BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018443
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPP|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPQ|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
pdb|4DPQ|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
Length = 360
Score = 580 bits (1495), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/330 (82%), Positives = 301/330 (91%)
Query: 27 PPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI 86
P AA++PN+HLPMRS EVKNRT+ +DIKALR+ITAIKTPYLPDGRFDLEAYDDLVN+QI
Sbjct: 31 PFTAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQI 90
Query: 87 VNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 146
NGAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGNTGSNSTREAIHATEQG
Sbjct: 91 QNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQG 150
Query: 147 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 206
FAVGMHAALHINPYYGKTS+EGLI+HF SVL MGPTIIYNVP RTGQDIPPR I ++Q+
Sbjct: 151 FAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKLSQN 210
Query: 207 PNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL 266
PNLAGVKECVGN RVE YT NG+VVWSGNDD+CHD+RW++GATGVISVTSNLVPG+MR+L
Sbjct: 211 PNLAGVKECVGNKRVEEYTENGVVVWSGNDDECHDSRWDYGATGVISVTSNLVPGLMRKL 270
Query: 267 MFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVN 326
MF G+N SLN+KL PL+ WLF EPNPI +NTALAQLGV RPVFRLPYVPLP KR EFV
Sbjct: 271 MFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVK 330
Query: 327 LVNQIGRENFVGEKDVQVLDDDDFILVDRY 356
LV +IGRE+FVGEKDVQ LDDDDFIL+ RY
Sbjct: 331 LVKEIGREHFVGEKDVQALDDDDFILIGRY 360
>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|B Chain B, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|C Chain C, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|D Chain D, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|E Chain E, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|F Chain F, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|G Chain G, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|H Chain H, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
Length = 346
Score = 573 bits (1477), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/331 (84%), Positives = 307/331 (92%)
Query: 26 RPPQAAIIPNYHLPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQ 85
R A+IPN+HLPMRSFEVKNRTS +DIK+LRLITAIKTPYLPDGRFDLEAYD LVNMQ
Sbjct: 16 RGSHMAVIPNFHLPMRSFEVKNRTSVDDIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQ 75
Query: 86 IVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 145
IV+GAEG+IVGGTTGEGQLMSWDEHIMLIGHTVNCFG S+KVIGNTGSNSTREAIHATEQ
Sbjct: 76 IVDGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQ 135
Query: 146 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ 205
GFAVGMHAALHINPYYGKTSLEGL+SHF+SVL MGPT+IYNVPSRTGQDIPP VIHT+AQ
Sbjct: 136 GFAVGMHAALHINPYYGKTSLEGLVSHFESVLPMGPTVIYNVPSRTGQDIPPGVIHTVAQ 195
Query: 206 SPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRE 265
S NLAGV ECVGNDR++ YT N IVVWSGNDDQCHDA+W++GATGVISVTSNL+PG+MR+
Sbjct: 196 SANLAGVXECVGNDRIKQYTDNRIVVWSGNDDQCHDAKWDYGATGVISVTSNLIPGLMRQ 255
Query: 266 LMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFV 325
L+F GKNPSLN K+ PL+ WLF+EPNPI LNTALAQLGVVRPVFRLPYVPLP KR EFV
Sbjct: 256 LLFKGKNPSLNAKIMPLVNWLFEEPNPIGLNTALAQLGVVRPVFRLPYVPLPLAKRVEFV 315
Query: 326 NLVNQIGRENFVGEKDVQVLDDDDFILVDRY 356
N+V +IGRENFVGEKDV+VLDDDDFILV RY
Sbjct: 316 NIVKEIGRENFVGEKDVKVLDDDDFILVGRY 346
>pdb|3PUD|A Chain A, Crystal Structure Of Dhydrodipicolinate Synthase From
Acinetobacter Baumannii At 2.8a Resolution
pdb|3PUD|B Chain B, Crystal Structure Of Dhydrodipicolinate Synthase From
Acinetobacter Baumannii At 2.8a Resolution
pdb|3PUE|A Chain A, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.6a Resolution
pdb|3PUE|B Chain B, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.6a Resolution
pdb|3PUL|A Chain A, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.3a Resolution
pdb|3PUL|B Chain B, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.3a Resolution
pdb|3RK8|A Chain A, Crystal Structure Of The Chloride Inhibited
Dihydrodipicolinate Synthase From Acinetobacter
Baumannii Complexed With Pyruvate At 1.8 A Resolution
pdb|3RK8|B Chain B, Crystal Structure Of The Chloride Inhibited
Dihydrodipicolinate Synthase From Acinetobacter
Baumannii Complexed With Pyruvate At 1.8 A Resolution
pdb|3TAK|A Chain A, Crystal Structure Of The Complex Of Dhdps From
Acinetobacter Baumannii With Pyruvate At 1.4 A
Resolution
pdb|3TAK|B Chain B, Crystal Structure Of The Complex Of Dhdps From
Acinetobacter Baumannii With Pyruvate At 1.4 A
Resolution
pdb|3TCE|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
5-Hydroxylysine At 2.6 A Resolution
pdb|3TCE|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
5-Hydroxylysine At 2.6 A Resolution
pdb|3TDF|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
2-Ketobutanoic Acid At 1.99 A Resolution
pdb|3TDF|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
2-Ketobutanoic Acid At 1.99 A Resolution
pdb|3U8G|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With Oxalic Acid
At 1.80 A Resolution
pdb|3U8G|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With Oxalic Acid
At 1.80 A Resolution
pdb|3UQN|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Oxamic Acid At
1.9 Angstrom Resolution
pdb|3UQN|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Oxamic Acid At
1.9 Angstrom Resolution
pdb|4DXV|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Mg And Cl Ions At
1.80 A Resolution
pdb|4DXV|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Mg And Cl Ions At
1.80 A Resolution
Length = 291
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 147/286 (51%), Gaps = 15/286 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP L DG D ++ + LV I G ++ GTTGE +S +EH +I +
Sbjct: 6 IVAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIR 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ +I TG+NSTREAI T+ +G AAL + PYY K + EGL H+ ++
Sbjct: 66 VANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEA 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTGNGIVVW 232
P I+YNVP RTG D+ +A+ PN+ G+K+ G+ ++ G + V+
Sbjct: 126 VELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALIDALNGK-MAVY 184
Query: 233 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG------KNPSLNTKLFPLIEWL 286
SG+D+ + GA G ISVT+N+ P M E+ + +LN K+ L L
Sbjct: 185 SGDDETAWELML-LGADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIANLHNIL 243
Query: 287 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332
F E NPIP+ AL ++G++ RLP PL ++ R N + G
Sbjct: 244 FCESNPIPVKWALHEMGLIDTGIRLPLTPLAEQYREPLRNALKDAG 289
>pdb|3PB2|A Chain A, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|B Chain B, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|C Chain C, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|D Chain D, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|E Chain E, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|F Chain F, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
Length = 300
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 149/289 (51%), Gaps = 20/289 (6%)
Query: 61 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC 120
TAI TP+ +G DLE+Y+ LV Q+ NG +IV GTTGE ++ DE L+ T+
Sbjct: 13 TAIVTPF-KNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEI 71
Query: 121 FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV---L 177
+ VI G+NST + + +Q +G + L + PYY K + EGL H+ +
Sbjct: 72 VDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT 131
Query: 178 SMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN----DRVEHYTGNG---I 229
+G ++YNVP RTG ++ P +A N+ G+KE + DR T
Sbjct: 132 DLG-IVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDF 190
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGG---KNPSLNTKLFPLI 283
+VWSGNDD+ G GVISV SN+ P M EL F G K+ ++ KL PL+
Sbjct: 191 MVWSGNDDRTF-YLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSAEVHAKLRPLM 249
Query: 284 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332
+ LF E NPIP+ AL +G + RLP VP ++ N++ + G
Sbjct: 250 KALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESG 298
>pdb|3PB0|A Chain A, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|B Chain B, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|C Chain C, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|D Chain D, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
Length = 300
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 148/289 (51%), Gaps = 20/289 (6%)
Query: 61 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC 120
TAI TP+ +G DLE+Y+ LV Q+ NG +IV GTTGE ++ DE L+ T+
Sbjct: 13 TAIVTPF-KNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEI 71
Query: 121 FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV---L 177
+ VI G+NST + + +Q +G + L + PYY K + EGL H+ +
Sbjct: 72 VDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT 131
Query: 178 SMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKE----CVGNDRVEHYTGNG---I 229
+G ++YNVP RTG ++ P +A N+ G+KE DR T
Sbjct: 132 DLG-IVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPAAAQIDRTVSLTKQARSDF 190
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMREL---MFGG---KNPSLNTKLFPLI 283
+VWSGNDD+ G GVISV SN+ P M EL F G K+ ++ KL PL+
Sbjct: 191 MVWSGNDDRTF-YLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLM 249
Query: 284 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332
+ LF E NPIP+ AL +G + RLP VP ++ N++ + G
Sbjct: 250 KALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESG 298
>pdb|1O5K|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O5K|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521)
From Thermotoga Maritima At 1.80 A Resolution
Length = 306
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 148/289 (51%), Gaps = 20/289 (6%)
Query: 61 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC 120
TAI TP+ +G DLE+Y+ LV Q+ NG +IV GTTGE ++ DE L+ T+
Sbjct: 19 TAIVTPF-KNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEI 77
Query: 121 FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV---L 177
+ VI G+NST + + +Q +G + L + PYY K + EGL H+ +
Sbjct: 78 VDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT 137
Query: 178 SMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN----DRVEHYTGNG---I 229
+G ++YNVP RTG ++ P +A N+ G+ E + DR T
Sbjct: 138 DLG-IVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVSLTKQARSDF 196
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM---FGG---KNPSLNTKLFPLI 283
+VWSGNDD+ G GVISV SN+ P M EL F G K+ ++ KL PL+
Sbjct: 197 MVWSGNDDRTF-YLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLM 255
Query: 284 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332
+ LF E NPIP+ AL +G + RLP VP ++ N++ + G
Sbjct: 256 KALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESG 304
>pdb|3QZE|A Chain A, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|B Chain B, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|C Chain C, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|D Chain D, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
Length = 314
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 13/265 (4%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
+ A+ TP+ GR D ++ LV+ + G ++ GTTGE + +EHI +I V+
Sbjct: 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVD 87
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+NSTREA+ TE + G A L + PYY K + EG+ HF +
Sbjct: 88 QVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEA 147
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVP RT D+ P + +++ PN+ G+KE G+ V G +V+S
Sbjct: 148 VAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVYS 207
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVPGMMREL------MFGGKNPSLNTKLFPLIEWLF 287
G+D + G G ISVT+N+ P M +L ++N +L PL + LF
Sbjct: 208 GDDATAVELML-LGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHKALF 266
Query: 288 QEPNPIPLNTALAQLGVVRPVFRLP 312
E NPIP+ AL ++G++ RLP
Sbjct: 267 IESNPIPVKWALHEMGLIPEGIRLP 291
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 146/284 (51%), Gaps = 17/284 (5%)
Query: 62 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121
AI TP+ + D + ++ +N I NG G++ GTTGE +S +EH +I V+
Sbjct: 8 AIITPF-KNKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVV 66
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-- 179
V+VI GSN T EAI + VG A L I PYY K + EGL HF V
Sbjct: 67 NGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESIN 126
Query: 180 GPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN-DRVEHYTGNG-IVVWSGND 236
P ++YNVPSRT ++ P+ + +A+ N++ VKE N +V + I V SGND
Sbjct: 127 LPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSELIHDAKITVLSGND 186
Query: 237 DQCHDARWNHGATGVISVTSNLVPGMMRELMFGG------KNPSLNTKLFPLIEWLFQEP 290
+ G GVISV +N+VP E++ K ++ KLFPL++ +F E
Sbjct: 187 ELTLPI-IALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPLMKAMFIET 245
Query: 291 NPIPLNTALAQLGVVRPV--FRLPYVPLPQEKRAEFVNLVNQIG 332
NPIP+ TAL +G RP RLP + +E + N++ +G
Sbjct: 246 NPIPVKTALNMMG--RPAGELRLPLCEMSEEHKKILENVLKDLG 287
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVXRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+ E GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D +G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALDF-MQYGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALDF-MQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|3NOE|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3NOE|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3PS7|A Chain A, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PS7|B Chain B, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PUO|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3PUO|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3S8H|A Chain A, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
pdb|3S8H|B Chain B, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
Length = 292
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 13/265 (4%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
+ A+ TP+ GR D ++ LV+ + +G ++ GTTGE + +EHI ++ V+
Sbjct: 6 MVALVTPFDAQGRLDWDSLAKLVDFHLQDGTNAIVAVGTTGESATLDVEEHIQVVRRVVD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+NSTREA+ TE + G A L + PYY K + EG+ HF +
Sbjct: 66 QVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEA 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVP RT D+ P + +++ PN+ G+KE G+ V G +V+S
Sbjct: 126 VAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVYS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVPGMMRELM------FGGKNPSLNTKLFPLIEWLF 287
G+D + G G ISVT+N+ P M +L ++N +L PL + LF
Sbjct: 186 GDDATAVELML-LGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHKALF 244
Query: 288 QEPNPIPLNTALAQLGVVRPVFRLP 312
E NPIP+ AL ++G++ RLP
Sbjct: 245 IESNPIPVKWALHEMGLIPEGIRLP 269
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G++E GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIREATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALDF-MQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 137/273 (50%), Gaps = 15/273 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I A+ TP+ +G D EA +L+ + NG + ++V GTTGE ++++EH +I V
Sbjct: 6 IVALITPF-KEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVK 64
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+KVI TG N+T EA+H T VG AL + PYY K + GL HF +V
Sbjct: 65 RAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE 124
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKECVGN-DRVEHYT---GNGIVVW 232
P IIYN+PSRT +I + +A + N+ KE N DR+ G V
Sbjct: 125 VDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLGESFSVL 184
Query: 233 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG------KNPSLNTKLFPLIEWL 286
SG DD GA GVISV +N++P ++EL+ + ++ L L + L
Sbjct: 185 SG-DDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDLFKVL 243
Query: 287 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQE 319
F E NPIP+ TA LG+ FRLP + E
Sbjct: 244 FIETNPIPVKTACWMLGMCEKEFRLPLTEMSPE 276
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I++NVPSRTG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILFNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
pdb|1S5V|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
Length = 292
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PY+ + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYFNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 147/287 (51%), Gaps = 13/287 (4%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
+ TA+ TP+ +G D LVN I NG ++VGGTTGE ++ +E + L H V
Sbjct: 16 IATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVV 75
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+ V VI TGSN+T +I T++ VG+ A + + PYY K S EG+ HF ++
Sbjct: 76 SVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAE 135
Query: 179 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVW 232
P ++YNVP R+ I + +++ N+ +K+ G+ + T + V+
Sbjct: 136 STPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTADDFAVY 195
Query: 233 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIEWL 286
SG+D A GA G++SV S+++ M+E++ K L+ L + + L
Sbjct: 196 SGDDGLTLPA-MAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDSL 254
Query: 287 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 333
F P+P P+ TAL +G+ RLP +PL +E+R +++ I R
Sbjct: 255 FMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQSIPR 301
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 140/275 (50%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ G TGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGVTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALDF-MQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 140/275 (50%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+ E GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 140/275 (50%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPS TG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSHTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
pdb|2A6N|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
Length = 292
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 140/275 (50%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPS TG D+ P + +A+ N+ G+KE GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 137/276 (49%), Gaps = 16/276 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I A+ TP G L++ + NG ++ GTTGE +S DEH ++ T+
Sbjct: 30 IVALVTPMDEKGNVSRSCLKKLIDYHVANGTSAIVSVGTTGESATLSHDEHGDVVMMTLE 89
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + + EGL HF ++
Sbjct: 90 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPTQEGLFQHFKAIAEH 149
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ +KE GN +++ + ++ S
Sbjct: 150 TDLPQILYNVPSRTGCDMLPETVGRLAEIKNIIAIKEATGNLTRVHQIKELVSDDFILLS 209
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVPGMMREL-------MFGGKNPSLNTKLFPLIEWL 286
G+D D G GVISVT+N+ M ++ F + ++N +L PL L
Sbjct: 210 GDDASALD-FMQLGGHGVISVTANVAAREMADMCKLAAEGQF-AEARAINQRLMPLHNKL 267
Query: 287 FQEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
F EPNPIP+ A LG+V RLP P+ R
Sbjct: 268 FVEPNPIPVKWACKALGLVATDTLRLPMTPITDHGR 303
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 140/275 (50%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ G+TGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGSTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PYY + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+ E GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 13/287 (4%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
+ TA+ TP+ +G D LVN I NG ++VGGTTGE ++ +E + L H V
Sbjct: 7 IATAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVV 66
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+ V VI TGSN+T +I T++ VG+ A + + PYY K S EG+ HF ++
Sbjct: 67 SVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAE 126
Query: 179 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVW 232
P ++YNVP R+ I + +++ N+ + + G+ + T + V+
Sbjct: 127 STPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIXDAGGDVLTMTEIIEKTADDFAVY 186
Query: 233 SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIEWL 286
SG+D A GA G++SV S+++ M+E++ K L+ L + + L
Sbjct: 187 SGDDGLTLPA-MAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDSL 245
Query: 287 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 333
F P+P P+ TAL +G+ RLP +PL +E+R +++ I R
Sbjct: 246 FMAPSPTPVKTALQMVGLDVGSVRLPLLPLTEEERVTLQSVMQSIPR 292
>pdb|3FLU|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
Length = 297
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
+ A+ TP DG E DL++ I NG +G++ GTTGE +S +EH +I V
Sbjct: 12 LVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVK 71
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
V VI TG+N+T EAI ++ G L + PYY K S EG+ HF ++
Sbjct: 72 HVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEA 131
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN--DRVE--HYTGNGIVVWS 233
P IIYNVP RT + I +A+ PN+ GVKE GN +E + G VV S
Sbjct: 132 TSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELINRAPEGFVVLS 191
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN------PSLNTKLFPLIEWLF 287
G DD G GVI+V +N P + ++ LN +L P+ + +F
Sbjct: 192 G-DDHTALPFMLCGGHGVITVAANAAPKLFADMCRAALQGDIALARELNDRLIPIYDTMF 250
Query: 288 QEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAE 323
EP+P A++ LG P RLP VPL + +A+
Sbjct: 251 CEPSPAAPKWAVSALGRCEPHVRLPLVPLTENGQAK 286
>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w
pdb|3DEN|B Chain B, Structure Of E. Coli Dhdps Mutant Y107w
Length = 292
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 140/275 (50%), Gaps = 14/275 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
I AI TP G + L++ + +G ++ GTTGE ++ DEH ++ T++
Sbjct: 6 IVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLD 65
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
+ VI TG+N+T EAI T++ G+ L + PY+ + S EGL HF ++
Sbjct: 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYWNRPSQEGLYQHFKAIAEH 125
Query: 180 G--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWS 233
P I+YNVPSRTG D+ P + +A+ N+ G+ E GN ++++ + V+ S
Sbjct: 126 TDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLS 185
Query: 234 GNDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLF 287
G+D D G GVISVT+N+ M +L G + +N +L PL LF
Sbjct: 186 GDDASALD-FMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLF 244
Query: 288 QEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKR 321
EPNPIP+ A +LG+V RLP P+ R
Sbjct: 245 VEPNPIPVKWACKELGLVATDTLRLPMTPITDSGR 279
>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
Length = 311
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 140/295 (47%), Gaps = 21/295 (7%)
Query: 50 SAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE 109
S +D+K ++ITA TP+ DG + +A L+ + + +G+++ GTT E ++ DE
Sbjct: 2 SYQDLKECKIITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDE 61
Query: 110 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ-----GFAVGMHAALHINPYYGKT 164
+ L V +I G+N TR++I ++ GFA G L I PYY K
Sbjct: 62 ELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAG----LAIVPYYNKP 117
Query: 165 SLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVE 222
S EG+ HF ++ P IIYN+P R ++ P + +A PN+ GVKEC +
Sbjct: 118 SQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMA 177
Query: 223 H---YTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNP 273
+ + ++++G D A N GA GVISV S+ M E+ K
Sbjct: 178 YLIEHKPEEFLIYTGEDGDAFHA-MNLGADGVISVASHTNGDEMHEMFTAIAESDMKKAA 236
Query: 274 SLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 328
++ K P + LF P+P P+ L +G RLP VP P+E + +V
Sbjct: 237 AIQRKFIPKVNALFSYPSPAPVKAILNYMGFEAGPTRLPLVPAPEEDVKRIIKVV 291
>pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium
Botulinum
Length = 291
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 138/269 (51%), Gaps = 14/269 (5%)
Query: 62 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121
AI TP+ G D + +L+ I + + +IV GTTGE M+ E I ++
Sbjct: 9 AIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKV 67
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-- 179
+ VI TGSN+T +I ++ ++G+ L I PYY KT+ +GL+ HF +V
Sbjct: 68 NKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVS 127
Query: 180 GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWSGN 235
P IIYNVP RTG +I P + + + N+ VKE GN +++ G+ + ++SGN
Sbjct: 128 TPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVKEASGNISQIAQIKALCGDKLDIYSGN 187
Query: 236 DDQCHDARWNHGATGVISVTSNLVPG---MMRELMFGGK-NPSLNTKL--FPLIEWLFQE 289
DDQ G GVISV +N++P M EL GK N +L +L L LF E
Sbjct: 188 DDQIIPI-LALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALTNALFIE 246
Query: 290 PNPIPLNTALAQLGVVRPVFRLPYVPLPQ 318
NPIP+ TA+ + + RLP + +
Sbjct: 247 TNPIPVKTAMNLMNMKVGDLRLPLCEMNE 275
>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
Length = 292
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 15/267 (5%)
Query: 62 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121
A+ TP+ + + +LEA VN + N A+ +IV GTT E ++ DE +++ ++
Sbjct: 10 ALTTPF-TNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLV 68
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG- 180
V VI TG+N T ++I A+ Q A+G A + I PYY KT+ GL+ HF+++
Sbjct: 69 DKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVK 128
Query: 181 -PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTGNGIVVWSG 234
P ++YNVPSRT I P + ++Q P + +K+ + + + N ++SG
Sbjct: 129 LPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRIDTNSFALYSG 188
Query: 235 NDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTK-----LFPLIEWLFQE 289
NDD + + G GVISV +N++P + L + + L+ + + L+ L +
Sbjct: 189 NDDNVVE-YYQRGGQGVISVIANVIPKEFQAL-YDAQQSGLDIQDQFKPIGTLLSALSVD 246
Query: 290 PNPIPLNTALAQLGVVRPVFRLPYVPL 316
NPIP+ + LG RLP V L
Sbjct: 247 INPIPIKALTSYLGFGNYELRLPLVSL 273
>pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
pdb|3A5F|B Chain B, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
Length = 291
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 137/269 (50%), Gaps = 14/269 (5%)
Query: 62 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121
AI TP+ G D + +L+ I + + +IV GTTGE M+ E I ++
Sbjct: 9 AIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKV 67
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-- 179
+ VI TGSN+T +I ++ ++G+ L I PYY KT+ +GL+ HF +V
Sbjct: 68 NKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVS 127
Query: 180 GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWSGN 235
P IIYNVP RTG +I P + + + N+ V E GN +++ G+ + ++SGN
Sbjct: 128 TPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEASGNISQIAQIKALCGDKLDIYSGN 187
Query: 236 DDQCHDARWNHGATGVISVTSNLVPG---MMRELMFGGK-NPSLNTKL--FPLIEWLFQE 289
DDQ G GVISV +N++P M EL GK N +L +L L LF E
Sbjct: 188 DDQIIPI-LALGGIGVISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALTNALFIE 246
Query: 290 PNPIPLNTALAQLGVVRPVFRLPYVPLPQ 318
NPIP+ TA+ + + RLP + +
Sbjct: 247 TNPIPVKTAMNLMNMKVGDLRLPLCEMNE 275
>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI0|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI1|A Chain A, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
pdb|3DI1|B Chain B, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
Length = 295
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 15/267 (5%)
Query: 62 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121
A+ TP+ + + ++EA VN + N A+ +IV GTT E ++ DE ++ ++
Sbjct: 11 ALTTPF-TNNKVNIEALKTHVNFLLENNAQAIIVNGTTAESPTLTTDEKERILKTVIDLV 69
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG- 180
V VI TG+N T ++I A+ Q A+G A + I PYY KT+ GL+ HF+++
Sbjct: 70 DKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVK 129
Query: 181 -PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTGNGIVVWSG 234
P ++YNVPSRT I P + ++Q P + +K+ + + + N ++SG
Sbjct: 130 LPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRIDTNSFALYSG 189
Query: 235 NDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTK-----LFPLIEWLFQE 289
NDD + + G GVISV +N++P + L + + L+ + + L+ L +
Sbjct: 190 NDDNVVE-YYQRGGQGVISVIANVIPKEFQAL-YDAQQSGLDIQDQFKPIGTLLSALSVD 247
Query: 290 PNPIPLNTALAQLGVVRPVFRLPYVPL 316
NPIP+ + LG RLP V L
Sbjct: 248 INPIPIKALTSYLGFGNYELRLPLVSL 274
>pdb|2RFG|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
Length = 297
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 141/285 (49%), Gaps = 12/285 (4%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
+ A+ TP++ +G+ D +A LV+ QI +GA G++ GTTGE ++ +EH ++
Sbjct: 6 LIAMITPFI-NGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAE 64
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
V VI GSN+ EA+ + G A L + YY + S EGL HF V
Sbjct: 65 QAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDA 124
Query: 180 --GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRV--EHYTGNGIVVWSG 234
P I+YN+P R DI P + +A P + GVK+ + R+ E N +
Sbjct: 125 IDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDATTDLARISRERMLINKPFSFLS 184
Query: 235 NDDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLFQ 288
DD A G G ISV++N+ P G M+ G + ++ L PL E LF+
Sbjct: 185 GDDMTAIAYNASGGQGCISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLHEALFR 244
Query: 289 EPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 333
EP+P A + LG+ RLP VPL ++ +++ N++N++ R
Sbjct: 245 EPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINELYR 289
>pdb|3M5V|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
Length = 301
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 146/292 (50%), Gaps = 20/292 (6%)
Query: 61 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV-N 119
TA+ TP+ +G+ D ++Y L+ QI NG + ++ GTTGE ++ +EH I V
Sbjct: 14 TALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVET 72
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
C G VKV+ GSN+T EA+ + G L + PYY K + +GL H+ ++
Sbjct: 73 CKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQS 132
Query: 180 G--PTIIYNVPSRTGQDIPP-RVIHTMAQSPNLAGVKECVGN-----DRVEHYTGNGIVV 231
P ++YNVP RTG +I +I N+ GVKE GN D + H ++
Sbjct: 133 VDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRXXLI- 191
Query: 232 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG------KNPSLNTKLFPLIEW 285
SG +D + ++G GVISVTSNL+P + L + +N +L+ + +
Sbjct: 192 -SG-EDAINYPILSNGGKGVISVTSNLLPDXISALTHFALDENYKEAKKINDELYNINKI 249
Query: 286 LFQEPNPIPLNTALAQLGVVRPV-FRLPYVPLPQEKRAEFVNLVNQIGRENF 336
LF E NPIP+ TA G++ + FRLP +E A+ + + + F
Sbjct: 250 LFCESNPIPIKTAXYLAGLIESLEFRLPLCSPSKENFAKIEEVXKKYKIKGF 301
>pdb|3LER|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 301
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 143/292 (48%), Gaps = 20/292 (6%)
Query: 61 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV-N 119
TA+ TP+ +G+ D ++Y L+ QI NG + ++ GTTGE ++ +EH I V
Sbjct: 14 TALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVET 72
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
C G VKV+ GSN+T EA+ + G L + PYY K + +GL H+ ++
Sbjct: 73 CKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQS 132
Query: 180 G--PTIIYNVPSRTGQDIPP-RVIHTMAQSPNLAGVKECVGN-----DRVEHYTGNGIVV 231
P ++YNVP RTG +I +I N+ GV E GN D + H ++
Sbjct: 133 VDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVXEASGNIDKCVDLLAHEPRXXLI- 191
Query: 232 WSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG------KNPSLNTKLFPLIEW 285
+D + ++G GVISVTSNL+P + L + +N +L+ + +
Sbjct: 192 --SGEDAINYPILSNGGKGVISVTSNLLPDXISALTHFALDENYKEAKKINDELYNINKI 249
Query: 286 LFQEPNPIPLNTALAQLGVVRPV-FRLPYVPLPQEKRAEFVNLVNQIGRENF 336
LF E NPIP+ TA G++ + FRLP +E A+ + + + F
Sbjct: 250 LFCESNPIPIKTAXYLAGLIESLEFRLPLCSPSKENFAKIEEVXKKYKIKGF 301
>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
Length = 292
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 135/291 (46%), Gaps = 25/291 (8%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
ITA+ TP+ D R D A DLV QI G+ G++ GTTGE +S EH ++ T+
Sbjct: 6 ITALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIK 64
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV--L 177
V VI GSNST EAI G L ++PYY K + EG+ HF ++
Sbjct: 65 TANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAA 124
Query: 178 SMGPTIIYNVPSRTGQDIPPRVIHTMAQ----SPNLAGVKECVGN------DRVEHYTGN 227
S P I+YN+P R+ +I + T+A+ PN+ GV + GN +R+ G
Sbjct: 125 STIPIIVYNIPGRSAIEIH---VETLARIFEDCPNVKGVXDATGNLLRPSLERMA--CGE 179
Query: 228 GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNP------SLNTKLFP 281
+ +G D HG G ISVT+N+ P + + N L +L P
Sbjct: 180 DFNLLTGEDGTAL-GYMAHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMP 238
Query: 282 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332
L LF E NP AL +LG +R RLP V + + E + + G
Sbjct: 239 LHRALFLETNPAGAKYALQRLGRMRGDLRLPLVTISPSFQEEIDDAMRHAG 289
>pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
Length = 315
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 119
+TA+ TP+ +G D +A+ + V QI G G+ GTTGE ++ +EH +I V
Sbjct: 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVE 86
Query: 120 CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179
V V+ GSNST EA+ + G A L + PYY + + GL +HF S+
Sbjct: 87 QVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKA 146
Query: 180 --GPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN----DRVEHYTGNGIVVW 232
P IIYN+PSR+ D+ + + + N+ GVK+ G G V
Sbjct: 147 ISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDATGKIERASEQREKCGKDFVQL 206
Query: 233 SGNDDQCHDARWN-HGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIEW 285
SG+D C +N HG G ISV+SN+ P + +L LN L PL
Sbjct: 207 SGDD--CTALGFNAHGGVGCISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMPLNRA 264
Query: 286 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPL 316
+F EP+P + A A+LG+ + R P VPL
Sbjct: 265 VFIEPSPAGIKYAAAKLGLCGTIVRSPIVPL 295
>pdb|1XXX|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|F Chain F, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|G Chain G, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|H Chain H, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
Length = 303
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 16/253 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
L+TA+ TP+ DG D L N + G +G++V GTTGE + E I L+ +
Sbjct: 18 LLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVL 77
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
G +VI G+ T +I + A G H L + PYY K GL +HF +V
Sbjct: 78 EAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVAD 137
Query: 179 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN--DRVEHYTGNGIVVWSG 234
P ++Y++P R+ I P I +A PN+ GVK+ + + G+ +SG
Sbjct: 138 ATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKDAKADLHSGAQIMADTGLAYYSG 197
Query: 235 NDDQCHDARWNHGATGVISVTSNLVPGMMRELM--FGGKNPSLNTKLFPLIEWLFQEPNP 292
DD + GATG ISV ++L G +REL+ FG + + K+ +
Sbjct: 198 -DDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVA-------- 248
Query: 293 IPLNTALAQLGVV 305
PL A+++LG V
Sbjct: 249 -PLCNAMSRLGGV 260
>pdb|3L21|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|C Chain C, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|D Chain D, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|E Chain E, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|F Chain F, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
Length = 304
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 16/253 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
L+TA+ TP+ DG D L N + G +G++V GTTGE + E I L+ +
Sbjct: 19 LLTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVL 78
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
G +VI G+ T +I + A G H L + PYY K GL +HF +V
Sbjct: 79 EAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVAD 138
Query: 179 MG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN--DRVEHYTGNGIVVWSG 234
P ++Y++P R+ I P I +A PN+ GV + + + G+ +SG
Sbjct: 139 ATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDAKADLHSGAQIMADTGLAYYSG 198
Query: 235 NDDQCHDARWNHGATGVISVTSNLVPGMMRELM--FGGKNPSLNTKLFPLIEWLFQEPNP 292
DD + GATG ISV ++L G +REL+ FG + + K+ +
Sbjct: 199 -DDALNLPWLRMGATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVA-------- 249
Query: 293 IPLNTALAQLGVV 305
PL A+++LG V
Sbjct: 250 -PLXNAMSRLGGV 261
>pdb|3CPR|A Chain A, The Crystal Structure Of Corynebacterium Glutamicum
Dihydrodipicolinate Synthase To 2.2 A Resolution
pdb|3CPR|B Chain B, The Crystal Structure Of Corynebacterium Glutamicum
Dihydrodipicolinate Synthase To 2.2 A Resolution
Length = 304
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 15/234 (6%)
Query: 62 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121
A+ TP+ G D+ A ++ + G + +++ GTTGE + E + L+
Sbjct: 23 AMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEV 82
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG- 180
G K+I G+N+TR ++ E + G L + PYY K S EGL++HF ++ +
Sbjct: 83 GDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATE 142
Query: 181 -PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHYTGNGIVVWSGN 235
P +Y++P R+G I + +++ P + V + G+ + TG + W
Sbjct: 143 VPICLYDIPGRSGIPIESDTMRRLSELPTILAVXDAKGDLVAATSLIKETG---LAWYSG 199
Query: 236 DDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSL------NTKLFPLI 283
DD + G +G ISV + P +REL + L N KL PL+
Sbjct: 200 DDPLNLVWLALGGSGFISVIGHAAPTALRELYTSFEEGDLVRAREINAKLSPLV 253
>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
+I + T + DG+ D L++ I G +G+ G+ GE + +E + +
Sbjct: 35 IIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAI 94
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+ V V+ TG + RE I ++ G + INPYY K S LI +F+ V
Sbjct: 95 DHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD 154
Query: 179 --MGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGNDRVEH-----YTGNG-- 228
P ++YN P+ TGQD+ P ++ T+A S N+ G+K+ + D V H +T G
Sbjct: 155 SVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI--DSVAHLRSMIHTVKGAH 212
Query: 229 --IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM 267
V G DD + G G IS + N P + L+
Sbjct: 213 PHFTVLCGYDDHLFNTLL-LGGDGAISASGNFAPQVSVNLL 252
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
+I + T + DG+ D L++ I G +G+ G+ GE + +E + +
Sbjct: 6 IIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAI 65
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+ V V+ TG + RE I ++ G + INPYY K S LI +F+ V
Sbjct: 66 DHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD 125
Query: 179 --MGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGNDRVEH-----YTGNG-- 228
P ++YN P+ TGQD+ P ++ T+A S N+ G+K+ + D V H +T G
Sbjct: 126 SVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI--DSVAHLRSMIHTVKGAH 183
Query: 229 --IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM 267
V G DD + G G IS + N P + L+
Sbjct: 184 PHFTVLCGYDDHLFNTLL-LGGDGAISASGNFAPQVSVNLL 223
>pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|B Chain B, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|C Chain C, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|D Chain D, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
Length = 297
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 8 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 67
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 68 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 127
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+R+G + I+T+ P + +K+ G+ R EH +
Sbjct: 128 SADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 184
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 185 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 243
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 244 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 296
>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
+I + T + DG+ D L++ I G +G+ G+ GE + +E + +
Sbjct: 35 IIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAI 94
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+ V V+ TG + RE I ++ G + INPYY K S LI +F+ V
Sbjct: 95 DHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD 154
Query: 179 --MGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGNDRVEH-----YTGNG-- 228
P +YN P+ TGQD+ P ++ T+A S N+ G+K+ + D V H +T G
Sbjct: 155 SVTLPVXLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI--DSVAHLRSXIHTVKGAH 212
Query: 229 --IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM 267
V G DD + G G IS + N P + L+
Sbjct: 213 PHFTVLCGYDDHLFNTLL-LGGDGAISASGNFAPQVSVNLL 252
>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
Length = 298
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
+I + T + DG+ D L++ I G +G+ G+ GE + +E + +
Sbjct: 6 IIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAI 65
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+ V V+ TG + RE I ++ G + INPYY K S LI +F+ V
Sbjct: 66 DHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD 125
Query: 179 --MGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGNDRVEH-----YTGNG-- 228
P ++YN P+ TGQD+ P ++ T+A S N+ G+ + + D V H +T G
Sbjct: 126 SVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIXDTI--DSVAHLRSMIHTVKGAH 183
Query: 229 --IVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELM 267
V G DD + G G IS + N P + L+
Sbjct: 184 PHFTVLCGYDDHLFNTLL-LGGDGAISASGNFAPQVSVNLL 223
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGRFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 318
>pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|B Chain B, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|C Chain C, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|D Chain D, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCX|A Chain A, L-Kdo Aldolase
pdb|3LCX|B Chain B, L-Kdo Aldolase
pdb|3LCX|C Chain C, L-Kdo Aldolase
pdb|3LCX|D Chain D, L-Kdo Aldolase
Length = 319
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSERAQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y SLE H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRHGFDAVSAVTPFYYPFSLEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLGQIYTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + V+ P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGIFRGLKTVLHYMDVISVPLCRKPFGPVDEKCLPELKALAQQLMQER 318
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 15 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 74
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 75 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 134
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 135 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 191
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 192 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 250
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 251 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 303
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 20/292 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 8 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 67
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G +T E+ G A + P+Y S E H+ +++
Sbjct: 68 EEGKGKIKLIAHVGCVTTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 127
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 128 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 184
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 185 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 243
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 334
+ L + L T L + VV P+ R P+ P+ ++ + E L Q+ +E
Sbjct: 244 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYQPELKALAQQLMQE 295
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 20/292 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 15 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 74
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 75 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 134
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 135 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 191
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 192 VLYNGYDN-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 250
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 334
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 251 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQE 302
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGLFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 318
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 318
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGIFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 318
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGWFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 318
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 30 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 89
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 90 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 149
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 150 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 206
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 207 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 265
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + V+ P+ R P+ P+ ++ E L Q+ +E
Sbjct: 266 DLLIKTGIFRGLKTVLHYMDVISVPLCRKPFGPVDEKYLPELKALAQQLMQER 318
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 8 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 67
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G +T E+ G A + P+Y S E H+ +++
Sbjct: 68 EEGKGKIKLIAHVGCVTTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 127
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + +K+ G+ R EH +
Sbjct: 128 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRREH---PDL 184
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 185 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 243
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 244 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 296
>pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
Length = 303
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 20/293 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 15 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 74
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 75 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 134
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + + + G+ R EH +
Sbjct: 135 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRREH---PDL 191
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 192 VLYNGYDE-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 250
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGREN 335
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 251 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQER 303
>pdb|2WKJ|A Chain A, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|B Chain B, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|C Chain C, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|D Chain D, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
Length = 303
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 20/292 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 15 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 74
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 75 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 134
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + + + G+ R EH +
Sbjct: 135 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRREH---PDL 191
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 192 VLYNGYDN-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 250
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 334
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 251 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQE 302
>pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WPB|A Chain A, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|B Chain B, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|C Chain C, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|D Chain D, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2XFW|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
Length = 304
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 20/292 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ A+ TP+ D + LV I G +G+ VGG+TGE + S E ++
Sbjct: 15 VMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA 74
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178
+K+I + G ST E+ G A + P+Y S E H+ +++
Sbjct: 75 EEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 134
Query: 179 MG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN------DRVEHYTGNGI 229
P ++YN+P+ +G + I+T+ P + + + G+ R EH +
Sbjct: 135 SADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRREH---PDL 191
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLV----PGMMRELMFGGKNPS--LNTKLFPLI 283
V+++G D+ + GA G I T N++ G+++ L G + L T+ +I
Sbjct: 192 VLYNGYDN-IFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 250
Query: 284 EWLFQEPNPIPLNTALAQLGVVR-PVFRLPYVPLPQEKRAEFVNLVNQIGRE 334
+ L + L T L + VV P+ R P+ P+ ++ E L Q+ +E
Sbjct: 251 DLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQE 302
>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase
Length = 304
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG 122
+ TP+ D ++ ++ G +V G+ GE ++ E + ++
Sbjct: 19 VTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP 78
Query: 123 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY--GKTSLEGLISHFDSV--LS 178
+ ++ +G ST+ + T VG AA+ + P Y G+ S LI H+ V LS
Sbjct: 79 KNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS 138
Query: 179 MGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN 218
P ++Y+VP+ TG D+P + T++Q PN+ G+K+ G+
Sbjct: 139 PIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGD 178
>pdb|2PCQ|A Chain A, Crystal Structure Of Putative Dihydrodipicolinate Synthase
(Ttha0737) From Thermus Thermophilus Hb8
Length = 283
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 17/265 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
++ I TP+ +GR D EA+ +L + +G++V G+ GEG ++ +E +
Sbjct: 2 ILPPIPTPFDREGRLDEEAFRELAQA-LEPLVDGLLVYGSNGEGVHLTPEER----ARGL 56
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL-EGLISHFDSVL 177
+ + +A A + A G A L P Y SL GL+ +++++
Sbjct: 57 RALRPRKPFLVGLXEETLPQAEGALLEAKAAGAXALLATPPRYYHGSLGAGLLRYYEALA 116
Query: 178 SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHYTG--NGIVVWSG 234
P +Y+VP T D+P + +A PN+ G+K+ G+ R+ Y V++G
Sbjct: 117 EKXPLFLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSGDLSRIAFYQARLQEFRVYTG 176
Query: 235 NDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG------GKNPSLNTKLFPLIEWLFQ 288
+ A GA G I +NL P R L+ + L KLFPL + L +
Sbjct: 177 HAPTFLGA-LALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQELQKKLFPLGDLLAK 235
Query: 289 EPNPIPLNTALAQLGVVRPVFRLPY 313
P+ L AL LG+ R PY
Sbjct: 236 GGVPL-LKQALRHLGLPAGYPRPPY 259
>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase Bound To Pyruvate
Length = 307
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG 122
+ TP+ D ++ ++ G +V G+ GE ++ E + ++
Sbjct: 22 VTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP 81
Query: 123 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY--GKTSLEGLISHFDSV--LS 178
+ ++ +G ST+ + T VG AA+ + P Y G+ S LI H+ V LS
Sbjct: 82 KNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS 141
Query: 179 MGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN 218
P ++Y+VP+ TG D+P + T++Q PN+ G+ + G+
Sbjct: 142 PIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGD 181
>pdb|3QFE|A Chain A, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
pdb|3QFE|B Chain B, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
Length = 318
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 15/213 (7%)
Query: 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 132
DL + + +G G+++ GT E L++ +E LI G ++ G
Sbjct: 29 LDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG 88
Query: 133 SNSTREAIHATEQGFAVGMHAALHINP-YYGKTSLEGLI-SHFDSVLSMG--PTIIYNVP 188
++STR+ + G + L + P Y+GK + +I S FD V P +IYN P
Sbjct: 89 AHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFP 148
Query: 189 SRT-GQDIPPRVIHTMA-QSPNLAGVK-ECVGNDRVEHYTGN----GIVVWSGNDDQCHD 241
G D+ +I T+A ++PN+ GVK C ++ V+ G D
Sbjct: 149 GVCNGIDLDSDMITTIARKNPNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDFLIG 208
Query: 242 ARWNHGATGVISVTSNLVP---GMMRELMFGGK 271
+ G+ G I+ +N+ P + EL GK
Sbjct: 209 G-LSVGSAGCIAAFANVFPKTVSKIYELYKAGK 240
>pdb|3NA8|A Chain A, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|B Chain B, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|C Chain C, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|D Chain D, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
Length = 315
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 18/282 (6%)
Query: 65 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS---WDEHIMLIGHTVNCF 121
TP+ DG DL A + I G + G+TGEG +S WDE ++ T+
Sbjct: 34 TPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDE---VVDFTLKTV 90
Query: 122 GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV-LSMG 180
V I + +T + + + ++G A + Y K + + H+ +V ++G
Sbjct: 91 AHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVXVLPISYWKLNEAEVFQHYRAVGEAIG 150
Query: 181 -PTIIYNVPSRTGQDIPPRVI-HTMAQSPNLAGVKECVGNDRVEH---YTGNGIVVWSGN 235
P +YN P +G D +I + + N+ VKE G+ + H G G V +
Sbjct: 151 VPVXLYNNPGTSGIDXSVELILRIVREVDNVTXVKESTGDIQRXHKLRLLGEGRVPFYNG 210
Query: 236 DDQCHDARWNHGATGVISVTSNLVP---GMMRELMFGG---KNPSLNTKLFPLIEWLFQE 289
+ + GA G S NL+P G + + + G K +L + PL++++ +
Sbjct: 211 XNPLALEAFVAGAKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLPLLDFILRR 270
Query: 290 PNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQI 331
P + L G+ RLP L E L+ ++
Sbjct: 271 GLPTTIKAGLGLSGLEVGAPRLPVQALDTEGCRYLQGLLEEL 312
>pdb|2NUW|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure At 1.8 A Resolution
pdb|2NUW|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure At 1.8 A Resolution
pdb|2NUX|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure In P6522 At 2.5 A
Resolution
pdb|2NUX|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure In P6522 At 2.5 A
Resolution
pdb|2NUY|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius In Complex With Pyruvate
pdb|2NUY|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius In Complex With Pyruvate
Length = 288
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 107/225 (47%), Gaps = 20/225 (8%)
Query: 57 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGH 116
+ +I+ I TP+ G+ +++A + G + + V GTTG G +S DE +
Sbjct: 1 MEIISPIITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNA 60
Query: 117 TVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV 176
+ + +G+ N E + + + +G+ + H Y+ + + L +++ +
Sbjct: 61 LYDVTHKLIFQVGSLNLNDVMELVKFSNEMDILGVSS--HSPYYFPRLPEKFLAKYYEEI 118
Query: 177 --LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEH---YTGN--GI 229
+S IYN P+ TG DIPP ++ ++ + G+K+ N + H Y N G+
Sbjct: 119 ARISSHSLYIYNYPAATGYDIPPSILKSLP----VKGIKDT--NQDLAHSLEYKLNLPGV 172
Query: 230 VVWSGNDDQCHDARWNHGATGVISVTSNLVPGMM---RELMFGGK 271
V++G++ + + + GV++ +N +P ++ R+L+ GK
Sbjct: 173 KVYNGSNTLIYYSLLS--LDGVVASFTNFIPEVIVKQRDLIKQGK 215
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 118
L A+ TP+ DG D++A + NG + + + GTTGEG + E ++ +
Sbjct: 7 LSAALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFI 66
Query: 119 NCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP-YYGKTSLEGLISHFDSVL 177
A +++ +S +A + + G L P Y+ S +GL + F +V
Sbjct: 67 AAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVF 126
Query: 178 S-MGP----TIIYNVPSRTGQDIPPRVIHTM-AQSPNL-AGVKECVGN----DRVEHYTG 226
S +G ++YN+PS T + ++ + A P + GVK+ GN +R+ G
Sbjct: 127 SKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHG 186
Query: 227 NGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWL 286
+ ++ D R G G IS +N + +R + GK+ + ++ L+ L
Sbjct: 187 DLAILIGDERDLARGVRL--GGQGAISGVANFLTQEVRAMAVDGKD---DPRIVDLVVEL 241
Query: 287 FQEP 290
+ P
Sbjct: 242 LKFP 245
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 58 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 117
+IT I TP+ D R D E I G + + V GTTG G +S +E + +
Sbjct: 3 EIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEK---LENL 59
Query: 118 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KTSLEGLISHFDSV 176
+ + K+I G + +AI + + PYY + S + L+ +F ++
Sbjct: 60 KAVYDVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTL 119
Query: 177 LSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN--DRVEHYTGN-GIVV 231
+ P +YN P+ TG+DI +V + GVK+ + N +++ N ++V
Sbjct: 120 CEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVKDTIENIIHTLDYKRLNPNMLV 176
Query: 232 WSGNDDQCHDARWNHGATGVISVTSNLVP 260
+SG+ D + G G ++ SN +P
Sbjct: 177 YSGS-DMLIATVASTGLDGNVAAGSNYLP 204
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 58 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 117
+IT I TP+ D R D E I G + + V GTTG G +S +E + +
Sbjct: 2 EIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEK---LENL 58
Query: 118 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KTSLEGLISHFDSV 176
+ + K+I G + +AI + + PYY + S + L+ +F ++
Sbjct: 59 KAVYDVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTL 118
Query: 177 LSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN--DRVEHYTGN-GIVV 231
+ P +YN P+ TG+DI +V + GVK+ + N +++ N ++V
Sbjct: 119 CEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVKDTIENIIHTLDYKRLNPNMLV 175
Query: 232 WSGNDDQCHDARWNHGATGVISVTSNLVP 260
+SG+ D + G G ++ SN +P
Sbjct: 176 YSGS-DMLIATVASTGLDGNVAAGSNYLP 203
>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 91 EGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150
+G+ VGG+TGE ++S +E + + + +I GS + +EA+ + +G
Sbjct: 40 DGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELG 99
Query: 151 MHAALHINPYYGKTSLEGLISHFDSVLSMGPT--IIYNVPSRTGQDIPPRVIHTMAQSPN 208
+ P+Y K S + ++D++++ + I+Y++P TG ++ + ++P
Sbjct: 100 YDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPK 159
Query: 209 LAGVKECVGN----DRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 258
+ GVK G+ +R++ N + +W+G D+ A + G G I T N+
Sbjct: 160 VLGVKFTAGDFYLLERLKKAYPNHL-IWAGFDEMMLPAA-SLGVDGAIGSTFNV 211
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 58 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 117
+IT I TP+ D R D E I G + + V GTTG G +S +E + +
Sbjct: 3 EIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEK---LENL 59
Query: 118 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY-YGKTSLEGLISHFDSV 176
+ + K+I G + +AI + + PY Y + S + L+ +F ++
Sbjct: 60 KAVYDVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYFYPRMSEKHLVKYFKTL 119
Query: 177 LSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN--DRVEHYTGN-GIVV 231
+ P ++N P+ TG+DI +V + GVK+ + N +++ N ++V
Sbjct: 120 CEVSPHPVYLFNYPTATGKDIDAKVAKEIG---CFTGVKDTIENIIHTLDYKRLNPNMLV 176
Query: 232 WSGNDDQCHDARWNHGATGVISVTSNLVP 260
+SG+ D + G G ++ SN +P
Sbjct: 177 YSGS-DMLIATVASTGLDGNVAFGSNYLP 204
>pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
Length = 286
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 17/201 (8%)
Query: 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN 130
GR D E + + V G + + V GTTG G +S E + L T A+ +VI
Sbjct: 14 GRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMEL---TDAATSAARRVIVQ 70
Query: 131 TGSNSTREAIHATEQGFAVGMHAALHINPYYG-KTSLEGLISHFDSVLSMG--PTIIYNV 187
S + EAI + + G A + PYY + S + +F + S P +YN
Sbjct: 71 VASLNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNY 130
Query: 188 PSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNG-----IVVWSGNDDQCHDA 242
P+ G+D+ R + + GVK+ N+ + H V++G+D A
Sbjct: 131 PAAVGRDVDARAAKELG---CIRGVKDT--NESLAHTLAYKRYLPQARVYNGSDSLVF-A 184
Query: 243 RWNHGATGVISVTSNLVPGMM 263
+ GV++ ++N +P ++
Sbjct: 185 SFAVRLDGVVASSANYLPELL 205
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 52 EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEH 110
+D+K L A+ P+ +G+ + + + I +G+ V G++GE L++ ++
Sbjct: 8 KDLKGL--YAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQK 65
Query: 111 IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI 170
+ G VK+I GS EAI + +G A + P+Y + E +
Sbjct: 66 KQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIR 125
Query: 171 SHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHY 224
++ ++ + IIY +P TG +I + + GVK N +R+
Sbjct: 126 DYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGVKYTAPNFFLLERIRKA 185
Query: 225 TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 258
+ +++ SG D+ A + G G I T N+
Sbjct: 186 FPDKLIL-SGFDEMLVQATIS-GVDGAIGSTYNV 217
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 11/214 (5%)
Query: 52 EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEH 110
+D+K L A+ P+ +G+ + + + I +G+ V G++GE L++ ++
Sbjct: 9 KDLKGL--YAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQK 66
Query: 111 IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI 170
+ G VK+I GS EAI + +G A + P+Y + E +
Sbjct: 67 KQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIR 126
Query: 171 SHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHY 224
++ ++ + IIY +P TG +I + + GV N +R+
Sbjct: 127 DYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGVXYTAPNFFLLERIRKA 186
Query: 225 TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 258
+ +++ SG D+ A + G G I T N+
Sbjct: 187 FPDKLIL-SGFDEMLVQATIS-GVDGAIGSTYNV 218
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 11/214 (5%)
Query: 52 EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEH 110
+D+K L A+ P+ +G+ + + + I +G+ V G++GE L++ ++
Sbjct: 8 KDLKGL--YAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQK 65
Query: 111 IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI 170
+ G VK+I GS EAI + +G A + P+Y + E +
Sbjct: 66 KQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIR 125
Query: 171 SHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHY 224
++ ++ + IIY +P TG +I + + GV N +R+
Sbjct: 126 DYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGVXYTAPNFFLLERIRKA 185
Query: 225 TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 258
+ +++ SG D+ A + G G I T N+
Sbjct: 186 FPDKLIL-SGFDEMLVQATIS-GVDGAIGSTYNV 217
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 11/214 (5%)
Query: 52 EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEH 110
+D+K L A+ P+ +G+ + + + I +G+ V G++GE L++ ++
Sbjct: 8 KDLKGL--YAALLVPFDENGQVNEQGLKQIAQNAIETEELDGLYVNGSSGENFLLNTEQK 65
Query: 111 IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI 170
+ G VK+I GS EAI + +G A + P+Y + E +
Sbjct: 66 KQVFKVAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIR 125
Query: 171 SHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN----DRVEHY 224
++ ++ + IIY +P TG +I + + GV N +R+
Sbjct: 126 DYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGVCYTAPNFFLLERIRKA 185
Query: 225 TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 258
+ +++ SG D+ A + G G I T N+
Sbjct: 186 FPDKLIL-SGFDEMLVQATIS-GVDGAIGSTYNV 217
>pdb|3E96|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Clausii
pdb|3E96|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Clausii
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 15/228 (6%)
Query: 55 KALRLITAIK-TPYL-PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIM 112
KAL I+ I TP+ DG D Y + V+ + NG + ++ G T E +S +E
Sbjct: 10 KALETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKE 69
Query: 113 LIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISH 172
+ TV V+ G +T AI A G A + P + + G+ ++
Sbjct: 70 EVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAY 128
Query: 173 FDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYT 225
F ++ P+++Y +I RV+ +A NL GVK + + V
Sbjct: 129 FRDIIEALDFPSLVY----FKDPEISDRVLVDLAPLQNLVGVKYAINDLPRFAKVVRSIP 184
Query: 226 GNGIVVW-SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKN 272
+ W G ++ W+ GA G S NL+P E++ +N
Sbjct: 185 EEHQIAWICGTAEKWAPFFWHAGAKGFTSGLVNLLPQKAVEMLEALRN 232
>pdb|3EB2|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
Length = 300
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 12/200 (6%)
Query: 65 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS 124
+P +GR + L + I G G+ G+TGE + + ++ T+
Sbjct: 14 SPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRR 73
Query: 125 VKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PT 182
V V+ S S +A+ + +G L I Y + S+F ++ P
Sbjct: 74 VPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPV 133
Query: 183 IIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDA 242
+IY P D+ VI +A+ P + +K+ N TG + + ++C DA
Sbjct: 134 VIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTN------TGRLLSII----NRCGDA 183
Query: 243 RWNHGATGVISVTSNLVPGM 262
A+ I L+ G+
Sbjct: 184 LQVFSASAHIPAAVMLIGGV 203
>pdb|3D0C|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
pdb|3D0C|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
Length = 314
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 106/293 (36%), Gaps = 24/293 (8%)
Query: 55 KALRLITAIK-TPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIM 112
K I+ I P+L R D + DD V + NG E ++ G TGE ++ +E
Sbjct: 10 KRFSTISGINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQ 69
Query: 113 LIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISH 172
+ V+ G S AI + G P + + G + +
Sbjct: 70 VATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVXIHQPVHPYITDAGAVEY 128
Query: 173 FDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-DRVEHY----- 224
+ +++ P+IIY + D VI +A L G+K + + RV
Sbjct: 129 YRNIIEALDAPSIIYFKDAHLSDD----VIKELAPLDKLVGIKYAINDIQRVTQVXRAVP 184
Query: 225 TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVP----GMMRELMFGGKNPSLNT--K 278
+ + G ++ ++ GA G S N+ P ++ L G + +
Sbjct: 185 KSSNVAFICGTAEKWAPFFYHAGAVGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWED 244
Query: 279 LFPLIEWLFQE---PNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 328
+ P + + N + + A QLG+ V R P PL R E L+
Sbjct: 245 VVPFEDLRAKHNNGNNVVIIKEAXEQLGLRAGVTREPVNPLSPNDRLELEELL 297
>pdb|2R8W|A Chain A, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
pdb|2R8W|B Chain B, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
Length = 332
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 16/232 (6%)
Query: 39 PMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGT 98
P+++ E T + + A + TP GR D+EA+ L+ + + + G+
Sbjct: 23 PIKARETDXATRFKGLSAFPI-----TPADEAGRVDIEAFSALIARLDAAEVDSVGILGS 77
Query: 99 TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158
TG ++ +E I + G+ T EA+ + A G A L
Sbjct: 78 TGIYXYLTREERRRAIEAAATILRGRRTLXAGIGALRTDEAVALAKDAEAAGADALLLAP 137
Query: 159 PYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV 216
Y + E HF +V P IYN P+ T ++ +A PN+ +K +
Sbjct: 138 VSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKXPL 197
Query: 217 GND--------RVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVP 260
D R+ + + D C DA G T SV + L+P
Sbjct: 198 PADADYAGELARLRPKLSDDFAIGYSGDWGCTDATLAGGDTWY-SVVAGLLP 248
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 80 DLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIG--HTVNCFGASVKVIGNTGSNST 136
D+++ Q V N + G V + + + +D H+M++ V F + I + ST
Sbjct: 36 DIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST 95
Query: 137 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIP 196
R A ++ A GM A + INP T+LE L+ D VL M P GQ
Sbjct: 96 RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVN-----PGFGGQAFI 150
Query: 197 PRVIHTMA 204
P + +A
Sbjct: 151 PECLEKVA 158
>pdb|3ZWM|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWN|A Chain A, Crystal Structure Of Aplysia Cyclase Complexed With
Substrate Ngd And Product Cgdpr
pdb|3ZWN|B Chain B, Crystal Structure Of Aplysia Cyclase Complexed With
Substrate Ngd And Product Cgdpr
pdb|3ZWP|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWV|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWX|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWY|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
Length = 260
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 227 NGIVVWSGNDDQCHDARWNHGATGVISVT-SNLVPG-MMRELMFGGK--NPSLNTKLFP 281
N ++ WSG D+ HD + TG +T + +PG M+ L++ G+ NP N K+ P
Sbjct: 74 NKVMFWSGVYDEAHD----YANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCP 128
>pdb|3ZWO|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
Length = 259
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 227 NGIVVWSGNDDQCHDARWNHGATGVISVT-SNLVPG-MMRELMFGGK--NPSLNTKLFP 281
N ++ WSG D+ HD + TG +T + +PG M+ L++ G+ NP N K+ P
Sbjct: 73 NKVMFWSGVYDEAHD----YANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCP 127
>pdb|1LBE|A Chain A, Aplysia Adp Ribosyl Cyclase
pdb|1LBE|B Chain B, Aplysia Adp Ribosyl Cyclase
pdb|1R12|A Chain A, Native Aplysia Adp Ribosyl Cyclase
pdb|1R12|B Chain B, Native Aplysia Adp Ribosyl Cyclase
pdb|1R15|A Chain A, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|B Chain B, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|C Chain C, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|D Chain D, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|E Chain E, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|F Chain F, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|G Chain G, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|H Chain H, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R16|A Chain A, Aplysia Adp Ribosyl Cyclase With Bound Pyridylcarbinol And
R5p
pdb|1R16|B Chain B, Aplysia Adp Ribosyl Cyclase With Bound Pyridylcarbinol And
R5p
pdb|3I9J|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With A
Substrate Analog And A Product Nicotinamide
pdb|3I9J|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With A
Substrate Analog And A Product Nicotinamide
pdb|3I9O|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ribo-2'f-Adp Ribose
pdb|3I9O|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ribo-2'f-Adp Ribose
Length = 258
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 227 NGIVVWSGNDDQCHDARWNHGATGVISVT-SNLVPG-MMRELMFGGK--NPSLNTKLFP 281
N ++ WSG D+ HD + TG +T + +PG M+ L++ G+ NP N K+ P
Sbjct: 72 NKVMFWSGVYDEAHD----YANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCP 126
>pdb|1R0S|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Glu179ala Mutant
pdb|1R0S|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Glu179ala Mutant
Length = 258
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 227 NGIVVWSGNDDQCHDARWNHGATGVISVT-SNLVPG-MMRELMFGGK--NPSLNTKLFP 281
N ++ WSG D+ HD + TG +T + +PG M+ L++ G+ NP N K+ P
Sbjct: 72 NKVMFWSGVYDEAHD----YANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCP 126
>pdb|3I9K|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad
pdb|3I9K|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad
pdb|3I9L|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
N1-Cidpr
pdb|3I9L|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
N1-Cidpr
Length = 258
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 227 NGIVVWSGNDDQCHDARWNHGATGVISVT-SNLVPG-MMRELMFGGK--NPSLNTKLFP 281
N ++ WSG D+ HD + TG +T + +PG M+ L++ G+ NP N K+ P
Sbjct: 72 NKVMFWSGVYDEAHD----YANTGRKYITLEDTLPGYMLNSLVWCGQRANPGFNEKVCP 126
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 243 RWNHGATGVISVTSNLVP----GMMRELMFGGKNPSLNTKLFPLIEWLFQEPNP 292
RW HGA G I+VT P G + L G + + EW F EP+P
Sbjct: 248 RWRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHP 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,299,070
Number of Sequences: 62578
Number of extensions: 505140
Number of successful extensions: 1526
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 86
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)