BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018442
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 7/276 (2%)
Query: 2 SLGYAEKLSYREDVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGI 61
S+ YA LS D G G+ EIFDPP L++K+ ELA ++ +S +V TGAGIST+ GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHL 121
PDFRGP GVWT++ G P+ F+ A P+ THMALV+LE+ G+L+F++SQNVD LH+
Sbjct: 62 PDFRGPHGVWTMEERGL-APKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHV 120
Query: 122 RSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVK------CGSR 175
RSG PR+KLAELHGN F E C C +Y+RD + T+G+K T R C+ K C
Sbjct: 121 RSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGE 180
Query: 176 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 235
L+DT+LDWED+LP ++ A+E R AD+ + LGTSLQI P+ NLPL + R GG++VIVN
Sbjct: 181 LRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240
Query: 236 LQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPY 271
LQ T D+ A L +H VD+V+ +M+HL L IP +
Sbjct: 241 LQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAW 276
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 280 bits (716), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 7/276 (2%)
Query: 2 SLGYAEKLSYREDVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGI 61
S+ YA LS D G G+ EIFDPP L++K+ ELA ++ +S +V TGAGIST+ GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHL 121
PDFRGP GVWT++ G P+ F+ A P+ THMALV+LE+ G+L+F++SQNVD LH+
Sbjct: 62 PDFRGPHGVWTMEERGL-APKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHV 120
Query: 122 RSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVK------CGSR 175
RSG PR+KLAELHGN F E C C +Y+RD + T+G+K T R C+ K C
Sbjct: 121 RSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGE 180
Query: 176 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 235
L+DT+LDWED+LP ++ A+E R AD+ + LGTSLQI P+ NLPL + R GG++VIVN
Sbjct: 181 LRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240
Query: 236 LQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPY 271
LQ T D+ A L +H VD+V+ +M HL L IP +
Sbjct: 241 LQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAW 276
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 129/246 (52%), Gaps = 20/246 (8%)
Query: 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREG--------------- 77
K+ E ++ +S+ V TGAGIST GIPDFRGP G++ +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 78 KGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNS 137
+ E P +A P++ H+ L +LE+ G+++ VI+QN+D LH R+G +K+ ELHGN
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNV 119
Query: 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEE 197
C C +Y + I+ + P C D C S ++ ++ + + LP + A
Sbjct: 120 EEYYCVRCEKKYTVEDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIG 176
Query: 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 257
A +++ LG+SL + PA LPL ++R GGK+VIVNL +TP D A+L + V +
Sbjct: 177 LSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFA 236
Query: 258 AGVMRH 263
VM
Sbjct: 237 RRVMEE 242
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 20/246 (8%)
Query: 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREG--------------- 77
K+ E ++ +S+ V TGAGIST GIPDFRGP G++ +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 78 KGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNS 137
+ E P +A P++ H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL+GN
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELYGNV 119
Query: 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEE 197
C C +Y + I+ + P C D C S ++ ++ + + LP + A
Sbjct: 120 EEYYCVRCEKKYTVEDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIG 176
Query: 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 257
A +++ LG+SL + PA LPL ++R GGK+VIVNL +TP D A+L + V +
Sbjct: 177 LSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFA 236
Query: 258 AGVMRH 263
VM
Sbjct: 237 RRVMEE 242
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 20/246 (8%)
Query: 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREG--------------- 77
K+ E ++ +S+ V TGAGIST GIPDFRGP G++ +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 78 KGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNS 137
+ E P +A P++ H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL GN
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELAGNV 119
Query: 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEE 197
C C +Y + I+ + P C D C S ++ ++ + + LP + A
Sbjct: 120 EEYYCVRCEKKYTVEDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIG 176
Query: 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 257
A +++ LG+SL + PA LPL ++R GGK+VIVNL +TP D A+L + V +
Sbjct: 177 LSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFA 236
Query: 258 AGVMRH 263
VM
Sbjct: 237 RRVMEE 242
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 21/229 (9%)
Query: 30 LQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWT------------LQREG 77
++ +I + A ++ KSKH V FTGAGIS GIP FRG G+W +R
Sbjct: 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNP 60
Query: 78 KGVPEASLPFDR---AMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH 134
+ E S+ A P+ H A+ ELE+ GI+K VI+QN+D LH R+G R + ELH
Sbjct: 61 RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELH 118
Query: 135 GNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS-RLKDTVLDWEDALPPVEMN 193
G+ + C C Y +E + P RC KCGS +K V+ + + LP +
Sbjct: 119 GSMDKLDCLDCHETYDWSEFVEDFNKGEIP-RCR--KCGSYYVKPRVVLFGEPLPQRTLF 175
Query: 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD 242
A E + D + +G+SL + PA LP + + G K++IVN + T D
Sbjct: 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD 224
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFD------------ 88
I +SK+LVA TGAG+S GIP FRG G+W R + + D
Sbjct: 20 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 79
Query: 89 ----RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
A P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C S
Sbjct: 80 EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTS 137
Query: 145 CGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204
C FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV
Sbjct: 138 CN----NSFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADV 191
Query: 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264
++ GTS + PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 192 IIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 251
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFD------------ 88
I +SK+LVA TGAG+S GIP FRG G+W R + + D
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 89 ----RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
A P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C S
Sbjct: 69 EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTS 126
Query: 145 CGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204
C FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV
Sbjct: 127 CN----NSFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADV 180
Query: 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264
++ GTS + PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 181 IIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 117/240 (48%), Gaps = 24/240 (10%)
Query: 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFD------------ 88
I +SK+LVA TGAG+S GIP FRG G+W R + + D
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 89 ----RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
A P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C S
Sbjct: 69 EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAG--SRNVIHLHGSLRVVRCTS 126
Query: 145 CGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204
C FE+E+ +C KCGS L+ V+ + LPP ++ A ADV
Sbjct: 127 CN----NSFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMREVERADV 180
Query: 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264
++ GTS + PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 181 IIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFD------------ 88
I +SK+LVA TGAG++ GIP FRG G+W R + + D
Sbjct: 9 IAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 89 ----RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
A P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C S
Sbjct: 69 EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTS 126
Query: 145 CGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204
C FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV
Sbjct: 127 CN----NSFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADV 180
Query: 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264
++ GTS + PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 181 IIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 117/240 (48%), Gaps = 24/240 (10%)
Query: 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFD------------ 88
I +SK+LVA TGAG+S GIP FRG G+W R + + D
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 89 ----RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
A P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C S
Sbjct: 69 EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTS 126
Query: 145 CGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204
C FE+E+ +C KCGS L+ V+ + LPP ++ A ADV
Sbjct: 127 CN----NSFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADV 180
Query: 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264
++ GTS + PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 181 IIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFD------------ 88
I +SK+LVA TGAG+S GIP FRG G+W R + + D
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 89 ----RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
A P+ + A ELE+ G+LK +I+QNVD LH R+G + LHG+ C S
Sbjct: 69 EKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTS 126
Query: 145 CGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204
C FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV
Sbjct: 127 CN----NSFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADV 180
Query: 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264
++ GTS + PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 181 IIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 109/240 (45%), Gaps = 40/240 (16%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKG-------------VWTLQREGKGV 80
+ ELA +IKK KH+VA TG+G S IP FRG +W +
Sbjct: 10 LEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWK----Y 65
Query: 81 PEASLPFDRAMPSIT-------HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL 133
PE R + S H+AL LE G LK V++QNVD LH SG K+ L
Sbjct: 66 PEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISL 123
Query: 134 HGNSFREICPSCGVEYMRDFEIETIGMKKT-------PRRCSDVKCGSRLKDTVLDWEDA 186
HGN F +C +C + ++ I ++KT P C CG K ++ + +
Sbjct: 124 HGNVFEAVCCTCN----KIVKLNKIXLQKTSHFXHQLPPECP---CGGIFKPNIILFGEV 176
Query: 187 LPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 246
+ + AEE D++L +GTS ++ A NL + + KIV +N+ +T K S
Sbjct: 177 VSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKXS 236
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKG-------------VWTLQREGKGV 80
+ ELA +IKK KH+VA TG+G S IP FRG +W +
Sbjct: 35 LEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWK----Y 90
Query: 81 PEASLPFDRAMPS-------ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL 133
PE R + S H+AL LE G LK V++QNVD LH SG K+ L
Sbjct: 91 PEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISL 148
Query: 134 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCS----DVKCGSRLKDTVLDWEDALPP 189
HGN F +C +C + ++ I ++KT + CG K ++ + + +
Sbjct: 149 HGNVFEAVCCTCN----KIVKLNKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVSS 204
Query: 190 VEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 246
+ AEE D++L +GTS ++ A NL + + KIV +N+ +T K S
Sbjct: 205 DLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMS 261
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 38/260 (14%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW-TLQREGKGVPEAS-------- 84
+A+ K+KH+V +GAG+S G+P FRG G W Q + P A
Sbjct: 11 MADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVW 70
Query: 85 --LPFDRAM-----PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAEL 133
+ R + P+ H A+ E E K G VI+QN+D LH ++G + L E+
Sbjct: 71 EFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEI 128
Query: 134 HGNSFREICPSCGV--EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLK 177
HG+ F+ C SCGV E + + K P RC + CG L+
Sbjct: 129 HGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLR 188
Query: 178 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 237
V+ + + L P + + D+ L +GTS + PA + G + N +
Sbjct: 189 PHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTE 248
Query: 238 QTPKDKKASLVVHAPVDKVI 257
TP + P +
Sbjct: 249 TTPATNRFRFHFQGPCGTTL 268
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 38/260 (14%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW-TLQREGKGVPEAS-------- 84
+A+ K+KH+V +GAG+S G+P FRG G W Q + P A
Sbjct: 13 MADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVW 72
Query: 85 --LPFDRAM-----PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAEL 133
+ R + P+ H A+ E E K G VI+QN+D LH ++G + L E+
Sbjct: 73 EFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEI 130
Query: 134 HGNSFREICPSCGV--EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLK 177
HG+ F+ C SCGV E + + K P RC + CG L+
Sbjct: 131 HGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLR 190
Query: 178 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 237
V+ + + L P + + D+ L +GTS + PA + G + N +
Sbjct: 191 PHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTE 250
Query: 238 QTPKDKKASLVVHAPVDKVI 257
TP + P +
Sbjct: 251 TTPATNRFRFHFQGPCGTTL 270
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 104/259 (40%), Gaps = 38/259 (14%)
Query: 35 AELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW-TLQREGKGVPEAS--------- 84
A+ K+KH+V +GAG+S G+P FRG G W Q + P A
Sbjct: 10 ADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWE 69
Query: 85 -LPFDRAM-----PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELH 134
+ R + P+ H A+ E E K G VI+QN+D LH ++G + L E+H
Sbjct: 70 FYHYRREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIH 127
Query: 135 GNSFREICPSCGV--EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKD 178
G+ F+ C SCGV E + + K P RC + CG L+
Sbjct: 128 GSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRP 187
Query: 179 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 238
V+ + + L P + + D+ L +GTS + PA + G + N +
Sbjct: 188 HVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAXFAPQVAARGVPVAEFNTET 247
Query: 239 TPKDKKASLVVHAPVDKVI 257
TP + P +
Sbjct: 248 TPATNRFRFHFQGPCGTTL 266
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 38/260 (14%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW-TLQREGKGVPEAS-------- 84
+A+ K+KH+V +GAG+S G+P FRG G W Q + P A
Sbjct: 9 MADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVW 68
Query: 85 --LPFDRAM-----PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAEL 133
+ R + P+ H A+ E E K G VI+QN+D LH ++G + L E+
Sbjct: 69 EFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEI 126
Query: 134 HGNSFREICPSCGV--EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLK 177
HG+ F+ C SCGV E + + K P RC + CG L+
Sbjct: 127 HGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLR 186
Query: 178 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 237
V+ + + L P + + D+ L +GTS + PA + G + N +
Sbjct: 187 PHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTE 246
Query: 238 QTPKDKKASLVVHAPVDKVI 257
TP + P +
Sbjct: 247 TTPATNRFRFHFQGPCGTTL 266
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 38/260 (14%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW-TLQREGKGVPEAS-------- 84
+A+ K+KH+V +GAG+S G+P FRG G W Q + P A
Sbjct: 5 MADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVW 64
Query: 85 --LPFDRAM-----PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAEL 133
+ R + P+ H A+ E E K G VI+QN+D LH ++G + L E+
Sbjct: 65 EFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEI 122
Query: 134 HGNSFREICPSCGV--EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLK 177
HG+ F+ C SCGV E + + K P RC + CG L+
Sbjct: 123 HGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLR 182
Query: 178 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 237
V+ + + L P + + D+ L +GTS + PA + G + N +
Sbjct: 183 PHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTE 242
Query: 238 QTPKDKKASLVVHAPVDKVI 257
TP + P +
Sbjct: 243 TTPATNRFRFHFQGPCGTTL 262
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 26/202 (12%)
Query: 42 KKSKHLVAFTGAGISTSCGIPDFRGPK-GVW-TLQREGKGVPEASL----------PF-- 87
++ + ++ GAGISTS GIPDFR P G++ L++ PEA PF
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 88 -------DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFRE 140
+ P+I H + L+ G+L +QN+D+L +G+ +E L E HG +
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 141 IC--PSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEEN 198
C SC EY + E I + TP +C D C S +K ++ + ++LP + + +
Sbjct: 161 HCVSASCRHEYPLSWMKEKIFSEVTP-KCED--CQSLVKPDIVFFGESLPARFFSCMQSD 217
Query: 199 CRMADVVLCLGTSLQITPACNL 220
D++L +GTSLQ+ P +L
Sbjct: 218 FLKVDLLLVMGTSLQVQPFASL 239
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 26/202 (12%)
Query: 42 KKSKHLVAFTGAGISTSCGIPDFRGPK-GVW-TLQREGKGVPEASL----------PF-- 87
++ + ++ GAGISTS GIPDFR P G++ L++ PEA PF
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 88 -------DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFRE 140
+ P+I H + L+ G+L +QN+D+L +G+ +E L E HG +
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 141 IC--PSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEEN 198
C SC EY + E I + TP +C D C S +K ++ + ++LP + + +
Sbjct: 161 HCVSASCRHEYPLSWMKEKIFSEVTP-KCED--CQSLVKPDIVFFGESLPARFFSCMQSD 217
Query: 199 CRMADVVLCLGTSLQITPACNL 220
D++L +GTSLQ+ P +L
Sbjct: 218 FLKVDLLLVMGTSLQVQPFASL 239
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 32 QKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGP-KGVWT-LQREGKGVPEA--SLPF 87
Q +AEL + + + +V GAGIST GIPDFR P G+++ LQ+ PEA LPF
Sbjct: 5 QDVAEL-IRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPF 63
Query: 88 -----------------DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKL 130
P++TH L L G+L + +QN+D L SGIP KL
Sbjct: 64 FFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKL 123
Query: 131 AELHGNSFREICPSCGVEYMRDFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDAL 187
E HG C C R F E I M RC C +K ++ + + L
Sbjct: 124 VEAHGTFASATCTVC----QRPFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPL 177
Query: 188 PPVEMNPAEENCRMADVVLCLGTSLQITPACNL 220
P + + MAD++L LGTSL++ P +L
Sbjct: 178 PQRFLLHV-VDFPMADLLLILGTSLEVEPFASL 209
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 32 QKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGP-KGVWT-LQREGKGVPEA--SLPF 87
Q +AEL + + + +V GAGIST GIPDFR P G+++ LQ+ PEA LPF
Sbjct: 12 QDVAEL-IRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPF 70
Query: 88 -----------------DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKL 130
P++TH L L G+L + +QN+D L SGIP KL
Sbjct: 71 FFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKL 130
Query: 131 AELHGNSFREICPSCGVEYMRDFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDAL 187
E HG C C R F E I M RC C +K ++ + + L
Sbjct: 131 VEAHGTFASATCTVC----QRPFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPL 184
Query: 188 PPVEMNPAEENCRMADVVLCLGTSLQITPACNL 220
P + + MAD++L LGTSL++ P +L
Sbjct: 185 PQRFLLHV-VDFPMADLLLILGTSLEVEPFASL 216
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 32 QKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGP-KGVWT-LQREGKGVPEA--SLPF 87
Q +AEL + + + +V GAGIST GIPDFR P G+++ LQ+ PEA LPF
Sbjct: 11 QDVAEL-IRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPF 69
Query: 88 -----------------DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKL 130
P++TH L L G+L + +QN+D L SGIP KL
Sbjct: 70 FFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKL 129
Query: 131 AELHGNSFREICPSCGVEYMRDFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDAL 187
E HG C C R F E I M RC C +K ++ + + L
Sbjct: 130 VEAHGTFASATCTVC----QRPFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPL 183
Query: 188 PPVEMNPAEENCRMADVVLCLGTSLQITPACNL 220
P + + MAD++L LGTSL++ P +L
Sbjct: 184 PQRFLLHV-VDFPMADLLLILGTSLEVEPFASL 215
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 114/259 (44%), Gaps = 45/259 (17%)
Query: 47 LVAFTGAGISTSCGIPDFRGP-KGVW-TLQREGKGVPEA----------SLPF------- 87
++ GAGISTSCGIPDFR P G++ L R PEA LPF
Sbjct: 30 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 89
Query: 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC 145
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C C
Sbjct: 90 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 149
Query: 146 GVEYMRDFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE--- 196
G Y + K +C DV CG +K ++ D D+ +N +E
Sbjct: 150 GKVYPPQVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLR 207
Query: 197 ENCRMAD------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS---- 246
E + +V+ +GTSL + P +LP + R K V+ NL +T D KA+
Sbjct: 208 EKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPT 265
Query: 247 -LVVHAPVDKVIAGVMRHL 264
L+VH D+ ++ L
Sbjct: 266 DLIVHQYSDEFAEQLVEEL 284
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 114/259 (44%), Gaps = 45/259 (17%)
Query: 47 LVAFTGAGISTSCGIPDFRGP-KGVW-TLQREGKGVPEA----------SLPF------- 87
++ GAGISTSCGIPDFR P G++ L R PEA LPF
Sbjct: 33 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 92
Query: 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC 145
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C C
Sbjct: 93 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 152
Query: 146 GVEYMRDFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE--- 196
G Y + K +C DV CG +K ++ D D+ +N +E
Sbjct: 153 GKVYPPQVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLR 210
Query: 197 ENCRMAD------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS---- 246
E + +V+ +GTSL + P +LP + R K V+ NL +T D KA+
Sbjct: 211 EKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPT 268
Query: 247 -LVVHAPVDKVIAGVMRHL 264
L+VH D+ ++ L
Sbjct: 269 DLIVHQYSDEFAEQLVEEL 287
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 118/269 (43%), Gaps = 46/269 (17%)
Query: 47 LVAFTGAGISTSCGIPDFRGP-KGVW-TLQREGKGVPEA----------SLPF------- 87
++ GAGISTSCGIPDFR P G++ L R PEA LPF
Sbjct: 31 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 90
Query: 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC 145
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C C
Sbjct: 91 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 150
Query: 146 GVEYMRDFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE--- 196
G Y + K +C DV CG +K ++ D D+ +N +E
Sbjct: 151 GKVYPPQVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLR 208
Query: 197 ENCRMAD------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS---- 246
E + +V+ +GTSL + P +LP + R K V+ NL +T D KA+
Sbjct: 209 EKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPT 266
Query: 247 -LVVHAPVDKVIAGVMRHLNLWIPPYVRV 274
L+VH D+ ++ L W + ++
Sbjct: 267 DLIVHQYSDEFAEQLVEELG-WQEDFEKI 294
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 39/235 (16%)
Query: 47 LVAFTGAGISTSCGIPDFRGPKGVWTLQR-EGKGVPEASLPFDR---------------- 89
++ TGAGIS GI FR G+W R E PE FDR
Sbjct: 4 VLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEG---FDRDPELVQAFYNARRRQL 60
Query: 90 ----AMPSITHMALVELEKA-GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS 144
P+ H+AL +L+ A G +++QN+D+LH R+G + +HG + C
Sbjct: 61 QQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQ 118
Query: 145 CG--VEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMA 202
G +++ D E +C + + L+ V+ W + P+ M+ MA
Sbjct: 119 SGQVLDWTGDVTPED--------KCHCCQFPAPLRPHVV-WFGEM-PLGMDEIYMALSMA 168
Query: 203 DVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 257
D+ + +GTS + PA ++ G V +NL+ + + + + P +V+
Sbjct: 169 DIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVV 223
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 109/257 (42%), Gaps = 41/257 (15%)
Query: 47 LVAFTGAGISTSCGIPDFRGP-KGVW-TLQREGKGVPEA----------SLPF------- 87
++ GAGISTSCGIPDFR P G++ L R PEA LPF
Sbjct: 23 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82
Query: 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC 145
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C C
Sbjct: 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 142
Query: 146 GVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---EN 198
G Y + CG +K ++ D D+ +N +E E
Sbjct: 143 GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREK 202
Query: 199 CRMAD------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----L 247
+ +V+ +GTSL + P +LP + R K V+ NL +T D KA+ L
Sbjct: 203 ITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDL 260
Query: 248 VVHAPVDKVIAGVMRHL 264
+VH D+ ++ L
Sbjct: 261 IVHQYSDEFAEQLVEEL 277
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 114/259 (44%), Gaps = 45/259 (17%)
Query: 47 LVAFTGAGISTSCGIPDFRGP-KGVW-TLQREGKGVPEA----------SLPF------- 87
++ GAGISTSCGIPDFR P G++ L R PEA LPF
Sbjct: 41 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 100
Query: 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC 145
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C C
Sbjct: 101 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 160
Query: 146 GVEYMRDFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE--- 196
G Y + K +C DV CG +K ++ D D+ +N +E
Sbjct: 161 GKVYPPQVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLR 218
Query: 197 ENCRMAD------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS---- 246
E + +V+ +GTSL + P +LP + R K V+ NL +T D KA+
Sbjct: 219 EKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPT 276
Query: 247 -LVVHAPVDKVIAGVMRHL 264
L+VH D+ ++ L
Sbjct: 277 DLIVHQYSDEFAEQLVEEL 295
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 113/259 (43%), Gaps = 45/259 (17%)
Query: 47 LVAFTGAGISTSCGIPDFRGP-KGVW-TLQREGKGVPEA----------SLPF------- 87
++ GAGISTSCGIPDFR P G++ L R PEA LPF
Sbjct: 41 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 100
Query: 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC 145
PS H L + +LK V +QN D+L ++G+ + + E HG+ C C
Sbjct: 101 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGC 160
Query: 146 GVEYMRDFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE--- 196
G Y + K +C DV CG +K ++ D D+ +N +E
Sbjct: 161 GKVYPPQVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLR 218
Query: 197 ENCRMAD------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS---- 246
E + +V+ +GTSL + P +LP + R K V+ NL +T D KA+
Sbjct: 219 EKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPT 276
Query: 247 -LVVHAPVDKVIAGVMRHL 264
L+VH D+ ++ L
Sbjct: 277 DLIVHQYSDEFAEQLVEEL 295
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 60/253 (23%)
Query: 20 MSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWT-LQREGK 78
+S F H +Q+ + ++ ++ TGAG+STS GIPDFR +G ++ ++ G
Sbjct: 168 LSNFFTIDHFIQK--------LHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGL 219
Query: 79 GVPEASLPFDRAM--PSI-----------------THMALVELEKAGILKFVISQNVDSL 119
P+ ++ M PS+ H + L+ G L +QN+D+L
Sbjct: 220 DDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNL 279
Query: 120 HLRSGIPREKLAELHG--------------------NSFREI----CPSCGV---EYMRD 152
+GI +KL + HG N R + CP C EY +
Sbjct: 280 ESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPE 339
Query: 153 FEIETIGMKKTPRRCSD-----VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLC 207
+G+ + S+ + LK + + +ALP E+ D+++C
Sbjct: 340 GYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLIC 399
Query: 208 LGTSLQITPACNL 220
+GTSL++ P +
Sbjct: 400 IGTSLKVAPVSEI 412
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 30/214 (14%)
Query: 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWT-LQREGKGVPEASLPFD---- 88
I + ++++ K ++ TGAG+S SCGIPDFR G++ L + +P+ FD
Sbjct: 6 IEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYF 65
Query: 89 -----------------RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLA 131
+ PS+ H + +K G L +QN+D+L +GI +++
Sbjct: 66 RKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGI--QRII 123
Query: 132 ELHGNSFREICPSCGVEYMRDFEI--ETIGMKKTPR--RCSDVKCGSRLKDTVLDWEDAL 187
+ HG+ C C +Y D E I + PR RC + + +K ++ + + L
Sbjct: 124 QCHGSFATASCLIC--KYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKPEIVFFGENL 181
Query: 188 PPVEMNPAEENCRMADVVLCLGTSLQITPACNLP 221
P + + D+++ +G+SL++ P +P
Sbjct: 182 PEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIP 215
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 100/250 (40%), Gaps = 60/250 (24%)
Query: 20 MSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWT-LQREGK 78
+S F H +Q+ + ++ ++ TGAG+STS GIPDFR +G ++ ++ G
Sbjct: 30 LSNFFTIDHFIQK--------LHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGL 81
Query: 79 GVPEASLPFD-------------------RAMPSITHMALVELEKAGILKFVISQNVDSL 119
P+ ++ + S H + L+ G L +QN+D+L
Sbjct: 82 DDPQDVFNYNIFXHDPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNL 141
Query: 120 HLRSGIPREKLAELHG--------------------NSFREI----CPSCGV---EYMRD 152
+GI +KL + HG N R + CP C EY +
Sbjct: 142 ESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPE 201
Query: 153 FEIETIGMKKTPRRCSD-----VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLC 207
+G+ + S+ + LK + + +ALP E+ D+++C
Sbjct: 202 GYNNKVGVAASQGSXSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLIC 261
Query: 208 LGTSLQITPA 217
+GTSL++ P
Sbjct: 262 IGTSLKVAPV 271
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 81 PEASLPFDRAMPS-----ITHMALVELEKAGILKF--VISQNVDSLHLRSGIPREK---- 129
P A PF +P+ T+ ALVE+ KAG + F V++ N+D G+P+E
Sbjct: 29 PTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEY---VGLPKEHPESY 85
Query: 130 LAELHGNSFREI 141
+ +H N F +
Sbjct: 86 YSFMHRNFFDHV 97
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 81 PEASLPFDRAMPS-----ITHMALVELEKAGILKF--VISQNVDSLHLRSGIPREK---- 129
P A PF +P+ T+ ALVE+ KAG + F V++ N+D G+P+E
Sbjct: 29 PTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEY---VGLPKEHPESY 85
Query: 130 LAELHGNSFREI 141
+ +H N F +
Sbjct: 86 YSFMHRNFFDHV 97
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 171 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQ 213
K G L++ +L EDAL P NP EE CR CLG SL+
Sbjct: 294 KLGISLEEMLLVTEDALHPEPYNP-EEICR------CLGISLE 329
>pdb|3PYO|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|U Chain U, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|U Chain U, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 100
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 128 EKLAELHGNSFREICPSCG 146
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
>pdb|3FIN|Y Chain Y, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 101
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 128 EKLAELHGNSFREICPSCG 146
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 102
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 128 EKLAELHGNSFREICPSCG 146
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|X Chain X, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|S Chain S, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|S Chain S, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|Y Chain Y, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|Y Chain Y, Ef-Tu Complex 3
pdb|2Y19|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|Y Chain Y, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 110
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 128 EKLAELHGNSFREICPSCG 146
EK A LH + R ICP+CG
Sbjct: 62 EKEAPLHASKVRPICPACG 80
>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s)
Length = 109
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 128 EKLAELHGNSFREICPSCG 146
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,407,318
Number of Sequences: 62578
Number of extensions: 421187
Number of successful extensions: 841
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 55
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)