Query 018442
Match_columns 356
No_of_seqs 192 out of 1300
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905 Class IV sirtuins (SIR 100.0 1.4E-79 3.1E-84 573.4 17.4 326 1-340 12-344 (353)
2 PRK14138 NAD-dependent deacety 100.0 1.8E-60 3.9E-65 447.9 21.0 227 35-266 2-243 (244)
3 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 2.1E-60 4.5E-65 437.0 18.8 206 45-252 1-206 (206)
4 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 8.7E-61 1.9E-65 453.8 16.7 217 37-257 1-260 (260)
5 PTZ00409 Sir2 (Silent Informat 100.0 1E-59 2.2E-64 448.2 19.1 230 29-264 13-262 (271)
6 PRK05333 NAD-dependent deacety 100.0 2.1E-58 4.7E-63 442.9 22.0 232 32-267 7-280 (285)
7 COG0846 SIR2 NAD-dependent pro 100.0 4.7E-59 1E-63 437.2 16.6 228 34-266 2-247 (250)
8 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 1.1E-58 2.4E-63 433.6 17.8 212 45-260 1-235 (235)
9 PRK00481 NAD-dependent deacety 100.0 5.2E-58 1.1E-62 430.7 20.7 223 33-264 2-240 (242)
10 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 5.5E-57 1.2E-61 418.8 16.2 206 41-252 1-222 (222)
11 PTZ00410 NAD-dependent SIR2; P 100.0 3.3E-56 7.1E-61 434.2 18.2 232 31-267 14-325 (349)
12 PTZ00408 NAD-dependent deacety 100.0 5.3E-56 1.1E-60 416.7 17.2 211 42-264 2-235 (242)
13 cd01411 SIR2H SIR2H: Uncharact 100.0 6.1E-56 1.3E-60 412.6 15.0 206 37-256 1-224 (225)
14 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 2.8E-55 6.1E-60 407.4 16.8 208 45-261 1-224 (224)
15 cd01407 SIR2-fam SIR2 family o 100.0 6.6E-55 1.4E-59 403.6 17.3 202 45-252 1-218 (218)
16 KOG2682 NAD-dependent histone 100.0 3.4E-50 7.3E-55 366.2 12.0 232 32-267 22-281 (314)
17 cd00296 SIR2 SIR2 superfamily 100.0 4.4E-49 9.4E-54 364.0 17.1 202 45-252 1-222 (222)
18 KOG2684 Sirtuin 5 and related 100.0 1.8E-48 4E-53 379.2 16.0 240 32-276 76-353 (412)
19 KOG2683 Sirtuin 4 and related 100.0 3.4E-48 7.5E-53 352.8 14.6 232 24-259 25-304 (305)
20 PF02146 SIR2: Sir2 family; I 100.0 1.3E-47 2.7E-52 344.3 5.6 159 52-216 1-178 (178)
21 cd01406 SIR2-like Sir2-like: P 98.6 3.1E-08 6.7E-13 92.9 4.6 79 45-123 1-112 (242)
22 COG0028 IlvB Thiamine pyrophos 96.5 0.05 1.1E-06 57.4 14.2 70 194-266 259-330 (550)
23 PF00205 TPP_enzyme_M: Thiamin 96.5 0.009 1.9E-07 50.9 6.9 66 194-260 70-137 (137)
24 PRK07979 acetolactate synthase 94.4 0.091 2E-06 55.5 6.9 70 194-265 265-336 (574)
25 PRK08979 acetolactate synthase 94.4 0.089 1.9E-06 55.5 6.8 71 194-266 265-337 (572)
26 PRK06882 acetolactate synthase 94.2 0.11 2.3E-06 54.8 6.9 70 194-265 265-336 (574)
27 PRK09107 acetolactate synthase 94.2 0.11 2.4E-06 55.2 7.0 70 194-265 273-344 (595)
28 TIGR01504 glyox_carbo_lig glyo 94.2 0.1 2.2E-06 55.5 6.6 69 194-264 262-332 (588)
29 PRK08322 acetolactate synthase 94.2 0.12 2.6E-06 54.1 7.2 69 194-265 255-325 (547)
30 PRK07524 hypothetical protein; 94.2 0.082 1.8E-06 55.2 5.9 74 193-266 255-330 (535)
31 PRK07418 acetolactate synthase 94.0 0.12 2.6E-06 55.1 6.8 70 194-265 283-354 (616)
32 CHL00099 ilvB acetohydroxyacid 94.0 0.16 3.4E-06 53.9 7.6 69 195-265 277-347 (585)
33 PRK07789 acetolactate synthase 93.9 0.12 2.7E-06 55.0 6.7 70 194-265 290-361 (612)
34 PRK08527 acetolactate synthase 93.9 0.14 3E-06 53.9 7.0 71 194-266 262-334 (563)
35 PRK06466 acetolactate synthase 93.8 0.14 3.1E-06 54.0 6.9 70 194-265 265-336 (574)
36 TIGR02418 acolac_catab acetola 93.7 0.18 3.8E-06 52.8 7.3 69 194-265 255-325 (539)
37 PLN02470 acetolactate synthase 93.6 0.17 3.6E-06 53.6 7.1 70 194-265 272-343 (585)
38 PRK06154 hypothetical protein; 93.6 0.17 3.7E-06 53.5 7.1 69 194-266 273-343 (565)
39 PRK06725 acetolactate synthase 93.6 0.16 3.5E-06 53.6 6.8 70 194-265 273-344 (570)
40 PRK06456 acetolactate synthase 93.5 0.17 3.6E-06 53.4 6.8 70 195-265 267-338 (572)
41 PRK05858 hypothetical protein; 93.4 0.24 5.1E-06 52.0 7.7 79 183-265 244-324 (542)
42 PRK11269 glyoxylate carboligas 93.4 0.18 4E-06 53.4 6.9 69 195-265 264-334 (591)
43 PRK08978 acetolactate synthase 93.4 0.17 3.7E-06 53.0 6.5 69 194-264 255-325 (548)
44 PRK08199 thiamine pyrophosphat 93.3 0.17 3.8E-06 53.1 6.5 78 194-271 263-343 (557)
45 PRK07282 acetolactate synthase 93.3 0.19 4.2E-06 53.0 6.8 70 194-265 269-340 (566)
46 TIGR03254 oxalate_oxc oxalyl-C 93.2 0.25 5.3E-06 52.0 7.5 70 195-265 259-330 (554)
47 PRK06112 acetolactate synthase 93.2 0.21 4.5E-06 52.8 6.9 70 194-265 277-347 (578)
48 PF13289 SIR2_2: SIR2-like dom 93.1 0.15 3.2E-06 42.9 4.7 42 198-239 82-127 (143)
49 PRK08155 acetolactate synthase 93.1 0.24 5.3E-06 52.1 7.2 69 195-265 271-341 (564)
50 TIGR00118 acolac_lg acetolacta 93.1 0.2 4.4E-06 52.6 6.6 70 194-265 260-331 (558)
51 PRK06048 acetolactate synthase 92.9 0.24 5.3E-06 52.1 6.8 71 194-266 266-338 (561)
52 PRK08327 acetolactate synthase 92.7 0.24 5.1E-06 52.4 6.5 68 195-266 273-345 (569)
53 PRK06276 acetolactate synthase 92.7 0.29 6.2E-06 51.9 7.1 70 194-265 262-333 (586)
54 PRK07525 sulfoacetaldehyde ace 92.7 0.23 4.9E-06 52.7 6.3 72 194-265 259-333 (588)
55 TIGR03457 sulphoacet_xsc sulfo 92.7 0.34 7.4E-06 51.2 7.6 72 194-265 255-329 (579)
56 PRK08266 hypothetical protein; 92.7 0.21 4.6E-06 52.2 6.0 69 194-265 256-325 (542)
57 PRK09259 putative oxalyl-CoA d 92.4 0.38 8.2E-06 50.7 7.5 69 196-265 267-337 (569)
58 PRK08611 pyruvate oxidase; Pro 92.4 0.3 6.5E-06 51.7 6.8 65 194-265 260-326 (576)
59 PRK06965 acetolactate synthase 92.3 0.27 5.9E-06 52.1 6.4 71 194-265 280-352 (587)
60 PRK08273 thiamine pyrophosphat 92.2 0.33 7.1E-06 51.6 6.8 68 194-266 265-334 (597)
61 PRK08617 acetolactate synthase 91.9 0.36 7.8E-06 50.7 6.7 68 195-265 262-331 (552)
62 PRK06546 pyruvate dehydrogenas 91.9 0.37 8E-06 51.0 6.7 65 194-266 258-324 (578)
63 PRK07710 acetolactate synthase 91.7 0.41 8.9E-06 50.5 6.8 70 194-265 274-345 (571)
64 TIGR00173 menD 2-succinyl-5-en 91.2 0.42 9E-06 48.7 6.1 65 197-265 271-337 (432)
65 PRK07064 hypothetical protein; 90.8 0.51 1.1E-05 49.3 6.4 69 194-265 257-327 (544)
66 TIGR02720 pyruv_oxi_spxB pyruv 90.4 0.53 1.2E-05 49.8 6.2 69 194-266 257-327 (575)
67 PRK09124 pyruvate dehydrogenas 90.2 0.65 1.4E-05 49.0 6.6 64 195-265 259-324 (574)
68 KOG1185 Thiamine pyrophosphate 88.9 0.6 1.3E-05 48.3 4.8 82 184-266 259-343 (571)
69 PLN02573 pyruvate decarboxylas 88.3 0.76 1.7E-05 48.7 5.5 69 194-265 284-352 (578)
70 COG3962 Acetolactate synthase 87.0 1.5 3.2E-05 45.3 6.3 72 194-266 288-359 (617)
71 TIGR03393 indolpyr_decarb indo 86.4 0.64 1.4E-05 48.7 3.6 69 194-265 265-335 (539)
72 smart00834 CxxC_CXXC_SSSS Puta 86.1 0.33 7.2E-06 32.5 0.9 34 138-177 4-37 (41)
73 PRK07092 benzoylformate decarb 86.0 1.4 2.9E-05 46.2 5.7 72 193-265 264-336 (530)
74 cd02750 MopB_Nitrate-R-NarG-li 86.0 1.5 3.3E-05 45.0 6.0 53 197-249 166-220 (461)
75 PRK06457 pyruvate dehydrogenas 85.6 1.8 3.9E-05 45.4 6.4 59 194-259 252-312 (549)
76 cd02759 MopB_Acetylene-hydrata 85.5 1.3 2.9E-05 45.5 5.3 68 197-264 156-229 (477)
77 PLN00022 electron transfer fla 84.6 1.9 4E-05 43.3 5.6 60 201-265 293-353 (356)
78 COG2025 FixB Electron transfer 84.4 2.3 5E-05 41.9 6.1 60 201-265 251-311 (313)
79 cd02766 MopB_3 The MopB_3 CD i 83.7 1.8 4E-05 44.9 5.5 55 196-250 152-208 (501)
80 PRK07449 2-succinyl-5-enolpyru 83.5 2.3 4.9E-05 44.8 6.1 62 195-259 280-343 (568)
81 PRK03363 fixB putative electro 83.4 2.3 5.1E-05 41.8 5.7 60 201-265 252-312 (313)
82 PF09723 Zn-ribbon_8: Zinc rib 83.1 0.46 1E-05 32.6 0.5 34 137-176 3-37 (42)
83 PF03366 YEATS: YEATS family; 81.8 3.7 8.1E-05 32.5 5.3 50 295-345 3-52 (84)
84 cd02753 MopB_Formate-Dh-H Form 81.3 2.5 5.5E-05 43.7 5.4 54 197-250 152-207 (512)
85 PRK11916 electron transfer fla 80.7 3.3 7.2E-05 40.8 5.6 60 201-265 251-311 (312)
86 cd02765 MopB_4 The MopB_4 CD i 80.2 2.1 4.5E-05 45.3 4.3 54 197-250 155-210 (567)
87 cd02763 MopB_2 The MopB_2 CD i 80.0 3.1 6.7E-05 45.2 5.6 54 197-250 151-206 (679)
88 cd02767 MopB_ydeP The MopB_yde 79.7 3.5 7.5E-05 43.9 5.8 43 197-239 159-203 (574)
89 TIGR03394 indol_phenyl_DC indo 79.5 2 4.3E-05 45.1 3.9 68 194-264 261-330 (535)
90 PF02233 PNTB: NAD(P) transhyd 78.2 3.7 8.1E-05 42.5 5.3 88 177-264 355-463 (463)
91 cd02754 MopB_Nitrate-R-NapA-li 77.9 3.3 7E-05 43.5 5.0 53 197-249 153-209 (565)
92 PRK09444 pntB pyridine nucleot 77.6 6.8 0.00015 40.4 6.9 88 177-264 354-462 (462)
93 TIGR01591 Fdh-alpha formate de 77.4 3.1 6.8E-05 44.6 4.7 53 197-249 151-205 (671)
94 cd02768 MopB_NADH-Q-OR-NuoG2 M 77.3 5.1 0.00011 39.7 5.9 56 197-254 144-202 (386)
95 TIGR01553 formate-DH-alph form 76.7 3.9 8.4E-05 46.5 5.4 68 197-264 217-289 (1009)
96 cd02755 MopB_Thiosulfate-R-lik 76.6 2.4 5.1E-05 43.5 3.4 53 198-250 153-208 (454)
97 cd02762 MopB_1 The MopB_1 CD i 76.4 4 8.7E-05 42.7 5.1 53 197-249 152-212 (539)
98 PF07295 DUF1451: Protein of u 76.3 1.6 3.5E-05 38.3 1.8 30 137-175 110-139 (146)
99 cd02752 MopB_Formate-Dh-Na-lik 75.3 4.5 9.8E-05 43.7 5.2 54 197-250 165-221 (649)
100 cd02760 MopB_Phenylacetyl-CoA- 75.1 5.4 0.00012 43.9 5.8 68 197-264 169-242 (760)
101 TIGR00373 conserved hypothetic 74.8 2.1 4.6E-05 37.9 2.2 34 136-177 106-139 (158)
102 TIGR03479 DMSO_red_II_alp DMSO 74.6 2.8 6.1E-05 47.0 3.6 62 196-257 219-284 (912)
103 PRK06266 transcription initiat 74.5 2.2 4.8E-05 38.5 2.3 32 139-178 117-148 (178)
104 COG1282 PntB NAD/NADP transhyd 74.0 7.4 0.00016 39.2 5.9 87 177-264 356-463 (463)
105 cd02757 MopB_Arsenate-R This C 73.8 5.1 0.00011 42.0 5.1 67 198-264 159-232 (523)
106 PRK09939 putative oxidoreducta 72.9 5.9 0.00013 43.7 5.5 44 197-240 204-249 (759)
107 TIGR02605 CxxC_CxxC_SSSS putat 72.4 1.7 3.7E-05 30.8 0.8 31 138-174 4-34 (52)
108 PRK12496 hypothetical protein; 72.0 1.7 3.6E-05 38.8 0.8 44 120-177 105-154 (164)
109 TIGR00354 polC DNA polymerase, 71.8 1.3 2.9E-05 49.1 0.2 55 132-200 1000-1059(1095)
110 PRK00398 rpoP DNA-directed RNA 71.7 2.4 5.2E-05 29.4 1.4 29 139-176 3-31 (46)
111 cd02751 MopB_DMSOR-like The Mo 71.3 9.3 0.0002 40.7 6.5 52 198-249 165-228 (609)
112 PRK15488 thiosulfate reductase 70.9 6.7 0.00015 42.9 5.4 52 198-249 193-248 (759)
113 TIGR02098 MJ0042_CXXC MJ0042 f 70.8 2.1 4.6E-05 28.3 0.9 33 140-176 3-35 (38)
114 cd00368 Molybdopterin-Binding 70.6 4.2 9.1E-05 39.8 3.4 53 197-249 152-206 (374)
115 PRK11032 hypothetical protein; 70.4 2.6 5.7E-05 37.5 1.7 29 138-175 123-151 (160)
116 smart00531 TFIIE Transcription 70.0 2.8 6.1E-05 36.5 1.8 37 139-178 99-135 (147)
117 cd02770 MopB_DmsA-EC This CD ( 69.7 5.5 0.00012 42.5 4.3 53 197-249 162-220 (617)
118 COG3383 Uncharacterized anaero 69.5 7.5 0.00016 42.6 5.1 93 164-264 387-489 (978)
119 TIGR01701 Fdhalpha-like oxidor 69.4 8.7 0.00019 42.2 5.8 44 197-240 194-239 (743)
120 PRK14714 DNA polymerase II lar 68.4 1.7 3.8E-05 49.6 0.2 55 132-200 1241-1300(1337)
121 PRK04023 DNA polymerase II lar 67.9 2.6 5.6E-05 47.2 1.3 55 132-200 1025-1084(1121)
122 cd02758 MopB_Tetrathionate-Ra 67.3 9.1 0.0002 42.0 5.4 54 197-250 207-269 (735)
123 cd02769 MopB_DMSOR-BSOR-TMAOR 66.9 8.4 0.00018 41.1 5.0 60 198-257 167-240 (609)
124 TIGR00509 bisC_fam molybdopter 65.4 8.3 0.00018 42.3 4.7 59 199-257 165-236 (770)
125 PF05191 ADK_lid: Adenylate ki 65.1 2.3 4.9E-05 28.4 0.2 30 140-176 2-31 (36)
126 cd02761 MopB_FmdB-FwdB The Mop 64.9 18 0.00039 36.1 6.7 51 200-250 130-190 (415)
127 PRK06260 threonine synthase; V 64.7 3.4 7.3E-05 41.7 1.4 29 138-177 2-30 (397)
128 cd02773 MopB_Res-Cmplx1_Nad11 63.4 13 0.00027 37.0 5.2 51 197-247 141-194 (375)
129 PF00384 Molybdopterin: Molybd 61.7 5 0.00011 40.1 2.0 68 197-264 107-180 (432)
130 PRK07860 NADH dehydrogenase su 61.5 14 0.0003 41.0 5.5 54 196-249 371-428 (797)
131 cd02764 MopB_PHLH The MopB_PHL 60.6 14 0.00031 38.5 5.2 67 198-264 193-272 (524)
132 COG1379 PHP family phosphoeste 60.1 2.8 6.2E-05 41.3 -0.1 42 132-181 239-280 (403)
133 PRK14715 DNA polymerase II lar 58.1 3.6 7.8E-05 47.4 0.3 55 132-201 1530-1589(1627)
134 cd02772 MopB_NDH-1_NuoG2 MopB_ 57.9 15 0.00033 36.8 4.8 45 196-240 147-193 (414)
135 COG1029 FwdB Formylmethanofura 57.7 12 0.00026 37.7 3.7 74 177-254 306-385 (429)
136 PF00205 TPP_enzyme_M: Thiamin 57.5 6.9 0.00015 32.9 1.9 25 34-58 1-25 (137)
137 cd00350 rubredoxin_like Rubred 57.2 7.8 0.00017 25.0 1.7 25 140-175 2-26 (33)
138 PRK08493 NADH dehydrogenase su 56.7 18 0.0004 40.2 5.4 70 196-265 365-443 (819)
139 PF09845 DUF2072: Zn-ribbon co 56.6 4.8 0.0001 34.6 0.7 26 141-175 3-28 (131)
140 COG1996 RPC10 DNA-directed RNA 55.2 5.8 0.00012 28.4 0.8 28 139-175 6-33 (49)
141 TIGR01973 NuoG NADH-quinone ox 55.2 13 0.00029 39.6 3.9 54 196-249 357-413 (603)
142 PF09538 FYDLN_acid: Protein o 55.1 8.9 0.00019 31.9 2.1 30 140-179 10-39 (108)
143 PRK07591 threonine synthase; V 54.9 5.9 0.00013 40.4 1.2 28 138-177 17-44 (421)
144 PF13240 zinc_ribbon_2: zinc-r 54.7 8.5 0.00018 23.0 1.4 23 141-176 1-23 (23)
145 cd05014 SIS_Kpsf KpsF-like pro 54.7 22 0.00049 29.1 4.5 57 197-253 43-100 (128)
146 COG3091 SprT Zn-dependent meta 54.4 2.1 4.6E-05 37.7 -1.8 78 95-177 70-151 (156)
147 PF13248 zf-ribbon_3: zinc-rib 54.1 6.5 0.00014 24.0 0.8 24 140-176 3-26 (26)
148 PF13719 zinc_ribbon_5: zinc-r 53.6 7.5 0.00016 25.8 1.1 32 140-175 3-34 (37)
149 PF13717 zinc_ribbon_4: zinc-r 53.4 7.8 0.00017 25.7 1.2 32 140-175 3-34 (36)
150 PRK14990 anaerobic dimethyl su 53.3 18 0.00039 39.9 4.7 55 196-250 226-287 (814)
151 PRK13937 phosphoheptose isomer 52.8 27 0.00058 31.4 5.0 57 196-252 101-158 (188)
152 PRK06450 threonine synthase; V 52.0 8.7 0.00019 38.1 1.8 26 140-177 4-29 (338)
153 cd05006 SIS_GmhA Phosphoheptos 51.5 34 0.00073 30.1 5.4 55 197-251 97-152 (177)
154 TIGR02300 FYDLN_acid conserved 51.3 11 0.00025 32.2 2.1 30 140-179 10-39 (129)
155 PRK09129 NADH dehydrogenase su 51.2 22 0.00048 39.1 5.0 46 196-241 365-412 (776)
156 PLN02980 2-oxoglutarate decarb 50.9 31 0.00068 41.4 6.5 65 197-263 594-660 (1655)
157 TIGR02166 dmsA_ynfE anaerobic 49.5 19 0.00042 39.5 4.2 53 197-249 210-269 (797)
158 COG3961 Pyruvate decarboxylase 48.1 29 0.00063 36.6 4.9 78 181-264 248-335 (557)
159 TIGR03127 RuMP_HxlB 6-phospho 48.0 23 0.00049 31.2 3.7 52 199-250 70-122 (179)
160 smart00659 RPOLCX RNA polymera 48.0 11 0.00025 26.1 1.4 27 140-176 3-29 (44)
161 TIGR03844 cysteate_syn cysteat 48.0 11 0.00024 38.2 2.0 27 139-177 2-28 (398)
162 PF04864 Alliinase_C: Allinase 47.9 21 0.00046 35.7 3.8 42 7-53 30-75 (363)
163 COG3364 Zn-ribbon containing p 47.4 11 0.00024 31.1 1.4 26 140-175 3-29 (112)
164 PRK13532 nitrate reductase cat 47.0 24 0.00051 39.2 4.4 53 197-250 202-259 (830)
165 TIGR01580 narG respiratory nit 46.9 20 0.00044 41.5 3.9 60 198-257 242-305 (1235)
166 PF01155 HypA: Hydrogenase exp 46.2 7.3 0.00016 32.4 0.2 35 130-175 61-95 (113)
167 COG1439 Predicted nucleic acid 46.0 8.6 0.00019 34.8 0.7 27 138-177 138-164 (177)
168 COG2331 Uncharacterized protei 46.0 8.4 0.00018 30.1 0.5 41 138-184 11-56 (82)
169 cd05710 SIS_1 A subgroup of th 46.0 24 0.00053 29.1 3.4 57 198-254 44-101 (120)
170 PF04574 DUF592: Protein of un 45.8 20 0.00044 31.6 2.9 20 32-51 134-153 (153)
171 TIGR00595 priA primosomal prot 45.7 90 0.0019 32.7 8.3 27 251-277 392-419 (505)
172 KOG4166 Thiamine pyrophosphate 44.8 26 0.00056 36.2 3.9 43 20-62 273-316 (675)
173 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.6 28 0.0006 28.4 3.5 56 198-253 43-99 (126)
174 cd00729 rubredoxin_SM Rubredox 44.5 14 0.0003 24.2 1.3 26 139-175 2-27 (34)
175 PF02591 DUF164: Putative zinc 44.4 26 0.00056 25.2 2.9 41 129-176 16-56 (56)
176 COG0243 BisC Anaerobic dehydro 44.0 19 0.0004 39.5 3.0 67 198-264 196-270 (765)
177 PRK00945 acetyl-CoA decarbonyl 43.7 49 0.0011 29.8 5.2 59 200-262 107-166 (171)
178 PRK12474 hypothetical protein; 43.4 71 0.0015 33.3 7.1 59 194-265 259-320 (518)
179 TIGR00853 pts-lac PTS system, 43.4 11 0.00025 30.3 0.9 16 43-58 2-17 (95)
180 PRK00564 hypA hydrogenase nick 43.3 14 0.00031 30.9 1.6 35 131-175 63-97 (117)
181 TIGR00100 hypA hydrogenase nic 43.1 10 0.00022 31.7 0.6 27 138-175 69-95 (115)
182 COG3357 Predicted transcriptio 42.0 11 0.00023 30.5 0.5 28 139-175 58-85 (97)
183 TIGR03129 one_C_dehyd_B formyl 41.9 63 0.0014 32.1 6.2 51 200-250 136-196 (421)
184 PF14311 DUF4379: Domain of un 41.6 20 0.00042 25.7 1.9 28 125-152 14-41 (55)
185 PRK09590 celB cellobiose phosp 41.5 12 0.00026 30.8 0.8 14 45-58 2-15 (104)
186 PRK12380 hydrogenase nickel in 41.3 11 0.00024 31.5 0.6 33 132-175 63-95 (113)
187 cd05013 SIS_RpiR RpiR-like pro 41.0 15 0.00032 30.0 1.3 27 33-60 2-28 (139)
188 PF04016 DUF364: Domain of unk 40.9 27 0.00059 30.3 3.0 71 192-264 53-132 (147)
189 PRK05580 primosome assembly pr 39.4 48 0.001 36.1 5.3 27 251-277 560-587 (679)
190 COG1737 RpiR Transcriptional r 39.3 45 0.00098 32.0 4.5 57 195-251 171-228 (281)
191 PRK13938 phosphoheptose isomer 39.3 51 0.0011 30.1 4.7 58 194-251 106-164 (196)
192 COG1675 TFA1 Transcription ini 39.3 23 0.00049 32.1 2.3 30 140-177 114-143 (176)
193 PRK00945 acetyl-CoA decarbonyl 38.9 39 0.00085 30.4 3.7 25 33-57 23-47 (171)
194 TIGR00375 conserved hypothetic 38.6 18 0.00038 36.6 1.7 41 132-181 233-273 (374)
195 PRK07586 hypothetical protein; 38.6 94 0.002 32.2 7.1 60 193-265 254-316 (514)
196 PF01475 FUR: Ferric uptake re 38.6 32 0.0007 28.3 3.0 48 92-150 42-91 (120)
197 TIGR00441 gmhA phosphoheptose 37.9 72 0.0016 27.5 5.2 54 198-251 76-130 (154)
198 cd00730 rubredoxin Rubredoxin; 37.2 21 0.00046 25.5 1.4 13 140-152 2-14 (50)
199 KOG3954 Electron transfer flav 36.8 42 0.00092 32.5 3.8 57 204-265 277-334 (336)
200 PF02302 PTS_IIB: PTS system, 36.8 16 0.00035 28.2 0.8 14 46-59 1-14 (90)
201 COG1867 TRM1 N2,N2-dimethylgua 36.5 32 0.00068 34.8 3.0 67 129-211 232-299 (380)
202 COG3142 CutC Uncharacterized p 36.4 35 0.00076 32.3 3.1 41 29-70 153-194 (241)
203 PRK03824 hypA hydrogenase nick 36.1 16 0.00034 31.5 0.8 15 138-152 69-83 (135)
204 COG1579 Zn-ribbon protein, pos 36.0 23 0.0005 33.6 1.9 41 129-176 191-231 (239)
205 TIGR01706 NAPA periplasmic nit 35.9 37 0.0008 37.7 3.8 53 197-250 202-259 (830)
206 PF00301 Rubredoxin: Rubredoxi 35.9 20 0.00044 25.3 1.1 14 139-152 1-14 (47)
207 COG1440 CelA Phosphotransferas 35.8 21 0.00046 29.4 1.4 14 45-58 2-15 (102)
208 cd02068 radical_SAM_B12_BD B12 35.3 1.1E+02 0.0024 25.2 5.8 67 200-266 38-112 (127)
209 PRK13936 phosphoheptose isomer 35.0 43 0.00093 30.4 3.5 57 197-253 107-167 (197)
210 PRK11302 DNA-binding transcrip 34.7 66 0.0014 30.3 4.8 55 197-251 171-225 (284)
211 PRK00805 putative deoxyhypusin 34.5 1.2E+02 0.0025 30.3 6.6 20 245-264 290-309 (329)
212 cd05564 PTS_IIB_chitobiose_lic 34.5 19 0.00042 28.9 1.0 13 46-58 1-13 (96)
213 COG0549 ArcC Carbamate kinase 34.2 72 0.0016 31.3 4.9 72 35-126 174-245 (312)
214 TIGR00315 cdhB CO dehydrogenas 34.1 38 0.00083 30.2 2.9 25 33-57 16-40 (162)
215 PF14419 SPOUT_MTase_2: AF2226 33.7 49 0.0011 29.6 3.4 62 24-94 99-162 (173)
216 PRK14717 putative glycine/sarc 33.7 59 0.0013 26.8 3.6 36 32-68 7-51 (107)
217 cd05013 SIS_RpiR RpiR-like pro 33.7 82 0.0018 25.5 4.7 57 197-253 56-113 (139)
218 PRK00414 gmhA phosphoheptose i 32.9 74 0.0016 28.7 4.7 56 197-252 107-163 (192)
219 PF12172 DUF35_N: Rubredoxin-l 32.8 19 0.00041 23.6 0.5 28 134-174 6-33 (37)
220 COG2093 DNA-directed RNA polym 32.6 40 0.00087 25.4 2.3 35 216-269 22-56 (64)
221 PRK09130 NADH dehydrogenase su 32.5 69 0.0015 35.0 5.1 45 196-240 359-406 (687)
222 COG3961 Pyruvate decarboxylase 32.4 72 0.0016 33.7 4.9 38 20-57 185-222 (557)
223 COG4019 Uncharacterized protei 32.4 49 0.0011 28.5 3.1 25 29-53 21-45 (156)
224 PF13580 SIS_2: SIS domain; PD 32.3 59 0.0013 27.5 3.7 36 199-234 101-136 (138)
225 PRK03681 hypA hydrogenase nick 32.0 27 0.00059 29.1 1.5 28 138-175 69-96 (114)
226 PRK10499 PTS system N,N'-diace 32.0 23 0.00051 29.1 1.1 14 45-58 4-17 (106)
227 cd05005 SIS_PHI Hexulose-6-pho 31.0 49 0.0011 29.2 3.1 54 199-252 73-127 (179)
228 cd02756 MopB_Arsenite-Ox Arsen 30.9 82 0.0018 34.4 5.3 51 196-246 218-288 (676)
229 PRK07524 hypothetical protein; 30.8 47 0.001 34.7 3.4 26 31-56 188-213 (535)
230 cd07153 Fur_like Ferric uptake 30.7 82 0.0018 25.4 4.2 51 89-150 32-84 (116)
231 PRK10310 PTS system galactitol 30.5 23 0.0005 28.3 0.8 14 46-59 4-17 (94)
232 COG1773 Rubredoxin [Energy pro 30.4 27 0.00058 25.6 1.0 15 138-152 2-16 (55)
233 TIGR00746 arcC carbamate kinas 30.1 82 0.0018 31.0 4.7 68 37-124 174-241 (310)
234 PRK00762 hypA hydrogenase nick 30.1 26 0.00056 29.7 1.1 32 138-175 69-101 (124)
235 COG5257 GCD11 Translation init 29.6 3.2E+02 0.0068 27.6 8.5 33 251-285 188-220 (415)
236 PRK08273 thiamine pyrophosphat 29.2 54 0.0012 34.9 3.5 26 31-56 195-220 (597)
237 COG1198 PriA Primosomal protei 28.8 1.7E+02 0.0037 32.3 7.3 41 192-238 523-563 (730)
238 COG3925 N-terminal domain of t 28.6 58 0.0013 26.6 2.8 32 199-238 38-69 (103)
239 PRK07979 acetolactate synthase 28.6 57 0.0012 34.5 3.6 28 31-58 193-220 (574)
240 cd02774 MopB_Res-Cmplx1_Nad11- 28.5 63 0.0014 32.4 3.7 44 195-238 142-188 (366)
241 PF10263 SprT-like: SprT-like 28.5 22 0.00048 30.5 0.4 36 136-178 120-155 (157)
242 PF10571 UPF0547: Uncharacteri 28.5 43 0.00093 20.6 1.6 22 141-175 2-23 (26)
243 TIGR03457 sulphoacet_xsc sulfo 28.5 57 0.0012 34.5 3.6 28 31-58 183-210 (579)
244 TIGR03393 indolpyr_decarb indo 28.4 63 0.0014 33.9 3.8 28 30-57 191-218 (539)
245 PRK02301 putative deoxyhypusin 27.8 1.7E+02 0.0036 29.0 6.4 28 97-124 75-105 (316)
246 PRK06965 acetolactate synthase 27.8 58 0.0013 34.6 3.5 27 31-57 208-234 (587)
247 PF01380 SIS: SIS domain SIS d 27.7 34 0.00075 27.8 1.4 55 197-251 49-104 (131)
248 KOG1532 GTPase XAB1, interacts 27.7 55 0.0012 32.2 2.9 43 198-240 15-59 (366)
249 TIGR01504 glyox_carbo_lig glyo 27.6 62 0.0013 34.4 3.7 28 31-58 189-216 (588)
250 TIGR02663 nifX nitrogen fixati 27.4 1.9E+02 0.0042 23.8 5.9 64 192-274 54-117 (119)
251 TIGR02026 BchE magnesium-proto 27.1 1.4E+02 0.003 31.1 6.1 65 201-265 63-136 (497)
252 PF11576 DUF3236: Protein of u 27.1 55 0.0012 28.7 2.6 25 30-54 21-45 (154)
253 PRK13937 phosphoheptose isomer 26.8 74 0.0016 28.5 3.5 31 27-58 21-51 (188)
254 PRK15482 transcriptional regul 26.8 1.1E+02 0.0023 29.1 4.8 58 196-253 177-235 (285)
255 CHL00099 ilvB acetohydroxyacid 26.7 63 0.0014 34.3 3.5 27 31-57 204-230 (585)
256 TIGR00300 conserved hypothetic 26.6 71 0.0015 32.5 3.6 69 193-265 331-405 (407)
257 PRK14991 tetrathionate reducta 26.5 72 0.0016 36.6 4.1 60 198-257 282-353 (1031)
258 PRK09462 fur ferric uptake reg 26.5 92 0.002 26.7 4.0 51 89-150 49-101 (148)
259 PRK11557 putative DNA-binding 26.3 1.1E+02 0.0024 28.8 4.8 58 194-251 168-226 (278)
260 TIGR02720 pyruv_oxi_spxB pyruv 26.2 62 0.0013 34.3 3.3 26 31-56 187-212 (575)
261 COG1545 Predicted nucleic-acid 26.2 35 0.00077 29.5 1.3 29 135-176 25-53 (140)
262 PRK09259 putative oxalyl-CoA d 26.2 63 0.0014 34.1 3.4 27 31-57 200-226 (569)
263 PRK02947 hypothetical protein; 26.0 1.1E+02 0.0023 28.9 4.6 41 198-238 103-143 (246)
264 PF14353 CpXC: CpXC protein 26.0 31 0.00068 28.9 0.9 16 134-149 33-48 (128)
265 TIGR02164 torA trimethylamine- 26.0 62 0.0013 35.9 3.4 59 199-257 208-283 (822)
266 PRK06112 acetolactate synthase 25.8 67 0.0015 33.9 3.5 27 31-57 200-226 (578)
267 COG0761 lytB 4-Hydroxy-3-methy 25.7 84 0.0018 30.7 3.8 71 194-265 205-282 (294)
268 PRK11557 putative DNA-binding 25.6 66 0.0014 30.4 3.1 26 32-58 116-141 (278)
269 PRK06725 acetolactate synthase 25.5 71 0.0015 33.8 3.6 27 32-58 202-228 (570)
270 PRK08197 threonine synthase; V 25.5 34 0.00074 34.4 1.2 14 139-152 7-20 (394)
271 PF10122 Mu-like_Com: Mu-like 25.5 19 0.0004 26.0 -0.5 31 138-175 3-33 (51)
272 PRK07418 acetolactate synthase 25.4 70 0.0015 34.2 3.6 26 31-56 211-236 (616)
273 PRK04351 hypothetical protein; 25.3 27 0.00059 30.6 0.4 38 134-178 107-144 (149)
274 PRK06154 hypothetical protein; 25.2 70 0.0015 33.8 3.5 28 31-58 201-228 (565)
275 PRK07586 hypothetical protein; 25.0 69 0.0015 33.2 3.4 28 31-58 184-211 (514)
276 cd06409 PB1_MUG70 The MUG70 pr 24.8 1.7E+02 0.0037 23.3 4.8 55 226-302 7-61 (86)
277 PRK11269 glyoxylate carboligas 24.5 75 0.0016 33.7 3.6 28 31-58 190-217 (591)
278 PRK10886 DnaA initiator-associ 24.5 1.5E+02 0.0033 27.0 5.2 57 195-251 103-163 (196)
279 PRK07789 acetolactate synthase 24.5 76 0.0017 33.9 3.7 27 31-57 218-244 (612)
280 PLN02470 acetolactate synthase 24.5 69 0.0015 34.0 3.3 26 31-56 202-227 (585)
281 PLN02573 pyruvate decarboxylas 24.4 74 0.0016 33.8 3.5 29 30-58 210-238 (578)
282 PRK07525 sulfoacetaldehyde ace 24.2 76 0.0016 33.7 3.6 28 31-58 187-214 (588)
283 TIGR02693 arsenite_ox_L arseni 24.1 1.1E+02 0.0023 34.1 4.8 51 196-246 215-284 (806)
284 PRK08979 acetolactate synthase 24.1 73 0.0016 33.7 3.4 27 31-57 193-219 (572)
285 COG1110 Reverse gyrase [DNA re 24.1 69 0.0015 36.6 3.2 53 140-214 695-747 (1187)
286 PRK07282 acetolactate synthase 24.1 78 0.0017 33.5 3.6 27 31-57 197-223 (566)
287 TIGR00315 cdhB CO dehydrogenas 24.0 1.6E+02 0.0034 26.3 5.0 62 195-262 91-158 (162)
288 PF02035 Coagulin: Coagulin; 23.7 68 0.0015 27.7 2.5 52 14-71 10-61 (174)
289 PRK08166 NADH dehydrogenase su 23.7 47 0.001 37.0 2.0 41 197-237 367-409 (847)
290 TIGR02418 acolac_catab acetola 23.6 79 0.0017 33.0 3.5 27 32-58 183-209 (539)
291 PRK15102 trimethylamine N-oxid 23.6 1.1E+02 0.0024 33.9 4.9 59 199-257 211-286 (825)
292 PLN02569 threonine synthase 23.6 39 0.00084 35.3 1.2 27 139-177 49-75 (484)
293 PRK09107 acetolactate synthase 23.6 80 0.0017 33.6 3.6 26 32-57 200-225 (595)
294 TIGR03394 indol_phenyl_DC indo 23.6 90 0.0019 32.8 3.9 29 29-57 186-214 (535)
295 PRK11337 DNA-binding transcrip 23.5 1.3E+02 0.0028 28.6 4.7 57 195-251 181-238 (292)
296 PRK08527 acetolactate synthase 23.3 79 0.0017 33.3 3.5 28 31-58 190-217 (563)
297 PRK08617 acetolactate synthase 23.2 77 0.0017 33.2 3.4 26 31-56 188-213 (552)
298 TIGR03471 HpnJ hopanoid biosyn 23.1 2.7E+02 0.0059 28.6 7.3 68 195-262 62-138 (472)
299 PRK11302 DNA-binding transcrip 23.0 69 0.0015 30.2 2.7 27 32-59 116-142 (284)
300 TIGR02940 anfO_nitrog Fe-only 23.0 1.3E+02 0.0027 28.2 4.3 70 62-139 22-96 (214)
301 cd04795 SIS SIS domain. SIS (S 22.8 1.3E+02 0.0028 22.4 3.8 40 196-235 42-81 (87)
302 PF07754 DUF1610: Domain of un 22.8 56 0.0012 19.9 1.3 7 142-148 1-7 (24)
303 PF01927 Mut7-C: Mut7-C RNAse 22.7 49 0.0011 28.7 1.5 11 139-149 91-101 (147)
304 PRK09411 carbamate kinase; Rev 22.5 64 0.0014 31.6 2.4 67 37-126 168-234 (297)
305 KOG1718 Dual specificity phosp 22.5 61 0.0013 29.4 2.1 34 28-61 74-111 (198)
306 PRK07064 hypothetical protein; 22.3 80 0.0017 33.0 3.3 26 31-56 190-215 (544)
307 PRK08327 acetolactate synthase 22.2 85 0.0018 33.2 3.5 28 31-58 207-234 (569)
308 PRK07092 benzoylformate decarb 22.1 87 0.0019 32.7 3.5 27 31-57 193-219 (530)
309 TIGR00321 dhys deoxyhypusine s 21.8 2.7E+02 0.0057 27.4 6.5 62 29-124 29-93 (301)
310 PRK15482 transcriptional regul 21.8 82 0.0018 29.9 3.0 26 32-58 123-148 (285)
311 COG0423 GRS1 Glycyl-tRNA synth 21.7 61 0.0013 34.3 2.2 36 140-177 89-140 (558)
312 TIGR00274 N-acetylmuramic acid 21.7 1.1E+02 0.0023 29.8 3.8 54 198-251 123-177 (291)
313 cd05567 PTS_IIB_mannitol PTS_I 21.5 50 0.0011 25.7 1.2 15 45-59 1-15 (87)
314 COG4588 AcfC Accessory coloniz 21.5 52 0.0011 30.8 1.4 34 32-72 113-146 (252)
315 PRK08322 acetolactate synthase 21.5 92 0.002 32.5 3.5 26 31-56 183-208 (547)
316 cd02771 MopB_NDH-1_NuoG2-N7 Mo 21.4 91 0.002 31.8 3.4 69 196-264 140-239 (472)
317 TIGR00173 menD 2-succinyl-5-en 21.4 84 0.0018 31.9 3.1 27 31-57 198-224 (432)
318 PRK13936 phosphoheptose isomer 21.3 2E+02 0.0043 25.9 5.3 29 28-57 27-55 (197)
319 PRK06456 acetolactate synthase 21.2 93 0.002 32.8 3.5 27 31-57 194-220 (572)
320 PF10083 DUF2321: Uncharacteri 21.1 29 0.00063 30.8 -0.3 30 139-184 28-62 (158)
321 PRK01221 putative deoxyhypusin 21.0 2.5E+02 0.0054 27.8 6.1 28 97-124 72-102 (312)
322 COG4821 Uncharacterized protei 21.0 1.5E+02 0.0033 27.7 4.3 40 196-235 99-138 (243)
323 PRK06048 acetolactate synthase 20.9 96 0.0021 32.6 3.5 26 32-57 195-220 (561)
324 PRK06276 acetolactate synthase 20.9 99 0.0022 32.8 3.6 26 31-56 190-215 (586)
325 KOG2593 Transcription initiati 20.7 54 0.0012 33.7 1.5 38 140-179 129-166 (436)
326 TIGR03254 oxalate_oxc oxalyl-C 20.7 94 0.002 32.6 3.4 27 31-57 193-219 (554)
327 PRK05321 nicotinate phosphorib 20.7 2E+02 0.0044 29.4 5.7 81 180-267 309-394 (400)
328 PRK10892 D-arabinose 5-phospha 20.6 67 0.0015 31.1 2.1 35 22-56 24-58 (326)
329 cd05007 SIS_Etherase N-acetylm 20.6 1.1E+02 0.0025 28.9 3.7 53 198-250 115-168 (257)
330 PRK10886 DnaA initiator-associ 20.5 1E+02 0.0022 28.2 3.1 30 28-58 25-54 (196)
331 PRK12474 hypothetical protein; 20.4 97 0.0021 32.3 3.4 27 31-57 188-214 (518)
332 PRK04940 hypothetical protein; 20.4 86 0.0019 28.5 2.6 62 177-241 26-95 (180)
333 KOG4166 Thiamine pyrophosphate 20.4 1.3E+02 0.0027 31.4 4.0 69 197-265 361-438 (675)
334 PRK08978 acetolactate synthase 20.3 99 0.0021 32.4 3.4 27 31-57 183-209 (548)
335 TIGR00118 acolac_lg acetolacta 20.2 1E+02 0.0022 32.4 3.5 26 32-57 189-214 (558)
336 TIGR00393 kpsF KpsF/GutQ famil 20.1 1.6E+02 0.0035 27.3 4.6 55 197-251 43-98 (268)
337 PRK06546 pyruvate dehydrogenas 20.1 95 0.0021 32.9 3.3 26 31-56 188-213 (578)
338 PF03029 ATP_bind_1: Conserved 20.0 49 0.0011 31.0 1.0 39 213-251 9-49 (238)
No 1
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-79 Score=573.35 Aligned_cols=326 Identities=51% Similarity=0.827 Sum_probs=296.7
Q ss_pred CcccccccCCCcccCCCCCCcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCC
Q 018442 1 MSLGYAEKLSYREDVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGV 80 (356)
Q Consensus 1 ~~~~ya~~l~~~~~~g~~~~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~ 80 (356)
||+|||+|+|.|.++|++|++|.||++++++.++++||++|++|+++||+|||||||+||||||||++|+|++++.|+.
T Consensus 12 ~~v~~~~~~s~~~~~~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~- 90 (353)
T KOG1905|consen 12 MSVNYAHGLSIRLEKGKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD- 90 (353)
T ss_pred hhhhhhcccchhhhcccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccccccccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcc
Q 018442 81 PEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGM 160 (356)
Q Consensus 81 pe~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~ 160 (356)
.....|..|+|+.+||+|.+|.+.|.+++||||||||||.|+|+|+++++|+|||++.++|.+|..+|.++..+.+++.
T Consensus 91 -~~~~df~~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl 169 (353)
T KOG1905|consen 91 -KFGVDFSEARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGL 169 (353)
T ss_pred -ccCCchhhcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccc
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCcCCCCC------CCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE
Q 018442 161 KKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV 234 (356)
Q Consensus 161 ~~~~p~C~~p~------Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I 234 (356)
+.+.+.|...+ |.|.|++.++.|++.+|...|+.|.++.++||++|++||||+|.|..++|..+.++|+++++|
T Consensus 170 ~at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~iv 249 (353)
T KOG1905|consen 170 KATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIV 249 (353)
T ss_pred ccccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEE
Confidence 87766664333 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCcccc-cceeeeecccCCCCCCCcceeeEEEeeccCCCCCCCCce
Q 018442 235 NLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRV-DLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFV 313 (356)
Q Consensus 235 N~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (356)
|+|+|++|+.+++.|+|++|.||..||+.||++||.|++. |.+.+.+..+ ..-....+.|.+...++++-..+.+|+
T Consensus 250 NlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
T KOG1905|consen 250 NLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLS--RPGEEHTIPQPLLKNSVEETTKQEPFI 327 (353)
T ss_pred eCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccC--CCCccccccccccccccccCCCCCccc
Confidence 9999999999999999999999999999999999999984 5444433322 112456677888899999977788999
Q ss_pred eEEEeecCCCCchhhhccccCCceeee
Q 018442 314 QSVEVSFSDRPDLKTAILNKQPFKLKR 340 (356)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~f~~~~ 340 (356)
+.+. + .++.+++|.-.+
T Consensus 328 ~~~~----s------pi~~~~~~~~~~ 344 (353)
T KOG1905|consen 328 STIS----S------PILKGPRIRTPI 344 (353)
T ss_pred cccc----c------ccccCCCCcCCc
Confidence 8887 1 378888887653
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.8e-60 Score=447.86 Aligned_cols=227 Identities=36% Similarity=0.610 Sum_probs=203.7
Q ss_pred HHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCC-------CCCccccc--------cccCCCCHHHHHH
Q 018442 35 AELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGK-------GVPEASLP--------FDRAMPSITHMAL 99 (356)
Q Consensus 35 ~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~-------~~pe~~~~--------f~~a~P~~~H~aL 99 (356)
++++++|++|++|||+||||||++||||||||++|+|+...... ..|+..|. +.+++||.+|++|
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~Pn~~H~al 81 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIFPMLEAKPNLAHVLL 81 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhhcccccCCCCHHHHHH
Confidence 57899999999999999999999999999999999998543221 23444443 3488999999999
Q ss_pred HHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccc
Q 018442 100 VELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 179 (356)
Q Consensus 100 ~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~ 179 (356)
++|+++|++++||||||||||+|||. ++|+|+|||++..+|..|++.|..+.....+ ....+|+| |.|||.+||+
T Consensus 82 a~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C--p~Cgg~lrP~ 156 (244)
T PRK14138 82 AKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKL-EKSDVPRC--DDCSGLIRPN 156 (244)
T ss_pred HHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHH-hcCCCCCC--CCCCCeECCC
Confidence 99999999999999999999999995 7899999999999999999998776554432 23457999 7999999999
Q ss_pred eEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHH
Q 018442 180 VLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAG 259 (356)
Q Consensus 180 Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~ 259 (356)
|++|||.+|+..++.+.+++++|||+|||||||+|+|++++|..++++|+++|+||+++|+.+..+++.|+++++++|++
T Consensus 157 Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~ 236 (244)
T PRK14138 157 IVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANR 236 (244)
T ss_pred EEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 018442 260 VMRHLNL 266 (356)
Q Consensus 260 l~~~L~~ 266 (356)
||+.||.
T Consensus 237 l~~~~~~ 243 (244)
T PRK14138 237 VMSEGGI 243 (244)
T ss_pred HHHHhCC
Confidence 9998764
No 3
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.1e-60 Score=437.03 Aligned_cols=206 Identities=66% Similarity=1.042 Sum_probs=190.2
Q ss_pred CcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCCccccccccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcC
Q 018442 45 KHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSG 124 (356)
Q Consensus 45 k~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~pe~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG 124 (356)
|+|||+|||||||+||||||||++|+|+........|...|.|..++||.+|++|++|++.|++++||||||||||+|||
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~~~~~~~~~~~~~~~~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG 80 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSG 80 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCCccccChHHHhhhhcCCCCHHHHHHHHHHHCCCCceEEecCccchHhHcC
Confidence 68999999999999999999999999987554344466778899999999999999999999999999999999999999
Q ss_pred CCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCE
Q 018442 125 IPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADV 204 (356)
Q Consensus 125 ~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDL 204 (356)
++.++|+|+|||++..+|+.|+..|..+.....+.....+|+| |.||+.+||+||||||.+|+..++.+.+++++|||
T Consensus 81 ~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C--~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDl 158 (206)
T cd01410 81 LPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRC--HACGGILKDTIVDFGERLPPENWMGAAAAACRADL 158 (206)
T ss_pred cCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcC--CCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCE
Confidence 9989999999999999999999988777666555455678999 79999999999999999999999999999999999
Q ss_pred EEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEcc
Q 018442 205 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 252 (356)
Q Consensus 205 lLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~ 252 (356)
+|||||||+|+|+++|+..++++|+++|+||+++++.+..+|+.|+|+
T Consensus 159 llviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 159 FLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred EEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEeCC
Confidence 999999999999999999899999999999999999999999999885
No 4
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=8.7e-61 Score=453.78 Aligned_cols=217 Identities=35% Similarity=0.527 Sum_probs=190.2
Q ss_pred HHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCcccc-ccC-----CCCCCcccc-----------ccccCCCCHHHHHH
Q 018442 37 LAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTL-QRE-----GKGVPEASL-----------PFDRAMPSITHMAL 99 (356)
Q Consensus 37 la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~-~~~-----~~~~pe~~~-----------~f~~a~P~~~H~aL 99 (356)
|+++|++|++|||+|||||||+||||||||++|+|+. ... ....|+..| .+..++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 5789999999999999999999999999999999987 321 112344222 13479999999999
Q ss_pred HHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhc--------------------
Q 018442 100 VELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG-------------------- 159 (356)
Q Consensus 100 ~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~-------------------- 159 (356)
++|++.|++++||||||||||+|||+ ++|+|+|||++..+|..|++.|.++.....+.
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD 158 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence 99999999999999999999999998 68999999999999999999887654332110
Q ss_pred ------ccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEE
Q 018442 160 ------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVI 233 (356)
Q Consensus 160 ------~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~ 233 (356)
.....|+| |.|||.|||+||||||.+|++.++.+.+++++|||+|||||||+|+|++++|..+.++|+++|+
T Consensus 159 ~~~~~~~~~~~p~C--~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vii 236 (260)
T cd01409 159 LEDEQVAGFRVPEC--ERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAI 236 (260)
T ss_pred cchhhcccCCCCCC--CCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEE
Confidence 01236899 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcCCCCCCCccEEEEccHHHHH
Q 018442 234 VNLQQTPKDKKASLVVHAPVDKVI 257 (356)
Q Consensus 234 IN~~~t~~d~~~dl~I~g~~d~vl 257 (356)
||+++|+.|..+++.|+|+++++|
T Consensus 237 IN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 237 VNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred EcCCCCCCCccccEEEeCChhhhC
Confidence 999999999999999999999875
No 5
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=1e-59 Score=448.18 Aligned_cols=230 Identities=32% Similarity=0.480 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCC-CCccccccC--------CCCCCcccccc-------ccCCC
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGP-KGVWTLQRE--------GKGVPEASLPF-------DRAMP 92 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~-~G~w~~~~~--------~~~~pe~~~~f-------~~a~P 92 (356)
..+..++.++++|++|++|||+|||||||+||||||||+ +|+|+.+.. ....|+..|.| .+++|
T Consensus 13 ~~~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~~~f~~~p~~~~~~~~~~~~~~~a~P 92 (271)
T PTZ00409 13 TKSITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISSDYEIEL 92 (271)
T ss_pred cccccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccHHHHHHChHHHHHHHHHhhhcccCCC
Confidence 344678899999999999999999999999999999998 699986432 11235555544 26899
Q ss_pred CHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhh-c--ccCCCCcCCC
Q 018442 93 SITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETI-G--MKKTPRRCSD 169 (356)
Q Consensus 93 ~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~-~--~~~~~p~C~~ 169 (356)
|.+|++|++|++.|++.+||||||||||+|||. ++|+|+|||++..+|+.|++.|..+...... . ....+|+|
T Consensus 93 N~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C-- 168 (271)
T PTZ00409 93 NPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPEC-- 168 (271)
T ss_pred CHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCC--
Confidence 999999999999999999999999999999996 7899999999999999999887654332211 1 13346899
Q ss_pred CCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC-CCccEE
Q 018442 170 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLV 248 (356)
Q Consensus 170 p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d-~~~dl~ 248 (356)
| |||.|||+||+|||.+|++.++.+.+++++||++|||||||+|+|++.||..++++|+++|+||+++|+.+ ..+|+.
T Consensus 169 ~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~ 247 (271)
T PTZ00409 169 P-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYH 247 (271)
T ss_pred C-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEE
Confidence 6 99999999999999999999999999999999999999999999999999999999999999999999987 578999
Q ss_pred EEccHHHHHHHHHHHh
Q 018442 249 VHAPVDKVIAGVMRHL 264 (356)
Q Consensus 249 I~g~~d~vl~~l~~~L 264 (356)
|.|++++++. +++.|
T Consensus 248 i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 248 VRAKFSELAQ-ISDIL 262 (271)
T ss_pred EECcHHHHHH-HHHHh
Confidence 9999999995 44555
No 6
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.1e-58 Score=442.88 Aligned_cols=232 Identities=31% Similarity=0.459 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCC-----CCCCcc---cc--------ccccCCCCHH
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREG-----KGVPEA---SL--------PFDRAMPSIT 95 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~-----~~~pe~---~~--------~f~~a~P~~~ 95 (356)
..++.++++|++|++|||+|||||||+||||||||++|+|+..... ...+.. +| .+..++||++
T Consensus 7 ~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn~~ 86 (285)
T PRK05333 7 AALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPNAA 86 (285)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCCHH
Confidence 3456899999999999999999999999999999999999854321 111221 11 2357899999
Q ss_pred HHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhc----------------
Q 018442 96 HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG---------------- 159 (356)
Q Consensus 96 H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~---------------- 159 (356)
|++|++|++.|++++||||||||||+|||. ++|+|+|||++..+|++|++.|.++.....+.
T Consensus 87 H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (285)
T PRK05333 87 HHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPD 164 (285)
T ss_pred HHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCCC
Confidence 999999999999999999999999999995 78999999999999999998887653322110
Q ss_pred ----------ccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCC
Q 018442 160 ----------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGG 229 (356)
Q Consensus 160 ----------~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~ 229 (356)
....+|+| |.|||.|||+|++|||.+|++.++.+.+++++||++||||||+.|.|++.++..+.++|+
T Consensus 165 ~~~~~~~~~~~~~~iP~C--~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~ 242 (285)
T PRK05333 165 GDADLEWAAFDHFRVPAC--PACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGK 242 (285)
T ss_pred ccccccccccccCCCCCC--CCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCC
Confidence 01246999 799999999999999999999999999999999999999999999999999988988899
Q ss_pred eEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhccC
Q 018442 230 KIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 230 ~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
++|+||+++++.+..+++.|.|+++++|+.|++.|++.
T Consensus 243 ~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 243 PIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred eEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999863
No 7
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=4.7e-59 Score=437.25 Aligned_cols=228 Identities=36% Similarity=0.580 Sum_probs=203.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccc-cccC--------CCCCCcccccc--------ccCCCCHHH
Q 018442 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWT-LQRE--------GKGVPEASLPF--------DRAMPSITH 96 (356)
Q Consensus 34 i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~-~~~~--------~~~~pe~~~~f--------~~a~P~~~H 96 (356)
+++++++|++|++|||+|||||||+|||||||+.+|+|. ..+. ....|+..|.| ..++||.+|
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~~~~~a~Pn~~H 81 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERLRLLYLAQPNKAH 81 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 578999999999999999999999999999999999998 4432 12245555654 458999999
Q ss_pred HHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCC-c
Q 018442 97 MALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS-R 175 (356)
Q Consensus 97 ~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg-~ 175 (356)
++|++|++.|++++||||||||||+|||+ ++|+||||++...+|..|+..|..+...... ....+|+| |+||+ .
T Consensus 82 ~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C--~~Cg~~~ 156 (250)
T COG0846 82 YALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFI-EDGLIPRC--PKCGGPV 156 (250)
T ss_pred HHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhc-ccCCCCcC--ccCCCcc
Confidence 99999999999999999999999999999 5999999999999999999888755532221 12257999 79999 9
Q ss_pred cccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHH
Q 018442 176 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDK 255 (356)
Q Consensus 176 lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~ 255 (356)
|||+||||||.+|.+.++.+.+.+++||++|++|||+.|+|++.+|..++++|+++++||+++++.+..+|+.|++++.+
T Consensus 157 lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~ 236 (250)
T COG0846 157 LRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGE 236 (250)
T ss_pred ccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 018442 256 VIAGVMRHLNL 266 (356)
Q Consensus 256 vl~~l~~~L~~ 266 (356)
+++.+++.+..
T Consensus 237 ~~~~l~~~~~~ 247 (250)
T COG0846 237 VLPLLLEELLK 247 (250)
T ss_pred HHHHHHHHhhh
Confidence 99999987743
No 8
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=1.1e-58 Score=433.58 Aligned_cols=212 Identities=28% Similarity=0.493 Sum_probs=185.1
Q ss_pred CcEEEEeCCCcCccCCCCCccCCC-CccccccC-CC-------------CCCcccccc------ccCCCCHHHHHHHHHH
Q 018442 45 KHLVAFTGAGISTSCGIPDFRGPK-GVWTLQRE-GK-------------GVPEASLPF------DRAMPSITHMALVELE 103 (356)
Q Consensus 45 k~Ivv~TGAGISt~sGIPdFR~~~-G~w~~~~~-~~-------------~~pe~~~~f------~~a~P~~~H~aL~~L~ 103 (356)
|+|||+|||||||+||||||||++ |+|+.... +. ..|+.+|.| .+++||.+|++|++|+
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pn~~H~~la~L~ 80 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELYPGQFKPSVAHYFIKLLE 80 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHhcCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 99985322 11 123323322 4799999999999999
Q ss_pred HcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEec
Q 018442 104 KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDW 183 (356)
Q Consensus 104 ~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~f 183 (356)
++|++++||||||||||+|||++.++|+|+|||++..+|..|++.|.++.....+. ....|+| |.|||.|||+|++|
T Consensus 81 ~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cgg~lrP~Vv~F 157 (235)
T cd01408 81 DKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF-NQEVPKC--PRCGGLVKPDIVFF 157 (235)
T ss_pred hcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-CCCCccC--CCCCCCccCcEEEC
Confidence 99999999999999999999999899999999999999999999887765443332 2347999 79999999999999
Q ss_pred CCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHH
Q 018442 184 EDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGV 260 (356)
Q Consensus 184 gE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l 260 (356)
||.+|++.++.+.+++++|||+|||||||+|+|++.+|..++ .|+++|+||+++++.+ ..+|+.|+|+++++|++|
T Consensus 158 GE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 158 GESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 999999888889899999999999999999999999997776 5899999999999988 889999999999999864
No 9
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.2e-58 Score=430.66 Aligned_cols=223 Identities=41% Similarity=0.671 Sum_probs=200.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc--------ccCCCCHHH
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF--------DRAMPSITH 96 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f--------~~a~P~~~H 96 (356)
++++++++|++|++|||+|||||||+|||||||+.+|+|+.... ....|+..|.| .+++||++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~~~~Pn~~H 81 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARDPELVWKFYNERRRQLLDAKPNAAH 81 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHHHhccHHHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Confidence 57899999999999999999999999999999999999974321 11235555543 479999999
Q ss_pred HHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 97 MALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 97 ~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
++|++|++.|++++||||||||||++||. ++|+|+||+++..+|+.|++.|..+... ....|+| |.|||.+
T Consensus 82 ~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~-----~~~~p~C--~~Cgg~l 152 (242)
T PRK00481 82 RALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYL-----KPEPPRC--PKCGGIL 152 (242)
T ss_pred HHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhc-----cCCCCCC--CCCCCcc
Confidence 99999999999999999999999999996 7999999999999999999988766543 2337889 7999999
Q ss_pred ccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHH
Q 018442 177 KDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKV 256 (356)
Q Consensus 177 rp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~v 256 (356)
||+|++|||.+|+..++.+.++++++||+|||||||+|.|+++++..++++|+++|+||++++..+..+++.|.|+++++
T Consensus 153 rP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~ 232 (242)
T PRK00481 153 RPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEV 232 (242)
T ss_pred CCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHH
Confidence 99999999999999899999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 018442 257 IAGVMRHL 264 (356)
Q Consensus 257 l~~l~~~L 264 (356)
|++|+++|
T Consensus 233 l~~l~~~~ 240 (242)
T PRK00481 233 VPELVEEL 240 (242)
T ss_pred HHHHHHHh
Confidence 99999876
No 10
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=5.5e-57 Score=418.76 Aligned_cols=206 Identities=40% Similarity=0.639 Sum_probs=182.4
Q ss_pred HHhCCcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc--------ccCCCCHHHHHHHHHHH
Q 018442 41 IKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF--------DRAMPSITHMALVELEK 104 (356)
Q Consensus 41 i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f--------~~a~P~~~H~aL~~L~~ 104 (356)
|++|++|||+||||||++|||||||+++|+|+.+.. ....|+..|.| ..++||.+|++|++|++
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~ 80 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEIILGLLEAQPNKAHYFLAELEK 80 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHh
Confidence 467999999999999999999999999999975431 12234444433 47999999999999999
Q ss_pred cCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecC
Q 018442 105 AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWE 184 (356)
Q Consensus 105 ~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fg 184 (356)
.|++.+||||||||||+|||. ++|+|+||+++..+|+.|++.|.++.. ..+ .....|+| |.|||.|||+|++||
T Consensus 81 ~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~-~~~-~~~~~p~C--~~Cgg~lrP~Vv~fg 154 (222)
T cd01413 81 QGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEV-KYA-KKHEVPRC--PKCGGIIRPDVVLFG 154 (222)
T ss_pred cCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHH-HHh-ccCCCCcC--CCCCCccCCCEEECC
Confidence 999999999999999999995 799999999999999999998876643 212 23457999 789999999999999
Q ss_pred CCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEcc
Q 018442 185 DALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 252 (356)
Q Consensus 185 E~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~ 252 (356)
|.+|++.++++.+++++|||+|||||||+|+|++.||..++++|+++|+||+++++.+..+++.|+|+
T Consensus 155 E~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 155 EPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 11
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=3.3e-56 Score=434.16 Aligned_cols=232 Identities=25% Similarity=0.378 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCCCcCccCCCCCccCC-CCcccccc-CCCC-------------CCcccccc------
Q 018442 31 QQKIAELAVMIKK--SKHLVAFTGAGISTSCGIPDFRGP-KGVWTLQR-EGKG-------------VPEASLPF------ 87 (356)
Q Consensus 31 ~~~i~~la~~i~~--ak~Ivv~TGAGISt~sGIPdFR~~-~G~w~~~~-~~~~-------------~pe~~~~f------ 87 (356)
+.+++.++++|++ +++|||+|||||||+|||||||++ +|+|+... .... .|+.+|.|
T Consensus 14 ~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~~~ 93 (349)
T PTZ00410 14 EPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDL 93 (349)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHhhc
Confidence 4668899999998 679999999999999999999999 59998532 2211 23333322
Q ss_pred --ccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCC
Q 018442 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPR 165 (356)
Q Consensus 88 --~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p 165 (356)
..++||.+|++|+.|++.|++.+||||||||||++||++.++|+|+||+++..+|..|++.|..+.....+ ....+|
T Consensus 94 ~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~-~~~~vP 172 (349)
T PTZ00410 94 WPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA-RSGKVP 172 (349)
T ss_pred ccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh-hcCCCC
Confidence 25899999999999999999999999999999999999989999999999999999999988766544333 234579
Q ss_pred cCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC---
Q 018442 166 RCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--- 242 (356)
Q Consensus 166 ~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--- 242 (356)
+| |.|||.|||+||+|||.+|+..++ +.+++++|||+|||||||+|+|++.+|..+. +++++|+||++++...
T Consensus 173 ~C--~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r 248 (349)
T PTZ00410 173 HC--STCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFR 248 (349)
T ss_pred CC--CCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccCCceee
Confidence 99 789999999999999999998887 8899999999999999999999999997776 6799999999965321
Q ss_pred ----------------------------------------------------CCccEEEEccHHHHHHHHHHHhccC
Q 018442 243 ----------------------------------------------------KKASLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 243 ----------------------------------------------------~~~dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
...|+...|+||+-+..|++.|||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 249 FPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred ccCCccccchhhhhhhcccCccccccccccccccccccccccccccccCccccccceeecccchHHHHHHHHHhCcH
Confidence 1467889999999999999999985
No 12
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.3e-56 Score=416.73 Aligned_cols=211 Identities=25% Similarity=0.423 Sum_probs=181.6
Q ss_pred HhCCcEEEEeCCCcCccCCCCCccCCCCccccccC-C-------CCCCcccccc----------ccCCCCHHHHHHHHHH
Q 018442 42 KKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE-G-------KGVPEASLPF----------DRAMPSITHMALVELE 103 (356)
Q Consensus 42 ~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~-~-------~~~pe~~~~f----------~~a~P~~~H~aL~~L~ 103 (356)
++|++|||+|||||||+||||||||++|+|+.... . ...|+..|.| ..++||.+|++|++|+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~~~Pn~~H~~L~~Le 81 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERRRALLSSSVKPNKAHFALAKLE 81 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCChhhcCCHHHHHhCHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999975432 1 1224433433 3689999999999999
Q ss_pred Hc--CCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCC--Cccccc
Q 018442 104 KA--GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCG--SRLKDT 179 (356)
Q Consensus 104 ~~--g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cg--g~lrp~ 179 (356)
+. |++++||||||||||+|||. ++|+|+||+++.++|+.|++.|..+.... ...|+| |.|| |.+||+
T Consensus 82 ~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C--~~Cg~~g~lrP~ 152 (242)
T PTZ00408 82 REYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRC--KCCGCVGTLRPH 152 (242)
T ss_pred HhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCcc--ccCCCCCCCCCC
Confidence 86 88899999999999999996 68999999999999999998886554321 236899 6787 999999
Q ss_pred eEecCC-CCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHH
Q 018442 180 VLDWED-ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 258 (356)
Q Consensus 180 Vv~fgE-~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~ 258 (356)
||+||| .+|.+.++ +.+++|||+|||||||+|+|+++||..++++|+++|+||++++..+..+++.|.|++.++|+
T Consensus 153 vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~ 229 (242)
T PTZ00408 153 IVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVP 229 (242)
T ss_pred EEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHH
Confidence 999999 77765555 44889999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHh
Q 018442 259 GVMRHL 264 (356)
Q Consensus 259 ~l~~~L 264 (356)
+|++++
T Consensus 230 ~l~~~~ 235 (242)
T PTZ00408 230 AWVDRV 235 (242)
T ss_pred HHHHHH
Confidence 998876
No 13
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=6.1e-56 Score=412.55 Aligned_cols=206 Identities=33% Similarity=0.543 Sum_probs=181.8
Q ss_pred HHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCcccccc--CC---------CCCCccccc-------cccCCCCHHHHH
Q 018442 37 LAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQR--EG---------KGVPEASLP-------FDRAMPSITHMA 98 (356)
Q Consensus 37 la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~--~~---------~~~pe~~~~-------f~~a~P~~~H~a 98 (356)
|+++|++|++|||+|||||||+|||||||+++|+|+... .. ...|+..|. +.+++||.+|++
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~ 80 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENLYFPDAKPNIIHQK 80 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHhhCCCCCCCHHHHH
Confidence 478899999999999999999999999999999998642 10 122444442 358899999999
Q ss_pred HHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 99 LVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 99 L~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
|++|++.| +++||||||||||++||. ++|+|+||+++..+|+.|++.|..+.. ...|+| |.|||.|||
T Consensus 81 La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~-------~~~p~C--~~Cgg~lrP 148 (225)
T cd01411 81 MAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEY-------LKSPYH--AKCGGVIRP 148 (225)
T ss_pred HHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhc-------CCCCCC--CCCCCEeCC
Confidence 99999988 889999999999999995 789999999999999999988765422 136899 789999999
Q ss_pred ceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHH
Q 018442 179 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKV 256 (356)
Q Consensus 179 ~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~v 256 (356)
+|++|||.+|.+.++.+.++++++||+|+|||||.|.|+++++..++ +|+++|+||+++++.+..+++.|+| ++++
T Consensus 149 ~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~ 224 (225)
T cd01411 149 DIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKV 224 (225)
T ss_pred CEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhh
Confidence 99999999999999999999999999999999999999999986654 7999999999999999999999999 8875
No 14
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=2.8e-55 Score=407.40 Aligned_cols=208 Identities=36% Similarity=0.564 Sum_probs=185.2
Q ss_pred CcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc--------ccCCCCHHHHHHHHHHHcCCc
Q 018442 45 KHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF--------DRAMPSITHMALVELEKAGIL 108 (356)
Q Consensus 45 k~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f--------~~a~P~~~H~aL~~L~~~g~l 108 (356)
++|||+|||||||+|||||||+++|+|+.... ....|+..|.| ..++||.+|++|++|++.+++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~~~~~~~~~~f~~~p~~~w~f~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKALRAQPNPAHLALAELERRLPN 80 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCChhhcCCHHHHHHCHHHHHHHHHHHHHHccccCCCHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999975321 12235554544 478999999999999999989
Q ss_pred eEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCC
Q 018442 109 KFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALP 188 (356)
Q Consensus 109 ~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp 188 (356)
++||||||||||++||+ ++|+|+||+++.++|..|++.+..+... ....+|+| |.|||.+||+|++|||.+|
T Consensus 81 ~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~----~~~~~p~C--~~Cgg~lrp~Vv~fge~~p 152 (224)
T cd01412 81 VLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI----PEEELPRC--PKCGGLLRPGVVWFGESLP 152 (224)
T ss_pred eEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh----hccCCCCC--CCCCCccCCceEECCCCCH
Confidence 99999999999999999 8999999999999999999888665221 23458999 7999999999999999999
Q ss_pred hhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHH
Q 018442 189 PVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVM 261 (356)
Q Consensus 189 ~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~ 261 (356)
+ .++.+.++++++||+|||||||+|.|+.+++..++++|+++|+||++++..++.+++.|+|+++++|++|+
T Consensus 153 ~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 153 L-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred H-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 9 88999999999999999999999999999998888899999999999999999999999999999999873
No 15
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=6.6e-55 Score=403.60 Aligned_cols=202 Identities=47% Similarity=0.744 Sum_probs=179.6
Q ss_pred CcEEEEeCCCcCccCCCCCccCCCCccccccC-C--------CCCCcccccc-------ccCCCCHHHHHHHHHHHcCCc
Q 018442 45 KHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE-G--------KGVPEASLPF-------DRAMPSITHMALVELEKAGIL 108 (356)
Q Consensus 45 k~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~-~--------~~~pe~~~~f-------~~a~P~~~H~aL~~L~~~g~l 108 (356)
|+|||+|||||||+|||||||+++|+|+.... . ...|+..|.| ..++||.+|++|++|++.|++
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPLNAQPNPAHRALAELERKGKL 80 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCChhhccCCHHHHHHCHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999986542 1 1235555544 379999999999999999999
Q ss_pred eEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCC
Q 018442 109 KFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALP 188 (356)
Q Consensus 109 ~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp 188 (356)
++||||||||||++||++ +|+|+||+++.++|+.|++.+..+.....+ ....+|+| |.||+.|||+|++|||.+|
T Consensus 81 ~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C--~~Cg~~lrP~Vv~fgE~~p 155 (218)
T cd01407 81 KRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADI-DREEVPRC--PKCGGLLRPDVVFFGESLP 155 (218)
T ss_pred eeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhh-ccCCCCcC--CCCCCccCCCeEECCCCCc
Confidence 999999999999999995 999999999999999999988766433222 34568999 7999999999999999999
Q ss_pred hhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEcc
Q 018442 189 PVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 252 (356)
Q Consensus 189 ~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~ 252 (356)
+. ++++.++++++||+|||||||.|.|+++++..+.++|+++|+||+++++.+..+|+.|+|+
T Consensus 156 ~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 156 EE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred HH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEeCC
Confidence 98 9999999999999999999999999999999888899999999999999999999999885
No 16
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.4e-50 Score=366.18 Aligned_cols=232 Identities=30% Similarity=0.486 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHh--CCcEEEEeCCCcCccCCCCCccCCC-Cccc-cccCCCCCCcccc----------cc---------c
Q 018442 32 QKIAELAVMIKK--SKHLVAFTGAGISTSCGIPDFRGPK-GVWT-LQREGKGVPEASL----------PF---------D 88 (356)
Q Consensus 32 ~~i~~la~~i~~--ak~Ivv~TGAGISt~sGIPdFR~~~-G~w~-~~~~~~~~pe~~~----------~f---------~ 88 (356)
-.++++|++|++ +++|+|+.||||||+|||||||+|. |+|+ +++..++.||..+ +| .
T Consensus 22 l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyPg 101 (314)
T KOG2682|consen 22 LTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYPG 101 (314)
T ss_pred hhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCCC
Confidence 457899999994 5799999999999999999999997 9997 5666666666422 12 4
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccC-CCCCccchhhHHHhhcccCCCCcC
Q 018442 89 RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICP-SCGVEYMRDFEIETIGMKKTPRRC 167 (356)
Q Consensus 89 ~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~-~C~~~y~~d~~~~~~~~~~~~p~C 167 (356)
+.+||.+||+|+.|.++|.++++||||||+|++.||+|.+.++|.||++...+|. .|++.|..++....+. ....|+|
T Consensus 102 nfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~-~~~vpkC 180 (314)
T KOG2682|consen 102 NFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM-SEVVPKC 180 (314)
T ss_pred CcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH-hccCCCC
Confidence 7899999999999999999999999999999999999999999999999999999 6999998888776664 4557899
Q ss_pred CCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCC----CC
Q 018442 168 SDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK----DK 243 (356)
Q Consensus 168 ~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~----d~ 243 (356)
+.|+|.++|+||||||.+|..+++-...+...+||+|||||||+|+|++.||..+...-.+ +.||++...- .+
T Consensus 181 --~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~R-lLiNre~~Gp~~~~~r 257 (314)
T KOG2682|consen 181 --EVCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKVPLSVPR-LLINREKAGPFLGMIR 257 (314)
T ss_pred --chhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhhhhcCce-eEecccccCccccCcc
Confidence 6899999999999999999999999999999999999999999999999999888765544 5899998762 35
Q ss_pred CccEEEEccHHHHHHHHHHHhccC
Q 018442 244 KASLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 244 ~~dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
..|+.+.|+||+.+..|++.|||.
T Consensus 258 ~rDv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 258 YRDVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred cccchhhccHHHHHHHHHHHhCcH
Confidence 689999999999999999999985
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=4.4e-49 Score=363.98 Aligned_cols=202 Identities=48% Similarity=0.723 Sum_probs=178.2
Q ss_pred CcEEEEeCCCcCccCCCCCccCCC-CccccccCCC---------CCCcccccc--------ccCCCCHHHHHHHHHHHcC
Q 018442 45 KHLVAFTGAGISTSCGIPDFRGPK-GVWTLQREGK---------GVPEASLPF--------DRAMPSITHMALVELEKAG 106 (356)
Q Consensus 45 k~Ivv~TGAGISt~sGIPdFR~~~-G~w~~~~~~~---------~~pe~~~~f--------~~a~P~~~H~aL~~L~~~g 106 (356)
|+|||+||||||++|||||||+.. |+|+...... ..|+..|.| ..++||.+|++|++|++.|
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~l~~l~~~~ 80 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYTPLDAKPNPAHRALAELERKG 80 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHhhhCcCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999999 9998543211 123333332 4799999999999999999
Q ss_pred CceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCC
Q 018442 107 ILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDA 186 (356)
Q Consensus 107 ~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~ 186 (356)
++++||||||||||++||++.++|+|+||++...+|..|++.|..+..... ...|+| |.||+.+||+|++|||.
T Consensus 81 ~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C--~~C~~~l~p~v~~fge~ 154 (222)
T cd00296 81 KLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRC--PKCGGLLRPDVVDFGEA 154 (222)
T ss_pred CCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCC--CCCCCcccCceEECCCC
Confidence 999999999999999999998899999999999999999988766554432 568999 79999999999999999
Q ss_pred CChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEcc
Q 018442 187 LPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAP 252 (356)
Q Consensus 187 lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~ 252 (356)
+|+..+..+.+++.++|++|+|||||+|+|+..++..+.++++++++||++++..+ ..+++.++|+
T Consensus 155 ~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 155 LPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 99988889999999999999999999999999999888889999999999999999 7888888764
No 18
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.8e-48 Score=379.24 Aligned_cols=240 Identities=25% Similarity=0.391 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCcccccc-CCCCCCcccc----------cc---------ccCC
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQR-EGKGVPEASL----------PF---------DRAM 91 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~-~~~~~pe~~~----------~f---------~~a~ 91 (356)
+.++.+..++++||+|||+||||||+++|||||||.+|+|...+ .+...|+..+ .| ....
T Consensus 76 ~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~~~~~ 155 (412)
T KOG2684|consen 76 NTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELKPPSNN 155 (412)
T ss_pred ccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhcCCccC
Confidence 35778889999999999999999999999999999999997433 3333333211 11 3566
Q ss_pred CCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCC
Q 018442 92 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVK 171 (356)
Q Consensus 92 P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~ 171 (356)
|++.|.+|+.|+++|++.++||||||||+++||+...++++|||++....|.+|+..+..+...+ .-.....|.| |.
T Consensus 156 ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~-~~~~~~vp~C--P~ 232 (412)
T KOG2684|consen 156 PSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELRE-DIRNQEVPVC--PD 232 (412)
T ss_pred CchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHH-HHhcCcCccC--cc
Confidence 99999999999999999999999999999999998888999999999999999998776663333 2234567889 78
Q ss_pred CCC------------------ccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEE
Q 018442 172 CGS------------------RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVI 233 (356)
Q Consensus 172 Cgg------------------~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~ 233 (356)
|.+ .|||+|+||||.+|+.+..........+||+|||||||.|+|+++++....+ ..+.|.
T Consensus 233 C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~~-~vpqIl 311 (412)
T KOG2684|consen 233 CEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFPA-KVPQIL 311 (412)
T ss_pred cccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhhcc-cCcEEE
Confidence 865 8999999999999999988888888889999999999999999999855443 457889
Q ss_pred EcCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCcccccc
Q 018442 234 VNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDL 276 (356)
Q Consensus 234 IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~~~ 276 (356)
||.++.+ ...+|+.+.++||++...+.+.+|+.+|.-...+.
T Consensus 312 iNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~~l 353 (412)
T KOG2684|consen 312 INRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKPLLSLNDL 353 (412)
T ss_pred ecCcccc-ccccChhhccchHHHHHHHHhhccccchHhhhhhh
Confidence 9999543 45789999999999999999999999887666554
No 19
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.4e-48 Score=352.75 Aligned_cols=232 Identities=30% Similarity=0.457 Sum_probs=199.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCC-Ccccccc-CCCC------C---Ccc-------cc
Q 018442 24 FDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPK-GVWTLQR-EGKG------V---PEA-------SL 85 (356)
Q Consensus 24 ~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~-G~w~~~~-~~~~------~---pe~-------~~ 85 (356)
.+.++..+++|.+|..+|..+++++|+|||||||+|||||||+++ |+|..-. .... . .+. .|
T Consensus 25 P~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rSs~~RqRYWaRnf~gW 104 (305)
T KOG2683|consen 25 PHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRSSRCRQRYWARNFVGW 104 (305)
T ss_pred CCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhhhHHHHHHHHHhhcCc
Confidence 344567789999999999999999999999999999999999999 9996221 1000 0 011 12
Q ss_pred -ccccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHh-------
Q 018442 86 -PFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIET------- 157 (356)
Q Consensus 86 -~f~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~------- 157 (356)
.|..++||++|+||+.|++.|+++++||||||+||.|||. +++.|+||+.....|..|+....|+.--+.
T Consensus 105 prFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~ 182 (305)
T KOG2683|consen 105 PRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPG 182 (305)
T ss_pred chhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCcc
Confidence 4789999999999999999999999999999999999997 689999999999999999977665421110
Q ss_pred -----hc---cc--------------CCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCcc
Q 018442 158 -----IG---MK--------------KTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQIT 215 (356)
Q Consensus 158 -----~~---~~--------------~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~ 215 (356)
.. .. =.+|.| ++|||.|+|+|+||||+++.+..+.+.+..++||-+|++||||.|.
T Consensus 183 fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC--~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~ 260 (305)
T KOG2683|consen 183 FKEAIVSPGHQRPDGDVELPLEFEEGFQIPEC--EKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVL 260 (305)
T ss_pred hhhhccCccccCCCCCeecchhhhhcccCCcc--cccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHH
Confidence 00 00 126999 7999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHH
Q 018442 216 PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAG 259 (356)
Q Consensus 216 P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~ 259 (356)
...++.+.+...+.++.|||..+|..|..+++.|...|.+||++
T Consensus 261 Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 261 SGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKE 304 (305)
T ss_pred HHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhc
Confidence 99999999999999999999999999999999999999999875
No 20
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=1.3e-47 Score=344.28 Aligned_cols=159 Identities=48% Similarity=0.811 Sum_probs=125.4
Q ss_pred CCCcCccCCCCCccC-CCCccccccC-CCCCC-------ccccc-c---------ccCCCCHHHHHHHHHHHcCCceEEE
Q 018442 52 GAGISTSCGIPDFRG-PKGVWTLQRE-GKGVP-------EASLP-F---------DRAMPSITHMALVELEKAGILKFVI 112 (356)
Q Consensus 52 GAGISt~sGIPdFR~-~~G~w~~~~~-~~~~p-------e~~~~-f---------~~a~P~~~H~aL~~L~~~g~l~~vi 112 (356)
||||||+|||||||| ++|+|+.... ....+ ...|. | ..++||.+|++|++|++.|++++||
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~Pn~~H~~La~L~~~g~~~~vi 80 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKPEELATPEAFFSDPEFVWEKFYRFRRKVISKDAEPNPGHRALAELEKKGKLKRVI 80 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHCTCTS---HHHHHHHHHHHTTSEEEEE
T ss_pred CCccchhhCCCccccCCCCcceeeeccccccccccccccchhhhHHHHHhhhhccccCCCChhHHHHHHHHHhhhhccce
Confidence 899999999999999 9999986442 11222 11222 1 3899999999999999999999999
Q ss_pred eccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhch
Q 018442 113 SQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEM 192 (356)
Q Consensus 113 TQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~ 192 (356)
||||||||++||++ +|+|+|||++..+|..|++.|..+.....+ .....|+| |.||+.|||+||+|||.+| +.+
T Consensus 81 TQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~-~~~~~~~C--~~C~~~lrp~vv~fgE~~~-~~~ 154 (178)
T PF02146_consen 81 TQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSI-DEEEPPRC--PKCGGLLRPDVVLFGESLP-EEI 154 (178)
T ss_dssp ES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHH-HTTSSCBC--TTTSCBEEEEE--BTSB-S-HHH
T ss_pred ecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhcccc-cccccccc--cccCccCCCCeeecCCCCH-HHH
Confidence 99999999999995 999999999999999999998776655444 34457799 7999999999999999999 778
Q ss_pred HHHHHHhccCCEEEEEccCCCccc
Q 018442 193 NPAEENCRMADVVLCLGTSLQITP 216 (356)
Q Consensus 193 ~~a~~~~~~aDLlLvlGTSl~V~P 216 (356)
..+.+++++|||+|+|||||+|+|
T Consensus 155 ~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 155 EEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp HHHHHHHHH-SEEEEESS-STSTT
T ss_pred HHHHHHHHcCCEEEEEccCcEEEC
Confidence 999999999999999999999998
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.62 E-value=3.1e-08 Score=92.87 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=53.6
Q ss_pred CcEEEEeCCCcCccCCCCCccCC-CCccccccCCC--------C------------------CCcc-----ccccccCCC
Q 018442 45 KHLVAFTGAGISTSCGIPDFRGP-KGVWTLQREGK--------G------------------VPEA-----SLPFDRAMP 92 (356)
Q Consensus 45 k~Ivv~TGAGISt~sGIPdFR~~-~G~w~~~~~~~--------~------------------~pe~-----~~~f~~a~P 92 (356)
.++|++.|||+|+++|+|++++- ..++....... . ..+. ...-...+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47899999999999999998753 12221100000 0 0000 001136789
Q ss_pred CHHHHHHHHHHHcCC-ceEEEeccccchHhhc
Q 018442 93 SITHMALVELEKAGI-LKFVISQNVDSLHLRS 123 (356)
Q Consensus 93 ~~~H~aL~~L~~~g~-l~~viTQNIDgLh~rA 123 (356)
+..|.+|+.|-..+. ...|||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999987654 6689999999999987
No 22
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.52 E-value=0.05 Score=57.41 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=52.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+...+++|||+|+||+.+.=.... +..... +.. +|-|+.++....+ ..++.|.||+..+|++|.+.+.-
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~-~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~ 330 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFAP-PAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP 330 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhCC-cCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence 4566788999999999998744433 211222 222 8889988876664 58999999999999999988854
No 23
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=96.49 E-value=0.009 Score=50.87 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHH
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 260 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l 260 (356)
.+.+.+++||++|++|+++.-....... .......++|.|+.++....+ ..++.|.||+..+|++|
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSDFNTYGFS-PAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSSTTTTTTTT-GCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccccccc-cccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 5567789999999999998543332221 122233499999999988764 46899999999998875
No 24
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.43 E-value=0.091 Score=55.47 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=52.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+|||++.......+. ....+.++|.||.++....+ ..++.|.||+..+|+.|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLA--KYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChh--hcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 4556788999999999998765433221 12235689999998876554 5789999999999999988774
No 25
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.41 E-value=0.089 Score=55.54 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=53.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++|||+|+||+++.......+.. ...+.++|.||..+....+ ..++.|.||+..+|+.|++.|..
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEK--YCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDE 337 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhh
Confidence 45567889999999999987654333211 2235689999998776543 57999999999999999988753
No 26
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.23 E-value=0.11 Score=54.85 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=52.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||+++.......+.. .....++|.||.++..... ..++.|.+|+.++|+.|++.|.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAK--YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 34567889999999999987655433321 2345689999988765443 5789999999999999998774
No 27
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.22 E-value=0.11 Score=55.25 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=52.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||+++.......+.. ...+.++|.||.++....+ ..++.|.||+..+|++|++.|.
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDA--FSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 34567889999999999986543322211 2245679999998876543 5789999999999999998774
No 28
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.19 E-value=0.1 Score=55.46 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHh
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L 264 (356)
.+.+.+++|||+|++|++|.......... ...+.++|.||.++....+ ..++.|.||+..+|++|.+.+
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 34567889999999999987544333211 2346789999988776543 578999999999999998876
No 29
>PRK08322 acetolactate synthase; Reviewed
Probab=94.19 E-value=0.12 Score=54.07 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+...+++|||+|++|+++.-.+...+. ...+.++|.||.++...+. ..++.|.||+..+|++|.+.+.
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 3456788999999999998765543331 2345789999998776543 5789999999999999988774
No 30
>PRK07524 hypothetical protein; Provisional
Probab=94.18 E-value=0.082 Score=55.23 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=52.3
Q ss_pred HHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 018442 193 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 193 ~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
..+.+.+++|||+|++|+++........-......+.++|.||.++....+ ..++.|.||+.++|++|.+.+..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 456677889999999999985433211000012235779999988765433 57899999999999999988754
No 31
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.03 E-value=0.12 Score=55.13 Aligned_cols=70 Identities=11% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+|||++.......+.. ...+.++|.||.++.... ...++.|.+|+..+|++|.+.+.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDE--FASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhh--cCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999986443322211 234578999998876544 35789999999999999998874
No 32
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=94.00 E-value=0.16 Score=53.88 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=51.2
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~--d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+...+.+|||+|++|+++.......+. ....+.++|.||.++... ....++.|.+|+..+|+.|.+.|.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLD--EFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHh--HcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 445678999999999998654332221 123467899999887643 345689999999999999998775
No 33
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.94 E-value=0.12 Score=54.99 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=51.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~--d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+++.......+.. ..++.++|.||.++... ....++.|.||+.++|+.|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~--~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDS--FAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999987543222211 22456789999987543 346799999999999999988774
No 34
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.87 E-value=0.14 Score=53.93 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=51.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+.+|||+|+||+++.......+. ......++|.||.++.... ...++.|.+|+.++|+.|.+.+.-
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDDRVTGKLS--EFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKE 334 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCChh--hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhh
Confidence 3445788999999999998654332221 1233568999998876544 356899999999999999987743
No 35
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.80 E-value=0.14 Score=54.00 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=52.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++||++|++|+++.......+.. ...+.++|.||..+....+ ..++.|.+|+..+|+.|...|+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~--~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAK--FCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 34567889999999999987654333211 2235689999998776554 5789999999999999988774
No 36
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.69 E-value=0.18 Score=52.81 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=51.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+++.-.....+. ...+.++|.||.++....+ ..++.|.||+..+|+.|.+.+.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 3456788999999999997643322221 1224689999999876543 5689999999999999988764
No 37
>PLN02470 acetolactate synthase
Probab=93.65 E-value=0.17 Score=53.62 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||++|.......+. ......++|.||..+....+ ..++.|.+|+..+|+.|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~--~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLE--AFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChh--hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 3456788999999999998654332221 12235678999998765443 4689999999999999988774
No 38
>PRK06154 hypothetical protein; Provisional
Probab=93.64 E-value=0.17 Score=53.46 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++|||+|+||++|....... . ...+.++|.|+.++.... ...++.|.||+.++|+.|++.|..
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~---~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 343 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGL---P-MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRR 343 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCc---c-CCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhh
Confidence 45567889999999999987532211 1 234578888888876543 367899999999999999988753
No 39
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.58 E-value=0.16 Score=53.64 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=51.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+++.......... .....++|.||..+....+ ..++.|.||+..+|+.|.+.|+
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLEL--FSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 35567889999999999986543322211 1234678999988776543 5789999999999999988774
No 40
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.50 E-value=0.17 Score=53.38 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=52.0
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+...+++|||+|++|+++...+...+... ...+.++|.||.++..... ..++.|.||+..+|+.|++.|.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 45567899999999999876554333111 1225689999988776543 5789999999999999988775
No 41
>PRK05858 hypothetical protein; Provisional
Probab=93.44 E-value=0.24 Score=51.99 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=54.8
Q ss_pred cCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHH
Q 018442 183 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 260 (356)
Q Consensus 183 fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l 260 (356)
|.|..|...-..+.+.++++|++|.+|+++........ ...+.++|.|+.++..... ..++.|.+|+..+++.|
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 319 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV----FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc----cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence 34444433223445678899999999998754322211 1234789999998765543 57899999999999999
Q ss_pred HHHhc
Q 018442 261 MRHLN 265 (356)
Q Consensus 261 ~~~L~ 265 (356)
.+.|.
T Consensus 320 ~~~l~ 324 (542)
T PRK05858 320 AGAGG 324 (542)
T ss_pred HHhcc
Confidence 88775
No 42
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.43 E-value=0.18 Score=53.41 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=51.1
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++|||+|++|+++.......+ .....+.++|.||.++.... ...++.|.+|+..+|+.|.+.+.
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~--~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSV--EVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCch--hhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence 44568899999999999765333222 11234578999998877643 35789999999999999988774
No 43
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.37 E-value=0.17 Score=53.04 Aligned_cols=69 Identities=12% Similarity=0.299 Sum_probs=50.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHh
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L 264 (356)
.+...+++||++|++|+++...-...+. ....+.++|.||.++....+ ..++.|.+|+..+++.|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLN--TFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcc--ccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 4556788999999999998653222221 12235679999988765543 579999999999999998765
No 44
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.34 E-value=0.17 Score=53.13 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=53.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHH-hcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhccCCCC
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKS-LRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNLWIPP 270 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a-~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~~iP~ 270 (356)
.+.+.+++|||+|++|+++...+...+.... .....++|.||.++....+ ..++.|.+|+..+|++|.+.+....+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~ 342 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPPASPA 342 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccccchh
Confidence 3556778999999999998655432221111 1135688999988765443 568999999999999998765433344
Q ss_pred c
Q 018442 271 Y 271 (356)
Q Consensus 271 ~ 271 (356)
|
T Consensus 343 ~ 343 (557)
T PRK08199 343 W 343 (557)
T ss_pred H
Confidence 4
No 45
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.26 E-value=0.19 Score=52.96 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++||++|++|+++.-....... ......++|.||.++....+ ..++.|.+|+..+|+.|.++|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~--~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPK--TFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChh--hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 4456788999999999998643322221 11235689999988765543 4689999999999999988774
No 46
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.24 E-value=0.25 Score=51.95 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~--d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++|||+|++|+++.-........ ....+.++|.|+.++... ....++.|.||+.++|++|.+.|.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 259 RSFALAEADVVMLVGARLNWLLSHGKGK-LWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred HHHHHhcCCEEEEECCCCchhhccCchh-hcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence 3356889999999999986443222110 112357888888876543 346789999999999999998884
No 47
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.17 E-value=0.21 Score=52.75 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=51.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d-~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++||+|++|+.+.......+.. ...+.++|.||.++.... ...++.|.||+..+|++|.+.|.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSL--YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 45567889999999999987554333311 224578999998875432 22369999999999999988774
No 48
>PF13289 SIR2_2: SIR2-like domain
Probab=93.11 E-value=0.15 Score=42.94 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=25.1
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhc-CC---CeEEEEcCcCC
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLR-GG---GKIVIVNLQQT 239 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~-~g---~~lV~IN~~~t 239 (356)
.+-.+.-+|++|.|+.=..+..+...+.+ .+ .+.++|.+.+.
T Consensus 82 ~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 82 SLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred HHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 33366788888999986665555433332 22 24666666553
No 49
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.10 E-value=0.24 Score=52.11 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=51.8
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++|||+|++|+++........ .......++|.||.++....+ ..++.|.+|+.++|+.|.+.+.
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKT--EQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCH--hhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 45578899999999999875443222 112345689999998876543 5689999999999999988774
No 50
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.08 E-value=0.2 Score=52.58 Aligned_cols=70 Identities=13% Similarity=0.272 Sum_probs=51.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+.+.......+.. ...+.++|.||.++.... ...++.|.+|+..+|+.|.+.+.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAK--FAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 34567789999999999986543322211 223578999999876543 35689999999999999998874
No 51
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.88 E-value=0.24 Score=52.10 Aligned_cols=71 Identities=13% Similarity=0.262 Sum_probs=51.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++||++|++|+++...-...+ .....+.++|.||.++.... ...++.|.||+..+|+.|.+.+..
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 338 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKL--ASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY 338 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCCh--hhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc
Confidence 355678899999999999864322221 11234578899998876543 357899999999999999988753
No 52
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.73 E-value=0.24 Score=52.36 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=49.7
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCC-----CCCccEEEEccHHHHHHHHHHHhcc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-----DKKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~-----d~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
+.+.++++||+|++|+.|...+... ....+.++|.||.++... ....++.|.||+..++++|.+.|.-
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~----~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 345 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI----RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKS 345 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc----cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhh
Confidence 4556789999999999875332211 122456899999887643 3356899999999999999988853
No 53
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.73 E-value=0.29 Score=51.91 Aligned_cols=70 Identities=13% Similarity=0.284 Sum_probs=51.0
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++||++|++|+.+.-........ ...+.++|.||.++....+ ..++.|.+|+..+|+.|++.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISS--FAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccc--cCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 45567889999999999976432222211 2345788999988765443 4689999999999999998774
No 54
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.70 E-value=0.23 Score=52.69 Aligned_cols=72 Identities=26% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCcccccc-ccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACN-LPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~-lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++||++|+||++|.-..... ........+.++|.|+..+.... ...++.|.||+..+|++|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 34567889999999999986322110 10011224678999998876543 35789999999999999998885
No 55
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.67 E-value=0.34 Score=51.19 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=50.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccc-cccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPAC-NLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~-~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+.+.-.... .........+.++|.||.++....+ ..++.|.||+..+|++|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 3556788999999999998632110 0000112246789999988765443 5789999999999999998884
No 56
>PRK08266 hypothetical protein; Provisional
Probab=92.67 E-value=0.21 Score=52.23 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=50.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d-~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+.+|||+|++|+++... ...+.. ...+.++|.||.++.... ...++.|.+|+..+|+.|.+.|.
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWPW--RPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-cccccc--cCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 3456778999999999998755 222211 223568899888765533 35789999999999999998774
No 57
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.39 E-value=0.38 Score=50.74 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
...+++|||+|+||+++.-......+. ....+.++|.|+..+.... ...++.|.||+..+|++|.+.|.
T Consensus 267 ~~~l~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 267 SLALANADVVLLVGARLNWLLSHGKGK-TWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHHhcCCEEEEeCCCCchhcccCchh-ccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 346889999999999985433221110 1124578898888766543 35689999999999999998874
No 58
>PRK08611 pyruvate oxidase; Provisional
Probab=92.39 E-value=0.3 Score=51.66 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++||+|++|+++..... + ..+.++|.||.++....+ ..++.|.+|+..+|+.|.+.+.
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~~--~-----~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVDY--L-----PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc--C-----CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 345668899999999998743221 1 123689999988765543 5689999999999999988775
No 59
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.34 E-value=0.27 Score=52.12 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||+++.......... ....+.++|.||.++....+ ..++.|.||+.++|+.|.+.+.
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAH-FASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhh-cCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 35567889999999999986543322111 11234789999988765443 5689999999999999988774
No 60
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.20 E-value=0.33 Score=51.59 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++|||+|++||++....+ ++ ...++++|.||.++.... ...++.|.+|+..+|++|.+.|.-
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~~~--~~---~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYSEF--LP---KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLER 334 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHHhc--CC---CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhc
Confidence 455678899999999999742211 11 123568999998876654 356899999999999999988753
No 61
>PRK08617 acetolactate synthase; Reviewed
Probab=91.94 E-value=0.36 Score=50.67 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=49.9
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++|||+|++|+++.-.....+. ...+.++|.||.++...+. ..++.|.+|+..+|+.|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 445688999999999987533222221 1124689999998876554 5789999999999999987764
No 62
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=91.89 E-value=0.37 Score=51.04 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=49.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+...+++|||+|+||+++... .+ ..+.++|.||..+....+ ..++.|.+|+..+|+.|.+.|.-
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~-----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~ 324 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QF-----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKE 324 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hc-----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhcc
Confidence 4556788999999999987532 11 124578999988876543 56899999999999999998863
No 63
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.71 E-value=0.41 Score=50.52 Aligned_cols=70 Identities=9% Similarity=0.164 Sum_probs=50.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+++.......+. ....+.++|.|+.++.... ...++.|.+|+..+|++|.+.++
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLA--YFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchh--hcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 3556688999999999998643322221 1223567888988876543 35689999999999999988775
No 64
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.24 E-value=0.42 Score=48.70 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=48.8
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+ ++||+|++|+.+.-.....+ . ...+.++|.|+.++...++ ..++.|.||+..+++.|.+.+.
T Consensus 271 ~~~-~aDlvl~lG~~~~~~~~~~~-~--~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 271 EEL-QPDLVIRFGGPPVSKRLRQW-L--ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhC-CCCEEEEeCCCcchhHHHHH-H--hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 345 89999999999865443333 1 1235789999998877654 5689999999999999987774
No 65
>PRK07064 hypothetical protein; Provisional
Probab=90.80 E-value=0.51 Score=49.34 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=50.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+++.......+. .....++|.||.++.... ...++.|.+|+..+|+.|.+.+.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS---LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc---cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 3556788999999999998755433321 112347888888866543 35789999999999999988774
No 66
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.41 E-value=0.53 Score=49.77 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=48.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d--~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++|||+|++|+++..... .. ....+..+|.||.++.... ...++.|.||+..+|.+|...|.-
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~~---~~-~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 327 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAEV---SK-AFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEP 327 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc---cc-ccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc
Confidence 345678899999999998753222 11 1123445588888766544 356899999999999999887753
No 67
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.19 E-value=0.65 Score=49.03 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=48.5
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++|||+|++|+++... .+ .....++|.||..+....+ ..++.|.+|+..++..|.+.+.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 446788999999999987532 11 1234689999988766543 5689999999999999988774
No 68
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=88.87 E-value=0.6 Score=48.27 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC---CCccEEEEccHHHHHHHH
Q 018442 184 EDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD---KKASLVVHAPVDKVIAGV 260 (356)
Q Consensus 184 gE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d---~~~dl~I~g~~d~vl~~l 260 (356)
+|..|-..-..-..++++||++|++|+-|+----..+|- ...+..++|.||..+..+. -+.++.|.||+..++..|
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~P-k~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L 337 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPP-KWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQL 337 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCC-ccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHH
Confidence 344444333333457899999999999877321111110 1235778888877765543 378999999999999999
Q ss_pred HHHhcc
Q 018442 261 MRHLNL 266 (356)
Q Consensus 261 ~~~L~~ 266 (356)
.+.|+-
T Consensus 338 ~e~l~~ 343 (571)
T KOG1185|consen 338 VEELQD 343 (571)
T ss_pred HHHhcC
Confidence 999964
No 69
>PLN02573 pyruvate decarboxylase
Probab=88.29 E-value=0.76 Score=48.72 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||++|.......+.. ...+.++|.||.++....+..++.+. ++..++..|.+.|.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSL--LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCcccccccc--cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 34567789999999999986544322211 12457899999988776554455544 68888998988775
No 70
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=87.01 E-value=1.5 Score=45.33 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.|-....+|||+|-|||-++-.-..+.. .-.+.+.+++.||-++-..-+...+.+.+|+...|.+|...|+.
T Consensus 288 AAN~~A~~ADlVigiGTR~~DFTTgS~a-lF~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g 359 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDFTTGSKA-LFKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGG 359 (617)
T ss_pred HHHhhhhhcCEEEEecccccccccccHH-HhcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcc
Confidence 3445677999999999998854444431 22346788999999987766778899999999999999998854
No 71
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=86.41 E-value=0.64 Score=48.71 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=46.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||++|.......+... . ...++|.||..+....+ ..++.| +|+..+|.+|.+.++
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~-~-~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQ-L-TPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeecc-C-CcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 455678899999999999864332222111 1 12468888887655432 345667 899999999988774
No 72
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=86.15 E-value=0.33 Score=32.49 Aligned_cols=34 Identities=21% Similarity=0.549 Sum_probs=21.6
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
+..+|..|++.|....... . .....| |.||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~---~-~~~~~C--P~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKIS---D-DPLATC--PECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEecC---C-CCCCCC--CCCCCcce
Confidence 4569999998764322111 1 345679 89998654
No 73
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.03 E-value=1.4 Score=46.16 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 018442 193 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 193 ~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d-~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..+.+.+++|||+|.+|+++.-....... .....+.++|.||..+.... ...++.|.+|+..++++|.+.|.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPG-PHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCcc-ccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 34556788999999999874222111110 01123568889988876543 24678999999999999998885
No 74
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=85.99 E-value=1.5 Score=44.99 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=40.2
Q ss_pred HHhccCCEEEEEccCCCcc-c-cccccHHHhcCCCeEEEEcCcCCCCCCCccEEE
Q 018442 197 ENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~-P-~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I 249 (356)
..+.+||++|++|+..... | .......++++|+++|.|++..+.....+|+.|
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l 220 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWV 220 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEe
Confidence 4678899999999875432 2 112224567789999999999999888888776
No 75
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=85.57 E-value=1.8 Score=45.44 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=44.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHH
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAG 259 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~ 259 (356)
.+.+.+++|||+|++|+++.... + ...+.++|.||.++....+ ..++.|.+|+..+|..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 34567889999999999985322 1 1235689999998766543 5789999999999953
No 76
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=85.45 E-value=1.3 Score=45.48 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHhccCCEEEEEccCCCcc-c--cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE---ccHHHHHHHHHHHh
Q 018442 197 ENCRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH---APVDKVIAGVMRHL 264 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~-P--~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~---g~~d~vl~~l~~~L 264 (356)
.++.+||++|++|+..... | .......++++|+++|.|++..+.....+|..|. |.-..++-.|++.|
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~i~PGtD~al~~al~~~i 229 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLPIRPGTDAALALGMLNVI 229 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeeccCCCcHHHHHHHHHHHH
Confidence 4677999999999875542 3 2223345667899999999999998888888774 43334444444443
No 77
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=84.55 E-value=1.9 Score=43.28 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..+|.|.+|.|.++.-...+ +.-..+|-||.++. |.-+.+|+.|-||+-+++++|.++|.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 45799999999887665555 22345889999976 56789999999999999999999875
No 78
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=84.36 E-value=2.3 Score=41.87 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=49.0
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..||.|.+|-|.++.-.+.+ +.-..+|-||.++. |.-+.+|+.|-||.-+++++|.++|+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 46799999999987665555 22235889999976 46689999999999999999999885
No 79
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=83.74 E-value=1.8 Score=44.93 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=42.3
Q ss_pred HHHhccCCEEEEEccCCCc-cc-cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 196 EENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V-~P-~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.+.++|++|++|+.... .| .......++++|+++|.|++..+.....+|+.|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 3578899999999987543 33 2233355778899999999999998888887664
No 80
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=83.50 E-value=2.3 Score=44.80 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=44.5
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHH
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAG 259 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~ 259 (356)
+.+.+++||++|++|+.+.......+ ......++|.|+.++..... ..++.|.+++.++|+.
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQW---LADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHH---HhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 44667899999999999853322122 11223489999998876654 5789999999999987
No 81
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=83.43 E-value=2.3 Score=41.82 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=47.6
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.-+|.|.+|.|.++.-...+ +.-..+|-||.++. |.-+.+|+.|-||.-+++++|.+++.
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 34699999999887655554 22345889999976 56789999999999999999998863
No 82
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.06 E-value=0.46 Score=32.62 Aligned_cols=34 Identities=29% Similarity=0.652 Sum_probs=21.4
Q ss_pred ccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCC-cc
Q 018442 137 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS-RL 176 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg-~l 176 (356)
++..+|.+||..|..-. .+.. .....| |.||+ .+
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~-~~~~~C--P~Cg~~~~ 37 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISE-DDPVPC--PECGSTEV 37 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCC-CCCCcC--CCCCCCce
Confidence 35679999998763221 1222 445678 89998 44
No 83
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=81.82 E-value=3.7 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=35.0
Q ss_pred eeEEEeeccCCCCCCCCceeEEEeecCCCCchhhhccccCCceeeeeeccc
Q 018442 295 KWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQIT 345 (356)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 345 (356)
.|++-+.+.++. ....++++|+...-..-..+-.+++++||.+.+++=..
T Consensus 3 ~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GWGe 52 (84)
T PF03366_consen 3 KWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGWGE 52 (84)
T ss_dssp EEEEEEEECCCT---TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEESS-
T ss_pred EEEEEEEeCCCC-CccceEEEEEEECCCCCCCCceEecCCCCEEEEeEecc
Confidence 699999999988 57899999988533222224568999999998776443
No 84
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.26 E-value=2.5 Score=43.73 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=40.5
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.++.++|++|++|+.... .|. ......++++|+++|.|++..+.....+|+.|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 457799999999987543 222 222244667899999999999988888888774
No 85
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=80.69 E-value=3.3 Score=40.77 Aligned_cols=60 Identities=27% Similarity=0.313 Sum_probs=47.4
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.-+|.|.+|.|.++.-...+ +.-..+|-||.++. |.-+.+|+.|-||..+++++|.++|.
T Consensus 251 ~P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 34699999999887655444 22345889999976 56789999999999999999998863
No 86
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=80.16 E-value=2.1 Score=45.32 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=41.3
Q ss_pred HHhccCCEEEEEccCCCc-cc-cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P-~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
..+.+||++|++|+.... .| ..+....++++|+++|.|++..+..-..+|+.|.
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred hHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 457899999999997543 23 2233345677899999999999998888887764
No 87
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=80.04 E-value=3.1 Score=45.23 Aligned_cols=54 Identities=24% Similarity=0.142 Sum_probs=39.6
Q ss_pred HHhccCCEEEEEccCCCc--cccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V--~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.++.+||++|++|+.... .|+......++++|+++|.||+..+.....+|..|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 467899999999985322 233222244567899999999999988888887763
No 88
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.67 E-value=3.5 Score=43.91 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=30.8
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCC
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQT 239 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t 239 (356)
+.+.+||++|++|+-... +|. ......++++|+++|.||+..+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 467789999999985432 332 1222456778999999999765
No 89
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=79.48 E-value=2 Score=45.12 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=44.0
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHh
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L 264 (356)
.+.+.+++|||+|++|++|.-...... .....+.++|.|+..+..... ..++.| +++.+.|.++++++
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~--~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVS--QRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCcccccccccc--cccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 455678899999999999875422111 011234678888877654433 456777 66777777777655
No 90
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=78.19 E-value=3.7 Score=42.46 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=55.5
Q ss_pred ccceEecCCCCChh---chHHHHHHhccCCEEEEEccCCCccccc---------cccHHHhcCCCeEEEEcCcCCC----
Q 018442 177 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPAC---------NLPLKSLRGGGKIVIVNLQQTP---- 240 (356)
Q Consensus 177 rp~Vv~fgE~lp~~---~~~~a~~~~~~aDLlLvlGTSl~V~P~~---------~lp~~a~~~g~~lV~IN~~~t~---- 240 (356)
+-||++=+-.+|-+ +|+..-..++++|+.||+|..-.|.|++ .+|-....+-.++|.+++.-.+
T Consensus 355 HMNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyag 434 (463)
T PF02233_consen 355 HMNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAG 434 (463)
T ss_dssp HHHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS
T ss_pred cceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCC
Confidence 46777776677765 3566667899999999999988887754 4454333344556677666332
Q ss_pred -----CCCCccEEEEccHHHHHHHHHHHh
Q 018442 241 -----KDKKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 241 -----~d~~~dl~I~g~~d~vl~~l~~~L 264 (356)
+.+.....+.||+.+.++++.++|
T Consensus 435 v~NpLF~~~nt~MlfGDAk~~~~~l~~~~ 463 (463)
T PF02233_consen 435 VDNPLFYKDNTRMLFGDAKKTLEELVAEL 463 (463)
T ss_dssp -S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred CCCcceecCCcEEEeccHHHHHHHHHHhC
Confidence 124677889999999999998764
No 91
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.91 E-value=3.3 Score=43.52 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=38.8
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcC--CCeEEEEcCcCCCCCCCccEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRG--GGKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~--g~~lV~IN~~~t~~d~~~dl~I 249 (356)
.++.++|++|++|+-... .|. ......++++ |+++|.|++..+.....+|..|
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l 209 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHL 209 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeee
Confidence 456799999999987543 221 1222345555 9999999999999888888766
No 92
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=77.64 E-value=6.8 Score=40.43 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=59.0
Q ss_pred ccceEecCCCCChhc---hHHHHHHhccCCEEEEEccCCCcccccc---------ccHHHhcCCCeEEEEcCcCCC----
Q 018442 177 KDTVLDWEDALPPVE---MNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP---- 240 (356)
Q Consensus 177 rp~Vv~fgE~lp~~~---~~~a~~~~~~aDLlLvlGTSl~V~P~~~---------lp~~a~~~g~~lV~IN~~~t~---- 240 (356)
.-||++=+-.+|-++ ++..-..+.++|+.||+|..-.|.|+++ +|-....+-..+|.+++.-.+
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAG 433 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAG 433 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCC
Confidence 468898887888764 4444457889999999999999988764 232222222234444444221
Q ss_pred C-----CCCccEEEEccHHHHHHHHHHHh
Q 018442 241 K-----DKKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 241 ~-----d~~~dl~I~g~~d~vl~~l~~~L 264 (356)
. -+.....+.||+.+.+.++.+.+
T Consensus 434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~~ 462 (462)
T PRK09444 434 VQNPLFFKENTQMLFGDAKASVDAILKAL 462 (462)
T ss_pred CCCcceecCCceEEeccHHHHHHHHHHhC
Confidence 1 24567789999999999987653
No 93
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=77.39 E-value=3.1 Score=44.58 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=39.6
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCCCCCCCccEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I 249 (356)
.++.+||++|++|+.... .|. ......++++|+++|.|++..+.....+|..|
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i 205 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHI 205 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCccc
Confidence 468889999999986443 332 22334566789999999999998877788766
No 94
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=77.27 E-value=5.1 Score=39.67 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=38.7
Q ss_pred HHhccCCEEEEEccCCCc-cccc-cccHHHhc-CCCeEEEEcCcCCCCCCCccEEEEccHH
Q 018442 197 ENCRMADVVLCLGTSLQI-TPAC-NLPLKSLR-GGGKIVIVNLQQTPKDKKASLVVHAPVD 254 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~~-~lp~~a~~-~g~~lV~IN~~~t~~d~~~dl~I~g~~d 254 (356)
.++.++|++|++|+.... .|.. .....+.+ +|+++|.|++..+.. .+|..+.-...
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg 202 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL 202 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence 467799999999987643 4422 22234433 599999999999888 67776654443
No 95
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=76.70 E-value=3.9 Score=46.48 Aligned_cols=68 Identities=16% Similarity=0.343 Sum_probs=46.6
Q ss_pred HHhccCCEEEEEccCCC-cccc-ccccHHHhcCCCeEEEEcCcCCCCCCCccEEE--EccHHH-HHHHHHHHh
Q 018442 197 ENCRMADVVLCLGTSLQ-ITPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV--HAPVDK-VIAGVMRHL 264 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~-V~P~-~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I--~g~~d~-vl~~l~~~L 264 (356)
.++.+||++|++|+-.. .+|. ......++++|+++|.||+..+..-..+|+.| +-..|- ++-.|++.|
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~irPGTD~AL~~am~~~I 289 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIRSGSDIAFLNGMIKYI 289 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCCCChHHHHHHHHHHHH
Confidence 46789999999998654 3342 23334577789999999999998888888765 323333 344455444
No 96
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.55 E-value=2.4 Score=43.45 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.6
Q ss_pred HhccCCEEEEEccCCCcc---ccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQIT---PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~---P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.+||++|++|+-.... |.......++++|+++|.|++..+.....+|+.|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 567899999999875433 22233345667899999999999988888887753
No 97
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.40 E-value=4 Score=42.73 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred HHhccCCEEEEEccCCCcc-ccc-c------ccHHHhcCCCeEEEEcCcCCCCCCCccEEE
Q 018442 197 ENCRMADVVLCLGTSLQIT-PAC-N------LPLKSLRGGGKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~-P~~-~------lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I 249 (356)
..+.+||++|++|+-.... |.. . ....++++|+++|.|++..+..-..+|+.|
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l 212 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHL 212 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEee
Confidence 4578999999999864432 221 1 223466789999999999999888888776
No 98
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=76.35 E-value=1.6 Score=38.29 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=20.8
Q ss_pred ccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 137 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.+.++|..||...... ....+|.| |+||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~-------~~~~l~~C--p~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELT-------HPERLPPC--PKCGHT 139 (146)
T ss_pred CceEecccCCCEEEec-------CCCcCCCC--CCCCCC
Confidence 4567999999764222 23457899 899975
No 99
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.29 E-value=4.5 Score=43.74 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=40.2
Q ss_pred HHhccCCEEEEEccCCC-cccc-ccccHHHhcC-CCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQ-ITPA-CNLPLKSLRG-GGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~-V~P~-~~lp~~a~~~-g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
..+++||++|++|+-.. .+|. ......++++ |+++|.|++..+.....+|+.|.
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 45788999999998754 3453 2333445555 99999999999998888887653
No 100
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.13 E-value=5.4 Score=43.94 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=46.9
Q ss_pred HHhccCCEEEEEccCCCcc--c-cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE---ccHHHHHHHHHHHh
Q 018442 197 ENCRMADVVLCLGTSLQIT--P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH---APVDKVIAGVMRHL 264 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~--P-~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~---g~~d~vl~~l~~~L 264 (356)
..+.+||++|++|+..... | ..+....++++|+++|.|++..+.....+|..|. |.=..++-.|++.|
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~~~I 242 (760)
T cd02760 169 ADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMIHVM 242 (760)
T ss_pred chHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHHHHH
Confidence 4678999999999986432 2 1233344567899999999999998888888763 33333444555444
No 101
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=74.77 E-value=2.1 Score=37.85 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=25.3
Q ss_pred CccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 136 NSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 136 ~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
+--...|+.|+..|..+..+. ..-.| |.||+.|.
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~------~~F~C--p~Cg~~L~ 139 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME------LNFTC--PRCGAMLD 139 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH------cCCcC--CCCCCEee
Confidence 334468999999998776654 25789 79999853
No 102
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=74.56 E-value=2.8 Score=46.97 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=44.9
Q ss_pred HHHhccCCEEEEEccCCCc-c-ccccccHHHhcCCCeEEEEcCcCCCCCCCccEEE--EccHHHHH
Q 018442 196 EENCRMADVVLCLGTSLQI-T-PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV--HAPVDKVI 257 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V-~-P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I--~g~~d~vl 257 (356)
...+.+||++|++|+.... . +.......++++|+++|.|++..+.....+|+.| +-..|.+|
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~AL 284 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAAL 284 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHH
Confidence 3456789999999987543 2 2334445677789999999999999888888765 43445444
No 103
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=74.54 E-value=2.2 Score=38.54 Aligned_cols=32 Identities=31% Similarity=0.723 Sum_probs=24.9
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
..+|+.|+..|..+..+. ..-+| |.||+.|..
T Consensus 117 ~Y~Cp~C~~rytf~eA~~------~~F~C--p~Cg~~L~~ 148 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAME------YGFRC--PQCGEMLEE 148 (178)
T ss_pred EEECCCCCcEEeHHHHhh------cCCcC--CCCCCCCee
Confidence 468999999997776543 35789 799999865
No 104
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=74.01 E-value=7.4 Score=39.18 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=61.3
Q ss_pred ccceEecCCCCChhc---hHHHHHHhccCCEEEEEccCCCcccccc--------ccHHHhcCCCeEEEEcCcCCC-----
Q 018442 177 KDTVLDWEDALPPVE---MNPAEENCRMADVVLCLGTSLQITPACN--------LPLKSLRGGGKIVIVNLQQTP----- 240 (356)
Q Consensus 177 rp~Vv~fgE~lp~~~---~~~a~~~~~~aDLlLvlGTSl~V~P~~~--------lp~~a~~~g~~lV~IN~~~t~----- 240 (356)
..||++-+-.+|-+. ++..-++..++|++||+|..-.|.|+++ +|.... .++|.|+++...-.
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLeV-~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLEV-WKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCceeee-eccceEEEEeccccccccc
Confidence 567888777777553 4555668889999999999888877654 332211 24667777766432
Q ss_pred CC-----CCccEEEEccHHHHHHHHHHHh
Q 018442 241 KD-----KKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 241 ~d-----~~~dl~I~g~~d~vl~~l~~~L 264 (356)
.+ +..+..+.||+.+.++++.+.|
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 12 4567889999999999998754
No 105
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.76 E-value=5.1 Score=41.97 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=45.9
Q ss_pred HhccCCEEEEEccCCCc--cccc--cccHHHhcCCCeEEEEcCcCCCCCCCccEEE---EccHHHHHHHHHHHh
Q 018442 198 NCRMADVVLCLGTSLQI--TPAC--NLPLKSLRGGGKIVIVNLQQTPKDKKASLVV---HAPVDKVIAGVMRHL 264 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V--~P~~--~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I---~g~~d~vl~~l~~~L 264 (356)
.+.+||++|++|+.... ++.. .....++++|+++|.|++..+.....+|+.| .|.=..++-.|++.|
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHH
Confidence 57899999999976532 2211 1123456789999999999998888888877 444444555555554
No 106
>PRK09939 putative oxidoreductase; Provisional
Probab=72.91 E-value=5.9 Score=43.65 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=31.0
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCCC
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTP 240 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t~ 240 (356)
+.+.+||++|++|+-... +|. ......++++|+++|.||+..+.
T Consensus 204 ~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~ 249 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQER 249 (759)
T ss_pred HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 457899999999986433 342 12223467789999999997653
No 107
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=72.36 E-value=1.7 Score=30.76 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=19.3
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCC
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 174 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg 174 (356)
+..+|.+|+..|..... +.. .....| |.||+
T Consensus 4 Yey~C~~Cg~~fe~~~~---~~~-~~~~~C--P~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQK---MSD-DPLATC--PECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEEe---cCC-CCCCCC--CCCCC
Confidence 45689999987643211 111 234579 79997
No 108
>PRK12496 hypothetical protein; Provisional
Probab=72.05 E-value=1.7 Score=38.81 Aligned_cols=44 Identities=27% Similarity=0.678 Sum_probs=27.0
Q ss_pred HhhcCCCCCceeeccCCc------cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 120 HLRSGIPREKLAELHGNS------FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 120 h~rAG~~~~~v~elHG~~------~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
-..-|+ ++.-+|+.- ...+|..|++.|..+.. .-.| |.||.+++
T Consensus 105 A~~lgi---~v~~~~~~~i~~~~~w~~~C~gC~~~~~~~~~---------~~~C--~~CG~~~~ 154 (164)
T PRK12496 105 AKKLNI---KFENIKTKGIKKVIKWRKVCKGCKKKYPEDYP---------DDVC--EICGSPVK 154 (164)
T ss_pred HHHcCC---eEeccccccchhheeeeEECCCCCccccCCCC---------CCcC--CCCCChhh
Confidence 445565 455665321 34679999998844321 1258 78998864
No 109
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=71.82 E-value=1.3 Score=49.12 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=35.4
Q ss_pred eccCCccc-----cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhc
Q 018442 132 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 200 (356)
Q Consensus 132 elHG~~~~-----~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~ 200 (356)
-|-||+.. .+|++|+..|.|-. ..-+| ++|||.+-.+|-- .-=.+.++.+.+.+.
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P---------L~G~C--~kCGg~lilTV~~---GsV~KYl~~s~~la~ 1059 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRIP---------LVGKC--LKCGNNLTLTVSK---GSVMKYLELSKFLAE 1059 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccCC---------CCCcc--cccCCeEEEEEec---chhHhhHHHHHHHHH
Confidence 56799854 48999999985543 23479 7999988887752 222334555544444
No 110
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=71.72 E-value=2.4 Score=29.43 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=19.3
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
..+|..||.++..+... ..-+| |.||+.+
T Consensus 3 ~y~C~~CG~~~~~~~~~-------~~~~C--p~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEYG-------TGVRC--PYCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCCC-------CceEC--CCCCCeE
Confidence 46899999876444221 14589 7999753
No 111
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.32 E-value=9.3 Score=40.68 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=38.0
Q ss_pred Hhc-cCCEEEEEccCCCc-cccc---------cccHHHhcCCCeEEEEcCcCCCCCC-CccEEE
Q 018442 198 NCR-MADVVLCLGTSLQI-TPAC---------NLPLKSLRGGGKIVIVNLQQTPKDK-KASLVV 249 (356)
Q Consensus 198 ~~~-~aDLlLvlGTSl~V-~P~~---------~lp~~a~~~g~~lV~IN~~~t~~d~-~~dl~I 249 (356)
.+. +||++|++|+.... .|.. .....++++|+++|.|++..+.... .+|+.|
T Consensus 165 D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l 228 (609)
T cd02751 165 DIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWI 228 (609)
T ss_pred hHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEE
Confidence 344 59999999986443 3321 2334567789999999999998876 688766
No 112
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=70.87 E-value=6.7 Score=42.88 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=39.5
Q ss_pred HhccCCEEEEEccCCCc-cccc--cccHHHh-cCCCeEEEEcCcCCCCCCCccEEE
Q 018442 198 NCRMADVVLCLGTSLQI-TPAC--NLPLKSL-RGGGKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P~~--~lp~~a~-~~g~~lV~IN~~~t~~d~~~dl~I 249 (356)
.+.+||++|++|+-... .|+. +....++ ++|+++|.|++..+.....+|+.|
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l 248 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWH 248 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeee
Confidence 56799999999987543 3432 2223455 689999999999999888888876
No 113
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=70.77 E-value=2.1 Score=28.29 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=20.7
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
..|+.|+..|.-+.. .+.......+| |+||..+
T Consensus 3 ~~CP~C~~~~~v~~~--~~~~~~~~v~C--~~C~~~~ 35 (38)
T TIGR02098 3 IQCPNCKTSFRVVDS--QLGANGGKVRC--GKCGHVW 35 (38)
T ss_pred EECCCCCCEEEeCHH--HcCCCCCEEEC--CCCCCEE
Confidence 589999988744422 22223334689 7899765
No 114
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=70.60 E-value=4.2 Score=39.80 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=38.2
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCCCCCCCccEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I 249 (356)
.++.+||++|++|+.... .|. ......++++|+++|.|++..+.....+|..|
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i 206 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWL 206 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence 456799999999986543 332 22224456689999999999988766667665
No 115
>PRK11032 hypothetical protein; Provisional
Probab=70.40 E-value=2.6 Score=37.50 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=20.2
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
+.++|.+||...... ....+|.| |+||+.
T Consensus 123 G~LvC~~Cg~~~~~~-------~p~~i~pC--p~C~~~ 151 (160)
T PRK11032 123 GNLVCEKCHHHLAFY-------TPEVLPLC--PKCGHD 151 (160)
T ss_pred ceEEecCCCCEEEec-------CCCcCCCC--CCCCCC
Confidence 567999999764221 23457899 899974
No 116
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=69.96 E-value=2.8 Score=36.47 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=24.0
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
...|+.|+..|..+....... ....-.| |.||+.|..
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d-~~~~f~C--p~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLD-MDGTFTC--PRCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcC-CCCcEEC--CCCCCEEEE
Confidence 358999999987654433222 1222689 799998753
No 117
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=69.74 E-value=5.5 Score=42.53 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=39.1
Q ss_pred HHhccCCEEEEEccCCCcc-cc----ccccHHHhcCCCeEEEEcCcCCCCCC-CccEEE
Q 018442 197 ENCRMADVVLCLGTSLQIT-PA----CNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~-P~----~~lp~~a~~~g~~lV~IN~~~t~~d~-~~dl~I 249 (356)
..+.+||++|+.|+-.... +. ......++++|+++|.|++..+..-. .+|+.|
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i 220 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWI 220 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEE
Confidence 4567899999999865432 21 23334567789999999999998875 688765
No 118
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=69.49 E-value=7.5 Score=42.56 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=62.7
Q ss_pred CCcCCCCCCCCc----cccceEecCCCCChhchHHHHHHhccCCEEEEEccCCC-cccccc-ccHHHhc-CCCeEEEEcC
Q 018442 164 PRRCSDVKCGSR----LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQ-ITPACN-LPLKSLR-GGGKIVIVNL 236 (356)
Q Consensus 164 ~p~C~~p~Cgg~----lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~-V~P~~~-lp~~a~~-~g~~lV~IN~ 236 (356)
+..|. .-|..+ |-++|-.+++.-+ .+.+..+||+|+||+.-. -+|+.. ....+.+ +|.|||.+.+
T Consensus 387 VDncs-R~CqsPa~~gL~rTvG~g~dsgs-------i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~ 458 (978)
T COG3383 387 VDNCS-RYCQSPATDGLFRTVGSGADSGS-------IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDP 458 (978)
T ss_pred cccch-hhccCcccccchheeeccCCCCC-------HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEecc
Confidence 34554 346553 5566666666533 457889999999998533 355432 2244555 8999999999
Q ss_pred cCCCCCCCccEEEEccHH---HHHHHHHHHh
Q 018442 237 QQTPKDKKASLVVHAPVD---KVIAGVMRHL 264 (356)
Q Consensus 237 ~~t~~d~~~dl~I~g~~d---~vl~~l~~~L 264 (356)
.++.....+|+.++-... .+|.++++-+
T Consensus 459 R~~emaerAdlf~~pkpGtd~a~l~Avakyi 489 (978)
T COG3383 459 RKHEMAERADLFLHPKPGTDLAWLTAVAKYI 489 (978)
T ss_pred chhHHHHhhhcccCCCCCccHHHHHHHHHHH
Confidence 999999999999875443 3555555544
No 119
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=69.43 E-value=8.7 Score=42.16 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=31.1
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCCC
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTP 240 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t~ 240 (356)
+.+.+||++|++|+-... .|. ......++++|+++|.||+..+.
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 467789999999986432 332 12224577899999999997654
No 120
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=68.40 E-value=1.7 Score=49.55 Aligned_cols=55 Identities=29% Similarity=0.436 Sum_probs=35.8
Q ss_pred eccCCccc-----cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhc
Q 018442 132 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 200 (356)
Q Consensus 132 elHG~~~~-----~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~ 200 (356)
-|-||+.. .+|++|+..|.|-. ..-+| ++|||.+-++|-- .-=++.++.|.+.+.
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~P---------L~G~C--~kCGg~iilTv~~---Gsv~KYl~~a~~~~~ 1300 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRMP---------LAGKC--RKCGGRIILTVHE---GSVEKYLDTAKMVAT 1300 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccCC---------CCCcc--cccCCeEEEEEec---chHHHHHHHHHHHHH
Confidence 56799854 49999999986543 23479 7899988887752 222334555544444
No 121
>PRK04023 DNA polymerase II large subunit; Validated
Probab=67.90 E-value=2.6 Score=47.22 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=35.7
Q ss_pred eccCCccc-----cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhc
Q 018442 132 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 200 (356)
Q Consensus 132 elHG~~~~-----~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~ 200 (356)
-|-||+.. .+|++|+..|.|-. ..-+| |+|||.+-.+|-- .-=++.++.+.+.++
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P---------L~G~C--~kCGg~lilTVh~---GsV~KYl~~s~~la~ 1084 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRPP---------LSGKC--PKCGGNLILTVHK---GSVEKYLEVSKKLAE 1084 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccCC---------CCCcC--ccCCCeEEEEEec---chHHHHHHHHHHHHH
Confidence 56699854 48999999985543 23479 7999999888752 222334555544443
No 122
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.31 E-value=9.1 Score=42.02 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=39.2
Q ss_pred HHhccCCEEEEEccCCCc-ccc----ccccHHHh-cCCCeEEEEcCcCCCCC---CCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA----CNLPLKSL-RGGGKIVIVNLQQTPKD---KKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~----~~lp~~a~-~~g~~lV~IN~~~t~~d---~~~dl~I~ 250 (356)
.++.+||++|++|+.... .|. .+....++ ++|.++|.|++..+... ..+|+.|.
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlp 269 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVP 269 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEEC
Confidence 467889999999998653 332 12223344 37899999999999877 78887763
No 123
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=66.85 E-value=8.4 Score=41.10 Aligned_cols=60 Identities=8% Similarity=0.131 Sum_probs=41.7
Q ss_pred HhccCCEEEEEccCCCc-cc----------cccccHHHhcCCCeEEEEcCcCCCCCCCcc---EEEEccHHHHH
Q 018442 198 NCRMADVVLCLGTSLQI-TP----------ACNLPLKSLRGGGKIVIVNLQQTPKDKKAS---LVVHAPVDKVI 257 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P----------~~~lp~~a~~~g~~lV~IN~~~t~~d~~~d---l~I~g~~d~vl 257 (356)
.+.+||++|+.|+-... .| .......++++|+++|.|++..+..-..+| +.|+-..|-+|
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~add~~l~irPGTD~AL 240 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWIAIRPGTDVAL 240 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhcCcEeccCCCcHHHH
Confidence 46899999999986443 22 112234567789999999999998877654 45665555544
No 124
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=65.39 E-value=8.3 Score=42.32 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=41.3
Q ss_pred hccCCEEEEEccCCCc-c---------ccccccHHHhcCCCeEEEEcCcCCCCCCCc-cEE--EEccHHHHH
Q 018442 199 CRMADVVLCLGTSLQI-T---------PACNLPLKSLRGGGKIVIVNLQQTPKDKKA-SLV--VHAPVDKVI 257 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V-~---------P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~-dl~--I~g~~d~vl 257 (356)
+.+||++|+.|+.... . +...+...++++|+++|.|++..|..-..+ |+. |+-..|-+|
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~AL 236 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVAL 236 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHHH
Confidence 6789999999987543 2 222333456778999999999999987764 554 444445444
No 125
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=65.09 E-value=2.3 Score=28.36 Aligned_cols=30 Identities=40% Similarity=0.895 Sum_probs=19.9
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
..|..||+.|...|... ...-.| ..||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~pP-----~~~~~C--d~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP-----KVEGVC--DNCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBC--TTTTEBE
T ss_pred cCcCCCCCccccccCCC-----CCCCcc--CCCCCee
Confidence 57999999986655432 123478 5899865
No 126
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.89 E-value=18 Score=36.06 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=34.7
Q ss_pred ccCCEEEEEccCCCc-cccc--cccHH-------HhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 200 RMADVVLCLGTSLQI-TPAC--NLPLK-------SLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 200 ~~aDLlLvlGTSl~V-~P~~--~lp~~-------a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.++|++|++|+-... .|.. ++... +.++|+++|.|++..+.....+|..|.
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~ 190 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQ 190 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEe
Confidence 479999999986543 3321 11001 114688999999999988777787664
No 127
>PRK06260 threonine synthase; Validated
Probab=64.67 E-value=3.4 Score=41.74 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=20.2
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
+.++|..|+++|..+. ...+| |.||+.|.
T Consensus 2 ~~~~C~~cg~~~~~~~---------~~~~C--p~cg~~l~ 30 (397)
T PRK06260 2 YWLKCIECGKEYDPDE---------IIYTC--PECGGLLE 30 (397)
T ss_pred CEEEECCCCCCCCCCC---------ccccC--CCCCCeEE
Confidence 4589999999885432 13478 78988643
No 128
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=63.43 E-value=13 Score=36.97 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHhccCCEEEEEccCCC-cccccccc-HHH-hcCCCeEEEEcCcCCCCCCCccE
Q 018442 197 ENCRMADVVLCLGTSLQ-ITPACNLP-LKS-LRGGGKIVIVNLQQTPKDKKASL 247 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~-V~P~~~lp-~~a-~~~g~~lV~IN~~~t~~d~~~dl 247 (356)
..+.++|++|++|+-.. ..|....- ..+ +++|+++|.|++..+..-..+++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~ 194 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHL 194 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccC
Confidence 45788999999999764 34533221 233 34689999999987765444443
No 129
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=61.72 E-value=5 Score=40.07 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=42.2
Q ss_pred HHhccCCEEEEEccCCCc-ccc--ccccHHHhcCCCeEEEEcCcCCCCCCCccEE--EEccHHHHH-HHHHHHh
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA--CNLPLKSLRGGGKIVIVNLQQTPKDKKASLV--VHAPVDKVI-AGVMRHL 264 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~--~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~--I~g~~d~vl-~~l~~~L 264 (356)
.++.+||++|++|+.... .|. .++...++++|+++|.|++..+.....+|.. |.-..|..| -.+++.|
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~i 180 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHVI 180 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHHH
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccce
Confidence 378899999999986543 221 2333446778999999999999766666654 444555555 4555444
No 130
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=61.52 E-value=14 Score=40.97 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHhccCCEEEEEccCCCc-ccccc-ccHHH-hcCCCeEEEEcCcCCCC-CCCccEEE
Q 018442 196 EENCRMADVVLCLGTSLQI-TPACN-LPLKS-LRGGGKIVIVNLQQTPK-DKKASLVV 249 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V-~P~~~-lp~~a-~~~g~~lV~IN~~~t~~-d~~~dl~I 249 (356)
.+.+.++|++|++|+.... .|... ....+ +++|+++|.|++..+.. .+.+|..+
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l 428 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLL 428 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhcee
Confidence 4567899999999996554 45321 22233 46799999999988763 34455544
No 131
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=60.55 E-value=14 Score=38.53 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=43.9
Q ss_pred HhccCCEEEEEccCCCcc---cc--ccccHHHhcCC-----CeEEEEcCcCCCCCCCccEEE---EccHHHHHHHHHHHh
Q 018442 198 NCRMADVVLCLGTSLQIT---PA--CNLPLKSLRGG-----GKIVIVNLQQTPKDKKASLVV---HAPVDKVIAGVMRHL 264 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~---P~--~~lp~~a~~~g-----~~lV~IN~~~t~~d~~~dl~I---~g~~d~vl~~l~~~L 264 (356)
.+.++|++|++|+..... |. .+....++++| .++|.|++..+.....+|..| .|.-..++-.|++.|
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al~lam~~~i 272 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFALGLAHKL 272 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHHHHHHHHHH
Confidence 578999999999976543 21 12212333444 399999999999888888776 343334445555544
No 132
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=60.08 E-value=2.8 Score=41.35 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=30.5
Q ss_pred eccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceE
Q 018442 132 ELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL 181 (356)
Q Consensus 132 elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv 181 (356)
-.-|.++.--|..|...|..+.... .--+| |+|||.++-.|.
T Consensus 239 P~LGKY~~TAC~rC~t~y~le~A~~------~~wrC--pkCGg~ikKGV~ 280 (403)
T COG1379 239 PRLGKYHLTACSRCYTRYSLEEAKS------LRWRC--PKCGGKIKKGVS 280 (403)
T ss_pred ccccchhHHHHHHhhhccCcchhhh------hcccC--cccccchhhhHH
Confidence 3468899999999999886654322 12379 899998876664
No 133
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=58.09 E-value=3.6 Score=47.35 Aligned_cols=55 Identities=33% Similarity=0.418 Sum_probs=35.4
Q ss_pred eccCCccc-----cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhcc
Q 018442 132 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRM 201 (356)
Q Consensus 132 elHG~~~~-----~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~ 201 (356)
-|-||+.. .+| +|+..|.|-. ..-+| |+|||.+-.+|-- .-=++.++.|...+.+
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~P---------L~G~C--~kCGg~~ilTV~k---Gsv~KYl~~a~~~~~~ 1589 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRVP---------LKGKC--PKCGSKLILTVSK---GAVEKYMPVAKMMAEK 1589 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccCC---------CCCcC--cccCCeEEEEEec---chHHHHHHHHHHHHHH
Confidence 56799854 489 9999885543 23479 7999988877752 2223445555554443
No 134
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=57.93 E-value=15 Score=36.76 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHhccCCEEEEEccCCC-cccc-ccccHHHhcCCCeEEEEcCcCCC
Q 018442 196 EENCRMADVVLCLGTSLQ-ITPA-CNLPLKSLRGGGKIVIVNLQQTP 240 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~-V~P~-~~lp~~a~~~g~~lV~IN~~~t~ 240 (356)
..++.++|++|++|+... ..|. ......++++|+++|.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 356888999999999753 2332 22234566789999999997664
No 135
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=57.74 E-value=12 Score=37.69 Aligned_cols=74 Identities=16% Similarity=0.334 Sum_probs=55.1
Q ss_pred ccceEecCCCCChhch--HHHHHHh--ccCCEEEEEccCCCccccccccHHHhc--CCCeEEEEcCcCCCCCCCccEEEE
Q 018442 177 KDTVLDWEDALPPVEM--NPAEENC--RMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 177 rp~Vv~fgE~lp~~~~--~~a~~~~--~~aDLlLvlGTSl~V~P~~~lp~~a~~--~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.|.-+.|.+..|...= -.+.+.+ +++|-.|++|+ -|.+++|..+.+ ..-++|.|++-+++....+|++|.
T Consensus 306 Ypf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~s----Dp~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP 381 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIAS----DPGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIP 381 (429)
T ss_pred CceeeecccCCcCCCcccccHHHHHhccCCCeEEEEec----CccccChHHHHHHhhcCCEEEecCCCCcchhhcceecc
Confidence 5777888777764321 1223333 47899999999 478999977644 578899999999999999999988
Q ss_pred ccHH
Q 018442 251 APVD 254 (356)
Q Consensus 251 g~~d 254 (356)
+-++
T Consensus 382 ~aI~ 385 (429)
T COG1029 382 SAID 385 (429)
T ss_pred ccee
Confidence 7655
No 136
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=57.50 E-value=6.9 Score=32.94 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 34 IAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 34 i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
|++++++|++|++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999999854
No 137
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=57.21 E-value=7.8 Score=25.04 Aligned_cols=25 Identities=36% Similarity=0.884 Sum_probs=17.1
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
++|..||..|..+. ..-+| |.||..
T Consensus 2 ~~C~~CGy~y~~~~---------~~~~C--P~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGEE---------APWVC--PVCGAP 26 (33)
T ss_pred EECCCCCCEECCCc---------CCCcC--cCCCCc
Confidence 68999998774332 23478 789863
No 138
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=56.69 E-value=18 Score=40.20 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=44.9
Q ss_pred HHHhccCCEEEEEccCCC-ccccccc-cHHHh-cCCCeEEEEcCcCCCCC-C--CccEEE---EccHHHHHHHHHHHhc
Q 018442 196 EENCRMADVVLCLGTSLQ-ITPACNL-PLKSL-RGGGKIVIVNLQQTPKD-K--KASLVV---HAPVDKVIAGVMRHLN 265 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~-V~P~~~l-p~~a~-~~g~~lV~IN~~~t~~d-~--~~dl~I---~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++|++|++|+-+. -+|+... ...+. ++|+++|.|++..+..- . ++++.+ .|.=..++..|++.+-
T Consensus 365 l~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii 443 (819)
T PRK08493 365 LEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFL 443 (819)
T ss_pred HHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHH
Confidence 456789999999999654 3564433 23453 48899999999887653 2 344655 3333345566666653
No 139
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=56.60 E-value=4.8 Score=34.64 Aligned_cols=26 Identities=27% Similarity=0.699 Sum_probs=17.3
Q ss_pred ccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 141 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 141 ~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
+|++||+.|..... . ...-| |.||+.
T Consensus 3 ~Ct~Cg~~f~dgs~-e------il~GC--P~CGg~ 28 (131)
T PF09845_consen 3 QCTKCGRVFEDGSK-E------ILSGC--PECGGN 28 (131)
T ss_pred ccCcCCCCcCCCcH-H------HHccC--cccCCc
Confidence 89999998853321 1 12358 789986
No 140
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=55.24 E-value=5.8 Score=28.40 Aligned_cols=28 Identities=39% Similarity=0.711 Sum_probs=19.0
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...|..|++++..+ ....+-+| |.||..
T Consensus 6 ~Y~C~~Cg~~~~~~-------~~~~~irC--p~Cg~r 33 (49)
T COG1996 6 EYKCARCGREVELD-------QETRGIRC--PYCGSR 33 (49)
T ss_pred EEEhhhcCCeeehh-------hccCceeC--CCCCcE
Confidence 46899999987222 12335589 799976
No 141
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=55.19 E-value=13 Score=39.58 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHhccCCEEEEEccCCCc-cccc-cccHHHhcCC-CeEEEEcCcCCCCCCCccEEE
Q 018442 196 EENCRMADVVLCLGTSLQI-TPAC-NLPLKSLRGG-GKIVIVNLQQTPKDKKASLVV 249 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V-~P~~-~lp~~a~~~g-~~lV~IN~~~t~~d~~~dl~I 249 (356)
...+.++|++|++|+.... .|.. .....+.++| +++|.||+..+.....+|+++
T Consensus 357 ~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l 413 (603)
T TIGR01973 357 LADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNL 413 (603)
T ss_pred HHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccce
Confidence 3467889999999986543 3322 1223344444 899999999998887777655
No 142
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=55.09 E-value=8.9 Score=31.93 Aligned_cols=30 Identities=37% Similarity=1.017 Sum_probs=19.7
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 179 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~ 179 (356)
-.|.+||+.|+ .+ ...+-.| |+||....+.
T Consensus 10 R~Cp~CG~kFY---DL-----nk~PivC--P~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFY---DL-----NKDPIVC--PKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhc---cC-----CCCCccC--CCCCCccCcc
Confidence 47999998762 21 1123359 8999876665
No 143
>PRK07591 threonine synthase; Validated
Probab=54.94 E-value=5.9 Score=40.45 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=20.1
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
..++|..|+++|..+. . .+| |.||+.|.
T Consensus 17 ~~l~C~~Cg~~~~~~~---------~-~~C--~~cg~~l~ 44 (421)
T PRK07591 17 VALKCRECGAEYPLGP---------I-HVC--EECFGPLE 44 (421)
T ss_pred eEEEeCCCCCcCCCCC---------C-ccC--CCCCCeEE
Confidence 4589999999885432 1 479 78998764
No 144
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=54.70 E-value=8.5 Score=22.99 Aligned_cols=23 Identities=43% Similarity=1.097 Sum_probs=13.9
Q ss_pred ccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 141 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 141 ~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
.|+.||++...+ ..-| |.||..|
T Consensus 1 ~Cp~CG~~~~~~-----------~~fC--~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD-----------AKFC--PNCGTPL 23 (23)
T ss_pred CCcccCCCCCCc-----------Ccch--hhhCCcC
Confidence 478888765222 3357 6788653
No 145
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=54.66 E-value=22 Score=29.06 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEccH
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPV 253 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g~~ 253 (356)
..+.+-|++|++.-|....-..+....++++|.++|.|-- ...+..+.+|+.|....
T Consensus 43 ~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 43 GMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred CcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 3467889999999999988888888888888998776644 45667777888776543
No 146
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=54.39 E-value=2.1 Score=37.67 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=48.6
Q ss_pred HHHHHHHHHHc----CCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCC
Q 018442 95 THMALVELEKA----GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 170 (356)
Q Consensus 95 ~H~aL~~L~~~----g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p 170 (356)
+|+-+-.+-.. |+....+-+.||||--..-.+ -.+--..|..+..+|. |++.|.+.-...++.... .-+| -
T Consensus 70 aHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~-~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g~-~YrC--~ 144 (156)
T COG3091 70 AHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQ-FEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRGE-VYRC--G 144 (156)
T ss_pred HHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccch-HHHhhccccceeEEee-cCCccchhhhcccccccc-eEEe--c
Confidence 45554444321 344456778888875444332 2355567788899999 999886655544443223 5689 6
Q ss_pred CCCCccc
Q 018442 171 KCGSRLK 177 (356)
Q Consensus 171 ~Cgg~lr 177 (356)
+|+|.|.
T Consensus 145 ~C~gkL~ 151 (156)
T COG3091 145 KCGGKLV 151 (156)
T ss_pred cCCceEE
Confidence 8999864
No 147
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=54.07 E-value=6.5 Score=24.02 Aligned_cols=24 Identities=42% Similarity=1.070 Sum_probs=15.9
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
..|..|++....+ ..-| |.||..|
T Consensus 3 ~~Cp~Cg~~~~~~-----------~~fC--~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPD-----------AKFC--PNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcc-----------cccC--hhhCCCC
Confidence 5799999753222 3468 7898764
No 148
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=53.56 E-value=7.5 Score=25.84 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=20.4
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.+|+.|+..|.-+.. .+......-+| ++|+..
T Consensus 3 i~CP~C~~~f~v~~~--~l~~~~~~vrC--~~C~~~ 34 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDD--KLPAGGRKVRC--PKCGHV 34 (37)
T ss_pred EECCCCCceEEcCHH--HcccCCcEEEC--CCCCcE
Confidence 589999988854432 23333444588 789864
No 149
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=53.43 E-value=7.8 Score=25.66 Aligned_cols=32 Identities=41% Similarity=0.723 Sum_probs=20.4
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.+|..|+..|.-+.. .+..+...-+| ++||..
T Consensus 3 i~Cp~C~~~y~i~d~--~ip~~g~~v~C--~~C~~~ 34 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDE--KIPPKGRKVRC--SKCGHV 34 (36)
T ss_pred EECCCCCCEEeCCHH--HCCCCCcEEEC--CCCCCE
Confidence 579999998854432 23333344578 688864
No 150
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=53.25 E-value=18 Score=39.94 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHhccCCEEEEEccCCCcc-cc----ccccHHHh-cCCCeEEEEcCcCCCCC-CCccEEEE
Q 018442 196 EENCRMADVVLCLGTSLQIT-PA----CNLPLKSL-RGGGKIVIVNLQQTPKD-KKASLVVH 250 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~-P~----~~lp~~a~-~~g~~lV~IN~~~t~~d-~~~dl~I~ 250 (356)
...+.++|++|++|+..... |. ......++ ++|+++|.|++..+... ..+|..|.
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ 287 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIP 287 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEEC
Confidence 34677899999999875542 32 12223344 47899999999999886 46787654
No 151
>PRK13937 phosphoheptose isomerase; Provisional
Probab=52.79 E-value=27 Score=31.39 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=45.2
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEcc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 252 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g~ 252 (356)
...+.+-|++|++-.|..+.-..+....++++|.++|.| +...++..+.+|+.|.-.
T Consensus 101 ~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~ 158 (188)
T PRK13937 101 EALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVP 158 (188)
T ss_pred HhhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 345788899999999998888888878889999998877 555677777888877643
No 152
>PRK06450 threonine synthase; Validated
Probab=51.96 E-value=8.7 Score=38.06 Aligned_cols=26 Identities=38% Similarity=0.792 Sum_probs=17.9
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
++|..|+++|..+ ...+| |.||+.|.
T Consensus 4 ~~C~~Cg~~~~~~----------~~~~C--~~cg~~l~ 29 (338)
T PRK06450 4 EVCMKCGKERESI----------YEIRC--KKCGGPFE 29 (338)
T ss_pred eEECCcCCcCCCc----------ccccC--CcCCCEeE
Confidence 6899999887321 12478 68988654
No 153
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=51.52 E-value=34 Score=30.11 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=44.4
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 251 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g 251 (356)
..+.+-|++|++-.|..+.-..+....++++|+++|.| |....+..+.+|+.|.-
T Consensus 97 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~ 152 (177)
T cd05006 97 ALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV 152 (177)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 35788899999999988888888878888999998877 55667777788887764
No 154
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=51.27 E-value=11 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.600 Sum_probs=19.7
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 179 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~ 179 (356)
-.|++||+.|+ . +......| |+||....+.
T Consensus 10 r~Cp~cg~kFY---D-----Lnk~p~vc--P~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFY---D-----LNRRPAVS--PYTGEQFPPE 39 (129)
T ss_pred ccCCCcCcccc---c-----cCCCCccC--CCcCCccCcc
Confidence 48999998762 1 12235679 8999765443
No 155
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=51.22 E-value=22 Score=39.07 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=33.3
Q ss_pred HHHhccCCEEEEEccCCC-cccc-ccccHHHhcCCCeEEEEcCcCCCC
Q 018442 196 EENCRMADVVLCLGTSLQ-ITPA-CNLPLKSLRGGGKIVIVNLQQTPK 241 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~-V~P~-~~lp~~a~~~g~~lV~IN~~~t~~ 241 (356)
..++.++|++|++|+-.. ..|. ......++++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 456788999999998743 3442 223345667899999999988754
No 156
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=50.87 E-value=31 Score=41.43 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHH
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRH 263 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~ 263 (356)
..+.++|++|++|+.+.-......... . ...++|.|+..+...+. ..++.|.+|+..++..|.+.
T Consensus 594 ~~~~~aDlVl~iG~rl~s~~~t~~~~~-~-~~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~ 660 (1655)
T PLN02980 594 RNWIQFDVVIQIGSRITSKRVSQMLEK-C-FPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKA 660 (1655)
T ss_pred hccCCCCEEEEeCCccccHHHHHHHHh-C-CCCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhc
Confidence 346789999999999852211111100 1 11358899998877653 56799999999999888653
No 157
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=49.51 E-value=19 Score=39.50 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHhccCCEEEEEccCCCcc-c----cccccHHH-hcCCCeEEEEcCcCCCCC-CCccEEE
Q 018442 197 ENCRMADVVLCLGTSLQIT-P----ACNLPLKS-LRGGGKIVIVNLQQTPKD-KKASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~-P----~~~lp~~a-~~~g~~lV~IN~~~t~~d-~~~dl~I 249 (356)
.++.+||++|++|+..... | .......+ +++|+++|.|++..+..- ..+|+.|
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l 269 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWI 269 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEE
Confidence 4678899999999975542 3 11111233 367999999999998865 4677765
No 158
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=48.13 E-value=29 Score=36.56 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=48.8
Q ss_pred EecCCCCChh--------chHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEE
Q 018442 181 LDWEDALPPV--------EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVH 250 (356)
Q Consensus 181 v~fgE~lp~~--------~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~ 250 (356)
-.|+|..|.. --....+.++.||++|++|+-|+=.-...+ ...-+..++|.++........ ...+
T Consensus 248 g~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~F--t~~~~~~~~i~~~~~~v~I~~~~f~~l--- 322 (557)
T COG3961 248 GVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGF--TYQYKPANIIEIHPDSVKIKDAVFTNL--- 322 (557)
T ss_pred ccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccce--eeecCcccEEEeccCeeEecccccCCe---
Confidence 3566776642 134567889999999999998765444444 222234678888777654321 1112
Q ss_pred ccHHHHHHHHHHHh
Q 018442 251 APVDKVIAGVMRHL 264 (356)
Q Consensus 251 g~~d~vl~~l~~~L 264 (356)
...++|++|++++
T Consensus 323 -~m~~~L~~L~~~i 335 (557)
T COG3961 323 -SMKDALQELAKKI 335 (557)
T ss_pred -eHHHHHHHHHHHh
Confidence 5677888887766
No 159
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.01 E-value=23 Score=31.20 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=34.6
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEE
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVH 250 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~ 250 (356)
+.+-|++|++.-|..+.........++++|+++|.| +....+..+.+|+.+.
T Consensus 70 ~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 122 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVE 122 (179)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 566778888877777776667666777777776655 4445555555555554
No 160
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=48.01 E-value=11 Score=26.14 Aligned_cols=27 Identities=41% Similarity=0.795 Sum_probs=18.1
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
..|..||.++..+ ....-+| |.||..+
T Consensus 3 Y~C~~Cg~~~~~~--------~~~~irC--~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIK--------SKDVVRC--RECGYRI 29 (44)
T ss_pred EECCCCCCEeecC--------CCCceEC--CCCCceE
Confidence 5799999875332 1234589 7899763
No 161
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=47.99 E-value=11 Score=38.20 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.6
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
.++|..||++|. +.. ..+| |.|+|.|.
T Consensus 2 ~l~C~~Cg~~~~-~~~---------~~~C--~~c~g~l~ 28 (398)
T TIGR03844 2 TLRCPGCGEVLP-DHY---------TLSC--PLDCGLLR 28 (398)
T ss_pred EEEeCCCCCccC-Ccc---------ccCC--CCCCCceE
Confidence 579999999885 211 2478 67877654
No 162
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=47.94 E-value=21 Score=35.71 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=29.5
Q ss_pred ccCCCcccCCCCCCcccCCChhHHHHHHHHHHHHHHhC----CcEEEEeCC
Q 018442 7 EKLSYREDVGSVGMSEIFDPPHLLQQKIAELAVMIKKS----KHLVAFTGA 53 (356)
Q Consensus 7 ~~l~~~~~~g~~~~~e~~~~~~~l~~~i~~la~~i~~a----k~Ivv~TGA 53 (356)
.+||++.+.+.... -..+|++.|.+|-+.+-+| ++|||+||+
T Consensus 30 ~rMSY~~~~~~~~f-----~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGs 75 (363)
T PF04864_consen 30 HRMSYFSDSSNGWF-----ISPELERQIRRLHRVVGNAVTDGRYIVFGTGS 75 (363)
T ss_dssp TT-SSSS-TTSSTT-----S-HHHHHHHHHHHHHH-SB--TTSEEEEECHH
T ss_pred ccceeEEecCCcee-----ccHHHHHHHHHHHHHhccccccCcEEEEcCCH
Confidence 36788876654432 2468999999999999876 699999995
No 163
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=47.37 E-value=11 Score=31.09 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=16.8
Q ss_pred cccCCCCCccchh-hHHHhhcccCCCCcCCCCCCCCc
Q 018442 140 EICPSCGVEYMRD-FEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 140 ~~C~~C~~~y~~d-~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
-||++||+.|..- ..+ ..-| |+||..
T Consensus 3 H~CtrCG~vf~~g~~~i--------l~GC--p~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGSEEI--------LSGC--PKCGCN 29 (112)
T ss_pred ceecccccccccccHHH--------HccC--ccccch
Confidence 3899999988542 111 2347 678864
No 164
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=47.00 E-value=24 Score=39.22 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHhccCCEEEEEccCCCc-ccc--ccccHHHh--cCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA--CNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~--~~lp~~a~--~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
+.+.+||++|++|+.... .|. .++. .++ ++|+++|.|++..+.....+|+.|.
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~-~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ 259 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVT-DRRLSNPDVKVAVLSTFEHRSFELADNGII 259 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHH-HHHhcCCCCeEEEECCCCCchhHhcCeeec
Confidence 467899999999987543 332 1221 222 4799999999998887777777653
No 165
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=46.93 E-value=20 Score=41.48 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=44.3
Q ss_pred HhccCCEEEEEccCCCc--cccccccHHHhcCCCeEEEEcCcCCCCCCCccEEE--EccHHHHH
Q 018442 198 NCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV--HAPVDKVI 257 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V--~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I--~g~~d~vl 257 (356)
...+++++|+.|+.... .|.+++...++.+|+++|.|.+..+..-..+|..| +-..|-+|
T Consensus 242 D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~AL 305 (1235)
T TIGR01580 242 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAL 305 (1235)
T ss_pred hhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHH
Confidence 45589999999997543 24445545678899999999999998888888765 44455544
No 166
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=46.22 E-value=7.3 Score=32.43 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=19.7
Q ss_pred eeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 130 LAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 130 v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
-+++.=--...+|..|++.|..+... -.| |.||+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~~---------~~C--P~Cgs~ 95 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEFD---------FSC--PRCGSP 95 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHCC---------HH---SSSSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCCC---------CCC--cCCcCC
Confidence 33444444567999999988554321 248 789976
No 167
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=46.04 E-value=8.6 Score=34.77 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=19.6
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
+..+|..|++.|.. ..-.| |.||++++
T Consensus 138 w~~rC~GC~~~f~~-----------~~~~C--p~CG~~~~ 164 (177)
T COG1439 138 WRLRCHGCKRIFPE-----------PKDFC--PICGSPLK 164 (177)
T ss_pred eeEEEecCceecCC-----------CCCcC--CCCCCceE
Confidence 55799999998751 12368 78999854
No 168
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.98 E-value=8.4 Score=30.08 Aligned_cols=41 Identities=22% Similarity=0.499 Sum_probs=24.8
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc-----cceEecC
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK-----DTVLDWE 184 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr-----p~Vv~fg 184 (356)
....|..|+..| ..+..+...+ .-.| |.||+.+| +.|+|=|
T Consensus 11 Y~Y~c~~cg~~~---dvvq~~~ddp-lt~c--e~c~a~~kk~l~~vgi~fKG 56 (82)
T COG2331 11 YSYECTECGNRF---DVVQAMTDDP-LTTC--EECGARLKKLLNAVGIVFKG 56 (82)
T ss_pred eEEeecccchHH---HHHHhcccCc-cccC--hhhChHHHHhhccceEEEec
Confidence 456899999755 2233333322 3468 78998764 5566544
No 169
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.95 E-value=24 Score=29.09 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=44.4
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEccHH
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPVD 254 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g~~d 254 (356)
.+.+.|++|++-.|.++.-..+....++++|+++|.| |....+..+.+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 4667899999999988877777778888899986655 55566677788888877666
No 170
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=45.78 E-value=20 Score=31.58 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCcEEEEe
Q 018442 32 QKIAELAVMIKKSKHLVAFT 51 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~T 51 (356)
..++.+.++|++|++|+|+|
T Consensus 134 ~Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 134 NTIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp -SHHHHHHHHHH-SSEEEEE
T ss_pred CcHHHHHHHHHhcCceEEeC
Confidence 35799999999999999998
No 171
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.74 E-value=90 Score=32.73 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=15.7
Q ss_pred ccHHHHH-HHHHHHhccCCCCcccccce
Q 018442 251 APVDKVI-AGVMRHLNLWIPPYVRVDLF 277 (356)
Q Consensus 251 g~~d~vl-~~l~~~L~~~iP~~~~~~~~ 277 (356)
.+.+.+. .+|..+-.+..|+|.+--.+
T Consensus 392 ~d~~~f~~~el~~R~~~~~PPf~~l~~i 419 (505)
T TIGR00595 392 GDYEAFYEQELAQRRALNYPPFTRLIRL 419 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhcEEEE
Confidence 3455555 34444555678999865443
No 172
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=44.78 E-value=26 Score=36.22 Aligned_cols=43 Identities=30% Similarity=0.508 Sum_probs=33.9
Q ss_pred CcccCCChh-HHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCC
Q 018442 20 MSEIFDPPH-LLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIP 62 (356)
Q Consensus 20 ~~e~~~~~~-~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIP 62 (356)
+.+...+++ -+..+|++++++|+.||+-|++.|+|+=..+--|
T Consensus 273 m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p 316 (675)
T KOG4166|consen 273 MSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGP 316 (675)
T ss_pred HhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcch
Confidence 344445554 4679999999999999999999999997766544
No 173
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.56 E-value=28 Score=28.40 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=42.1
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEccH
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 253 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g~~ 253 (356)
.+.+-|++|++-.|....-..+....++++|+++|.| |...++..+.+|..|.-..
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 4778899999999888877777778888899998755 4445566667777765443
No 174
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=44.50 E-value=14 Score=24.17 Aligned_cols=26 Identities=31% Similarity=0.769 Sum_probs=17.0
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.++|..||..+..+. ....| |.||..
T Consensus 2 ~~~C~~CG~i~~g~~---------~p~~C--P~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGEE---------APEKC--PICGAP 27 (34)
T ss_pred eEECCCCCCEeECCc---------CCCcC--cCCCCc
Confidence 478999997653221 13478 789864
No 175
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=44.38 E-value=26 Score=25.20 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=27.9
Q ss_pred ceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 129 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 129 ~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
-|..+.|. .|..|+-....... ..+........| |.||..|
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~-~~i~~~~~i~~C--p~CgRiL 56 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQEL-NEIRKGDEIVFC--PNCGRIL 56 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHH-HHHHcCCCeEEC--cCCCccC
Confidence 47777776 89999977655543 333334567799 7899654
No 176
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=43.97 E-value=19 Score=39.55 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=43.2
Q ss_pred HhccCCEEEEEccCCCc-ccccc----ccHHHhcCCCeEEEEcCcCCCCCCCccEE--EEccHHHH-HHHHHHHh
Q 018442 198 NCRMADVVLCLGTSLQI-TPACN----LPLKSLRGGGKIVIVNLQQTPKDKKASLV--VHAPVDKV-IAGVMRHL 264 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P~~~----lp~~a~~~g~~lV~IN~~~t~~d~~~dl~--I~g~~d~v-l~~l~~~L 264 (356)
.++++|++|++|+.... +|... .....+..+.++|.|++..+..-..+|+. |+-..|-. +-.|++.|
T Consensus 196 D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~l 270 (765)
T COG0243 196 DIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGIAHVL 270 (765)
T ss_pred hHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCccccCCCcHHHHHHHHHHHH
Confidence 49999999999997766 55333 21223456789999999999876666543 43333433 24444443
No 177
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=43.74 E-value=49 Score=29.77 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=35.2
Q ss_pred ccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEc-cHHHHHHHHHH
Q 018442 200 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA-PVDKVIAGVMR 262 (356)
Q Consensus 200 ~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g-~~d~vl~~l~~ 262 (356)
.++||+|.+|+.+ |..+......++-+++..|.+.... ...|++.+.. +-++.++.|-+
T Consensus 107 ~~~DlvlfvG~~~---~~~~~~l~~lk~f~~~~~~~~~~~y-~~~a~~s~~~~~~~~~~~~l~~ 166 (171)
T PRK00945 107 GNYDLVIFIGVTY---YYASQGLSALKHFSPLKTITIDRYY-HPNADMSFPNLSKEEYLEYLDE 166 (171)
T ss_pred CCcCEEEEecCCc---hhHHHHHHHHhhcCCceEEEecCCc-CCCCceecCCCCHHHHHHHHHH
Confidence 6899999999985 6555554554444445555555444 3456665422 45555555543
No 178
>PRK12474 hypothetical protein; Provisional
Probab=43.39 E-value=71 Score=33.26 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHhccCCEEEEEccCCCcccccccc---HHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLP---LKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp---~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|+||+.+... ..... ........+++.++.- .+|+..+++.|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~------------~~d~~~~l~~L~~~l~ 320 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQP------------DEDLAQALQDLADAVD 320 (518)
T ss_pred HHHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECCC------------CcCHHHHHHHHHHhcc
Confidence 4456788999999999986321 00000 0001123455555421 2689999999887764
No 179
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.38 E-value=11 Score=30.26 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.3
Q ss_pred hCCcEEEEeCCCcCcc
Q 018442 43 KSKHLVAFTGAGISTS 58 (356)
Q Consensus 43 ~ak~Ivv~TGAGISt~ 58 (356)
+.++|++.+|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999975
No 180
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=43.28 E-value=14 Score=30.94 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=21.2
Q ss_pred eeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 131 AELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 131 ~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.++.=--...+|..|+..+..+. ....+| |+||+.
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~~~~~--------~~~~~C--P~Cgs~ 97 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVFKPNA--------LDYGVC--EKCHSK 97 (117)
T ss_pred EEEEecCCEEEhhhCCCccccCC--------ccCCcC--cCCCCC
Confidence 34444445679999997653321 112469 799975
No 181
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=43.06 E-value=10 Score=31.73 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=17.9
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...+|..|++.|..+.. .-.| |.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~~~---------~~~C--P~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEID---------LYRC--PKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCc---------CccC--cCCcCC
Confidence 34699999987644321 2358 789975
No 182
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=41.95 E-value=11 Score=30.53 Aligned_cols=28 Identities=43% Similarity=0.864 Sum_probs=18.5
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
-.+|.+||.+|..+.. + ..-+| |+|.+.
T Consensus 58 Pa~CkkCGfef~~~~i------k-~pSRC--P~CKSE 85 (97)
T COG3357 58 PARCKKCGFEFRDDKI------K-KPSRC--PKCKSE 85 (97)
T ss_pred ChhhcccCcccccccc------C-CcccC--Ccchhh
Confidence 4699999988755422 1 13478 788764
No 183
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=41.88 E-value=63 Score=32.14 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=34.3
Q ss_pred ccCCEEEEEccCCCc-ccc--ccc-------cHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 200 RMADVVLCLGTSLQI-TPA--CNL-------PLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 200 ~~aDLlLvlGTSl~V-~P~--~~l-------p~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.++|++|++|+.... .|. .++ .....++|.++|.|++..+.....+|..|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 469999999986443 332 111 011125688999999999988777776653
No 184
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=41.65 E-value=20 Score=25.71 Aligned_cols=28 Identities=18% Similarity=0.416 Sum_probs=19.1
Q ss_pred CCCCceeeccCCccccccCCCCCccchh
Q 018442 125 IPREKLAELHGNSFREICPSCGVEYMRD 152 (356)
Q Consensus 125 ~~~~~v~elHG~~~~~~C~~C~~~y~~d 152 (356)
.+++.|..--+....++|..|+.+|...
T Consensus 14 ~~p~~v~~~s~~~v~W~C~~Cgh~w~~~ 41 (55)
T PF14311_consen 14 LDPSEVTPGSNKKVWWKCPKCGHEWKAS 41 (55)
T ss_pred CCHHHhCcCCCCEEEEECCCCCCeeEcc
Confidence 4445555555556678999999987544
No 185
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.48 E-value=12 Score=30.85 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=10.5
Q ss_pred CcEEEEeCCCcCcc
Q 018442 45 KHLVAFTGAGISTS 58 (356)
Q Consensus 45 k~Ivv~TGAGISt~ 58 (356)
++|++.+|+|+||+
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 46788888888765
No 186
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=41.35 E-value=11 Score=31.46 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=19.8
Q ss_pred eccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 132 ELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 132 elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
++.=--...+|..|+..|..+. ..-.| |.||+.
T Consensus 63 ~I~~vp~~~~C~~Cg~~~~~~~---------~~~~C--P~Cgs~ 95 (113)
T PRK12380 63 HIVYKPAQAWCWDCSQVVEIHQ---------HDAQC--PHCHGE 95 (113)
T ss_pred EEEeeCcEEEcccCCCEEecCC---------cCccC--cCCCCC
Confidence 3333344569999997664331 11248 799965
No 187
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=41.01 E-value=15 Score=30.05 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCccCC
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGISTSCG 60 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt~sG 60 (356)
.++++++.|.++++ |+++|.|.|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 57889999999987 5677888876554
No 188
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=40.89 E-value=27 Score=30.33 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=47.3
Q ss_pred hHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC---------CccEEEEccHHHHHHHHHH
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK---------KASLVVHAPVDKVIAGVMR 262 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~---------~~dl~I~g~~d~vl~~l~~ 262 (356)
...+.+.+..||++++-||++...-..++...++ ++..++++-+.-.-.+. .+.. +--+.+.++..+.+
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~-~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGS-RVVDPEKVLRAISE 130 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEE-EES-HHHHHHHHCT
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEE-EEeCHHHHHHHHHc
Confidence 3456778999999999999998877777755554 57888899887544331 1222 24578888877754
Q ss_pred Hh
Q 018442 263 HL 264 (356)
Q Consensus 263 ~L 264 (356)
--
T Consensus 131 Gg 132 (147)
T PF04016_consen 131 GG 132 (147)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 189
>PRK05580 primosome assembly protein PriA; Validated
Probab=39.41 E-value=48 Score=36.06 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=15.6
Q ss_pred ccHHHHH-HHHHHHhccCCCCcccccce
Q 018442 251 APVDKVI-AGVMRHLNLWIPPYVRVDLF 277 (356)
Q Consensus 251 g~~d~vl-~~l~~~L~~~iP~~~~~~~~ 277 (356)
.+.+.+. .+|..+-.+..|+|.+--.+
T Consensus 560 ~d~~~f~~~El~~R~~~~~PPf~~l~~i 587 (679)
T PRK05580 560 QDYDAFAEQELEERRAAGYPPFGRLALL 587 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCCHHHhhEe
Confidence 3444444 34445556678898865544
No 190
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=39.30 E-value=45 Score=31.97 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCc-CCCCCCCccEEEEc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 251 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~-~t~~d~~~dl~I~g 251 (356)
....+...|++|++.-|..+.-.......++++|+++|-|--. .++..+.+|+.+..
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 4567889999999999988877777778889999998877555 77888888888776
No 191
>PRK13938 phosphoheptose isomerase; Provisional
Probab=39.30 E-value=51 Score=30.12 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=43.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
.....+.+-|++|++-.|..+.-..+....++++|.++|.|-- ...+..+.+|+.|.-
T Consensus 106 ~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v 164 (196)
T PRK13938 106 ALEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV 164 (196)
T ss_pred HHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEe
Confidence 3345677889999999998887777777888899999876644 455566677776653
No 192
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=39.28 E-value=23 Score=32.10 Aligned_cols=30 Identities=40% Similarity=0.833 Sum_probs=22.0
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
.+|+.|+-.|..+..+.. .-.| |.||+.|.
T Consensus 114 y~C~~~~~r~sfdeA~~~------~F~C--p~Cg~~L~ 143 (176)
T COG1675 114 YVCPNCHVKYSFDEAMEL------GFTC--PKCGEDLE 143 (176)
T ss_pred eeCCCCCCcccHHHHHHh------CCCC--CCCCchhh
Confidence 589989888877765442 3589 79998764
No 193
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=38.89 E-value=39 Score=30.41 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+-+.++++|++|++.|++.|.|+..
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCccc
Confidence 3468899999999999999999975
No 194
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=38.64 E-value=18 Score=36.63 Aligned_cols=41 Identities=27% Similarity=0.544 Sum_probs=27.6
Q ss_pred eccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceE
Q 018442 132 ELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL 181 (356)
Q Consensus 132 elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv 181 (356)
---|-++.--|.+|+..+....... ..-+| | ||+.+.-.|.
T Consensus 233 P~~GKYh~~~c~~C~~~~~~~~~~~------~~~~C--p-CG~~i~~GV~ 273 (374)
T TIGR00375 233 PLLGKYHQTACEACGEPAVSEDAET------ACANC--P-CGGRIKKGVS 273 (374)
T ss_pred cCCCccchhhhcccCCcCCchhhhh------cCCCC--C-CCCcceechH
Confidence 3457888889999997764442211 24589 8 9998665554
No 195
>PRK07586 hypothetical protein; Validated
Probab=38.62 E-value=94 Score=32.21 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=33.6
Q ss_pred HHHHHHhccCCEEEEEccCCCccccccccH---HHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 193 NPAEENCRMADVVLCLGTSLQITPACNLPL---KSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 193 ~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~---~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..+.+.+++|||+|++|+++... ....+. ........++.++. ..+|+..+|+.|.+.|.
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~d~~~~l~~L~~~l~ 316 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKAPVA-FFAYPGKPSRLVPEGCEVHTLAG------------PGEDAAAALEALADALG 316 (514)
T ss_pred HHHHHHHhcCCEEEEECCCCccc-ccccCCCccccCCCCceEEEECC------------CcccHHHHHHHHHHhhc
Confidence 44556788999999999985211 111100 00011223332211 13689999999988764
No 196
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.56 E-value=32 Score=28.27 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeec--cCCccccccCCCCCccc
Q 018442 92 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL--HGNSFREICPSCGVEYM 150 (356)
Q Consensus 92 P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~el--HG~~~~~~C~~C~~~y~ 150 (356)
++..|+.|..|++.|.+..+.+.|-- ..+++ +..-..+.|..||+.+.
T Consensus 42 ~~TVYR~L~~L~e~Gli~~~~~~~~~-----------~~Y~~~~~~~h~h~iC~~Cg~v~~ 91 (120)
T PF01475_consen 42 LATVYRTLDLLEEAGLIRKIEFGDGE-----------SRYELSTCHHHHHFICTQCGKVID 91 (120)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTSE-----------EEEEESSSSSCEEEEETTTS-EEE
T ss_pred HHHHHHHHHHHHHCCeEEEEEcCCCc-----------ceEeecCCCcceEEEECCCCCEEE
Confidence 34579999999999999776555322 23333 23445589999998653
No 197
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=37.87 E-value=72 Score=27.54 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=41.9
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
.+++-|++|++-.|..+.-..+....++++|.++|.|-- ...+..+.+|+.|.-
T Consensus 76 ~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 76 LGQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 457889999999999888777877888899999876643 455666778877653
No 198
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=37.18 E-value=21 Score=25.51 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.3
Q ss_pred cccCCCCCccchh
Q 018442 140 EICPSCGVEYMRD 152 (356)
Q Consensus 140 ~~C~~C~~~y~~d 152 (356)
.+|..|+..|..+
T Consensus 2 y~C~~CgyiYd~~ 14 (50)
T cd00730 2 YECRICGYIYDPA 14 (50)
T ss_pred cCCCCCCeEECCC
Confidence 6899999888643
No 199
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=36.84 E-value=42 Score=32.49 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=44.1
Q ss_pred EEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 204 VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 204 LlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
|.|.+|.|..+.-.+.+ +.-.-+|-||.++. |.-.-+|+.|.||.-+++++|-++|.
T Consensus 277 LYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 277 LYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred eEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 88889988776555544 22234778999975 45578999999999999999998874
No 200
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.78 E-value=16 Score=28.21 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=9.2
Q ss_pred cEEEEeCCCcCccC
Q 018442 46 HLVAFTGAGISTSC 59 (356)
Q Consensus 46 ~Ivv~TGAGISt~s 59 (356)
+|++.+|+|+||+.
T Consensus 1 kIlvvC~~Gi~TS~ 14 (90)
T PF02302_consen 1 KILVVCGSGIGTSL 14 (90)
T ss_dssp EEEEEESSSSHHHH
T ss_pred CEEEECCChHHHHH
Confidence 46777777777653
No 201
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=36.46 E-value=32 Score=34.79 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=36.5
Q ss_pred ceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc-cceEecCCCCChhchHHHHHHhccCCEEEE
Q 018442 129 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDWEDALPPVEMNPAEENCRMADVVLC 207 (356)
Q Consensus 129 ~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr-p~Vv~fgE~lp~~~~~~a~~~~~~aDLlLv 207 (356)
+++|--|- ..+|..|+..+. ...+...+| |.||+.+. -.=+|-|.-.++++.+++.+..+.. +
T Consensus 232 ~~~e~~g~--~~~c~~cg~~~~--------~~~~~~~~c--~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~----~ 295 (380)
T COG1867 232 KLLENLGY--IYHCSRCGEIVG--------SFREVDEKC--PHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL----E 295 (380)
T ss_pred HHHHhcCc--EEEcccccceec--------ccccccccC--CcccccceeccCcccCcccCHHHHHHHHHHhhcc----c
Confidence 34444333 468999983221 123345689 79998543 2334555555555666555544433 6
Q ss_pred EccC
Q 018442 208 LGTS 211 (356)
Q Consensus 208 lGTS 211 (356)
+||-
T Consensus 296 l~~~ 299 (380)
T COG1867 296 LGTK 299 (380)
T ss_pred cccH
Confidence 6654
No 202
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=36.37 E-value=35 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEeCCCcCccCCCCCccCCCCc
Q 018442 29 LLQQKIAELAVMIKKS-KHLVAFTGAGISTSCGIPDFRGPKGV 70 (356)
Q Consensus 29 ~l~~~i~~la~~i~~a-k~Ivv~TGAGISt~sGIPdFR~~~G~ 70 (356)
...+.+..+++||..| .+|.|+.|||+.... +-.|+-.-|+
T Consensus 153 sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N-~~~l~~~tg~ 194 (241)
T COG3142 153 SALEGLDLLKRLIEQAKGRIIIMAGAGVRAEN-IAELVLLTGV 194 (241)
T ss_pred chhhhHHHHHHHHHHhcCCEEEEeCCCCCHHH-HHHHHHhcCc
Confidence 3456678899999977 799999999998753 5555443343
No 203
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.14 E-value=16 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.3
Q ss_pred cccccCCCCCccchh
Q 018442 138 FREICPSCGVEYMRD 152 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d 152 (356)
...+|..||..+..+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 457999999877543
No 204
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.04 E-value=23 Score=33.61 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=28.6
Q ss_pred ceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 129 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 129 ~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
-|+.+.|+ .|..|+-.....+. ..+..+..+..| |.||..|
T Consensus 191 gvvpl~g~----~C~GC~m~l~~~~~-~~V~~~d~iv~C--P~CgRIL 231 (239)
T COG1579 191 GVVPLEGR----VCGGCHMKLPSQTL-SKVRKKDEIVFC--PYCGRIL 231 (239)
T ss_pred eEEeecCC----cccCCeeeecHHHH-HHHhcCCCCccC--CccchHH
Confidence 46677765 69999976655543 334447778899 8999765
No 205
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=35.94 E-value=37 Score=37.75 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHhccCCEEEEEccCCCc-ccc--ccccHHHh--cCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA--CNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~--~~lp~~a~--~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
+.+.++|++|++|+.... .|. .++ ..++ ++|+++|.|++..+.....+|+.|.
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i-~~a~~~~~GakliviDPr~t~ta~~Ad~~l~ 259 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRV-TDRRLSHPKVKVVVLSTFTHRSFDLADIGII 259 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHH-HHHHhccCCCEEEEECCCCCchhHHhCeeec
Confidence 467899999999987543 232 122 2223 4699999999998887777776543
No 206
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=35.94 E-value=20 Score=25.30 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=10.6
Q ss_pred ccccCCCCCccchh
Q 018442 139 REICPSCGVEYMRD 152 (356)
Q Consensus 139 ~~~C~~C~~~y~~d 152 (356)
+.+|..|+..|..+
T Consensus 1 ky~C~~CgyvYd~~ 14 (47)
T PF00301_consen 1 KYQCPVCGYVYDPE 14 (47)
T ss_dssp EEEETTTSBEEETT
T ss_pred CcCCCCCCEEEcCC
Confidence 36899999888543
No 207
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.76 E-value=21 Score=29.45 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=7.9
Q ss_pred CcEEEEeCCCcCcc
Q 018442 45 KHLVAFTGAGISTS 58 (356)
Q Consensus 45 k~Ivv~TGAGISt~ 58 (356)
++|+.+++||+||+
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 34556666666653
No 208
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.25 E-value=1.1e+02 Score=25.23 Aligned_cols=67 Identities=16% Similarity=0.059 Sum_probs=39.9
Q ss_pred ccCCEEEEEccCCCccccccccHHHhc--CCCeEEEEcCcCCC------CCCCccEEEEccHHHHHHHHHHHhcc
Q 018442 200 RMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTP------KDKKASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 200 ~~aDLlLvlGTSl~V~P~~~lp~~a~~--~g~~lV~IN~~~t~------~d~~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.|++.+=..+.+...+..+....++ .+.++|.-....+. .....|..+.|+.+..+.+|++.+.-
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 567776544444333333334333333 23555544444332 23468999999999999999998853
No 209
>PRK13936 phosphoheptose isomerase; Provisional
Probab=34.96 E-value=43 Score=30.36 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=40.4
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCC---CccEEEEccH
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDK---KASLVVHAPV 253 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~---~~dl~I~g~~ 253 (356)
...++.|++|.+-.|....-..+....++++|.++|.|-- ..++..+ .+|+.|.-..
T Consensus 107 ~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~ 167 (197)
T PRK13936 107 ALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPA 167 (197)
T ss_pred HhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCC
Confidence 4457889999999998877777777788889999887654 3344433 3676665444
No 210
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=34.67 E-value=66 Score=30.32 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=43.8
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 251 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g 251 (356)
..+.+-|++|++..|............++++|+++|.|-....+..+.+|+.|.-
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 4567889999999988887777777888999999998876555666677777653
No 211
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=34.53 E-value=1.2e+02 Score=30.28 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=14.8
Q ss_pred ccEEEEccHHHHHHHHHHHh
Q 018442 245 ASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 245 ~dl~I~g~~d~vl~~l~~~L 264 (356)
..+.|.+|+.-+++-|+..+
T Consensus 290 ~~v~V~~DATI~~PLl~a~~ 309 (329)
T PRK00805 290 KKVQVFVDATIALPLVAHAL 309 (329)
T ss_pred ceEEEEEehhhHHHHHHHHH
Confidence 34668888888888877555
No 212
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.51 E-value=19 Score=28.86 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=10.2
Q ss_pred cEEEEeCCCcCcc
Q 018442 46 HLVAFTGAGISTS 58 (356)
Q Consensus 46 ~Ivv~TGAGISt~ 58 (356)
+|++.+|+|+||+
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4788888888875
No 213
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=34.24 E-value=72 Score=31.26 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCCccccccccCCCCHHHHHHHHHHHcCCceEEEec
Q 018442 35 AELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQ 114 (356)
Q Consensus 35 ~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~pe~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQ 114 (356)
.+..++|-++.++||..|.| |||..+..+| +.--..-.+ . ..+-..|+++.+.. .++|.+
T Consensus 174 ~~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~-~~GVeAVID-K-----------DlasalLA~~i~AD--~liILT 233 (312)
T COG0549 174 AEAIKALLESGHVVIAAGGG-----GIPVVEEGAG-LQGVEAVID-K-----------DLASALLAEQIDAD--LLIILT 233 (312)
T ss_pred HHHHHHHHhCCCEEEEeCCC-----CcceEecCCC-cceeeEEEc-c-----------HHHHHHHHHHhcCC--EEEEEe
Confidence 45667777899999999987 9999998887 321111000 0 12234456655433 479999
Q ss_pred cccchHhhcCCC
Q 018442 115 NVDSLHLRSGIP 126 (356)
Q Consensus 115 NIDgLh~rAG~~ 126 (356)
.||+-+.--|-|
T Consensus 234 dVd~Vy~n~gkp 245 (312)
T COG0549 234 DVDAVYVNFGKP 245 (312)
T ss_pred ccchheecCCCc
Confidence 999877776654
No 214
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=34.05 E-value=38 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+-++++++|++|++.+++.|.|+..
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~~ 40 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENLE 40 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcCc
Confidence 3468899999999999999999863
No 215
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=33.74 E-value=49 Score=29.61 Aligned_cols=62 Identities=26% Similarity=0.452 Sum_probs=39.9
Q ss_pred CCCh-hHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCC-CCccccccccCCCCH
Q 018442 24 FDPP-HLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKG-VPEASLPFDRAMPSI 94 (356)
Q Consensus 24 ~~~~-~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~-~pe~~~~f~~a~P~~ 94 (356)
+||. +.+.+--++|++.++.++.|+|+.|+- -|||. |++.....-.+ .|...++...+-|+.
T Consensus 99 tdPkG~~is~vk~~L~~~~r~~~eV~v~iGSR----eGiP~-----GlfRfAd~VvDlaP~~t~aTe~~ipsa 162 (173)
T PF14419_consen 99 TDPKGDPISEVKDKLAEDLRYAKEVVVFIGSR----EGIPR-----GLFRFADYVVDLAPGVTFATEHAIPSA 162 (173)
T ss_pred ECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcc----cCCCh-----hHHHHhhhhhhcCCceEEeehhhhHHH
Confidence 5665 567777899999999999999999975 47763 66654332111 144444444444443
No 216
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=33.70 E-value=59 Score=26.76 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCcc---------CCCCCccCCC
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTS---------CGIPDFRGPK 68 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~---------sGIPdFR~~~ 68 (356)
+.++++++-.. +.++||+-||-=.-+ .|=|+|.||-
T Consensus 7 ~rvk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGPL 51 (107)
T PRK14717 7 KRIKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGPL 51 (107)
T ss_pred HHHHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCcccccc
Confidence 45666666555 455666665433333 4559999983
No 217
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.67 E-value=82 Score=25.47 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.1
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEccH
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPV 253 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g~~ 253 (356)
..+.+-|++|++-.+.......++...++++|.++|.|-. ..++..+.+|..|.-..
T Consensus 56 ~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~ 113 (139)
T cd05013 56 ANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS 113 (139)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCC
Confidence 3467789999999888877777777778888999776544 45556666777665443
No 218
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.92 E-value=74 Score=28.74 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=42.3
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc-CcCCCCCCCccEEEEcc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAP 252 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN-~~~t~~d~~~dl~I~g~ 252 (356)
...++-|++|++-.|..+.-.......++++|.++|.|- ....+..+.+|+.|.-.
T Consensus 107 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~ 163 (192)
T PRK00414 107 AVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVP 163 (192)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 446788999999999988877787788888999977664 44556666777776533
No 219
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=32.78 E-value=19 Score=23.62 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=14.3
Q ss_pred cCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCC
Q 018442 134 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 174 (356)
Q Consensus 134 HG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg 174 (356)
.|.+...+|.+|+..+.. + -+.| |.|++
T Consensus 6 ~~~l~~~rC~~Cg~~~~p----------P-r~~C--p~C~s 33 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQFP----------P-RPVC--PHCGS 33 (37)
T ss_dssp TT-EEEEE-TTT--EEES-------------SEE--TTTT-
T ss_pred CCEEEEEEcCCCCCEecC----------C-CcCC--CCcCc
Confidence 356667899999975311 1 2578 78875
No 220
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=32.65 E-value=40 Score=25.36 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=23.1
Q ss_pred ccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCC
Q 018442 216 PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIP 269 (356)
Q Consensus 216 P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP 269 (356)
|++.=+..+.+--+-+|+||++.. +++++||.++|
T Consensus 22 P~Cgs~~~te~W~G~~iIidpe~S-------------------eIAkrlgi~~P 56 (64)
T COG2093 22 PVCGSTDLTEEWFGLLIIIDPEKS-------------------EIAKRLGIKIP 56 (64)
T ss_pred CCCCCcccchhhccEEEEEcCcHH-------------------HHHHHhCCCCC
Confidence 444443344444566788887764 48889999888
No 221
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=32.54 E-value=69 Score=34.95 Aligned_cols=45 Identities=29% Similarity=0.405 Sum_probs=31.0
Q ss_pred HHHhccCCEEEEEccCCCc-ccccc-ccHHHhcCCC-eEEEEcCcCCC
Q 018442 196 EENCRMADVVLCLGTSLQI-TPACN-LPLKSLRGGG-KIVIVNLQQTP 240 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V-~P~~~-lp~~a~~~g~-~lV~IN~~~t~ 240 (356)
.+.+.+||++|++|+.... .|... ....+.++|+ +++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4567899999999998643 44322 2234555664 99999998654
No 222
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=32.45 E-value=72 Score=33.74 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=32.3
Q ss_pred CcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 20 MSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 20 ~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+....+++.+++-++.++++|.+||+.+|++|+.+|.
T Consensus 185 ~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r 222 (557)
T COG3961 185 LQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSR 222 (557)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhh
Confidence 33444567888899999999999999999999999985
No 223
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.41 E-value=49 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCC
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGA 53 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGA 53 (356)
+-++.++.+.+.|.+|+++||.||.
T Consensus 21 D~eeEve~ireyi~sA~r~vV~t~N 45 (156)
T COG4019 21 DKEEEVEKIREYIVSAKRIVVATNN 45 (156)
T ss_pred chHHHHHHHHHHHhccceEEEecCC
Confidence 3467888999999999999999875
No 224
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=32.32 E-value=59 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.8
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEE
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV 234 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I 234 (356)
++.-|++|++-+|-+.+-..+....++++|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 788999999999999877777778899999998765
No 225
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=32.03 E-value=27 Score=29.14 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=17.2
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...+|..|+..|.... ...-.| |.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~~--------~~~~~C--P~Cgs~ 96 (114)
T PRK03681 69 AECWCETCQQYVTLLT--------QRVRRC--PQCHGD 96 (114)
T ss_pred cEEEcccCCCeeecCC--------ccCCcC--cCcCCC
Confidence 4469999997653321 011358 799965
No 226
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=31.98 E-value=23 Score=29.06 Aligned_cols=14 Identities=57% Similarity=0.833 Sum_probs=10.5
Q ss_pred CcEEEEeCCCcCcc
Q 018442 45 KHLVAFTGAGISTS 58 (356)
Q Consensus 45 k~Ivv~TGAGISt~ 58 (356)
++|++.+|+|+||+
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 46888888888874
No 227
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.00 E-value=49 Score=29.15 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=36.6
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc-CcCCCCCCCccEEEEcc
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAP 252 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN-~~~t~~d~~~dl~I~g~ 252 (356)
+.+-|++|++..|....-..+....++++|+++|.|- ...++..+.+|+.|.-.
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~ 127 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIP 127 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 5677888888888777776677677777888876553 34555555666665443
No 228
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.89 E-value=82 Score=34.40 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=33.6
Q ss_pred HHHhccCCEEEEEccCCC-ccccc---cc-cH-----H-----HhcCC-----CeEEEEcCcCCCCCCCcc
Q 018442 196 EENCRMADVVLCLGTSLQ-ITPAC---NL-PL-----K-----SLRGG-----GKIVIVNLQQTPKDKKAS 246 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~-V~P~~---~l-p~-----~-----a~~~g-----~~lV~IN~~~t~~d~~~d 246 (356)
.+++..||++|++|+-.. ..|.. ++ +. . +.++| +++|.|++..|..-..+|
T Consensus 218 ~~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad 288 (676)
T cd02756 218 YEDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAE 288 (676)
T ss_pred HHHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhh
Confidence 456889999999998633 34432 22 10 0 11123 699999999998777665
No 229
>PRK07524 hypothetical protein; Provisional
Probab=30.77 E-value=47 Score=34.70 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
...+++++++|++|++.||++|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 188 PAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCChH
Confidence 46799999999999999999999985
No 230
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.73 E-value=82 Score=25.43 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=33.1
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeecc--CCccccccCCCCCccc
Q 018442 89 RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYM 150 (356)
Q Consensus 89 ~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elH--G~~~~~~C~~C~~~y~ 150 (356)
...++..|+.|..|++.|.+..+-+.|-- ..+++. ..-....|.+||+.+.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~~-----------~~y~~~~~~~h~H~~C~~Cg~i~~ 84 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDGK-----------ARYELNTDEHHHHLICTKCGKVID 84 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCCc-----------eEEEeCCCCCCCceEeCCCCCEEE
Confidence 34557789999999999999876554411 122221 1223489999998653
No 231
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.48 E-value=23 Score=28.33 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=11.1
Q ss_pred cEEEEeCCCcCccC
Q 018442 46 HLVAFTGAGISTSC 59 (356)
Q Consensus 46 ~Ivv~TGAGISt~s 59 (356)
+|++.+|+|++|+.
T Consensus 4 kILvvCgsG~~TS~ 17 (94)
T PRK10310 4 KIIVACGGAVATST 17 (94)
T ss_pred eEEEECCCchhHHH
Confidence 68888888888764
No 232
>COG1773 Rubredoxin [Energy production and conversion]
Probab=30.39 E-value=27 Score=25.63 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=11.6
Q ss_pred cccccCCCCCccchh
Q 018442 138 FREICPSCGVEYMRD 152 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d 152 (356)
.+++|..||..|..+
T Consensus 2 ~~~~C~~CG~vYd~e 16 (55)
T COG1773 2 KRWRCSVCGYVYDPE 16 (55)
T ss_pred CceEecCCceEeccc
Confidence 468999999888543
No 233
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=30.13 E-value=82 Score=30.99 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCCccccccccCCCCHHHHHHHHHHHcCCceEEEeccc
Q 018442 37 LAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNV 116 (356)
Q Consensus 37 la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~pe~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQNI 116 (356)
..+.+-+...|||++|.| |||.+.+.+.++.... ..+ . ...=..++...+.. +.|+-++|
T Consensus 174 ~I~~LL~~G~iVI~~ggg-----giPvi~e~~~~~g~e~-~id-------~-----D~lAa~lA~~l~AD--~LIiLTDV 233 (310)
T TIGR00746 174 TIKTLVENGVIVISSGGG-----GVPVVLEGAELKGVEA-VID-------K-----DLASEKLAEEVNAD--ILVILTDV 233 (310)
T ss_pred HHHHHHHCCCEEEeCCCC-----CcCEEecCCeEEeeEe-cCC-------H-----HHHHHHHHHHhCCC--EEEEEeCC
Confidence 333333455788888765 8999887544321110 000 0 11112233444333 45777789
Q ss_pred cchHhhcC
Q 018442 117 DSLHLRSG 124 (356)
Q Consensus 117 DgLh~rAG 124 (356)
||++..-+
T Consensus 234 dGVy~~~~ 241 (310)
T TIGR00746 234 DAVYINYG 241 (310)
T ss_pred CceeCCCC
Confidence 99997533
No 234
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=30.12 E-value=26 Score=29.68 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=17.0
Q ss_pred cccccCCCCCccchh-hHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRD-FEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d-~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...+| .|++.|..+ +..... ...-.| |.||+.
T Consensus 69 ~~~~C-~Cg~~~~~~~~~~~~~---~~~~~C--P~Cgs~ 101 (124)
T PRK00762 69 VEIEC-ECGYEGVVDEDEIDHY---AAVIEC--PVCGNK 101 (124)
T ss_pred eeEEe-eCcCcccccccchhcc---ccCCcC--cCCCCC
Confidence 34699 999876433 111100 001258 799864
No 235
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=29.58 E-value=3.2e+02 Score=27.64 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHhccCCCCcccccceeeeecccC
Q 018442 251 APVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYS 285 (356)
Q Consensus 251 g~~d~vl~~l~~~L~~~iP~~~~~~~~~~~~~~~~ 285 (356)
..+|.+++.+.+.+ +.|+++.......-..+|+
T Consensus 188 ~NIDal~e~i~~~I--ptP~rd~~~~p~m~v~RSF 220 (415)
T COG5257 188 ANIDALIEAIEKYI--PTPERDLDKPPRMYVARSF 220 (415)
T ss_pred cCHHHHHHHHHHhC--CCCccCCCCCceEEEEeec
Confidence 47888888887776 6677776655443334444
No 236
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=29.15 E-value=54 Score=34.89 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
++.+++++++|++|++.||+.|.|+.
T Consensus 195 ~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 195 DEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcchH
Confidence 56799999999999999999999985
No 237
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.82 E-value=1.7e+02 Score=32.34 Aligned_cols=41 Identities=7% Similarity=0.168 Sum_probs=20.3
Q ss_pred hHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcC
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 238 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~ 238 (356)
++...+.+.+---=|+|||.+.... -++|.. .-+.++|.+.
T Consensus 523 ~~~~l~~~~~ge~dILiGTQmiaKG-~~fp~v-----tLVgvl~aD~ 563 (730)
T COG1198 523 LEDLLDQFANGEADILIGTQMIAKG-HDFPNV-----TLVGVLDADT 563 (730)
T ss_pred HHHHHHHHhCCCCCeeecchhhhcC-CCcccc-----eEEEEEechh
Confidence 4444444543333356899765433 234322 2355666653
No 238
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.65 E-value=58 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=21.7
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcC
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 238 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~ 238 (356)
..+|||+||.|+|+--.|. -.|.+++++..+.
T Consensus 38 p~dAeLviV~G~sipnd~~--------l~GKkv~i~d~~~ 69 (103)
T COG3925 38 PNDAELVIVFGSSIPNDSA--------LNGKKVWIGDIER 69 (103)
T ss_pred CCcccEEEEeccccCCCcc--------ccCceEEEecHHH
Confidence 3478999999999754332 2467777765554
No 239
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.59 E-value=57 Score=34.48 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
+..+++++++|++|++.||+.|.|+..+
T Consensus 193 ~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4679999999999999999999999654
No 240
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=28.54 E-value=63 Score=32.43 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=31.5
Q ss_pred HHHHhccCCEEEEEccCCCc-ccccccc-HHHh-cCCCeEEEEcCcC
Q 018442 195 AEENCRMADVVLCLGTSLQI-TPACNLP-LKSL-RGGGKIVIVNLQQ 238 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V-~P~~~lp-~~a~-~~g~~lV~IN~~~ 238 (356)
..+.+.+||++|++|+-+.. .|...+- +.+. +.+.+++.|++..
T Consensus 142 sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 45678899999999998764 4544432 2333 4578999999876
No 241
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=28.52 E-value=22 Score=30.53 Aligned_cols=36 Identities=36% Similarity=0.755 Sum_probs=23.1
Q ss_pred CccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 136 NSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 136 ~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
.-....|..|+..+.+...+.. .--+| +.|++.|+.
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~-----~~~~C--~~C~~~l~~ 155 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKR-----KRYRC--GRCGGPLVQ 155 (157)
T ss_pred cceEEEcCCCCCEeeeecccch-----hhEEC--CCCCCEEEE
Confidence 4467899999987754433211 11368 689998764
No 242
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.49 E-value=43 Score=20.62 Aligned_cols=22 Identities=36% Similarity=0.967 Sum_probs=13.8
Q ss_pred ccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 141 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 141 ~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.|+.|+++.... ...| |.||-.
T Consensus 2 ~CP~C~~~V~~~-----------~~~C--p~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPES-----------AKFC--PHCGYD 23 (26)
T ss_pred cCCCCcCCchhh-----------cCcC--CCCCCC
Confidence 588888765221 2468 788854
No 243
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=28.46 E-value=57 Score=34.49 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
...+++++++|++|++.+|++|.|...+
T Consensus 183 ~~~i~~~~~~L~~A~rP~i~~G~g~~~~ 210 (579)
T TIGR03457 183 ATSLAQAARLLAEAKFPVIISGGGVVMG 210 (579)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcccc
Confidence 3568899999999999999999999643
No 244
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=28.44 E-value=63 Score=33.87 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 30 LQQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 30 l~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+..+++++++|++|++.|++.|.|...
T Consensus 191 ~~~~i~~a~~~L~~AkrPvil~G~g~~~ 218 (539)
T TIGR03393 191 LRAFRDAAENKLAMAKRVSLLADFLALR 218 (539)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeChhhcc
Confidence 3566899999999999999999999854
No 245
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=27.81 E-value=1.7e+02 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCceEEEec--ccc-chHhhcC
Q 018442 97 MALVELEKAGILKFVISQ--NVD-SLHLRSG 124 (356)
Q Consensus 97 ~aL~~L~~~g~l~~viTQ--NID-gLh~rAG 124 (356)
..|+.|.+.|.+..|+|+ |++ ++++--|
T Consensus 75 ~ii~~Li~~~~VD~iVtTganiehD~~~~lg 105 (316)
T PRK02301 75 GIVSDLIRDGHIDVLVTTGANLTHDVIEAIG 105 (316)
T ss_pred HHHHHHHHcCCeeEEEcCCCchHHHHHHHcC
Confidence 345666777777666666 555 4444444
No 246
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.80 E-value=58 Score=34.57 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+.+++++++|++|++.||+.|.|+..
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 467999999999999999999999964
No 247
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.71 E-value=34 Score=27.76 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=40.3
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
..+.+-|++|++-.|-......+....++++|.++|.|-- ...+..+.+|..|.-
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~ 104 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYI 104 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEE
T ss_pred ccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEe
Confidence 4566788999999998888888887888889999887753 344445556555543
No 248
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=27.66 E-value=55 Score=32.18 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=30.4
Q ss_pred HhccCCEEEEEc--cCCCccccccccHHHhcCCCeEEEEcCcCCC
Q 018442 198 NCRMADVVLCLG--TSLQITPACNLPLKSLRGGGKIVIVNLQQTP 240 (356)
Q Consensus 198 ~~~~aDLlLvlG--TSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~ 240 (356)
..+..-.+||+| -|..+.-..+|......++.+...||++|..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv 59 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV 59 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH
Confidence 334445788888 3666666677776666777777899999864
No 249
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=27.61 E-value=62 Score=34.42 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
...+++++++|.+|++.||++|.|+..+
T Consensus 189 ~~~i~~~~~~L~~AkrPvIl~G~g~~~~ 216 (588)
T TIGR01504 189 RAQIEKAVEMLNAAERPLIVAGGGVINA 216 (588)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcchh
Confidence 4679999999999999999999999743
No 250
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=27.44 E-value=1.9e+02 Score=23.83 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=42.9
Q ss_pred hHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCc
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPY 271 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~ 271 (356)
+....+.++.||++|+-|-+-. +...| ...|.+.+.. ... +.++++|.+|.+.|....|+|
T Consensus 54 ~~~~~~~l~~c~vvi~~~IG~~--a~~~L----~~~gI~~~~~--~~~-----------~~v~eal~~l~~~~~~~~~~w 114 (119)
T TIGR02663 54 IAPKIEALKDCAILYCLAIGGP--AAAKV----VAAKIHPIKV--NEP-----------ESISELLERLQKMLKGNPPPW 114 (119)
T ss_pred HHHHHHHhCCCcEEEEhhcCcc--HHHHH----HHcCCeeEec--CCC-----------ccHHHHHHHHHHHHcCCCCHH
Confidence 4444566789999999887632 22222 3355566443 111 369999999999999999999
Q ss_pred ccc
Q 018442 272 VRV 274 (356)
Q Consensus 272 ~~~ 274 (356)
-++
T Consensus 115 ~~~ 117 (119)
T TIGR02663 115 LRK 117 (119)
T ss_pred HHh
Confidence 754
No 251
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.13 E-value=1.4e+02 Score=31.10 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=45.0
Q ss_pred cCCEEEEEccCCCccccccccHHHhc--CCCeEEEEcCcCCCCC-------CCccEEEEccHHHHHHHHHHHhc
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKD-------KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~--~g~~lV~IN~~~t~~d-------~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..|++.+-.++.+...+.++...+++ .+.++|.=....|... ...|.++.|..++.+.+|++.|.
T Consensus 63 ~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 63 CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 67887765554444445455444443 4788887777766542 24799999999999999998873
No 252
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=27.07 E-value=55 Score=28.70 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCC
Q 018442 30 LQQKIAELAVMIKKSKHLVAFTGAG 54 (356)
Q Consensus 30 l~~~i~~la~~i~~ak~Ivv~TGAG 54 (356)
-.+.++.+.+.|.+||+|||.|..+
T Consensus 21 k~EEv~~Ir~~I~nakkIvV~t~N~ 45 (154)
T PF11576_consen 21 KEEEVEAIREYILNAKKIVVATNNE 45 (154)
T ss_dssp -HHHHHHHHHHHHH-S-EEE----H
T ss_pred cHHHHHHHHHHHhcCceEEEecCCc
Confidence 3466788889999999999988754
No 253
>PRK13937 phosphoheptose isomerase; Provisional
Probab=26.83 E-value=74 Score=28.50 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 27 PHLLQQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 27 ~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
.+.+++.+++++++|+++++| .+.|.|-|..
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI-~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKI-LLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEE-EEEeCcHhHH
Confidence 467788889999999999986 6678888853
No 254
>PRK15482 transcriptional regulator MurR; Provisional
Probab=26.76 E-value=1.1e+02 Score=29.13 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=45.3
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEccH
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPV 253 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g~~ 253 (356)
...+.+-|++|++..|..+.........++++|+++|.|-- ..++..+.+|+.|.-..
T Consensus 177 ~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 177 SQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 34677889999999999988888888888999999887754 45566677887776433
No 255
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=26.65 E-value=63 Score=34.30 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+.+++++++|++|++.+|+.|.|+-.
T Consensus 204 ~~~v~~a~~~L~~AkrPvil~G~g~~~ 230 (585)
T CHL00099 204 IKRIEQAAKLILQSSQPLLYVGGGAII 230 (585)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCch
Confidence 457899999999999999999999953
No 256
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=26.62 E-value=71 Score=32.53 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=51.1
Q ss_pred HHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC------CCccEEEEccHHHHHHHHHHHhc
Q 018442 193 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD------KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 193 ~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d------~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
++..++++.+|++|.|.|-|-.--..|+.- ...+++.|...|.... ....+.|-.++..+++.|.+.|.
T Consensus 331 ~amR~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 331 SKMRELLQGADMVLMLSTMLHSIAVGNLLP----SGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHHHHHhccCCeehhHHHHHHHHhhccccc----ccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 345568889999999999887666666521 1237778777775533 25678899999999999998874
No 257
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=26.55 E-value=72 Score=36.56 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=39.6
Q ss_pred HhccCCEEEEEccCCCc--ccccc---ccHHHhcCC-CeEEEEcCcCCCCC----CCccEE--EEccHHHHH
Q 018442 198 NCRMADVVLCLGTSLQI--TPACN---LPLKSLRGG-GKIVIVNLQQTPKD----KKASLV--VHAPVDKVI 257 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V--~P~~~---lp~~a~~~g-~~lV~IN~~~t~~d----~~~dl~--I~g~~d~vl 257 (356)
++.++|++|++|++-.. .|+.+ ....++.+| .++|.|++..+... ..+|.+ |+-..|.+|
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~AL 353 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSAL 353 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHH
Confidence 67889999999998544 23222 223455565 79999999998843 445655 454555544
No 258
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.46 E-value=92 Score=26.72 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeecc--CCccccccCCCCCccc
Q 018442 89 RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYM 150 (356)
Q Consensus 89 ~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elH--G~~~~~~C~~C~~~y~ 150 (356)
..-+.-.|+.|..|++.|.+..+-..|-- ..+++. +.-..+.|..||+.+.
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~-----------~~y~~~~~~~H~H~iC~~Cg~i~~ 101 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGK-----------SVFELTQQHHHDHLICLDCGKVIE 101 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCc-----------EEEEeCCCCCCCceEECCCCCEEE
Confidence 34457789999999999998777655411 122221 1113479999998653
No 259
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.33 E-value=1.1e+02 Score=28.80 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCc-CCCCCCCccEEEEc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 251 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~-~t~~d~~~dl~I~g 251 (356)
.+...+.+-|++|++.-|............++++|+++|.|--. ..+..+.+|+.|..
T Consensus 168 ~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 168 ATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 34456889999999988887777777777888999998877554 55666788888864
No 260
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=26.19 E-value=62 Score=34.28 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
.+.+++++++|++|++.||++|.|+.
T Consensus 187 ~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 187 VEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchh
Confidence 45799999999999999999999996
No 261
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=26.17 E-value=35 Score=29.50 Aligned_cols=29 Identities=34% Similarity=0.760 Sum_probs=20.1
Q ss_pred CCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 135 GNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 135 G~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
|.+-..+|.+||+.|... -..| |+|+..-
T Consensus 25 ~kl~g~kC~~CG~v~~PP-----------r~~C--p~C~~~~ 53 (140)
T COG1545 25 GKLLGTKCKKCGRVYFPP-----------RAYC--PKCGSET 53 (140)
T ss_pred CcEEEEEcCCCCeEEcCC-----------cccC--CCCCCCC
Confidence 677778999999876322 1257 7888653
No 262
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=26.17 E-value=63 Score=34.09 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+++++++|.+|++.+|+.|.|+--
T Consensus 200 ~~~l~~~~~~L~~AkrPvIi~G~g~~~ 226 (569)
T PRK09259 200 PEAVDRALDLLKKAKRPLIILGKGAAY 226 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 467999999999999999999999953
No 263
>PRK02947 hypothetical protein; Provisional
Probab=26.04 E-value=1.1e+02 Score=28.89 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=31.0
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcC
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 238 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~ 238 (356)
.+.+.|++|++-.|....-...+...++++|.++|.|--.+
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 56778888888888777777777777788888887775543
No 264
>PF14353 CpXC: CpXC protein
Probab=26.03 E-value=31 Score=28.90 Aligned_cols=16 Identities=44% Similarity=1.078 Sum_probs=11.3
Q ss_pred cCCccccccCCCCCcc
Q 018442 134 HGNSFREICPSCGVEY 149 (356)
Q Consensus 134 HG~~~~~~C~~C~~~y 149 (356)
-|+++...|+.||+.+
T Consensus 33 ~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCcCEEECCCCCCce
Confidence 5777777777777654
No 265
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=25.95 E-value=62 Score=35.92 Aligned_cols=59 Identities=7% Similarity=0.005 Sum_probs=36.6
Q ss_pred hccCCEEEEEccCCCc----------cccccccHHHh---cC-CCeEEEEcCcCCCCCCC-ccEE--EEccHHHHH
Q 018442 199 CRMADVVLCLGTSLQI----------TPACNLPLKSL---RG-GGKIVIVNLQQTPKDKK-ASLV--VHAPVDKVI 257 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V----------~P~~~lp~~a~---~~-g~~lV~IN~~~t~~d~~-~dl~--I~g~~d~vl 257 (356)
+.++|++|+.|+.... +|...+...++ ++ |+++|.|++..|..-.. +|.. |+-..|-+|
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l~irPGTD~AL 283 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHLYVNPQTDVAL 283 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEeccCCCcHHHH
Confidence 5789999999987532 23323222222 23 48999999999987654 4543 443444433
No 266
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=25.78 E-value=67 Score=33.93 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+..+++++++|++|++.||+.|.|+..
T Consensus 200 ~~~i~~~~~~L~~AkrPvil~G~g~~~ 226 (578)
T PRK06112 200 PQRLAEAASLLAQAQRPVVVAGGGVHI 226 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 467899999999999999999999853
No 267
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=25.66 E-value=84 Score=30.71 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-C---CCCCccEEEEc---cHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-P---KDKKASLVVHA---PVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~---~d~~~dl~I~g---~~d~vl~~l~~~L~ 265 (356)
+..+.+.++||+||+|+.-. .-..+|...+.+.|.+-+.|+-... + +.....+.|.. ..+.+++++.++|.
T Consensus 205 Avk~la~~~Dl~iVVG~~nS-SNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l~ 282 (294)
T COG0761 205 AVKELAPEVDLVIVVGSKNS-SNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKLR 282 (294)
T ss_pred HHHHHhhcCCEEEEECCCCC-ccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 44566779999999996422 2236777888888888777765432 1 23355666665 45677777777763
No 268
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.56 E-value=66 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
+++++++++|.+|++| ++.|.|.|..
T Consensus 116 ~~l~~~~~~i~~a~~I-~i~G~G~s~~ 141 (278)
T PRK11557 116 EKLHECVTMLRSARRI-ILTGIGASGL 141 (278)
T ss_pred HHHHHHHHHHhcCCeE-EEEecChhHH
Confidence 6788899999999985 5667787743
No 269
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.53 E-value=71 Score=33.84 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
..+++++++|++|++.||+.|.|+..+
T Consensus 202 ~~~~~~~~~L~~A~rPvIl~G~g~~~~ 228 (570)
T PRK06725 202 MKLREVAKAISKAKRPLLYIGGGVIHS 228 (570)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCcccc
Confidence 468899999999999999999999643
No 270
>PRK08197 threonine synthase; Validated
Probab=25.53 E-value=34 Score=34.44 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.0
Q ss_pred ccccCCCCCccchh
Q 018442 139 REICPSCGVEYMRD 152 (356)
Q Consensus 139 ~~~C~~C~~~y~~d 152 (356)
.++|..|+++|..+
T Consensus 7 ~~~C~~Cg~~~~~~ 20 (394)
T PRK08197 7 HLECSKCGETYDAD 20 (394)
T ss_pred EEEECCCCCCCCCC
Confidence 47999999988543
No 271
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=25.51 E-value=19 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=17.3
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...+|..|++-..+.-.+..+ --+| |+|+..
T Consensus 3 ~eiRC~~CnklLa~~g~~~~l-----eIKC--pRC~ti 33 (51)
T PF10122_consen 3 KEIRCGHCNKLLAKAGEVIEL-----EIKC--PRCKTI 33 (51)
T ss_pred cceeccchhHHHhhhcCccEE-----EEEC--CCCCcc
Confidence 456899998754331111111 2378 788854
No 272
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.37 E-value=70 Score=34.19 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
.+.+++++++|++|++.||+.|.|..
T Consensus 211 ~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 211 PRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 46799999999999999999999996
No 273
>PRK04351 hypothetical protein; Provisional
Probab=25.31 E-value=27 Score=30.62 Aligned_cols=38 Identities=34% Similarity=0.697 Sum_probs=25.2
Q ss_pred cCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 134 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 134 HG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
-+.-+.++|..|+..|.+--... ..--+| -+|+|.|+.
T Consensus 107 ~~~~y~Y~C~~Cg~~~~r~Rr~n-----~~~yrC--g~C~g~L~~ 144 (149)
T PRK04351 107 QKKNYLYECQSCGQQYLRKRRIN-----TKRYRC--GKCRGKLKL 144 (149)
T ss_pred CCceEEEECCCCCCEeeeeeecC-----CCcEEe--CCCCcEeee
Confidence 45667899999998875542211 223478 589998754
No 274
>PRK06154 hypothetical protein; Provisional
Probab=25.22 E-value=70 Score=33.84 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
...+++++++|.+|++.+|+.|.|+..+
T Consensus 201 ~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 201 PVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 3568999999999999999999999754
No 275
>PRK07586 hypothetical protein; Validated
Probab=25.00 E-value=69 Score=33.23 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
...+++++++|++|++.||+.|.|+..+
T Consensus 184 ~~~v~~~~~~L~~A~rPvi~~G~g~~~~ 211 (514)
T PRK07586 184 PAAVEAAAAALRSGEPTVLLLGGRALRE 211 (514)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCcccch
Confidence 4578999999999999999999999643
No 276
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=24.81 E-value=1.7e+02 Score=23.33 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=36.8
Q ss_pred cCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCcccccceeeeecccCCCCCCCcceeeEEEeec
Q 018442 226 RGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGS 302 (356)
Q Consensus 226 ~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
...+++++++.+++. ...+++++++++||.++=. ...+++.| -....+|.+..+.
T Consensus 7 ~~~GrvhRf~~~~s~-----------~~~~L~~~I~~Rl~~d~~~---~~~~~L~Y--------lDDEgD~VllT~D 61 (86)
T cd06409 7 DPKGRVHRFRLRPSE-----------SLEELRTLISQRLGDDDFE---THLYALSY--------VDDEGDIVLITSD 61 (86)
T ss_pred CCCCCEEEEEecCCC-----------CHHHHHHHHHHHhCCcccc---CCcccEEE--------EcCCCCEEEEecc
Confidence 346788899988765 7999999999999987421 22344443 2334667655543
No 277
>PRK11269 glyoxylate carboligase; Provisional
Probab=24.51 E-value=75 Score=33.71 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
...+++++++|++|++.+|+.|.|+..+
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~~~ 217 (591)
T PRK11269 190 RAQIEKALEMLNAAERPLIVAGGGVINA 217 (591)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCccc
Confidence 4578899999999999999999998643
No 278
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.48 E-value=1.5e+02 Score=27.02 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=40.9
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCC---ccEEEEc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKK---ASLVVHA 251 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~---~dl~I~g 251 (356)
......+-|++|++-+|.+..-..+....++++|.++|.|-- ...+..+. +|+.|.=
T Consensus 103 l~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~i 163 (196)
T PRK10886 103 VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRI 163 (196)
T ss_pred HHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEc
Confidence 345677889999999999888887877888999999776643 44444442 4655543
No 279
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=24.47 E-value=76 Score=33.87 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+++++++|++|++.+|+.|.|+..
T Consensus 218 ~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 218 GKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 456899999999999999999999954
No 280
>PLN02470 acetolactate synthase
Probab=24.45 E-value=69 Score=33.95 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
.+.+++++++|++|++.||++|.|+.
T Consensus 202 ~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 202 KSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCChh
Confidence 46799999999999999999999985
No 281
>PLN02573 pyruvate decarboxylase
Probab=24.37 E-value=74 Score=33.81 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 30 LQQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 30 l~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
.+..+++++++|++|++.||+.|.|+..+
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~~~ 238 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLRVA 238 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhccc
Confidence 45779999999999999999999999643
No 282
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.20 E-value=76 Score=33.68 Aligned_cols=28 Identities=36% Similarity=0.549 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
+..+++++++|.+|++.+|++|.|+..+
T Consensus 187 ~~~i~~a~~~L~~A~rPvil~G~g~~~~ 214 (588)
T PRK07525 187 EQSLAEAAELLSEAKFPVILSGAGVVLS 214 (588)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 4678999999999999999999999643
No 283
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=24.14 E-value=1.1e+02 Score=34.12 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=32.8
Q ss_pred HHHhccCCEEEEEccCCC-ccccc---cc-cH-----HHhcC---------CCeEEEEcCcCCCCCCCcc
Q 018442 196 EENCRMADVVLCLGTSLQ-ITPAC---NL-PL-----KSLRG---------GGKIVIVNLQQTPKDKKAS 246 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~-V~P~~---~l-p~-----~a~~~---------g~~lV~IN~~~t~~d~~~d 246 (356)
.+.+..||++|++|+... ..|.. ++ +. .++++ ++++|.|++..+..-..+|
T Consensus 215 ~~D~~~Ad~iv~~G~Np~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~ad 284 (806)
T TIGR02693 215 YEDARLADTIVLWGANSYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVAE 284 (806)
T ss_pred HHHHHhCCEEEEECCChHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhhc
Confidence 356889999999998743 23321 11 11 12222 4799999999988655443
No 284
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.11 E-value=73 Score=33.66 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+++++++|++|++.||++|.|...
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~~ 219 (572)
T PRK08979 193 KGQIKRGLQALLAAKKPVLYVGGGAII 219 (572)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 467899999999999999999999953
No 285
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=24.07 E-value=69 Score=36.63 Aligned_cols=53 Identities=25% Similarity=0.555 Sum_probs=32.8
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQI 214 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V 214 (356)
-+|..||+++..+ ...| |+||+.--. +. ...++...+.+.++|-+ .|||-=-+
T Consensus 695 KrC~dcg~q~~~~-----------~~~c--P~Cgs~~v~------d~--~~~ve~lRelA~EvDeV-lIgTDPDt 747 (1187)
T COG1110 695 KRCRDCGEQFVDS-----------EDKC--PRCGSRNVE------DK--TETVEALRELALEVDEI-LIGTDPDT 747 (1187)
T ss_pred HHHhhcCceeccc-----------cccC--CCCCCcccc------cc--HHHHHHHHHHHhhcCEE-EEcCCCCC
Confidence 3899999876333 2378 799974211 11 12366667777789976 46775333
No 286
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=24.07 E-value=78 Score=33.45 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+++++++|++|++.||+.|.|+..
T Consensus 197 ~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 197 DMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 456899999999999999999999964
No 287
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.05 E-value=1.6e+02 Score=26.28 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHh---ccCCEEEEEccCCCccccccccHHHhc--CCCeEEEEcCcCCCCCCCccEEEEc-cHHHHHHHHHH
Q 018442 195 AEENC---RMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKDKKASLVVHA-PVDKVIAGVMR 262 (356)
Q Consensus 195 a~~~~---~~aDLlLvlGTSl~V~P~~~lp~~a~~--~g~~lV~IN~~~t~~d~~~dl~I~g-~~d~vl~~l~~ 262 (356)
+.+.+ .++||+|.+|+.+ +..+......+ ...+.|.++ +.. ...||+.+.- .-++.+..|-+
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~---y~~~~~ls~lk~f~~~~~i~l~--~~y-~pnA~~Sf~n~~~~~~~~~l~~ 158 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY---YYLSQMLSSLKHFSHIVTIAID--KYY-QPNADYSFPNLSKDEYLDYLRK 158 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc---hHHHHHHHHHHhhcCcEEEEec--CCC-CCCCceeccccCHHHHHHHHHH
Confidence 34555 7999999999987 33332223322 244555555 332 3456665411 24555555543
No 288
>PF02035 Coagulin: Coagulin; InterPro: IPR000275 Coagulogen is a gel-forming protein of hemolymph that hinders the spread of invaders by immobilising them [, ]. The protein contains a single 175- residue polypeptide chain; this is cleaved after Arg-18 and Arg-46 by a clotting enzyme contained in the hemocyte and activated by a bacterial endotoxin (lipopolysaccharide). Cleavage releases two chains of coagulin, A and B, linked by two disulphide bonds, together with the peptide C [, ]. Gel formation results from interlinking of coagulin molecules. Secondary structure prediction suggests the C peptide forms an alpha- helix, which is released during the proteolytic conversion of coagulogen to coagulin gel []. The beta-sheet structure and 16 half-cystines found in the molecule appear to yield a compact protein stable to acid and heat. Mammalian blood coagulation is based on the proteolytically induced polymerisation of fibrinogens. Initially, fibrin monomers noncovalently interact with each other. The resulting homopolymers are further stabilised when the plasma transglutaminase (TGase) intermolecularly cross-links epsilon-(gamma-glutamyl)lysine bonds. In crustaceans, hemolymph coagulation depends on the TGase-mediated cross-linking of specific plasma-clotting proteins, but without the proteolytic cascade. In horseshoe crabs, the proteolytic coagulation cascade triggered by lipopolysaccharides and beta-1,3-glucans leads to the conversion of coagulogen into coagulin, resulting in noncovalent coagulin homopolymers through head-to-tail interaction. Horseshoe crab TGase, however, does not cross-link coagulins intermolecularly. Recently, we found that coagulins are cross-linked on hemocyte cell surface proteins called proxins. This indicates that a cross-linking reaction at the final stage of hemolymph coagulation is an important innate immune system of horseshoe crabs [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region; PDB: 1AOC_A.
Probab=23.72 E-value=68 Score=27.69 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=36.8
Q ss_pred cCCCCCCcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCcc
Q 018442 14 DVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW 71 (356)
Q Consensus 14 ~~g~~~~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w 71 (356)
.-|.+|-.++- ..+..++|+++++.+.+-+- .+|-|.|.-++-|-||.- |-|
T Consensus 10 ep~~lgr~~~v--s~e~k~kiekaveava~e~~---vsgrgfs~f~~hpvfrec-gky 61 (174)
T PF02035_consen 10 EPGILGRKQIV--SQETKDKIEKAVEAVADESG---VSGRGFSIFSHHPVFREC-GKY 61 (174)
T ss_dssp STTTSSSSSS----HHHHHHHHHHHHHHHHCC----SSTTTCGGCCCSHHHHHH----
T ss_pred CCcccccceec--cHHHHHHHHHHHHHHHhhcC---ccccceeeecCChhHhhc-cce
Confidence 34777777654 35677889999998886664 489999999999999963 444
No 289
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=23.71 E-value=47 Score=36.98 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=28.4
Q ss_pred HHhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCc
Q 018442 197 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQ 237 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~ 237 (356)
..+.+||++|++|+.+.. .|. ......+.++|+++|.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999997654 443 22334566788888777765
No 290
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=23.61 E-value=79 Score=33.03 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
..+++++++|++|++.||+.|.|+..+
T Consensus 183 ~~i~~~~~~l~~A~rPvi~~G~g~~~~ 209 (539)
T TIGR02418 183 DAIDEVAEAIQNAKLPVLLLGLRASSP 209 (539)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcc
Confidence 468899999999999999999999643
No 291
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=23.60 E-value=1.1e+02 Score=33.92 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=37.5
Q ss_pred hccCCEEEEEccCCCc----------cccccccHHHh---cC-CCeEEEEcCcCCCCCCC--c-cEEEEccHHHHH
Q 018442 199 CRMADVVLCLGTSLQI----------TPACNLPLKSL---RG-GGKIVIVNLQQTPKDKK--A-SLVVHAPVDKVI 257 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V----------~P~~~lp~~a~---~~-g~~lV~IN~~~t~~d~~--~-dl~I~g~~d~vl 257 (356)
+.++|++|+.|+.... .|...+...++ ++ |+++|.|++..|..-.. + -+.|+-..|-+|
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 6789999999986532 23322222222 23 69999999999987653 2 255665555544
No 292
>PLN02569 threonine synthase
Probab=23.59 E-value=39 Score=35.34 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=18.9
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
.++|..|+++|..+.. ..+| .||+.|.
T Consensus 49 ~l~C~~Cg~~y~~~~~---------~~~C---~cgg~l~ 75 (484)
T PLN02569 49 FLECPLTGEKYSLDEV---------VYRS---KSGGLLD 75 (484)
T ss_pred ccEeCCCCCcCCCccc---------cccC---CCCCeEE
Confidence 4799999998854432 3478 4888763
No 293
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.58 E-value=80 Score=33.64 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+.+++++++|++|++.||+.|.|+..
T Consensus 200 ~~l~~a~~~L~~A~rPvil~G~g~~~ 225 (595)
T PRK09107 200 EAITEAVELLANAKRPVIYSGGGVIN 225 (595)
T ss_pred HHHHHHHHHHHhCCCcEEEECCcccc
Confidence 57999999999999999999999854
No 294
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=23.55 E-value=90 Score=32.78 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
..++.+++++++|++|++.+++.|.|+..
T Consensus 186 ~~~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 186 ALDACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 45678999999999999999999999964
No 295
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.47 E-value=1.3e+02 Score=28.63 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
....+.+-|++|++-.|....-...+...++++|+++|.|-- ..++..+.+|+.|.-
T Consensus 181 ~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 181 SAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 345678899999998888877777777788899999887644 345555667776653
No 296
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.29 E-value=79 Score=33.30 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
.+.+++++++|.+|++.+|++|.|...+
T Consensus 190 ~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 190 SRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4578999999999999999999999643
No 297
>PRK08617 acetolactate synthase; Reviewed
Probab=23.23 E-value=77 Score=33.21 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
...+++++++|++|++.+|+.|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 188 PEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 34688999999999999999999985
No 298
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.11 E-value=2.7e+02 Score=28.60 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=47.8
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhc--CCCeEEEEcCcCCCCC-------CCccEEEEccHHHHHHHHHH
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKD-------KKASLVVHAPVDKVIAGVMR 262 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~--~g~~lV~IN~~~t~~d-------~~~dl~I~g~~d~vl~~l~~ 262 (356)
..+...+.|++.+-.++.+...+..+....++ .+.++|.-....+... ...|.++.|..+..+.+|++
T Consensus 62 ~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~ 138 (472)
T TIGR03471 62 TLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAE 138 (472)
T ss_pred HHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHc
Confidence 33456678988877776666666666544443 4677888877766543 24689999999999988874
No 299
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=22.98 E-value=69 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
+++++++++|.+|++ |++.|.|.|...
T Consensus 116 ~~i~~~~~~i~~a~~-I~i~G~G~S~~~ 142 (284)
T PRK11302 116 SAINRAVDLLTQAKK-ISFFGLGASAAV 142 (284)
T ss_pred HHHHHHHHHHHcCCe-EEEEEcchHHHH
Confidence 568889999999987 577888877544
No 300
>TIGR02940 anfO_nitrog Fe-only nitrogenase accessory protein AnfO. Members of this protein family, called Anf1 in Rhodobacter capsulatus and AnfO in Azotobacter vinelandii, are found only in species with the Fe-only nitrogenase and are encoded immediately downstream of the structural genes in the above named species.
Probab=22.96 E-value=1.3e+02 Score=28.20 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCccCCCCccccccCCCCCCccccccccCCCCHHHHHHHHHHHc-CCceEEEeccccc----hHhhcCCCCCceeeccCC
Q 018442 62 PDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKA-GILKFVISQNVDS----LHLRSGIPREKLAELHGN 136 (356)
Q Consensus 62 PdFR~~~G~w~~~~~~~~~pe~~~~f~~a~P~~~H~aL~~L~~~-g~l~~viTQNIDg----Lh~rAG~~~~~v~elHG~ 136 (356)
--|...+|.|+..+...-... ...-=...|..|+.++.. +.-+-++++.+=| +++++|+ ++.+++|+
T Consensus 22 ~vye~~~~~W~~~~ei~~~v~-----~~~gl~~iR~~~~~~v~~L~dCkifva~~v~Gi~y~~Le~~g~---~iWe~~G~ 93 (214)
T TIGR02940 22 LLFEEDGGEWKVLTRIENAVC-----PAKGLAAVRASLADMVKQLDDVRVFLASDIRGIANGLLQAMGV---QIWLSEGP 93 (214)
T ss_pred EEEecCCCeEEEEEEEEeccC-----cccCHHHHHHHHHHHHHhcCCcEEEEEeecCCccHHHHHHCCc---eEEEeCCC
Confidence 345666677875543211000 011113457777777754 7888899999998 5799999 79999999
Q ss_pred ccc
Q 018442 137 SFR 139 (356)
Q Consensus 137 ~~~ 139 (356)
...
T Consensus 94 ~~~ 96 (214)
T TIGR02940 94 LLD 96 (214)
T ss_pred HHH
Confidence 753
No 301
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.82 E-value=1.3e+02 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=31.3
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 235 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN 235 (356)
...+.+-|++|++-.|-...-..++...++++|.++|.|-
T Consensus 42 ~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 42 LSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3567788999999888776666677777888999988763
No 302
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.80 E-value=56 Score=19.88 Aligned_cols=7 Identities=57% Similarity=1.398 Sum_probs=4.4
Q ss_pred cCCCCCc
Q 018442 142 CPSCGVE 148 (356)
Q Consensus 142 C~~C~~~ 148 (356)
|.+|+..
T Consensus 1 C~sC~~~ 7 (24)
T PF07754_consen 1 CTSCGRP 7 (24)
T ss_pred CccCCCc
Confidence 6677654
No 303
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.70 E-value=49 Score=28.66 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=7.2
Q ss_pred ccccCCCCCcc
Q 018442 139 REICPSCGVEY 149 (356)
Q Consensus 139 ~~~C~~C~~~y 149 (356)
..+|+.|+...
T Consensus 91 ~sRC~~CN~~L 101 (147)
T PF01927_consen 91 FSRCPKCNGPL 101 (147)
T ss_pred CCccCCCCcEe
Confidence 35788887543
No 304
>PRK09411 carbamate kinase; Reviewed
Probab=22.54 E-value=64 Score=31.62 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=37.3
Q ss_pred HHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCCccccccccCCCCHHHHHHHHHHHcCCceEEEeccc
Q 018442 37 LAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNV 116 (356)
Q Consensus 37 la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~pe~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQNI 116 (356)
+.+.+-++..|||.+|.| |||-..+.+|...... . ..+=..|+...+ -.++|+-+|+
T Consensus 168 ~I~~Ll~~G~IVI~~gGG-----GIPV~~~~~G~e~vID--k--------------D~~Aa~LA~~L~--Ad~LIiLTDV 224 (297)
T PRK09411 168 AIELLLKEGHVVICSGGG-----GVPVTEDGAGSEAVID--K--------------DLAAALLAEQIN--ADGLVILTDA 224 (297)
T ss_pred HHHHHHHCCCEEEecCCC-----CCCeEEcCCCeEEecC--H--------------HHHHHHHHHHhC--CCEEEEEeCc
Confidence 344444578888888776 6666554444321110 0 111223344433 2357899999
Q ss_pred cchHhhcCCC
Q 018442 117 DSLHLRSGIP 126 (356)
Q Consensus 117 DgLh~rAG~~ 126 (356)
||++..-|-|
T Consensus 225 dGV~~n~~~p 234 (297)
T PRK09411 225 DAVYENWGTP 234 (297)
T ss_pred hhhccCCCCC
Confidence 9999876644
No 305
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=22.53 E-value=61 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHH----hCCcEEEEeCCCcCccCCC
Q 018442 28 HLLQQKIAELAVMIK----KSKHLVAFTGAGISTSCGI 61 (356)
Q Consensus 28 ~~l~~~i~~la~~i~----~ak~Ivv~TGAGISt~sGI 61 (356)
..+..-.+.+|+.|+ +--+++|++-||+|-+|-|
T Consensus 74 ~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsL 111 (198)
T KOG1718|consen 74 ARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASL 111 (198)
T ss_pred chhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHH
Confidence 345555555555555 4568999999999999876
No 306
>PRK07064 hypothetical protein; Provisional
Probab=22.30 E-value=80 Score=32.96 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
.+.+++++++|.+|++.||++|.|+.
T Consensus 190 ~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 190 AAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCChH
Confidence 45788999999999999999999984
No 307
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.25 E-value=85 Score=33.17 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
...+++++++|++|++.+|+.|.|...+
T Consensus 207 ~~~~~~~~~~L~~AkrPvi~~G~g~~~~ 234 (569)
T PRK08327 207 PEDIARAAEMLAAAERPVIITWRAGRTA 234 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecccCCc
Confidence 4679999999999999999999999643
No 308
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=22.08 E-value=87 Score=32.68 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+..+++++++|++|++.+|+.|.|...
T Consensus 193 ~~~~~~~~~~L~~AkrPvIl~G~g~~~ 219 (530)
T PRK07092 193 PAALARLGDALDAARRPALVVGPAVDR 219 (530)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcch
Confidence 456889999999999999999999863
No 309
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=21.76 E-value=2.7e+02 Score=27.44 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCCccccccccCCCCHHHHHHHHHHHcCCc
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGIL 108 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~pe~~~~f~~a~P~~~H~aL~~L~~~g~l 108 (356)
.+-+.++.+.+++++.+..|++|=||--+++|+ ...|+.|.+.|.+
T Consensus 29 ~l~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGl----------------------------------r~ii~~Li~~g~V 74 (301)
T TIGR00321 29 RIGEADKIWKEMCFDEEITIFMGYAGNLVPSGM----------------------------------REIIAYLIQHGMI 74 (301)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccchhhH----------------------------------HHHHHHHHHcCCe
Confidence 344556666677755555556655555555676 3456777777777
Q ss_pred eEEEec--ccc-chHhhcC
Q 018442 109 KFVISQ--NVD-SLHLRSG 124 (356)
Q Consensus 109 ~~viTQ--NID-gLh~rAG 124 (356)
..|+|+ |++ ++++--|
T Consensus 75 d~ivtTganl~hD~~~~~g 93 (301)
T TIGR00321 75 DALVTTGANLEHDLIEALG 93 (301)
T ss_pred eEEEeCCCchHHHHHHHcC
Confidence 777777 555 4444443
No 310
>PRK15482 transcriptional regulator MurR; Provisional
Probab=21.76 E-value=82 Score=29.95 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
+++++++++|.+|++| .+.|.|.|..
T Consensus 123 ~~l~~~~~~i~~A~~I-~i~G~G~S~~ 148 (285)
T PRK15482 123 ARLQKIIEVISKAPFI-QITGLGGSAL 148 (285)
T ss_pred HHHHHHHHHHHhCCee-EEEEeChhHH
Confidence 4688899999999985 5778887743
No 311
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=21.74 E-value=61 Score=34.29 Aligned_cols=36 Identities=36% Similarity=0.629 Sum_probs=23.3
Q ss_pred cccCCCCCccchhhHHHhhccc----------------CCCCcCCCCCCCCccc
Q 018442 140 EICPSCGVEYMRDFEIETIGMK----------------KTPRRCSDVKCGSRLK 177 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~----------------~~~p~C~~p~Cgg~lr 177 (356)
..|.+|++.|..|..++....+ ...-+| |.||+.+.
T Consensus 89 v~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~--p~~g~~l~ 140 (558)
T COG0423 89 VECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRC--PECGGELN 140 (558)
T ss_pred eeccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcC--CCcCCccC
Confidence 4799999999777655432111 123478 78998765
No 312
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=21.73 E-value=1.1e+02 Score=29.77 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.3
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
.+.+-|++|.+-.|..++.+......+++.|.++|.|-- ...+..+.+|+.|.-
T Consensus 123 ~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 123 HLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 466789999999999988877777888889988776643 344455667776653
No 313
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.53 E-value=50 Score=25.69 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=10.7
Q ss_pred CcEEEEeCCCcCccC
Q 018442 45 KHLVAFTGAGISTSC 59 (356)
Q Consensus 45 k~Ivv~TGAGISt~s 59 (356)
++|++.+|+|++++.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 467888888887743
No 314
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=21.52 E-value=52 Score=30.80 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWT 72 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~ 72 (356)
..|..+.++++.-=.|||--|||.|--||- |+|+
T Consensus 113 knIk~~eDll~~gi~ivV~dGaG~sntsgt-------gvwE 146 (252)
T COG4588 113 KNIKGFEDLLKPGIGIVVNDGAGVSNTSGT-------GVWE 146 (252)
T ss_pred cccccHHHHhcCCceEEEeCCCcccCCCCc-------eehH
Confidence 357788899999999999999999999985 8886
No 315
>PRK08322 acetolactate synthase; Reviewed
Probab=21.48 E-value=92 Score=32.52 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
...+++++++|++|++.||++|.|+.
T Consensus 183 ~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 183 PKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 35788999999999999999999995
No 316
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=21.43 E-value=91 Score=31.80 Aligned_cols=69 Identities=26% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHhccCCEEEEEccCCCc---cccccccHHHhcC-------------------------CCeEEEEcCcCCCCCCCccE
Q 018442 196 EENCRMADVVLCLGTSLQI---TPACNLPLKSLRG-------------------------GGKIVIVNLQQTPKDKKASL 247 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V---~P~~~lp~~a~~~-------------------------g~~lV~IN~~~t~~d~~~dl 247 (356)
...+.++|++|++|+-... .-..++-..++++ |.+++.|+...+.....+|.
T Consensus 140 ~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~~~~v~~~~~~~~a~~a~~~~~~~pg~~~~~i~~~~~~~~~~ad~ 219 (472)
T cd02771 140 LRDIESADAVLVLGEDLTQTAPRIALALRQAARRKAVELAALSGIPKWQDAAVRNIAQGAKSPLFIVNALATRLDDIAAE 219 (472)
T ss_pred HHHHHhCCEEEEEeCCccccchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcccCCCCceEEeechhhhhhhhhhh
Q ss_pred EE---EccHHHHHHHHHHHh
Q 018442 248 VV---HAPVDKVIAGVMRHL 264 (356)
Q Consensus 248 ~I---~g~~d~vl~~l~~~L 264 (356)
.+ .|.-.++...|.+.+
T Consensus 220 ~~~~~pg~~~al~~~l~~~~ 239 (472)
T cd02771 220 SIRASPGGQARLGAALARAV 239 (472)
T ss_pred hhhhCcCCHHHHHHHHHhhC
No 317
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=21.41 E-value=84 Score=31.93 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
++.+++++++|++|++.+|+.|.|...
T Consensus 198 ~~~i~~~~~~l~~AkrPvi~~G~g~~~ 224 (432)
T TIGR00173 198 PESLDELWDRLNQAKRGVIVAGPLPPA 224 (432)
T ss_pred hhhHHHHHHHHhhcCCcEEEEcCCCcH
Confidence 467899999999999999999999853
No 318
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.34 E-value=2e+02 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 28 HLLQQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 28 ~~l~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+.+++.++.+++.|+++++|.++ |.|-|.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~-G~G~S~ 55 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC-GNGGSA 55 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE-eCcHhH
Confidence 45667788888889999988777 888774
No 319
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=21.25 E-value=93 Score=32.76 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+++++++|++|++.||+.|.|+..
T Consensus 194 ~~~~~~~~~~L~~A~rPvil~G~g~~~ 220 (572)
T PRK06456 194 RLALKKAAEILINAERPIILVGTGVVW 220 (572)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCcc
Confidence 356889999999999999999999953
No 320
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.14 E-value=29 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.702 Sum_probs=18.1
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc-----cceEecC
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK-----DTVLDWE 184 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr-----p~Vv~fg 184 (356)
...|.+||.+. +..| |.|+..+| |+|+.||
T Consensus 28 ~~fC~kCG~~t--------------I~~C--p~C~~~IrG~y~v~gv~~~g 62 (158)
T PF10083_consen 28 EKFCSKCGAKT--------------ITSC--PNCSTPIRGDYHVEGVFGLG 62 (158)
T ss_pred HHHHHHhhHHH--------------HHHC--cCCCCCCCCceecCCeeeeC
Confidence 34688887531 2357 67776665 5666664
No 321
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=21.04 E-value=2.5e+02 Score=27.80 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCceEEEec--ccc-chHhhcC
Q 018442 97 MALVELEKAGILKFVISQ--NVD-SLHLRSG 124 (356)
Q Consensus 97 ~aL~~L~~~g~l~~viTQ--NID-gLh~rAG 124 (356)
..|+.|.+.|.+..|+|+ |++ ++|+--|
T Consensus 72 ~ii~~Li~~~~VD~iVtTgani~hD~~~~lg 102 (312)
T PRK01221 72 GLIADLIKRGLFNVVITTCGTLDHDIARSFG 102 (312)
T ss_pred HHHHHHHHcCCeeEEEeCCCchHHHHHHHcC
Confidence 345566666666666665 554 3443333
No 322
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=21.01 E-value=1.5e+02 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 235 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN 235 (356)
...++..|+++++-+|...+-...+...++.+|+++|.+-
T Consensus 99 ~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vT 138 (243)
T COG4821 99 RLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138 (243)
T ss_pred HhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEe
Confidence 3467789999999999876555566667788999988773
No 323
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=20.91 E-value=96 Score=32.64 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
+.+++++++|.+|++.||+.|.|...
T Consensus 195 ~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 195 QQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccc
Confidence 57999999999999999999999964
No 324
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=20.86 E-value=99 Score=32.77 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
...+++++++|.+|++.+|+.|.|.-
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 190 PLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 45789999999999999999999985
No 325
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.75 E-value=54 Score=33.66 Aligned_cols=38 Identities=21% Similarity=0.569 Sum_probs=24.9
Q ss_pred cccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccc
Q 018442 140 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 179 (356)
Q Consensus 140 ~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~ 179 (356)
..|+.|++.|..-....-+.....--+| ..|+|.|..+
T Consensus 129 Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C--~~C~gelveD 166 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQLLDNETGEFHC--ENCGGELVED 166 (436)
T ss_pred ccCCccccchhhhHHHHhhcccCceEEE--ecCCCchhcc
Confidence 4899999998554333333333445689 5899987543
No 326
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=20.71 E-value=94 Score=32.63 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+++++++|++|++-||+.|.|+..
T Consensus 193 ~~~~~~~~~~L~~AkrPvi~~G~g~~~ 219 (554)
T TIGR03254 193 PDSVDRAVELLKDAKRPLILLGKGAAY 219 (554)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 567899999999999999999999964
No 327
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=20.71 E-value=2e+02 Score=29.36 Aligned_cols=81 Identities=15% Similarity=0.040 Sum_probs=53.0
Q ss_pred eEecCCCCChhchHHHHHHh-ccCCEEEEEccCCCc----cccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHH
Q 018442 180 VLDWEDALPPVEMNPAEENC-RMADVVLCLGTSLQI----TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 254 (356)
Q Consensus 180 Vv~fgE~lp~~~~~~a~~~~-~~aDLlLvlGTSl~V----~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d 254 (356)
.++|.+.|+++......+.+ ...+-..=|||.|.+ .|..+++ -|+|.||-+|.-+-+...-...++-.
T Consensus 309 ~Iv~S~~Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V-------~KLv~~~g~P~~KlSd~~~K~t~p~~ 381 (400)
T PRK05321 309 TLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIV-------IKLVECNGRPVAKLSDSPGKTMCDDP 381 (400)
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceE-------EEEEEECCeeeEEecCCCcccCCCCH
Confidence 47788899987666665553 345667789999975 3444443 37788886554433333344555667
Q ss_pred HHHHHHHHHhccC
Q 018442 255 KVIAGVMRHLNLW 267 (356)
Q Consensus 255 ~vl~~l~~~L~~~ 267 (356)
+++..+.+.++++
T Consensus 382 ~~~~~~~~~~~~~ 394 (400)
T PRK05321 382 EFLRYLRQVFGLP 394 (400)
T ss_pred HHHHHHHHHcCCC
Confidence 7788888888775
No 328
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=20.59 E-value=67 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 22 EIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 22 e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
++.+....++.++++++++|.+|.+-|++.|.|.|
T Consensus 24 ~~~~t~~~~~~~l~~~~~~l~~a~~~I~i~G~G~S 58 (326)
T PRK10892 24 GLAELDQYINQDFTLACEKMFWCKGKVVVMGMGKS 58 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHh
No 329
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.58 E-value=1.1e+02 Score=28.92 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=39.5
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~ 250 (356)
.+.+-|++|.+-.|..++.+......+++.|+++|.| |...++..+.+|+.|.
T Consensus 115 ~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~ 168 (257)
T cd05007 115 NLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA 168 (257)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence 4567899999999988888888878888899987655 4445555556666654
No 330
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.46 E-value=1e+02 Score=28.19 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEeCCCcCcc
Q 018442 28 HLLQQKIAELAVMIKKSKHLVAFTGAGISTS 58 (356)
Q Consensus 28 ~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~ 58 (356)
+.+++..+.+++.++++++|.++ |.|-|..
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~-G~GgSa~ 54 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC-GNGTSAA 54 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE-ECcHHHH
Confidence 45666666667777777887665 8887753
No 331
>PRK12474 hypothetical protein; Provisional
Probab=20.38 E-value=97 Score=32.27 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+.+++++++|++|++-||+.|.|+..
T Consensus 188 ~~~i~~~~~~L~~A~rPvil~G~g~~~ 214 (518)
T PRK12474 188 AETVERIAALLRNGKKSALLLRGSALR 214 (518)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccch
Confidence 457999999999999999999999864
No 332
>PRK04940 hypothetical protein; Provisional
Probab=20.38 E-value=86 Score=28.46 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=37.3
Q ss_pred ccceEec--CCCCChhchHHHHHHhcc----C--CEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCC
Q 018442 177 KDTVLDW--EDALPPVEMNPAEENCRM----A--DVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK 241 (356)
Q Consensus 177 rp~Vv~f--gE~lp~~~~~~a~~~~~~----a--DLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~ 241 (356)
.|++.+. ....|.+.++...+.+.+ . +=+++|||||-=+=+.. .+.+.|.+-|+|||--.|.
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~---La~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAER---IGFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHH---HHHHHCCCEEEECCCCChH
Confidence 5666543 223455555544444331 1 33678999996444333 3556788999999987663
No 333
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=20.36 E-value=1.3e+02 Score=31.42 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=43.4
Q ss_pred HHhccCCEEEEEccCCCcccccccc------H-HHhcCCCeEEEEcCcCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLP------L-KSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp------~-~a~~~g~~lV~IN~~~t~~--d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
-.+++|||+|.+|..+.-.-..++- . .+....+-+|-+...+-.. ...-.+.|.||+...|..++..+.
T Consensus 361 ~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~k 438 (675)
T KOG4166|consen 361 YAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLK 438 (675)
T ss_pred hhhhccceeEEecceeccccccchhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhh
Confidence 4678999999999876532222221 1 1222223355555554433 345678899999999999988764
No 334
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=20.28 E-value=99 Score=32.40 Aligned_cols=27 Identities=15% Similarity=0.455 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+.+++++++|++|++.||+.|.|+..
T Consensus 183 ~~~l~~~~~~L~~AkrPvIl~G~g~~~ 209 (548)
T PRK08978 183 AAELEQARALLAQAKKPVLYVGGGVGM 209 (548)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 356889999999999999999999853
No 335
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=20.19 E-value=1e+02 Score=32.42 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
..+++++++|.+|++.||++|.|...
T Consensus 189 ~~i~~~~~~L~~AkrPvi~~G~g~~~ 214 (558)
T TIGR00118 189 LQIKKAAELINLAKKPVILVGGGVII 214 (558)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccc
Confidence 45899999999999999999999853
No 336
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=20.10 E-value=1.6e+02 Score=27.28 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 251 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g 251 (356)
..+.+-|++|.+-.|..+.-..+....++++|+++|.| +...++..+.+|+.|.-
T Consensus 43 ~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 43 GMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 35678899999999988888888878888899886654 55566677777777654
No 337
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=20.08 E-value=95 Score=32.93 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
.+.+++++++|++|++.+|+.|.|+.
T Consensus 188 ~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 188 PAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchH
Confidence 45688999999999999999999984
No 338
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=20.00 E-value=49 Score=31.04 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=18.7
Q ss_pred CccccccccHHHhcCCCeEEEEcCcCCCC--CCCccEEEEc
Q 018442 213 QITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHA 251 (356)
Q Consensus 213 ~V~P~~~lp~~a~~~g~~lV~IN~~~t~~--d~~~dl~I~g 251 (356)
.++-+..+-......|.++++||++|..- +-.+++-|+.
T Consensus 9 KTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird 49 (238)
T PF03029_consen 9 KTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRD 49 (238)
T ss_dssp HHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGG
T ss_pred HHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHh
Confidence 33334444444455678899999998753 3345555555
Done!