Query 018442
Match_columns 356
No_of_seqs 192 out of 1300
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 2.8E-80 9.7E-85 597.6 22.0 273 2-275 2-280 (318)
2 3pki_A NAD-dependent deacetyla 100.0 1.7E-79 5.8E-84 597.3 20.5 274 2-276 2-281 (355)
3 1yc5_A NAD-dependent deacetyla 100.0 4.6E-63 1.6E-67 464.6 16.7 228 34-266 3-245 (246)
4 1ma3_A SIR2-AF2, transcription 100.0 3.8E-62 1.3E-66 460.2 17.5 230 31-265 2-247 (253)
5 3glr_A NAD-dependent deacetyla 100.0 2.3E-61 7.8E-66 460.9 19.9 230 33-267 10-266 (285)
6 1q14_A HST2 protein; histone d 100.0 1.4E-61 4.8E-66 476.2 18.8 246 19-267 1-288 (361)
7 3u31_A SIR2A, transcriptional 100.0 2.5E-62 8.6E-67 469.0 11.9 240 20-265 21-280 (290)
8 1q1a_A HST2 protein; ternary c 100.0 2.8E-61 9.5E-66 462.4 18.5 236 29-267 3-280 (289)
9 2hjh_A NAD-dependent histone d 100.0 1.7E-60 6E-65 468.4 21.7 241 33-276 35-328 (354)
10 1m2k_A Silent information regu 100.0 2.6E-61 8.9E-66 453.5 15.0 223 35-265 3-241 (249)
11 3riy_A NAD-dependent deacetyla 100.0 1.6E-61 5.5E-66 460.5 13.7 227 33-261 10-272 (273)
12 4iao_A NAD-dependent histone d 100.0 8.3E-60 2.8E-64 473.9 22.2 239 33-274 173-464 (492)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 4.6E-59 1.6E-63 453.0 19.2 232 32-267 29-305 (323)
14 1s5p_A NAD-dependent deacetyla 100.0 2E-58 6.8E-63 430.5 11.4 211 44-264 1-230 (235)
15 2c31_A Oxalyl-COA decarboxylas 93.5 0.2 7E-06 51.0 8.9 70 196-265 267-338 (568)
16 2q28_A Oxalyl-COA decarboxylas 92.7 0.27 9.4E-06 50.0 8.4 68 196-265 265-334 (564)
17 1ybh_A Acetolactate synthase, 92.5 0.27 9.3E-06 50.4 8.2 70 194-265 271-342 (590)
18 2pgn_A Cyclohexane-1,2-dione h 91.9 0.3 1E-05 50.1 7.6 69 194-265 264-334 (589)
19 3lq1_A 2-succinyl-5-enolpyruvy 91.9 0.36 1.2E-05 49.4 8.0 67 197-265 285-353 (578)
20 2iht_A Carboxyethylarginine sy 91.8 0.31 1.1E-05 49.7 7.6 68 195-265 281-351 (573)
21 4feg_A Pyruvate oxidase; carba 91.8 0.33 1.1E-05 50.0 7.8 69 194-266 269-339 (603)
22 1ozh_A ALS, acetolactate synth 91.2 0.4 1.4E-05 48.9 7.6 67 195-265 268-336 (566)
23 3eya_A Pyruvate dehydrogenase 90.9 0.4 1.4E-05 48.6 7.2 65 194-265 258-324 (549)
24 2uz1_A Benzaldehyde lyase; thi 90.7 0.37 1.3E-05 49.0 6.8 66 199-265 267-334 (563)
25 3hww_A 2-succinyl-5-enolpyruvy 90.4 0.46 1.6E-05 48.4 7.1 65 194-260 271-337 (556)
26 2pan_A Glyoxylate carboligase; 89.7 0.43 1.5E-05 49.1 6.3 70 194-265 286-357 (616)
27 2x7j_A 2-succinyl-5-enolpyruvy 88.8 0.84 2.9E-05 46.9 7.7 66 197-265 306-373 (604)
28 1v5e_A Pyruvate oxidase; oxido 88.2 1 3.5E-05 46.1 7.9 68 194-266 262-332 (590)
29 1q6z_A BFD, BFDC, benzoylforma 87.3 0.67 2.3E-05 46.6 5.8 71 194-265 259-330 (528)
30 1t9b_A Acetolactate synthase, 87.3 1.2 4E-05 46.7 7.8 71 195-265 350-429 (677)
31 1o97_D Electron transferring f 84.7 1.1 3.8E-05 42.7 5.5 59 201-264 259-318 (320)
32 1efv_A Electron transfer flavo 79.8 3.1 0.00011 39.5 6.6 60 201-265 253-313 (315)
33 1djl_A Transhydrogenase DIII; 79.3 3.1 0.0001 37.0 5.8 88 178-265 94-202 (207)
34 1pno_A NAD(P) transhydrogenase 79.2 5.1 0.00017 34.8 7.0 73 192-264 89-179 (180)
35 2vk8_A Pyruvate decarboxylase 78.5 2.3 7.7E-05 43.1 5.5 68 194-265 271-338 (563)
36 2fsv_C NAD(P) transhydrogenase 77.5 5.6 0.00019 35.2 6.9 86 179-264 96-202 (203)
37 1efp_A ETF, protein (electron 76.8 3.7 0.00013 38.8 6.1 59 201-264 248-307 (307)
38 2vbi_A Pyruvate decarboxylase; 76.8 2.7 9.1E-05 42.7 5.4 67 195-265 270-336 (566)
39 1d4o_A NADP(H) transhydrogenas 76.7 6.3 0.00021 34.3 6.8 74 192-265 88-179 (184)
40 1ovm_A Indole-3-pyruvate decar 76.2 2.9 0.0001 42.1 5.5 67 194-265 269-335 (552)
41 2wvg_A PDC, pyruvate decarboxy 75.9 2.7 9.1E-05 42.7 5.1 67 195-265 270-336 (568)
42 2lcq_A Putative toxin VAPC6; P 75.1 0.83 2.8E-05 39.0 0.9 29 138-177 131-159 (165)
43 2vpz_A Thiosulfate reductase; 73.7 3.8 0.00013 43.1 5.8 54 198-251 196-252 (765)
44 2e7z_A Acetylene hydratase AHY 73.3 2 6.8E-05 45.0 3.5 53 198-250 157-212 (727)
45 2vbf_A Branched-chain alpha-ke 68.9 2.1 7.2E-05 43.5 2.4 68 194-265 288-355 (570)
46 2iv2_X Formate dehydrogenase H 67.4 3 0.0001 43.5 3.3 54 198-251 163-218 (715)
47 2bru_C NAD(P) transhydrogenase 66.9 4.9 0.00017 35.0 3.9 71 194-264 98-186 (186)
48 2k5c_A Uncharacterized protein 65.2 5.8 0.0002 30.3 3.5 56 137-200 6-79 (95)
49 2ivf_A Ethylbenzene dehydrogen 64.9 5.4 0.00019 43.4 4.8 53 198-250 243-297 (976)
50 1h0h_A Formate dehydrogenase ( 63.2 4.4 0.00015 44.1 3.7 54 197-250 180-235 (977)
51 2nap_A Protein (periplasmic ni 61.5 5.7 0.00019 41.4 4.0 54 198-251 163-220 (723)
52 2nxw_A Phenyl-3-pyruvate decar 60.7 9.4 0.00032 38.6 5.4 68 194-265 282-349 (565)
53 6rxn_A Rubredoxin; electron tr 58.8 5.2 0.00018 27.2 2.1 36 137-175 2-39 (46)
54 1eu1_A Dimethyl sulfoxide redu 58.7 3.5 0.00012 43.5 1.9 53 198-250 174-237 (780)
55 3qrl_A Transcription initiatio 58.4 12 0.00042 31.3 4.8 52 294-345 33-86 (140)
56 3cf4_G Acetyl-COA decarboxylas 57.9 8.6 0.00029 32.6 3.9 23 34-56 24-46 (170)
57 1kqf_A FDH-N alpha, formate de 54.3 5.3 0.00018 43.7 2.4 53 198-250 219-274 (1015)
58 3cf4_G Acetyl-COA decarboxylas 53.9 9.4 0.00032 32.4 3.5 62 198-265 104-168 (170)
59 4ayb_P DNA-directed RNA polyme 53.2 6.8 0.00023 26.8 1.9 31 138-175 2-32 (48)
60 2kdx_A HYPA, hydrogenase/ureas 52.5 6.6 0.00023 31.6 2.1 28 137-175 71-99 (119)
61 1dx8_A Rubredoxin; electron tr 49.7 11 0.00037 27.9 2.7 16 136-151 4-19 (70)
62 3trj_A Phosphoheptose isomeras 49.7 23 0.00078 30.7 5.4 58 196-253 109-170 (201)
63 1ti6_A Pyrogallol hydroxytrans 49.4 5.4 0.00018 42.7 1.4 53 197-249 204-264 (875)
64 1tmo_A TMAO reductase, trimeth 49.1 6.2 0.00021 41.9 1.8 67 198-264 207-291 (829)
65 3a43_A HYPD, hydrogenase nicke 48.6 6.2 0.00021 32.9 1.4 21 132-152 63-83 (139)
66 1q16_A Respiratory nitrate red 47.4 6.5 0.00022 44.1 1.7 53 198-250 243-297 (1247)
67 3rls_A YAF9, protein AF-9 homo 47.3 34 0.0012 29.7 6.0 56 291-347 30-85 (175)
68 3ml1_A NAPA, periplasmic nitra 47.1 9.8 0.00034 40.5 3.0 53 198-250 175-231 (802)
69 1e2b_A Enzyme IIB-cellobiose; 46.7 6 0.00021 31.2 1.0 14 45-58 4-17 (106)
70 4rxn_A Rubredoxin; electron tr 45.8 18 0.00061 25.3 3.2 14 138-151 2-15 (54)
71 1tk9_A Phosphoheptose isomeras 45.5 15 0.0005 30.9 3.4 57 196-252 105-162 (188)
72 1twf_L ABC10-alpha, DNA-direct 43.9 12 0.00041 27.6 2.2 28 138-175 27-54 (70)
73 2gmg_A Hypothetical protein PF 42.6 15 0.00051 29.3 2.7 28 138-175 66-93 (105)
74 2epq_A POZ-, at HOOK-, and zin 42.1 21 0.00072 22.1 3.0 39 133-173 4-45 (45)
75 3pwf_A Rubrerythrin; non heme 40.9 12 0.0004 32.3 2.0 26 138-175 137-162 (170)
76 3i9v_3 NADH-quinone oxidoreduc 39.0 13 0.00045 39.4 2.4 55 196-251 387-468 (783)
77 3na7_A HP0958; flagellar bioge 38.4 22 0.00074 32.3 3.5 42 129-177 192-233 (256)
78 1e8j_A Rubredoxin; iron-sulfur 37.8 18 0.00062 25.0 2.2 14 138-151 2-15 (52)
79 2i2w_A Phosphoheptose isomeras 37.1 38 0.0013 29.2 4.8 57 197-253 127-184 (212)
80 2yva_A DNAA initiator-associat 36.9 26 0.0009 29.6 3.7 56 197-252 105-164 (196)
81 1ytl_A Acetyl-COA decarboxylas 33.5 19 0.00063 31.1 2.1 22 34-56 24-46 (174)
82 1lko_A Rubrerythrin all-iron(I 33.4 13 0.00044 32.4 1.1 28 137-175 153-180 (191)
83 2kn9_A Rubredoxin; metalloprot 32.2 19 0.00066 27.3 1.7 15 137-151 25-39 (81)
84 1vd4_A Transcription initiatio 32.2 23 0.00077 24.1 2.0 40 134-175 9-48 (62)
85 2xbl_A Phosphoheptose isomeras 32.0 41 0.0014 28.3 4.1 56 197-252 112-168 (198)
86 1tvm_A PTS system, galactitol- 31.6 13 0.00045 29.5 0.7 15 45-59 22-36 (113)
87 2v3b_B Rubredoxin 2, rubredoxi 31.3 19 0.00065 25.2 1.5 14 138-151 2-15 (55)
88 2f62_A Nucleoside 2-deoxyribos 31.2 96 0.0033 26.1 6.2 76 189-265 55-159 (161)
89 2xig_A Ferric uptake regulatio 30.4 52 0.0018 27.1 4.3 51 89-150 58-110 (150)
90 3emu_A Leucine rich repeat and 29.4 30 0.001 28.6 2.7 35 27-61 66-104 (161)
91 2yva_A DNAA initiator-associat 29.3 35 0.0012 28.7 3.2 31 28-59 25-55 (196)
92 3h0g_L DNA-directed RNA polyme 28.2 40 0.0014 24.3 2.7 28 139-176 21-48 (63)
93 3fxa_A SIS domain protein; str 28.0 32 0.0011 29.3 2.6 28 32-59 32-59 (201)
94 1s24_A Rubredoxin 2; electron 27.9 20 0.00069 27.6 1.2 15 137-151 33-47 (87)
95 3dnf_A ISPH, LYTB, 4-hydroxy-3 27.6 80 0.0027 29.6 5.5 73 192-265 200-279 (297)
96 3sho_A Transcriptional regulat 27.5 33 0.0011 28.6 2.6 57 195-251 81-138 (187)
97 1x92_A APC5045, phosphoheptose 27.0 47 0.0016 28.1 3.6 55 197-251 109-167 (199)
98 3c2q_A Uncharacterized conserv 26.5 33 0.0011 32.7 2.6 70 192-265 264-339 (345)
99 1g8k_A Arsenite oxidase; molyb 26.5 45 0.0015 35.3 4.0 68 197-264 220-317 (825)
100 3fxa_A SIS domain protein; str 25.6 31 0.0011 29.3 2.1 55 197-251 88-143 (201)
101 2l2q_A PTS system, cellobiose- 25.6 27 0.00091 27.3 1.6 12 47-58 7-18 (109)
102 3brc_A Conserved protein of un 25.5 40 0.0014 28.4 2.6 24 31-54 23-46 (156)
103 3sho_A Transcriptional regulat 25.0 58 0.002 27.1 3.7 29 31-60 26-54 (187)
104 3eya_A Pyruvate dehydrogenase 24.7 52 0.0018 32.9 3.9 26 31-56 188-213 (549)
105 1x92_A APC5045, phosphoheptose 24.5 67 0.0023 27.0 4.1 30 29-59 30-59 (199)
106 1jeo_A MJ1247, hypothetical pr 24.3 62 0.0021 26.7 3.8 36 199-234 80-115 (180)
107 1aoc_A Coagulogen; coagulation 24.3 44 0.0015 27.7 2.6 52 14-71 12-63 (175)
108 2gnr_A Conserved hypothetical 23.9 25 0.00087 29.3 1.2 29 134-175 42-70 (145)
109 3cvj_A Putative phosphoheptose 23.9 34 0.0012 30.2 2.1 38 199-236 106-143 (243)
110 3etn_A Putative phosphosugar i 23.1 40 0.0014 29.4 2.4 53 198-250 103-158 (220)
111 1vkr_A Mannitol-specific PTS s 23.0 19 0.00064 29.3 0.2 17 43-59 12-28 (125)
112 1yk4_A Rubredoxin, RD; electro 22.9 38 0.0013 23.3 1.7 13 139-151 2-14 (52)
113 3s4e_A Dual specificity protei 22.7 76 0.0026 25.3 3.9 32 30-61 67-98 (144)
114 1m3s_A Hypothetical protein YC 22.3 46 0.0016 27.7 2.6 25 31-56 24-48 (186)
115 3rgo_A Protein-tyrosine phosph 22.0 1E+02 0.0035 24.5 4.6 32 28-59 73-104 (157)
116 3fkj_A Putative phosphosugar i 22.0 52 0.0018 31.0 3.1 108 23-134 16-141 (347)
117 2vbi_A Pyruvate decarboxylase; 22.0 85 0.0029 31.4 4.9 29 29-57 194-222 (566)
118 1tk9_A Phosphoheptose isomeras 21.9 61 0.0021 26.9 3.3 32 28-60 26-57 (188)
119 3nbm_A PTS system, lactose-spe 21.8 24 0.00083 27.9 0.6 14 45-58 7-20 (108)
120 3cvj_A Putative phosphoheptose 21.6 76 0.0026 27.8 4.0 31 28-59 26-56 (243)
121 1ytl_A Acetyl-COA decarboxylas 21.6 50 0.0017 28.3 2.6 36 200-237 107-144 (174)
122 3irb_A Uncharacterized protein 21.3 32 0.0011 28.6 1.3 28 135-175 43-70 (145)
123 1mzb_A Ferric uptake regulatio 21.1 78 0.0027 25.4 3.6 51 89-150 50-102 (136)
124 1yuz_A Nigerythrin; rubrythrin 20.9 44 0.0015 29.3 2.2 27 137-175 169-195 (202)
125 3eyy_A Putative iron uptake re 20.8 51 0.0017 27.0 2.4 50 90-150 50-101 (145)
126 2wvg_A PDC, pyruvate decarboxy 20.4 83 0.0028 31.5 4.4 29 29-57 194-222 (568)
127 2j16_A SDP-1, tyrosine-protein 20.3 74 0.0025 27.1 3.5 30 31-60 104-133 (182)
128 2xbl_A Phosphoheptose isomeras 20.2 78 0.0027 26.4 3.6 30 29-59 33-62 (198)
129 1jeo_A MJ1247, hypothetical pr 20.1 54 0.0019 27.1 2.5 28 32-60 28-55 (180)
130 1ybh_A Acetolactate synthase, 20.0 73 0.0025 32.1 3.9 27 31-57 201-227 (590)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-80 Score=597.59 Aligned_cols=273 Identities=51% Similarity=0.870 Sum_probs=238.4
Q ss_pred cccccccCCCcccCCCCCCcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCC
Q 018442 2 SLGYAEKLSYREDVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVP 81 (356)
Q Consensus 2 ~~~ya~~l~~~~~~g~~~~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~p 81 (356)
|||||++||+|+|||+||+||+||+++++++++++|+++|++|++|||+|||||||+|||||||+++|+|+..+.+. .|
T Consensus 2 s~~ya~~l~~~~~~g~~~~~e~~d~p~~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~-~p 80 (318)
T 3k35_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL-AP 80 (318)
T ss_dssp -------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTC-CC
T ss_pred ccchhhhCCcccccCccCCccccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccC-CH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999765554 37
Q ss_pred ccccccccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhccc
Q 018442 82 EASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK 161 (356)
Q Consensus 82 e~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~ 161 (356)
+..+.|.+++||.+|++|++|++.|++++||||||||||+|||+++++|+|+|||++..+|..|++.|.++.....+..+
T Consensus 81 ~~~~~f~~a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 160 (318)
T 3k35_A 81 KFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLK 160 (318)
T ss_dssp CCSSCTTTCCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSC
T ss_pred HHHHHhhhCCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccC
Confidence 77788999999999999999999999999999999999999999989999999999999999999998776543322222
Q ss_pred CCCCcCCC------CCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc
Q 018442 162 KTPRRCSD------VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 235 (356)
Q Consensus 162 ~~~p~C~~------p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN 235 (356)
+++|+|+. +.|||.|||+||||||++|.+.++.|.+++++|||+|||||||+|+|+++||..+.++|+++|+||
T Consensus 161 p~~~~C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN 240 (318)
T 3k35_A 161 ATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (318)
T ss_dssp EEEEECCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEEC
T ss_pred CCCCcCcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 33456631 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCccccc
Q 018442 236 LQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVD 275 (356)
Q Consensus 236 ~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~~ 275 (356)
+++|+.|+.+|+.|+|+++++|++|+++|||+||+|+...
T Consensus 241 ~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~~~~ 280 (318)
T 3k35_A 241 LQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPR 280 (318)
T ss_dssp SSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCCSCB
T ss_pred CCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCCCCc
Confidence 9999999999999999999999999999999999999754
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=1.7e-79 Score=597.31 Aligned_cols=274 Identities=51% Similarity=0.865 Sum_probs=241.6
Q ss_pred cccccccCCCcccCCCCCCcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCCCCC
Q 018442 2 SLGYAEKLSYREDVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVP 81 (356)
Q Consensus 2 ~~~ya~~l~~~~~~g~~~~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~~~p 81 (356)
|||||++||+|+|||+||+||+||+++++++++++|+++|++|++|||+|||||||+|||||||+++|+|+....+.. |
T Consensus 2 s~~ya~~ls~~~~kg~~g~~E~~D~p~~l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~~~~-p 80 (355)
T 3pki_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLA-P 80 (355)
T ss_dssp -----------CCCCSCSCCCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHTTCC-C
T ss_pred ccchhhhCCcccccCcCCCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchhhccCC-h
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997665553 7
Q ss_pred ccccccccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhccc
Q 018442 82 EASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK 161 (356)
Q Consensus 82 e~~~~f~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~ 161 (356)
+..+.|.+++||.+|++|++|++.|++++||||||||||+|||++.++|+|||||++..+|..|++.|.++.....+..+
T Consensus 81 ~~~~~f~~a~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 160 (355)
T 3pki_A 81 KFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLK 160 (355)
T ss_dssp CCSSCTTTCCCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSC
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccC
Confidence 77788999999999999999999999999999999999999999888999999999999999999998776543322222
Q ss_pred CCCCcCC------CCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc
Q 018442 162 KTPRRCS------DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 235 (356)
Q Consensus 162 ~~~p~C~------~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN 235 (356)
.++|.|+ ++.|||.|||+||||||++|.+.++.|.+++++|||+|||||||+|+|+++||..+.++|+++|+||
T Consensus 161 ~~~~~C~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN 240 (355)
T 3pki_A 161 ATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (355)
T ss_dssp EEEEECCCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEEC
T ss_pred CCCCccccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 3334563 1479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCcccccc
Q 018442 236 LQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDL 276 (356)
Q Consensus 236 ~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~~~ 276 (356)
+++|+.|..+|+.|+|+++++|++|++.|||+||+|.....
T Consensus 241 ~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~~~~~~~ 281 (355)
T 3pki_A 241 LQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRV 281 (355)
T ss_dssp SSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCCCCSCEE
T ss_pred CCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCCCCCCce
Confidence 99999999999999999999999999999999999996553
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=4.6e-63 Score=464.63 Aligned_cols=228 Identities=36% Similarity=0.593 Sum_probs=195.9
Q ss_pred HHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccCCC-------CCCcccccc--------ccCCCCHHHHH
Q 018442 34 IAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGK-------GVPEASLPF--------DRAMPSITHMA 98 (356)
Q Consensus 34 i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~~~-------~~pe~~~~f--------~~a~P~~~H~a 98 (356)
+++++++|++|++|||+|||||||+||||||||++|+|+.+.... ..|+..|.| .+++||.+|++
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~Pn~~H~~ 82 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVL 82 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-----------CCTTBHHHHHHCHHHHHHHHHHHTGGGGGCCCCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccccCCCceecHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 578999999999999999999999999999999999998653211 123433432 58999999999
Q ss_pred HHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 99 LVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 99 L~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
|++|++.|++++||||||||||+|||+ ++|+|+||+++..+|+.|++.|..+.....+. ....|+| |.|||.|||
T Consensus 83 La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cgg~lrP 157 (246)
T 1yc5_A 83 LAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLC--DDCNSLIRP 157 (246)
T ss_dssp HHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBC--TTTCCBEEE
T ss_pred HHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhc-cCCCCCC--CCCCCccCc
Confidence 999999999999999999999999998 79999999999999999999887766554332 2357999 799999999
Q ss_pred ceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHH
Q 018442 179 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 258 (356)
Q Consensus 179 ~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~ 258 (356)
+||+|||++|++.++.+.+++++|||+|||||||+|+|+++++..++++|+++|+||+++++.+..+++.|.|+++++|+
T Consensus 158 ~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~ 237 (246)
T 1yc5_A 158 NIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFAR 237 (246)
T ss_dssp EECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHH
T ss_pred ceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 018442 259 GVMRHLNL 266 (356)
Q Consensus 259 ~l~~~L~~ 266 (356)
+|+++||+
T Consensus 238 ~l~~~lg~ 245 (246)
T 1yc5_A 238 RVMEEGGI 245 (246)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99999986
No 4
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=3.8e-62 Score=460.18 Aligned_cols=230 Identities=36% Similarity=0.565 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc-------ccCCCCHH
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF-------DRAMPSIT 95 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f-------~~a~P~~~ 95 (356)
++++++++++|++|++|||+|||||||+||||||||++|+|+.+.. ....|+..|.| ..++||.+
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~Pn~~ 81 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPA 81 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHHHHTCCCCHH
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccccCChhheecHHHHhcCHHHHHHHHHHHHHhccCCCCHH
Confidence 5689999999999999999999999999999999999999985421 12345555543 13999999
Q ss_pred HHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCC-
Q 018442 96 HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS- 174 (356)
Q Consensus 96 H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg- 174 (356)
|++|++|++.|++++||||||||||+|||+ ++|+|+||+++..+|+.|++.|..+.....+. ....|+| |.|||
T Consensus 82 H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cgg~ 156 (253)
T 1ma3_A 82 HYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFN-KGEIPRC--RKCGSY 156 (253)
T ss_dssp HHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHH-TTCCCCC--TTTCCS
T ss_pred HHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhc-cCCCCCC--CCCCCc
Confidence 999999999999999999999999999998 79999999999999999999887765544332 2347999 79999
Q ss_pred ccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHH
Q 018442 175 RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 254 (356)
Q Consensus 175 ~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d 254 (356)
.|||+||+|||++|++.++.+.+++++|||+|||||||+|+|+++|+..+.+.|+++|+||+++++.+..+++.|.|+++
T Consensus 157 ~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~ 236 (253)
T 1ma3_A 157 YVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAG 236 (253)
T ss_dssp CEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHH
T ss_pred cccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 018442 255 KVIAGVMRHLN 265 (356)
Q Consensus 255 ~vl~~l~~~L~ 265 (356)
++|++|++.|.
T Consensus 237 ~~l~~l~~~l~ 247 (253)
T 1ma3_A 237 EVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998873
No 5
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=2.3e-61 Score=460.92 Aligned_cols=230 Identities=27% Similarity=0.431 Sum_probs=199.9
Q ss_pred HHHHHHHHHHh--CCcEEEEeCCCcCccCCCCCccCCC-Ccccccc-CCCCCCcc-------------cccc------cc
Q 018442 33 KIAELAVMIKK--SKHLVAFTGAGISTSCGIPDFRGPK-GVWTLQR-EGKGVPEA-------------SLPF------DR 89 (356)
Q Consensus 33 ~i~~la~~i~~--ak~Ivv~TGAGISt~sGIPdFR~~~-G~w~~~~-~~~~~pe~-------------~~~f------~~ 89 (356)
.+++++++|++ |++|||+|||||||+||||||||++ |+|+..+ .+...|+. +|.| ..
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~~~~ 89 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGN 89 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhhhcc
Confidence 48899999997 8999999999999999999999995 9997543 33333332 2222 36
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCC
Q 018442 90 AMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD 169 (356)
Q Consensus 90 a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~ 169 (356)
++||.+|++|++|++.|++++||||||||||+|||+|+++|+|+||+++..+|..|++.|..+.....+. ...+|+|
T Consensus 90 a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-~~~~P~C-- 166 (285)
T 3glr_A 90 YKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-ADRVPRC-- 166 (285)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBC--
T ss_pred CCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-cCCCCCC--
Confidence 8999999999999999999999999999999999999999999999999999999999987765433332 3457999
Q ss_pred CCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCC----CCCCc
Q 018442 170 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKA 245 (356)
Q Consensus 170 p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~----~d~~~ 245 (356)
|.|||.|||+||||||++|++.+. +.+.+++|||+|||||||+|+|++.||.. .+.++++|+||++++. .++.+
T Consensus 167 ~~Cgg~lrP~IV~FGE~lp~~~~~-~~~~~~~aDlllviGTSl~V~Paa~l~~~-~~~~~~~v~IN~~~~~~~~~~~~~~ 244 (285)
T 3glr_A 167 PVCTGVVKPDIVFFGEPLPQRFLL-HVVDFPMADLLLILGTSLEVEPFASLTEA-VRSSVPRLLINRDLVGPLAWHPRSR 244 (285)
T ss_dssp TTTCCBEEEEECCTTSBCCGGGGG-HHHHHHHCSEEEEESCCCCEETTGGGGGS-SCTTSCEEEEESSCCTHHHHSCCTT
T ss_pred CCCCCccCCcEEEeCCcCCHHHHH-HHHHHhcCCEEEEeCCCCccccHHHHHHH-HhCCCcEEEECCCCcCccccCCCCc
Confidence 789999999999999999998774 57788999999999999999999999864 4567889999999986 56889
Q ss_pred cEEEEccHHHHHHHHHHHhccC
Q 018442 246 SLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 246 dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
|+.+.|+|++++++|++.|||+
T Consensus 245 d~~~~g~~~~~~~~L~~~lgw~ 266 (285)
T 3glr_A 245 DVAQLGDVVHGVESLVELLGWT 266 (285)
T ss_dssp EEEEESCHHHHHHHHHHHHTCH
T ss_pred cEEEcCCHHHHHHHHHHHhCCH
Confidence 9999999999999999999985
No 6
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=1.4e-61 Score=476.21 Aligned_cols=246 Identities=26% Similarity=0.412 Sum_probs=200.4
Q ss_pred CCcccCCChhHHHHHHHHHHHHHHh--CCcEEEEeCCCcCccCCCCCccCCC-Ccccccc-CCCCCCc------------
Q 018442 19 GMSEIFDPPHLLQQKIAELAVMIKK--SKHLVAFTGAGISTSCGIPDFRGPK-GVWTLQR-EGKGVPE------------ 82 (356)
Q Consensus 19 ~~~e~~~~~~~l~~~i~~la~~i~~--ak~Ivv~TGAGISt~sGIPdFR~~~-G~w~~~~-~~~~~pe------------ 82 (356)
||+++..+...++.+++.|+++|++ |++|||+|||||||+||||||||++ |+|+... .+...|+
T Consensus 1 ~~~~~~~~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P 80 (361)
T 1q14_A 1 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDP 80 (361)
T ss_dssp CTTSCCCSSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCC
T ss_pred CCCccCCCchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCH
Confidence 6889999999999999999999999 9999999999999999999999995 9998543 2322232
Q ss_pred -ccccc------ccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHH
Q 018442 83 -ASLPF------DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEI 155 (356)
Q Consensus 83 -~~~~f------~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~ 155 (356)
.+|.| ..++||.+|++|++|++.|++++||||||||||+|||++.++|+|+||+++..+|..|++.|..+...
T Consensus 81 ~~f~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~ 160 (361)
T 1q14_A 81 LPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFK 160 (361)
T ss_dssp HHHHHHHTTTSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHH
T ss_pred HHHHHHHHHHhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHH
Confidence 22322 37999999999999999999999999999999999999989999999999999999999998877655
Q ss_pred Hhhccc--CCCCcCCCCCCCCccccceEecCCCCChhchHHHHH-------------HhccCCEEEEEccCCCccccccc
Q 018442 156 ETIGMK--KTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEE-------------NCRMADVVLCLGTSLQITPACNL 220 (356)
Q Consensus 156 ~~~~~~--~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~-------------~~~~aDLlLvlGTSl~V~P~~~l 220 (356)
..+... ..+|+| |.|||.|||+||||||++|+..++.+.+ ++.+|||+|||||||+|+|+++|
T Consensus 161 ~~~~~~~~~~~P~C--p~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l 238 (361)
T 1q14_A 161 SKLAEHPIKDFVKC--DVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASL 238 (361)
T ss_dssp HHTTSSSCSCCCBC--TTTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGGGH
T ss_pred HHHhhcccCCCCCC--cCCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHHHH
Confidence 544322 236999 7999999999999999999987766655 57799999999999999999999
Q ss_pred cHHHhcCCCeEEEEcCcCCC----CCCCccEEEEccHHHHHHHHHHHhccC
Q 018442 221 PLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 221 p~~a~~~g~~lV~IN~~~t~----~d~~~dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
+..+. .|+++|+||+++++ .+..+++.|+|+++++|++|++.|||+
T Consensus 239 ~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~ 288 (361)
T 1q14_A 239 PEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 288 (361)
T ss_dssp HHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCH
T ss_pred HHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCCh
Confidence 87665 58999999999996 256799999999999999999999984
No 7
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=2.5e-62 Score=469.00 Aligned_cols=240 Identities=31% Similarity=0.432 Sum_probs=206.0
Q ss_pred CcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccC-CCCccccccCC--------CCCCcccccc---
Q 018442 20 MSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRG-PKGVWTLQREG--------KGVPEASLPF--- 87 (356)
Q Consensus 20 ~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~-~~G~w~~~~~~--------~~~pe~~~~f--- 87 (356)
+.++|+.++...+++++|+++|++|++|||+|||||||+|||||||+ ++|+|+.+... ...|+..|.|
T Consensus 21 ~~~~~~~~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~~~p~~~~~~~~f~~~p~~~w~~~~~ 100 (290)
T 3u31_A 21 LMISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRD 100 (290)
T ss_dssp ------CCCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGGSCHHHHTBHHHHHHCHHHHHHHHHH
T ss_pred hhhhccCcchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhcCCHHHhhCHHhhhhCHHHHHHHHHH
Confidence 67999999988899999999999999999999999999999999999 68999854321 1235555544
Q ss_pred ----ccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHh---hcc
Q 018442 88 ----DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIET---IGM 160 (356)
Q Consensus 88 ----~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~---~~~ 160 (356)
.+++||.+|++|++|++.|++++||||||||||+|||+ ++|+|+||+++..+|..|++.|..+..... ...
T Consensus 101 ~~~~~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~ 178 (290)
T 3u31_A 101 ISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFM 178 (290)
T ss_dssp HHHHSCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGGGSTTSSTT
T ss_pred HhhhccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhhhccccccc
Confidence 47999999999999999999999999999999999998 799999999999999999998866543321 112
Q ss_pred cCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCC
Q 018442 161 KKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP 240 (356)
Q Consensus 161 ~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~ 240 (356)
...+|+| | |||.|||+||||||++|++.++.+.+++++|||+|||||||+|+|+++||..++++|+++|+||+++|+
T Consensus 179 ~~~~P~C--~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~ 255 (290)
T 3u31_A 179 HQLPPEC--P-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTY 255 (290)
T ss_dssp TSSSCBC--T-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCT
T ss_pred ccCCCCC--C-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCC
Confidence 3457999 7 999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCC-CccEEEEccHHHHHHHHHHHhc
Q 018442 241 KDK-KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 241 ~d~-~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+. .+++.|+|+++++++ +++.|.
T Consensus 256 ~~~~~~d~~i~g~a~~vl~-~~~~l~ 280 (290)
T 3u31_A 256 ITNKMSDYHVCAKFSELTK-VANILK 280 (290)
T ss_dssp TTTTTCSEEEESCGGGHHH-HHHHHH
T ss_pred CCCccceEEEECCHHHHHH-HHHHHh
Confidence 875 689999999999886 555553
No 8
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=2.8e-61 Score=462.36 Aligned_cols=236 Identities=26% Similarity=0.410 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEeCCCcCccCCCCCccCCC-Ccccccc-CCCCCC-------------cccccc----
Q 018442 29 LLQQKIAELAVMIKK--SKHLVAFTGAGISTSCGIPDFRGPK-GVWTLQR-EGKGVP-------------EASLPF---- 87 (356)
Q Consensus 29 ~l~~~i~~la~~i~~--ak~Ivv~TGAGISt~sGIPdFR~~~-G~w~~~~-~~~~~p-------------e~~~~f---- 87 (356)
.++.++++++++|++ |++|||+|||||||+||||||||++ |+|+..+ .+...| +.+|.|
T Consensus 3 ~~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 3 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp CTHHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 356789999999999 9999999999999999999999995 9998543 232223 223322
Q ss_pred --ccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhccc--CC
Q 018442 88 --DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK--KT 163 (356)
Q Consensus 88 --~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~--~~ 163 (356)
..++||.+|++|++|++.|++++||||||||||+|||++.++|+|+||+++..+|..|++.|..+.....+... ..
T Consensus 83 ~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 162 (289)
T 1q1a_A 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKD 162 (289)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCS
T ss_pred hhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCC
Confidence 37999999999999999999999999999999999999989999999999999999999998877655544322 35
Q ss_pred CCcCCCCCCCCccccceEecCCCCChhchHHH-------------HHHhccCCEEEEEccCCCccccccccHHHhcCCCe
Q 018442 164 PRRCSDVKCGSRLKDTVLDWEDALPPVEMNPA-------------EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGK 230 (356)
Q Consensus 164 ~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a-------------~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~ 230 (356)
.|+| |.|||.|||+||||||++|++.++.+ .+.+++|||+|||||||+|+|+++|+..+. .|++
T Consensus 163 ~P~C--~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~ 239 (289)
T 1q1a_A 163 FVKC--DVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVK 239 (289)
T ss_dssp CCBC--TTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSE
T ss_pred CccC--CCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCC
Confidence 7999 79999999999999999998765433 244789999999999999999999987665 5899
Q ss_pred EEEEcCcCCC----CCCCccEEEEccHHHHHHHHHHHhccC
Q 018442 231 IVIVNLQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 231 lV~IN~~~t~----~d~~~dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
+|+||+++++ .+..+|+.|+|+++++|++|++.|||+
T Consensus 240 ~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~ 280 (289)
T 1q1a_A 240 RVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 280 (289)
T ss_dssp EEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred EEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence 9999999996 245799999999999999999999984
No 9
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-60 Score=468.39 Aligned_cols=241 Identities=24% Similarity=0.348 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCcccccc-CCCCC-------------Ccccccc------ccCCC
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQR-EGKGV-------------PEASLPF------DRAMP 92 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~-~~~~~-------------pe~~~~f------~~a~P 92 (356)
++++|+++|++|++|||+|||||||+||||||||++|+|+..+ .+... |+.+|.| ..++|
T Consensus 35 ~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~~~~~~~~~P 114 (354)
T 2hjh_A 35 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 114 (354)
T ss_dssp SHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGGGGCCCCSCC
T ss_pred HHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHHHHccccCCC
Confidence 5789999999999999999999999999999999999998532 23222 2222322 35789
Q ss_pred CHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCC---
Q 018442 93 SITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD--- 169 (356)
Q Consensus 93 ~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~--- 169 (356)
|++|++|++|++.|++.+||||||||||++||+++++|+|+|||++..+|..|++.|.++.....+. ....|+|+.
T Consensus 115 n~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~~P~Cp~C~~ 193 (354)
T 2hjh_A 115 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIR-NLELPLCPYCYK 193 (354)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCTTTHH
T ss_pred CHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhh-ccCCCcCccccc
Confidence 9999999999999999999999999999999999899999999999999999999887765554442 223566620
Q ss_pred ------------------------------CCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCcccccc
Q 018442 170 ------------------------------VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACN 219 (356)
Q Consensus 170 ------------------------------p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~ 219 (356)
+.|||.|||+||||||.+|++.++.+.+++++|||+|||||||+|+|+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Paa~ 273 (354)
T 2hjh_A 194 KRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSE 273 (354)
T ss_dssp HHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGGG
T ss_pred cccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhHHH
Confidence 24569999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCcccccc
Q 018442 220 LPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDL 276 (356)
Q Consensus 220 lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~~~ 276 (356)
++..+ ..++++|+||++++..+ .+|+.|+|+|+++|+.|++.|||+||++...+.
T Consensus 274 lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~~~~~~ 328 (354)
T 2hjh_A 274 IVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKKWNDL 328 (354)
T ss_dssp HHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCSTTHHHH
T ss_pred HHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchHHHHHh
Confidence 98755 45789999999999864 699999999999999999999999999876653
No 10
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=2.6e-61 Score=453.50 Aligned_cols=223 Identities=36% Similarity=0.559 Sum_probs=200.8
Q ss_pred HHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc--------ccCCCCHHHHH
Q 018442 35 AELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF--------DRAMPSITHMA 98 (356)
Q Consensus 35 ~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f--------~~a~P~~~H~a 98 (356)
++++++|++|++|||+|||||||+||||||||++|+|+.+.. ....|+..|.| .+++||.+|++
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~ 82 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQA 82 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccCCCHHhcccHHHHhcCHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 578999999999999999999999999999999999985421 11235555544 47999999999
Q ss_pred HHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcccc
Q 018442 99 LVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 178 (356)
Q Consensus 99 L~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp 178 (356)
|++|++.|++++||||||||||+|||. ++|+|+||+++..+|..|++.|..+.. + .....|+| |.|||.|||
T Consensus 83 La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~---~-~~~~~p~C--~~Cgg~lrP 154 (249)
T 1m2k_A 83 FAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESA---P-KIPPLPKC--DKCGSLLRP 154 (249)
T ss_dssp HHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSC---C-CSSSCCBC--SSSSSBEEE
T ss_pred HHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhh---c-cCCCCCCC--CCCCCCcCC
Confidence 999999999999999999999999997 799999999999999999998866543 1 12347999 799999999
Q ss_pred ceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHH
Q 018442 179 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 258 (356)
Q Consensus 179 ~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~ 258 (356)
+||+|||++|++.++.+.+++++|||+|||||||+|+|+++++..+++.|+++|+||+++++.+..+++.|.|+++++|+
T Consensus 155 ~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~ 234 (249)
T 1m2k_A 155 GVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234 (249)
T ss_dssp EECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHH
T ss_pred eEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 018442 259 GVMRHLN 265 (356)
Q Consensus 259 ~l~~~L~ 265 (356)
+|++.|.
T Consensus 235 ~l~~~l~ 241 (249)
T 1m2k_A 235 ELVRHVR 241 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 11
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=1.6e-61 Score=460.50 Aligned_cols=227 Identities=27% Similarity=0.486 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc--------ccCCCCHHH
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF--------DRAMPSITH 96 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f--------~~a~P~~~H 96 (356)
++++|+++|++|++|||+|||||||+||||||||++|+|+.+.. ....|+..|.| .+++||.+|
T Consensus 10 ~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~~~~~~~Pn~~H 89 (273)
T 3riy_A 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGH 89 (273)
T ss_dssp CHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhhCChhhcCCHHHHhhCHHHHHHHHHHHHHHhhhCCCCHHH
Confidence 47789999999999999999999999999999999999986432 11235555544 579999999
Q ss_pred HHHHHHHH----cCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhH--HHhh------------
Q 018442 97 MALVELEK----AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFE--IETI------------ 158 (356)
Q Consensus 97 ~aL~~L~~----~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~--~~~~------------ 158 (356)
++|++|++ .|++++||||||||||+|||+ ++|+|+|||++..+|..|++.|.+... ...+
T Consensus 90 ~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~~~~~~~ 167 (273)
T 3riy_A 90 RAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQD 167 (273)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCC
T ss_pred HHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCCcccccc
Confidence 99999995 699999999999999999998 799999999999999999988743210 0000
Q ss_pred --cccCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC
Q 018442 159 --GMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL 236 (356)
Q Consensus 159 --~~~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~ 236 (356)
-....+|+|+.|.|||.|||+||||||++|++.++++.+++++|||+|||||||+|+|+++|+..+.++|+++|+||+
T Consensus 168 ~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 247 (273)
T 3riy_A 168 ASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNT 247 (273)
T ss_dssp CCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEES
T ss_pred cccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECC
Confidence 012346899545799999999999999999999999999999999999999999999999999888889999999999
Q ss_pred cCCCCCCCccEEEEccHHHHHHHHH
Q 018442 237 QQTPKDKKASLVVHAPVDKVIAGVM 261 (356)
Q Consensus 237 ~~t~~d~~~dl~I~g~~d~vl~~l~ 261 (356)
++|+.+..+++.|+|+++++|++|+
T Consensus 248 ~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 248 ETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp SCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred CCCCCCcceeEEEeCCHHHHHHHHh
Confidence 9999999999999999999999885
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-60 Score=473.88 Aligned_cols=239 Identities=24% Similarity=0.336 Sum_probs=202.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCccccc-cCCCCCCc-------------ccccc------ccCCC
Q 018442 33 KIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQ-REGKGVPE-------------ASLPF------DRAMP 92 (356)
Q Consensus 33 ~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~-~~~~~~pe-------------~~~~f------~~a~P 92 (356)
++++++++|++|++|||+|||||||+||||||||++|+|+.. +.+...|+ .+|.+ ..++|
T Consensus 173 ~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~~~~~~~~P 252 (492)
T 4iao_A 173 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 252 (492)
T ss_dssp SHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGGGCCCSSCC
T ss_pred HHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHHhhCCcCCC
Confidence 468899999999999999999999999999999999999854 23333332 22222 25789
Q ss_pred CHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCC----
Q 018442 93 SITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCS---- 168 (356)
Q Consensus 93 ~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~---- 168 (356)
|++|++|++|++.|++.+||||||||||++||++.++|+|+||+++..+|..|++.|.++.....+. ....|+|+
T Consensus 253 n~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~-~~~~P~Cp~Cg~ 331 (492)
T 4iao_A 253 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIR-NLELPLCPYCYK 331 (492)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHH-TTCCCBCTTTHH
T ss_pred CHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHh-ccCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999887664433221 12234441
Q ss_pred -----------------------------CCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCcccccc
Q 018442 169 -----------------------------DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACN 219 (356)
Q Consensus 169 -----------------------------~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~ 219 (356)
++.|||.|||+||||||++|++.++.+.+.+++|||+|||||||+|+|+++
T Consensus 332 ~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA~ 411 (492)
T 4iao_A 332 KRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSE 411 (492)
T ss_dssp HHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETGGG
T ss_pred ccccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccchhh
Confidence 034679999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhccCCCCcccc
Q 018442 220 LPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRV 274 (356)
Q Consensus 220 lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~~~iP~~~~~ 274 (356)
|+..+ ..++++|+||+++++. ..+|+.|.|+||++++.|+++|||+||+-...
T Consensus 412 Lv~~a-~~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~~~~~ 464 (492)
T 4iao_A 412 IVNMV-PSHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPHKKWN 464 (492)
T ss_dssp HHHHS-BTTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCSTTHH
T ss_pred HHHHH-hcCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCChHHHH
Confidence 98665 4678999999999985 46899999999999999999999999965543
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=4.6e-59 Score=452.98 Aligned_cols=232 Identities=26% Similarity=0.424 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHh--CCcEEEEeCCCcCccCCCCCccCC-CCcccccc-CCCCCCc-------------ccccc------c
Q 018442 32 QKIAELAVMIKK--SKHLVAFTGAGISTSCGIPDFRGP-KGVWTLQR-EGKGVPE-------------ASLPF------D 88 (356)
Q Consensus 32 ~~i~~la~~i~~--ak~Ivv~TGAGISt~sGIPdFR~~-~G~w~~~~-~~~~~pe-------------~~~~f------~ 88 (356)
.++++++++|++ |++|||+|||||||+||||||||+ +|+|+..+ .+...|+ .+|.| .
T Consensus 29 ~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~~~~ 108 (323)
T 1j8f_A 29 LTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPG 108 (323)
T ss_dssp SSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHHhhC
Confidence 358899999997 999999999999999999999999 59998643 2222232 23322 4
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeeccCCccccccCC--CCCccchhhHHHhhcccCCCCc
Q 018442 89 RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS--CGVEYMRDFEIETIGMKKTPRR 166 (356)
Q Consensus 89 ~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~--C~~~y~~d~~~~~~~~~~~~p~ 166 (356)
.++||.+|++|++|++.|++++||||||||||++||++.++|+|+||+++..+|+. |++.|.+++....+. ...+|+
T Consensus 109 ~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-~~~~P~ 187 (323)
T 1j8f_A 109 QFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-SEVTPK 187 (323)
T ss_dssp SCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-TTCCCB
T ss_pred cCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-cCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999 999988776554442 345899
Q ss_pred CCCCCCCCccccceEecCCCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC---
Q 018442 167 CSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--- 243 (356)
Q Consensus 167 C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--- 243 (356)
| |.|||.|||+||+|||++|++.++.+.+++++|||+|||||||+|+|+++++..+.+. +++|+||+++++.+.
T Consensus 188 C--~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~-~~~v~IN~~~t~~~~~~~ 264 (323)
T 1j8f_A 188 C--EDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLS-TPRLLINKEKAGQSDPFL 264 (323)
T ss_dssp C--TTTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTT-CCEEEEESSCCCCCCHHH
T ss_pred C--cCCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcC-CcEEEEeCCCCCCCcccc
Confidence 9 7999999999999999999999999999999999999999999999999998776654 456799999998654
Q ss_pred -----------------CccEEEEccHHHHHHHHHHHhccC
Q 018442 244 -----------------KASLVVHAPVDKVIAGVMRHLNLW 267 (356)
Q Consensus 244 -----------------~~dl~I~g~~d~vl~~l~~~L~~~ 267 (356)
.+|+.|.|+|+++|++|++.|||+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 265 GMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK 305 (323)
T ss_dssp HHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTCH
T ss_pred cccccccccccccccccceeEEEeCCHHHHHHHHHHHcCCc
Confidence 489999999999999999999984
No 14
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=2e-58 Score=430.46 Aligned_cols=211 Identities=25% Similarity=0.433 Sum_probs=177.3
Q ss_pred CCcEEEEeCCCcCccCCCCCccCCCCccccccC--------CCCCCcccccc----------ccCCCCHHHHHHHHHHH-
Q 018442 44 SKHLVAFTGAGISTSCGIPDFRGPKGVWTLQRE--------GKGVPEASLPF----------DRAMPSITHMALVELEK- 104 (356)
Q Consensus 44 ak~Ivv~TGAGISt~sGIPdFR~~~G~w~~~~~--------~~~~pe~~~~f----------~~a~P~~~H~aL~~L~~- 104 (356)
|++|||+|||||||+||||||||++|+|+.... ....|+..|.| ..++||.+|++|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~a~Pn~~H~~La~L~~~ 80 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDA 80 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999999985421 12235554544 24999999999999999
Q ss_pred cCCceEEEeccccchHhhcCCCCCceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccccceEecC
Q 018442 105 AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWE 184 (356)
Q Consensus 105 ~g~l~~viTQNIDgLh~rAG~~~~~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lrp~Vv~fg 184 (356)
.|++++||||||||||+|||. ++|+|+||+++..+|..|++.|..+..+ .....|+| +.|||.|||+|||||
T Consensus 81 ~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~~~~p~c--~~Cgg~lrP~vv~FG 152 (235)
T 1s5p_A 81 LGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDV----TPEDKCHC--CQFPAPLRPHVVWFG 152 (235)
T ss_dssp HGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCC----CSSCCC---------CEEEEECCTT
T ss_pred hCCceEEEeccccchhhhcCC--CcEEEecCCceEEEeCCCCCcccchhhc----cCCCCCCC--CCCCCeecCcEEEeC
Confidence 699999999999999999995 7999999999999999999987655421 12335666 789999999999999
Q ss_pred CCCChhchHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHh
Q 018442 185 DALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 185 E~lp~~~~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L 264 (356)
|. | ..++++.+++++|||+|||||||+|+|+++|+..+++.|+++|+||+++++.+..+++.|+|+++++|++|++.|
T Consensus 153 E~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 153 EM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp SC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred CC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 99 7 469999999999999999999999999999999998899999999999999999999999999999999999887
No 15
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=93.50 E-value=0.2 Score=51.01 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=50.3
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.++++||+|++|+.+.-......+..-...+.++|.|+.++...++ ..++.|.+|+.++|++|.+.+.
T Consensus 267 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 267 AFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 456789999999999886322211111111146789999998876654 5689999999999999998874
No 16
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.67 E-value=0.27 Score=49.96 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.++++||+|.+|+.+.-....... ....+.++|.|+.++...++ ..++.|.+|+.++|++|.+.+.
T Consensus 265 ~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (564)
T 2q28_A 265 SFALANADVVMLVGARLNWLLAHGKK--GWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK 334 (564)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGTT--TSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HhHhhcCCEEEEECCccccccccccc--ccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 45678999999999988532111101 11246789999998876653 5789999999999999988774
No 17
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.54 E-value=0.27 Score=50.38 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=52.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+.+|||+|.+|+.+.-.-...+. ....+.++|.|+.++...++ ..++.|.+|+.++|++|.+.|.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLE--AFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGG--GTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCccc--ccCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 4456778999999999988532222221 12246789999999887664 6799999999999999988774
No 18
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.92 E-value=0.3 Score=50.12 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=51.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++|++|.+|+.+.-.... + .....+.++|.|+.++...++ ..++.|.||+.++|+.|.+.+.
T Consensus 264 ~~~~~l~~aDlvl~iG~~~~~~~~~-~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 264 SANDMMAAADFVLVLGSRLSDWGIA-Q--GYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHHCSEEEEESCCCCTTTTT-T--TTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCEEEEECCCccccccc-c--cccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 3456678899999999987543322 2 111246789999999877654 5799999999999999998875
No 19
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=91.85 E-value=0.36 Score=49.42 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..+.+|||+|.+|+.+.-.+...+ .....+.++|.|+.++...++ ..++.|.||+.++|+.|.+.+.
T Consensus 285 ~~~~~aDlvl~~G~~~~~~~~~~~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 285 IDKLTPEVVIRFGSMPVSKPLKNW--LEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHTCCSEEEEESSCCSCHHHHHH--HHHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred cccCCCCEEEEeCCcccchhHHHH--HhcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 357799999999997653333333 112356899999999876653 5789999999999999988775
No 20
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.83 E-value=0.31 Score=49.74 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=51.4
Q ss_pred HHHHhccCCEEEEEccC-CCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTS-LQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTS-l~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.++++|++|.+|+. +.-.....+. ...+.++|.|+.++...++ ..++.|.||+..+++.|.+.+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 44668899999999997 6432222221 1146799999999887665 5789999999999999988875
No 21
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.82 E-value=0.33 Score=49.99 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=52.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++|||+|.+|+.+....+. .....+.++|.|+.++...++ ..++.|.+|+..+|+.|.+.+..
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~~~~----~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 339 (603)
T 4feg_A 269 PANEALAQADVVLFVGNNYPFAEVS----KAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE 339 (603)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTT----TTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCEEEEECCCCCccccc----ccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc
Confidence 3456788999999999998642221 112346789999999877654 57899999999999999988753
No 22
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=91.19 E-value=0.4 Score=48.87 Aligned_cols=67 Identities=12% Similarity=0.305 Sum_probs=49.8
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++||++|.+|+.........+. ..+.++|.|+.++...++ ..++.|.||+.++|+.|.+.+.
T Consensus 268 ~~~~l~~aDlvl~lG~~~~~~~~~~~~----~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 268 GDRLLQLADLVICIGYSPVEYEPAMWN----SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHHCSEEEEESCCGGGSCGGGTC----CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcCCccccC----CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 445678899999999953322222221 236799999999877664 5799999999999999988774
No 23
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=90.85 E-value=0.4 Score=48.63 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=50.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+.+....+ ...+.++|.|+..+...++ ..++.|.+|+..+|+.|.+.+.
T Consensus 258 ~~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 258 SGFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 345667899999999998753221 1246789999998877654 5789999999999999987764
No 24
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=90.75 E-value=0.37 Score=48.99 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
++++|++|.+|+.+.-.....+-.. ..++.++|.|+.++...++ ..++.|.||+.++|+.|.+.+.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 7899999999998865443322111 1126799999999877664 6789999999999999998875
No 25
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.43 E-value=0.46 Score=48.36 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=47.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHH
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 260 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l 260 (356)
.+.+.+++|||+|++|+.+.-.+...+. ......++|.|+.++...++ ..++.|.+|+..+++.|
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l 337 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQ--ASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH 337 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHH--HHCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHH--hcCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence 4556788999999999998643333332 11233489999998877664 57899999999999875
No 26
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.69 E-value=0.43 Score=49.15 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++|++|++|+.+.-.....+ .....+.++|.|+.++...++ ..++.|.||+..+++.|.+.+.
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 357 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSV--EKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ 357 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSH--HHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcc--cccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 455677899999999998763222222 112246789999998866554 5688999999999999988764
No 27
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=88.85 E-value=0.84 Score=46.90 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.++ +||+|.+|+.+.......+ .....+.++|.|+.++...++ ..++.|.+|+.++|+.|.+.+.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLW--LKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHH--HHHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhcC-CCEEEEECCcCccHHHHHH--HhhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 4455 8999999998753322222 111226789999999887764 5789999999999999988774
No 28
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=88.24 E-value=1 Score=46.15 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=51.4
Q ss_pred HHHHHhccCCEEEEEccCCCcccc-ccccHHHhcCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPA-CNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 266 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~-~~lp~~a~~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~~ 266 (356)
.+.+.+++||++|++|+.+..... ... . .+.++|.|+.++...++ ..++.|.||+..+++.|.+.+..
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~----~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~~ 332 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF----R-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDA 332 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT----T-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC----C-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhcc
Confidence 455678899999999998754331 001 1 35789999998877654 56899999999999999988753
No 29
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=87.32 E-value=0.67 Score=46.64 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=51.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCC-CccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~-~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++|++|++|+.+.......+.. ....+.++|.|+..+...++ ..++.|.+|+.++++.|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQ-YLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSC-SSCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCC-cCCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 45567889999999999876544433211 01236789999998754321 6789999999999999988774
No 30
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=87.30 E-value=1.2 Score=46.71 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=49.6
Q ss_pred HHHHhccCCEEEEEccCCCcccc---ccccHHHh----cCCCeEEEEcCcCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPA---CNLPLKSL----RGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~---~~lp~~a~----~~g~~lV~IN~~~t~~d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.+++|||+|.+|+.+.-.-. ..+...++ ...+.+|.|+..+...++ ..++.|.||+..+|+.|.+.|.
T Consensus 350 ~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 350 ANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 34567899999999998753211 12221222 233448888888776654 5789999999999999988774
No 31
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=84.71 E-value=1.1 Score=42.71 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=47.0
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHh
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L 264 (356)
.|+|.|.+|-|..+.-.+.+ +.-..+|-||.++. |.-+.+|+.|-||.-+++++|.++|
T Consensus 259 P~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 259 SCKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp TCSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred ccceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 45999999999887554444 22234778999875 4568999999999999999999887
No 32
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=79.79 E-value=3.1 Score=39.47 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=48.2
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
..+|.|.+|-|..+.-.+.+ +.-..+|-||.++. |.-+.+|+.|-||.-+++++|.++|.
T Consensus 253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 45799999999988766655 12234778999875 45689999999999999999999884
No 33
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=79.35 E-value=3.1 Score=37.00 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=58.2
Q ss_pred cceEecCCCCChh---chHHHHHHhccCCEEEEEccCCCccccc---------cccHHHhcCCCeEEEEcCcCCC----C
Q 018442 178 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPAC---------NLPLKSLRGGGKIVIVNLQQTP----K 241 (356)
Q Consensus 178 p~Vv~fgE~lp~~---~~~~a~~~~~~aDLlLvlGTSl~V~P~~---------~lp~~a~~~g~~lV~IN~~~t~----~ 241 (356)
.||++-+-.+|-+ .|+..-..+.++|+.||+|..-.|.|++ .+|.....+-..+|.++..-.. .
T Consensus 94 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv 173 (207)
T 1djl_A 94 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAV 173 (207)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCC
T ss_pred CcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCC
Confidence 3455444445543 3666667899999999999988887654 3443222223345555555322 1
Q ss_pred C-----CCccEEEEccHHHHHHHHHHHhc
Q 018442 242 D-----KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 242 d-----~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+ ......+.||+.+.+.+|.+.|.
T Consensus 174 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 202 (207)
T 1djl_A 174 DNPIFYKPNTAMLLGDAKKTCDALQAKVR 202 (207)
T ss_dssp CCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred cCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 1 35678899999999999998885
No 34
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=79.23 E-value=5.1 Score=34.78 Aligned_cols=73 Identities=12% Similarity=0.357 Sum_probs=50.5
Q ss_pred hHHHHHHhccCCEEEEEccCCCcccccc---------ccHHHhcCCCeEEEEcCcCCC----C-----CCCccEEEEccH
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP----K-----DKKASLVVHAPV 253 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~~---------lp~~a~~~g~~lV~IN~~~t~----~-----d~~~dl~I~g~~ 253 (356)
|+..-..+.++|+.||+|..-.|.|+++ +|.....+-..+|.++..-.. . -......+.||+
T Consensus 89 MdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 168 (180)
T 1pno_A 89 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDA 168 (180)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 6666678999999999999888877654 342222222345555554322 1 145678899999
Q ss_pred HHHHHHHHHHh
Q 018442 254 DKVIAGVMRHL 264 (356)
Q Consensus 254 d~vl~~l~~~L 264 (356)
.+.+.+|.+.|
T Consensus 169 K~~~~~l~~~l 179 (180)
T 1pno_A 169 KKMTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 35
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=78.51 E-value=2.3 Score=43.10 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.+++|||+|++|+.+.-.+...+.. ...+.++|.||.++...++. ....-++..+++.|.+.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 338 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSY--SYKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTIA 338 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCC--CCCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccc--CCCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhhc
Confidence 44567889999999999886444433311 11357899999988765542 2333457888888877663
No 36
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=77.50 E-value=5.6 Score=35.23 Aligned_cols=86 Identities=16% Similarity=0.363 Sum_probs=56.1
Q ss_pred ceEecCCCCChh---chHHHHHHhccCCEEEEEccCCCcccccc---------ccHHHhcCCCeEEEEcCcCCC----CC
Q 018442 179 TVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP----KD 242 (356)
Q Consensus 179 ~Vv~fgE~lp~~---~~~~a~~~~~~aDLlLvlGTSl~V~P~~~---------lp~~a~~~g~~lV~IN~~~t~----~d 242 (356)
||++-+-.+|-+ .|+..-..+.++|+.||+|..-.|.|+++ +|.....+-..+|.+...-.. .+
T Consensus 96 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~ 175 (203)
T 2fsv_C 96 NVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVE 175 (203)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCC
T ss_pred cEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCc
Confidence 444444444433 36666678999999999999888877654 342222222345555555322 11
Q ss_pred -----CCccEEEEccHHHHHHHHHHHh
Q 018442 243 -----KKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 243 -----~~~dl~I~g~~d~vl~~l~~~L 264 (356)
......+.||+.+.+.+|.+.|
T Consensus 176 NpLF~~~nt~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 176 NELFFRNNTMMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp CGGGGSTTEEEEESCHHHHHHHHHHHC
T ss_pred CcceecCCceEEeccHHHHHHHHHHHh
Confidence 3567889999999999998876
No 37
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=76.85 E-value=3.7 Score=38.82 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=46.7
Q ss_pred cCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCC-CCCCCccEEEEccHHHHHHHHHHHh
Q 018442 201 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHL 264 (356)
Q Consensus 201 ~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t-~~d~~~dl~I~g~~d~vl~~l~~~L 264 (356)
..+|.|.+|-|..+.-.+.+ +.-..+|-||.++. |.-+.+|+.|-||.-+++++|.++|
T Consensus 248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 45799999999988666555 12234778999875 4568999999999999999998764
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=76.78 E-value=2.7 Score=42.66 Aligned_cols=67 Identities=9% Similarity=0.189 Sum_probs=45.9
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.++++|++|++|+.+.-.....+. ....+.++|.|+.++...++ .....-.+.++++.|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWS--AWPKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTT--SCCCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccc--ccCCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 445688999999999987654443331 11246789999998876654 34444457888888887764
No 39
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=76.67 E-value=6.3 Score=34.33 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=51.6
Q ss_pred hHHHHHHhccCCEEEEEccCCCccccc---------cccHHHhcCCCeEEEEcCcCCC----CC-----CCccEEEEccH
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPAC---------NLPLKSLRGGGKIVIVNLQQTP----KD-----KKASLVVHAPV 253 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~---------~lp~~a~~~g~~lV~IN~~~t~----~d-----~~~dl~I~g~~ 253 (356)
|+..-..+.++|+.||+|..-.|.|++ .+|.....+-..+|.++..-.. .+ ......+.||+
T Consensus 88 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 167 (184)
T 1d4o_A 88 MDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDA 167 (184)
T ss_dssp HHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 666667899999999999988887654 3442222222345555555322 11 35678899999
Q ss_pred HHHHHHHHHHhc
Q 018442 254 DKVIAGVMRHLN 265 (356)
Q Consensus 254 d~vl~~l~~~L~ 265 (356)
.+.+.+|.+.|.
T Consensus 168 K~~~~~l~~~l~ 179 (184)
T 1d4o_A 168 KKTCDALQAKVR 179 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998885
No 40
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=76.25 E-value=2.9 Score=42.13 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++|++|++|+.+...+...+.. ...+.++|.|+.++...++ .....-++.++++.|.+ +.
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTH--QLTPAQTIEVQPHAARVGD--VWFTGIPMNQAIETLVE-LC 335 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCC--CCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--CCCCCeEEEEeCChheeCC--cccCCccHHHHHHHHHh-Cc
Confidence 45567889999999999886555444321 1235678999998876554 22334466888888877 64
No 41
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=75.89 E-value=2.7 Score=42.67 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=45.6
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+.+.++++|++|++|+.+.-.....+. ....+.++|.|+.++...+. .....-++.++|+.|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWT--DIPDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTT--CCCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccc--cCCCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 345678899999999987544333331 11245789999998876553 34444568889998888764
No 42
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=75.11 E-value=0.83 Score=39.03 Aligned_cols=29 Identities=31% Similarity=0.780 Sum_probs=19.9
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
+..+|..|++.|... .....| |.||+.++
T Consensus 131 ~~y~C~~Cg~~~~~~---------~~~~~C--p~CG~~~~ 159 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL---------PPGGVC--PDCGSKVK 159 (165)
T ss_dssp CCEEESSSCCEESSC---------CGGGBC--TTTCCBEE
T ss_pred EEEECCCCCCcccCC---------CCCCcC--CCCCCcce
Confidence 357999999987432 112379 89998753
No 43
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=73.69 E-value=3.8 Score=43.13 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=40.9
Q ss_pred HhccCCEEEEEccCCCc-cc--cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEc
Q 018442 198 NCRMADVVLCLGTSLQI-TP--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 251 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P--~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g 251 (356)
.+.++|++|++|+-... .| .......++++|+++|.|++..+.....+|..|.=
T Consensus 196 d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i 252 (765)
T 2vpz_A 196 DWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI 252 (765)
T ss_dssp CGGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred ccccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence 46799999999986443 23 22333556778999999999999988888988753
No 44
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=73.29 E-value=2 Score=44.95 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=39.8
Q ss_pred HhccCCEEEEEccCCCc-cc--cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQI-TP--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P--~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.++|++|++|+.... .| .......++++|+++|.|++..+.....+|+.|.
T Consensus 157 d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 157 SFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp CTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred CcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 47799999999986543 23 2223345667899999999999887777888874
No 45
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=68.94 E-value=2.1 Score=43.46 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=43.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++|++|++|+.+.-.....+.. ...+.++|.|+.++...++ .....-++..+++.|.+.+.
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 355 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFTH--HLDENKMISLNIDEGIIFN--KVVEDFDFRAVVSSLSELKG 355 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTCC--CCCGGGEEEECSSCEEETT--EEECSSCHHHHHHTGGGCCS
T ss_pred HHHHHHHhCCEEEEECCCccccccccccc--CCCCCeEEEEeCCHHHhCC--eeecCCCHHHHHHHHHHhcc
Confidence 44567889999999999885544433311 1134678999998766554 23334467777777765543
No 46
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=67.39 E-value=3 Score=43.55 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=39.5
Q ss_pred HhccCCEEEEEccCCCc-ccc-ccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEc
Q 018442 198 NCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 251 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g 251 (356)
.+.++|++|++|+.... .|. ......++++|+++|.|++..+.....+|+.|.=
T Consensus 163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~i 218 (715)
T 2iv2_X 163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL 218 (715)
T ss_dssp GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECC
T ss_pred HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEecc
Confidence 46889999999986432 221 2222456778999999999998877778877653
No 47
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=66.90 E-value=4.9 Score=35.01 Aligned_cols=71 Identities=13% Similarity=0.308 Sum_probs=46.8
Q ss_pred HHHHHhccCCEEEEEccCCCcccccc---------ccHHHhcCCCeEEEEcCcCCC---------CCCCccEEEEccHHH
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP---------KDKKASLVVHAPVDK 255 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~---------lp~~a~~~g~~lV~IN~~~t~---------~d~~~dl~I~g~~d~ 255 (356)
..-..+.++|++||+|..-.|.|+++ +|.....+-..+|.++..-.. +-+.....+.||+.+
T Consensus 98 eIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~ 177 (186)
T 2bru_C 98 EINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKA 177 (186)
T ss_dssp CCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHH
T ss_pred HHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHH
Confidence 34467889999999999888877654 332222222345555544221 114567889999999
Q ss_pred HHHHHHHHh
Q 018442 256 VIAGVMRHL 264 (356)
Q Consensus 256 vl~~l~~~L 264 (356)
.+.+|.+.|
T Consensus 178 ~~~~l~~~l 186 (186)
T 2bru_C 178 SVDAILKAL 186 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999988764
No 48
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=65.19 E-value=5.8 Score=30.35 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=36.9
Q ss_pred ccccccCCCCCccchhhHHHhhcc------------------cCCCCcCCCCCCCCccccceEecCCCCChhchHHHHHH
Q 018442 137 SFREICPSCGVEYMRDFEIETIGM------------------KKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEEN 198 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~------------------~~~~p~C~~p~Cgg~lrp~Vv~fgE~lp~~~~~~a~~~ 198 (356)
-+...|+-||....+...+++|.. ..-.-+| |.||.. ++|-.+|.+.-++..+.
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkC--P~CgEE------FyG~~Lp~~EaeKVFEL 77 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKC--PVCGEE------FYGKTLPRREAEKVFEL 77 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEEC--TTTCCE------EETTSSCTTTHHHHHHH
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcC--CCccHH------HhcccCChHHHHHHHHH
Confidence 355789999998766554444311 1224689 799975 68889998777776665
Q ss_pred hc
Q 018442 199 CR 200 (356)
Q Consensus 199 ~~ 200 (356)
+.
T Consensus 78 LN 79 (95)
T 2k5c_A 78 LN 79 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 49
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=64.90 E-value=5.4 Score=43.38 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=40.5
Q ss_pred HhccCCEEEEEccCCCc-c-ccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQI-T-PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~-P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.+||++|++|+.... . +.......++++|+++|.|++..+.....+|+.|.
T Consensus 243 D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~ 297 (976)
T 2ivf_A 243 NLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVP 297 (976)
T ss_dssp GGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred hHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEec
Confidence 47789999999986432 2 23334455677899999999999988888888874
No 50
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=63.22 E-value=4.4 Score=44.10 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=40.1
Q ss_pred HHhccCCEEEEEccCCCc-cc-cccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P-~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
..+.+||++|++|+.... .| .......++++|+++|.|++..|.....+|+.|.
T Consensus 180 ~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~ 235 (977)
T 1h0h_A 180 IDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAP 235 (977)
T ss_dssp GGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HHHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeec
Confidence 357899999999986432 23 1222345667899999999999998888887754
No 51
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=61.49 E-value=5.7 Score=41.41 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.8
Q ss_pred HhccCCEEEEEccCCCc-ccc-ccccHHHhcC--CCeEEEEcCcCCCCCCCccEEEEc
Q 018442 198 NCRMADVVLCLGTSLQI-TPA-CNLPLKSLRG--GGKIVIVNLQQTPKDKKASLVVHA 251 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P~-~~lp~~a~~~--g~~lV~IN~~~t~~d~~~dl~I~g 251 (356)
.+.++|++|++|+.... .|. ......++++ |+++|.|++..+.....+|+.|.=
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~i 220 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAF 220 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECC
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeec
Confidence 47799999999986432 221 1122345555 999999999999888888887754
No 52
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=60.65 E-value=9.4 Score=38.63 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=40.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 018442 194 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 194 ~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.+.+.++++|++|++|+.+.......+... ....++|.|+.++....+. ....-.+..+++.|.+.+.
T Consensus 282 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 349 (565)
T 2nxw_A 282 EITRLVEESDGLFLLGAILSDTNFAVSQRK--IDLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERLP 349 (565)
T ss_dssp HHHHHHHTCSEEEEESCCBCSSTTSBCTTT--SCGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTSC
T ss_pred HHHHHHHhCCEEEEECCCcccccccccccc--CCCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhcc
Confidence 345668899999999998765444333111 1124688888776544432 2333345677777776553
No 53
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.79 E-value=5.2 Score=27.18 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=20.3
Q ss_pred ccccccCCCCCccchhhHHHhhcccCC--CCcCCCCCCCCc
Q 018442 137 SFREICPSCGVEYMRDFEIETIGMKKT--PRRCSDVKCGSR 175 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~~~~--~p~C~~p~Cgg~ 175 (356)
+...+|..||..|..+.--. ..+... .-+| |.||..
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~-t~f~~lP~dw~C--P~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDN-VPFDQLPDDWCC--PVCGVS 39 (46)
T ss_dssp CCCEEETTTCCEECGGGGTT-CCGGGSCTTCBC--TTTCCB
T ss_pred CCEEECCCCCeEEeCCcCCC-cchhhCCCCCcC--cCCCCc
Confidence 45679999998885331100 111121 2279 789864
No 54
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=58.68 E-value=3.5 Score=43.47 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=38.3
Q ss_pred HhccCCEEEEEccCCCc-ccc---------ccccHHHhcCCCeEEEEcCcCCCCCCCc-cEEEE
Q 018442 198 NCRMADVVLCLGTSLQI-TPA---------CNLPLKSLRGGGKIVIVNLQQTPKDKKA-SLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P~---------~~lp~~a~~~g~~lV~IN~~~t~~d~~~-dl~I~ 250 (356)
.+.+||++|++|+-... .|. ......++++|+++|.|++..+.....+ |+.|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 57899999999986533 332 1223456678999999999998876655 77765
No 55
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=58.37 E-value=12 Score=31.32 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=37.2
Q ss_pred eeeE--EEeeccCCCCCCCCceeEEEeecCCCCchhhhccccCCceeeeeeccc
Q 018442 294 VKWA--LRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQIT 345 (356)
Q Consensus 294 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 345 (356)
-.|+ +-+.+.+|...+..|+++|....-+-..-.-.++.++||.+.+++-..
T Consensus 33 h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWGe 86 (140)
T 3qrl_A 33 RQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGG 86 (140)
T ss_dssp EEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESSC
T ss_pred cEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEeee
Confidence 5899 778888877666779999988533222224568899999998776543
No 56
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=57.94 E-value=8.6 Score=32.65 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCcEEEEeCCCcC
Q 018442 34 IAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 34 i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
+++++++|++|++-|++.|.|+.
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHcCCCCEEEECCCcc
Confidence 78999999999999999999875
No 57
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=54.35 E-value=5.3 Score=43.68 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=39.4
Q ss_pred HhccCCEEEEEccCCCc-cc-cccccHHHh-cCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQI-TP-ACNLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P-~~~lp~~a~-~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.+||++|++|+.... .| .......++ ++|+++|.|++..+.....+|+.|.
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~ 274 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAP 274 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEEC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeec
Confidence 57899999999986432 23 222334566 7899999999999887777887764
No 58
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=53.95 E-value=9.4 Score=32.39 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=35.1
Q ss_pred HhccCCEEEEEccCC--CccccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEEc-cHHHHHHHHHHHhc
Q 018442 198 NCRMADVVLCLGTSL--QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA-PVDKVIAGVMRHLN 265 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl--~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~g-~~d~vl~~l~~~L~ 265 (356)
.+++|||+|++|+.+ .-.....+. .... .++|.|+....+. ....+.. ...++++.|.+.+.
T Consensus 104 ~~~~aDlvl~iG~~~~~~~~~t~~~~--~~~~-~~iI~i~~~~~~~---~~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 104 GNGNYDMIITIGFKKFYINQVLSAAK--NFSN-LKTIAIERGYIQN---ATMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp SSCCCSEEEEESCCHHHHHHHHHHHH--HHCC-CCEEECSSSCCTT---SSEECCCCCHHHHHHHHHHHHH
T ss_pred HhhcCCEEEEECCccCcccccccccc--ccCC-CeEEEECCCcccc---hhhhhccCCHHHHHHHHHHHHh
Confidence 478899999999987 432222221 1123 6777666543221 1222222 46788888876653
No 59
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=53.20 E-value=6.8 Score=26.78 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=18.2
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
....|..||+++..+.. . .-+ .-+| |.||-.
T Consensus 2 ~iY~C~rCg~~fs~~el-~---~lP-~IrC--pyCGyr 32 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQL-K---VLP-GVRC--PYCGYK 32 (48)
T ss_dssp ---CCCCTTTTCCCCCS-C---CCS-SSCC--TTTCCS
T ss_pred cEEEeeccCCCccHHHH-h---hCC-Cccc--CccCcE
Confidence 34689999998755421 1 112 3489 799954
No 60
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.47 E-value=6.6 Score=31.62 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=19.6
Q ss_pred ccccccCCCCCccchhhHHHhhcccCCCC-cCCCCCCCCc
Q 018442 137 SFREICPSCGVEYMRDFEIETIGMKKTPR-RCSDVKCGSR 175 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~~~~~p-~C~~p~Cgg~ 175 (356)
-..++|..||+.|..+ .... .| |.||+.
T Consensus 71 p~~~~C~~CG~~~e~~---------~~~~~~C--P~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN---------ALDYGVC--EKCHSK 99 (119)
T ss_dssp CCEEECSSSSCEECSC---------CSTTCCC--SSSSSC
T ss_pred cceEEcCCCCCEEeCC---------CCCCCcC--ccccCC
Confidence 3457999999877432 2235 69 899987
No 61
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=49.74 E-value=11 Score=27.86 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=12.6
Q ss_pred CccccccCCCCCccch
Q 018442 136 NSFREICPSCGVEYMR 151 (356)
Q Consensus 136 ~~~~~~C~~C~~~y~~ 151 (356)
.+..++|..|+..|..
T Consensus 4 ~m~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 4 DEGKYECEACGYIYEP 19 (70)
T ss_dssp CSSCEEETTTCCEECT
T ss_pred CCceEEeCCCCEEEcC
Confidence 4567899999988754
No 62
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=49.69 E-value=23 Score=30.71 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=44.4
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCc---cEEEEccH
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKA---SLVVHAPV 253 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~---dl~I~g~~ 253 (356)
...+.+-|++|++-.|..+.-.......++++|.++|.| +....+..+.+ |+.|.-..
T Consensus 109 ~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~ 170 (201)
T 3trj_A 109 AALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPS 170 (201)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESC
T ss_pred HhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCC
Confidence 345788999999999999888888878888999998876 44555666667 77765443
No 63
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=49.36 E-value=5.4 Score=42.74 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=37.3
Q ss_pred HHhccCCEEEEEccCCCccccc-------cccHHHhcCCCeEEEEcCcCCCCCCC-ccEEE
Q 018442 197 ENCRMADVVLCLGTSLQITPAC-------NLPLKSLRGGGKIVIVNLQQTPKDKK-ASLVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~-------~lp~~a~~~g~~lV~IN~~~t~~d~~-~dl~I 249 (356)
+.+.+||++|++|+.....|.. .+...++++|+++|.|++..+..... +|+.|
T Consensus 204 ~~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l 264 (875)
T 1ti6_A 204 DGLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWF 264 (875)
T ss_dssp HHHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEE
T ss_pred hHHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEe
Confidence 3478999999999976334542 12122677899999999999876554 46654
No 64
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=49.12 E-value=6.2 Score=41.93 Aligned_cols=67 Identities=4% Similarity=0.010 Sum_probs=43.4
Q ss_pred HhccCCEEEEEccCCCc-cc---------cccccHHHhc---CCC-eEEEEcCcCCCCCCCc-cEEEE---ccHHHHHHH
Q 018442 198 NCRMADVVLCLGTSLQI-TP---------ACNLPLKSLR---GGG-KIVIVNLQQTPKDKKA-SLVVH---APVDKVIAG 259 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P---------~~~lp~~a~~---~g~-~lV~IN~~~t~~d~~~-dl~I~---g~~d~vl~~ 259 (356)
.+.++|++|++|+-... .| .......+++ +|+ ++|.|++..+.....+ |+.|. |.-..++-.
T Consensus 207 ~~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~irPGtD~al~~a 286 (829)
T 1tmo_A 207 ILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLA 286 (829)
T ss_dssp HHHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEECCCTTCHHHHHHH
T ss_pred hHhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEecccCCCHHHHHHH
Confidence 36899999999986532 22 2222344566 788 9999999998877777 77762 333334444
Q ss_pred HHHHh
Q 018442 260 VMRHL 264 (356)
Q Consensus 260 l~~~L 264 (356)
|++.|
T Consensus 287 ~~~~i 291 (829)
T 1tmo_A 287 IAHEM 291 (829)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 65
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=48.60 E-value=6.2 Score=32.88 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.1
Q ss_pred eccCCccccccCCCCCccchh
Q 018442 132 ELHGNSFREICPSCGVEYMRD 152 (356)
Q Consensus 132 elHG~~~~~~C~~C~~~y~~d 152 (356)
++.-.-..++|..||..|..+
T Consensus 63 ~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 63 EFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEECCEEEETTTCCEEEGG
T ss_pred EEEecCCcEECCCCCCEEecc
Confidence 333344567999999887543
No 66
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=47.36 E-value=6.5 Score=44.13 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=39.1
Q ss_pred HhccCCEEEEEccCCCc--cccccccHHHhcCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V--~P~~~lp~~a~~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.+||++|++|+.... ++.......++++|+++|.|++..+.....+|+.|.
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ 297 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLA 297 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEEC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEe
Confidence 46789999999986422 233344455677899999999999887677777654
No 67
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=47.34 E-value=34 Score=29.69 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=39.3
Q ss_pred CcceeeEEEeeccCCCCCCCCceeEEEeecCCCCchhhhccccCCceeeeeeccccc
Q 018442 291 DKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITSA 347 (356)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 347 (356)
.-.-.|++-+.+.++.+.. .|+++|....-+.-...-.+++++||.+.++.-..=.
T Consensus 30 ~~TH~WtVyVr~~~~edis-~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~GWGeF~ 85 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDIS-YFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFD 85 (175)
T ss_dssp TCCEEEEEEEECGGGCCCT-TTEEEEEEECCTTSSSCEEEECSSSEEEEEEESSCCE
T ss_pred CCcEEEEEEEECCCCCChh-heEEEEEEEcCCCCCCCcEEEeCCCCEEEEeEEeeEE
Confidence 3457899988888775444 6999998864443323456889999999877654433
No 68
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=47.06 E-value=9.8 Score=40.48 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=37.7
Q ss_pred HhccCCEEEEEccCCCc-cccc-cccHHHh--cCCCeEEEEcCcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQI-TPAC-NLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V-~P~~-~lp~~a~--~~g~~lV~IN~~~t~~d~~~dl~I~ 250 (356)
.+.+||++|++|+.... .|.. .....++ ++|+++|.|++..|.....+|+.|.
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ 231 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGII 231 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEE
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEec
Confidence 57899999999986432 3321 1112232 4799999999999998888887754
No 69
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=46.68 E-value=6 Score=31.24 Aligned_cols=14 Identities=57% Similarity=0.880 Sum_probs=12.2
Q ss_pred CcEEEEeCCCcCcc
Q 018442 45 KHLVAFTGAGISTS 58 (356)
Q Consensus 45 k~Ivv~TGAGISt~ 58 (356)
++|++.+|||+||+
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999986
No 70
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.84 E-value=18 Score=25.31 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=11.1
Q ss_pred cccccCCCCCccch
Q 018442 138 FREICPSCGVEYMR 151 (356)
Q Consensus 138 ~~~~C~~C~~~y~~ 151 (356)
...+|..|+..|..
T Consensus 2 ~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 2 KKYTCTVCGYIYDP 15 (54)
T ss_dssp CCEEETTTCCEECT
T ss_pred CceECCCCCeEECC
Confidence 45799999988854
No 71
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=45.46 E-value=15 Score=30.86 Aligned_cols=57 Identities=14% Similarity=-0.035 Sum_probs=42.5
Q ss_pred HHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEcc
Q 018442 196 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 252 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g~ 252 (356)
...+.+-|++|++-.|..+.-..+....++++|.++|.| |....+..+.+|+.|.-.
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 345788999999999998877777777888899998766 334455556677766543
No 72
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.92 E-value=12 Score=27.62 Aligned_cols=28 Identities=29% Similarity=0.782 Sum_probs=18.7
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
....|..||.++... .....+| |.||..
T Consensus 27 v~Y~C~~CG~~~e~~--------~~d~irC--p~CG~R 54 (70)
T 1twf_L 27 LKYICAECSSKLSLS--------RTDAVRC--KDCGHR 54 (70)
T ss_dssp CCEECSSSCCEECCC--------TTSTTCC--SSSCCC
T ss_pred EEEECCCCCCcceeC--------CCCCccC--CCCCce
Confidence 446899999875332 1234589 799983
No 73
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.58 E-value=15 Score=29.31 Aligned_cols=28 Identities=32% Similarity=0.744 Sum_probs=18.1
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...+|.+||..| .+ .-....+| |.|++.
T Consensus 66 ~p~~C~~CG~~F-~~-------~~~kPsrC--P~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVF-KA-------EINIPSRC--PKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBC-CC-------CSSCCSSC--SSSCCC
T ss_pred ECcChhhCcCee-cc-------cCCCCCCC--cCCCCC
Confidence 346999999877 11 11224688 789864
No 74
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=42.06 E-value=21 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=23.9
Q ss_pred ccCCccccccCCCCCccchhhHHH---hhcccCCCCcCCCCCCC
Q 018442 133 LHGNSFREICPSCGVEYMRDFEIE---TIGMKKTPRRCSDVKCG 173 (356)
Q Consensus 133 lHG~~~~~~C~~C~~~y~~d~~~~---~~~~~~~~p~C~~p~Cg 173 (356)
.|-+-....|..|++.|.+...+. .+........| +.||
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C--~~cg 45 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG--PSSG 45 (45)
T ss_dssp CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCC--CCCC
T ss_pred CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCC--cCCC
Confidence 455556679999999886544332 12223445678 6776
No 75
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.89 E-value=12 Score=32.29 Aligned_cols=26 Identities=35% Similarity=0.815 Sum_probs=18.1
Q ss_pred cccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 138 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 138 ~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
..++|..||..|.. ..+..| |.||.+
T Consensus 137 ~~~~C~~CG~i~~~----------~~p~~C--P~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD----------EAPEYC--PVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES----------CCCSBC--TTTCCB
T ss_pred CeeEeCCCCCeeCC----------CCCCCC--CCCCCC
Confidence 45789999987741 123389 789965
No 76
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=39.00 E-value=13 Score=39.35 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=37.8
Q ss_pred HHHhccCCEEEEEccCCCc-cccccc-cHHH-------------------------hcCCCeEEEEcCcCCCCCCCccEE
Q 018442 196 EENCRMADVVLCLGTSLQI-TPACNL-PLKS-------------------------LRGGGKIVIVNLQQTPKDKKASLV 248 (356)
Q Consensus 196 ~~~~~~aDLlLvlGTSl~V-~P~~~l-p~~a-------------------------~~~g~~lV~IN~~~t~~d~~~dl~ 248 (356)
...+.++|++|++| .... .|.... ...+ +++|.++|.|++..+.....+|..
T Consensus 387 ~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~ 465 (783)
T 3i9v_3 387 LEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIH 465 (783)
T ss_dssp HHHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEE
T ss_pred HHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcce
Confidence 34567899999999 5432 332211 1112 157899999999999988888877
Q ss_pred EEc
Q 018442 249 VHA 251 (356)
Q Consensus 249 I~g 251 (356)
+.-
T Consensus 466 l~i 468 (783)
T 3i9v_3 466 EVH 468 (783)
T ss_dssp EEC
T ss_pred Eec
Confidence 653
No 77
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.40 E-value=22 Score=32.34 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=28.3
Q ss_pred ceeeccCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCccc
Q 018442 129 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 177 (356)
Q Consensus 129 ~v~elHG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~lr 177 (356)
-|+.++|+ .|..|+-..+...... +.....+..| |.||..|.
T Consensus 192 avv~v~~~----~C~GC~~~lppq~~~~-i~~~~~Iv~C--p~CgRIL~ 233 (256)
T 3na7_A 192 SIVTIKKQ----ACGGCFIRLNDKIYTE-VLTSGDMITC--PYCGRILY 233 (256)
T ss_dssp SEEECBTT----BCTTTCCBCCHHHHHH-HHHSSSCEEC--TTTCCEEE
T ss_pred eEEEeeCC----ccCCCCeeeCHHHHHH-HHCCCCEEEC--CCCCeeEE
Confidence 37777764 8999998776554322 3234567799 79997653
No 78
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.82 E-value=18 Score=24.98 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.1
Q ss_pred cccccCCCCCccch
Q 018442 138 FREICPSCGVEYMR 151 (356)
Q Consensus 138 ~~~~C~~C~~~y~~ 151 (356)
..++|..|+..|..
T Consensus 2 ~~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 2 DIYVCTVCGYEYDP 15 (52)
T ss_dssp CCEECSSSCCCCCT
T ss_pred CcEEeCCCCeEEcC
Confidence 46799999988853
No 79
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=37.07 E-value=38 Score=29.23 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEE-cCcCCCCCCCccEEEEccH
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 253 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I-N~~~t~~d~~~dl~I~g~~ 253 (356)
..+.+-|++|++-.|..+.-..+....++++|+++|.| |....+..+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 45788999999999988877777777788889987755 4445667778888776544
No 80
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=36.88 E-value=26 Score=29.56 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=42.0
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCC---ccEEEEcc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKK---ASLVVHAP 252 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~---~dl~I~g~ 252 (356)
..+.+-|++|++-.|..+.-..+....++++|+++|.|-- ...+..+. +|+.|.-.
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~ 164 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECS
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeC
Confidence 5678899999999999888877887888999999877633 33344444 77776654
No 81
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=33.51 E-value=19 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHH-HHHHHhCCcEEEEeCCCcC
Q 018442 34 IAEL-AVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 34 i~~l-a~~i~~ak~Ivv~TGAGIS 56 (356)
++++ +++|++|++-|++.|. +.
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~ 46 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DM 46 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CC
Confidence 6788 9999999999999998 64
No 82
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=33.38 E-value=13 Score=32.43 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=18.9
Q ss_pred ccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 137 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...++|..||..|..+ ..+..| |.||..
T Consensus 153 ~~~~~C~~CG~~~~g~---------~~p~~C--P~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT---------GAPELC--PACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEE---------ECCSBC--TTTCCB
T ss_pred CceEEECCCCCEeeCC---------CCCCCC--CCCcCC
Confidence 4478999999877422 111278 789975
No 83
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.19 E-value=19 Score=27.31 Aligned_cols=15 Identities=33% Similarity=0.498 Sum_probs=12.3
Q ss_pred ccccccCCCCCccch
Q 018442 137 SFREICPSCGVEYMR 151 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~ 151 (356)
+..++|..|+..|..
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 567999999988854
No 84
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=32.15 E-value=23 Score=24.11 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=24.8
Q ss_pred cCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 134 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 134 HG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
|-+-....|..|++.|.....+..+......-.| +.||..
T Consensus 9 H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C--~~C~k~ 48 (62)
T 1vd4_A 9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRC--TFCHTE 48 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBC--SSSCCB
T ss_pred cCCCCCccCCCCCchhccHHHhHhhcCCCCCEEC--CCCCCc
Confidence 4444557999999988665444433322334478 689864
No 85
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=32.02 E-value=41 Score=28.26 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=41.7
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEc-CcCCCCCCCccEEEEcc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAP 252 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN-~~~t~~d~~~dl~I~g~ 252 (356)
..+.+-|++|++-.|..+.-..+....++++|+++|.|- ....+..+.+|+.|.-.
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~ 168 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVP 168 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeC
Confidence 457889999999999888777777778888999877664 34455556677777554
No 86
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=31.59 E-value=13 Score=29.49 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=12.7
Q ss_pred CcEEEEeCCCcCccC
Q 018442 45 KHLVAFTGAGISTSC 59 (356)
Q Consensus 45 k~Ivv~TGAGISt~s 59 (356)
++|++.+|+|+||+.
T Consensus 22 kkIlvvC~sG~gTS~ 36 (113)
T 1tvm_A 22 RKIIVACGGAVATST 36 (113)
T ss_dssp EEEEEESCSCSSHHH
T ss_pred cEEEEECCCCHHHHH
Confidence 479999999999864
No 87
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.32 E-value=19 Score=25.18 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=11.1
Q ss_pred cccccCCCCCccch
Q 018442 138 FREICPSCGVEYMR 151 (356)
Q Consensus 138 ~~~~C~~C~~~y~~ 151 (356)
..++|..||..|..
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 46799999988754
No 88
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=31.23 E-value=96 Score=26.15 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=47.0
Q ss_pred hhchHHHHHHhccCCEEEEE-----ccCCCccccccccHHHhcCCCeEEEEcCcCC----------------------CC
Q 018442 189 PVEMNPAEENCRMADVVLCL-----GTSLQITPACNLPLKSLRGGGKIVIVNLQQT----------------------PK 241 (356)
Q Consensus 189 ~~~~~~a~~~~~~aDLlLvl-----GTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t----------------------~~ 241 (356)
...++.-.+++++||++|.+ |.....--+.++ -.+...|.++|.+....- +.
T Consensus 55 ~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEi-GyA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~ 133 (161)
T 2f62_A 55 LDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEV-GCAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPF 133 (161)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHH-HHHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSS
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHH-HHHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcc
Confidence 34566667899999999999 444333333344 235556788887765421 11
Q ss_pred CC--CccEEEEccHHHHHHHHHHHhc
Q 018442 242 DK--KASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 242 d~--~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
+- ...+.+..+.++++..|.+.|.
T Consensus 134 NLMl~~~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 134 NLMLYDGVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp CGGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred hhhhhhhheeeCCHHHHHHHHHHhhc
Confidence 10 1122277899999999988764
No 89
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.37 E-value=52 Score=27.11 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeec--cCCccccccCCCCCccc
Q 018442 89 RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL--HGNSFREICPSCGVEYM 150 (356)
Q Consensus 89 ~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~el--HG~~~~~~C~~C~~~y~ 150 (356)
..-+...|+.|..|++.|.+..+-..|- ...+++ +..-+.+.|..||+.+.
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~-----------~~~Y~~~~~~~H~HliC~~Cg~v~~ 110 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKS-----------GRRYEIAAKEHHDHIICLHCGKIIE 110 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTT-----------EEEEEESCSCCCEEEEETTTCCEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCC-----------ceEEEecCCCCceEEEECCCCCEEE
Confidence 3455677999999999999987765442 122332 12235689999998653
No 90
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=29.41 E-value=30 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHh----CCcEEEEeCCCcCccCCC
Q 018442 27 PHLLQQKIAELAVMIKK----SKHLVAFTGAGISTSCGI 61 (356)
Q Consensus 27 ~~~l~~~i~~la~~i~~----ak~Ivv~TGAGISt~sGI 61 (356)
...+...++++.++|.+ ...|+|++-||+|-++.+
T Consensus 66 ~~~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~sRS~~v 104 (161)
T 3emu_A 66 GHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAI 104 (161)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHH
Confidence 34566666677776654 568999999999987654
No 91
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.28 E-value=35 Score=28.75 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 28 HLLQQKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 28 ~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
+.+++.++.+++.|.++++|+ +.|.|-|...
T Consensus 25 ~~i~~~~~~~~~~i~~a~~I~-i~G~G~S~~~ 55 (196)
T 2yva_A 25 DAISRAAMTLVQSLLNGNKIL-CCGNGTSAAN 55 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCCEE-EEESTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEE-EEeCchhhHH
Confidence 356688999999999998865 5677877643
No 92
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=28.24 E-value=40 Score=24.32 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=18.6
Q ss_pred ccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCcc
Q 018442 139 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 176 (356)
Q Consensus 139 ~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~l 176 (356)
...|..|+.+...+ ....-+| |.||..+
T Consensus 21 ~Y~C~~Cg~~~~l~--------~~~~iRC--~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQ--------AKEVIRC--RECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCC--------SSSCCCC--SSSCCCC
T ss_pred EEECCCCCCeeecC--------CCCceEC--CCCCcEE
Confidence 46899999876322 1234589 7899763
No 93
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=28.02 E-value=32 Score=29.29 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
+++++++++|.+|+.-|++.|.|-|...
T Consensus 32 ~~i~~~~~~i~~a~~~I~i~G~G~S~~~ 59 (201)
T 3fxa_A 32 EALVKTVEKIAECTGKIVVAGCGTSGVA 59 (201)
T ss_dssp HHHHHHHHHHHHCSSCEEEECCTHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHH
Confidence 6789999999999644577888887543
No 94
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.95 E-value=20 Score=27.59 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=12.2
Q ss_pred ccccccCCCCCccch
Q 018442 137 SFREICPSCGVEYMR 151 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~ 151 (356)
+..++|..||..|..
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 567999999988754
No 95
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=27.64 E-value=80 Score=29.60 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=47.5
Q ss_pred hHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcC----CCCCCCccEEEEcc---HHHHHHHHHHHh
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ----TPKDKKASLVVHAP---VDKVIAGVMRHL 264 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~----t~~d~~~dl~I~g~---~d~vl~~l~~~L 264 (356)
.+++.+.++++|++||+|..-. .-..+|...+.+.|.+.+.|.--. .-+.....+.|.+. .+.+++++.++|
T Consensus 200 Q~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITAGASTP~~li~eVi~~l 278 (297)
T 3dnf_A 200 QESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISAGASTPDWIIEQVKSRI 278 (297)
T ss_dssp HHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHH
Confidence 3455667789999999997432 223567677777777777776432 22345567777764 456777777776
Q ss_pred c
Q 018442 265 N 265 (356)
Q Consensus 265 ~ 265 (356)
.
T Consensus 279 ~ 279 (297)
T 3dnf_A 279 Q 279 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=27.53 E-value=33 Score=28.65 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=40.0
Q ss_pred HHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 195 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 195 a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
....+.+-|++|++-.|..+.-..+....++++|+++|.|-- ...+..+.+|+.|.-
T Consensus 81 ~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 138 (187)
T 3sho_A 81 TLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVA 138 (187)
T ss_dssp HHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEe
Confidence 345677889999999888887777777778888998877644 334444455655543
No 97
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.04 E-value=47 Score=28.06 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=33.7
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCC---ccEEEEc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKK---ASLVVHA 251 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~---~dl~I~g 251 (356)
..+.+-|++|++-.|..+.-..+....++++|+++|.|-- ...+..+. +|+.|.-
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~ 167 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRV 167 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEEC
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEe
Confidence 3466777777777777766666666667777777665532 22333344 6665544
No 98
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=26.49 E-value=33 Score=32.74 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=52.0
Q ss_pred hHHHHHHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcCcCCCCC------CCccEEEEccHHHHHHHHHHHhc
Q 018442 192 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD------KKASLVVHAPVDKVIAGVMRHLN 265 (356)
Q Consensus 192 ~~~a~~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~~~t~~d------~~~dl~I~g~~d~vl~~l~~~L~ 265 (356)
.++..++++++|++|.|.|-|-.--..++.- ...+++.|...|.... ....+.|-.++..+|+.|.+.|.
T Consensus 264 Q~~mr~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 264 QDKMRTTVMDKKMVIMLSTLLHSVATGNLMP----SYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHHHHHHHTTCSEEEEESCHHHHHHHHTTCC----TTSEEEEEESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcccCc----ccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 3345568889999999999887655555521 2345888888775432 36778999999999999998884
No 99
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=26.46 E-value=45 Score=35.27 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=40.7
Q ss_pred HHhccCCEEEEEccCCCc-cccc---cccHH-------Hh--------cCCCeEEEEcCcCCCCCCCcc--------EEE
Q 018442 197 ENCRMADVVLCLGTSLQI-TPAC---NLPLK-------SL--------RGGGKIVIVNLQQTPKDKKAS--------LVV 249 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V-~P~~---~lp~~-------a~--------~~g~~lV~IN~~~t~~d~~~d--------l~I 249 (356)
..+.+||++|++|+-... .|.. ++... ++ ++|+++|.|++..+.....+| +.|
T Consensus 220 ~D~~~ad~il~~G~Np~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~ta~~Ad~~~~~~a~~~l 299 (825)
T 1g8k_A 220 EDAQLADVIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLHL 299 (825)
T ss_dssp HHHHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEE
T ss_pred HHHHhCCEEEEeCCChHHhCcchHhhhHHHhhhhhHHHHhhhhccccccCCCEEEEEeCCCCchhhhhhhccccccceEe
Confidence 357899999999986432 3321 11100 11 258999999999987655554 666
Q ss_pred E---ccHHHHHHHHHHHh
Q 018442 250 H---APVDKVIAGVMRHL 264 (356)
Q Consensus 250 ~---g~~d~vl~~l~~~L 264 (356)
. |.-..++-.|++.|
T Consensus 300 ~irPGtD~al~~al~~~i 317 (825)
T 1g8k_A 300 AIEPGTDTALFNGLFTYV 317 (825)
T ss_dssp CCCTTCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHH
Confidence 3 33334445555443
No 100
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=25.64 E-value=31 Score=29.35 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=40.3
Q ss_pred HHhccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC-cCCCCCCCccEEEEc
Q 018442 197 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 251 (356)
Q Consensus 197 ~~~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~-~~t~~d~~~dl~I~g 251 (356)
..+.+-|++|++-.|..+.-..+....++++|+++|.|-- ...+..+.+|+.|.-
T Consensus 88 ~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 88 GVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 3567889999999998887777877888888999887744 344444556666543
No 101
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.60 E-value=27 Score=27.32 Aligned_cols=12 Identities=50% Similarity=0.778 Sum_probs=6.9
Q ss_pred EEEEeCCCcCcc
Q 018442 47 LVAFTGAGISTS 58 (356)
Q Consensus 47 Ivv~TGAGISt~ 58 (356)
|++.+|+|+||+
T Consensus 7 IlvvC~~G~~TS 18 (109)
T 2l2q_A 7 ILLVCGAGMSTS 18 (109)
T ss_dssp EEEESSSSCSSC
T ss_pred EEEECCChHhHH
Confidence 556666666553
No 102
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.45 E-value=40 Score=28.43 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAG 54 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAG 54 (356)
.+.++.+.+.|.+||+|||.|..+
T Consensus 23 ~EEv~~Ir~~I~nakkIvV~t~N~ 46 (156)
T 3brc_A 23 SEEVEAIRKYIRSARRTVVPNWNA 46 (156)
T ss_dssp HHHHHHHHHHHHHCSCEEECCCCH
T ss_pred HHHHHHHHHHHhcCCeEEEecCCc
Confidence 356778888999999999988654
No 103
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.02 E-value=58 Score=27.06 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCccCC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTSCG 60 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~sG 60 (356)
.+.+++++++|.+|++| ++.|.|-|...+
T Consensus 26 ~~~l~~~~~~i~~a~~I-~i~G~G~S~~~a 54 (187)
T 3sho_A 26 PEAIEAAVEAICRADHV-IVVGMGFSAAVA 54 (187)
T ss_dssp HHHHHHHHHHHHHCSEE-EEECCGGGHHHH
T ss_pred HHHHHHHHHHHHhCCEE-EEEecCchHHHH
Confidence 36788999999999865 677888876543
No 104
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=24.75 E-value=52 Score=32.91 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
.+.+++++++|++|++.||+.|.|.+
T Consensus 188 ~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 188 EEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCch
Confidence 46789999999999999999999974
No 105
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=24.46 E-value=67 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
.+++.++.+++.|.++++|+ +.|.|-|...
T Consensus 30 ~i~~~~~~i~~~i~~a~~I~-i~G~G~S~~~ 59 (199)
T 1x92_A 30 YIEQASLVMVNALLNEGKIL-SCGNGGSAGD 59 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCEE-EECSTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEE-EEcCchhHHH
Confidence 45666677778999998765 5688877543
No 106
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=24.27 E-value=62 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=18.0
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEE
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV 234 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~I 234 (356)
+.+-|++|++-.|..+.-.......++++|+++|.|
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~I 115 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAI 115 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEE
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 334455555555555444444444455555554444
No 107
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=24.26 E-value=44 Score=27.69 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=39.4
Q ss_pred cCCCCCCcccCCChhHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCCCCCccCCCCcc
Q 018442 14 DVGSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVW 71 (356)
Q Consensus 14 ~~g~~~~~e~~~~~~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGIPdFR~~~G~w 71 (356)
.-|.+|-.++- ..+...+|+++++.+.+-+- .+|-|.|.-++-|-||.- |-|
T Consensus 12 ep~~lgr~~~v--s~e~k~kiekaveava~e~~---vsgrgfs~fs~hpvfrec-gky 63 (175)
T 1aoc_A 12 EPGVLGRTQIV--TTEIKDKIEKAVEAVAQESG---VSGRGFSIFSHHPVFREC-GKY 63 (175)
T ss_dssp CTTTSCCSSCC--CHHHHHHHHHHHHHHHHTTC---SSTTSGGGTTTSHHHHHH-CCC
T ss_pred CCcccccceec--cHHHHHHHHHHHHHHHhhcC---ccccceeeecCChhHhhc-cce
Confidence 44777777754 35677889999988876654 489999999999999963 444
No 108
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.93 E-value=25 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.531 Sum_probs=20.5
Q ss_pred cCCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 134 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 134 HG~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
.|.+...+|..||+.+. +.-+.| |.|++.
T Consensus 42 ~g~L~~~rC~~CG~~~f-----------PPr~~C--p~C~s~ 70 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIFV-----------PARSYC--EHCFVK 70 (145)
T ss_dssp TTCCEEEECTTTCCEEE-----------SCCSEE--TTTTEE
T ss_pred CCEEEEEEECCCCcEEe-----------CCCCCC--CCCCCC
Confidence 56777789999998642 123478 789875
No 109
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=23.90 E-value=34 Score=30.18 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred hccCCEEEEEccCCCccccccccHHHhcCCCeEEEEcC
Q 018442 199 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL 236 (356)
Q Consensus 199 ~~~aDLlLvlGTSl~V~P~~~lp~~a~~~g~~lV~IN~ 236 (356)
+.+-|++|++-.|..+.-..+....++++|+++|-|--
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~ 143 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTS 143 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 56778888888887777666776777777888776633
No 110
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.05 E-value=40 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=35.4
Q ss_pred HhccCCEEEEEccCCCccccccccHHHhc--CCCeEEEEc-CcCCCCCCCccEEEE
Q 018442 198 NCRMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVN-LQQTPKDKKASLVVH 250 (356)
Q Consensus 198 ~~~~aDLlLvlGTSl~V~P~~~lp~~a~~--~g~~lV~IN-~~~t~~d~~~dl~I~ 250 (356)
.+.+-|++|++-.|..+.-..+....+++ +|+++|.|- ....+..+.+|+.|.
T Consensus 103 ~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~ 158 (220)
T 3etn_A 103 ILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLS 158 (220)
T ss_dssp GCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEE
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEE
Confidence 56677888888888777666666677777 888877664 333444445555544
No 111
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=22.97 E-value=19 Score=29.26 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.9
Q ss_pred hCCcEEEEeCCCcCccC
Q 018442 43 KSKHLVAFTGAGISTSC 59 (356)
Q Consensus 43 ~ak~Ivv~TGAGISt~s 59 (356)
.-++|++.+|+|++|+.
T Consensus 12 ~~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCCEEEECCSSSSHHHH
T ss_pred cccEEEEECCCcHHHHH
Confidence 34578888888888865
No 112
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.88 E-value=38 Score=23.35 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=10.3
Q ss_pred ccccCCCCCccch
Q 018442 139 REICPSCGVEYMR 151 (356)
Q Consensus 139 ~~~C~~C~~~y~~ 151 (356)
.++|..|+..|..
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 4689999988754
No 113
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=22.71 E-value=76 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCcCccCCC
Q 018442 30 LQQKIAELAVMIKKSKHLVAFTGAGISTSCGI 61 (356)
Q Consensus 30 l~~~i~~la~~i~~ak~Ivv~TGAGISt~sGI 61 (356)
+++.++-+.+.+++...|+|++.||+|-++.+
T Consensus 67 ~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~ 98 (144)
T 3s4e_A 67 FPECFEFIEEAKRKDGVVLVHSNAGVSRAAAI 98 (144)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCchHHHH
Confidence 34444444444556679999999999987654
No 114
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.31 E-value=46 Score=27.72 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIS 56 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGIS 56 (356)
++++++++++|.++++| ++.|.|-|
T Consensus 24 ~~~i~~~~~~i~~a~~I-~i~G~G~S 48 (186)
T 1m3s_A 24 NEEADQLADHILSSHQI-FTAGAGRS 48 (186)
T ss_dssp HHHHHHHHHHHHHCSCE-EEECSHHH
T ss_pred HHHHHHHHHHHHcCCeE-EEEecCHH
No 115
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=22.00 E-value=1e+02 Score=24.49 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 28 HLLQQKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 28 ~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
+.+.+.++-+.+.+++...|+|++.||+|-++
T Consensus 73 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 104 (157)
T 3rgo_A 73 ANLHKGVQFALKYQALGQCVYVHCKAGRSRSA 104 (157)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEESSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCChHH
Confidence 34444555555555566799999999998643
No 116
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=22.00 E-value=52 Score=31.03 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=61.0
Q ss_pred cCCChhHHHHHHHHHHHHHH---hCCcEEEEeCCCcCccCCCC---CccCCC-Cccc-------cccCCC-CC-Cc-ccc
Q 018442 23 IFDPPHLLQQKIAELAVMIK---KSKHLVAFTGAGISTSCGIP---DFRGPK-GVWT-------LQREGK-GV-PE-ASL 85 (356)
Q Consensus 23 ~~~~~~~l~~~i~~la~~i~---~ak~Ivv~TGAGISt~sGIP---dFR~~~-G~w~-------~~~~~~-~~-pe-~~~ 85 (356)
+|.....-.++++++++.|. ++++| +++|.|-|.-+|.. -|..-. |+-. ...... .. ++ .-+
T Consensus 16 ~~t~~~l~~~~i~~~~~~i~~~~~a~~I-~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI 94 (347)
T 3fkj_A 16 YFQGMSVAHENARRIISDILGKQNIERV-WFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVI 94 (347)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSCCCEE-EEEESTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEE
T ss_pred hHHHhhcCHHHHHHHHHHHHhhCCCCEE-EEEEehHHHHHHHHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEE
Confidence 46666677789999999999 66665 67789999877631 111000 1110 000000 00 11 111
Q ss_pred cc-ccCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeecc
Q 018442 86 PF-DRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH 134 (356)
Q Consensus 86 ~f-~~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elH 134 (356)
.+ ++-+-..+-.++....+.|-..-.||.|.++--.+.- +.++.++
T Consensus 95 ~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~a---d~~l~~~ 141 (347)
T 3fkj_A 95 LASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYS---DYIIEYQ 141 (347)
T ss_dssp EEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTC---SEEEECB
T ss_pred EEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhc---CeEEEec
Confidence 11 2334445566677777778777889999998666553 3454444
No 117
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=21.99 E-value=85 Score=31.40 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+.+++++++|++|++.||+.|.|...
T Consensus 194 ~~~~~i~~~~~~l~~a~rpvi~~G~g~~~ 222 (566)
T 2vbi_A 194 SLKAAVDATVALLEKSASPVMLLGSKLRA 222 (566)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEECTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 44577999999999999999999999864
No 118
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.93 E-value=61 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEeCCCcCccCC
Q 018442 28 HLLQQKIAELAVMIKKSKHLVAFTGAGISTSCG 60 (356)
Q Consensus 28 ~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~sG 60 (356)
+.+++.++.+++.|+++++|+ +.|.|-|...+
T Consensus 26 ~~i~~~~~~i~~~l~~~~~I~-i~G~G~S~~~a 57 (188)
T 1tk9_A 26 GQIAKVGELLCECLKKGGKIL-ICGNGGSAADA 57 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEE-EEESTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEE-EEeCcHhHHHH
Confidence 344455555556777788765 56888776543
No 119
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=21.81 E-value=24 Score=27.92 Aligned_cols=14 Identities=0% Similarity=0.114 Sum_probs=9.3
Q ss_pred CcEEEEeCCCcCcc
Q 018442 45 KHLVAFTGAGISTS 58 (356)
Q Consensus 45 k~Ivv~TGAGISt~ 58 (356)
.+|+++++||+||+
T Consensus 7 mkIlL~C~aGmSTs 20 (108)
T 3nbm_A 7 LKVLVLCAGSGTSA 20 (108)
T ss_dssp EEEEEEESSSSHHH
T ss_pred ceEEEECCCCCCHH
Confidence 35777777777664
No 120
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=21.60 E-value=76 Score=27.82 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 28 HLLQQKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 28 ~~l~~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
+.+++.++.+++.|+++++|+ +.|.|-|...
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~-i~G~G~S~~~ 56 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFY-VFGSGHSHMI 56 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEE-EEESGGGHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEE-EEcCcHHHHH
Confidence 344444455555666678776 4588877654
No 121
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=21.58 E-value=50 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=22.6
Q ss_pred ccCCEEEEEccCCC--ccccccccHHHhcCCCeEEEEcCc
Q 018442 200 RMADVVLCLGTSLQ--ITPACNLPLKSLRGGGKIVIVNLQ 237 (356)
Q Consensus 200 ~~aDLlLvlGTSl~--V~P~~~lp~~a~~~g~~lV~IN~~ 237 (356)
++|||+|.+|+.+. .....++ .....++++|-||..
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~--~~fap~akii~Idk~ 144 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAI--KNFAPHIRALAIDRY 144 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHH--HHHCTTCEEEECSSS
T ss_pred CCCCEEEEECCcCCccccccccc--cccCCCCeEEEeCCC
Confidence 89999999999873 2211122 112246788888744
No 122
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=21.29 E-value=32 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.521 Sum_probs=18.7
Q ss_pred CCccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 135 GNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 135 G~~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
|.+-..+|.+|++.+... -+.| |.|++.
T Consensus 43 grL~~~rC~~CG~~~~PP-----------r~~C--p~C~s~ 70 (145)
T 3irb_A 43 NKIIGSKCSKCGRIFVPA-----------RSYC--EHCFVK 70 (145)
T ss_dssp TCCEEEECTTTCCEEESC-----------CSEE--TTTTEE
T ss_pred CeEEEEEeCCCCcEEcCc-----------hhhC--cCCCCC
Confidence 555567999999865221 2468 789864
No 123
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.15 E-value=78 Score=25.41 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeecc--CCccccccCCCCCccc
Q 018442 89 RAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYM 150 (356)
Q Consensus 89 ~a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~elH--G~~~~~~C~~C~~~y~ 150 (356)
..-+...|+.|..|++.|.+..+-..| | ...+++. ..-+.+.|..||+.+.
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--~---------~~~Y~~~~~~~H~HliC~~Cg~v~~ 102 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--G---------HAVFELADSGHHDHMVCVDTGEVIE 102 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--S---------SCEEEESSSCCCEEEEETTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--C---------ceEEEeCCCCcceEEEECCCCCEEE
Confidence 344567799999999999986653322 1 1234431 1234579999998653
No 124
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.91 E-value=44 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=18.6
Q ss_pred ccccccCCCCCccchhhHHHhhcccCCCCcCCCCCCCCc
Q 018442 137 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 175 (356)
Q Consensus 137 ~~~~~C~~C~~~y~~d~~~~~~~~~~~~p~C~~p~Cgg~ 175 (356)
...++|..||..|.. ..+-.| |.||..
T Consensus 169 ~~~~~C~~CG~i~~g----------~~p~~C--P~C~~~ 195 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG----------EDFEKC--PICFRP 195 (202)
T ss_dssp CCEEECSSSCCEEES----------SCCSBC--TTTCCB
T ss_pred CcEEEECCCCCEEcC----------cCCCCC--CCCCCC
Confidence 457899999987742 111388 789865
No 125
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.82 E-value=51 Score=27.01 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeccccchHhhcCCCCCceeec--cCCccccccCCCCCccc
Q 018442 90 AMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL--HGNSFREICPSCGVEYM 150 (356)
Q Consensus 90 a~P~~~H~aL~~L~~~g~l~~viTQNIDgLh~rAG~~~~~v~el--HG~~~~~~C~~C~~~y~ 150 (356)
.-+...|+.|..|++.|.+..+-..| | ...+++ +..-+.+.|..||+.+.
T Consensus 50 is~~TVYR~L~~L~e~Glv~~i~~~~--~---------~~~Y~~~~~~~H~HliC~~Cg~v~~ 101 (145)
T 3eyy_A 50 INISTVYRTLELLEELGLVSHAHLGH--G---------APTYHLADRHHHIHLVCRDCTNVIE 101 (145)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEECGG--G---------CEEEEETTSCCSEEEEESSSSCEEE
T ss_pred CCHhHHHHHHHHHHHCCcEEEEEeCC--C---------ceEEEeCCCCCceEEEECCCCCEEE
Confidence 34567799999999999987765543 2 112232 11234589999998753
No 126
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=20.42 E-value=83 Score=31.49 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
...+.+++++++|++|++.||+.|.|...
T Consensus 194 ~~~~~i~~~~~~l~~a~rpvil~G~g~~~ 222 (568)
T 2wvg_A 194 SLNAAVEETLKFIANRDKVAVLVGSKLRA 222 (568)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECTTTTT
T ss_pred ccHHHHHHHHHHHHhCCCCEEEECccccc
Confidence 34567999999999999999999999864
No 127
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=20.33 E-value=74 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCccCC
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGISTSCG 60 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt~sG 60 (356)
.+.++-+.+.+++.++|+|++-||+|-++-
T Consensus 104 ~~~~~fI~~~~~~g~~VLVHC~~G~sRS~t 133 (182)
T 2j16_A 104 PSLTSIIHAATTKREKILIHAQCGLSRSAT 133 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCSHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 333333444444568999999999998664
No 128
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.18 E-value=78 Score=26.43 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCcCccC
Q 018442 29 LLQQKIAELAVMIKKSKHLVAFTGAGISTSC 59 (356)
Q Consensus 29 ~l~~~i~~la~~i~~ak~Ivv~TGAGISt~s 59 (356)
.+++.++.+++.|+++++|+ +.|.|-|...
T Consensus 33 ~i~~~~~~i~~~i~~~~~I~-i~G~G~S~~~ 62 (198)
T 2xbl_A 33 TVRKVADACIASIAQGGKVL-LAGNGGSAAD 62 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCEE-EECSTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEE-EEeCcHhhHH
Confidence 34444444455557887764 5788877653
No 129
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.09 E-value=54 Score=27.09 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCcCccCC
Q 018442 32 QKIAELAVMIKKSKHLVAFTGAGISTSCG 60 (356)
Q Consensus 32 ~~i~~la~~i~~ak~Ivv~TGAGISt~sG 60 (356)
+.+++++++|.++++|+ +.|.|-|...+
T Consensus 28 ~~i~~~~~~i~~a~~I~-i~G~G~S~~~A 55 (180)
T 1jeo_A 28 NKLDSLIDRIIKAKKIF-IFGVGRSGYIG 55 (180)
T ss_dssp HHHHHHHHHHHHCSSEE-EECCHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEE-EEeecHHHHHH
Confidence 67899999999999765 56888776543
No 130
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=20.04 E-value=73 Score=32.11 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCcCc
Q 018442 31 QQKIAELAVMIKKSKHLVAFTGAGIST 57 (356)
Q Consensus 31 ~~~i~~la~~i~~ak~Ivv~TGAGISt 57 (356)
.+.+++++++|++|++.||+.|.|...
T Consensus 201 ~~~i~~~~~~l~~a~rpvIl~G~g~~~ 227 (590)
T 1ybh_A 201 DSHLEQIVRLISESKKPVLYVGGGCLN 227 (590)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTT
T ss_pred HHHHHHHHHHHHhCCCcEEEECccccc
Confidence 456899999999999999999999753
Done!