 VH 355 (356)
Q Consensus 354 l~ 355 (356)
++
T Consensus 286 L~ 287 (440)
T 3zyj_A 286 LH 287 (440)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=1.7e-14 Score=129.01 Aligned_cols=224 Identities=17% Similarity=0.130 Sum_probs=149.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++++.|+++++ .+...... ....+++|+.|+++++ .++..... .+..+++|++|+++++ .++... ......+++
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQAD-TFRHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDN-WLTVIP-SGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSBCC-TTTSSSCTT
T ss_pred CCccEEECcCC-cCceECHH-HcCCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCC-cCCccC-hhhhcccCC
Confidence 68999999986 44432211 2357899999999988 55543222 2346899999999985 444311 122335899
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|++|+++++ .++.. ....+..+++|+.|++.++..+.......+..+++|++|+++++ .++.. ..+..+++|++|
T Consensus 149 L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L 223 (452)
T 3zyi_A 149 LRELWLRNN-PIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM--PNLTPLVGLEEL 223 (452)
T ss_dssp CCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSC--CCCTTCTTCCEE
T ss_pred CCEEECCCC-Cccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccc--ccccccccccEE
Confidence 999999984 55421 11235678999999999876655433344667899999999998 45432 346778999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEee
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFK 353 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~ 353 (356)
++++| .++.... ..+..+++|+.|+++++ .++......+. .+ ++|++|+++++. ++. ........+++|+.|+
T Consensus 224 ~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l-~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 224 EMSGN-HFPEIRP-GSFHGLSSLKKLWVMNS-QVSLIERNAFD-GL-ASLVELNLAHNN-LSS-LPHDLFTPLRYLVELH 296 (452)
T ss_dssp ECTTS-CCSEECG-GGGTTCTTCCEEECTTS-CCCEECTTTTT-TC-TTCCEEECCSSC-CSC-CCTTSSTTCTTCCEEE
T ss_pred ECcCC-cCcccCc-ccccCccCCCEEEeCCC-cCceECHHHhc-CC-CCCCEEECCCCc-CCc-cChHHhccccCCCEEE
Confidence 99986 4443222 22345899999999987 45532222222 23 499999999984 331 1123335688999998
Q ss_pred ec
Q 018439 354 VH 355 (356)
Q Consensus 354 l~ 355 (356)
++
T Consensus 297 L~ 298 (452)
T 3zyi_A 297 LH 298 (452)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=9.7e-13 Score=119.83 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=60.7
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCch--HHHHHhhcCCCCcEEecCCCCCCCH-HHHHHHHhc
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD--EGLACIAKCKNLVSLNLTWCVRITD-VGVMAIAEG 292 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~ 292 (356)
.+++|++|+++++ .+.+.....+..+++|++|+++++ .++. .....+..+++|++|++++|. ++. .. ......
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~-~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEK-KGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGG-GCSCCC
T ss_pred hCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccc-cchhcc
Confidence 4566666776663 333333334456667777777766 3443 222345566677777776643 222 11 111223
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeee
Q 018439 293 CSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKV 354 (356)
Q Consensus 293 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l 354 (356)
+++|+.|++++| .+++..... .+++|++|++++|. ++ .++.....+++|+.|++
T Consensus 398 l~~L~~L~Ls~N-~l~~~~~~~----l~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 398 TKSLLSLNMSSN-ILTDTIFRC----LPPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNV 451 (520)
T ss_dssp CTTCCEEECCSS-CCCGGGGGS----CCTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEEC
T ss_pred CccCCEEECcCC-CCCcchhhh----hcccCCEEECCCCc-cc--ccchhhhcCCCCCEEEC
Confidence 455666666554 333221111 11356666665553 22 12222224555555554
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=2.6e-13 Score=113.62 Aligned_cols=208 Identities=20% Similarity=0.171 Sum_probs=136.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCC
Q 018439 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (356)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 192 (356)
.++|++|+++++ .+...... ....+++|++|+++++ .++..... .+..+++|++|+++++..+.... ......++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVD-PATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCC-TTTTTTCT
T ss_pred CCCceEEEeeCC-cCCccCHH-HcccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccC-HHHhcCCc
Confidence 368999999986 44432211 2356899999999987 55433211 23468999999999864243311 12234588
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcE
Q 018439 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (356)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (356)
+|++|+++++ .++.. ....+..+++|++|++.++ .+.......+..+++|++|+++++ .++......+..+++|++
T Consensus 106 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQEL-GPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCC-cCCEE-CHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCE
Confidence 9999999985 44321 1223567899999999985 333322234567889999999998 565444445777899999
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCc
Q 018439 273 LNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGI 334 (356)
Q Consensus 273 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~ 334 (356)
|++++| .+++..... ...+++|+.|+++++ .+++.....+. .+ ++|++|++++++-.
T Consensus 182 L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l-~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 182 LLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALA-PL-RALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHT-TC-TTCCEEECCSSCEE
T ss_pred EECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcc-cC-cccCEEeccCCCcc
Confidence 999986 444332222 234789999999987 56543333332 23 49999999987643
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.31 E-value=8.1e-13 Score=117.83 Aligned_cols=245 Identities=14% Similarity=0.125 Sum_probs=149.0
Q ss_pred eEeccccccchhhhHHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhC
Q 018439 60 LVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 139 (356)
Q Consensus 60 ~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 139 (356)
+.++++....... . .+..+++|++|+++++. +..- . +..+++|++|+++++. +.... ...+
T Consensus 45 ~~L~Ls~n~l~~~---~--~l~~l~~L~~L~Ls~n~-l~~~-----~---~~~l~~L~~L~Ls~N~-l~~~~----~~~l 105 (457)
T 3bz5_A 45 TSLDCHNSSITDM---T--GIEKLTGLTKLICTSNN-ITTL-----D---LSQNTNLTYLACDSNK-LTNLD----VTPL 105 (457)
T ss_dssp CEEECCSSCCCCC---T--TGGGCTTCSEEECCSSC-CSCC-----C---CTTCTTCSEEECCSSC-CSCCC----CTTC
T ss_pred CEEEccCCCcccC---h--hhcccCCCCEEEccCCc-CCeE-----c---cccCCCCCEEECcCCC-Cceee----cCCC
Confidence 5666665532211 1 23557888888888764 3331 0 4566888888888863 44322 3567
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
++|++|+++++ .++... +..+++|++|+++++ .++.. . ...+++|+.|+++++..+... -+..+++
T Consensus 106 ~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l--~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~ 171 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEI--D--VSHNTQLTELDCHLNKKITKL----DVTPQTQ 171 (457)
T ss_dssp TTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCC--C--CTTCTTCCEEECTTCSCCCCC----CCTTCTT
T ss_pred CcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-cccee--c--cccCCcCCEEECCCCCccccc----ccccCCc
Confidence 88888888887 555432 356788888888874 44432 1 345788888888886444432 1445788
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 299 (356)
|+.|+++++ .+... .+..+++|+.|+++++ .++.. .++.+++|++|++++| .++... ...+++|+.|
T Consensus 172 L~~L~ls~n-~l~~l---~l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~L 238 (457)
T 3bz5_A 172 LTTLDCSFN-KITEL---DVSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSN-KLTEID----VTPLTQLTYF 238 (457)
T ss_dssp CCEEECCSS-CCCCC---CCTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSS-CCSCCC----CTTCTTCSEE
T ss_pred CCEEECCCC-cccee---ccccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCC-cccccC----ccccCCCCEE
Confidence 889988885 33331 1567788999999888 45443 3677888999999885 454422 3457889999
Q ss_pred EecCCCCCCHHHHHHHHHH-----ccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 300 SLFGIVGVTDKCLEVLSRF-----CSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 300 ~l~~~~~~~~~~~~~l~~~-----~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+++++ .+++.....+... ...+|+.|++++|..... ++ ...+++|+.|+++
T Consensus 239 ~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~--~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 239 DCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY--FQ--AEGCRKIKELDVT 294 (457)
T ss_dssp ECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE--EE--CTTCTTCCCCCCT
T ss_pred EeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc--cc--ccccccCCEEECC
Confidence 99886 4544221111000 001344555555543221 11 2356888887764
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=3e-14 Score=120.90 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=114.4
Q ss_pred hCCCccEEEeecCCccCHHHHHHH-HHhCCcCcEEeccCCCCCCHH--HHHHHHH-hCCCCcEEecCCCCCCChHHHHHH
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHL-VKNCKHIIDLNLSGCKNLLDK--SLQLIAD-NYQELESLNLTRCVKLTDGGLQKI 213 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~ 213 (356)
.+++|++|+++++ .++......+ ...+++|++|+++++ .++.. .+..+.. ..++|++|+++++ .++.. ....
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~-~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNF-SCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCC-CTTT
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccc-hHHH
Confidence 4678888888877 4432211111 245778888888874 34332 1222211 1278888888774 44321 1123
Q ss_pred HhcCCCCcEEEcCCCCCCChH--HHHHh--ccCCCCCEEecCCCCCCc---hHHHHHhhcCCCCcEEecCCCCCCCHHHH
Q 018439 214 LIKCSSLRSLNLYALSGFTDE--AYKKI--SLLAHLKFLDLCGAQNLS---DEGLACIAKCKNLVSLNLTWCVRITDVGV 286 (356)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 286 (356)
+..+++|++|+++++. +... ....+ ..+++|++|+++++ .++ ......+..+++|++|++++| .+++...
T Consensus 169 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 245 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAG 245 (312)
T ss_dssp CCCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC
T ss_pred hccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccc
Confidence 4567888888888753 3322 22333 57788888888888 455 222233456788888888875 3433211
Q ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 287 MAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 287 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
......+++|+.|+++++ .++. +....+++|++|+++++. ++.. +. ...+++|+.|++.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~-----ip~~~~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQ-----VPKGLPAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLK 304 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSS-----CCSSCCSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECT
T ss_pred hhhhhhcCCCCEEECCCC-ccCh-----hhhhccCCceEEECCCCC-CCCC--hh-HhhCCCCCEEecc
Confidence 111223578888888876 4441 111111478888888875 3321 23 4567888888765
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.31 E-value=3e-12 Score=117.35 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=29.8
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHH--HhcCCCCCEEEecCCCCCCHHHH-HHHHHHccccccEEecCCC
Q 018439 266 KCKNLVSLNLTWCVRITDVGVMAI--AEGCSSLEFLSLFGIVGVTDKCL-EVLSRFCSNTLTTLDVNGC 331 (356)
Q Consensus 266 ~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~~L~~L~l~~c 331 (356)
.+++|++|++++| .+++...... ...+++|+.|++++| .++.... ......+ ++|++|++++|
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l-~~L~~L~Ls~N 397 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL-KNLTSLDISRN 397 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC-TTCCEEECTTC
T ss_pred cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcC-CCCCEEECCCC
Confidence 4566666666654 4444322111 233566666666665 3433211 1112222 36666666665
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=7.8e-14 Score=125.51 Aligned_cols=236 Identities=17% Similarity=0.137 Sum_probs=148.3
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
.+++|++|+++++. +... ....+..+++|+.|+++++. ++.... ...+++|++|+++++ .++..
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l----- 95 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQI-----SAADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQEL----- 95 (487)
T ss_dssp TGGGCCEEECCSSC-CCCC-----CGGGGTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEE-----
T ss_pred cCCCccEEEeeCCc-CCCC-----CHHHHhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCC-----
Confidence 45689999998764 3221 11114567899999998874 332111 467889999999988 55432
Q ss_pred HHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc-
Q 018439 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS- 240 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~- 240 (356)
...++|++|+++++ .++.... ..+++|+.|+++++ .++.. .+..+..+++|+.|+++++ .+.......+.
T Consensus 96 -~~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~ 166 (487)
T 3oja_A 96 -LVGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAA 166 (487)
T ss_dssp -EECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSS-CCCSG-GGBCGGGGSSEEEEECTTS-CCCEEEGGGGGG
T ss_pred -CCCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCC-CCCCC-CchhhcCCCCCCEEECCCC-CCCCcChHHHhh
Confidence 23488999999885 3433111 23688999999884 45431 1223456789999999884 45443344444
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
.+++|++|+++++ .++.. .....+++|++|++++| .++.... . ...+++|+.|+++++ .++. +......+
T Consensus 167 ~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l- 236 (487)
T 3oja_A 167 SSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSN-KLAFMGP-E-FQSAAGVTWISLRNN-KLVL--IEKALRFS- 236 (487)
T ss_dssp GTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSS-CCCEECG-G-GGGGTTCSEEECTTS-CCCE--ECTTCCCC-
T ss_pred hCCcccEEecCCC-ccccc--cccccCCCCCEEECCCC-CCCCCCH-h-HcCCCCccEEEecCC-cCcc--cchhhccC-
Confidence 6789999999988 45432 23345788999999886 4543211 1 334788999999987 4553 11111122
Q ss_pred ccccEEecCCCCCccHHHHHHHHhhCCcceEee
Q 018439 321 NTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFK 353 (356)
Q Consensus 321 ~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~ 353 (356)
++|+.|++++++ +....++.+...++.|+.+.
T Consensus 237 ~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 237 QNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp TTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHH
T ss_pred CCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEe
Confidence 489999999886 34344555565666665544
No 55
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=1.6e-13 Score=116.25 Aligned_cols=228 Identities=17% Similarity=0.096 Sum_probs=139.6
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHH-HhCCCccEEEeecCCccCHH----HH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS-STCPELKVFSIYWNVRVTDI----GI 158 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~ 158 (356)
..++.+.+.... +.+..+..+.... ..++|++|+++++. +.......+. ..+++|++|+++++ .++.. ..
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~ 138 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVL--AYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE 138 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHH--HHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhc--ccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH
Confidence 456778887663 5565555554422 33679999998873 3221111111 56789999999988 55431 11
Q ss_pred HHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCCh-HHHHH--HHhcCCCCcEEEcCCCCCCC--h
Q 018439 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQK--ILIKCSSLRSLNLYALSGFT--D 233 (356)
Q Consensus 159 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~--~ 233 (356)
..+ ..+++|++|+++++ .+... .......+++|++|+++++ .+.. ..+.. ....+++|++|+++++ .+. .
T Consensus 139 ~~~-~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 213 (310)
T 4glp_A 139 LQQ-WLKPGLKVLSIAQA-HSPAF-SCEQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPT 213 (310)
T ss_dssp HHT-TBCSCCCEEEEECC-SSCCC-CTTSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHH
T ss_pred HHh-hhccCCCEEEeeCC-Ccchh-hHHHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchH
Confidence 122 36889999999985 34321 1122235789999999985 4432 22221 1246789999999985 443 2
Q ss_pred HHHH-HhccCCCCCEEecCCCCCCchHHHHHhhcC---CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH
Q 018439 234 EAYK-KISLLAHLKFLDLCGAQNLSDEGLACIAKC---KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTD 309 (356)
Q Consensus 234 ~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 309 (356)
.... .+..+++|++|+++++ .+++.....+..+ ++|++|++++| .++.. .. ...++|+.|+++++ .++.
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l--p~--~~~~~L~~L~Ls~N-~l~~ 286 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV--PK--GLPAKLRVLDLSSN-RLNR 286 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC--CS--CCCSCCSCEECCSC-CCCS
T ss_pred HHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCch--hh--hhcCCCCEEECCCC-cCCC
Confidence 2222 2357789999999998 4554322334444 79999999986 44421 11 11378999999987 5553
Q ss_pred HHHHHHHHHccccccEEecCCCC
Q 018439 310 KCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 310 ~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
... ...+ ++|+.|++++++
T Consensus 287 ~~~---~~~l-~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 APQ---PDEL-PEVDNLTLDGNP 305 (310)
T ss_dssp CCC---TTSC-CCCSCEECSSTT
T ss_pred Cch---hhhC-CCccEEECcCCC
Confidence 211 1223 599999999875
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=5.5e-12 Score=106.64 Aligned_cols=188 Identities=23% Similarity=0.274 Sum_probs=100.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|++|+++++ .+... .. ...+++|++|+++++ .++.... +..+++|++|+++++ .++. +.. ...+++
T Consensus 41 ~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~ 108 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKN--VSA-IAGLQS 108 (308)
T ss_dssp HTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSC--CGG-GTTCTT
T ss_pred CCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCC--chh-hcCCCC
Confidence 56777777665 23321 11 345677777777766 4433221 345677777777764 3333 111 234667
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|++|+++++ .++. +.. +..+++|++|+++++. +... ..+..+++|++|+++++ .+++. ..+..+++|++|
T Consensus 109 L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLNQ-ITNI--SPLAGLTNLQYLSIGNA-QVSDL--TPLANLSKLTTL 178 (308)
T ss_dssp CCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSSC-CCCC--GGGGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEE
T ss_pred CCEEECCCC-CCCC--chh-hcCCCCCCEEECCCCc-cCcC--ccccCCCCccEEEccCC-cCCCC--hhhcCCCCCCEE
Confidence 777777764 3432 111 4556777777776642 2221 11556667777777766 34432 125666777777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
++++| .+++... ...+++|+.|+++++ .+++.. .+ ..+ ++|++|++++++
T Consensus 179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~l-~~l-~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS--PL-ANT-SNLFIVTLTNQT 228 (308)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG--GG-TTC-TTCCEEEEEEEE
T ss_pred ECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCccc--cc-cCC-CCCCEEEccCCe
Confidence 77664 3332211 334667777777765 343222 11 222 367777776653
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=1.2e-14 Score=123.18 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=137.3
Q ss_pred cccCCccEeecCCCCCCchHH--HHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI 158 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 158 (356)
..+++|++|+++++. +.... ... ...+++|++|+++++. +.. +......+++|++|+++++ .++....
T Consensus 49 ~~l~~L~~L~L~~n~-l~~~~~~~~~-----~~~~~~L~~L~Ls~n~-i~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~ 118 (306)
T 2z66_A 49 DKLTQLTKLSLSSNG-LSFKGCCSQS-----DFGTTSLKYLDLSFNG-VIT--MSSNFLGLEQLEHLDFQHS-NLKQMSE 118 (306)
T ss_dssp TTCTTCSEEECCSSC-CCEEEEEEHH-----HHSCSCCCEEECCSCS-EEE--EEEEEETCTTCCEEECTTS-EEESSTT
T ss_pred hccccCCEEECCCCc-cCcccCcccc-----cccccccCEEECCCCc-ccc--ChhhcCCCCCCCEEECCCC-ccccccc
Confidence 567899999999874 32110 011 1245899999999873 321 1111356899999999987 4443222
Q ss_pred HHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHH
Q 018439 159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK 238 (356)
Q Consensus 159 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (356)
...+..+++|++|+++++ .+... .......+++|++|+++++ .++...++..+..+++|++|+++++ .+.......
T Consensus 119 ~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 194 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 194 (306)
T ss_dssp TTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred chhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence 122457899999999985 33321 1222345899999999985 4443223334567899999999985 444443445
Q ss_pred hccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcC-CCCCEEEecCCC
Q 018439 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC-SSLEFLSLFGIV 305 (356)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~ 305 (356)
+..+++|++|+++++ .++......+..+++|++|++++| .++......+. .+ ++|+.|++++++
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCC
Confidence 668899999999998 455443445677899999999986 44432222222 35 489999999975
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=1e-13 Score=129.06 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=73.9
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHh------CCCccEEEeecCCccCH
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST------CPELKVFSIYWNVRVTD 155 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~ 155 (356)
.+++|++|+++++..... .. ..+..+++|++|+++++..++...++..... +++|++|+++++ .++
T Consensus 247 ~l~~L~~L~L~~n~l~~~-~p-----~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~- 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK-LP-----TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK- 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSS-CC-----TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS-
T ss_pred ccCCCCEEEecCCcCCcc-Ch-----HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC-
Confidence 678899999987642221 10 1145678899999988743554233332333 488999999887 555
Q ss_pred HHHHH--HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC-CcEEEcCC
Q 018439 156 IGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS-LRSLNLYA 227 (356)
Q Consensus 156 ~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~ 227 (356)
.++. .+..+++|++|+++++ .++. .++ ....+++|+.|+++++ .++ .++..+..+++ |++|++++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N-~l~g-~ip-~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYN-QLEG-KLP-AFGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSC-CCEE-ECC-CCEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCS
T ss_pred -ccCchhhhccCCCCCEEeCcCC-cCcc-chh-hhCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccC
Confidence 2322 3457788888888875 3331 011 1223456666666653 222 12222334455 66666655
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=1.8e-13 Score=126.65 Aligned_cols=243 Identities=20% Similarity=0.190 Sum_probs=126.1
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
+++|++|++.++. +... ....+..+++|+.|+++++. +.... ......+++|++|+++++ .++... ..++
T Consensus 74 l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~ 143 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEI-----DTYAFAYAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERN-DLSSLP-RGIF 143 (597)
T ss_dssp CCCCSEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred CCCCcEEECCCCC-CCCC-----ChHHhcCCCCCCEEECCCCc-CCCCC-HHHHcCCCCCCEEEeeCC-CCCCCC-HHHh
Confidence 4566666666553 2211 01113455677777776652 32211 112245667777777766 333211 1112
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHH-------
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEA------- 235 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------- 235 (356)
..+++|++|+++++ .++.. .......+++|++|+++++ .++... ...+++|+.|++.++ .+....
T Consensus 144 ~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n-~l~~l~~~~~L~~ 215 (597)
T 3oja_B 144 HNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYN-LLSTLAIPIAVEE 215 (597)
T ss_dssp TTCTTCCEEECCSS-CCCBC-CTTTTTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSS-CCSEEECCTTCSE
T ss_pred ccCCCCCEEEeeCC-cCCCC-ChhhhhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccC-ccccccCCchhhe
Confidence 45667777777664 23221 1111234667777777763 333211 233555555555542 111000
Q ss_pred -------HHHh--ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 018439 236 -------YKKI--SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVG 306 (356)
Q Consensus 236 -------~~~l--~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 306 (356)
+..+ ...++|+.|+++++ .+++ ...+..+++|++|++++| .++...... +..+++|+.|+++++ .
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~~--~~~l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~ 289 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHN-NLTD--TAWLLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQRLERLYISNN-R 289 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSS-CCCEEESGG-GTTCSSCCEEECTTS-C
T ss_pred eeccCCcccccccccCCCCCEEECCCC-CCCC--ChhhccCCCCCEEECCCC-ccCCCCHHH-hcCccCCCEEECCCC-C
Confidence 0000 01245666777666 3443 245677889999999886 444322122 234788999999887 4
Q ss_pred CCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 307 VTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 307 ~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
++.. ......+ ++|++|++++|.-.. ++.....+++|+.|+++
T Consensus 290 l~~l--~~~~~~l-~~L~~L~Ls~N~l~~---i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 290 LVAL--NLYGQPI-PTLKVLDLSHNHLLH---VERNQPQFDRLENLYLD 332 (597)
T ss_dssp CCEE--ECSSSCC-TTCCEEECCSSCCCC---CGGGHHHHTTCSEEECC
T ss_pred CCCC--CcccccC-CCCcEEECCCCCCCc---cCcccccCCCCCEEECC
Confidence 5431 1111112 599999999886332 33333567899998875
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=2.3e-13 Score=129.42 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=7.7
Q ss_pred ccCCccEeecCCC
Q 018439 82 RYRHVREINLEFA 94 (356)
Q Consensus 82 ~~~~l~~l~l~~~ 94 (356)
.+++|++|+++++
T Consensus 489 ~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 489 NLKDLTDVELYNC 501 (876)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECcCC
Confidence 4556666666554
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=3.6e-13 Score=128.16 Aligned_cols=252 Identities=11% Similarity=0.047 Sum_probs=149.2
Q ss_pred cccCCccEeecCCCCCCch-HHHHHHHHH--hcccCCCccEEecCCCCCCCHHHHHH--HHHhCCCccEEEeecCCccCH
Q 018439 81 PRYRHVREINLEFAQDIED-RHLELLKTK--CLGSLQDLESLNLNGCQKISDKGIEI--ISSTCPELKVFSIYWNVRVTD 155 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~-~~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~ 155 (356)
..+++|+.|+++++..+.. .....+... .+..+++|+.|+++++ .+. .++. ....+++|+.|+++++ .++
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~- 586 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHN-KVR- 586 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTS-CCC-
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCC-Ccc-
Confidence 4567888999987753443 222222211 1345678999999886 344 2322 4467888999999887 455
Q ss_pred HHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC-CcEEecCCCCCCChHHHHHHHhcC--CCCcEEEcCCCCCCC
Q 018439 156 IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE-LESLNLTRCVKLTDGGLQKILIKC--SSLRSLNLYALSGFT 232 (356)
Q Consensus 156 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~ 232 (356)
.++ .+..+++|+.|+++++ .+.. ++.....+++ |+.|+++++ .++ .++..+... ++|+.|+++++. +.
T Consensus 587 -~lp-~~~~L~~L~~L~Ls~N-~l~~--lp~~l~~l~~~L~~L~Ls~N-~L~--~lp~~~~~~~~~~L~~L~Ls~N~-l~ 657 (876)
T 4ecn_A 587 -HLE-AFGTNVKLTDLKLDYN-QIEE--IPEDFCAFTDQVEGLGFSHN-KLK--YIPNIFNAKSVYVMGSVDFSYNK-IG 657 (876)
T ss_dssp -BCC-CCCTTSEESEEECCSS-CCSC--CCTTSCEECTTCCEEECCSS-CCC--SCCSCCCTTCSSCEEEEECCSSC-TT
T ss_pred -cch-hhcCCCcceEEECcCC-cccc--chHHHhhccccCCEEECcCC-CCC--cCchhhhccccCCCCEEECcCCc-CC
Confidence 222 3456788999998885 3431 3222344677 999999885 444 222222223 348899998853 32
Q ss_pred hHHH---HHhc--cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHh-------cCCCCCEEE
Q 018439 233 DEAY---KKIS--LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAE-------GCSSLEFLS 300 (356)
Q Consensus 233 ~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~L~~L~ 300 (356)
.... ..+. ..++|+.|+++++ .++......+..+++|++|++++| .++... ..+.. .+++|+.|+
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip-~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIP-ENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCC-TTSSSCTTSCCTTGGGCCEEE
T ss_pred CccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccC-hHHhccccccccccCCccEEE
Confidence 2100 0111 3458999999988 455433444557889999999886 443111 01111 123899999
Q ss_pred ecCCCCCCHHHHHHHH-HHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 301 LFGIVGVTDKCLEVLS-RFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 301 l~~~~~~~~~~~~~l~-~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+++| .++.. ...+. ... ++|+.|++++|. +.. ++.....+++|+.|+++
T Consensus 735 Ls~N-~L~~l-p~~l~~~~l-~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 735 LRFN-KLTSL-SDDFRATTL-PYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCSS-CCCCC-CGGGSTTTC-TTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECC
T ss_pred CCCC-CCccc-hHHhhhccC-CCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECC
Confidence 9987 55521 11111 122 589999999875 332 44444578999999874
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.26 E-value=3.1e-13 Score=124.18 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=30.4
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCch--HHHHHhhcCCCCcEEecCCC
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD--EGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~ 278 (356)
.+++|++|+++++ .+.+.....+..+++|++|+++++ .++. .....+..+++|++|++++|
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred CCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC
Confidence 3455566666553 233322333445566666666665 3332 22233455566666666654
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.26 E-value=5.2e-12 Score=115.02 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=68.9
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCCh-HHHHHHHhcCCCCcEEEcCCCCCCCh-HHHHHhcc
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISL 241 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 241 (356)
.+++|++|+++++ .+++... .....+++|+.|+++++ .++. ..++..+..+++|++|+++++. +.. .....+..
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCC
T ss_pred hCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhcc
Confidence 3455555555553 2322111 11123555666666553 3332 1233344555666666665532 221 11111334
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccc
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSN 321 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 321 (356)
+++|++|+++++ .++......+ .++|++|++++| .++. +......+++|+.|+++++ .++......+ ..+ +
T Consensus 398 l~~L~~L~Ls~N-~l~~~~~~~l--~~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l-~ 468 (520)
T 2z7x_B 398 TKSLLSLNMSSN-ILTDTIFRCL--PPRIKVLDLHSN-KIKS--IPKQVVKLEALQELNVASN-QLKSVPDGIF-DRL-T 468 (520)
T ss_dssp CTTCCEEECCSS-CCCGGGGGSC--CTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTC-T
T ss_pred CccCCEEECcCC-CCCcchhhhh--cccCCEEECCCC-cccc--cchhhhcCCCCCEEECCCC-cCCccCHHHh-ccC-C
Confidence 456666666665 3332211111 146666666654 3331 1111114666677777665 3432111101 112 3
Q ss_pred cccEEecCCCCC
Q 018439 322 TLTTLDVNGCVG 333 (356)
Q Consensus 322 ~L~~L~l~~c~~ 333 (356)
+|++|++++++-
T Consensus 469 ~L~~L~l~~N~~ 480 (520)
T 2z7x_B 469 SLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEECcCCCC
Confidence 677777766653
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.26 E-value=4.9e-13 Score=114.39 Aligned_cols=223 Identities=15% Similarity=0.116 Sum_probs=143.9
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.+.++.|+++++. ++.. ....+..+++|++|+++++ .+.... ......+++|++|+++++ .++... .
T Consensus 51 ~~~l~~L~L~~n~-i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~l~--~-- 117 (330)
T 1xku_A 51 PPDTALLDLQNNK-ITEI-----KDGDFKNLKNLHTLILINN-KISKIS-PGAFAPLVKLERLYLSKN-QLKELP--E-- 117 (330)
T ss_dssp CTTCCEEECCSSC-CCCB-----CTTTTTTCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSS-CCSBCC--S--
T ss_pred CCCCeEEECCCCc-CCEe-----ChhhhccCCCCCEEECCCC-cCCeeC-HHHhcCCCCCCEEECCCC-cCCccC--h--
Confidence 4678999998764 3221 1111456799999999986 343221 112356899999999987 444211 1
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChH-HHHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDG-GLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (356)
...++|++|+++++ .+... .......+++|+.|+++++ .+... .....+..+++|++|++.++. +... .. ..
T Consensus 118 ~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-~~--~~ 190 (330)
T 1xku_A 118 KMPKTLQELRVHEN-EITKV-RKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN-ITTI-PQ--GL 190 (330)
T ss_dssp SCCTTCCEEECCSS-CCCBB-CHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC-CCSC-CS--SC
T ss_pred hhcccccEEECCCC-ccccc-CHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc-cccC-Cc--cc
Confidence 12378999999985 44432 2233456899999999985 44321 122345678999999999853 3210 00 12
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccc
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSN 321 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 321 (356)
.++|++|+++++ .++......+..+++|++|++++| .++...... ...+++|++|+++++ .++. +......+ +
T Consensus 191 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~--lp~~l~~l-~ 263 (330)
T 1xku_A 191 PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNN-KLVK--VPGGLADH-K 263 (330)
T ss_dssp CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSS-CCSS--CCTTTTTC-S
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCC-cCcc--CChhhccC-C
Confidence 379999999998 566555566788999999999986 444322112 334899999999997 4542 11111223 4
Q ss_pred cccEEecCCCC
Q 018439 322 TLTTLDVNGCV 332 (356)
Q Consensus 322 ~L~~L~l~~c~ 332 (356)
+|++|++++|.
T Consensus 264 ~L~~L~l~~N~ 274 (330)
T 1xku_A 264 YIQVVYLHNNN 274 (330)
T ss_dssp SCCEEECCSSC
T ss_pred CcCEEECCCCc
Confidence 99999999875
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=1.2e-13 Score=124.29 Aligned_cols=214 Identities=15% Similarity=0.114 Sum_probs=145.9
Q ss_pred ccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHh
Q 018439 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (356)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 190 (356)
..+++|+.|+++++ .+..... .....+++|++|+++++ .++.... +..+++|++|+++++ .++.. ..
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------~~ 97 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQEL------LV 97 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSS-EEEEE------EE
T ss_pred ccCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCC-cCCCC------CC
Confidence 34468999999997 4443221 22367899999999988 4442211 457899999999985 44431 13
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhh-cCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIA-KCKN 269 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~ 269 (356)
.++|++|+++++ .++... ...+++|+.|+++++ .+.......+..+++|++|+++++ .++......+. .+++
T Consensus 98 ~~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 GPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDT 170 (487)
T ss_dssp CTTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTT
T ss_pred CCCcCEEECcCC-cCCCCC----ccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCc
Confidence 589999999995 554321 134789999999985 454443445567899999999999 56654445554 6899
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcc
Q 018439 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHL 349 (356)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L 349 (356)
|++|++++| .++.. ... ..+++|+.|+++++ .++..... +. .+ ++|+.|++++|.- +. ++.....+++|
T Consensus 171 L~~L~Ls~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~~~~-~~-~l-~~L~~L~Ls~N~l-~~--lp~~l~~l~~L 239 (487)
T 3oja_A 171 LEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPE-FQ-SA-AGVTWISLRNNKL-VL--IEKALRFSQNL 239 (487)
T ss_dssp CCEEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEECGG-GG-GG-TTCSEEECTTSCC-CE--ECTTCCCCTTC
T ss_pred ccEEecCCC-ccccc--ccc-ccCCCCCEEECCCC-CCCCCCHh-Hc-CC-CCccEEEecCCcC-cc--cchhhccCCCC
Confidence 999999986 44432 111 13789999999997 56542111 22 22 5999999999863 31 33334567889
Q ss_pred eEeeec
Q 018439 350 MCFKVH 355 (356)
Q Consensus 350 ~~l~l~ 355 (356)
+.|++.
T Consensus 240 ~~L~l~ 245 (487)
T 3oja_A 240 EHFDLR 245 (487)
T ss_dssp CEEECT
T ss_pred CEEEcC
Confidence 998875
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.26 E-value=1.8e-14 Score=123.44 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=108.3
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHH-HHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (356)
++|++|+++++ .++... ...+..+++|++|++.++ .++.... ......+ +|+.|+++++ .++. ++. ...+
T Consensus 123 ~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~--l~~--~~~~ 193 (332)
T 2ft3_A 123 SSLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEA-KLTG--IPK--DLPE 193 (332)
T ss_dssp TTCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSS-BCSS--CCS--SSCS
T ss_pred ccCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCC-CCCc--cCc--cccC
Confidence 45666666555 332111 011234566666666653 2221000 0111112 5666666553 2321 110 1125
Q ss_pred CCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 018439 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (356)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (356)
+|++|+++++ .+.......+..+++|++|+++++ .+.......+..+++|++|++++| .++. +......+++|+.
T Consensus 194 ~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 194 TLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQV 268 (332)
T ss_dssp SCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCE
T ss_pred CCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCee--cChhhhcCccCCE
Confidence 7888888774 333333334567889999999988 455444445777899999999986 4442 1112345889999
Q ss_pred EEecCCCCCCHHHHHHHHHH----ccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 299 LSLFGIVGVTDKCLEVLSRF----CSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 299 L~l~~~~~~~~~~~~~l~~~----~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
|+++++ .++......+... ..++|+.|++.+++.......+.....+++|+.+++.
T Consensus 269 L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 269 VYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp EECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred EECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 999986 4554332222111 0247899999988743222223334457778877764
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=2.8e-12 Score=114.38 Aligned_cols=223 Identities=18% Similarity=0.165 Sum_probs=158.4
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..++++++|+++++. +.+. .. +..+++|++|+++++ .+.... ...+++|++|+++++ .++...
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~-----l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~--- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TG-----IEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD--- 101 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TT-----GGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC---
T ss_pred hHcCCCCEEEccCCC-cccC--hh-----hcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee---
Confidence 456899999999874 3331 11 456799999999997 444332 467899999999998 555532
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (356)
+..+++|++|+++++ .++.. . ...+++|++|+++++ .++... +..+++|+.|++.++..+... .+.
T Consensus 102 -~~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~ 167 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL---DVT 167 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC---CCT
T ss_pred -cCCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc---ccc
Confidence 457899999999985 45442 2 346899999999985 555421 567899999999987544432 356
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
.+++|++|+++++ .++.. .+..+++|++|++++| .++... ...+++|+.|+++++ .+++. . ...+
T Consensus 168 ~l~~L~~L~ls~n-~l~~l---~l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N-~l~~i--p--~~~l- 232 (457)
T 3bz5_A 168 PQTQLTTLDCSFN-KITEL---DVSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSN-KLTEI--D--VTPL- 232 (457)
T ss_dssp TCTTCCEEECCSS-CCCCC---CCTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC--C--CTTC-
T ss_pred cCCcCCEEECCCC-cccee---ccccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCC-ccccc--C--cccc-
Confidence 7899999999998 55542 2778899999999986 444431 345899999999997 56552 1 2233
Q ss_pred ccccEEecCCCCCccHHHHHHHHhhCCcceEeee
Q 018439 321 NTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKV 354 (356)
Q Consensus 321 ~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l 354 (356)
++|++|+++++. ++.. + ...+++|+.|.+
T Consensus 233 ~~L~~L~l~~N~-l~~~--~--~~~l~~L~~L~l 261 (457)
T 3bz5_A 233 TQLTYFDCSVNP-LTEL--D--VSTLSKLTTLHC 261 (457)
T ss_dssp TTCSEEECCSSC-CSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEeeCCc-CCCc--C--HHHCCCCCEEec
Confidence 499999999885 3321 1 345777777654
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=3.6e-14 Score=130.82 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=88.7
Q ss_pred hCCCccEEEeecCCccCHHH-HHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhc
Q 018439 138 TCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (356)
.+++|++|+++++ .++... ....+..+++|++|+++++. +.... .. ...+++|++|+++++ .+........+..
T Consensus 345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS-SN-FLGLEQLEHLDFQHS-NLKQMSEFSVFLS 419 (570)
T ss_dssp BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEE-EE-EETCTTCCEEECTTS-EEESCTTSCTTTT
T ss_pred cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-ccccc-cc-ccccCCCCEEEccCC-ccccccchhhhhc
Confidence 4556666666555 332111 01112345666666666542 21100 00 223566666666663 2221111112345
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCch-HHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD-EGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (356)
+++|++|++.++ .+.......+..+++|++|++++| .+.+ .....+..+++|++|++++| .+++..... ...+++
T Consensus 420 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~ 495 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSS 495 (570)
T ss_dssp CTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTT
T ss_pred CCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhh-hhcccC
Confidence 677777777664 222222233455677777777777 3332 12233455677777777765 333321111 223677
Q ss_pred CCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 296 LEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 296 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
|+.|++++| .+++.....+ ..+ ++|++|++++++
T Consensus 496 L~~L~l~~n-~l~~~~~~~~-~~l-~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASN-QLKSVPDGIF-DRL-TSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSS-CCSCCCTTTT-TTC-TTCCEEECCSSC
T ss_pred CCEEeCCCC-cCCCCCHHHh-hcc-cCCcEEEecCCc
Confidence 777777776 3443211111 122 377777777654
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=4.7e-13 Score=113.42 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=135.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHH--hCCCccEEEeecCCccCHHHHHHHH-HhCCcCcEEeccCCCCCCH----HHHHH
Q 018439 114 QDLESLNLNGCQKISDKGIEIISS--TCPELKVFSIYWNVRVTDIGIQHLV-KNCKHIIDLNLSGCKNLLD----KSLQL 186 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~----~~~~~ 186 (356)
..++.+.+.++ .+++..+..+.. .+++|++|+++++ .++......++ ..+++|++|+++++ .++. .....
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 46788888876 566655544332 3477999999887 44332222211 46788999999885 3432 11122
Q ss_pred HHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHH---hccCCCCCEEecCCCCCCch--HHH
Q 018439 187 IADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK---ISLLAHLKFLDLCGAQNLSD--EGL 261 (356)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~--~~~ 261 (356)
+. .+++|++|+++++ .+... ....+..+++|++|+++++.......... +..+++|++|++++| .++. ...
T Consensus 141 ~~-~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 216 (310)
T 4glp_A 141 QW-LKPGLKVLSIAQA-HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVC 216 (310)
T ss_dssp TT-BCSCCCEEEEECC-SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHH
T ss_pred hh-hccCCCEEEeeCC-Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHH
Confidence 22 5889999999885 44321 11234568899999998854332222221 246789999999998 4542 212
Q ss_pred H-HhhcCCCCcEEecCCCCCCCHHHHHHHHh--cCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHH
Q 018439 262 A-CIAKCKNLVSLNLTWCVRITDVGVMAIAE--GCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRS 338 (356)
Q Consensus 262 ~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~ 338 (356)
. .+..+++|++|++++| .+++.....+.. .+++|++|+++++ .++. +....+++|++|++++|. ++.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-----lp~~~~~~L~~L~Ls~N~-l~~-- 286 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-----VPKGLPAKLRVLDLSSNR-LNR-- 286 (310)
T ss_dssp HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-----CCSCCCSCCSCEECCSCC-CCS--
T ss_pred HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCc-----hhhhhcCCCCEEECCCCc-CCC--
Confidence 2 3467889999999986 444321111111 1368999999887 4552 111122589999999875 332
Q ss_pred HHHHHhhCCcceEeeec
Q 018439 339 RDELLQLFPHLMCFKVH 355 (356)
Q Consensus 339 ~~~~~~~~p~L~~l~l~ 355 (356)
++. ...+|+|+.|+++
T Consensus 287 ~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLD 302 (310)
T ss_dssp CCC-TTSCCCCSCEECS
T ss_pred Cch-hhhCCCccEEECc
Confidence 122 3567888888875
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=2.1e-13 Score=115.73 Aligned_cols=203 Identities=19% Similarity=0.213 Sum_probs=112.9
Q ss_pred cCCCccEEecCCCCCCCHHHHHHH-HHhCCCccEEEeecCCccCHH--HHHHHHH-hCCcCcEEeccCCCCCCHHHHHHH
Q 018439 112 SLQDLESLNLNGCQKISDKGIEII-SSTCPELKVFSIYWNVRVTDI--GIQHLVK-NCKHIIDLNLSGCKNLLDKSLQLI 187 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~ 187 (356)
.+++|++|+++++. +.......+ ...+++|++|+++++ .++.. .+..+.. .+++|++|+++++ .+..... ..
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQ 168 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TT
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HH
Confidence 45788888887753 221111111 245778888888877 44432 1222110 1278888888874 3332111 11
Q ss_pred HHhCCCCcEEecCCCCCCCh-HHHHHHH--hcCCCCcEEEcCCCCCCCh--HHH-HHhccCCCCCEEecCCCCCCchHH-
Q 018439 188 ADNYQELESLNLTRCVKLTD-GGLQKIL--IKCSSLRSLNLYALSGFTD--EAY-KKISLLAHLKFLDLCGAQNLSDEG- 260 (356)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~- 260 (356)
...+++|++|+++++ .+.. ..+.... ..+++|++|+++++ .+.. ... ..+..+++|++|+++++ .++...
T Consensus 169 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 245 (312)
T 1wwl_A 169 VRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAG 245 (312)
T ss_dssp CCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC
T ss_pred hccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccc
Confidence 234778888888874 3332 2222222 56788888888875 3431 122 22346778888888887 444322
Q ss_pred HHHhhcCCCCcEEecCCCCCCCHHHHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 261 LACIAKCKNLVSLNLTWCVRITDVGVMAIAEG-CSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 261 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
...+..+++|++|++++| .++. +... .++|+.|+++++ .+++. ..+ ... ++|++|++++++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~-----ip~~~~~~L~~L~Ls~N-~l~~~--p~~-~~l-~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQ-----VPKGLPAKLSVLDLSYN-RLDRN--PSP-DEL-PQVGNLSLKGNP 307 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSS-----CCSSCCSEEEEEECCSS-CCCSC--CCT-TTS-CEEEEEECTTCT
T ss_pred hhhhhhcCCCCEEECCCC-ccCh-----hhhhccCCceEEECCCC-CCCCC--hhH-hhC-CCCCEEeccCCC
Confidence 223344678888888875 3441 1111 157888888876 45532 111 222 488888888765
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=4.3e-12 Score=99.94 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=70.8
Q ss_pred hCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (356)
.+++|++|+++++ .++... . +..+++|++|+++++ .+++ +.. ...+++|++|+++++ .++..... .+..+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~l~~n-~~~~--~~~-l~~l~~L~~L~l~~n-~l~~~~~~-~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT--G-IEYAHNIKDLTINNI-HATN--YNP-ISGLSNLERLRIMGK-DVTSDKIP-NLSGL 111 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT--T-GGGCTTCSEEEEESC-CCSC--CGG-GTTCTTCCEEEEECT-TCBGGGSC-CCTTC
T ss_pred hcCCccEEeccCC-CccChH--H-HhcCCCCCEEEccCC-CCCc--chh-hhcCCCCCEEEeECC-ccCcccCh-hhcCC
Confidence 3467777777766 444211 1 345667777777765 3332 111 223566666666653 33321111 13345
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
++|++|+++++ .+.+.....+..+++|++|++++|..+++. ..+..+++|++|++++| .+++.. ....+++|+
T Consensus 112 ~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~ 184 (197)
T 4ezg_A 112 TSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLN 184 (197)
T ss_dssp TTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCC
T ss_pred CCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCC-CCcChH---HhccCCCCC
Confidence 55555555552 333333444455555555555555323322 13444555555555543 232211 122345555
Q ss_pred EEEecCC
Q 018439 298 FLSLFGI 304 (356)
Q Consensus 298 ~L~l~~~ 304 (356)
.|++.++
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 5555543
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.23 E-value=1.2e-13 Score=128.47 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=101.5
Q ss_pred cccCCCccEEecCCCCCCCHH----------------HHHHHHH--hCCCccEEEeecCCccCHHHHHHHHHhCCcCcEE
Q 018439 110 LGSLQDLESLNLNGCQKISDK----------------GIEIISS--TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDL 171 (356)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 171 (356)
++.+++|++|+++++. ++.. .++.... .+++|++|+++++ .+... ++..+.++++|++|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTK-LPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSS-CCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCcc-ChHHHhcCCCCCEE
Confidence 5567899999999874 5541 0232334 7899999999988 33321 12224578899999
Q ss_pred eccCCCCCCHHHHHHHHHh------CCCCcEEecCCCCCCChHHHHH--HHhcCCCCcEEEcCCCCCCChHHHHHhccCC
Q 018439 172 NLSGCKNLLDKSLQLIADN------YQELESLNLTRCVKLTDGGLQK--ILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (356)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (356)
+++++..++...++..... +++|++|+++++ .++ .++. .+..+++|++|+++++ .+..... .+..++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEI 353 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCC
Confidence 9998643665234333333 389999999985 554 2444 5778899999999885 3331222 455667
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCC-CcEEecCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKN-LVSLNLTWC 278 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 278 (356)
+|++|+++++ .++ .....+..+++ |++|++++|
T Consensus 354 ~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 354 KLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSS
T ss_pred CCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCC
Confidence 7888888777 343 11223455666 777777765
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=1.9e-13 Score=128.56 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=18.2
Q ss_pred hcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCC
Q 018439 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGA 253 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 253 (356)
..+++|+.|+++++ .+.......+..+++|++|+++++
T Consensus 477 ~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 477 QPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCC
Confidence 34556666666553 222211222344555666666555
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=7.9e-12 Score=98.43 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=48.3
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCC
Q 018439 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (356)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (356)
.+++|++|+++++ .++.. . .+..+++|++|++.++ .+.+.....+..+++|++|+++++ .+++.....++.+++
T Consensus 64 ~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 64 YAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPK 137 (197)
T ss_dssp GCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSS
T ss_pred cCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCC
Confidence 3555555555553 22221 1 2334555555555552 333322333444555555555555 344444444555555
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
|++|++++|..+++.. ....+++|+.|++++|
T Consensus 138 L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB
T ss_pred CCEEEccCCCCccccH---hhcCCCCCCEEECCCC
Confidence 5555555543233321 1223555555555554
No 75
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.21 E-value=5.9e-14 Score=119.07 Aligned_cols=206 Identities=16% Similarity=0.123 Sum_probs=95.3
Q ss_pred ccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHh
Q 018439 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (356)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 190 (356)
..+++|++|+++++..+... ++.....+++|++|+++++ .++... ...+..+++|++|+++++ .+... +......
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n-~l~~~~-p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~ 147 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHT-NVSGAI-PDFLSQIKTLVTLDFSYN-ALSGT-LPPSISS 147 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEE-CCEEEC-CGGGGGCTTCCEEECCSS-EEESC-CCGGGGG
T ss_pred hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCC-eeCCcC-CHHHhCCCCCCEEeCCCC-ccCCc-CChHHhc
Confidence 44566777776631121111 1111245667777777665 332111 111245667777777664 22210 1112234
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCC-CCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCS-SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (356)
+++|++|+++++ .++. .++..+..++ +|+.|+++++ .+.......+..++ |++|+++++ .++......+..+++
T Consensus 148 l~~L~~L~L~~N-~l~~-~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 148 LPNLVGITFDGN-RISG-AIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKN 222 (313)
T ss_dssp CTTCCEEECCSS-CCEE-ECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSC
T ss_pred CCCCCeEECcCC-cccC-cCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCC
Confidence 667777777663 3321 1112233444 6677777663 22222222333443 677777666 343333344555666
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
|++|++++|. ++... .. ...+++|++|+++++ .+++.....+. .. ++|++|++++|.
T Consensus 223 L~~L~L~~N~-l~~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~-~l-~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 223 TQKIHLAKNS-LAFDL-GK-VGLSKNLNGLDLRNN-RIYGTLPQGLT-QL-KFLHSLNVSFNN 279 (313)
T ss_dssp CSEEECCSSE-ECCBG-GG-CCCCTTCCEEECCSS-CCEECCCGGGG-GC-TTCCEEECCSSE
T ss_pred CCEEECCCCc-eeeec-Cc-ccccCCCCEEECcCC-cccCcCChHHh-cC-cCCCEEECcCCc
Confidence 7777766643 22110 01 223566777777665 33321111111 12 366677766654
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.21 E-value=4.2e-14 Score=119.96 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=143.1
Q ss_pred CCccEEecCCCCCCCH-HHHHHHHHhCCCccEEEeec-CCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhC
Q 018439 114 QDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYW-NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 191 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (356)
.+++.|+++++ .+.. ..+......+++|++|++++ + .+.... ...+..+++|++|+++++ .++.. +......+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~-p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPI-PPAIAKLTQLHYLYITHT-NVSGA-IPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEET-TEESCC-CGGGGGCTTCSEEEEEEE-CCEEE-CCGGGGGC
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCC-cccccC-ChhHhcCCCCCEEECcCC-eeCCc-CCHHHhCC
Confidence 46777777775 2331 01122346789999999995 4 333221 122457899999999985 34321 22223468
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCC-CCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA-HLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
++|++|+++++ .++. .++..+..+++|++|++.++ .+.......+..++ +|++|+++++ .++......+..++ |
T Consensus 125 ~~L~~L~Ls~N-~l~~-~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 125 KTLVTLDFSYN-ALSG-TLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-L 199 (313)
T ss_dssp TTCCEEECCSS-EEES-CCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-C
T ss_pred CCCCEEeCCCC-ccCC-cCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-c
Confidence 99999999985 3331 12234567999999999985 44433344566777 9999999998 45544444566666 9
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcce
Q 018439 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLM 350 (356)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~ 350 (356)
++|++++|. ++... ......+++|+.|+++++ .++...-. + .. .++|++|++++|.- ... ++.....+++|+
T Consensus 200 ~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~-~-~~-l~~L~~L~Ls~N~l-~~~-~p~~l~~l~~L~ 271 (313)
T 1ogq_A 200 AFVDLSRNM-LEGDA-SVLFGSDKNTQKIHLAKN-SLAFDLGK-V-GL-SKNLNGLDLRNNRI-YGT-LPQGLTQLKFLH 271 (313)
T ss_dssp SEEECCSSE-EEECC-GGGCCTTSCCSEEECCSS-EECCBGGG-C-CC-CTTCCEEECCSSCC-EEC-CCGGGGGCTTCC
T ss_pred cEEECcCCc-ccCcC-CHHHhcCCCCCEEECCCC-ceeeecCc-c-cc-cCCCCEEECcCCcc-cCc-CChHHhcCcCCC
Confidence 999999863 33221 122345789999999987 34321111 1 12 25999999999863 211 344456789999
Q ss_pred Eeeec
Q 018439 351 CFKVH 355 (356)
Q Consensus 351 ~l~l~ 355 (356)
.|+++
T Consensus 272 ~L~Ls 276 (313)
T 1ogq_A 272 SLNVS 276 (313)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99875
No 77
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=1.9e-10 Score=98.73 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=93.4
Q ss_pred HHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHh-cCCCCcEEEcCCCCC--CCh---
Q 018439 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-KCSSLRSLNLYALSG--FTD--- 233 (356)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~--~~~--- 233 (356)
.++..+|+|++|.+.++..+.. .. . ..++|++|++..+ .++...+..+.. .+|+|++|++..+.. ..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 3344455555555554321111 11 0 2456666666553 455555544432 466666666532100 000
Q ss_pred HHHH-Hh--ccCCCCCEEecCCCCCCchHHHHHhh---cCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEecCC
Q 018439 234 EAYK-KI--SLLAHLKFLDLCGAQNLSDEGLACIA---KCKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSLFGI 304 (356)
Q Consensus 234 ~~~~-~l--~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~ 304 (356)
..+. .+ ..+|+|++|++.+| .+.+.+...++ .+++|++|+++. +.+++.+...+.. .+++|+.|++++|
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0011 11 24688888888887 56655555554 367899999976 4788877766653 3688999999887
Q ss_pred CCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 305 VGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
.+++.++..+.+.. ...++++...
T Consensus 318 -~i~d~~~~~l~~al---g~~~~~~~~~ 341 (362)
T 2ra8_A 318 -YLSDEMKKELQKSL---PMKIDVSDSQ 341 (362)
T ss_dssp -BCCHHHHHHHHHHC---CSEEECCSBC
T ss_pred -cCCHHHHHHHHHHc---CCEEEecCCc
Confidence 68988888887532 2556776543
No 78
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=8e-10 Score=94.84 Aligned_cols=219 Identities=15% Similarity=0.144 Sum_probs=141.9
Q ss_pred HHHhhcCcccCCccEeecCCCCCCc----hHHHHHHHHHhcccCCCccEEecCCCCC-------CCHHHHHHHHHhCCCc
Q 018439 74 LVAALSIPRYRHVREINLEFAQDIE----DRHLELLKTKCLGSLQDLESLNLNGCQK-------ISDKGIEIISSTCPEL 142 (356)
Q Consensus 74 ~~~~l~~~~~~~l~~l~l~~~~~~~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L 142 (356)
+...+.......++.|.+..+. .. ...+..+... ...+++|+.|.+..... +....+..+...+|+|
T Consensus 97 ~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s-~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L 174 (362)
T 2ra8_A 97 MDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVEN-KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLL 174 (362)
T ss_dssp HHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTT-HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTC
T ss_pred HHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHh-hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCC
Confidence 3333433444566777776443 22 1234444322 23568999998865321 1111345666789999
Q ss_pred cEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHH-hCCCCcEEecCCCCC-----CChHHHHHHH--
Q 018439 143 KVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD-NYQELESLNLTRCVK-----LTDGGLQKIL-- 214 (356)
Q Consensus 143 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~-----~~~~~~~~~~-- 214 (356)
++|.+.++....- ..+ ..++|++|++..+ .++...+..+.. .+|+|++|+++.+.. .....+..++
T Consensus 175 ~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 175 NNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred cEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 9999987632221 111 3689999999875 578878877764 589999999853111 0111122222
Q ss_pred hcCCCCcEEEcCCCCCCChHHHHHhc---cCCCCCEEecCCCCCCchHHHHHhh----cCCCCcEEecCCCCCCCHHHHH
Q 018439 215 IKCSSLRSLNLYALSGFTDEAYKKIS---LLAHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVM 287 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~ 287 (356)
..+|+|++|.+.+| .+.+.....+. .+++|++|+|+.+ .+++.+...+. .+++|+.|++++| .+++.++.
T Consensus 249 ~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~ 325 (362)
T 2ra8_A 249 DRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKK 325 (362)
T ss_dssp TTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHH
T ss_pred CCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHH
Confidence 25799999999885 44444444443 5789999999987 78888766654 3699999999986 79999988
Q ss_pred HHHhcCCCCCEEEecCCC
Q 018439 288 AIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 288 ~l~~~~~~L~~L~l~~~~ 305 (356)
.+...+ ..+++++...
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 887644 4668887653
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=4.4e-11 Score=100.15 Aligned_cols=100 Identities=31% Similarity=0.329 Sum_probs=44.1
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+++|++|+++++ .++.. ..+..+++|+.|+++++ .+... ..+..+++|++|+++++ .+++.. .+..+++|
T Consensus 111 l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L 180 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIV--PLAGLTKL 180 (291)
T ss_dssp CTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCG--GGTTCTTC
T ss_pred CCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCC-ccccch--hhcCCCcc
Confidence 455555555543 23221 11334555555555553 22211 23445555555555555 233221 14455555
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
++|++++| .+++. .. ...+++|+.|+++++
T Consensus 181 ~~L~L~~N-~i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 181 QNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCSS-CCCBC--GG-GTTCTTCSEEEEEEE
T ss_pred CEEECCCC-cCCCC--hh-hccCCCCCEEECcCC
Confidence 55555553 33321 11 223555555555554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=6.7e-12 Score=104.18 Aligned_cols=175 Identities=20% Similarity=0.207 Sum_probs=79.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|+.|+++++. +... .. ...+++|++|+++++ .++.. . .+..+++|++|+++++ .++.. .......+++
T Consensus 41 ~~L~~L~l~~~~-i~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~ 110 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSV--QG-IQYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTGN-QLQSL-PNGVFDKLTN 110 (272)
T ss_dssp TTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTTS-CCCCC-CTTTTTTCTT
T ss_pred cceeeeeeCCCC-cccc--cc-cccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCCC-ccCcc-ChhHhcCCcC
Confidence 455555555542 2211 11 234556666666555 33321 1 1234556666666553 22211 0111223556
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|++|+++++ .++.. ....+..+++|++|++.++ .+.......+..+++|++|+++++ .++......+..+++|++|
T Consensus 111 L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 111 LKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 666666653 33210 1112344566666666653 222221222345566666666666 3443322334556666666
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
++++| .++... ......+++|+.|++.++
T Consensus 187 ~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 187 RLYQN-QLKSVP-DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred ECCCC-cCCccC-HHHHhCCcCCCEEEccCC
Confidence 66654 232211 111233566666666665
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.15 E-value=2.8e-12 Score=120.65 Aligned_cols=209 Identities=17% Similarity=0.100 Sum_probs=120.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCH-HHHHHHHHh
Q 018439 112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADN 190 (356)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 190 (356)
.+++|+.|+++++. +...........+++|+.|+++++. +...... .+..+++|+.|++.++. +.. .........
T Consensus 403 ~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 403 WLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN-SFALVPSLQRLMLRRVA-LKNVDSSPSPFQP 478 (680)
T ss_dssp TCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCTT-TTTTCTTCCEEECTTSC-CBCTTCSSCTTTT
T ss_pred CCCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeChh-hhhcCcccccchhcccc-ccccccCCccccc
Confidence 44566666665542 2110000112345666666666552 2211101 12346677777776642 211 111122345
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHH--------HHHhccCCCCCEEecCCCCCCchHHHH
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEA--------YKKISLLAHLKFLDLCGAQNLSDEGLA 262 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~ 262 (356)
+++|+.|+++++ .++.. ....+.++++|+.|+++++ .+.... ...+..+++|++|+++++ .++.....
T Consensus 479 l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~ 554 (680)
T 1ziw_A 479 LRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE 554 (680)
T ss_dssp CTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 789999999885 44421 1123567899999999985 332211 012457889999999998 55543334
Q ss_pred HhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 263 CIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 263 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
.+..+++|++|+++++ .++... ...+..+++|+.|+++++ .++......+...+ ++|++|++++++
T Consensus 555 ~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~-~~L~~l~l~~N~ 620 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLN-NLNTLP-ASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAF-RNLTELDMRFNP 620 (680)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHH-TTCSEEECTTCC
T ss_pred HcccccCcceeECCCC-CCCcCC-HhHhCCCCCCCEEECCCC-cCCccChhHhcccc-cccCEEEccCCC
Confidence 5678899999999885 454321 122345789999999997 56543333232122 499999998765
No 82
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.13 E-value=5.1e-11 Score=71.45 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEec
Q 018439 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (356)
Q Consensus 20 ~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~ 63 (356)
.+|+|++.+||+||+.+|+.++++|||+|+.++ .++.+|+.+|
T Consensus 11 ~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~-~~~~lW~~ld 53 (53)
T 1fs1_A 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA-SDESLWQTLD 53 (53)
T ss_dssp SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH-TCGGGC----
T ss_pred HCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CChHHHHhcC
Confidence 445589999999999999999999999999985 6899999874
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=3.8e-12 Score=105.67 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=121.2
Q ss_pred hCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (356)
.+++|+.|.+.++ .++.. .. +..+++|++|+++++ .++. +.. ...+++|++|+++++ .++.. ....+..+
T Consensus 39 ~l~~L~~L~l~~~-~i~~~--~~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSV--QG-IQYLPNVRYLALGGN-KLHD--ISA-LKELTNLTYLILTGN-QLQSL-PNGVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECTTS-CCCC--CGG-GTTCTTCCEEECTTS-CCCCC-CTTTTTTC
T ss_pred cccceeeeeeCCC-Ccccc--cc-cccCCCCcEEECCCC-CCCC--chh-hcCCCCCCEEECCCC-ccCcc-ChhHhcCC
Confidence 4689999999987 44432 12 357899999999985 4544 222 345899999999985 44421 12235678
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
++|++|++.++ .+.......+..+++|++|+++++ .++......+..+++|++|++++| .+++.. ......+++|+
T Consensus 109 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~ 184 (272)
T 3rfs_A 109 TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLP-EGVFDKLTQLK 184 (272)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCC
T ss_pred cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccC-HHHhcCCccCC
Confidence 99999999985 344332333567899999999998 565444444678899999999986 444322 12234589999
Q ss_pred EEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 298 FLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 298 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
.|+++++ .++......+ ..+ ++|++|++++++
T Consensus 185 ~L~L~~N-~l~~~~~~~~-~~l-~~L~~L~l~~N~ 216 (272)
T 3rfs_A 185 DLRLYQN-QLKSVPDGVF-DRL-TSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSS-CCSCCCTTTT-TTC-TTCCEEECCSSC
T ss_pred EEECCCC-cCCccCHHHH-hCC-cCCCEEEccCCC
Confidence 9999987 4553221111 223 499999999875
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.12 E-value=8.3e-13 Score=126.97 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=40.7
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHH-HHHHhCCCccEEEeecCCccCHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE-IISSTCPELKVFSIYWNVRVTDIGIQ 159 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (356)
..+++|++|+++++. +... ....+..+++|++|+++++. +...... .....+++|++|+++++ .++.....
T Consensus 70 ~~L~~L~~L~Ls~N~-l~~~-----~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~ 141 (844)
T 3j0a_A 70 RNLPNLRILDLGSSK-IYFL-----HPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH 141 (844)
T ss_dssp SSCTTCCEEECTTCC-CCEE-----CTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCC
T ss_pred cCCCCCCEEECCCCc-Cccc-----CHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCC-cccccccc
Confidence 345566666666543 1110 01113445666666666652 2211110 11234566666666665 33322221
Q ss_pred HHHHhCCcCcEEeccCC
Q 018439 160 HLVKNCKHIIDLNLSGC 176 (356)
Q Consensus 160 ~l~~~~~~L~~L~l~~~ 176 (356)
..+.++++|++|+++++
T Consensus 142 ~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGGTCSSCCEEEEESS
T ss_pred hhHhhCCCCCEEECCCC
Confidence 22345666666666653
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.11 E-value=7.3e-11 Score=98.85 Aligned_cols=167 Identities=23% Similarity=0.264 Sum_probs=111.7
Q ss_pred CCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 018439 139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS 218 (356)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (356)
+++|+.|+++++ .++.. .. +..+++|++|+++++ .+++ +.. ...+++|+.|+++++ .++. +.. +..++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n-~l~~--~~~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGN-KLTD--IKP-LANLKNLGWLFLDEN-KVKD--LSS-LKDLK 112 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSS-CCCC--GGG-GTTCT
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCC-ccCC--Ccc-cccCCCCCEEECCCC-cCCC--Chh-hccCC
Confidence 456666666665 33322 11 345677777777764 3333 111 345788888888874 4543 222 56789
Q ss_pred CCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 018439 219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298 (356)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 298 (356)
+|++|+++++ .+.+ ...+..+++|++|+++++ .++.. ..+..+++|++|++++| .+++... ...+++|+.
T Consensus 113 ~L~~L~L~~n-~i~~--~~~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 113 KLKSLSLEHN-GISD--INGLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQN 182 (291)
T ss_dssp TCCEEECTTS-CCCC--CGGGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCE
T ss_pred CCCEEECCCC-cCCC--ChhhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCC-ccccchh---hcCCCccCE
Confidence 9999999985 3433 245778899999999998 45543 56788999999999986 4554322 455899999
Q ss_pred EEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 299 LSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 299 L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
|+++++ .+++. ..+ ..+ ++|+.|++++++
T Consensus 183 L~L~~N-~i~~l--~~l-~~l-~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKN-HISDL--RAL-AGL-KNLDVLELFSQE 211 (291)
T ss_dssp EECCSS-CCCBC--GGG-TTC-TTCSEEEEEEEE
T ss_pred EECCCC-cCCCC--hhh-ccC-CCCCEEECcCCc
Confidence 999997 56542 222 223 499999998864
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.11 E-value=3.7e-13 Score=124.00 Aligned_cols=245 Identities=16% Similarity=0.112 Sum_probs=148.8
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
+++++++++.++. +.. +.. ....+ +|++|+++++. +.. +.. ..+++|++|++.++........
T Consensus 281 l~~L~~L~l~~~~-l~~-----l~~-~~~~~-~L~~L~l~~n~-~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~---- 343 (570)
T 2z63_A 281 LTNVSSFSLVSVT-IER-----VKD-FSYNF-GWQHLELVNCK-FGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE---- 343 (570)
T ss_dssp GTTCSEEEEESCE-ECS-----CCB-CCSCC-CCSEEEEESCB-CSS--CCB--CBCSSCCEEEEESCBSCCBCCC----
T ss_pred cCcccEEEecCcc-chh-----hhh-hhccC-CccEEeeccCc-ccc--cCc--ccccccCEEeCcCCcccccccc----
Confidence 4667777776553 111 100 13344 89999998874 331 111 3678999999988742221111
Q ss_pred HhCCcCcEEeccCCCCCCHHH-HHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc
Q 018439 163 KNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (356)
..+++|++|+++++ .++... .......+++|++|+++++ .+... ...+..+++|++|++.++..........+..
T Consensus 344 ~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 344 VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEE--EEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-ccccc--cccccccCCCCEEEccCCccccccchhhhhc
Confidence 46789999999885 343211 1122345899999999885 33321 1114568899999998853211111123557
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccc
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSN 321 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 321 (356)
+++|++|+++++ .+.......+..+++|++|++++|. +++..+......+++|+.|++++| .+++.....+. .+ +
T Consensus 420 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l-~ 494 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN-SL-S 494 (570)
T ss_dssp CTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT-TC-T
T ss_pred CCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhhh-cc-c
Confidence 889999999998 4544444556778999999999863 332112223345789999999987 45543222222 23 4
Q ss_pred cccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 322 TLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 322 ~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+|++|++++|. ++.. .+.....+++|+.|+++
T Consensus 495 ~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 495 SLQVLNMASNQ-LKSV-PDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp TCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECC
T ss_pred CCCEEeCCCCc-CCCC-CHHHhhcccCCcEEEec
Confidence 89999999885 3321 22334568889988875
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.10 E-value=1.1e-13 Score=133.17 Aligned_cols=276 Identities=15% Similarity=0.118 Sum_probs=152.5
Q ss_pred CCcceEeccccccchhhhHHHhhcCcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHH
Q 018439 56 PSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135 (356)
Q Consensus 56 ~~l~~~l~l~~~~~~~~~~~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 135 (356)
|.-.+.++++....... ..-.+..+++|++|+++++..... +....+..+++|+.|+++++. +.... +..
T Consensus 23 p~~l~~LdLs~N~i~~i---~~~~~~~l~~L~~LdLs~n~~~~~-----i~~~~f~~L~~L~~L~Ls~N~-l~~~~-p~~ 92 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV---TASSFPFLEQLQLLELGSQYTPLT-----IDKEAFRNLPNLRILDLGSSK-IYFLH-PDA 92 (844)
T ss_dssp CTTCCEEEEESCCCCEE---CSSSCSSCCSCSEEEECTTCCCCE-----ECTTTTSSCTTCCEEECTTCC-CCEEC-TTS
T ss_pred CCCcCEEECCCCcCCcc---ChhHCcccccCeEEeCCCCCCccc-----cCHHHhcCCCCCCEEECCCCc-CcccC-HhH
Confidence 34456677765432210 012235678888999887632211 101114567889999998863 33221 122
Q ss_pred HHhCCCccEEEeecCCccCHHHHH-HHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCC---hHHHH
Q 018439 136 SSTCPELKVFSIYWNVRVTDIGIQ-HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLT---DGGLQ 211 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~ 211 (356)
...+++|++|+++++ .+++.... ..+..+++|++|+++++ .+...........+++|++|+++++ .++ ...+.
T Consensus 93 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~ 169 (844)
T 3j0a_A 93 FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELE 169 (844)
T ss_dssp SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGH
T ss_pred ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcc
Confidence 356788999999887 55432111 11346788999999885 3333212222346889999998874 332 23333
Q ss_pred HHHhcCCCCcEEEcCCCCCCChHHHHHhccCC------CCCEEecCCCCCCchHHHHHh---------------------
Q 018439 212 KILIKCSSLRSLNLYALSGFTDEAYKKISLLA------HLKFLDLCGAQNLSDEGLACI--------------------- 264 (356)
Q Consensus 212 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~l--------------------- 264 (356)
.+.. ++|+.|++.++. +.......+..++ +|+.|+++++. ++......+
T Consensus 170 ~l~~--~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 170 PLQG--KTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp HHHH--CSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred cccC--CccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccc
Confidence 3211 788888888742 2221111222233 49999999882 322111111
Q ss_pred ---------------hc--CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEe
Q 018439 265 ---------------AK--CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLD 327 (356)
Q Consensus 265 ---------------~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 327 (356)
.. .++|++|+++++. +.... ......+++|+.|+++++ .++......+ ..+ ++|++|+
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l-~~L~~L~ 320 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLN-SRVFETLKDLKVLNLAYN-KINKIADEAF-YGL-DNLQVLN 320 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEEC-SCCSSSCCCCCEEEEESC-CCCEECTTTT-TTC-SSCCEEE
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCc-ccccC-hhhhhcCCCCCEEECCCC-cCCCCChHHh-cCC-CCCCEEE
Confidence 11 2578888888753 33211 112234788999999886 4543221112 223 4899999
Q ss_pred cCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 328 VNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 328 l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
+++|. +.. ..+.....+++|+.|+++
T Consensus 321 Ls~N~-l~~-~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 321 LSYNL-LGE-LYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp EESCC-CSC-CCSCSCSSCTTCCEEECC
T ss_pred CCCCC-CCc-cCHHHhcCCCCCCEEECC
Confidence 98875 221 112233457888888875
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.09 E-value=3.2e-12 Score=106.03 Aligned_cols=180 Identities=18% Similarity=0.158 Sum_probs=110.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
+++++|+++++. +..... .....+++|++|+++++ .++... ...+..+++|++|+++++ .+.... ......+++
T Consensus 37 ~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPS-KAFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQALP-IGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSC-CSCCCT-TSSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCCC-TTTTTTCSS
T ss_pred CCCCEEECcCCC-CCeeCH-HHhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcCC-HhHcccccC
Confidence 579999998863 332211 12356789999999887 444221 112346788999999874 343211 122345788
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|++|+++++ .++... ...+..+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++|++|
T Consensus 111 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEE
Confidence 999999874 443211 122456888999999884 333322233556788999999887 4544333446677888999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
++++| .++.... .....+++|+.|++.+++
T Consensus 187 ~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 98876 4432211 122347888888888764
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.09 E-value=3.4e-12 Score=105.88 Aligned_cols=180 Identities=19% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (356)
+++++|+++++. +.. +....+..+++|++|+++++. +.... ..+...+++|++|+++++ .++.... ..+.
T Consensus 37 ~~l~~L~l~~n~-l~~-----~~~~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSS-----LPSKAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFD 106 (270)
T ss_dssp TTCSEEECCSSC-CSC-----CCTTSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTT
T ss_pred CCCCEEECcCCC-CCe-----eCHHHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcc
Confidence 567888887653 221 111124566788888887752 33111 112245778888888876 4432211 1234
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCC
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (356)
.+++|++|+++++ .++... ......+++|++|+++++ .++... ...+..+++|++|++.++ .+.......+..++
T Consensus 107 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 107 QLVNLAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLT 181 (270)
T ss_dssp TCSSCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred cccCCCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEecCC-cCcEeChhHhccCC
Confidence 5778888888774 333211 111234778888888874 443211 112456788888888774 33322222345677
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (356)
+|++|+++++ .++......+..+++|+.|+++++.
T Consensus 182 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 182 ELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 8888888877 4544333345667788888887754
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=9.4e-11 Score=107.72 Aligned_cols=146 Identities=27% Similarity=0.283 Sum_probs=66.2
Q ss_pred ccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHh
Q 018439 111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190 (356)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 190 (356)
..+++|+.|+++++. +..... ...+++|+.|+++++ .++.. .. +..+++|++|+++++ .+.. +.. ...
T Consensus 62 ~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~--l~~-l~~ 129 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDEN-KIKDL--SS-LKDLKKLKSLSLEHN-GISD--ING-LVH 129 (605)
T ss_dssp GGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--TT-STTCTTCCEEECTTS-CCCC--CGG-GGG
T ss_pred ccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCC-CCCCC--hh-hccCCCCCEEEecCC-CCCC--Ccc-ccC
Confidence 344666666666542 221111 345566666666655 33321 11 234555666666553 2322 111 223
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+++|+.|+++++ .++.. ..+..+++|+.|+++++ .+.+... +..+++|+.|+|++| .+++. ..+..+++|
T Consensus 130 l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L 199 (605)
T 1m9s_A 130 LPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKN-HISDL--RALAGLKNL 199 (605)
T ss_dssp CTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCBC--GGGTTCTTC
T ss_pred CCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCC-CCCCC--hHHccCCCC
Confidence 555555555553 33321 22344555555555553 2221111 445555555555555 33321 234445555
Q ss_pred cEEecCCC
Q 018439 271 VSLNLTWC 278 (356)
Q Consensus 271 ~~L~l~~~ 278 (356)
+.|++++|
T Consensus 200 ~~L~L~~N 207 (605)
T 1m9s_A 200 DVLELFSQ 207 (605)
T ss_dssp SEEECCSE
T ss_pred CEEEccCC
Confidence 55555543
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.08 E-value=3.5e-13 Score=115.46 Aligned_cols=244 Identities=15% Similarity=0.084 Sum_probs=144.9
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.++++.|+++++. +..- ....+..+++|++|+++++ .+..... .....+++|++|+++++ .++.. ..
T Consensus 53 ~~~l~~L~l~~n~-i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l--~~-- 119 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISEL-----RKDDFKGLQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLYISKN-HLVEI--PP-- 119 (332)
T ss_dssp CTTCCEEECCSSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEECCSS-CCCSC--CS--
T ss_pred CCCCeEEECCCCc-CCcc-----CHhHhhCCCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEECCCC-cCCcc--Cc--
Confidence 4678899998764 3221 1111456789999999886 3442211 12356889999999887 44421 11
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGG-LQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (356)
...++|++|+++++ .+... .......+++|++|+++++ .++... ....+..+ +|+.|++.++. +... .. ..
T Consensus 120 ~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l-~~--~~ 191 (332)
T 2ft3_A 120 NLPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK-LTGI-PK--DL 191 (332)
T ss_dssp SCCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSC-CS--SS
T ss_pred cccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC-CCcc-Cc--cc
Confidence 11378999999885 34321 1112345889999999884 443211 11122334 88888888742 2210 00 12
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccc
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSN 321 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 321 (356)
.++|++|+++++ .++......+..+++|++|++++| .++..... ....+++|+.|+++++ .++. +......+ +
T Consensus 192 ~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l-~ 264 (332)
T 2ft3_A 192 PETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-KLSR--VPAGLPDL-K 264 (332)
T ss_dssp CSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-CCCB--CCTTGGGC-T
T ss_pred cCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-cCee--cChhhhcC-c
Confidence 368999999998 565544456778899999999986 44432211 2345899999999987 4552 11111223 4
Q ss_pred cccEEecCCCCCccHHHHHHHHh-----hCCcceEeeec
Q 018439 322 TLTTLDVNGCVGIKQRSRDELLQ-----LFPHLMCFKVH 355 (356)
Q Consensus 322 ~L~~L~l~~c~~~~~~~~~~~~~-----~~p~L~~l~l~ 355 (356)
+|++|+++++. ++......+.. ..+.|+.+++.
T Consensus 265 ~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 265 LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp TCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred cCCEEECCCCC-CCccChhHccccccccccccccceEee
Confidence 99999999875 33211122211 14667777654
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.08 E-value=2.8e-12 Score=107.40 Aligned_cols=200 Identities=18% Similarity=0.136 Sum_probs=104.4
Q ss_pred cccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHH
Q 018439 81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 160 (356)
Q Consensus 81 ~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 160 (356)
..+++++.+++.+.. ++. +. ....++++.|+++++ .+..... .....+++|++|+++++ .++.....
T Consensus 7 ~~l~~l~~l~~~~~~-l~~-----ip---~~~~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTA-----LP---PDLPKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRA-ELTKLQVD- 73 (290)
T ss_dssp ECSTTCCEEECTTSC-CSS-----CC---SCCCTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTS-CCCEEECC-
T ss_pred cccCCccEEECCCCC-CCc-----CC---CCCCCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCC-ccCcccCC-
Confidence 345667777776542 221 11 112357788888775 3332211 12345677888887776 44332111
Q ss_pred HHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc
Q 018439 161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240 (356)
Q Consensus 161 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 240 (356)
..+++|++|+++++ .+.. +......+++|+.|+++++ .++.. ....+..+++|++|++.++ .+.......+.
T Consensus 74 --~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 145 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGN-ELKTLPPGLLT 145 (290)
T ss_dssp --SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred --CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCC-CCCccChhhcc
Confidence 35677777777764 3332 2222334677777777763 33321 0112445677777777764 33222222234
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
.+++|+.|+++++ .++......+..+++|++|+++++ .++.. ..-....++|+.|++.+++
T Consensus 146 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~i--p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTI--PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCC--CTTTTTTCCCSEEECCSCC
T ss_pred cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCcc--ChhhcccccCCeEEeCCCC
Confidence 5667777777776 344332233455677777777764 33311 1111124567777777654
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=1.1e-12 Score=109.36 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=100.6
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (356)
+++++|+++++. ++.... ..+..+++|++|+++++ .+..... .....+++|++|+++++ .++..... .+.
T Consensus 28 ~~l~~L~ls~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGS-----YSFFSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALG-AFS 97 (276)
T ss_dssp TTCCEEECTTCC-CCEECT-----TTTTTCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTT-TTT
T ss_pred CCccEEECCCCc-ccccCH-----hHhccccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCC-ccCccChh-hhc
Confidence 467788887653 222110 11345677888888776 3332111 11245677777777766 33322111 123
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCh---HHHHHhc
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD---EAYKKIS 240 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~ 240 (356)
.+++|++|++.++ .+...... ....+++|++|+++++ .++...++..+..+++|++|+++++ .+.. ..+..+.
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 173 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred CCccccEEECCCC-CccccCch-hcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh
Confidence 5677777777764 22221000 1234677777777763 3332222233455677777777764 2222 2233333
Q ss_pred cCCCCC-EEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 241 LLAHLK-FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 241 ~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
.++.|. +|+++++ .++..... .....+|++|++++|. ++... ......+++|+.|+++++
T Consensus 174 ~L~~l~l~L~ls~n-~l~~~~~~-~~~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 174 QMPLLNLSLDLSLN-PMNFIQPG-AFKEIRLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TCTTCCEEEECCSS-CCCEECTT-SSCSCCEEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCSS
T ss_pred hccccceeeecCCC-cccccCcc-ccCCCcccEEECCCCc-eeecC-HhHhcccccccEEEccCC
Confidence 344444 6677666 33322111 1123367777777643 33211 112234667777777654
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.06 E-value=2.3e-12 Score=107.29 Aligned_cols=203 Identities=17% Similarity=0.106 Sum_probs=123.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|++|+++++ .+...... ....+++|++|+++++ .++..... .+..+++|++|+++++ .++.... .....+++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLAL-GAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT-TTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECT-TTTTTCTT
T ss_pred CCccEEECCCC-cccccCHh-HhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccCh-hhhcCCcc
Confidence 56999999886 34432221 2356889999999988 55432211 2346789999999885 3433111 12345789
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCh-HHHHHhccCCCCCEEecCCCCCCch---HHHHHhhcCCC
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGAQNLSD---EGLACIAKCKN 269 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~ 269 (356)
|++|+++++ .+.... ...+..+++|++|+++++. +.. .....+..+++|++|+++++ .++. ..+..+.+++.
T Consensus 102 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVET-NLASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CCEEECTTS-CCCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred ccEEECCCC-CccccC-chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccc
Confidence 999999885 333211 1124568899999998853 322 12345677899999999988 4443 23344444444
Q ss_pred Cc-EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 270 LV-SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 270 L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
|. +|+++++ .++...... ....+|+.|+++++ .++..... ....+ ++|++|++++++
T Consensus 178 l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n-~l~~~~~~-~~~~l-~~L~~L~l~~N~ 235 (276)
T 2z62_A 178 LNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTN-QLKSVPDG-IFDRL-TSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSS-CCSCCCTT-TTTTC-CSCCEEECCSSC
T ss_pred cceeeecCCC-cccccCccc--cCCCcccEEECCCC-ceeecCHh-Hhccc-ccccEEEccCCc
Confidence 54 8899875 444321111 12347999999987 45532211 11223 489999998654
No 95
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=1.6e-08 Score=78.37 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=71.3
Q ss_pred HHHHHHhcCCCCcEEEcCCCCCCChHHHHHh----ccCCCCCEEecCCCCCCchHHHHHhhc----CCCCcEEecCCCCC
Q 018439 209 GLQKILIKCSSLRSLNLYALSGFTDEAYKKI----SLLAHLKFLDLCGAQNLSDEGLACIAK----CKNLVSLNLTWCVR 280 (356)
Q Consensus 209 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~ 280 (356)
.+..++...++|++|++.++..+.+.+...+ ...++|++|+|+++ .+++.+...++. .++|++|++++| .
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-F 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence 3444455556666666655324554444333 24566777777776 566666555443 467777777764 6
Q ss_pred CCHHHHHHHHhc---CCCCCEEEe--cCCCCCCHHHHHHHHHHc--cccccEEecCCCC
Q 018439 281 ITDVGVMAIAEG---CSSLEFLSL--FGIVGVTDKCLEVLSRFC--SNTLTTLDVNGCV 332 (356)
Q Consensus 281 ~~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~~~~l~~~~--~~~L~~L~l~~c~ 332 (356)
+++.+...++.. .++|++|++ .++ .+++.+...++... .++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 777766665533 456777777 554 67777665554321 1377777777764
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=1.3e-10 Score=87.03 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=15.5
Q ss_pred CCCCCEEecCCCCCCchH-HHHHhhcCCCCcEEecCCC
Q 018439 242 LAHLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 278 (356)
+++|++|+++++ .+++. ....+..+++|++|++++|
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence 444444444444 23321 2233444455555555543
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=7.3e-11 Score=108.44 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=76.6
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCCh-HHHHHHHhcCCCCcEEEcCCCCCCCh-HHHHHhcc
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISL 241 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 241 (356)
.+++|++|+++++ .+++. .......+++|+.|+++++ .++. ..++..+..+++|+.|+++++. +.. .....+..
T Consensus 351 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred CCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 4556666666663 33321 1111234566666666663 4432 1233334556667777776632 221 11111334
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcC-CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcc
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKC-KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCS 320 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 320 (356)
+++|++|+++++ .+++... ..+ ++|++|++++| .++... ..+. .+++|+.|+++++ .++..... ....+
T Consensus 427 l~~L~~L~l~~n-~l~~~~~---~~l~~~L~~L~L~~N-~l~~ip-~~~~-~l~~L~~L~L~~N-~l~~l~~~-~~~~l- 496 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSVF---RCLPPKVKVLDLHNN-RIMSIP-KDVT-HLQALQELNVASN-QLKSVPDG-VFDRL- 496 (562)
T ss_dssp CTTCCEEECCSS-CCCGGGG---SSCCTTCSEEECCSS-CCCCCC-TTTT-SSCCCSEEECCSS-CCCCCCTT-STTTC-
T ss_pred cccCCEEECCCC-CCCcchh---hhhcCcCCEEECCCC-cCcccC-hhhc-CCCCCCEEECCCC-CCCCCCHH-HHhcC-
Confidence 566777777666 3443221 122 56777777765 343211 1112 4677777777775 34421111 01122
Q ss_pred ccccEEecCCCCCc
Q 018439 321 NTLTTLDVNGCVGI 334 (356)
Q Consensus 321 ~~L~~L~l~~c~~~ 334 (356)
++|+.|++++++-.
T Consensus 497 ~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 497 TSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCCCEECCSCCBC
T ss_pred CCCCEEEecCCCcC
Confidence 37777777776543
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=2.9e-10 Score=104.46 Aligned_cols=165 Identities=27% Similarity=0.300 Sum_probs=84.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|+.|+++++. +... .. ...+++|+.|+++++ .++.... +..+++|+.|+++++ .+.. +.. ...+++
T Consensus 43 ~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~ 110 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSS-LKDLKK 110 (605)
T ss_dssp TTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCC--CTT-STTCTT
T ss_pred CCCCEEECcCCC-CCCC--hH-HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCC--Chh-hccCCC
Confidence 556666665542 2211 11 245666666666665 3332211 345666666666664 3332 111 233566
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|+.|+++++ .+.. +. .+..+++|+.|+++++ .+... ..+..+++|+.|+|++| .+.+... +..+++|++|
T Consensus 111 L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 111 LKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp CCEEECTTS-CCCC--CG-GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEE
T ss_pred CCEEEecCC-CCCC--Cc-cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEE
Confidence 666666664 3332 11 2445666666666664 22221 34556666666666666 3433211 5566666666
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 274 NLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
+|++| .+++. .. ...+++|+.|++++|
T Consensus 181 ~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 181 YLSKN-HISDL--RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp ECCSS-CCCBC--GG-GTTCTTCSEEECCSE
T ss_pred ECcCC-CCCCC--hH-HccCCCCCEEEccCC
Confidence 66664 33332 11 233566666666665
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.99 E-value=4.1e-13 Score=109.36 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=6.2
Q ss_pred CCCCEEEecCC
Q 018439 294 SSLEFLSLFGI 304 (356)
Q Consensus 294 ~~L~~L~l~~~ 304 (356)
++|+.|+++++
T Consensus 205 ~~L~~L~l~~N 215 (239)
T 2xwt_C 205 SGPSLLDVSQT 215 (239)
T ss_dssp BCCSEEECTTC
T ss_pred cCCcEEECCCC
Confidence 55566666554
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=2.7e-10 Score=85.29 Aligned_cols=84 Identities=27% Similarity=0.353 Sum_probs=35.0
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (356)
.+++|+.|+++++ .+... ..+..+++|++|+++++ .++......+..+++|++|++++| .+++.........+++
T Consensus 40 ~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLEN 114 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTT
T ss_pred hcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCC
Confidence 3455555555543 22211 23334455555555554 233222222333455555555543 3333222122233455
Q ss_pred CCEEEecCC
Q 018439 296 LEFLSLFGI 304 (356)
Q Consensus 296 L~~L~l~~~ 304 (356)
|+.|++++|
T Consensus 115 L~~L~l~~N 123 (149)
T 2je0_A 115 LKSLDLFNC 123 (149)
T ss_dssp CCEEECTTC
T ss_pred CCEEeCcCC
Confidence 555555544
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.93 E-value=7.1e-10 Score=102.12 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=34.6
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (356)
++|++|+++++. ++. + ...+++|+.|+++++. ++. + ...+++|++|+++++ .++.. . .
T Consensus 61 ~~L~~L~L~~N~-l~~-----l----p~~l~~L~~L~Ls~N~-l~~--l---p~~l~~L~~L~Ls~N-~l~~l--~---~ 118 (622)
T 3g06_A 61 AHITTLVIPDNN-LTS-----L----PALPPELRTLEVSGNQ-LTS--L---PVLPPGLLELSIFSN-PLTHL--P---A 118 (622)
T ss_dssp TTCSEEEECSCC-CSC-----C----CCCCTTCCEEEECSCC-CSC--C---CCCCTTCCEEEECSC-CCCCC--C---C
T ss_pred CCCcEEEecCCC-CCC-----C----CCcCCCCCEEEcCCCc-CCc--C---CCCCCCCCEEECcCC-cCCCC--C---C
Confidence 566777776653 221 1 1134667777776653 321 1 114566666666665 33321 0 1
Q ss_pred hCCcCcEEeccC
Q 018439 164 NCKHIIDLNLSG 175 (356)
Q Consensus 164 ~~~~L~~L~l~~ 175 (356)
.+++|+.|++++
T Consensus 119 ~l~~L~~L~L~~ 130 (622)
T 3g06_A 119 LPSGLCKLWIFG 130 (622)
T ss_dssp CCTTCCEEECCS
T ss_pred CCCCcCEEECCC
Confidence 234555555554
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=1.2e-10 Score=89.19 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=16.5
Q ss_pred hccCCCCCEEecCCCCCCchHHH---HHhhcCCCCcEEecCCC
Q 018439 239 ISLLAHLKFLDLCGAQNLSDEGL---ACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 278 (356)
+..+++|++|+++++ .++.... ..+..+++|++|++++|
T Consensus 116 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 116 LKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp GSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 334445555555544 2222111 23344455555555443
No 103
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=6.3e-11 Score=99.13 Aligned_cols=177 Identities=18% Similarity=0.093 Sum_probs=98.4
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.++++.|+++++. +.... ...+..+++|+.|+++++ .++.... ...+++|+.|+++++ .++. +...+
T Consensus 30 ~~~l~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~--l~~~~ 96 (290)
T 1p9a_G 30 PKDTTILHLSENL-LYTFS-----LATLMPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHN-QLQS--LPLLG 96 (290)
T ss_dssp CTTCCEEECTTSC-CSEEE-----GGGGTTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSS-CCSS--CCCCT
T ss_pred CCCCCEEEcCCCc-CCccC-----HHHhhcCCCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCC-cCCc--Cchhh
Confidence 3567788887664 22111 111445678888888775 3332211 145778888888877 4432 12223
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|+++++ .++... ......+++|++|+++++ .++.. ....+..+++|+.|+++++ .+.......+..+
T Consensus 97 ~~l~~L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 171 (290)
T 1p9a_G 97 QTLPALTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAGLLNGL 171 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTC
T ss_pred ccCCCCCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccCHHHhcCc
Confidence 45678888888774 333211 111234678888888774 44321 1122345778888888774 3332222223456
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCC
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (356)
++|++|+++++ .++.. ...+...++|+.|++++++
T Consensus 172 ~~L~~L~L~~N-~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 172 ENLDTLLLQEN-SLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECCSS-CCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCCCEEECCCC-cCCcc-ChhhcccccCCeEEeCCCC
Confidence 78888888877 34311 1223445678888887654
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=9.7e-08 Score=73.92 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=74.3
Q ss_pred HHHHHHhCCCCcEEecCCCCCCChHHHHHH---HhcCCCCcEEEcCCCCCCChHHHHHh----ccCCCCCEEecCCCCCC
Q 018439 184 LQLIADNYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTDEAYKKI----SLLAHLKFLDLCGAQNL 256 (356)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~ 256 (356)
+.......++|++|+++++..+++.+...+ +...++|++|+++++ .+.+.+...+ ...++|++|+|+++ .+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 334444455555555555324544433332 233456666666663 4555444333 34567888888877 67
Q ss_pred chHHHHHhh----cCCCCcEEec--CCCCCCCHHHHHHHH---hcCCCCCEEEecCCCCCCHHH
Q 018439 257 SDEGLACIA----KCKNLVSLNL--TWCVRITDVGVMAIA---EGCSSLEFLSLFGIVGVTDKC 311 (356)
Q Consensus 257 ~~~~~~~l~----~~~~L~~L~l--~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~ 311 (356)
++.+...++ ..++|++|++ ++ +.+++.+...+. ...++|++|+++++ .+++.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 777665554 3578889998 54 578887765554 33578999999886 566554
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.88 E-value=9.8e-11 Score=95.91 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=36.7
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (356)
.+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++|++|++++| .++.... .....+++
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~ 180 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGK 180 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred ccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCC
Confidence 3445555555442 222111112234455555555555 333222223445556666666554 2221111 11223556
Q ss_pred CCEEEecCC
Q 018439 296 LEFLSLFGI 304 (356)
Q Consensus 296 L~~L~l~~~ 304 (356)
|+.|++.++
T Consensus 181 L~~L~l~~N 189 (251)
T 3m19_A 181 LQTITLFGN 189 (251)
T ss_dssp CCEEECCSC
T ss_pred CCEEEeeCC
Confidence 666666654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.84 E-value=1.1e-09 Score=90.08 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=71.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|+.|+++++ .+.... ....+++|+.|+++++ .++.... +..+++|++|+++++ .++. +..+. .++
T Consensus 41 ~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~--~~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIP--SAC 107 (263)
T ss_dssp TTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCC--CSS
T ss_pred CcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCccc--cCc
Confidence 66666666665 333211 1245666777777666 3433221 345666666666664 3322 11111 156
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|+.|+++++ .++.. . .+..+++|+.|+++++ .+.+. ..+..+++|++|+++++ .+++. ..+..+++|+.|
T Consensus 108 L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L 177 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNN-KLKSI--VMLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWI 177 (263)
T ss_dssp CCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTS-CCCBC--GGGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEE
T ss_pred ccEEEccCC-ccCCC--h-hhcCcccccEEECCCC-cCCCC--hHHccCCCCCEEECCCC-cCcch--HHhccCCCCCEE
Confidence 666666663 34321 1 1445566666666653 23221 23445566666666665 33332 344555666666
Q ss_pred ecCCC
Q 018439 274 NLTWC 278 (356)
Q Consensus 274 ~l~~~ 278 (356)
+++++
T Consensus 178 ~l~~N 182 (263)
T 1xeu_A 178 DLTGQ 182 (263)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 66554
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.83 E-value=1.7e-10 Score=94.46 Aligned_cols=134 Identities=18% Similarity=0.138 Sum_probs=84.9
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCC
Q 018439 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (356)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (356)
.+++|++|+++++ .++.. ....+..+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++
T Consensus 57 ~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 57 GLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTK 132 (251)
T ss_dssp TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCc
Confidence 3567777777663 33321 1122455778888888774 333322234567899999999998 565444444677899
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 270 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
|++|+++++ .++.... .....+++|+.|+++++ .++......+ ... ++|++|++++++
T Consensus 133 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l-~~L~~L~l~~N~ 190 (251)
T 3m19_A 133 LKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTN-QLQSVPHGAF-DRL-GKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTT-TTC-TTCCEEECCSCC
T ss_pred ccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCC-cCCccCHHHH-hCC-CCCCEEEeeCCc
Confidence 999999986 4443221 12334789999999987 4553221122 122 499999999876
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.82 E-value=1.2e-11 Score=100.59 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=124.8
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeec-CCccCHHHHHHHH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW-NVRVTDIGIQHLV 162 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~ 162 (356)
.+++.|+++++. ++. +....+..+++|++|+++++..+...... ....+++|++|++++ + .++.... ..+
T Consensus 31 ~~l~~L~l~~n~-l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n-~l~~i~~-~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTR-NLTYIDP-DAL 101 (239)
T ss_dssp TTCCEEEEESCC-CSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEET-TCCEECT-TSE
T ss_pred CcccEEEEeCCc-ceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCC-CeeEcCH-HHh
Confidence 478889988764 321 11112456799999999987424322111 225689999999997 5 5543221 123
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCc---EEecCCCCCCChHHHHHHHhcCCCCc-EEEcCCCCCCChHHHHH
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE---SLNLTRCVKLTDGGLQKILIKCSSLR-SLNLYALSGFTDEAYKK 238 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~ 238 (356)
..+++|++|++.++ .++. ++. ...+++|+ .|+++++..++... ...+..+++|+ .|+++++ .+..... .
T Consensus 102 ~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n-~l~~i~~-~ 174 (239)
T 2xwt_C 102 KELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNN-GFTSVQG-Y 174 (239)
T ss_dssp ECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSC-CCCEECT-T
T ss_pred CCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCC-CCcccCH-h
Confidence 46789999999885 3433 222 33477777 99998842444211 11245689999 9999884 3332111 1
Q ss_pred hccCCCCCEEecCCCCCCchHHHHHhhcC-CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 239 ISLLAHLKFLDLCGAQNLSDEGLACIAKC-KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
....++|++|+++++..++......+..+ ++|++|+++++ .++.... ..+++|+.|.+.++.
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC-
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCcc
Confidence 22237899999999853554444456777 89999999985 4442111 137788888888764
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=4.6e-10 Score=85.84 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=24.9
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
..+++|++|+++++ .+.......+..+++|++|++++| .+++.........+++|+.|+++++
T Consensus 68 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 68 PKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred ccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence 34445555555544 222211122233455555555543 2332111111223455555555554
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.80 E-value=2.4e-09 Score=98.63 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=42.7
Q ss_pred ccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHH
Q 018439 82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 161 (356)
Q Consensus 82 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 161 (356)
.+++|++|+++++. ++. + ...+++|++|+++++. +... ...+++|+.|+++++ .++..
T Consensus 79 ~l~~L~~L~Ls~N~-l~~-----l----p~~l~~L~~L~Ls~N~-l~~l-----~~~l~~L~~L~L~~N-~l~~l----- 136 (622)
T 3g06_A 79 LPPELRTLEVSGNQ-LTS-----L----PVLPPGLLELSIFSNP-LTHL-----PALPSGLCKLWIFGN-QLTSL----- 136 (622)
T ss_dssp CCTTCCEEEECSCC-CSC-----C----CCCCTTCCEEEECSCC-CCCC-----CCCCTTCCEEECCSS-CCSCC-----
T ss_pred cCCCCCEEEcCCCc-CCc-----C----CCCCCCCCEEECcCCc-CCCC-----CCCCCCcCEEECCCC-CCCcC-----
Confidence 35788899998764 321 1 1245788888888763 3321 114567777777766 33321
Q ss_pred HHhCCcCcEEeccCC
Q 018439 162 VKNCKHIIDLNLSGC 176 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~ 176 (356)
...+++|++|+++++
T Consensus 137 p~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 137 PVLPPGLQELSVSDN 151 (622)
T ss_dssp CCCCTTCCEEECCSS
T ss_pred CCCCCCCCEEECcCC
Confidence 112466777777664
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.79 E-value=3.6e-09 Score=87.09 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=101.4
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhc
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK 216 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (356)
..+++|++|+++++ .++... . +..+++|++|+++++ .+++. .. ...+++|++|+++++ .++. +.. ...
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~--~~-l~~l~~L~~L~L~~N-~l~~--l~~-~~~ 105 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLA--G-MQFFTNLKELHLSHN-QISDL--SP-LKDLTKLEELSVNRN-RLKN--LNG-IPS 105 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCT--T-GGGCTTCCEEECCSS-CCCCC--GG-GTTCSSCCEEECCSS-CCSC--CTT-CCC
T ss_pred hhcCcCcEEECcCC-Ccccch--H-HhhCCCCCEEECCCC-ccCCC--hh-hccCCCCCEEECCCC-ccCC--cCc-ccc
Confidence 45789999999988 555432 2 457899999999985 45442 22 456899999999985 4543 111 122
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (356)
++|+.|+++++ .+.+. ..+..+++|++|+++++ .+++. ..+..+++|++|++++| .+++. .....+++|
T Consensus 106 -~~L~~L~L~~N-~l~~~--~~l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L 174 (263)
T 1xeu_A 106 -ACLSRLFLDNN-ELRDT--DSLIHLKNLEILSIRNN-KLKSI--VMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKV 174 (263)
T ss_dssp -SSCCEEECCSS-CCSBS--GGGTTCTTCCEEECTTS-CCCBC--GGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCC
T ss_pred -CcccEEEccCC-ccCCC--hhhcCcccccEEECCCC-cCCCC--hHHccCCCCCEEECCCC-cCcch---HHhccCCCC
Confidence 88999999985 44432 35678899999999988 45543 35778899999999885 45543 223457889
Q ss_pred CEEEecCC
Q 018439 297 EFLSLFGI 304 (356)
Q Consensus 297 ~~L~l~~~ 304 (356)
+.|+++++
T Consensus 175 ~~L~l~~N 182 (263)
T 1xeu_A 175 NWIDLTGQ 182 (263)
T ss_dssp CEEEEEEE
T ss_pred CEEeCCCC
Confidence 99999876
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=4.8e-10 Score=102.39 Aligned_cols=125 Identities=19% Similarity=0.225 Sum_probs=79.6
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
..|+.|+++++ .++. ++. +..+++|+.|+++++ .+. .....++.+++|++|+++++ .++. ++.++.+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDN-ALEN--VDGVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSS-CCCC--CGGGTTCSSCC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECCCC-CCCC--CcccCCCCCCc
Confidence 46888888884 5543 333 567888888888884 333 22345678888999999888 4554 23677888899
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH--HHHHHHHHccccccEEec
Q 018439 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDK--CLEVLSRFCSNTLTTLDV 328 (356)
Q Consensus 272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~~L~~L~l 328 (356)
+|++++| .++..........+++|+.|+++++. ++.. ....+...+ ++|+.|++
T Consensus 512 ~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~l-p~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEML-PSVSSILT 567 (567)
T ss_dssp EEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHC-TTCSEEEC
T ss_pred EEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHC-cccCccCC
Confidence 9998875 44432201223348889999998863 4321 122233333 48888764
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=9.7e-10 Score=100.38 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=86.1
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
..|+.|+++++ .+.. +..+..+++|+.|+++++ .++. ....++.+++|+.|++++| .++.. . -...+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~~~~l~~L~~L~Ls~N-~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~l--p-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCHLEQLLLVTHLDLSHN-RLRA-LPPALAALRCLEVLQASDN-ALENV--D-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCCGGGGTTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSS-CCCCC--G-GGTTCSSCC
T ss_pred cCceEEEecCC-CCCC--CcCccccccCcEeecCcc-cccc-cchhhhcCCCCCEEECCCC-CCCCC--c-ccCCCCCCc
Confidence 46999999985 4433 123778899999999998 4552 2246788999999999986 55542 2 234589999
Q ss_pred EEEecCCCCCCHHH-HHHHHHHccccccEEecCCCCCcc-HHHHHHHHhhCCcceEeee
Q 018439 298 FLSLFGIVGVTDKC-LEVLSRFCSNTLTTLDVNGCVGIK-QRSRDELLQLFPHLMCFKV 354 (356)
Q Consensus 298 ~L~l~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~~~p~L~~l~l 354 (356)
.|+++++ .++... ...+. .+ ++|+.|++++++-.. ......+...+|+|+.|++
T Consensus 512 ~L~Ls~N-~l~~~~~p~~l~-~l-~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNN-RLQQSAAIQPLV-SC-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSS-CCCSSSTTGGGG-GC-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCC-CCCCCCCcHHHh-cC-CCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999987 555432 22222 23 499999999986322 1123456667999999874
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.62 E-value=1.3e-10 Score=108.29 Aligned_cols=184 Identities=16% Similarity=0.090 Sum_probs=102.6
Q ss_pred hCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 018439 138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC 217 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (356)
.+++|+.+++..+..... ......+++|+.+++.++...... -......+++++.++++.+ .+.. ........+
T Consensus 395 ~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n-~l~~-~~~~~~~~~ 468 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHT-HTRV-AFNGIFNGL 468 (635)
T ss_dssp SCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTS-CCEE-CCTTTTTTC
T ss_pred hhhhhhhhhccccccccc---cccccccccccchhhhhccccccc-ccccccccccccccccccc-cccc-ccccccccc
Confidence 445666666554421110 001124566777766653221110 0111234677777777763 2221 112234567
Q ss_pred CCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 018439 218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297 (356)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 297 (356)
+.|+.|++.++..........+..+++|++|++++| .++......+..+++|++|++++| .++.... .....+++|+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~ 545 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQ 545 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCC
Confidence 888999998753222111223456789999999998 566544456778899999999986 4443211 1234578999
Q ss_pred EEEecCCCCCCHHHHHHHHHHccccccEEecCCCC
Q 018439 298 FLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 298 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~ 332 (356)
.|+++++ .++......+. ..+++|++|++++++
T Consensus 546 ~L~Ls~N-~l~~~~~~~l~-~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 546 VLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 578 (635)
T ss_dssp EEECTTS-CCCBCCSSCTT-CCCTTCCEEECTTCC
T ss_pred EEECCCC-cCCCCCHHHHH-hhhCcCCEEEeeCCC
Confidence 9999987 45432222111 222489999998755
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.62 E-value=1.5e-09 Score=86.07 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=27.5
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
.+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++|++|+++++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 4455555555542 222111112334555666666555 233222222444556666666554
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.61 E-value=4.4e-09 Score=90.87 Aligned_cols=132 Identities=18% Similarity=0.106 Sum_probs=59.8
Q ss_pred CCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 018439 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS 219 (356)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (356)
+.++.|+++++ .++......+...+++|++|+++++ .++... ......+++|++|+++++ .++.. ....+..+++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSN-HLHTL-DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCC-cCCcC-CHHHhCCCcC
Confidence 45777777776 4443221111114567777777663 333211 011223566666666663 33321 1112344566
Q ss_pred CcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHh---hcCCCCcEEecCCC
Q 018439 220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI---AKCKNLVSLNLTWC 278 (356)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~ 278 (356)
|+.|+++++ .+.......+..+++|++|+++++ .++......+ ..+++|++|+++++
T Consensus 114 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 114 LEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 666666653 232222223344556666666555 2322111112 33555555555553
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.60 E-value=3e-08 Score=76.26 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=7.1
Q ss_pred hhcCCCCcEEecCCC
Q 018439 264 IAKCKNLVSLNLTWC 278 (356)
Q Consensus 264 l~~~~~L~~L~l~~~ 278 (356)
+..+++|++|++++|
T Consensus 109 l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 109 LASLKSLTYLCILRN 123 (176)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhcCCCCCEEEecCC
Confidence 344445555555443
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.60 E-value=1.2e-08 Score=78.42 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=77.6
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+++|+.|+++++ .++. +..+....++|+.|+++++ .+... ..+..+++|++|+++++ .++......+..+++|
T Consensus 18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 345555555553 3331 1122222346677777663 33322 34556788888888888 4553322234678999
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH-HH-HHHHHHccccccEEecCCCC
Q 018439 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDK-CL-EVLSRFCSNTLTTLDVNGCV 332 (356)
Q Consensus 271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~-~~l~~~~~~~L~~L~l~~c~ 332 (356)
++|++++| .+++.........+++|+.|++++++ ++.. .. ..+...+ ++|+.|+++++.
T Consensus 91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l-~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKV-PQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHC-TTCSEETTEECC
T ss_pred CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHC-CccceeCCCcCC
Confidence 99999986 45442211123458999999999974 4321 11 1223344 499999999875
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.59 E-value=2.7e-08 Score=88.62 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=60.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|++|+++++ .+.. + ....++|++|+++++ .++. +.. +..+++|++|+++++ .++. ++ ...++
T Consensus 111 ~~L~~L~l~~n-~l~~--l---~~~~~~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N-~l~~--lp---~~~~~ 174 (454)
T 1jl5_A 111 QSLKSLLVDNN-NLKA--L---SDLPPLLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNN-SLKK--LP---DLPPS 174 (454)
T ss_dssp TTCCEEECCSS-CCSC--C---CSCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSS-CCSC--CC---CCCTT
T ss_pred CCCcEEECCCC-ccCc--c---cCCCCCCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCC-cCcc--cC---CCccc
Confidence 56666666654 2221 0 011246666666665 3332 112 345566666666653 2322 11 11346
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhc-cCCCCCEEecCCCCCCchHHHHHhhcCCCCcE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (356)
|++|+++++ .++. ++ .+..+++|++|++.++. +.. +. ..++|++|+++++ .+.. +..++.+++|++
T Consensus 175 L~~L~L~~n-~l~~--l~-~~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n-~l~~--lp~~~~l~~L~~ 241 (454)
T 1jl5_A 175 LEFIAAGNN-QLEE--LP-ELQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNN-ILEE--LPELQNLPFLTT 241 (454)
T ss_dssp CCEEECCSS-CCSS--CC-CCTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSS--CCCCTTCTTCCE
T ss_pred ccEEECcCC-cCCc--Cc-cccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCC-cCCc--ccccCCCCCCCE
Confidence 666666653 3322 11 13445566666665532 111 11 1235555555555 2321 112444555555
Q ss_pred EecCCC
Q 018439 273 LNLTWC 278 (356)
Q Consensus 273 L~l~~~ 278 (356)
|++++|
T Consensus 242 L~l~~N 247 (454)
T 1jl5_A 242 IYADNN 247 (454)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555543
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.59 E-value=2.3e-09 Score=85.08 Aligned_cols=133 Identities=22% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCC
Q 018439 165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH 244 (356)
Q Consensus 165 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 244 (356)
.++|++|+++++ .++.. .......+++|++|+++++ .++.. ....+..+++|++|++.++ .+.......+..+++
T Consensus 27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccC
Confidence 467899999885 34321 1122345788999999874 44421 1123456788899999874 333222223456788
Q ss_pred CCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
|++|+++++ .++......+..+++|++|+++++ .++... ......+++|+.|++++++
T Consensus 102 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 102 LKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCC
Confidence 888888887 455433334567788888888875 343211 1223347788888888763
No 121
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.56 E-value=6.6e-06 Score=63.33 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh----ccCCCCCEEecCCCCCCchHHHHHhhc----CCCCcEEecCCCC
Q 018439 208 GGLQKILIKCSSLRSLNLYALSGFTDEAYKKI----SLLAHLKFLDLCGAQNLSDEGLACIAK----CKNLVSLNLTWCV 279 (356)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~ 279 (356)
+.+..+...-+.|++|++.++..+.+.+...+ ..-.+|+.|+|++| .+++.+...++. -+.|++|+|++ +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 34555555566777777765445665554443 35567888888888 677777666653 46788888887 4
Q ss_pred CCCHHHHHHHHhcCC---CCCEEEecCCC--CCCHHHHHHHHHH--ccccccEEecCCCC
Q 018439 280 RITDVGVMAIAEGCS---SLEFLSLFGIV--GVTDKCLEVLSRF--CSNTLTTLDVNGCV 332 (356)
Q Consensus 280 ~~~~~~~~~l~~~~~---~L~~L~l~~~~--~~~~~~~~~l~~~--~~~~L~~L~l~~c~ 332 (356)
.+++.+...++..+. .|++|+++++. .+++.+...++.. ..++|+.|++..+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 788888877776553 58888887542 4677665554431 12488888887643
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.55 E-value=8e-08 Score=85.52 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=58.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
++|++|+++++ .+.. ++. ...+++|++|+++++ .++. +. ...++|++|+++++ .+.. +.. ...+++
T Consensus 131 ~~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N-~l~~--lp---~~~~~L~~L~L~~n-~l~~--l~~-~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNN-SLKK--LP---DLPPSLEFIAAGNN-QLEE--LPE-LQNLPF 196 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSS--CCC-CTTCTT
T ss_pred CCCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCC-cCcc--cC---CCcccccEEECcCC-cCCc--Ccc-ccCCCC
Confidence 57777777775 3332 222 355677777777766 3332 11 12346777777664 3332 111 234666
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCC
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGA 253 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 253 (356)
|++|+++++ .++. ++ ...++|++|+++++ .+.. +..+..+++|++|+++++
T Consensus 197 L~~L~l~~N-~l~~--l~---~~~~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 197 LTAIYADNN-SLKK--LP---DLPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCEEECCSS-CCSS--CC---CCCTTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCc--CC---CCcCcccEEECcCC-cCCc--ccccCCCCCCCEEECCCC
Confidence 666666663 3321 10 11245666666653 2221 112445556666666555
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.55 E-value=4.6e-09 Score=90.77 Aligned_cols=161 Identities=20% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
+.++.|+++++ .++......+...+++|+.|+++++ .++..... .+..+++|++|+++++ .++.. .......+++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSN-HLHTL-DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCC-cCCcC-CHHHhCCCcC
Confidence 45788888876 3443222111126788888888877 44432211 1346788888888874 44331 1112335788
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCh---HHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCC-
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD---EAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN- 269 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~- 269 (356)
|+.|+++++ .++.. ....+..+++|++|+++++ .+.. ..+..+..+++|++|+++++ .++......+..+++
T Consensus 114 L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 114 LEVLLLYNN-HIVVV-DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAW 189 (361)
T ss_dssp CCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHH
T ss_pred CCEEECCCC-cccEE-CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHh
Confidence 888888874 44421 1123456788888888874 3322 11111245788888888887 455444445555555
Q ss_pred -CcEEecCCCCCCCH
Q 018439 270 -LVSLNLTWCVRITD 283 (356)
Q Consensus 270 -L~~L~l~~~~~~~~ 283 (356)
++.|+++++....+
T Consensus 190 ~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 190 VKNGLYLHNNPLECD 204 (361)
T ss_dssp HHTTEECCSSCEECC
T ss_pred hcceEEecCCCccCC
Confidence 37788877654333
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=3.3e-09 Score=84.86 Aligned_cols=133 Identities=20% Similarity=0.140 Sum_probs=81.0
Q ss_pred CcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCC
Q 018439 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (356)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (356)
+.+++|+++++ .++..........+++|+.|+++++ .++... ...+..+++|++|+++++ .+.......+..+++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEILLTSN-RLENVQHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSC
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCC
Confidence 46788888874 4443111122345788888888874 444211 113456788888888874 3433333345677888
Q ss_pred CEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
++|+++++ .++......+..+++|++|+++++ .++.... ..+..+++|+.|++++++
T Consensus 108 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 108 KTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred CEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecCcC
Confidence 88888887 455433345666788888888875 3432211 122346788888888764
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=6e-09 Score=83.30 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=62.4
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|+++++ .++... ......+++|++|+++++ .++.. ....+..+++|++|+++++ .+.......+..+
T Consensus 54 ~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 128 (220)
T 2v70_A 54 KKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEILLTSN-RLENV-QHKMFKGLESLKTLMLRSN-RITCVGNDSFIGL 128 (220)
T ss_dssp GGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCCC-CGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTC
T ss_pred ccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEECCCC-ccCcc-CHhHhcCCcCCCEEECCCC-cCCeECHhHcCCC
Confidence 34556666666553 232210 111233667777777663 33321 1122455777777777773 3333222345567
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCC
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (356)
++|++|+++++ .++......+..+++|++|+++++.
T Consensus 129 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 78888888887 4554334456678888888888764
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.52 E-value=5.7e-09 Score=83.44 Aligned_cols=132 Identities=16% Similarity=0.147 Sum_probs=81.4
Q ss_pred CcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCC
Q 018439 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (356)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (356)
++|++|++.++ .++... ......+++|+.|+++++ .++.. ....+.++++|++|+++++ .+.......+..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N-~i~~~-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNN-QISEL-APDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSS-CCCEE-CTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCC-cCCCc-CHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCC
Confidence 57889998874 443311 112234788899998884 44421 1223556788888888874 3332222234567888
Q ss_pred CEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
++|+++++ .++......+..+++|++|+++++ .++.... .....+++|+.|++.+++
T Consensus 107 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECH-HHHhCCCCCCEEEeCCCC
Confidence 88888888 455444455667788888888875 3332211 112346788888888764
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.50 E-value=8.1e-09 Score=82.55 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=48.6
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+++|++|+++++ .++.. ....+..+++|+.|++.++ .+.......+..+++|++|+++++ .++......+..+++|
T Consensus 79 l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 79 LRSLNSLVLYGN-KITEL-PKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CSSCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCC-cCCcc-CHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCC
Confidence 556666666653 33310 0112345677777777663 333222234556677888888777 4444333446667888
Q ss_pred cEEecCCCC
Q 018439 271 VSLNLTWCV 279 (356)
Q Consensus 271 ~~L~l~~~~ 279 (356)
++|+++++.
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 888888764
No 128
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.49 E-value=9.7e-10 Score=102.45 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=112.9
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCC
Q 018439 113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 192 (356)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 192 (356)
..+|+.+++..+.... .......+++|+.+++..+....... ......+++++.++++.+ .+... .......++
T Consensus 396 ~~~L~~L~~~~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~ 469 (635)
T 4g8a_A 396 TISLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLS 469 (635)
T ss_dssp CSCCCEEECCSCSEEE---ECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCT
T ss_pred hhhhhhhhcccccccc---ccccccccccccchhhhhcccccccc-cccccccccccccccccc-ccccc-cccccccch
Confidence 3567777766542111 11112457889999987653222111 112346788999998874 22211 112234578
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcE
Q 018439 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS 272 (356)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 272 (356)
+|+.|+++++.... ...+..+..+++|+.|+++++ .+.......+..+++|++|+|+++ .++......+..+++|++
T Consensus 470 ~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 470 SLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCE
T ss_pred hhhhhhhhhccccc-ccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCE
Confidence 99999998853221 112233566899999999985 454444445678899999999998 565544455778899999
Q ss_pred EecCCCCCCCHHHHHHHHhcC-CCCCEEEecCCCC
Q 018439 273 LNLTWCVRITDVGVMAIAEGC-SSLEFLSLFGIVG 306 (356)
Q Consensus 273 L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~ 306 (356)
|++++| .++......+. .+ ++|+.|++++++.
T Consensus 547 L~Ls~N-~l~~~~~~~l~-~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 547 LDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EECTTS-CCCBCCSSCTT-CCCTTCCEEECTTCCB
T ss_pred EECCCC-cCCCCCHHHHH-hhhCcCCEEEeeCCCC
Confidence 999986 44432212222 24 5799999998753
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.46 E-value=2e-08 Score=80.82 Aligned_cols=131 Identities=21% Similarity=0.163 Sum_probs=81.8
Q ss_pred CcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCC
Q 018439 166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL 245 (356)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 245 (356)
++|++|+++++ .++.. .......+++|++|+++++ .++.. ....+..+++|+.|+++++ .+.......+..+++|
T Consensus 40 ~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKL-EPGVFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCC-ccCcc-CHHHhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCC-cCCccChhHhCcchhh
Confidence 78999999885 44331 1122345788999999884 44321 1123456888999999884 4433222334567888
Q ss_pred CEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 018439 246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIV 305 (356)
Q Consensus 246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 305 (356)
++|+++++ .++.. ...+..+++|++|+++++ .++.... .....+++|+.|++.+++
T Consensus 115 ~~L~Ls~N-~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 115 KELFMCCN-KLTEL-PRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCSS-CCCSC-CTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CeEeccCC-ccccc-CcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 99998888 45421 234567788888888875 4442211 223447888888888864
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.45 E-value=3.3e-08 Score=77.64 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=16.5
Q ss_pred HhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccC
Q 018439 137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 175 (356)
..+++|++|+++++ .++.. . .+..+++|+.|++++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l--~-~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKI--S-SLSGMENLRILSLGR 79 (198)
T ss_dssp HHTTTCSEEECSEE-EESCC--C-CHHHHTTCCEEEEEE
T ss_pred hcCCCCCEEECCCC-CCccc--c-ccccCCCCCEEECCC
Confidence 34556666666554 33221 1 123345555555554
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.44 E-value=1e-07 Score=86.70 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=116.1
Q ss_pred CCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHH
Q 018439 84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 163 (356)
Q Consensus 84 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 163 (356)
.+++.|+++++. ++. +. ...+++|+.|+++++ .++. ++ ..+++|+.|+++++ .++. +.. +.
T Consensus 59 ~~L~~L~Ls~n~-L~~-----lp---~~l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS-----LP---DNLPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDN-RLST--LPE-LP 119 (571)
T ss_dssp TTCSEEECCSSC-CSC-----CC---SCCCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSC--CCC-CC
T ss_pred CCccEEEeCCCC-CCc-----cC---HhHcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCC-CCCC--cch-hh
Confidence 478888888763 332 11 112378999999886 4442 22 45789999999988 5554 222 11
Q ss_pred hCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCC
Q 018439 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243 (356)
Q Consensus 164 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 243 (356)
.+|++|+++++ .++. ++. .+++|+.|+++++ .++. ++. .+++|+.|+++++. +... ..+. +
T Consensus 120 --~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~l--p~l~--~ 180 (571)
T 3cvr_A 120 --ASLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTFL--PELP--E 180 (571)
T ss_dssp --TTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSCC--CCCC--T
T ss_pred --cCCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCCc--chhh--C
Confidence 28999999885 4443 222 4789999999884 4542 222 57899999998853 3221 1133 7
Q ss_pred CCCEEecCCCCCCchHHHHHhhc-----CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLS 316 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 316 (356)
+|++|+++++ .++.... +.. .+.|+.|++++| .++... ..+. .+++|+.|+++++ .++......+.
T Consensus 181 ~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l~~L~~L~L~~N-~l~~~~p~~l~ 251 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLPA--VPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SLDPTCTIILEDN-PLSSRIRESLS 251 (571)
T ss_dssp TCCEEECCSS-CCSSCCC--CC--------CCEEEECCSS-CCCCCC-GGGG-GSCTTEEEECCSS-SCCHHHHHHHH
T ss_pred CCCEEECcCC-CCCchhh--HHHhhhcccccceEEecCCC-cceecC-HHHh-cCCCCCEEEeeCC-cCCCcCHHHHH
Confidence 8999999988 4542111 222 123399999885 444311 1233 3889999999987 57765555443
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.40 E-value=6.5e-08 Score=88.07 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=117.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCC
Q 018439 114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 193 (356)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (356)
.+++.|+++++ .++. ++. ..+++|+.|+++++ .++. ++ ..+++|++|+++++ .++. ++. . ..+
T Consensus 59 ~~L~~L~Ls~n-~L~~--lp~--~l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~-l--~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS--LPD--NLPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDN-RLST--LPE-L--PAS 121 (571)
T ss_dssp TTCSEEECCSS-CCSC--CCS--CCCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSC--CCC-C--CTT
T ss_pred CCccEEEeCCC-CCCc--cCH--hHcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCC-CCCC--cch-h--hcC
Confidence 58999999986 4442 221 12588999999988 5553 22 35789999999985 4544 222 1 229
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEE
Q 018439 194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL 273 (356)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 273 (356)
|++|+++++ .++. ++. .+++|+.|+++++ .+... .. .+++|++|++++| .++... .+. ++|+.|
T Consensus 122 L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~l--p~--~l~~L~~L~Ls~N-~L~~lp--~l~--~~L~~L 185 (571)
T 3cvr_A 122 LKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTML--PE--LPTSLEVLSVRNN-QLTFLP--ELP--ESLEAL 185 (571)
T ss_dssp CCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCC--CC--CCTTCCEEECCSS-CCSCCC--CCC--TTCCEE
T ss_pred CCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCcC--CC--cCCCcCEEECCCC-CCCCcc--hhh--CCCCEE
Confidence 999999985 5543 222 5899999999985 33321 11 5689999999998 454321 133 899999
Q ss_pred ecCCCCCCCHHHH--HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHH
Q 018439 274 NLTWCVRITDVGV--MAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQR 337 (356)
Q Consensus 274 ~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~ 337 (356)
++++| .++.... ..+....+.|+.|++++| .++.. -..+.. . ++|+.|++++++ ++..
T Consensus 186 ~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~-l-~~L~~L~L~~N~-l~~~ 245 (571)
T 3cvr_A 186 DVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHI-PENILS-L-DPTCTIILEDNP-LSSR 245 (571)
T ss_dssp ECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCC-CGGGGG-S-CTTEEEECCSSS-CCHH
T ss_pred ECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceec-CHHHhc-C-CCCCEEEeeCCc-CCCc
Confidence 99986 4442111 011111233499999987 55521 111222 3 599999999986 4443
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.40 E-value=3.2e-08 Score=79.61 Aligned_cols=84 Identities=21% Similarity=0.166 Sum_probs=44.2
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+++|+.|+++++ .++.. ....+..+++|+.|+++++ .+. .....+..+++|++|+++++ .++......+..+++|
T Consensus 87 l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 87 LTQLTVLDLGTN-QLTVL-PSAVFDRLVHLKELFMCCN-KLT-ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSL 161 (229)
T ss_dssp CTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCC-SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcCEEECCCC-cCCcc-ChhHhCcchhhCeEeccCC-ccc-ccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCC
Confidence 455556655553 33210 0112334566666666663 222 11223456677777777776 4443322345667778
Q ss_pred cEEecCCCC
Q 018439 271 VSLNLTWCV 279 (356)
Q Consensus 271 ~~L~l~~~~ 279 (356)
+.|+++++.
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 888887753
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=3.4e-08 Score=77.53 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=16.5
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 201 (356)
..+++|++|+++++ .++. ++ ....+++|+.|++++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGR 79 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEE
T ss_pred hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCC
Confidence 34556666666553 2222 11 122345556655555
No 135
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.26 E-value=3.4e-05 Score=59.36 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=75.1
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCChHHHHHHH---hcCCCCcEEEcCCCCCCChHHHHHhc----cCCCCCEEecCCCCC
Q 018439 183 SLQLIADNYQELESLNLTRCVKLTDGGLQKIL---IKCSSLRSLNLYALSGFTDEAYKKIS----LLAHLKFLDLCGAQN 255 (356)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~ 255 (356)
.+..+..+-+.|++|+++++..+.+.+...+. ..-..|+.|++.+ +.+.+.+...++ .-+.|++|+|+.+ .
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-F 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-c
Confidence 34444445566666666653355554444333 3345677777776 355555554443 5678888888888 6
Q ss_pred CchHHHHHhhc----CCCCcEEecCCC-C-CCCHHHHHHHH---hcCCCCCEEEecCC
Q 018439 256 LSDEGLACIAK----CKNLVSLNLTWC-V-RITDVGVMAIA---EGCSSLEFLSLFGI 304 (356)
Q Consensus 256 ~~~~~~~~l~~----~~~L~~L~l~~~-~-~~~~~~~~~l~---~~~~~L~~L~l~~~ 304 (356)
+++.+...++. -+.|++|+++++ . .+++.+...+. ..-+.|++|++..+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 88888777654 356899999764 2 57776654443 33568888888754
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=5.6e-08 Score=82.84 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=61.8
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC-EEEecCCCCCCHHHHHHHHHHc
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE-FLSLFGIVGVTDKCLEVLSRFC 319 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~ 319 (356)
.+++|+.++++++ .++..+-..+..|++|++|++..+ +...+ ...+..|++|+ .+.+.+ .++..+-.. ...|
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c 296 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCGRLAGTLELPA--SVTAIEFGA-FMGC 296 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEEECT--TCCEECTTT-TTTC
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceeh-HHHhhCChhccEEEEEcc--cceEEchhh-hhCC
Confidence 3789999999886 355444456778889999999763 33211 12234588898 999976 333221111 2345
Q ss_pred cccccEEecCCCCCccHHHHHHHHhhCCcceEee
Q 018439 320 SNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFK 353 (356)
Q Consensus 320 ~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~ 353 (356)
. +|+.|++.+.. +..-. ......+++|+.++
T Consensus 297 ~-~L~~l~l~~n~-i~~I~-~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 D-NLRYVLATGDK-ITTLG-DELFGNGVPSKLIY 327 (329)
T ss_dssp T-TEEEEEECSSC-CCEEC-TTTTCTTCCCCEEE
T ss_pred c-cCCEEEeCCCc-cCccc-hhhhcCCcchhhhc
Confidence 5 89999986532 21100 22234578888775
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.17 E-value=4e-07 Score=71.02 Aligned_cols=62 Identities=23% Similarity=0.048 Sum_probs=26.1
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
..+++|++|+++++ .++......+..+++|++|+++++ .++.... ..+..+++|+.|++.++
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 75 SNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCC
Confidence 34445555555554 233222223444555555555543 2221110 11122455555555554
No 138
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.16 E-value=4.4e-07 Score=73.33 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=40.5
Q ss_pred CCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEeccccc
Q 018439 20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREM 67 (356)
Q Consensus 20 ~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~~~ 67 (356)
.+|+||+.+||+||+++|+.++++|||+|+.+ +.++.+|+.+-..+.
T Consensus 7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l-a~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNET-VRDPILWRYFLLRDL 53 (312)
T ss_dssp HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH-HTCHHHHHHHHHSSG
T ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hccchHHHHHHhccC
Confidence 34449999999999999999999999999987 789999998755443
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.12 E-value=9.9e-10 Score=94.55 Aligned_cols=227 Identities=14% Similarity=0.094 Sum_probs=122.1
Q ss_pred cCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHHHHH
Q 018439 83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 162 (356)
Q Consensus 83 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 162 (356)
.+++++|+++++. ++ .+....+..+++|++|+++++.-...... .....+++++++....+..++.... ..+
T Consensus 29 ~~~l~~L~Ls~N~-i~-----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~-~~f 100 (350)
T 4ay9_X 29 PRNAIELRFVLTK-LR-----VIQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINP-EAF 100 (350)
T ss_dssp CTTCSEEEEESCC-CS-----EECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECT-TSB
T ss_pred CCCCCEEEccCCc-CC-----CcCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCc-hhh
Confidence 3578899998764 32 12222256678999999988642221111 1124567776654433223332111 123
Q ss_pred HhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccC
Q 018439 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242 (356)
Q Consensus 163 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 242 (356)
..+++|++|++.++ .+.... ........++..|++.++..+.......+......++.|+++++ .+... .......
T Consensus 101 ~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i-~~~~f~~ 176 (350)
T 4ay9_X 101 QNLPNLQYLLISNT-GIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI-HNSAFNG 176 (350)
T ss_dssp CCCTTCCEEEEEEE-CCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE-CTTSSTT
T ss_pred hhcccccccccccc-ccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC-Chhhccc
Confidence 46789999998874 332210 00011245667777765444432111111112346788888873 33321 1112245
Q ss_pred CCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHcccc
Q 018439 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNT 322 (356)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 322 (356)
.+|+.+.+.++..++......+..+++|++|+++++ .++... ...+.+|++|.+.++.+++.-. .+ ... ++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~~~l~~lP--~l-~~l-~~ 247 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP----SYGLENLKKLRARSTYNLKKLP--TL-EKL-VA 247 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTCTTCCCCC--CT-TTC-CS
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC----hhhhccchHhhhccCCCcCcCC--Cc-hhC-cC
Confidence 678888887654555433345667889999999986 444311 1235678888887765544211 11 112 48
Q ss_pred ccEEecCC
Q 018439 323 LTTLDVNG 330 (356)
Q Consensus 323 L~~L~l~~ 330 (356)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 88888865
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.10 E-value=2.5e-07 Score=72.13 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=6.4
Q ss_pred hCCCCcEEecCC
Q 018439 190 NYQELESLNLTR 201 (356)
Q Consensus 190 ~~~~L~~L~l~~ 201 (356)
.+++|++|++++
T Consensus 52 ~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 52 RLPHLVKLELKR 63 (192)
T ss_dssp GCTTCCEEECCS
T ss_pred cCCCCCEEECCC
Confidence 355555555555
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.08 E-value=1.1e-06 Score=68.37 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=35.1
Q ss_pred hcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCC
Q 018439 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (356)
..+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++|+.|+++++.
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 75 SNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 34566666666552 232222223445667777777776 3443322345567778888887754
No 142
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.04 E-value=1.2e-06 Score=71.81 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCchHHHHHHHhCCChhhhH-HHHhccHHHHHHhccCCCcceEe
Q 018439 20 ETVPKVIRIMSTRLSQRDII-SLLLVSPWLHRTLVSYPSLWLVI 62 (356)
Q Consensus 20 ~~~peil~~If~~L~~~~~~-~~~~v~~~w~~~~~~~~~l~~~l 62 (356)
.+|+|++..||++|+.++++ ++++|||+|+.+ ..+|.+|+..
T Consensus 53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l-~~~~~~w~~~ 95 (297)
T 2e31_A 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLLK 95 (297)
T ss_dssp SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH-HTSHHHHHHH
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH-hcChHHHHHH
Confidence 44448999999999999999 999999999988 4678898865
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.99 E-value=6.2e-07 Score=69.87 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=15.5
Q ss_pred CccEEEeecCCccCHHHHHHHHHhCCcCcEEeccC
Q 018439 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175 (356)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 175 (356)
+|++|+++++ .++.......+..+++|++|++++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR 63 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCC
Confidence 5556666555 332211111123455566666655
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.99 E-value=1.2e-06 Score=67.30 Aligned_cols=87 Identities=21% Similarity=0.112 Sum_probs=44.9
Q ss_pred hcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 018439 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS 294 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 294 (356)
..+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++|++|+++++ .++... ......++
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~ 124 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVP-DGIFDRLT 124 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCT
T ss_pred cCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeC-HHHhcCCc
Confidence 34556666666553 222211122345566777777666 344322233455677777777764 333211 11223367
Q ss_pred CCCEEEecCCC
Q 018439 295 SLEFLSLFGIV 305 (356)
Q Consensus 295 ~L~~L~l~~~~ 305 (356)
+|+.|++++++
T Consensus 125 ~L~~L~l~~N~ 135 (177)
T 2o6r_A 125 SLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 77777777764
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.95 E-value=9e-07 Score=67.95 Aligned_cols=110 Identities=15% Similarity=0.024 Sum_probs=71.6
Q ss_pred CCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 018439 217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296 (356)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 296 (356)
.++|++|++.++ .+.......+..+++|++|+++++ .++......+..+++|++|+++++ .++... ......+++|
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccC-HHHhhCCccc
Confidence 357788888774 333222223567899999999998 565443344677899999999986 444321 1123347899
Q ss_pred CEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCC
Q 018439 297 EFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVG 333 (356)
Q Consensus 297 ~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~ 333 (356)
+.|+++++ .++..... ..... ++|++|++++++-
T Consensus 103 ~~L~l~~N-~l~~~~~~-~~~~l-~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 103 KELALDTN-QLKSVPDG-IFDRL-TSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCSS-CCSCCCTT-TTTTC-TTCCEEECCSSCB
T ss_pred CEEECcCC-cceEeCHH-HhcCC-cccCEEEecCCCe
Confidence 99999987 55532111 11222 4999999998863
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.93 E-value=1.6e-06 Score=81.73 Aligned_cols=82 Identities=26% Similarity=0.223 Sum_probs=35.5
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS 295 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 295 (356)
.+++|++|+|+++ .+. .....+..+++|++|+|+++ .++ .....++.+++|++|+|++| .++.. ..-+..+++
T Consensus 245 ~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~l--p~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSCFQLKYFYFFDN-MVTTL--PWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGGTTCSEEECCSS-CCCCC--CSSTTSCTT
T ss_pred CCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCCCCCCEEECCCC-CCCcc--ChhhhcCCC
Confidence 3455555555553 222 11223344555555555555 233 11222444555555555553 22211 111223455
Q ss_pred CCEEEecCC
Q 018439 296 LEFLSLFGI 304 (356)
Q Consensus 296 L~~L~l~~~ 304 (356)
|+.|+++++
T Consensus 318 L~~L~L~~N 326 (727)
T 4b8c_D 318 LQFLGVEGN 326 (727)
T ss_dssp CCCEECTTS
T ss_pred ccEEeCCCC
Confidence 555555554
No 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.91 E-value=3.7e-08 Score=84.71 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=104.6
Q ss_pred CcccCCccEeecCCCCCCchHHHHHHHHHhcccCCCccEEecCCCCCCCHHHHHHHHHhCCCccEEEeecCCccCHHHHH
Q 018439 80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159 (356)
Q Consensus 80 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 159 (356)
+..+++|++|+++++..... +....+..+++++++...++..+.... ......+++|++|+++++ .++...-.
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~-----i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~n-~l~~~~~~ 122 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT-GIKHLPDV 122 (350)
T ss_dssp STTCTTCCEEEEECCTTCCE-----ECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEEE-CCSSCCCC
T ss_pred HcCCCCCCEEECcCCCCCCc-----cChhHhhcchhhhhhhcccCCcccccC-chhhhhcccccccccccc-ccccCCch
Confidence 35678999999988753221 111114455677665443332333211 112356789999999887 33321100
Q ss_pred HHHHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHh
Q 018439 160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI 239 (356)
Q Consensus 160 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 239 (356)
. .....++..|++.++..+.......+......++.|+++++ .++. +....-...+|++|.+.+++.+.......+
T Consensus 123 ~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 123 H-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp T-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTT
T ss_pred h-hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccC--CChhhccccchhHHhhccCCcccCCCHHHh
Confidence 0 11234566777765444332111111122246778888773 4442 111112345678888876544433222234
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFG 303 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (356)
..+++|++|+++++ .++.... ..+.+|++|.+.++..++... . ...+++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N-~l~~lp~---~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSLPS---YGLENLKKLRARSTYNLKKLP--T-LEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTS-CCCCCCS---SSCTTCCEEECTTCTTCCCCC--C-TTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCC-CcCccCh---hhhccchHhhhccCCCcCcCC--C-chhCcChhhCcCCC
Confidence 56678888888887 3432111 124556666665554433211 1 23366777777754
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=2.6e-06 Score=72.42 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=50.9
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
.+++.+.+.+ .+....+..+...+++|+.+++.++ .+.......+..+++|+.+++.++ +...+-..+..|++|+
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhcc
Confidence 4455555544 3444444444445666666666652 222222223445666666666654 3333334455566666
Q ss_pred -EEecCCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 018439 272 -SLNLTWCVRITDVGVMAIAEGCSSLEFLSLFG 303 (356)
Q Consensus 272 -~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (356)
.+++.. .++..+- ..+.+|++|+.|++.+
T Consensus 277 ~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 277 GTLELPA--SVTAIEF-GAFMGCDNLRYVLATG 306 (329)
T ss_dssp EEEEECT--TCCEECT-TTTTTCTTEEEEEECS
T ss_pred EEEEEcc--cceEEch-hhhhCCccCCEEEeCC
Confidence 666654 2221111 1223466677777654
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.76 E-value=5.2e-06 Score=74.04 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=42.5
Q ss_pred cccccCCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEeccc
Q 018439 15 ETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLR 65 (356)
Q Consensus 15 ~~~~~~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l~ 65 (356)
.++...+|+|++.+||+||+.++++++++|||+|++++...+.+|+.+.+.
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 455555666999999999999999999999999999865448999987543
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=5.1e-06 Score=78.32 Aligned_cols=81 Identities=22% Similarity=0.154 Sum_probs=38.4
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCC
Q 018439 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270 (356)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 270 (356)
+++|++|+++++ .++ .++..+..+++|+.|+|+++ .+. .....+..+++|++|+|+++ .++.. ...++.+++|
T Consensus 246 l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~l-p~~~~~l~~L 318 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSCFQLKYFYFFDN-MVTTL-PWEFGNLCNL 318 (727)
T ss_dssp CCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGGTTCSEEECCSS-CCCCC-CSSTTSCTTC
T ss_pred CCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCCCCCCEEECCCC-CCCcc-ChhhhcCCCc
Confidence 555555555553 333 12222344556666666553 222 11223445556666666655 33311 1124555666
Q ss_pred cEEecCCC
Q 018439 271 VSLNLTWC 278 (356)
Q Consensus 271 ~~L~l~~~ 278 (356)
++|+|++|
T Consensus 319 ~~L~L~~N 326 (727)
T 4b8c_D 319 QFLGVEGN 326 (727)
T ss_dssp CCEECTTS
T ss_pred cEEeCCCC
Confidence 66666654
No 151
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.60 E-value=1.2e-05 Score=71.13 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=40.7
Q ss_pred cccccCCchH----HHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEecc
Q 018439 15 ETWSKETVPK----VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL 64 (356)
Q Consensus 15 ~~~~~~~~pe----il~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~l 64 (356)
.++...+|+| ++.+||+||+.+++.++++|||+|+.+ ..++.+|+.+-.
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~w~~~~~ 60 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV-TSDGMLWKKLIE 60 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH-HHHTTHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcChHHHHHHHH
Confidence 3444455558 999999999999999999999999987 467899998743
No 152
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.50 E-value=3.5e-05 Score=68.25 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=40.4
Q ss_pred ccccccCCchHHHHHHHhCCChhhhHHHHhccHHHHHHhccCCCcceEec
Q 018439 14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63 (356)
Q Consensus 14 ~~~~~~~~~peil~~If~~L~~~~~~~~~~v~~~w~~~~~~~~~l~~~l~ 63 (356)
..++...+|+|++.+||+||+.+++.++++|||+|+.+ +.++.+|+.+-
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~-~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL-AEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH-HTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh-cCchhHhhhhe
Confidence 44555455559999999999999999999999999987 46788888653
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.47 E-value=2.8e-05 Score=59.03 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=25.0
Q ss_pred cCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
.+++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|+.|+++++
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCC
Confidence 3444555555444 233222222344455555555543 222111 011222455555555554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.46 E-value=2.9e-05 Score=59.21 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=27.9
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
..+++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|+.|++.++
T Consensus 54 ~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS
T ss_pred cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeC-HHHhccccCCCEEEeCCC
Confidence 34455555555555 333222222344556666666553 232111 011223556666666665
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.35 E-value=6.1e-05 Score=57.39 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=42.8
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
++|+.|+++++ .++.. ....+..+++|+.|+++++ .+.......+..+++|++|+++++ .++......+..+++|+
T Consensus 33 ~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKL-EPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCC-Ccccc-CHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence 35555555552 23210 0112344566666666653 332211112345667777777776 34432223356677888
Q ss_pred EEecCCCC
Q 018439 272 SLNLTWCV 279 (356)
Q Consensus 272 ~L~l~~~~ 279 (356)
+|+++++.
T Consensus 109 ~L~L~~N~ 116 (174)
T 2r9u_A 109 HIYLYNNP 116 (174)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 88887753
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.34 E-value=7.1e-05 Score=56.78 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCc
Q 018439 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271 (356)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 271 (356)
++|+.|+++++ .++.. ....+..+++|++|+++++ .+.......+..+++|++|+++++ .++......+..+++|+
T Consensus 30 ~~l~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKL-EPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCC-cCCcc-ChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCC
Confidence 45666666553 33221 0112345666777777663 333222222346677777777777 44433333456677888
Q ss_pred EEecCCCC
Q 018439 272 SLNLTWCV 279 (356)
Q Consensus 272 ~L~l~~~~ 279 (356)
+|+++++.
T Consensus 106 ~L~L~~N~ 113 (170)
T 3g39_A 106 HIWLLNNP 113 (170)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 88888753
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=0.00093 Score=54.31 Aligned_cols=38 Identities=37% Similarity=0.496 Sum_probs=16.5
Q ss_pred HhCCCCcEEecCCCCCCCh-HHHHHHHhcCCCCcEEEcCC
Q 018439 189 DNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYA 227 (356)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~ 227 (356)
..+|+|+.|+++++ .++. ..+...+..+++|+.|++++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 34555555555552 3322 11222333445555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.25 E-value=0.0005 Score=55.92 Aligned_cols=84 Identities=27% Similarity=0.307 Sum_probs=43.1
Q ss_pred HhCCCccEEEeecCCccCH-HHHHHHHHhCCcCcEEeccCCCCCCHH-HHHHHHHhCCCCcEEecCCCCCCCh------H
Q 018439 137 STCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRCVKLTD------G 208 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~ 208 (356)
..+|+|+.|+++++ .++. ..+..++..+++|+.|+|++. .+.+. .+..+. .+ +|++|++.++ .+.. .
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchh
Confidence 45667777777666 3332 123333445677777777663 34331 122111 12 6777777663 3331 1
Q ss_pred HHHHHHhcCCCCcEEEc
Q 018439 209 GLQKILIKCSSLRSLNL 225 (356)
Q Consensus 209 ~~~~~~~~~~~L~~L~l 225 (356)
....++..+|+|+.|+-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 22344566777777664
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.95 E-value=0.00017 Score=61.62 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=15.9
Q ss_pred cCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCC
Q 018439 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGA 253 (356)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 253 (356)
.+++|+.|+|+++ .+.......+..+++|++|+|+++
T Consensus 54 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 54 GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred cccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555555542 232222223334445555555444
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.39 E-value=0.0012 Score=56.32 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=43.0
Q ss_pred HHhCCcCcEEeccCCCCCCHHHHHHHHHhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc
Q 018439 162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (356)
Q Consensus 162 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (356)
+..+++|++|+|++.+.+.... ...+..+++|+.|+++++ .++.. ....+..+++|+.|+|+++ .+.......+..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFV-APDAFHFTPRLSRLNLSFN-ALESLSWKTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEE-CTTGGGSCSCCCEEECCSS-CCSCCCSTTTCS
T ss_pred CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-cccee-CHHHhcCCcCCCEEeCCCC-ccceeCHHHccc
Confidence 3455667777776423443211 111234677777777773 44421 1223456777777777763 332111111112
Q ss_pred CCCCCEEecCCC
Q 018439 242 LAHLKFLDLCGA 253 (356)
Q Consensus 242 ~~~L~~L~l~~~ 253 (356)
+ +|+.|++.++
T Consensus 103 ~-~L~~l~l~~N 113 (347)
T 2ifg_A 103 L-SLQELVLSGN 113 (347)
T ss_dssp C-CCCEEECCSS
T ss_pred C-CceEEEeeCC
Confidence 2 2666766665
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.38 E-value=0.00014 Score=63.44 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=27.7
Q ss_pred ccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
..+++|+.+.+... +...+...+..|++|+.+.+... ++..+-. .+..| +|+.+.+.++
T Consensus 297 ~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~-aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 297 EGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFS-AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTT-SSSSS-CCCEEEECCS
T ss_pred hCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHH-hCCCC-CCCEEEEcCC
Confidence 34556666666532 33323334455666666666432 2111111 12235 6666666654
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.31 E-value=8.8e-05 Score=64.66 Aligned_cols=124 Identities=11% Similarity=0.111 Sum_probs=70.6
Q ss_pred HhCCCccEEEeecCC-ccCHHHHHHHHHhCCcCcEEeccCC-CCCCHHHHHHHHHhCCCCcEEecCCCCC-------CCh
Q 018439 137 STCPELKVFSIYWNV-RVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRCVK-------LTD 207 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~ 207 (356)
..|++|+.+.+.... .+....+. . .+|+.+.+... ..+... ....|++|+.+.+.+... +..
T Consensus 223 ~~~~~L~~l~l~~~l~~I~~~aF~----~-~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 223 LKTSQLKTIEIPENVSTIGQEAFR----E-SGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp TTCTTCCCEECCTTCCEECTTTTT----T-CCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred hCCCCCCEEecCCCccCccccccc----c-CCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCcccEECH
Confidence 345666666665321 12222111 1 45666666431 111121 123578888888865311 222
Q ss_pred HHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC
Q 018439 208 GGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278 (356)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (356)
..+.+|++|+.+.+.+ .+.......+..+++|+.+.+... +...+...+..| +|+.+.+.++
T Consensus 294 ----~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 294 ----YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ----TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred ----HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 2355688999999875 232222234557899999999764 444344556778 9999999875
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.38 E-value=0.048 Score=47.26 Aligned_cols=103 Identities=17% Similarity=0.313 Sum_probs=61.3
Q ss_pred hCCCCcEEecCCC-CCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCC
Q 018439 190 NYQELESLNLTRC-VKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (356)
Q Consensus 190 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (356)
.+..|+.+.+... ..+... .+.+|+.|+.+.+.. .+.......+..+.+|+.+.+... ++.-+-..+..|.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ecccccEEecccccceecCc----ccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 4778888887552 112221 244578888888864 222212223456788888888653 3333334567788
Q ss_pred CCcEEecCCC-CCCCHHHHHHHHhcCCCCCEEEecCC
Q 018439 269 NLVSLNLTWC-VRITDVGVMAIAEGCSSLEFLSLFGI 304 (356)
Q Consensus 269 ~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~ 304 (356)
+|+++.|... ..+.+.+ +.+|++|+.+++.+.
T Consensus 335 ~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC
T ss_pred CCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc
Confidence 8888888542 2344332 345888888888763
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.00 E-value=0.2 Score=43.28 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=72.6
Q ss_pred HhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC-CCCCHHHHHHHHhc
Q 018439 214 LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC-VRITDVGVMAIAEG 292 (356)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~l~~~ 292 (356)
+.+|..|+.+.+.+.. .......+..++.|+.+.+... +...+-..+..|.+|+.+.|... ..+.+. .+.+
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~ 332 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEGITQILDD----AFAG 332 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTT
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCcccEehHh----HhhC
Confidence 4568999999997521 1111223456789999999753 43333345778999999999652 233433 2345
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCCcceEeeec
Q 018439 293 CSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFPHLMCFKVH 355 (356)
Q Consensus 293 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~L~~l~l~ 355 (356)
|.+|+++.+.. .++.-+-.+ ...|. +|+.+++.+.. . .... ...+.+|+.+.+.
T Consensus 333 C~~L~~i~ip~--sv~~I~~~a-F~~C~-~L~~i~~~~~~--~--~~~~-~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESA-FSNCT-ALNNIEYSGSR--S--QWNA-ISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGG-GTTCT-TCCEEEESSCH--H--HHHT-CBCCCCC------
T ss_pred CCCCCEEEECc--ccCEEhHhH-hhCCC-CCCEEEECCce--e--ehhh-hhccCCCCEEEeC
Confidence 89999999965 233222111 23565 99999998742 1 1222 2346677776653
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.46 E-value=0.23 Score=42.60 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=34.8
Q ss_pred hcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCC--CCCCHHHHHHHHhc
Q 018439 215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC--VRITDVGVMAIAEG 292 (356)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~l~~~ 292 (356)
..+..|+.+.+... +.......+..+.+|+.+.+... +...+...+..|.+|+.+.+.++ ..+.+. .+..
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~ 308 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMD 308 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTT
T ss_pred cCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhh----hhcC
Confidence 34566666666431 11111112234455666655432 22222233445566666665432 122222 1223
Q ss_pred CCCCCEEEec
Q 018439 293 CSSLEFLSLF 302 (356)
Q Consensus 293 ~~~L~~L~l~ 302 (356)
|.+|+.+.+.
T Consensus 309 c~~L~~i~lp 318 (379)
T 4h09_A 309 CVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEEcC
Confidence 5566666664
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.02 E-value=0.31 Score=41.75 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=73.7
Q ss_pred hCCcCcEEeccCC-CCCCHHHHHHHHHhCCCCcEEecCCC-CCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhcc
Q 018439 164 NCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRC-VKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL 241 (356)
Q Consensus 164 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 241 (356)
.+.+|+.+.+... ..+.... ...+..|+.+.+... ..+... .+.++.+|+.+.+... +.......+..
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~--i~~i~~~aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAK--VKTVPYLLCSG 284 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCC--CSEECTTTTTT
T ss_pred cccccceeeeccceeEEcccc----ccCCccceEEEcCCCccEeCcc----ccceeehhcccccccc--ceecccccccc
Confidence 4677888877542 1111111 234788888888652 122221 2456888899888652 22222223456
Q ss_pred CCCCCEEecCCCCCCchHHHHHhhcCCCCcEEecCC-CCCCCHHHHHHHHhcCCCCCEEEecC
Q 018439 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTW-CVRITDVGVMAIAEGCSSLEFLSLFG 303 (356)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (356)
+++|+.+.+.++ .+...+-..+.+|.+|+.+.+.. ...+.+.+ +.+|.+|+++.+..
T Consensus 285 c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCT
T ss_pred cccccccccccc-ccceehhhhhcCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECC
Confidence 789999998765 34333334567788999999864 22333322 33588899888864
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=75.48 E-value=0.45 Score=41.03 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=74.9
Q ss_pred hCCCCcEEecCCCC-CCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCC
Q 018439 190 NYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK 268 (356)
Q Consensus 190 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 268 (356)
.+..|+.+.+.... .+... .+..+..++.+..... .+.+ .....+.+|+.+.+... +...+-..+..|.
T Consensus 251 ~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~-~i~~---~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 251 GCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSV-IVPE---KTFYGCSSLTEVKLLDS--VKFIGEEAFESCT 320 (394)
T ss_dssp TCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSS-EECT---TTTTTCTTCCEEEECTT--CCEECTTTTTTCT
T ss_pred ccccceeEEcCCCcceeecc----ccccccccceeccCce-eecc---ccccccccccccccccc--cceechhhhcCCC
Confidence 46788888876521 11111 2345677777776542 1211 12345678888888653 3333334566788
Q ss_pred CCcEEecCCC-CCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHccccccEEecCCCCCccHHHHHHHHhhCC
Q 018439 269 NLVSLNLTWC-VRITDVGVMAIAEGCSSLEFLSLFGIVGVTDKCLEVLSRFCSNTLTTLDVNGCVGIKQRSRDELLQLFP 347 (356)
Q Consensus 269 ~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p 347 (356)
+|+.+++... ..+.+. .+.+|.+|+.+.+... ++..+-.+ ...|. +|+.+.+... +.. +......|+
T Consensus 321 ~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~a-F~~C~-~L~~i~lp~~--~~~--~~~~F~~c~ 388 (394)
T 4fs7_A 321 SLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPLS--LRKIGANA-FQGCI-NLKKVELPKR--LEQ--YRYDFEDTT 388 (394)
T ss_dssp TCCEECCCTTCCEECTT----TTTTCTTCCEECCCTT--CCEECTTT-BTTCT-TCCEEEEEGG--GGG--GGGGBCTTC
T ss_pred CCCEEEeCCcccEEhHH----hccCCCCCCEEEECcc--ccEehHHH-hhCCC-CCCEEEECCC--CEE--hhheecCCC
Confidence 8888888542 223322 2334788888888642 33211111 23465 8888888643 211 111223466
Q ss_pred cceEe
Q 018439 348 HLMCF 352 (356)
Q Consensus 348 ~L~~l 352 (356)
+|+.+
T Consensus 389 ~L~~I 393 (394)
T 4fs7_A 389 KFKWI 393 (394)
T ss_dssp EEEEE
T ss_pred CCcEE
Confidence 66654
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.45 E-value=2.1 Score=30.13 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=17.0
Q ss_pred CCCEEecCCCCCCchHHHHHhhcCCCCcEEecCCCC
Q 018439 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV 279 (356)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (356)
+|++|+|+++ .++......+..+++|+.|+|+++.
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 3332222334445556666665543
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=69.53 E-value=1.2 Score=38.38 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=63.8
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCChHHHHHhccCCCCCEEecCCCCCCchHHHHHhhcCCC
Q 018439 190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269 (356)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 269 (356)
.++.++.+.... ..+... .+..+.+|+.+.+.+. +.......+..+.+|+.+++... +...+-..+.+|.+
T Consensus 274 ~~~~l~~~~~~~-~~i~~~----~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 274 NCSGLKKVIYGS-VIVPEK----TFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTS 344 (394)
T ss_dssp TCTTCCEEEECS-SEECTT----TTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTT
T ss_pred cccccceeccCc-eeeccc----cccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCC
Confidence 467777776654 233322 2456889999998652 22222223557889999999753 44333456778899
Q ss_pred CcEEecCCC-CCCCHHHHHHHHhcCCCCCEEEecC
Q 018439 270 LVSLNLTWC-VRITDVGVMAIAEGCSSLEFLSLFG 303 (356)
Q Consensus 270 L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~ 303 (356)
|+.+.+... ..+.+. .+.+|++|+++.+..
T Consensus 345 L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 345 LSNINFPLSLRKIGAN----AFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTTCCEECTT----TBTTCTTCCEEEEEG
T ss_pred CCEEEECccccEehHH----HhhCCCCCCEEEECC
Confidence 999998653 223332 234589999999975
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=54.45 E-value=6.2 Score=27.66 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=7.0
Q ss_pred cCCCCCEEecCCC
Q 018439 241 LLAHLKFLDLCGA 253 (356)
Q Consensus 241 ~~~~L~~L~l~~~ 253 (356)
.+++|+.|+|.++
T Consensus 53 ~l~~L~~L~L~~N 65 (130)
T 3rfe_A 53 ALPALRTAHLGAN 65 (130)
T ss_dssp GCTTCCEEECCSS
T ss_pred hccccCEEEecCC
Confidence 4455555555554
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.24 E-value=21 Score=23.60 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=5.8
Q ss_pred hhcCCCCcEEecC
Q 018439 264 IAKCKNLVSLNLT 276 (356)
Q Consensus 264 l~~~~~L~~L~l~ 276 (356)
+..|.+|+.+.+.
T Consensus 39 F~~C~~L~~i~~~ 51 (100)
T 2lz0_A 39 FSGCTALEKLILT 51 (100)
T ss_dssp STTCTTCCCEEEC
T ss_pred HhccCCccEEEEc
Confidence 3344444444443
Done!