Query 018443
Match_columns 356
No_of_seqs 203 out of 1256
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02417 dihydrodipicolinate s 100.0 8.2E-67 1.8E-71 497.2 33.8 279 55-333 1-279 (280)
2 COG0329 DapA Dihydrodipicolina 100.0 9.2E-67 2E-71 500.4 34.3 278 54-332 3-295 (299)
3 TIGR02313 HpaI-NOT-DapA 2,4-di 100.0 2E-65 4.3E-70 490.8 35.1 277 56-333 1-291 (294)
4 PF00701 DHDPS: Dihydrodipicol 100.0 8.8E-65 1.9E-69 485.1 31.1 277 55-332 1-289 (289)
5 PRK04147 N-acetylneuraminate l 100.0 2.9E-64 6.2E-69 482.7 34.3 277 55-332 3-291 (293)
6 TIGR00674 dapA dihydrodipicoli 100.0 6.7E-64 1.5E-68 478.3 33.5 273 58-331 1-285 (285)
7 TIGR00683 nanA N-acetylneurami 100.0 2.4E-63 5.2E-68 475.5 34.5 275 56-331 1-289 (290)
8 cd00954 NAL N-Acetylneuraminic 100.0 2.9E-63 6.4E-68 474.6 34.4 274 56-330 1-288 (288)
9 PRK03170 dihydrodipicolinate s 100.0 5E-63 1.1E-67 473.7 35.4 278 56-334 2-291 (292)
10 TIGR03249 KdgD 5-dehydro-4-deo 100.0 1.6E-61 3.4E-66 464.4 35.2 276 52-332 2-296 (296)
11 cd00950 DHDPS Dihydrodipicolin 100.0 1.5E-61 3.3E-66 461.5 33.2 272 56-328 1-284 (284)
12 cd00408 DHDPS-like Dihydrodipi 100.0 2.6E-61 5.7E-66 459.0 33.2 268 59-327 1-280 (281)
13 PRK03620 5-dehydro-4-deoxygluc 100.0 3.1E-60 6.8E-65 456.7 35.1 274 55-332 7-298 (303)
14 cd00953 KDG_aldolase KDG (2-ke 100.0 2.1E-60 4.6E-65 452.9 32.0 269 57-330 2-279 (279)
15 cd00952 CHBPH_aldolase Trans-o 100.0 4.8E-60 1.1E-64 456.4 33.8 273 56-331 2-306 (309)
16 cd00951 KDGDH 5-dehydro-4-deox 100.0 2.5E-59 5.3E-64 447.7 34.8 268 57-329 2-288 (289)
17 cd00945 Aldolase_Class_I Class 99.9 5E-24 1.1E-28 190.9 17.7 172 60-254 2-201 (201)
18 cd08205 RuBisCO_IV_RLP Ribulos 99.9 1.3E-21 2.9E-26 192.6 11.0 217 30-248 95-361 (367)
19 cd00377 ICL_PEPM Members of th 99.6 6.5E-15 1.4E-19 137.8 14.1 145 49-203 52-218 (243)
20 cd08210 RLP_RrRLP Ribulose bis 99.6 1.4E-14 3.1E-19 142.5 12.9 186 57-248 126-357 (364)
21 TIGR02320 PEP_mutase phosphoen 99.4 7.7E-12 1.7E-16 119.4 16.1 149 49-203 61-232 (285)
22 PF06187 DUF993: Protein of un 98.5 6.6E-06 1.4E-10 78.9 15.5 261 70-334 52-363 (382)
23 PF13714 PEP_mutase: Phosphoen 97.7 0.0012 2.5E-08 61.9 15.2 124 70-203 78-211 (238)
24 PRK11320 prpB 2-methylisocitra 97.6 0.0037 8.1E-08 60.2 17.4 136 60-203 74-226 (292)
25 TIGR02317 prpB methylisocitrat 97.5 0.0083 1.8E-07 57.6 17.0 106 71-182 83-200 (285)
26 TIGR02319 CPEP_Pphonmut carbox 97.2 0.015 3.2E-07 56.1 15.8 138 59-203 72-225 (294)
27 PRK07565 dihydroorotate dehydr 97.1 0.016 3.5E-07 56.8 15.4 83 105-189 84-175 (334)
28 PRK15063 isocitrate lyase; Pro 97.1 0.013 2.7E-07 59.0 14.6 127 74-204 159-332 (428)
29 TIGR02321 Pphn_pyruv_hyd phosp 97.1 0.027 5.9E-07 54.2 16.2 140 59-204 70-227 (290)
30 cd06556 ICL_KPHMT Members of t 97.1 0.01 2.2E-07 55.7 12.6 106 74-198 87-211 (240)
31 COG1830 FbaB DhnA-type fructos 96.4 0.16 3.4E-06 48.0 15.0 165 74-254 41-237 (265)
32 PRK09250 fructose-bisphosphate 96.3 0.084 1.8E-06 51.8 13.0 127 74-217 89-241 (348)
33 PRK05718 keto-hydroxyglutarate 96.1 0.64 1.4E-05 42.8 17.2 171 54-262 12-190 (212)
34 cd04740 DHOD_1B_like Dihydroor 96.0 1.1 2.4E-05 42.9 19.5 63 123-185 88-160 (296)
35 COG1646 Predicted phosphate-bi 95.9 0.31 6.7E-06 45.2 14.3 161 76-255 28-221 (240)
36 cd02803 OYE_like_FMN_family Ol 95.9 0.62 1.3E-05 45.2 17.2 122 78-205 143-301 (327)
37 cd00958 DhnA Class I fructose- 95.9 0.1 2.2E-06 48.3 11.2 90 75-176 142-233 (235)
38 cd02801 DUS_like_FMN Dihydrour 95.8 0.14 3E-06 46.9 11.7 84 74-159 65-160 (231)
39 cd04740 DHOD_1B_like Dihydroor 95.8 0.2 4.4E-06 48.0 13.2 84 74-160 100-189 (296)
40 PRK07259 dihydroorotate dehydr 95.7 1.8 4E-05 41.5 19.7 65 124-188 91-166 (301)
41 CHL00040 rbcL ribulose-1,5-bis 95.7 0.32 7E-06 49.9 14.7 139 63-205 170-319 (475)
42 TIGR03326 rubisco_III ribulose 95.5 0.54 1.2E-05 47.5 15.3 170 30-204 109-294 (412)
43 PRK10550 tRNA-dihydrouridine s 95.5 0.53 1.1E-05 45.8 14.9 132 73-212 72-221 (312)
44 cd08206 RuBisCO_large_I_II_III 95.4 0.4 8.7E-06 48.5 14.3 138 63-204 135-283 (414)
45 PRK01130 N-acetylmannosamine-6 95.4 2.1 4.5E-05 39.1 19.0 182 57-263 5-211 (221)
46 PRK07259 dihydroorotate dehydr 95.4 0.14 3.1E-06 49.2 10.6 83 74-159 102-191 (301)
47 TIGR01768 GGGP-family geranylg 95.3 0.9 2E-05 42.1 15.2 169 79-265 17-220 (223)
48 cd08208 RLP_Photo Ribulose bis 95.3 0.67 1.5E-05 46.9 15.5 134 64-205 164-308 (424)
49 PRK08227 autoinducer 2 aldolas 95.3 0.81 1.7E-05 43.5 14.9 158 78-254 44-226 (264)
50 cd02809 alpha_hydroxyacid_oxid 95.2 0.098 2.1E-06 50.5 8.9 94 81-179 185-281 (299)
51 cd08213 RuBisCO_large_III Ribu 95.2 0.68 1.5E-05 46.8 14.9 99 63-162 134-236 (412)
52 cd08207 RLP_NonPhot Ribulose b 95.1 0.68 1.5E-05 46.7 14.7 99 63-162 146-248 (406)
53 PRK04208 rbcL ribulose bisopho 95.1 0.97 2.1E-05 46.4 15.8 175 26-204 121-311 (468)
54 cd04737 LOX_like_FMN L-Lactate 95.0 0.17 3.7E-06 50.0 9.9 95 80-179 233-330 (351)
55 cd02810 DHOD_DHPD_FMN Dihydroo 95.0 0.27 5.9E-06 46.8 11.0 84 74-159 109-198 (289)
56 cd06557 KPHMT-like Ketopantoat 94.8 0.21 4.5E-06 47.3 9.5 110 65-195 80-210 (254)
57 cd08148 RuBisCO_large Ribulose 94.8 0.8 1.7E-05 45.6 14.0 133 28-161 90-231 (366)
58 COG2513 PrpB PEP phosphonomuta 94.8 1.4 3E-05 42.2 14.9 142 56-203 70-226 (289)
59 TIGR02708 L_lactate_ox L-lacta 94.8 0.17 3.6E-06 50.4 9.2 95 80-179 240-337 (367)
60 PRK06852 aldolase; Validated 94.6 2.5 5.5E-05 41.0 16.5 165 74-254 57-265 (304)
61 PRK00311 panB 3-methyl-2-oxobu 94.6 0.28 6.2E-06 46.6 9.9 82 65-159 83-183 (264)
62 cd02940 DHPD_FMN Dihydropyrimi 94.6 0.14 3E-06 49.4 8.0 94 65-162 169-286 (299)
63 TIGR01769 GGGP geranylgeranylg 94.5 3.8 8.2E-05 37.5 16.9 67 76-158 11-77 (205)
64 cd04741 DHOD_1A_like Dihydroor 94.5 0.27 6E-06 47.3 9.8 85 74-162 169-277 (294)
65 PF01791 DeoC: DeoC/LacD famil 94.5 0.22 4.7E-06 46.3 8.8 126 76-217 19-168 (236)
66 PF01207 Dus: Dihydrouridine s 94.4 0.44 9.5E-06 46.2 11.2 135 73-214 63-212 (309)
67 cd00945 Aldolase_Class_I Class 94.3 1.7 3.6E-05 38.2 14.0 89 73-161 62-153 (201)
68 cd00959 DeoC 2-deoxyribose-5-p 94.3 2 4.2E-05 39.0 14.6 126 73-217 14-153 (203)
69 cd07945 DRE_TIM_CMS Leptospira 94.3 0.57 1.2E-05 44.9 11.5 98 81-179 79-188 (280)
70 TIGR00262 trpA tryptophan synt 94.3 4.9 0.00011 38.0 22.3 176 66-256 14-229 (256)
71 PLN02746 hydroxymethylglutaryl 94.3 0.96 2.1E-05 44.7 13.2 38 142-179 167-209 (347)
72 PF00016 RuBisCO_large: Ribulo 94.2 0.67 1.5E-05 45.0 11.7 95 64-158 18-116 (309)
73 cd08209 RLP_DK-MTP-1-P-enolase 94.1 2.6 5.7E-05 42.3 16.1 97 64-161 128-228 (391)
74 TIGR00737 nifR3_yhdG putative 94.1 1.6 3.4E-05 42.5 14.2 84 73-158 72-168 (319)
75 PRK05286 dihydroorotate dehydr 94.0 0.17 3.6E-06 49.9 7.4 86 73-162 222-323 (344)
76 cd00959 DeoC 2-deoxyribose-5-p 93.9 3.6 7.9E-05 37.2 15.5 139 59-204 53-193 (203)
77 cd02932 OYE_YqiM_FMN Old yello 93.9 1.8 3.8E-05 42.4 14.4 128 72-205 143-310 (336)
78 CHL00200 trpA tryptophan synth 93.9 6 0.00013 37.6 22.0 176 66-256 19-233 (263)
79 cd03174 DRE_TIM_metallolyase D 93.9 1 2.2E-05 42.0 12.2 99 72-175 142-244 (265)
80 TIGR01949 AroFGH_arch predicte 93.8 0.91 2E-05 42.8 11.7 94 73-178 153-248 (258)
81 cd02810 DHOD_DHPD_FMN Dihydroo 93.8 2.4 5.1E-05 40.3 14.7 81 105-186 80-169 (289)
82 PRK04169 geranylgeranylglycery 93.8 5.8 0.00013 37.0 16.9 74 64-158 11-84 (232)
83 TIGR00222 panB 3-methyl-2-oxob 93.7 0.56 1.2E-05 44.6 10.0 84 61-158 79-181 (263)
84 PRK06552 keto-hydroxyglutarate 93.7 5.6 0.00012 36.5 16.3 169 54-256 10-185 (213)
85 cd04733 OYE_like_2_FMN Old yel 93.7 4.8 0.0001 39.4 16.9 81 77-158 150-257 (338)
86 cd04739 DHOD_like Dihydroorota 93.6 7.7 0.00017 37.9 20.3 80 107-188 84-172 (325)
87 PRK10415 tRNA-dihydrouridine s 93.6 2.1 4.6E-05 41.8 14.2 83 74-158 75-170 (321)
88 cd08212 RuBisCO_large_I Ribulo 93.6 2.6 5.6E-05 43.2 15.1 95 63-157 148-246 (450)
89 cd07944 DRE_TIM_HOA_like 4-hyd 93.6 1.5 3.3E-05 41.6 12.8 116 55-176 119-238 (266)
90 COG3142 CutC Uncharacterized p 93.6 0.35 7.5E-06 44.8 8.0 72 54-133 85-180 (241)
91 cd00958 DhnA Class I fructose- 93.5 0.82 1.8E-05 42.2 10.7 82 72-156 72-162 (235)
92 PF00290 Trp_syntA: Tryptophan 93.5 0.42 9.1E-06 45.3 8.8 56 96-159 173-228 (259)
93 cd04724 Tryptophan_synthase_al 93.5 2.1 4.5E-05 40.1 13.4 114 78-207 93-209 (242)
94 cd02933 OYE_like_FMN Old yello 93.4 1.6 3.4E-05 43.0 13.1 128 73-207 142-306 (338)
95 TIGR01037 pyrD_sub1_fam dihydr 93.4 0.81 1.7E-05 43.9 10.9 84 73-159 100-191 (300)
96 PRK01008 queuine tRNA-ribosylt 93.4 0.56 1.2E-05 46.8 9.9 81 70-160 205-286 (372)
97 cd07948 DRE_TIM_HCS Saccharomy 93.4 2 4.3E-05 40.8 13.2 98 82-180 77-183 (262)
98 PRK05692 hydroxymethylglutaryl 93.3 2.4 5.3E-05 40.7 13.8 100 70-174 149-258 (287)
99 cd00331 IGPS Indole-3-glycerol 93.3 6.2 0.00013 35.9 17.0 161 74-258 29-205 (217)
100 TIGR00677 fadh2_euk methylenet 93.3 2.5 5.4E-05 40.5 13.8 105 73-183 71-193 (281)
101 cd03307 Mta_CmuA_like MtaA_Cmu 93.3 2.8 6.2E-05 40.6 14.5 73 78-155 173-249 (326)
102 PRK09549 mtnW 2,3-diketo-5-met 93.2 2.9 6.4E-05 42.2 14.7 97 64-161 138-238 (407)
103 cd04734 OYE_like_3_FMN Old yel 93.1 4.7 0.0001 39.7 15.9 87 72-159 130-251 (343)
104 cd07943 DRE_TIM_HOA 4-hydroxy- 93.1 2.3 5E-05 40.1 13.2 100 71-175 136-239 (263)
105 PLN02535 glycolate oxidase 93.0 0.99 2.1E-05 44.9 10.9 93 82-179 237-332 (364)
106 cd07941 DRE_TIM_LeuA3 Desulfob 93.0 1.7 3.6E-05 41.4 12.1 101 80-181 82-194 (273)
107 PRK11858 aksA trans-homoaconit 92.9 2.2 4.9E-05 42.5 13.4 104 81-185 80-194 (378)
108 cd04728 ThiG Thiazole synthase 92.8 1.3 2.8E-05 41.5 10.8 89 82-179 137-226 (248)
109 TIGR03332 salvage_mtnW 2,3-dik 92.8 4.1 8.8E-05 41.2 15.0 92 70-162 149-244 (407)
110 cd04739 DHOD_like Dihydroorota 92.8 0.82 1.8E-05 44.7 10.0 85 74-161 110-199 (325)
111 PLN02424 ketopantoate hydroxym 92.8 0.97 2.1E-05 44.2 10.2 80 65-156 103-201 (332)
112 cd07939 DRE_TIM_NifV Streptomy 92.8 2.6 5.7E-05 39.6 13.1 42 139-181 112-153 (259)
113 TIGR00676 fadh2 5,10-methylene 92.7 2.9 6.3E-05 39.8 13.4 126 73-205 70-222 (272)
114 cd02812 PcrB_like PcrB_like pr 92.7 5.8 0.00013 36.7 14.9 180 66-266 5-217 (219)
115 cd02930 DCR_FMN 2,4-dienoyl-Co 92.7 4.2 9.2E-05 40.1 14.9 121 78-205 139-296 (353)
116 cd00452 KDPG_aldolase KDPG and 92.6 1.3 2.7E-05 39.7 10.3 97 80-207 67-164 (190)
117 PRK08318 dihydropyrimidine deh 92.6 0.75 1.6E-05 46.5 9.7 85 74-162 178-287 (420)
118 PRK14024 phosphoribosyl isomer 92.6 0.64 1.4E-05 43.4 8.6 93 77-174 147-240 (241)
119 cd08211 RuBisCO_large_II Ribul 92.6 2.6 5.7E-05 42.9 13.4 128 30-158 119-263 (439)
120 cd00381 IMPDH IMPDH: The catal 92.6 2.6 5.7E-05 41.2 13.1 68 78-156 95-162 (325)
121 cd07939 DRE_TIM_NifV Streptomy 92.5 3.3 7E-05 39.0 13.3 113 56-176 121-237 (259)
122 cd03332 LMO_FMN L-Lactate 2-mo 92.5 0.65 1.4E-05 46.5 8.9 92 83-179 268-362 (383)
123 PLN02979 glycolate oxidase 92.3 1.1 2.3E-05 44.6 10.0 96 79-179 234-332 (366)
124 PRK12858 tagatose 1,6-diphosph 92.3 6.1 0.00013 39.0 15.3 116 74-204 47-190 (340)
125 PRK00208 thiG thiazole synthas 92.3 1.8 3.8E-05 40.8 10.8 89 82-179 137-226 (250)
126 TIGR02090 LEU1_arch isopropylm 92.2 4.5 9.8E-05 40.1 14.5 102 79-181 74-184 (363)
127 cd04738 DHOD_2_like Dihydrooro 92.2 0.83 1.8E-05 44.6 9.1 86 73-162 213-314 (327)
128 PLN02591 tryptophan synthase 92.2 11 0.00023 35.7 18.3 180 65-256 5-220 (250)
129 cd02940 DHPD_FMN Dihydropyrimi 92.2 1.7 3.7E-05 41.9 11.2 87 73-162 110-205 (299)
130 PRK08195 4-hyroxy-2-oxovalerat 92.1 3.2 7E-05 40.8 13.2 99 71-173 139-241 (337)
131 cd02922 FCB2_FMN Flavocytochro 92.1 1.4 3.1E-05 43.5 10.7 94 79-179 224-325 (344)
132 PRK11197 lldD L-lactate dehydr 92.1 0.71 1.5E-05 46.2 8.6 92 83-179 260-354 (381)
133 PRK05692 hydroxymethylglutaryl 92.1 2.9 6.3E-05 40.2 12.5 98 81-179 84-196 (287)
134 PRK13753 dihydropteroate synth 92.0 6.2 0.00013 37.9 14.5 120 56-188 4-128 (279)
135 PLN02433 uroporphyrinogen deca 91.9 5.3 0.00011 39.2 14.5 71 78-155 181-258 (345)
136 cd04731 HisF The cyclase subun 91.9 1.4 3.1E-05 40.8 10.0 90 78-174 151-241 (243)
137 PRK09140 2-dehydro-3-deoxy-6-p 91.9 8.4 0.00018 35.2 14.8 164 54-254 7-179 (206)
138 PLN02495 oxidoreductase, actin 91.8 1.8 3.9E-05 43.4 11.0 88 71-161 122-218 (385)
139 PLN02433 uroporphyrinogen deca 91.6 7.2 0.00016 38.3 15.1 70 136-212 178-259 (345)
140 cd07940 DRE_TIM_IPMS 2-isoprop 91.5 5 0.00011 37.9 13.3 116 56-177 125-245 (268)
141 PLN02591 tryptophan synthase 91.5 4.2 9.1E-05 38.4 12.6 35 76-117 93-127 (250)
142 PRK09432 metF 5,10-methylenete 91.4 11 0.00024 36.3 15.9 125 73-205 94-241 (296)
143 PLN02493 probable peroxisomal 91.3 1.6 3.5E-05 43.5 10.0 95 80-179 236-333 (367)
144 PLN02428 lipoic acid synthase 91.3 2.6 5.6E-05 41.8 11.4 77 79-156 195-281 (349)
145 TIGR02660 nifV_homocitr homoci 91.3 4.3 9.4E-05 40.3 13.2 99 80-179 76-183 (365)
146 cd07938 DRE_TIM_HMGL 3-hydroxy 91.2 7.8 0.00017 36.9 14.4 100 70-174 143-252 (274)
147 cd03174 DRE_TIM_metallolyase D 91.2 2.6 5.6E-05 39.2 11.1 45 134-179 143-187 (265)
148 cd02809 alpha_hydroxyacid_oxid 91.2 2.3 5E-05 40.9 10.9 74 74-158 127-201 (299)
149 TIGR03217 4OH_2_O_val_ald 4-hy 91.1 4.6 9.9E-05 39.7 13.0 98 72-173 139-240 (333)
150 PLN02826 dihydroorotate dehydr 91.0 2.2 4.7E-05 43.2 10.9 86 73-162 273-375 (409)
151 TIGR00222 panB 3-methyl-2-oxob 91.0 1.9 4.2E-05 40.9 9.9 88 142-231 27-132 (263)
152 cd07938 DRE_TIM_HMGL 3-hydroxy 90.9 5.1 0.00011 38.2 12.9 99 80-179 77-190 (274)
153 PRK02506 dihydroorotate dehydr 90.9 4.9 0.00011 39.0 12.9 84 104-188 73-166 (310)
154 cd04729 NanE N-acetylmannosami 90.9 12 0.00027 34.0 16.9 183 56-263 8-215 (219)
155 PF00682 HMGL-like: HMGL-like 90.8 2.6 5.6E-05 38.8 10.5 41 138-179 109-149 (237)
156 cd07940 DRE_TIM_IPMS 2-isoprop 90.7 5.3 0.00012 37.7 12.7 44 137-181 114-157 (268)
157 cd02811 IDI-2_FMN Isopentenyl- 90.6 1.8 4E-05 42.3 9.8 96 79-179 192-308 (326)
158 PTZ00413 lipoate synthase; Pro 90.6 3.4 7.3E-05 41.4 11.4 77 79-156 242-329 (398)
159 PRK07565 dihydroorotate dehydr 90.6 2.3 4.9E-05 41.7 10.3 83 74-160 112-200 (334)
160 cd03307 Mta_CmuA_like MtaA_Cmu 90.5 7.8 0.00017 37.6 14.0 94 136-236 170-274 (326)
161 cd04730 NPD_like 2-Nitropropan 90.5 2.4 5.2E-05 38.8 10.0 79 80-164 113-192 (236)
162 CHL00162 thiG thiamin biosynth 90.5 3.5 7.6E-05 38.9 10.8 89 81-178 150-239 (267)
163 PRK00311 panB 3-methyl-2-oxobu 90.4 2.1 4.6E-05 40.7 9.7 102 123-231 14-133 (264)
164 cd04735 OYE_like_4_FMN Old yel 90.4 5.6 0.00012 39.3 13.1 89 72-161 133-259 (353)
165 PRK08999 hypothetical protein; 90.4 11 0.00023 36.3 14.8 48 77-129 145-193 (312)
166 PRK08649 inosine 5-monophospha 90.4 0.88 1.9E-05 45.4 7.3 74 76-157 141-215 (368)
167 COG0167 PyrD Dihydroorotate de 90.3 3.1 6.7E-05 40.5 10.8 100 74-178 171-293 (310)
168 PRK13523 NADPH dehydrogenase N 90.3 3.9 8.5E-05 40.2 11.7 90 72-161 131-251 (337)
169 TIGR00126 deoC deoxyribose-pho 90.3 10 0.00022 34.8 13.7 127 72-217 14-154 (211)
170 COG0042 tRNA-dihydrouridine sy 90.3 9.3 0.0002 37.4 14.3 132 72-212 75-225 (323)
171 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.2 6.8 0.00015 37.3 13.0 100 70-175 143-246 (275)
172 cd04736 MDH_FMN Mandelate dehy 90.2 1.7 3.7E-05 43.2 9.1 91 82-179 250-343 (361)
173 PF03932 CutC: CutC family; I 90.2 0.82 1.8E-05 41.7 6.4 79 58-141 85-189 (201)
174 TIGR00262 trpA tryptophan synt 90.2 14 0.00031 34.8 15.1 20 77-96 103-122 (256)
175 PRK07226 fructose-bisphosphate 90.2 5.5 0.00012 37.7 12.3 65 112-178 186-252 (267)
176 PRK02083 imidazole glycerol ph 90.2 3.4 7.3E-05 38.7 10.8 88 77-175 154-246 (253)
177 PF01702 TGT: Queuine tRNA-rib 90.1 1.7 3.7E-05 40.4 8.7 79 71-159 63-143 (238)
178 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.1 16 0.00034 34.8 15.5 45 135-179 116-161 (275)
179 PRK07226 fructose-bisphosphate 90.1 2.3 5.1E-05 40.2 9.7 85 65-154 84-177 (267)
180 TIGR01037 pyrD_sub1_fam dihydr 90.1 8.5 0.00018 36.8 13.7 77 106-184 74-162 (300)
181 PRK05286 dihydroorotate dehydr 90.1 3.1 6.7E-05 41.0 10.8 89 72-161 153-249 (344)
182 PRK02083 imidazole glycerol ph 90.0 13 0.00027 34.8 14.6 79 78-164 32-110 (253)
183 PRK06015 keto-hydroxyglutarate 89.9 15 0.00033 33.5 15.5 158 73-262 13-179 (201)
184 PRK12858 tagatose 1,6-diphosph 89.9 5.8 0.00013 39.1 12.5 130 56-186 83-248 (340)
185 TIGR00742 yjbN tRNA dihydrouri 89.7 1.7 3.7E-05 42.4 8.7 85 74-164 139-230 (318)
186 PF00682 HMGL-like: HMGL-like 89.7 14 0.0003 33.9 14.4 137 71-218 9-162 (237)
187 PF01207 Dus: Dihydrouridine s 89.7 0.84 1.8E-05 44.3 6.4 83 75-163 137-219 (309)
188 TIGR00007 phosphoribosylformim 89.6 2.1 4.6E-05 39.2 8.9 75 79-161 148-222 (230)
189 PRK12330 oxaloacetate decarbox 89.6 6 0.00013 41.0 12.8 99 72-174 151-253 (499)
190 COG1609 PurR Transcriptional r 89.5 15 0.00032 35.8 15.1 105 74-187 159-274 (333)
191 PRK06806 fructose-bisphosphate 89.5 4 8.7E-05 39.1 10.8 42 81-127 89-131 (281)
192 PRK11858 aksA trans-homoaconit 89.4 3.2 6.8E-05 41.5 10.5 111 56-174 127-241 (378)
193 TIGR01182 eda Entner-Doudoroff 89.4 17 0.00036 33.3 16.7 167 56-261 7-182 (204)
194 TIGR03151 enACPred_II putative 89.3 5.8 0.00013 38.5 11.9 88 78-184 76-166 (307)
195 PRK01130 N-acetylmannosamine-6 89.3 5 0.00011 36.6 11.0 111 79-206 78-194 (221)
196 cd07941 DRE_TIM_LeuA3 Desulfob 89.3 3.6 7.8E-05 39.1 10.3 98 71-173 146-247 (273)
197 cd00537 MTHFR Methylenetetrahy 89.2 20 0.00043 33.9 15.6 109 73-185 70-194 (274)
198 PRK14041 oxaloacetate decarbox 89.2 7.1 0.00015 40.2 12.9 96 72-173 149-248 (467)
199 PRK08318 dihydropyrimidine deh 89.1 3.6 7.9E-05 41.5 10.8 175 71-268 108-298 (420)
200 COG1850 RbcL Ribulose 1,5-bisp 89.1 5.1 0.00011 40.0 11.2 172 25-204 115-304 (429)
201 PRK09389 (R)-citramalate synth 89.0 9.9 0.00021 39.4 14.0 105 79-184 76-191 (488)
202 PRK01033 imidazole glycerol ph 89.0 3.9 8.4E-05 38.5 10.3 78 79-163 155-232 (258)
203 TIGR03849 arch_ComA phosphosul 89.0 3.6 7.8E-05 38.5 9.7 77 76-158 71-155 (237)
204 TIGR00737 nifR3_yhdG putative 89.0 2.1 4.6E-05 41.6 8.7 82 77-164 148-229 (319)
205 PRK08255 salicylyl-CoA 5-hydro 89.0 7.6 0.00017 42.4 13.9 88 72-160 540-661 (765)
206 COG0167 PyrD Dihydroorotate de 89.0 3.6 7.9E-05 40.0 10.1 85 73-160 106-196 (310)
207 PRK00112 tgt queuine tRNA-ribo 88.9 3.2 6.9E-05 41.4 10.0 81 70-160 189-271 (366)
208 TIGR02660 nifV_homocitr homoci 88.9 3.8 8.2E-05 40.7 10.6 110 56-173 124-237 (365)
209 PRK06252 methylcobalamin:coenz 88.9 2.9 6.4E-05 40.7 9.7 74 78-156 182-259 (339)
210 cd02931 ER_like_FMN Enoate red 88.9 16 0.00034 36.5 15.1 128 72-205 139-325 (382)
211 TIGR01036 pyrD_sub2 dihydrooro 88.8 1 2.2E-05 44.2 6.4 85 74-162 222-322 (335)
212 cd06557 KPHMT-like Ketopantoat 88.8 3.8 8.1E-05 38.8 9.9 96 127-229 15-128 (254)
213 PLN02424 ketopantoate hydroxym 88.7 3.6 7.8E-05 40.3 9.9 76 141-217 46-136 (332)
214 PRK08645 bifunctional homocyst 88.7 17 0.00036 38.8 15.9 131 72-206 392-556 (612)
215 cd00381 IMPDH IMPDH: The catal 88.7 20 0.00044 35.0 15.4 159 80-263 49-235 (325)
216 TIGR00126 deoC deoxyribose-pho 88.6 20 0.00043 33.0 16.0 101 59-160 54-155 (211)
217 PRK10415 tRNA-dihydrouridine s 88.6 3 6.5E-05 40.7 9.5 83 76-164 149-231 (321)
218 cd04724 Tryptophan_synthase_al 88.5 21 0.00046 33.2 22.0 132 66-210 4-156 (242)
219 cd07943 DRE_TIM_HOA 4-hydroxy- 88.4 9.5 0.00021 35.9 12.5 91 80-179 89-182 (263)
220 PLN02489 homocysteine S-methyl 88.4 22 0.00048 34.9 15.5 116 59-188 134-276 (335)
221 TIGR03151 enACPred_II putative 88.4 4.1 8.9E-05 39.5 10.2 118 80-205 120-241 (307)
222 PRK08185 hypothetical protein; 88.4 6.9 0.00015 37.6 11.5 113 82-206 84-220 (283)
223 PRK00915 2-isopropylmalate syn 88.3 17 0.00037 37.8 15.4 103 76-179 79-190 (513)
224 TIGR00736 nifR3_rel_arch TIM-b 88.3 2.5 5.4E-05 39.4 8.2 76 77-161 149-224 (231)
225 PF05690 ThiG: Thiazole biosyn 88.3 2 4.2E-05 40.1 7.4 90 80-178 135-225 (247)
226 cd00019 AP2Ec AP endonuclease 88.2 22 0.00048 33.3 15.0 137 76-214 10-176 (279)
227 PRK12331 oxaloacetate decarbox 88.2 8.9 0.00019 39.3 12.9 96 72-173 150-249 (448)
228 cd04730 NPD_like 2-Nitropropan 88.1 5.6 0.00012 36.4 10.5 104 76-205 67-176 (236)
229 TIGR01302 IMP_dehydrog inosine 88.0 9.6 0.00021 39.0 13.1 143 79-237 226-385 (450)
230 PRK00115 hemE uroporphyrinogen 88.0 17 0.00038 35.5 14.5 94 136-236 185-290 (346)
231 COG0413 PanB Ketopantoate hydr 88.0 5.1 0.00011 37.9 10.0 86 59-156 77-180 (268)
232 PRK05437 isopentenyl pyrophosp 87.9 3.2 7E-05 41.1 9.3 95 79-179 200-315 (352)
233 cd01302 Cyclic_amidohydrolases 87.9 3.1 6.8E-05 40.6 9.1 98 84-191 89-204 (337)
234 TIGR02151 IPP_isom_2 isopenten 87.9 2.4 5.1E-05 41.6 8.3 97 79-179 193-308 (333)
235 COG0159 TrpA Tryptophan syntha 87.9 4.5 9.7E-05 38.5 9.7 56 96-159 180-235 (265)
236 TIGR00343 pyridoxal 5'-phospha 87.9 2.5 5.5E-05 40.5 8.1 86 112-216 187-275 (287)
237 PRK13111 trpA tryptophan synth 87.8 11 0.00024 35.6 12.5 99 77-218 105-213 (258)
238 PF01791 DeoC: DeoC/LacD famil 87.8 9.3 0.0002 35.3 11.8 116 61-179 57-187 (236)
239 cd01295 AdeC Adenine deaminase 87.7 2.7 5.9E-05 42.4 8.8 74 141-215 27-110 (422)
240 PLN02321 2-isopropylmalate syn 87.6 3.6 7.8E-05 43.9 9.9 102 70-174 234-340 (632)
241 TIGR02090 LEU1_arch isopropylm 87.5 4.1 8.8E-05 40.5 9.8 112 56-175 123-238 (363)
242 TIGR01036 pyrD_sub2 dihydrooro 87.4 5.1 0.00011 39.4 10.3 87 74-161 152-248 (335)
243 PF01070 FMN_dh: FMN-dependent 87.4 1.8 3.8E-05 43.0 7.1 93 82-179 239-334 (356)
244 cd04732 HisA HisA. Phosphorib 87.3 3 6.5E-05 38.2 8.2 77 78-162 148-224 (234)
245 PRK11572 copper homeostasis pr 87.3 9.2 0.0002 36.1 11.4 90 54-157 85-198 (248)
246 COG0826 Collagenase and relate 87.2 4.3 9.4E-05 40.2 9.6 78 82-160 19-102 (347)
247 COG2022 ThiG Uncharacterized e 87.2 2.6 5.7E-05 39.2 7.5 85 81-176 143-230 (262)
248 PF13407 Peripla_BP_4: Peripla 87.2 2.8 6E-05 38.3 7.9 73 110-188 16-89 (257)
249 cd02801 DUS_like_FMN Dihydrour 87.1 2.1 4.5E-05 39.1 7.0 83 76-164 138-220 (231)
250 PRK10550 tRNA-dihydrouridine s 87.0 2.8 6.1E-05 40.8 8.1 82 77-164 149-231 (312)
251 PLN02321 2-isopropylmalate syn 87.0 29 0.00062 37.2 16.2 43 72-120 104-146 (632)
252 PRK13397 3-deoxy-7-phosphohept 87.0 3.6 7.9E-05 38.8 8.6 83 72-157 132-219 (250)
253 TIGR01304 IMP_DH_rel_2 IMP deh 86.9 1.7 3.7E-05 43.3 6.7 73 76-156 142-215 (369)
254 TIGR01949 AroFGH_arch predicte 86.9 6.4 0.00014 37.0 10.4 93 58-156 72-175 (258)
255 cd04722 TIM_phosphate_binding 86.8 7.7 0.00017 33.4 10.3 108 76-188 12-123 (200)
256 COG2159 Predicted metal-depend 86.8 19 0.00041 34.7 13.6 134 82-217 55-201 (293)
257 PLN03228 methylthioalkylmalate 86.8 30 0.00066 36.0 15.9 138 72-218 102-264 (503)
258 PRK07094 biotin synthase; Prov 86.7 31 0.00067 33.2 15.5 185 72-268 69-291 (323)
259 cd07945 DRE_TIM_CMS Leptospira 86.7 11 0.00024 36.1 11.9 97 72-173 143-243 (280)
260 PF07302 AroM: AroM protein; 86.7 23 0.00049 32.8 13.4 139 61-208 53-205 (221)
261 TIGR00640 acid_CoA_mut_C methy 86.6 10 0.00023 32.0 10.5 85 78-176 42-126 (132)
262 TIGR00977 LeuA_rel 2-isopropyl 86.6 10 0.00022 39.7 12.4 102 79-181 84-197 (526)
263 CHL00200 trpA tryptophan synth 86.6 19 0.00041 34.2 13.3 25 136-160 130-154 (263)
264 PF01261 AP_endonuc_2: Xylose 86.5 14 0.0003 32.3 11.9 132 83-218 2-167 (213)
265 cd00331 IGPS Indole-3-glycerol 86.4 6.6 0.00014 35.7 9.9 78 82-167 134-211 (217)
266 PRK07028 bifunctional hexulose 86.3 2.7 5.9E-05 42.6 8.0 106 81-205 73-181 (430)
267 TIGR03572 WbuZ glycosyl amidat 86.3 5.9 0.00013 36.4 9.6 60 137-202 153-214 (232)
268 cd04729 NanE N-acetylmannosami 86.2 9.2 0.0002 34.8 10.8 112 78-206 81-198 (219)
269 TIGR00742 yjbN tRNA dihydrouri 86.2 31 0.00067 33.7 14.9 86 72-159 63-163 (318)
270 PRK11815 tRNA-dihydrouridine s 86.1 4.1 8.8E-05 40.0 8.8 85 74-164 149-240 (333)
271 TIGR01163 rpe ribulose-phospha 86.1 24 0.00053 31.4 19.0 168 72-258 7-197 (210)
272 TIGR03572 WbuZ glycosyl amidat 86.0 4.7 0.0001 37.0 8.8 74 79-159 156-229 (232)
273 PLN02746 hydroxymethylglutaryl 86.0 7.2 0.00016 38.6 10.5 84 70-158 191-274 (347)
274 PLN02979 glycolate oxidase 86.0 31 0.00067 34.4 14.8 73 74-158 132-252 (366)
275 cd04722 TIM_phosphate_binding 86.0 7.9 0.00017 33.4 9.8 110 82-206 77-191 (200)
276 cd06556 ICL_KPHMT Members of t 85.9 9.4 0.0002 35.8 10.7 89 87-183 30-129 (240)
277 cd04747 OYE_like_5_FMN Old yel 85.8 8.4 0.00018 38.3 10.9 88 72-159 133-257 (361)
278 PRK12344 putative alpha-isopro 85.7 14 0.00031 38.5 13.1 104 81-185 90-207 (524)
279 cd07944 DRE_TIM_HOA_like 4-hyd 85.6 28 0.00061 32.9 14.0 137 71-218 15-163 (266)
280 cd04741 DHOD_1A_like Dihydroor 85.6 29 0.00063 33.3 14.3 81 107-188 73-166 (294)
281 PRK13361 molybdenum cofactor b 85.6 6.1 0.00013 38.5 9.8 101 70-179 42-152 (329)
282 PRK14042 pyruvate carboxylase 85.6 14 0.00031 39.2 13.0 98 55-158 133-230 (596)
283 PRK09490 metH B12-dependent me 85.5 22 0.00049 40.9 15.2 144 58-211 130-311 (1229)
284 TIGR00735 hisF imidazoleglycer 85.4 7.3 0.00016 36.5 9.9 89 78-174 157-247 (254)
285 cd07948 DRE_TIM_HCS Saccharomy 85.3 7.7 0.00017 36.7 10.0 95 73-173 138-236 (262)
286 TIGR03822 AblA_like_2 lysine-2 85.2 39 0.00084 32.9 15.3 128 71-204 117-251 (321)
287 TIGR00736 nifR3_rel_arch TIM-b 85.1 24 0.00052 32.9 12.9 83 71-157 75-168 (231)
288 cd04738 DHOD_2_like Dihydrooro 84.8 41 0.00088 32.8 17.6 126 80-215 63-236 (327)
289 cd00377 ICL_PEPM Members of th 84.7 19 0.00042 33.6 12.3 91 87-179 27-136 (243)
290 PF04131 NanE: Putative N-acet 84.6 23 0.00049 32.1 12.0 126 72-216 47-178 (192)
291 PRK00748 1-(5-phosphoribosyl)- 84.6 12 0.00027 34.1 10.9 69 138-213 147-218 (233)
292 cd02932 OYE_YqiM_FMN Old yello 84.5 42 0.00091 32.7 15.3 83 40-133 7-99 (336)
293 TIGR00430 Q_tRNA_tgt tRNA-guan 84.4 8.2 0.00018 38.5 10.1 82 70-161 185-268 (368)
294 COG5016 Pyruvate/oxaloacetate 84.3 9.7 0.00021 38.3 10.3 94 57-161 142-236 (472)
295 PRK08195 4-hyroxy-2-oxovalerat 84.3 16 0.00034 36.0 12.0 46 133-179 140-185 (337)
296 PRK10481 hypothetical protein; 84.2 34 0.00074 31.7 13.5 121 61-187 56-190 (224)
297 PRK14040 oxaloacetate decarbox 84.2 20 0.00043 38.1 13.4 80 74-159 153-232 (593)
298 TIGR00973 leuA_bact 2-isopropy 84.2 7.2 0.00015 40.5 9.9 103 70-175 140-247 (494)
299 PF00977 His_biosynth: Histidi 84.1 8.5 0.00018 35.6 9.5 73 78-158 149-221 (229)
300 cd04726 KGPDC_HPS 3-Keto-L-gul 84.0 23 0.00049 31.5 12.1 108 80-206 68-178 (202)
301 PRK04180 pyridoxal biosynthesi 84.0 7.2 0.00016 37.5 9.0 96 102-216 173-281 (293)
302 PRK12331 oxaloacetate decarbox 83.8 31 0.00067 35.4 14.2 135 72-218 22-179 (448)
303 COG1908 FrhD Coenzyme F420-red 83.8 11 0.00023 31.6 8.8 93 54-152 24-127 (132)
304 TIGR03128 RuMP_HxlA 3-hexulose 83.8 20 0.00044 32.1 11.7 111 81-206 68-178 (206)
305 PLN03228 methylthioalkylmalate 83.8 7.8 0.00017 40.3 9.9 101 70-174 233-339 (503)
306 TIGR00587 nfo apurinic endonuc 83.8 40 0.00086 31.9 15.2 128 77-205 12-164 (274)
307 PRK10605 N-ethylmaleimide redu 83.8 21 0.00045 35.5 12.7 131 72-212 148-320 (362)
308 PF02548 Pantoate_transf: Keto 83.7 6 0.00013 37.5 8.3 63 59-133 78-140 (261)
309 TIGR00449 tgt_general tRNA-gua 83.6 8.6 0.00019 38.3 9.9 80 71-160 185-266 (367)
310 cd01575 PBP1_GntR Ligand-bindi 83.6 31 0.00066 31.2 13.1 131 74-216 40-185 (268)
311 PRK13585 1-(5-phosphoribosyl)- 83.5 5.7 0.00012 36.7 8.2 86 79-172 152-238 (241)
312 COG4981 Enoyl reductase domain 83.5 22 0.00047 37.3 12.6 144 59-213 37-218 (717)
313 PLN02535 glycolate oxidase 83.5 41 0.00088 33.6 14.5 75 73-159 134-253 (364)
314 TIGR02082 metH 5-methyltetrahy 83.5 78 0.0017 36.6 18.4 134 58-204 114-282 (1178)
315 cd00739 DHPS DHPS subgroup of 83.5 12 0.00025 35.5 10.3 94 57-157 4-103 (257)
316 PRK04302 triosephosphate isome 83.4 25 0.00055 32.2 12.4 65 82-158 78-142 (223)
317 COG0646 MetH Methionine syntha 83.4 27 0.0006 33.8 12.6 114 76-202 143-277 (311)
318 PRK10528 multifunctional acyl- 83.2 22 0.00048 31.4 11.6 82 93-179 46-140 (191)
319 PRK06252 methylcobalamin:coenz 83.2 37 0.0008 32.9 14.1 71 109-179 122-228 (339)
320 PLN02493 probable peroxisomal 83.2 48 0.001 33.1 14.8 73 74-158 133-253 (367)
321 cd06267 PBP1_LacI_sugar_bindin 83.2 4.7 0.0001 36.2 7.4 131 73-215 39-184 (264)
322 PRK08446 coproporphyrinogen II 83.0 27 0.00059 34.3 13.2 113 75-191 33-163 (350)
323 cd03465 URO-D_like The URO-D _ 82.9 46 0.00099 31.9 14.7 51 136-186 167-228 (330)
324 PRK11840 bifunctional sulfur c 82.9 15 0.00033 36.0 10.9 88 82-178 211-299 (326)
325 TIGR00693 thiE thiamine-phosph 82.8 29 0.00062 30.7 12.2 67 76-157 13-80 (196)
326 TIGR03217 4OH_2_O_val_ald 4-hy 82.8 46 0.00099 32.7 14.5 15 254-268 227-241 (333)
327 PRK00915 2-isopropylmalate syn 82.7 9.1 0.0002 39.9 10.1 114 56-175 131-250 (513)
328 PRK01060 endonuclease IV; Prov 82.7 42 0.00091 31.4 16.2 126 78-204 14-165 (281)
329 PRK06843 inosine 5-monophospha 82.6 23 0.00049 35.9 12.5 142 78-237 154-314 (404)
330 PRK11572 copper homeostasis pr 82.6 6.2 0.00013 37.2 7.9 130 61-204 55-188 (248)
331 PRK08227 autoinducer 2 aldolas 82.6 33 0.00072 32.6 12.9 63 114-178 184-247 (264)
332 PRK00748 1-(5-phosphoribosyl)- 82.4 7.1 0.00015 35.7 8.3 75 79-161 149-224 (233)
333 PRK09282 pyruvate carboxylase 82.4 22 0.00047 37.9 12.8 81 72-158 150-230 (592)
334 TIGR01108 oadA oxaloacetate de 82.4 20 0.00043 38.0 12.5 82 72-159 145-226 (582)
335 TIGR02708 L_lactate_ox L-lacta 82.4 56 0.0012 32.6 15.7 73 74-158 144-257 (367)
336 cd00717 URO-D Uroporphyrinogen 82.4 50 0.0011 32.0 15.0 71 136-212 176-257 (335)
337 cd02803 OYE_like_FMN_family Ol 82.4 8.8 0.00019 37.1 9.3 87 71-164 223-318 (327)
338 TIGR01163 rpe ribulose-phospha 82.3 10 0.00022 33.9 9.1 75 88-170 125-206 (210)
339 PLN02540 methylenetetrahydrofo 82.3 34 0.00074 36.1 14.0 130 73-206 70-235 (565)
340 KOG2335 tRNA-dihydrouridine sy 82.3 6.8 0.00015 38.7 8.3 82 73-158 152-234 (358)
341 PRK09389 (R)-citramalate synth 82.2 11 0.00024 39.0 10.4 104 64-174 132-239 (488)
342 PRK09250 fructose-bisphosphate 82.2 11 0.00024 37.3 9.7 103 75-178 216-338 (348)
343 TIGR01859 fruc_bis_ald_ fructo 82.2 19 0.00042 34.5 11.4 128 73-212 81-227 (282)
344 cd00717 URO-D Uroporphyrinogen 82.1 38 0.00082 32.9 13.7 73 78-157 179-258 (335)
345 PRK05660 HemN family oxidoredu 82.0 25 0.00053 35.1 12.5 100 88-191 57-172 (378)
346 PRK12677 xylose isomerase; Pro 82.0 55 0.0012 32.8 15.0 140 78-217 33-216 (384)
347 TIGR01303 IMP_DH_rel_1 IMP deh 81.8 23 0.0005 36.6 12.5 143 78-237 226-387 (475)
348 PRK13111 trpA tryptophan synth 81.7 48 0.001 31.3 20.9 176 67-256 17-230 (258)
349 TIGR02637 RhaS rhamnose ABC tr 81.5 20 0.00043 33.7 11.2 54 130-188 36-90 (302)
350 PF03060 NMO: Nitronate monoox 81.4 5.1 0.00011 39.2 7.3 119 80-205 147-270 (330)
351 TIGR00977 LeuA_rel 2-isopropyl 81.4 9.5 0.00021 39.9 9.6 86 71-161 149-234 (526)
352 PRK13585 1-(5-phosphoribosyl)- 81.3 7.1 0.00015 36.0 7.9 83 64-158 76-170 (241)
353 PLN02495 oxidoreductase, actin 81.3 29 0.00062 34.9 12.6 83 107-190 97-193 (385)
354 smart00518 AP2Ec AP endonuclea 81.3 46 0.001 30.9 16.3 124 78-204 12-159 (273)
355 TIGR01496 DHPS dihydropteroate 81.2 17 0.00037 34.3 10.5 117 57-187 3-126 (257)
356 PF02219 MTHFR: Methylenetetra 81.1 30 0.00065 33.0 12.3 110 73-188 82-209 (287)
357 PRK12581 oxaloacetate decarbox 81.1 27 0.00058 36.0 12.5 97 72-174 159-259 (468)
358 PRK02412 aroD 3-dehydroquinate 81.1 48 0.001 31.1 13.5 20 135-154 150-169 (253)
359 PRK09875 putative hydrolase; P 80.6 57 0.0012 31.5 15.6 76 105-187 133-210 (292)
360 cd04743 NPD_PKS 2-Nitropropane 80.6 17 0.00037 35.5 10.5 115 80-204 114-254 (320)
361 PRK07998 gatY putative fructos 80.5 15 0.00032 35.4 9.9 124 73-206 81-221 (283)
362 PRK09492 treR trehalose repres 80.5 51 0.0011 30.9 14.3 80 75-157 160-239 (315)
363 TIGR00510 lipA lipoate synthas 80.4 14 0.00029 35.9 9.7 77 134-214 188-277 (302)
364 PRK07107 inosine 5-monophospha 80.4 9.3 0.0002 39.7 9.1 113 77-204 242-372 (502)
365 TIGR03821 AblA_like_1 lysine-2 80.4 57 0.0012 31.8 14.2 128 72-205 124-258 (321)
366 PF00290 Trp_syntA: Tryptophan 80.4 54 0.0012 31.1 19.0 178 66-256 14-228 (259)
367 PRK15452 putative protease; Pr 80.3 12 0.00027 38.2 9.9 85 82-177 16-108 (443)
368 TIGR02151 IPP_isom_2 isopenten 80.3 62 0.0013 31.7 14.7 136 60-205 54-201 (333)
369 cd02911 arch_FMN Archeal FMN-b 80.2 24 0.00051 32.8 11.0 80 73-156 82-171 (233)
370 cd04731 HisF The cyclase subun 79.9 15 0.00033 33.9 9.7 78 77-162 28-105 (243)
371 KOG0538 Glycolate oxidase [Ene 79.7 7.9 0.00017 37.6 7.6 84 83-173 238-326 (363)
372 PF01884 PcrB: PcrB family; I 79.5 4.1 8.9E-05 38.0 5.6 175 56-256 6-213 (230)
373 cd02933 OYE_like_FMN Old yello 79.5 11 0.00024 37.0 9.0 132 14-164 182-321 (338)
374 PRK06498 isocitrate lyase; Pro 79.5 62 0.0014 33.5 14.2 116 71-189 188-384 (531)
375 PRK01033 imidazole glycerol ph 79.5 20 0.00044 33.7 10.4 125 64-212 74-223 (258)
376 PF01487 DHquinase_I: Type I 3 79.5 13 0.00029 33.9 9.0 104 72-188 71-183 (224)
377 TIGR01305 GMP_reduct_1 guanosi 79.5 13 0.00028 36.6 9.2 71 82-157 164-241 (343)
378 PTZ00314 inosine-5'-monophosph 79.4 24 0.00052 36.6 11.8 67 79-156 243-309 (495)
379 TIGR01108 oadA oxaloacetate de 79.1 33 0.00072 36.4 12.9 100 76-185 91-198 (582)
380 PRK12344 putative alpha-isopro 79.1 16 0.00036 38.1 10.5 97 71-173 153-253 (524)
381 TIGR01464 hemE uroporphyrinoge 79.1 65 0.0014 31.3 15.0 44 136-179 179-226 (338)
382 PRK02261 methylaspartate mutas 79.1 39 0.00084 28.7 11.2 91 78-177 43-134 (137)
383 PRK09195 gatY tagatose-bisphos 79.0 31 0.00067 33.2 11.6 121 73-206 81-224 (284)
384 PRK02615 thiamine-phosphate py 79.0 23 0.0005 35.1 10.9 99 82-205 210-313 (347)
385 PRK00115 hemE uroporphyrinogen 78.7 33 0.00072 33.5 12.1 72 78-156 188-266 (346)
386 PRK11815 tRNA-dihydrouridine s 78.7 26 0.00057 34.3 11.3 84 73-158 74-172 (333)
387 PRK07114 keto-hydroxyglutarate 78.7 13 0.00029 34.4 8.7 170 55-260 13-193 (222)
388 smart00729 Elp3 Elongator prot 78.4 24 0.00053 30.5 10.1 45 135-179 134-179 (216)
389 PRK07709 fructose-bisphosphate 78.4 38 0.00082 32.6 12.0 121 73-206 84-225 (285)
390 TIGR03128 RuMP_HxlA 3-hexulose 78.3 31 0.00066 30.9 10.9 100 59-176 105-205 (206)
391 cd06287 PBP1_LacI_like_8 Ligan 78.2 57 0.0012 30.2 15.6 82 74-157 102-185 (269)
392 PRK05458 guanosine 5'-monophos 78.2 10 0.00022 37.2 8.1 66 80-157 100-168 (326)
393 cd00452 KDPG_aldolase KDPG and 78.2 49 0.0011 29.4 16.3 151 74-255 14-172 (190)
394 TIGR00735 hisF imidazoleglycer 78.0 15 0.00033 34.3 9.1 78 78-163 32-109 (254)
395 TIGR01235 pyruv_carbox pyruvat 78.0 21 0.00045 41.0 11.6 99 72-176 685-784 (1143)
396 COG1902 NemA NADH:flavin oxido 78.0 51 0.0011 32.8 13.1 135 72-212 138-317 (363)
397 cd00740 MeTr MeTr subgroup of 77.9 62 0.0014 30.4 14.1 105 72-187 22-127 (252)
398 PRK13475 ribulose bisphosphate 77.9 51 0.0011 33.8 13.3 128 28-157 118-263 (443)
399 PLN02274 inosine-5'-monophosph 77.9 25 0.00053 36.7 11.3 142 79-237 250-409 (505)
400 PRK14041 oxaloacetate decarbox 77.9 36 0.00079 35.1 12.4 102 75-186 94-203 (467)
401 PF02679 ComA: (2R)-phospho-3- 77.9 8.4 0.00018 36.2 7.1 78 76-159 84-169 (244)
402 COG1879 RbsB ABC-type sugar tr 77.7 18 0.00038 34.6 9.7 91 91-189 35-126 (322)
403 cd02922 FCB2_FMN Flavocytochro 77.7 18 0.00038 35.8 9.7 73 74-158 129-242 (344)
404 cd06291 PBP1_Qymf_like Ligand 77.7 54 0.0012 29.7 12.6 126 74-216 40-181 (265)
405 PF01068 DNA_ligase_A_M: ATP d 77.5 7.5 0.00016 34.6 6.6 58 102-159 128-185 (202)
406 cd07942 DRE_TIM_LeuA Mycobacte 77.3 18 0.00039 34.7 9.5 109 62-174 140-262 (284)
407 cd01391 Periplasmic_Binding_Pr 77.3 33 0.00071 30.1 10.8 96 73-180 42-152 (269)
408 PLN02826 dihydroorotate dehydr 77.1 27 0.00059 35.4 11.1 90 74-164 202-303 (409)
409 COG1830 FbaB DhnA-type fructos 77.1 42 0.00092 31.9 11.6 106 60-177 146-257 (265)
410 cd03465 URO-D_like The URO-D _ 76.9 21 0.00047 34.2 10.1 75 78-156 170-249 (330)
411 PRK09240 thiH thiamine biosynt 76.9 23 0.00049 35.3 10.4 79 71-158 102-181 (371)
412 cd07947 DRE_TIM_Re_CS Clostrid 76.8 36 0.00078 32.6 11.3 50 82-131 80-135 (279)
413 COG0274 DeoC Deoxyribose-phosp 76.7 47 0.001 30.9 11.5 129 59-218 61-192 (228)
414 PRK13533 7-cyano-7-deazaguanin 76.7 16 0.00035 37.8 9.5 83 70-159 165-249 (487)
415 PRK00278 trpC indole-3-glycero 76.6 7.6 0.00016 36.7 6.6 85 122-216 47-143 (260)
416 PRK00208 thiG thiazole synthas 76.5 69 0.0015 30.2 14.6 177 76-267 21-220 (250)
417 cd02930 DCR_FMN 2,4-dienoyl-Co 76.5 19 0.00042 35.4 9.7 107 41-158 8-158 (353)
418 PRK13125 trpA tryptophan synth 76.5 65 0.0014 29.9 24.8 179 66-256 8-216 (244)
419 PRK11613 folP dihydropteroate 76.5 25 0.00054 33.8 10.1 120 56-187 17-141 (282)
420 PRK00164 moaA molybdenum cofac 76.4 23 0.00051 34.2 10.2 104 68-179 44-156 (331)
421 cd02072 Glm_B12_BD B12 binding 76.4 35 0.00077 28.8 9.9 74 78-155 39-113 (128)
422 cd04727 pdxS PdxS is a subunit 76.3 25 0.00053 33.8 9.8 63 112-179 184-247 (283)
423 cd04742 NPD_FabD 2-Nitropropan 76.2 14 0.0003 37.5 8.7 88 83-178 170-268 (418)
424 cd06303 PBP1_LuxPQ_Quorum_Sens 76.1 65 0.0014 29.7 14.5 91 56-157 28-137 (280)
425 CHL00162 thiG thiamin biosynth 76.1 53 0.0012 31.2 11.8 170 76-258 27-222 (267)
426 PRK09058 coproporphyrinogen II 76.1 44 0.00096 34.1 12.5 99 89-191 114-228 (449)
427 TIGR02814 pfaD_fam PfaD family 76.1 14 0.0003 37.9 8.6 91 79-177 157-272 (444)
428 PF01081 Aldolase: KDPG and KH 76.1 12 0.00026 34.0 7.5 158 73-262 17-183 (196)
429 PRK12738 kbaY tagatose-bisphos 75.9 35 0.00075 32.9 10.9 124 73-206 81-224 (286)
430 TIGR02634 xylF D-xylose ABC tr 75.7 29 0.00062 32.8 10.5 78 106-188 9-88 (302)
431 cd03309 CmuC_like CmuC_like. P 75.7 21 0.00045 34.9 9.5 76 78-157 157-241 (321)
432 cd06289 PBP1_MalI_like Ligand- 75.7 61 0.0013 29.2 13.1 132 73-217 39-187 (268)
433 PRK04302 triosephosphate isome 75.7 40 0.00087 30.8 11.1 64 105-173 155-218 (223)
434 PRK08508 biotin synthase; Prov 75.6 27 0.00058 33.3 10.2 101 74-179 73-178 (279)
435 COG2070 Dioxygenases related t 75.6 5.8 0.00013 39.1 5.7 117 78-204 136-263 (336)
436 PF02581 TMP-TENI: Thiamine mo 75.5 15 0.00033 32.4 7.9 98 83-205 66-168 (180)
437 TIGR01302 IMP_dehydrog inosine 75.5 15 0.00033 37.5 9.0 71 82-159 279-358 (450)
438 cd00429 RPE Ribulose-5-phospha 75.5 58 0.0013 28.8 18.0 168 72-258 8-198 (211)
439 PRK07028 bifunctional hexulose 75.5 46 0.001 33.7 12.4 111 82-206 124-236 (430)
440 COG0159 TrpA Tryptophan syntha 75.5 77 0.0017 30.2 22.7 179 70-270 25-243 (265)
441 PRK05567 inosine 5'-monophosph 75.4 13 0.00029 38.4 8.5 72 82-160 283-363 (486)
442 TIGR00973 leuA_bact 2-isopropy 75.4 33 0.00071 35.7 11.4 50 142-193 122-171 (494)
443 PRK05458 guanosine 5'-monophos 75.3 19 0.00041 35.4 9.1 76 79-161 151-234 (326)
444 cd06320 PBP1_allose_binding Pe 75.3 39 0.00084 30.9 11.0 51 133-188 40-91 (275)
445 TIGR03551 F420_cofH 7,8-dideme 75.2 15 0.00033 36.0 8.6 110 72-186 99-234 (343)
446 TIGR01463 mtaA_cmuA methyltran 75.1 29 0.00063 33.7 10.5 74 78-155 182-260 (340)
447 TIGR02631 xylA_Arthro xylose i 74.9 96 0.0021 31.1 16.2 152 66-218 23-218 (382)
448 TIGR00521 coaBC_dfp phosphopan 74.8 63 0.0014 32.5 13.0 146 72-218 125-327 (390)
449 PLN02274 inosine-5'-monophosph 74.7 8.7 0.00019 40.0 7.0 71 82-161 303-384 (505)
450 PRK05437 isopentenyl pyrophosp 74.7 92 0.002 30.8 14.5 137 60-206 61-209 (352)
451 COG1737 RpiR Transcriptional r 74.7 20 0.00043 34.2 9.0 89 71-163 113-217 (281)
452 PRK13404 dihydropyrimidinase; 74.7 23 0.0005 36.4 10.0 52 77-132 136-187 (477)
453 TIGR00238 KamA family protein. 74.6 89 0.0019 30.6 14.3 127 75-205 144-275 (331)
454 TIGR01306 GMP_reduct_2 guanosi 74.6 18 0.00038 35.5 8.7 75 78-161 147-231 (321)
455 TIGR01501 MthylAspMutase methy 74.6 53 0.0011 28.0 11.6 91 78-177 41-132 (134)
456 PRK00278 trpC indole-3-glycero 74.6 19 0.00041 34.0 8.7 159 78-258 72-244 (260)
457 TIGR01463 mtaA_cmuA methyltran 74.4 87 0.0019 30.4 14.1 44 136-179 179-228 (340)
458 cd04732 HisA HisA. Phosphorib 74.4 14 0.0003 33.7 7.7 74 79-161 32-106 (234)
459 COG0119 LeuA Isopropylmalate/h 74.3 54 0.0012 33.3 12.3 107 77-184 77-194 (409)
460 cd02067 B12-binding B12 bindin 74.3 34 0.00074 27.7 9.3 68 79-155 40-107 (119)
461 TIGR00259 thylakoid_BtpA membr 74.1 47 0.001 31.5 11.2 86 78-176 159-252 (257)
462 cd04735 OYE_like_4_FMN Old yel 74.0 8.1 0.00017 38.2 6.3 138 16-164 177-320 (353)
463 TIGR00538 hemN oxygen-independ 74.0 50 0.0011 33.7 12.3 111 76-190 84-215 (455)
464 PRK09485 mmuM homocysteine met 73.9 88 0.0019 30.2 14.2 102 72-187 132-248 (304)
465 cd00502 DHQase_I Type I 3-dehy 73.8 72 0.0016 29.1 13.2 106 72-188 72-183 (225)
466 PRK15447 putative protease; Pr 73.8 29 0.00063 33.5 10.0 84 78-175 17-105 (301)
467 TIGR01858 tag_bisphos_ald clas 73.6 37 0.0008 32.7 10.4 124 73-206 79-222 (282)
468 COG0343 Tgt Queuine/archaeosin 73.3 14 0.0003 36.8 7.6 80 70-159 184-265 (372)
469 PRK14828 undecaprenyl pyrophos 73.2 32 0.0007 32.6 9.8 103 75-179 57-168 (256)
470 PF13353 Fer4_12: 4Fe-4S singl 73.1 11 0.00023 31.2 6.1 85 69-161 32-120 (139)
471 PRK08883 ribulose-phosphate 3- 73.0 77 0.0017 29.1 15.1 162 72-256 8-197 (220)
472 PTZ00314 inosine-5'-monophosph 72.9 55 0.0012 34.0 12.3 170 79-262 181-381 (495)
473 cd07896 Adenylation_kDNA_ligas 72.9 15 0.00033 32.1 7.2 57 103-159 100-157 (174)
474 COG0042 tRNA-dihydrouridine sy 72.9 17 0.00038 35.5 8.2 82 79-165 155-236 (323)
475 PRK08649 inosine 5-monophospha 72.8 1.1E+02 0.0023 30.7 13.9 79 124-215 131-215 (368)
476 cd06321 PBP1_ABC_sugar_binding 72.6 54 0.0012 29.9 11.2 60 124-188 31-91 (271)
477 cd06292 PBP1_LacI_like_10 Liga 72.6 35 0.00076 31.1 10.0 88 92-187 3-91 (273)
478 cd02808 GltS_FMN Glutamate syn 72.5 44 0.00096 33.5 11.3 73 87-163 236-320 (392)
479 PRK12595 bifunctional 3-deoxy- 72.5 20 0.00043 35.7 8.7 85 70-157 232-322 (360)
480 PRK05567 inosine 5'-monophosph 72.3 58 0.0012 33.7 12.3 143 79-237 230-389 (486)
481 TIGR00970 leuA_yeast 2-isoprop 72.2 25 0.00054 37.1 9.7 107 65-174 171-290 (564)
482 PF13377 Peripla_BP_3: Peripla 72.1 56 0.0012 27.1 11.3 97 82-187 1-105 (160)
483 PF05853 DUF849: Prokaryotic p 72.1 5.1 0.00011 38.2 4.3 126 68-204 50-191 (272)
484 PRK07315 fructose-bisphosphate 72.0 93 0.002 30.0 12.9 98 73-178 26-124 (293)
485 PF02126 PTE: Phosphotriestera 71.9 7.2 0.00016 37.9 5.3 109 72-188 99-215 (308)
486 cd00564 TMP_TenI Thiamine mono 71.9 66 0.0014 27.8 15.3 155 63-256 3-180 (196)
487 cd04728 ThiG Thiazole synthase 71.8 91 0.002 29.4 14.4 178 76-267 20-220 (248)
488 cd06312 PBP1_ABC_sugar_binding 71.8 34 0.00073 31.3 9.7 60 124-188 30-91 (271)
489 PRK14040 oxaloacetate decarbox 71.8 1.1E+02 0.0024 32.6 14.5 101 76-186 97-205 (593)
490 TIGR03586 PseI pseudaminic aci 71.8 70 0.0015 31.4 12.1 76 60-156 91-166 (327)
491 cd06285 PBP1_LacI_like_7 Ligan 71.7 56 0.0012 29.6 11.1 73 74-158 40-121 (265)
492 PRK05985 cytosine deaminase; P 71.6 83 0.0018 31.1 13.0 18 220-237 280-297 (391)
493 cd05015 SIS_PGI_1 Phosphogluco 71.5 17 0.00038 31.4 7.2 85 74-159 3-118 (158)
494 TIGR01304 IMP_DH_rel_2 IMP deh 71.4 19 0.00042 35.9 8.2 38 120-161 250-288 (369)
495 cd04733 OYE_like_2_FMN Old yel 71.4 18 0.0004 35.3 8.1 137 13-164 179-329 (338)
496 PRK08599 coproporphyrinogen II 71.3 48 0.001 32.8 11.2 112 76-191 35-165 (377)
497 TIGR01464 hemE uroporphyrinoge 71.2 24 0.00051 34.4 8.8 72 79-157 183-261 (338)
498 cd07898 Adenylation_DNA_ligase 71.2 13 0.00028 33.5 6.5 59 101-159 124-182 (201)
499 PRK00230 orotidine 5'-phosphat 71.2 35 0.00076 31.5 9.5 21 80-100 71-91 (230)
500 TIGR00167 cbbA ketose-bisphosp 71.1 51 0.0011 31.8 10.8 124 73-206 84-228 (288)
No 1
>PLN02417 dihydrodipicolinate synthase
Probab=100.00 E-value=8.2e-67 Score=497.22 Aligned_cols=279 Identities=82% Similarity=1.343 Sum_probs=264.2
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
|..|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++++++|+|||+||+++
T Consensus 1 ~~~Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 1 KKLRLITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred CCCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEee
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 214 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~ 214 (356)
+|+++++++++|+++|||++|++||||++++++++++||++|+++.|+++||+|++||++++++++++|+++|||+|||+
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKd 160 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKE 160 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999998779999999999999999999999999999999999
Q ss_pred cCchhhHhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCChHH
Q 018443 215 CVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIP 294 (356)
Q Consensus 215 s~~d~~i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~ag~a~~l~~~l~~l~~~~~~~~~~~~ 294 (356)
+++|.++.+...++|.||+|.|+.++...+..|++|++++++|++|+.++++|+++++.++|+++.+++++++..+++..
T Consensus 161 ss~~~~~~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~a~~~~~l~~~l~~l~~~~~~~~~~~~ 240 (280)
T PLN02417 161 CTGNDRVKQYTEKGILLWSGNDDECHDARWDYGADGVISVTSNLVPGLMHKLMFAGKNKELNDKLLPLMDWLFCEPNPIG 240 (280)
T ss_pred CCCcHHHHHHhcCCeEEEEcccHHhhHHHHhCCCCEEEecHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 99985555555679999999999888754788999999999999999999999998778899999999998777777778
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018443 295 LNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 333 (356)
Q Consensus 295 ~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~gl 333 (356)
+|++|+++|++.+.+|+|+.+++++++++|+++++++++
T Consensus 241 ~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 279 (280)
T PLN02417 241 LNTALAQLGLIRPVFRLPYVPLDLAKRAEFVALVKAIGR 279 (280)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999988888999999999999999999999875
No 2
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.2e-67 Score=500.39 Aligned_cols=278 Identities=40% Similarity=0.657 Sum_probs=259.8
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
+++.|+++|++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++++++|+|||+|+|+
T Consensus 3 ~~~~Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~ 82 (299)
T COG0329 3 AKFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS 82 (299)
T ss_pred cccCcceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEE
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 211 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivG 211 (356)
++|+++++++++|+++|+|++|++||||++++|+++++||++|+++ .|+|+||+|.+||++++++++.+|+++|||+|
T Consensus 83 ~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivg 162 (299)
T COG0329 83 NSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVG 162 (299)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred EeecCchh-hH---hhhhCC-CeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHHc---CC---cHHHHHHHH
Q 018443 212 VKECVGND-RV---EHYTGN-GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFG---GK---NPSLNTKLF 280 (356)
Q Consensus 212 iK~s~~d~-~i---~~~~~~-~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~a---g~---a~~l~~~l~ 280 (356)
||++++|. ++ .+...+ +|.+|+|.|++++.. +.+|++|+||+++|++|+++++||++ |+ ++++|+++.
T Consensus 163 iKd~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~-~~~G~~G~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~ 241 (299)
T COG0329 163 VKDSSGDLDRLEEIIAALGDRDFIVLSGDDELALPA-LLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLL 241 (299)
T ss_pred EEeCCcCHHHHHHHHHhcCccCeeEEeCchHHHHHH-HhCCCCeEEecccccCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999994 33 333455 799999999999876 67999999999999999999999974 54 688999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHcCCCCC-CCCCCCCCCCHHHHHH-HHHHHHHcC
Q 018443 281 PLIEWLFQEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKRAE-FVNLVNQIG 332 (356)
Q Consensus 281 ~l~~~~~~~~~~~~~K~al~~~G~~~g-~~R~Pl~~l~~~~~~~-l~~~l~~~g 332 (356)
|+++.++..+++..+|++|+++|++.+ .+|+|+.++++++++. +++.++..+
T Consensus 242 ~l~~~~~~~~~~~~iK~~l~~~G~~~~~~~R~Pl~~l~~~~~~~~~~~~~~~~~ 295 (299)
T COG0329 242 PLIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEEEREKVLEAALAALG 295 (299)
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998765 5999999999999888 777777654
No 3
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=100.00 E-value=2e-65 Score=490.75 Aligned_cols=277 Identities=28% Similarity=0.480 Sum_probs=259.2
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
++|++++++|||++||+||+++++++++|+++.||+|++++|||||+++||.+||+++++.+++.+++|+||++||++++
T Consensus 1 ~~Gv~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~ 80 (294)
T TIGR02313 1 FRGSIAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALN 80 (294)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCEEE
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAG 211 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P~~tG~~ls~~~l~~La-~~pnivG 211 (356)
|+++++++|+|+++|||++|++||||++++++++++||++|+++ .||++||+|.+||++++++++.+|+ ++|||+|
T Consensus 81 t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~g 160 (294)
T TIGR02313 81 HDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVG 160 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999999999985 6999999999999999999999999 6999999
Q ss_pred EeecCchh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018443 212 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 281 (356)
Q Consensus 212 iK~s~~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~ 281 (356)
||++++|. + +.+..+++|.||+|.|+++++. +.+|++|++|+++|++|++++++|+ +|+ ++++|.++.+
T Consensus 161 iK~ss~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~ 239 (294)
T TIGR02313 161 AKESNKDFEHLNHLFLEAGRDFLLFCGIELLCLPM-LAIGAAGSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLE 239 (294)
T ss_pred EEeCCCCHHHHHHHHHhcCCCeEEEEcchHHHHHH-HHCCCCEEEecHHhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999983 3 3333467999999999988875 8999999999999999999999997 464 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018443 282 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 333 (356)
Q Consensus 282 l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~gl 333 (356)
+++.++..+++..+|++|+++|++.|.+|+|+.+++++++++|+++++++++
T Consensus 240 ~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 291 (294)
T TIGR02313 240 ANDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKYGK 291 (294)
T ss_pred HHHHHccCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9987777777778999999999988899999999999999999999999875
No 4
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=100.00 E-value=8.8e-65 Score=485.12 Aligned_cols=277 Identities=33% Similarity=0.528 Sum_probs=252.5
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
+++||+++++|||++||+||++++++++++++++|++|++++|||||+++||.+||+++++.+++++++|+|||+||+++
T Consensus 1 ~~~Gi~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 1 MLKGIFPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp GGSEEEEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred CCCCeeeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEE
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 212 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGi 212 (356)
||+++++++++|+++|||+++++||+|+++|++++++||++|+++ .|+++||+|..||.++|++++.+|+++|||+|+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~gi 160 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGI 160 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEE
Confidence 999999999999999999999999999999999999999999987 699999999999999999999999999999999
Q ss_pred eecCchh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018443 213 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 282 (356)
Q Consensus 213 K~s~~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l 282 (356)
|++++|. + +.+..+++|.||+|.|.+++.. +..|++|++++++|++|+.++++|+ +|+ +.++|+++.++
T Consensus 161 K~s~~~~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~i~~~~~~Gd~~~A~~l~~~l~~~ 239 (289)
T PF00701_consen 161 KDSSGDLERLIQLLRAVGPDFSVFCGDDELLLPA-LAAGADGFISGLANVFPELIVEIYDAFQAGDWEEARELQQRLLPL 239 (289)
T ss_dssp EESSSBHHHHHHHHHHSSTTSEEEESSGGGHHHH-HHTTSSEEEESGGGTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EcCchhHHHHHHHhhhcccCeeeecccccccccc-ccccCCEEEEcccccChHHHHHHHHHHHcCcHHHHHHHHHHHhHH
Confidence 9999984 3 3344578999999998887754 8999999999999999999999997 465 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018443 283 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332 (356)
Q Consensus 283 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 332 (356)
++.+...++++.+|++|+++|++.+.+|+|+.+++++++++|+++++++|
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 289 (289)
T PF00701_consen 240 REALFSGGNIAAIKYALELRGLIAGPVRPPLLPLSDEEKEELKEILKEAG 289 (289)
T ss_dssp HHHHTSSSTTHHHHHHHHHTTSSSSB--TTS-SS-HHHHHHHHHHHHHTT
T ss_pred HHHHHccCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 99998888899999999999999888999999999999999999999986
No 5
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=100.00 E-value=2.9e-64 Score=482.66 Aligned_cols=277 Identities=25% Similarity=0.383 Sum_probs=258.7
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~-~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
+++||+++++|||++||+||+++++++++++++ .|++||+++|||||+++||.+||+++++.+++++++|+|||+|+++
T Consensus 3 ~~~Gv~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 3 NLKGVYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCCceeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 478999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEE
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 211 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivG 211 (356)
++|+++++++++|+++|||+++++||+|++++++++++||++|+++ .|+++||+|..||++++++++.+|+++|||+|
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvg 162 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIG 162 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeecCchh-hHhhh--hCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018443 212 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 282 (356)
Q Consensus 212 iK~s~~d~-~i~~~--~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l 282 (356)
||++++|. ++.++ ..+++.||+|.|+.++.. +..|++|++++++|++|+.++++|+ +|+ ++++|+++.++
T Consensus 163 iK~s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~p~~~~~l~~~~~~gd~~~a~~l~~~~~~~ 241 (293)
T PRK04147 163 VKQTAGDLYQLERIRKAFPDKLIYNGFDEMFASG-LLAGADGAIGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDV 241 (293)
T ss_pred EEeCCCCHHHHHHHHHhCCCCEEEEeehHHHHHH-HHcCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999994 33222 234789999999998765 8999999999999999999999997 464 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018443 283 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332 (356)
Q Consensus 283 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 332 (356)
++.++..+++..+|++|+++|++.+.+|+|+.++++++++++++++++++
T Consensus 242 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 291 (293)
T PRK04147 242 IDLLIKNGVYPGLKEILHYMGVDAGLCRKPFKPVDEKYLPALKALAAKYL 291 (293)
T ss_pred HHHHhhcCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 99777777778899999999998899999999999999999999999875
No 6
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=100.00 E-value=6.7e-64 Score=478.34 Aligned_cols=273 Identities=40% Similarity=0.656 Sum_probs=255.9
Q ss_pred ceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHH
Q 018443 58 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 137 (356)
Q Consensus 58 Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~ 137 (356)
||+++++|||++||+||+++++++++|+++.||+|++++|||||+++||.+||+++++.+++++++++||++||+++|++
T Consensus 1 Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~ 80 (285)
T TIGR00674 1 GVITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATE 80 (285)
T ss_pred CccCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeec
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 215 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s 215 (356)
++++++++|+++|+|+++++||+|++++++++++||++|+++ .||++||+|.+||++++++++++|+++|||+|+|++
T Consensus 81 ~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s 160 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEA 160 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeC
Confidence 999999999999999999999999999999999999999997 699999999999999999999999999999999999
Q ss_pred Cchh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHH
Q 018443 216 VGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEW 285 (356)
Q Consensus 216 ~~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l~~~ 285 (356)
++|. + +.+..+++|.||+|.|++++.. +.+|++|++++++|++|++++++|+ +|+ ++++|+++.+++++
T Consensus 161 ~~d~~~~~~l~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~i~~~~~~~P~~~~~l~~a~~~gd~~~A~~lq~~l~~l~~~ 239 (285)
T TIGR00674 161 TGNLERISEIKAIAPDDFVVLSGDDALTLPM-MALGGKGVISVTANVAPKLMKEMVNNALEGDFAEAREIHQKLMPLHKA 239 (285)
T ss_pred CCCHHHHHHHHHhcCCCeEEEECchHHHHHH-HHcCCCEEEehHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9984 3 3333456899999999888875 8999999999999999999999997 464 67899999999987
Q ss_pred HhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018443 286 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQI 331 (356)
Q Consensus 286 ~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 331 (356)
++..+++..+|++|+.+|++.|.+|+|+.+++++++++|+++++++
T Consensus 240 ~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~l~~~l~~~ 285 (285)
T TIGR00674 240 LFIETNPIPVKTALALLGLIEGELRLPLTELSEEHRNKLRDVLKDL 285 (285)
T ss_pred HhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 7766777779999999999988999999999999999999999864
No 7
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=100.00 E-value=2.4e-63 Score=475.51 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=255.7
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCC-CCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~G-v~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
+.||+++++|||++||+||+++++++++|+++.| ++||+++|||||+++||.|||+++++.+++.+++|+||++||+++
T Consensus 1 ~~Gv~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 80 (290)
T TIGR00683 1 LKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSV 80 (290)
T ss_pred CCCeEeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 4799999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEE
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 211 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P~~tG~~ls~~~l~~La~~pnivG 211 (356)
+|+++++++++|+++|||+++++||+|++++++++++||++|+++ +|+++||+|++||++++++++.+|+++|||+|
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~g 160 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLG 160 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999874 69999999999999999999999999999999
Q ss_pred EeecCchh-hHhhh--hCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018443 212 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 282 (356)
Q Consensus 212 iK~s~~d~-~i~~~--~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l 282 (356)
||++++|. ++.++ ..+++.|++|.|++++.. +..|++|++++++|++|+.++++|+ +|+ +.++|+++.++
T Consensus 161 iK~s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~~ 239 (290)
T TIGR00683 161 VKFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPA-ASLGVDGAIGSTFNVNGVRARQIFELTKAGKLQEALEIQHVTNDL 239 (290)
T ss_pred EEeCCCCHHHHHHHHHhCCCCEEEECchHHHHHH-HHCCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999984 33322 235899999999998876 8999999999999999999999986 465 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCC-CCHHHHHHHHHHHHHc
Q 018443 283 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVP-LPQEKRAEFVNLVNQI 331 (356)
Q Consensus 283 ~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~-l~~~~~~~l~~~l~~~ 331 (356)
++.+...+++..+|++|+++|++.|.+|+|+.+ +++|+++.++++++++
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~~~~~~~~~~~~~~~~~~ 289 (290)
T TIGR00683 240 IEGILANGLYLTIKELLKLEGVDAGYCREPMTSKATPEQKAKAKDLKAKF 289 (290)
T ss_pred HHHHhhcCCCHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhc
Confidence 998777777778999999999988999999997 9999999999999874
No 8
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=100.00 E-value=2.9e-63 Score=474.60 Aligned_cols=274 Identities=24% Similarity=0.358 Sum_probs=255.9
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHC-CCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~-Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
++||+++++|||++||+||+++++++++|+++. |++|++++|||||+++||.+||+++++.+++++++++|||+|+++.
T Consensus 1 ~~Gv~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~ 80 (288)
T cd00954 1 LKGLIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred CCCeeeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCC
Confidence 479999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEE
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 211 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P~~tG~~ls~~~l~~La~~pnivG 211 (356)
+|+++++++++|+++|||++|++||+|++++++++++||++|+++ +||++||+|.++|++++++++.+|+++|||+|
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivg 160 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIG 160 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999986 49999999999999999999999999999999
Q ss_pred EeecCchh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018443 212 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 281 (356)
Q Consensus 212 iK~s~~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~ 281 (356)
||++++|. + +.+..+++|.||+|.|+.++.. +..|++|++++++|++|+.++++|+ +|+ +.++|+++.+
T Consensus 161 iK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~i~~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~~~~ 239 (288)
T cd00954 161 VKFTATDLYDLERIRAASPEDKLVLNGFDEMLLSA-LALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVIND 239 (288)
T ss_pred EEeCCCCHHHHHHHHHhCCCCcEEEEechHHHHHH-HHcCCCEEEeChhhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999983 3 3333455999999999988765 8999999999999999999999997 464 5789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018443 282 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 330 (356)
Q Consensus 282 l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 330 (356)
+++.+...+++..+|++|+++|++.|.+|+|+.+++++++++|++++++
T Consensus 240 ~~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~~~~ 288 (288)
T cd00954 240 VITVLIKNGLYPTLKAILRLMGLDAGPCRLPLRKVTEKALAKAKELAAK 288 (288)
T ss_pred HHHHHhccCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHhhC
Confidence 9997777777888999999999988999999999999999999998874
No 9
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=100.00 E-value=5e-63 Score=473.74 Aligned_cols=278 Identities=39% Similarity=0.633 Sum_probs=259.8
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++|+||++||++.+
T Consensus 2 ~~Gv~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~ 81 (292)
T PRK03170 2 FGGSITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS 81 (292)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEe
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 213 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK 213 (356)
|+++++++++|+++|+|+++++||+|++++++++++||++|+++ .|+++||+|..+|..+|++++++|+++|||+|+|
T Consensus 82 ~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK 161 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIK 161 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ecCchh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018443 214 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 283 (356)
Q Consensus 214 ~s~~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l~ 283 (356)
++++|. + +.+..+++|.||+|.|+.++.. +.+|++|++++++|++|++++++|+ +|+ ++++|+++.+++
T Consensus 162 ~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~l~~~~ 240 (292)
T PRK03170 162 EATGDLERVSELIELVPDDFAVYSGDDALALPF-LALGGVGVISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLH 240 (292)
T ss_pred ECCCCHHHHHHHHHhCCCCeEEEECChHhHHHH-HHcCCCEEEEhHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 3333456899999999988765 8999999999999999999999997 464 578999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018443 284 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 334 (356)
Q Consensus 284 ~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~gl~ 334 (356)
+.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++|+.
T Consensus 241 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~i~~~l~~~~~~ 291 (292)
T PRK03170 241 KALFIEPNPIPVKAALNLLGLIEGELRLPLVPLSEEEKEKLRAALKEAGLL 291 (292)
T ss_pred HHHhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 887777777889999999999888899999999999999999999998764
No 10
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=100.00 E-value=1.6e-61 Score=464.36 Aligned_cols=276 Identities=22% Similarity=0.314 Sum_probs=249.2
Q ss_pred cccccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec
Q 018443 52 EDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT 131 (356)
Q Consensus 52 ~~~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv 131 (356)
+.-.++|++++++|||++||+||+++++++++++++.||+|++++|||||+++||.+||+++++.+++++++|+|||+||
T Consensus 2 ~~~~~~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv 81 (296)
T TIGR03249 2 KRKAGSGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV 81 (296)
T ss_pred CCcccCceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 33347999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCC
Q 018443 132 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPN 208 (356)
Q Consensus 132 g~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~-~pn 208 (356)
++ +|+++++++++|+++|||++|++||||++++++++++||++|+++ .|+++|| ++|++++++++.+|++ +||
T Consensus 82 ~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn---~~g~~l~~~~~~~La~~~~n 157 (296)
T TIGR03249 82 GG-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ---RDNAVLNADTLERLADRCPN 157 (296)
T ss_pred Cc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CCCCCCCHHHHHHHHhhCCC
Confidence 96 799999999999999999999999999999999999999999997 6999999 6799999999999996 999
Q ss_pred EEEEeecCchh-h---HhhhhCCCeEEEecC---cchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHH
Q 018443 209 LAGVKECVGND-R---VEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSL 275 (356)
Q Consensus 209 ivGiK~s~~d~-~---i~~~~~~~~~v~~G~---d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l 275 (356)
|+|||++++|. + +.+..+++|.||+|. |..++.. +..|++|++++++|++|++++++|+ +|+ ++++
T Consensus 158 vvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~-~~~Ga~G~is~~~n~~P~~~~~~~~~~~~gd~~~a~~l 236 (296)
T TIGR03249 158 LVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAY-LPLGVTSYSSAIFNFIPHIARAFYEALRRGDHATVGEI 236 (296)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHH-HhCCCCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999983 3 333346799999996 5566654 7899999999999999999999986 465 5677
Q ss_pred HH-HHHHHHHHHh-cCC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018443 276 NT-KLFPLIEWLF-QEP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332 (356)
Q Consensus 276 ~~-~l~~l~~~~~-~~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 332 (356)
++ .+.|+++.+. ... ++..+|++|+++|++.|.+|+|+.+++++++++|+++++++|
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 296 (296)
T TIGR03249 237 YKEFILPINEIRNRKKGYAVSIIKAGMEIVGLPAGPVRPPLTDLTKEEYAQLEVILKKAG 296 (296)
T ss_pred HHHHHHHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 66 5899988764 223 357799999999998899999999999999999999999875
No 11
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=100.00 E-value=1.5e-61 Score=461.54 Aligned_cols=272 Identities=42% Similarity=0.671 Sum_probs=254.3
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++++||++||+++|
T Consensus 1 ~~Gv~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 1 FGGSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCeeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEe
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 213 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK 213 (356)
++++++++++|+++|+|+++++||+|++++++++++||++|+++ +|+++||+|.++|+.+|++++++|+++|||+|+|
T Consensus 81 ~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred ecCchh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018443 214 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 283 (356)
Q Consensus 214 ~s~~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l~ 283 (356)
++++|. + +.+..+++|.+|+|.|+.++.. +..|++|++++++|++|+.++++|+ +|+ +.++|+++.+++
T Consensus 161 ~s~~~~~~~~~~~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~~s~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~~~ 239 (284)
T cd00950 161 EATGDLDRVSELIALCPDDFAVLSGDDALTLPF-LALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLI 239 (284)
T ss_pred ECCCCHHHHHHHHHhCCCCeEEEeCChHhHHHH-HHCCCCEEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999883 3 3334567999999999887764 8899999999999999999999997 454 578999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 018443 284 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 328 (356)
Q Consensus 284 ~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l 328 (356)
++++..+++..+|++|+++|+..|.+|+|+.+++++++++|++.+
T Consensus 240 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~i~~~~ 284 (284)
T cd00950 240 KALFAEPNPIPVKAALALLGLISGELRLPLVPLSEELRAKLRAAL 284 (284)
T ss_pred HHHhcCCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHhC
Confidence 988777777889999999999888999999999999999999764
No 12
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=100.00 E-value=2.6e-61 Score=459.01 Aligned_cols=268 Identities=40% Similarity=0.650 Sum_probs=251.5
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 138 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ 138 (356)
|+++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++++||++|++++++++
T Consensus 1 i~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ 80 (281)
T cd00408 1 VIPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE 80 (281)
T ss_pred CCCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeecC
Q 018443 139 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV 216 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s~ 216 (356)
+++++++|+++|+|+++++||+|++++++++++||++|+++ .|+++||+|..+|+.++++++.+|+++|||+|+|+++
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~ 160 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS 160 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999997 7999999999999999999999999999999999999
Q ss_pred chh-h---HhhhhCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHHH
Q 018443 217 GND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEWL 286 (356)
Q Consensus 217 ~d~-~---i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~~l~~l~~~~ 286 (356)
+|. + +.+..+++|.+|+|.|.+++.. +..|++|++++++|++|+.++++|+ +|+ ++++|+++.++++.+
T Consensus 161 ~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~i~~~~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (281)
T cd00408 161 GDLDRLTRLIALLGPDFAVLSGDDDLLLPA-LALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL 239 (281)
T ss_pred CCHHHHHHHHHhcCCCeEEEEcchHHHHHH-HHcCCCEEEehHHhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 883 3 3344467999999998888765 8999999999999999999999987 454 678999999999988
Q ss_pred hcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHH
Q 018443 287 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNL 327 (356)
Q Consensus 287 ~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~ 327 (356)
...+++..+|++|+++|+..|.+|+|+.+++++++++|+++
T Consensus 240 ~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~l~~~ 280 (281)
T cd00408 240 FKEGNPAPVKAALALLGLDAGPVRLPLVPLSEEERAKLEAL 280 (281)
T ss_pred hcCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHh
Confidence 87778888999999999988999999999999999999875
No 13
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=100.00 E-value=3.1e-60 Score=456.67 Aligned_cols=274 Identities=24% Similarity=0.321 Sum_probs=246.5
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
+++||+++++|||++||+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++++++++|||+|+++
T Consensus 7 ~~~Gv~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~- 85 (303)
T PRK03620 7 LGSGLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG- 85 (303)
T ss_pred CcCceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCEEE
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAG 211 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La-~~pnivG 211 (356)
+|+++++++++|+++|+|+++++||||++++++++++||++|+++ .||++||.| |++++++++.+|+ ++|||+|
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~---g~~l~~~~l~~L~~~~pni~g 162 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD---NAVLTADTLARLAERCPNLVG 162 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC---CCCCCHHHHHHHHhhCCCEEE
Confidence 999999999999999999999999999999999999999999997 799999954 7899999999999 8999999
Q ss_pred EeecCchh-h---HhhhhCCCeEEEecCc--chhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHHHH-H
Q 018443 212 VKECVGND-R---VEHYTGNGIVVWSGND--DQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNT-K 278 (356)
Q Consensus 212 iK~s~~d~-~---i~~~~~~~~~v~~G~d--~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l~~-~ 278 (356)
||++++|. + +.+..+++|.||+|.| +..+...+.+|++|++++++|++|++++++|+ +|+ ++++++ .
T Consensus 163 iK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~is~~an~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 242 (303)
T PRK03620 163 FKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTYSSAVFNFVPEIALAFYRALRAGDHATVDRLLDDF 242 (303)
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999983 3 3333467999999984 33333447899999999999999999999997 464 456754 5
Q ss_pred HHHHHHHHh-cCC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018443 279 LFPLIEWLF-QEP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 332 (356)
Q Consensus 279 l~~l~~~~~-~~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 332 (356)
+.|+++.+. ... ++..+|++|+++|++.|.+|+|+.+++++++++|++++++++
T Consensus 243 ~~~l~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 298 (303)
T PRK03620 243 FLPYVALRNRKKGYAVSIVKAGARLVGLDAGPVRAPLTDLTPEELAELAALIAKGG 298 (303)
T ss_pred HHHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 789988654 223 467799999999998899999999999999999999999875
No 14
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=2.1e-60 Score=452.89 Aligned_cols=269 Identities=25% Similarity=0.321 Sum_probs=246.7
Q ss_pred CceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCH
Q 018443 57 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 136 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st 136 (356)
.|+++|++|||++ |+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.++ + ||+|||+++|
T Consensus 2 ~~v~~a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~ 77 (279)
T cd00953 2 PDKITPVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNL 77 (279)
T ss_pred CCcccceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCH
Confidence 5899999999998 9999999999999999999999999999999999999999999999999874 4 8999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCEEEEee
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKE 214 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~~-~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~-~pnivGiK~ 214 (356)
+++++++++|+++|||++|++||||++ ++++++++||++|++.+|+++||+|.+||++++++++.+|++ +|||+|||+
T Consensus 78 ~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~ 157 (279)
T cd00953 78 EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKD 157 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEe
Confidence 999999999999999999999999987 589999999999999779999999999999999999999995 799999999
Q ss_pred cCchh-hHhhh--hCCCeEEEecCcchhHhHHHHcCCceeecccccccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhc
Q 018443 215 CVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG---KNPSLNTKLFPLIEWLFQ 288 (356)
Q Consensus 215 s~~d~-~i~~~--~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~ag---~a~~l~~~l~~l~~~~~~ 288 (356)
+++|. ++.++ ..++|.||+|.|+.++.. +..|++|++++++|++|++++++|++. +++++|+++.++++.+..
T Consensus 158 s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~Ga~G~i~~~~n~~P~~~~~l~~a~~~~~a~~~q~~~~~l~~~~~~ 236 (279)
T cd00953 158 TNEDISHMLEYKRLVPDFKVYSGPDSLIFSA-LRSGLDGSVAAASNYLPEVFVKIKDHVAIEDAFKLQFLINEVLDASRK 236 (279)
T ss_pred CccCHHHHHHHHHhCCCeEEEEccHHHHHHH-HHcCCCeEEechhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99983 33332 235899999999988875 899999999999999999999999864 477899999999987766
Q ss_pred CCChHHHHHHHH-HcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018443 289 EPNPIPLNTALA-QLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 330 (356)
Q Consensus 289 ~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 330 (356)
.+++..+|++++ ++|++.|.+|+|+.+++++++++|++++++
T Consensus 237 ~~~~~~~k~~~~~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 279 (279)
T cd00953 237 YGSWSANYSLVKIFQGYDAGEPRPPFYPLDEEEEEKLRKEVNE 279 (279)
T ss_pred cCCcHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHhhC
Confidence 666777999997 699988899999999999999999998874
No 15
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=4.8e-60 Score=456.38 Aligned_cols=273 Identities=20% Similarity=0.217 Sum_probs=247.2
Q ss_pred cCceeEeeecccCCC-------CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEE
Q 018443 56 ALRLITAIKTPYLPD-------GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI 128 (356)
Q Consensus 56 ~~Gvi~al~TPf~~d-------g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi 128 (356)
++||+++++|||++| |+||+++++++++++++.||+||+++|||||+++||.+||+++++.+++.+++|+|||
T Consensus 2 ~~Gv~~~~~TPf~~~~~~~~~~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi 81 (309)
T cd00952 2 IKGVWAIVPTPSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVF 81 (309)
T ss_pred CCceEeeeccCccCCccccccCCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 589999999999985 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 129 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 129 ~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
+||++++|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|++
T Consensus 82 ~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 82 VGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred EEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred CCCEEEEeecCchh-hH---hhhhCCCeEEEecCcchhHhHHHHcCC---ceeecccccccHHHHHHHHH---cCC---c
Q 018443 206 SPNLAGVKECVGND-RV---EHYTGNGIVVWSGNDDQCHDARWNHGA---TGVISVTSNLVPGMMRELMF---GGK---N 272 (356)
Q Consensus 206 ~pnivGiK~s~~d~-~i---~~~~~~~~~v~~G~d~~~l~~~l~~Ga---~G~is~~~n~~P~~~~~l~~---ag~---a 272 (356)
+|||+|||+++ |. ++ .+..+++|.||+|.|+.+ .. +..|+ +|++++++|++|+.++++|+ +|| +
T Consensus 162 ~pnivgiKdss-d~~~~~~~i~~~~~~~~v~~g~d~~l-~~-~~~~~~~~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A 238 (309)
T cd00952 162 IPQVVAAKYLG-DIGALLSDLAAVKGRMRLLPLEDDYY-AA-ARLFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDA 238 (309)
T ss_pred CCCEEEEEecC-ChHHHHHHHHHcCCCeEEeecchhHH-HH-HHhcCccCccEEEeccccCcHHHHHHHHHHHcCCHHHH
Confidence 99999999999 73 32 333457999999999854 44 44554 59999999999999999997 465 5
Q ss_pred HHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018443 273 PSLNTKLFPLIEWLFQEP--------NPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFVNLVNQI 331 (356)
Q Consensus 273 ~~l~~~l~~l~~~~~~~~--------~~~~~K~al~~~G~-~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 331 (356)
+++|+++.++++.++..+ ++..+|++|+++|+ ..|.+|+|+.++++++++++++--+++
T Consensus 239 ~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~~~~~~~~~~~~~~~~~ 306 (309)
T cd00952 239 RALTDRMRWAAEPLFPRGDFSEFSKYNIALEKARFDAAGYMRAGPARPPYNTAPEAYLEGARESGRRW 306 (309)
T ss_pred HHHHHHHHHHHHHHhccCccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhhh
Confidence 789999999998766432 25568999999997 678899999999999999999988775
No 16
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=100.00 E-value=2.5e-59 Score=447.73 Aligned_cols=268 Identities=23% Similarity=0.305 Sum_probs=242.8
Q ss_pred CceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCH
Q 018443 57 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 136 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st 136 (356)
.||+++++|||++||+||+++++++++|+++.||+|++++|||||+++||.+||+++++.+++.+++|+|||+|++. +|
T Consensus 2 ~Gi~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t 80 (289)
T cd00951 2 SGLLSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GT 80 (289)
T ss_pred CCeEEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCEEEEe
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 213 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~-~pnivGiK 213 (356)
+++++++++|+++|+|+++++||+|++++++++++||++|+++ +|+++||. +|++++++++.+|++ +|||+|+|
T Consensus 81 ~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~---~g~~l~~~~l~~L~~~~pnivgiK 157 (289)
T cd00951 81 ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFK 157 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC---CCCCCCHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999999999999999999999999999997 79999994 588999999999997 99999999
Q ss_pred ecCchh-h---HhhhhCCCeEEEecC---cchhHhHHHHcCCceeecccccccHHHHHHHHH---cCC---cHHH-HHHH
Q 018443 214 ECVGND-R---VEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSL-NTKL 279 (356)
Q Consensus 214 ~s~~d~-~---i~~~~~~~~~v~~G~---d~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~---ag~---a~~l-~~~l 279 (356)
++++|. + +.+..+++|.||+|. |.+++.. +.+|++|++++++|++|++++++|+ +|+ +.++ ++++
T Consensus 158 ds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~-l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~~~~~~~ 236 (289)
T cd00951 158 DGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAY-LAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFF 236 (289)
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHH-HHCCCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999983 3 333346789999996 5666654 8999999999999999999999986 465 4565 5568
Q ss_pred HHHHHHHhc-C-CChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018443 280 FPLIEWLFQ-E-PNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVN 329 (356)
Q Consensus 280 ~~l~~~~~~-~-~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~ 329 (356)
.++++.+.. . .++..+|++|+++|++.|.+|+|+.+++++++++|+++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~ 288 (289)
T cd00951 237 LPYVDIRNRRKGYAVSIVKAGARLVGRDAGPVRPPLTDLTEEELAQLTALIK 288 (289)
T ss_pred HHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHh
Confidence 899887532 2 3467799999999998889999999999999999999875
No 17
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.92 E-value=5e-24 Score=190.89 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=147.0
Q ss_pred eEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCCC---
Q 018443 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNS--- 135 (356)
Q Consensus 60 i~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~s--- 135 (356)
+.++.+|+. |++.++++++++++.|++|++++| ++++.+++..++ ++|+++|+++++
T Consensus 2 ~~~~~~~~~-----d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~ 62 (201)
T cd00945 2 DLTLLHPDA-----TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLT 62 (201)
T ss_pred cccccCCCC-----CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCC
Confidence 456677776 999999999999999999999998 888889888888 999999999999
Q ss_pred -HHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHHhc----CCeEEEeCCCCCCCCCCHHHHHHH---hc
Q 018443 136 -TREAIHATEQGFAVGMHAALHINPYYGKTS--LEGLISHFDSVLSM----GPTIIYNVPSRTGQDIPPRVIHTM---AQ 205 (356)
Q Consensus 136 -t~~ai~lar~a~~~Gadavlv~pP~y~~~s--~~~l~~y~~~va~~----~PiilYn~P~~tG~~ls~~~l~~L---a~ 205 (356)
++++++++++|+++|||++++.+|+|+.++ ++++.+||++++++ .|+++||+|..+ ++++.+.++ ++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---~~~~~~~~~~~~~~ 139 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---KTADEIAKAARIAA 139 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---CCHHHHHHHHHHHH
Confidence 999999999999999999999999998887 89999999999985 699999999877 678887776 45
Q ss_pred CCCEEEEeecCc------hh-h---HhhhhC--CCeEEEecCc--chhHhHHHHcCCceeecc
Q 018443 206 SPNLAGVKECVG------ND-R---VEHYTG--NGIVVWSGND--DQCHDARWNHGATGVISV 254 (356)
Q Consensus 206 ~pnivGiK~s~~------d~-~---i~~~~~--~~~~v~~G~d--~~~l~~~l~~Ga~G~is~ 254 (356)
.+|+.+||++++ +. + +.+..+ -++.++.|.+ +.+.. .+..|++|++.+
T Consensus 140 ~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~-~~~~Ga~g~~~g 201 (201)
T cd00945 140 EAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALA-AIEAGADGIGTS 201 (201)
T ss_pred HhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHH-HHHhccceeecC
Confidence 899999999988 62 2 333333 2677788887 66665 488999999864
No 18
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=99.86 E-value=1.3e-21 Score=192.64 Aligned_cols=217 Identities=15% Similarity=0.177 Sum_probs=165.9
Q ss_pred ccccCCCCCCCCcchh--cccCCcccc-ccCcee--EeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccC
Q 018443 30 AAIIPNYHLPMRSFEV--KNRTSAEDI-KALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL 104 (356)
Q Consensus 30 ~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~Gvi--~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~ 104 (356)
.-..-|+.+|-+...- --++..+.+ ++.|+. |.+.|||++++.+|.+.+.++++++++.|+|+|...|++||+..
T Consensus 95 ~irl~D~~~P~~~~~~f~GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~ 174 (367)
T cd08205 95 GIKLVDLELPDSLLAAFPGPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPY 174 (367)
T ss_pred ceEEEecCCCHHHHhhCCCCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCccc
Confidence 3445566666444311 112344443 244443 67899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhC---CCcE-EEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH--------HH
Q 018443 105 MSWDEHIMLIGHTVNCFG---ASVK-VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI--------SH 172 (356)
Q Consensus 105 Lt~eEr~~li~~~~~~~~---grvp-Vi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~--------~y 172 (356)
++.+||.++++.+++.++ |+.+ +++++++ +++|+++++++|+++|+|++|+.+|+|+..+.+++. .|
T Consensus 175 ~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~-~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H 253 (367)
T cd08205 175 APFEERVRACMEAVRRANEETGRKTLYAPNITG-DPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAH 253 (367)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEc
Confidence 999999999999999887 5544 4555654 579999999999999999999999999865544444 44
Q ss_pred HHH-------------------HHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCEEEEeec----Cc--hh----
Q 018443 173 FDS-------------------VLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKEC----VG--ND---- 219 (356)
Q Consensus 173 ~~~-------------------va~~--~PiilYn~P~~tG~~ls~~~l~~La~--~pnivGiK~s----~~--d~---- 219 (356)
+.. +++. .|+++||+|. .++.++++.+.++++ .+++.++|.+ ++ +.
T Consensus 254 ~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~-gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~~~v~ 332 (367)
T cd08205 254 PAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPGPG-GRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHPGRVP 332 (367)
T ss_pred cCcccccccCCCCcCCHHHHHHHHHHcCCCccccCCCc-cCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCHHHHH
Confidence 455 6664 6999999996 489999999999997 6999999997 42 21
Q ss_pred hHhhhhCCCeEEEecCcchhHhHHHHcCC
Q 018443 220 RVEHYTGNGIVVWSGNDDQCHDARWNHGA 248 (356)
Q Consensus 220 ~i~~~~~~~~~v~~G~d~~~l~~~l~~Ga 248 (356)
++.+..++++.++.|.+-+-++.....|+
T Consensus 333 ~l~~~~G~dv~~~~GGgi~gHp~g~~ag~ 361 (367)
T cd08205 333 ELYRDYGPDVILLAGGGILGHPDGAAAGV 361 (367)
T ss_pred HHHHHhCCcEEEEcCchhcCCCCChHHHH
Confidence 34445678899999887655554444443
No 19
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=99.62 E-value=6.5e-15 Score=137.80 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=126.7
Q ss_pred CCcccc--ccCceeEeeecccCCCCCC---CHHHHHHHHHHHHHCCCCEEEE--------ccCcccccCCCHHHHHHHHH
Q 018443 49 TSAEDI--KALRLITAIKTPYLPDGRF---DLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLIG 115 (356)
Q Consensus 49 ~~~~~~--~~~Gvi~al~TPf~~dg~I---D~~~l~~~v~~li~~Gv~Gl~v--------~GstGE~~~Lt~eEr~~li~ 115 (356)
.++++| ..++|..+..+|+..|++. |.+.+.++++++++.|++|+.+ +|++||...+|.+|+.+.++
T Consensus 52 ~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~ 131 (243)
T cd00377 52 LTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIK 131 (243)
T ss_pred CCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHH
Confidence 455554 3677889999999999888 9999999999999999999999 99999999999999999999
Q ss_pred HHHHHhCC--CcEEEEe-----cCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEe
Q 018443 116 HTVNCFGA--SVKVIGN-----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYN 186 (356)
Q Consensus 116 ~~~~~~~g--rvpVi~g-----vg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn 186 (356)
.+++..++ +++|+++ ++..+++++|++++.++++|||++++.+|. +. +++++++++ .|+++|+
T Consensus 132 aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~----~~----~~~~~~~~~~~~Pl~~~~ 203 (243)
T cd00377 132 AARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK----DP----EEIRAFAEAPDVPLNVNM 203 (243)
T ss_pred HHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC----CH----HHHHHHHhcCCCCEEEEe
Confidence 99999887 8999999 665789999999999999999999998886 33 677777776 7999999
Q ss_pred CCCCCCCCCCHHHHHHH
Q 018443 187 VPSRTGQDIPPRVIHTM 203 (356)
Q Consensus 187 ~P~~tG~~ls~~~l~~L 203 (356)
.|... .++++.+.+|
T Consensus 204 ~~~~~--~~~~~~l~~l 218 (243)
T cd00377 204 TPGGN--LLTVAELAEL 218 (243)
T ss_pred cCCCC--CCCHHHHHHC
Confidence 88532 5788888887
No 20
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=99.58 E-value=1.4e-14 Score=142.51 Aligned_cols=186 Identities=10% Similarity=0.131 Sum_probs=151.9
Q ss_pred CceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC----CCcEEEEecC
Q 018443 57 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG----ASVKVIGNTG 132 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~----grvpVi~gvg 132 (356)
+.++..++=| . -+|.+.+.+++..+...|+|+|-..+++||...++.+||.+.+..+++.+. ++++++++++
T Consensus 126 rPl~~tiiKP---~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit 201 (364)
T cd08210 126 RPLLCSALKP---Q-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT 201 (364)
T ss_pred CceEEEEecc---c-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC
Confidence 3366666666 3 499999999999999999999999999999999999999999999998776 7899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC-----CCCHHHH----HHH-------------------HHHHHhc--CCe
Q 018443 133 SNSTREAIHATEQGFAVGMHAALHINPYYG-----KTSLEGL----ISH-------------------FDSVLSM--GPT 182 (356)
Q Consensus 133 ~~st~~ai~lar~a~~~Gadavlv~pP~y~-----~~s~~~l----~~y-------------------~~~va~~--~Pi 182 (356)
+. +.|++++++.|+++|++++|+.++.|+ ..+++.. ..| |..+++. .|+
T Consensus 202 a~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~ 280 (364)
T cd08210 202 GP-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADA 280 (364)
T ss_pred CC-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCE
Confidence 86 669999999999999999999999886 4455544 555 8888875 699
Q ss_pred EEEeCCCCCCCCCCHHHHHHHhc--CCCEEEEeec----Cc--hh----hHhhhhCCCeEEEecCcchhHhHHHHcCC
Q 018443 183 IIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKEC----VG--ND----RVEHYTGNGIVVWSGNDDQCHDARWNHGA 248 (356)
Q Consensus 183 ilYn~P~~tG~~ls~~~l~~La~--~pnivGiK~s----~~--d~----~i~~~~~~~~~v~~G~d~~~l~~~l~~Ga 248 (356)
++||+|. .++.++++.+.++++ .+++.++|.+ ++ +. ++.+..++++.+..|.+-+-++.....|+
T Consensus 281 ~~~~~~~-g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~ 357 (364)
T cd08210 281 VIFPNYG-GRFGFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENT 357 (364)
T ss_pred EEeCCCc-CCccCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHH
Confidence 9999995 589999999999996 6889999997 42 21 34445578898888887655544344443
No 21
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=99.40 E-value=7.7e-12 Score=119.39 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=120.7
Q ss_pred CCcccc--ccCceeEeeecc--cCCCCCCCHHHHHHHHHHHHHCCCCEEEE-----------ccCcccccCCCHHHHHHH
Q 018443 49 TSAEDI--KALRLITAIKTP--YLPDGRFDLEAYDDLVNMQIVNGAEGMIV-----------GGTTGEGQLMSWDEHIML 113 (356)
Q Consensus 49 ~~~~~~--~~~Gvi~al~TP--f~~dg~ID~~~l~~~v~~li~~Gv~Gl~v-----------~GstGE~~~Lt~eEr~~l 113 (356)
++++++ ..++|..++.+| +|.|+-.|...+.+.++++++.|+.|+.+ +|+.||...+|.+|+.+.
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 344443 467899999999 87654499999999999999999999999 888999999999999999
Q ss_pred HHHHHHH-hCCCcEEEEe----cCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHh---cCCeEEE
Q 018443 114 IGHTVNC-FGASVKVIGN----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS---MGPTIIY 185 (356)
Q Consensus 114 i~~~~~~-~~grvpVi~g----vg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~---~~PiilY 185 (356)
++++++. .+++++|++. +...+++++|++++.++++|||++++. +...+.+++.++++++.. ..|+++
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~~~~~~~~~p~~pl~~- 216 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH---SRKKDPDEILEFARRFRNHYPRTPLVI- 216 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHHHHHhhhhCCCCCEEE-
Confidence 9999987 5678999999 445579999999999999999999985 334689999999999875 358753
Q ss_pred eCCCCCCCCCCHHHHHHH
Q 018443 186 NVPSRTGQDIPPRVIHTM 203 (356)
Q Consensus 186 n~P~~tG~~ls~~~l~~L 203 (356)
+|..++ .++.+.+.+|
T Consensus 217 -~~~~~~-~~~~~eL~~l 232 (285)
T TIGR02320 217 -VPTSYY-TTPTDEFRDA 232 (285)
T ss_pred -ecCCCC-CCCHHHHHHc
Confidence 243222 3565555555
No 22
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=98.45 E-value=6.6e-06 Score=78.85 Aligned_cols=261 Identities=18% Similarity=0.219 Sum_probs=151.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCC--------CHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSN--------STREAI 140 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~--------st~~ai 140 (356)
...|||+++-++-++|-+.|..--=..-|.--+.-|++..-+++|+...++++. ...|..|+|.. +.++.+
T Consensus 52 ~aaiDWd~TlafR~~Lw~~GLgVAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD~L~~~~~~sld~V~ 131 (382)
T PF06187_consen 52 PAAIDWDATLAFRRHLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSAAEARAVGARIACGAGTDQLDPAPAASLDDVI 131 (382)
T ss_dssp ---B-HHHHHHHHHHHHHTT-EEEET-GGGTBTTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--TTS---TT--HHHHH
T ss_pred CccCCHHHHHHHHHHHHHccchHHHHhhhhhhcCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcCCCCCCCCCCHHHHH
Confidence 357999999999999999996444444566667779999999999999987753 23567787722 344332
Q ss_pred ----HHHHHHHHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHhc--CCeEEEeC-----CCCCCC----CC--CHHHHH
Q 018443 141 ----HATEQGFAVGMHAALHINPYYG--KTSLEGLISHFDSVLSM--GPTIIYNV-----PSRTGQ----DI--PPRVIH 201 (356)
Q Consensus 141 ----~lar~a~~~Gadavlv~pP~y~--~~s~~~l~~y~~~va~~--~PiilYn~-----P~~tG~----~l--s~~~l~ 201 (356)
|.....++.|...|+...--.- ..++++..+-|..|.+. .|||++=. |...|+ ++ ..+++.
T Consensus 132 ~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l 211 (382)
T PF06187_consen 132 AAYEEQLEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQADEPVILHWLGDMFDPALAGYWGSADLDAAMDTVL 211 (382)
T ss_dssp HHHHHHHHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-SS-EEEEEE-TTT-GGGTTTTS-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEEEEecccccCcccccccCCCcHHHHHHHHH
Confidence 4556778899988775532222 25788999999999876 59998854 555565 22 246777
Q ss_pred HHh-cC-CCEEEEeecCchh----hHhhhhCCCeEEEecCcchhHhHHHHcC-----CceeecccccccHHHHHHHH--H
Q 018443 202 TMA-QS-PNLAGVKECVGND----RVEHYTGNGIVVWSGNDDQCHDARWNHG-----ATGVISVTSNLVPGMMRELM--F 268 (356)
Q Consensus 202 ~La-~~-pnivGiK~s~~d~----~i~~~~~~~~~v~~G~d~~~l~~~l~~G-----a~G~is~~~n~~P~~~~~l~--~ 268 (356)
+|- ++ +.|-|||.|.-|. .+++..+.++++|+|+|-.+ +. +..| .+...+....+.|.....+- +
T Consensus 212 ~lI~~~~~kVdGIKiSLLD~~~Ei~lRrrLP~gVr~YTGDDFnY-pe-LI~GD~~g~S~ALLGIFdaiAPaAsaAl~~Ld 289 (382)
T PF06187_consen 212 ELIAAHADKVDGIKISLLDAEKEIALRRRLPEGVRMYTGDDFNY-PE-LIAGDGQGHSHALLGIFDAIAPAASAALAALD 289 (382)
T ss_dssp HHHHHTGGGEEEEEEES--HHHHHHHHTS--TT-EEEE--TTTH-HH-HHH--SS---EEEESHHHHTHHHHHHHHHHHH
T ss_pred HHHHhChhhcCeeEecccCcHHHHHHHHhCCccceeecCCCcCc-HH-HhcCCCCCccHHHhhcchhhchHHHHHHHHHh
Confidence 766 44 7899999999883 45666788999999987544 54 6777 66666666777888877764 4
Q ss_pred cCCcH---HHHHHHHHHHHHHhcCCChHHHHH----HHHHcCCCCCCCCCCCC---CCCHHHHHHHHHHHHHcCcc
Q 018443 269 GGKNP---SLNTKLFPLIEWLFQEPNPIPLNT----ALAQLGVVRPVFRLPYV---PLPQEKRAEFVNLVNQIGRE 334 (356)
Q Consensus 269 ag~a~---~l~~~l~~l~~~~~~~~~~~~~K~----al~~~G~~~g~~R~Pl~---~l~~~~~~~l~~~l~~~gl~ 334 (356)
+|+.. ++.+-..||-..+|..|.. .+|. ..++-|.- .+.+..-. .=|--...++-++..+.|+.
T Consensus 290 ~gd~~~f~~il~pTvpLsRhiF~aPT~-~YKtGvvFLAwLnGhQ-~hF~MvgG~qsaRs~~hla~~frLAD~agll 363 (382)
T PF06187_consen 290 AGDTAGFRAILDPTVPLSRHIFRAPTR-YYKTGVVFLAWLNGHQ-DHFTMVGGLQSARSLPHLAELFRLADQAGLL 363 (382)
T ss_dssp TT-HHHHHHHHTTHHHHHHHHT-SSGG-GHHHHHHHHHHHTTSS-S----GGGGGGSS-HHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHhccchHhHHHhhcCCch-hhhhhHHHHHHHcCCC-ccceecCccccccchHHHHHHHHHHhhhCCC
Confidence 67754 4555556777777776532 2454 22333432 12222211 11233566666777777754
No 23
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.74 E-value=0.0012 Score=61.86 Aligned_cols=124 Identities=20% Similarity=0.192 Sum_probs=90.4
Q ss_pred CCCCC-HHHHHHHHHHHHHCCCCEEEEccC---cccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCC-----CCHHHH
Q 018443 70 DGRFD-LEAYDDLVNMQIVNGAEGMIVGGT---TGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGS-----NSTREA 139 (356)
Q Consensus 70 dg~ID-~~~l~~~v~~li~~Gv~Gl~v~Gs---tGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~-----~st~~a 139 (356)
+|==| .....+.++.+++.|+.|+.+=-. .+....++.+|-.+=++.+++.... +.-|++=+-+ .+.+|+
T Consensus 78 ~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~dea 157 (238)
T PF13714_consen 78 TGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEA 157 (238)
T ss_dssp TTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHH
T ss_pred cccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHH
Confidence 34334 889999999999999999998332 2777788999999999999997653 5556665544 478999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018443 140 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 203 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~L 203 (356)
|++++.+.++|||++++..+ .+.+++.++-+++ ..|+.+--.| ..++.+.+.+|
T Consensus 158 I~R~~aY~eAGAD~ifi~~~----~~~~~i~~~~~~~--~~Pl~v~~~~----~~~~~~eL~~l 211 (238)
T PF13714_consen 158 IERAKAYAEAGADMIFIPGL----QSEEEIERIVKAV--DGPLNVNPGP----GTLSAEELAEL 211 (238)
T ss_dssp HHHHHHHHHTT-SEEEETTS----SSHHHHHHHHHHH--SSEEEEETTS----SSS-HHHHHHT
T ss_pred HHHHHHHHHcCCCEEEeCCC----CCHHHHHHHHHhc--CCCEEEEcCC----CCCCHHHHHHC
Confidence 99999999999999998665 5677887777777 3786655432 23787777777
No 24
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.65 E-value=0.0037 Score=60.16 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=91.9
Q ss_pred eEeeecccCCC---CCCCHHHHHHHHHHHHHCCCCEEEE--------ccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE
Q 018443 60 ITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV 127 (356)
Q Consensus 60 i~al~TPf~~d---g~ID~~~l~~~v~~li~~Gv~Gl~v--------~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV 127 (356)
.-+.-.|...| |==|.....+.++.+++.|+.|+.+ ||..+.-...+.+|..+=++.+++...+ +.-|
T Consensus 74 ~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~I 153 (292)
T PRK11320 74 TDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVI 153 (292)
T ss_pred HhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEE
Confidence 33334455433 4238999999999999999999988 4555445567999999999999886543 3444
Q ss_pred EEecC---CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE--EeCCCCCCCCCCHHHHHH
Q 018443 128 IGNTG---SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII--YNVPSRTGQDIPPRVIHT 202 (356)
Q Consensus 128 i~gvg---~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~Piil--Yn~P~~tG~~ls~~~l~~ 202 (356)
++=+- ....+|+|++++.+.++|||++++..| .+.+++.++-+++ ..|++. ...| .+ -.++.+.+.+
T Consensus 154 iARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~----~~~~~i~~~~~~~--~~Pl~~n~~~~~-~~-p~~s~~~L~~ 225 (292)
T PRK11320 154 MARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM----TELEMYRRFADAV--KVPILANITEFG-AT-PLFTTEELAS 225 (292)
T ss_pred EEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC----CCHHHHHHHHHhc--CCCEEEEeccCC-CC-CCCCHHHHHH
Confidence 44442 345899999999999999999998653 3667766655544 258633 2222 11 1256666655
Q ss_pred H
Q 018443 203 M 203 (356)
Q Consensus 203 L 203 (356)
|
T Consensus 226 l 226 (292)
T PRK11320 226 A 226 (292)
T ss_pred c
Confidence 5
No 25
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.46 E-value=0.0083 Score=57.60 Aligned_cols=106 Identities=20% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE--------ccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecC---CCCHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG---SNSTRE 138 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v--------~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg---~~st~~ 138 (356)
|==+.....+.++.+++.|+.|+.+ ||..+--...+.+|..+=++.+++...+ +.-|++=+- ....++
T Consensus 83 GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 162 (285)
T TIGR02317 83 GFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDA 162 (285)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHH
Confidence 4345788889999999999999998 3444434466999999999999886653 233444332 345899
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCe
Q 018443 139 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPT 182 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~Pi 182 (356)
+|++++.+.++|||.+++..| .+.+++.++-+++. .|+
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~----~~~e~i~~~~~~i~--~Pl 200 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEAL----TSLEEFRQFAKAVK--VPL 200 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCC----CCHHHHHHHHHhcC--CCE
Confidence 999999999999999998543 36777665555442 576
No 26
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.23 E-value=0.015 Score=56.08 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=89.8
Q ss_pred eeEeeecccCCC---CCCCHHHHHHHHHHHHHCCCCEEEE--------ccCcccccCCCHHHHHHHHHHHHHHhCC-CcE
Q 018443 59 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVK 126 (356)
Q Consensus 59 vi~al~TPf~~d---g~ID~~~l~~~v~~li~~Gv~Gl~v--------~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvp 126 (356)
|.-+.-.|...| |==+.....+.|+.+++.|+.||.+ ||..+--...+.+|..+=++.+++.... +.-
T Consensus 72 I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 72 IVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred HHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence 344444566543 3334444789999999999999998 4444444467999999999888876543 333
Q ss_pred EEEec---CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCC-CCCHHHHHH
Q 018443 127 VIGNT---GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQ-DIPPRVIHT 202 (356)
Q Consensus 127 Vi~gv---g~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~-~ls~~~l~~ 202 (356)
|++=+ .....+++|++++.+.++|||++++.. ..+.+++.+.-+++. .|++ .|.=...+. .++.+.+.+
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~----~~~~~ei~~~~~~~~--~P~~-~nv~~~~~~p~~s~~eL~~ 224 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEA----MLDVEEMKRVRDEID--APLL-ANMVEGGKTPWLTTKELES 224 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC----CCCHHHHHHHHHhcC--CCee-EEEEecCCCCCCCHHHHHH
Confidence 44433 235699999999999999999999843 357777766655542 5763 222111122 255555555
Q ss_pred H
Q 018443 203 M 203 (356)
Q Consensus 203 L 203 (356)
|
T Consensus 225 l 225 (294)
T TIGR02319 225 I 225 (294)
T ss_pred c
Confidence 5
No 27
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.14 E-value=0.016 Score=56.80 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE---cCCCCCC---CCH-HHHHHHHHHHH
Q 018443 105 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH---INPYYGK---TSL-EGLISHFDSVL 177 (356)
Q Consensus 105 Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv---~pP~y~~---~s~-~~l~~y~~~va 177 (356)
...+++.+.++.+.+.. ++||+++++..+.++..+.++.++++|+|++.+ .||.... .+. +.+.+..++|.
T Consensus 84 ~g~d~~~~~i~~~~~~~--~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV--DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVK 161 (334)
T ss_pred cCHHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHH
Confidence 45788888888776654 479999999999999999999999999999988 5564321 111 23455556676
Q ss_pred hc--CCeEEEeCCC
Q 018443 178 SM--GPTIIYNVPS 189 (356)
Q Consensus 178 ~~--~PiilYn~P~ 189 (356)
+. .||++.-.|.
T Consensus 162 ~~~~iPV~vKl~p~ 175 (334)
T PRK07565 162 SAVSIPVAVKLSPY 175 (334)
T ss_pred hccCCcEEEEeCCC
Confidence 65 6999998763
No 28
>PRK15063 isocitrate lyase; Provisional
Probab=97.14 E-value=0.013 Score=58.98 Aligned_cols=127 Identities=18% Similarity=0.146 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE---------ccCcccccCCCHHHHHHHHHHHHHHhC---CCcEEEEecCC--------
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIV---------GGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKVIGNTGS-------- 133 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v---------~GstGE~~~Lt~eEr~~li~~~~~~~~---grvpVi~gvg~-------- 133 (356)
+.....++++.++++|+.||-+ ||..|---..+.+|..+=+.+++.... ...-|++=+-+
T Consensus 159 g~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s 238 (428)
T PRK15063 159 GVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTS 238 (428)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccc
Confidence 3445889999999999999988 666665557899998888888876543 23334454444
Q ss_pred -----------------------CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEEEeC-
Q 018443 134 -----------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP--TIIYNV- 187 (356)
Q Consensus 134 -----------------------~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P--iilYn~- 187 (356)
..++++|++++.+.+ |||.+.+-.. .++.+++.++-+.|....| ++.||.
T Consensus 239 ~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~---~~d~ee~~~fa~~v~~~~P~~~layn~s 314 (428)
T PRK15063 239 DVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETS---TPDLEEARRFAEAIHAKFPGKLLAYNCS 314 (428)
T ss_pred cccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCC---CCCHHHHHHHHHhhcccCccceeecCCC
Confidence 368999999999998 9999987532 2588999888888866567 888985
Q ss_pred CCCC-CCCCCHHHHHHHh
Q 018443 188 PSRT-GQDIPPRVIHTMA 204 (356)
Q Consensus 188 P~~t-G~~ls~~~l~~La 204 (356)
|..+ ...++++.++...
T Consensus 315 PsfnW~~~~~~~~~~~f~ 332 (428)
T PRK15063 315 PSFNWKKNLDDATIAKFQ 332 (428)
T ss_pred CCcccccccCHHHHHHHH
Confidence 5543 2347777765553
No 29
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=97.11 E-value=0.027 Score=54.22 Aligned_cols=140 Identities=15% Similarity=0.199 Sum_probs=92.9
Q ss_pred eeEeeecccCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccC--------cccc--cCCCHHHHHHHHHHHHHHhCC-C
Q 018443 59 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGT--------TGEG--QLMSWDEHIMLIGHTVNCFGA-S 124 (356)
Q Consensus 59 vi~al~TPf~~d---g~ID~~~l~~~v~~li~~Gv~Gl~v~Gs--------tGE~--~~Lt~eEr~~li~~~~~~~~g-r 124 (356)
|.-+.--|...| |==|.....+.|+.+++.|+.|+.+=-. ..++ ...+.+|..+-++.+++...+ +
T Consensus 70 I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d 149 (290)
T TIGR02321 70 IASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRD 149 (290)
T ss_pred HHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCC
Confidence 333444565443 3334446899999999999999988332 2233 456899999999888876432 3
Q ss_pred cEEEEecC----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHH
Q 018443 125 VKVIGNTG----SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 200 (356)
Q Consensus 125 vpVi~gvg----~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l 200 (356)
.-|++=+- ..+.+|+|++++.+.++|||++++..|. .+.+++.+.-+++..-.|+++- |. .+..++.+.+
T Consensus 150 ~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~~~~ei~~~~~~~~~p~pv~~~--~~-~~p~~~~~~l 223 (290)
T TIGR02321 150 FVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---KTPDEILAFVKSWPGKVPLVLV--PT-AYPQLTEADI 223 (290)
T ss_pred EEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---CCHHHHHHHHHhcCCCCCeEEe--cC-CCCCCCHHHH
Confidence 33444332 2357999999999999999999985322 4788888877776433577642 32 2334677767
Q ss_pred HHHh
Q 018443 201 HTMA 204 (356)
Q Consensus 201 ~~La 204 (356)
.+|.
T Consensus 224 ~~lg 227 (290)
T TIGR02321 224 AALS 227 (290)
T ss_pred HHhc
Confidence 6664
No 30
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.07 E-value=0.01 Score=55.65 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC------------------CC
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS------------------NS 135 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~------------------~s 135 (356)
+.+...+.++.+++.|++|+-+=+.. |..+.++.+++. .++|++.++. .+
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---------WHIETLQMLTAA---AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---------HHHHHHHHHHHc---CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 44778899999999999999987753 455555555443 4899999887 34
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCC-CCCCCCCHH
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS-RTGQDIPPR 198 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~-~tG~~ls~~ 198 (356)
.+++|++++.++++|||++++-.+ +.+++.+..+++ ..|++..=.|. ..|.-+...
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~-----~~e~~~~i~~~~--~~P~~~~gag~~~dgq~lv~~ 211 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV-----PVELAKQITEAL--AIPLAGIGAGSGTDGQFLVLA 211 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC-----CHHHHHHHHHhC--CCCEEEEecCcCCCceEEeHH
Confidence 779999999999999999998543 455554433332 26876644443 234444433
No 31
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.16 Score=48.03 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC-------HHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS-------TREAIHATEQG 146 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s-------t~~ai~lar~a 146 (356)
+++-.+..++...+.|++++.. + .-+++....-.+.++|+|+..++.+ -+..+...+.|
T Consensus 41 gl~d~e~~v~~v~~~g~dav~~--~------------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~a 106 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAM--T------------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDA 106 (265)
T ss_pred cccCHHHHHHHHHhcCCCEEEe--c------------HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHH
Confidence 5666788899999999999974 2 3355566555666999999887651 23345556888
Q ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCC----CCCHHHHH---HHh-cC-CCEEEE
Q 018443 147 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQ----DIPPRVIH---TMA-QS-PNLAGV 212 (356)
Q Consensus 147 ~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-----~PiilYn~P~~tG~----~ls~~~l~---~La-~~-pnivGi 212 (356)
..+|||||.+.- |++..++.+.++-+.++.+. .|++++-.|.-.+. +.+++.+. ||+ ++ -.|+=.
T Consensus 107 i~lgadAV~~~V-y~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~ 185 (265)
T COG1830 107 IRLGADAVGATV-YVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT 185 (265)
T ss_pred HhCCCcEEEEEE-ecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee
Confidence 899999999875 44555666666666776553 59999888865555 57777665 555 55 468778
Q ss_pred eecCchhhHh---hhhCCCeEEEecCcch-----h---HhHHHHcCCceeecc
Q 018443 213 KECVGNDRVE---HYTGNGIVVWSGNDDQ-----C---HDARWNHGATGVISV 254 (356)
Q Consensus 213 K~s~~d~~i~---~~~~~~~~v~~G~d~~-----~---l~~~l~~Ga~G~is~ 254 (356)
|++...+.++ ..++-.+. .+|.... + ....+..|+.|.+.|
T Consensus 186 ~ytg~~e~F~~vv~~~~vpVv-iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~G 237 (265)
T COG1830 186 KYTGDPESFRRVVAACGVPVV-IAGGPKTETEREFLEMVTAAIEAGAMGVAVG 237 (265)
T ss_pred cCCCChHHHHHHHHhCCCCEE-EeCCCCCCChHHHHHHHHHHHHccCcchhhh
Confidence 8876554443 33443333 3433221 1 223467888888766
No 32
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.27 E-value=0.084 Score=51.82 Aligned_cols=127 Identities=11% Similarity=0.162 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC-C-------HHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-S-------TREAIHATEQ 145 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~-s-------t~~ai~lar~ 145 (356)
+....+.+++..++.|++++... +-+++.......+++|+|+.+.+. + .+....-.+.
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~--------------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVed 154 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST--------------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVED 154 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC--------------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHH
Confidence 56677889999999999999864 556666544455689999987653 1 2333444788
Q ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCC--------CHHHH---HHHh-cC-C
Q 018443 146 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDI--------PPRVI---HTMA-QS-P 207 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-----~PiilYn~P~~tG~~l--------s~~~l---~~La-~~-p 207 (356)
|.++|||||.+.- |.....+.+.++-+.+++++ +|++++-.|. |..+ .++.+ .+++ ++ .
T Consensus 155 AlrLGAdAV~~tv-y~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpR--G~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 155 ALRLGAVAVGATI-YFGSEESRRQIEEISEAFEEAHELGLATVLWSYLR--NSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred HHHCCCCEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeccc--CcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 9999999998874 34445566677777777664 6999877774 3322 24554 4444 55 5
Q ss_pred CEEEEeecCc
Q 018443 208 NLAGVKECVG 217 (356)
Q Consensus 208 nivGiK~s~~ 217 (356)
.|+=+|++..
T Consensus 232 DIVKv~yp~~ 241 (348)
T PRK09250 232 DIIKQKLPTN 241 (348)
T ss_pred CEEEecCCCC
Confidence 7888888753
No 33
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.07 E-value=0.64 Score=42.76 Aligned_cols=171 Identities=13% Similarity=0.068 Sum_probs=109.2
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
+.-.++++.+- ..|.+...+.++.+++.|++.+=+. |+.++-.+.++...+..+ + +++|+|.
T Consensus 12 l~~~~~iaV~r-------~~~~~~a~~i~~al~~~Gi~~iEit--------l~~~~~~~~I~~l~~~~p-~--~~IGAGT 73 (212)
T PRK05718 12 LRAGPVVPVIV-------INKLEDAVPLAKALVAGGLPVLEVT--------LRTPAALEAIRLIAKEVP-E--ALIGAGT 73 (212)
T ss_pred HHHCCEEEEEE-------cCCHHHHHHHHHHHHHcCCCEEEEe--------cCCccHHHHHHHHHHHCC-C--CEEEEee
Confidence 34466777653 2578999999999999999988543 666788888988887764 3 5667766
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCC-CEEEE
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSP-NLAGV 212 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~p-nivGi 212 (356)
-.+. +.++.|.++||+-++. |.+ + ++++++.++ |++|...|. ++|..+.+..+.. .++-+
T Consensus 74 Vl~~---~~a~~a~~aGA~Fivs--P~~---~-~~vi~~a~~---------~~i~~iPG~-~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 74 VLNP---EQLAQAIEAGAQFIVS--PGL---T-PPLLKAAQE---------GPIPLIPGV-STPSELMLGMELGLRTFKF 134 (212)
T ss_pred ccCH---HHHHHHHHcCCCEEEC--CCC---C-HHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCCCCEEEE
Confidence 5444 7789999999998765 444 3 378887766 666655564 6776666665543 45444
Q ss_pred eecC--chh-hHhhhhC--CCeEE--EecCcchhHhHHHHcCCceeecccccccHHH
Q 018443 213 KECV--GND-RVEHYTG--NGIVV--WSGNDDQCHDARWNHGATGVISVTSNLVPGM 262 (356)
Q Consensus 213 K~s~--~d~-~i~~~~~--~~~~v--~~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~ 262 (356)
-..+ +.. .++.+.. +++.+ -.|-+..-+..++..|+..++. .++++|+.
T Consensus 135 FPa~~~gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 135 FPAEASGGVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred ccchhccCHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 3322 122 2333321 33443 3466544556667888554444 56666643
No 34
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.03 E-value=1.1 Score=42.86 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCC------CCHHHHHHHHHHHHhc--CCeEEE
Q 018443 123 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH--INPYYGK------TSLEGLISHFDSVLSM--GPTIIY 185 (356)
Q Consensus 123 grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv--~pP~y~~------~s~~~l~~y~~~va~~--~PiilY 185 (356)
.+.|+++++...+.++-.+.++.++++|+|++-+ ..|.... .+.+.+.+.++++.+. .||++=
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 3679999999999999999999999999999965 3454322 3456677777777766 577764
No 35
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.94 E-value=0.31 Score=45.21 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
+...+.++.+.+.|.|+|++.||+|= |.++-.++++.+.+ ...+|||.=.|+.+- ..-+||+++
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gv----t~~~~~~~v~~ik~--~~~lPvilfP~~~~~----------is~~aDavf 91 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGV----TEENVDNVVEAIKE--RTDLPVILFPGSPSG----------ISPYADAVF 91 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccc----cHHHHHHHHHHHHh--hcCCCEEEecCChhc----------cCccCCeEE
Confidence 44566777888999999999999995 77888888887776 347999987776421 112789888
Q ss_pred EcC------CCCCCCCHHHHHHHHHHHHhc-CCe--EEEeCCCCC-----C---CCCCHHH---HHHHhc-C--CCEEEE
Q 018443 156 HIN------PYYGKTSLEGLISHFDSVLSM-GPT--IIYNVPSRT-----G---QDIPPRV---IHTMAQ-S--PNLAGV 212 (356)
Q Consensus 156 v~p------P~y~~~s~~~l~~y~~~va~~-~Pi--ilYn~P~~t-----G---~~ls~~~---l~~La~-~--pnivGi 212 (356)
++. |+|.-..|-+-..-+..+-.+ .|. ++.| |..+ + .++..+. ..+|++ + =.++.+
T Consensus 92 f~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~-p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Yl 170 (240)
T COG1646 92 FPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVN-PDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYL 170 (240)
T ss_pred EEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEEC-CCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEE
Confidence 754 667544443323333333333 452 4444 3322 1 2344333 344553 2 247778
Q ss_pred eecCch--h----hHhhhhCCCeEEEecCc----chhHhHHHHcCCceeeccc
Q 018443 213 KECVGN--D----RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVT 255 (356)
Q Consensus 213 K~s~~d--~----~i~~~~~~~~~v~~G~d----~~~l~~~l~~Ga~G~is~~ 255 (356)
-.+++- + .+++.... ..+|.|.. +... ....+|+|-++.|+
T Consensus 171 Eagsga~~Pv~~e~v~~v~~~-~~LivGGGIrs~E~A~-~~a~agAD~IVtG~ 221 (240)
T COG1646 171 EAGSGAGDPVPVEMVSRVLSD-TPLIVGGGIRSPEQAR-EMAEAGADTIVTGT 221 (240)
T ss_pred EecCCCCCCcCHHHHHHhhcc-ceEEEcCCcCCHHHHH-HHHHcCCCEEEECc
Confidence 887764 1 23333222 24444432 2332 22356999887664
No 36
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.88 E-value=0.62 Score=45.17 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=76.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccc------c---------CCCHHHH----HHHHHHHHHHhCCCcEEEEecC------
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEG------Q---------LMSWDEH----IMLIGHTVNCFGASVKVIGNTG------ 132 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~------~---------~Lt~eEr----~~li~~~~~~~~grvpVi~gvg------ 132 (356)
+.+-.+...++|.|||=+.+..|.. + -=|.+.| .++++.+.+.++.++||.+=++
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 3444456667899999888765541 0 1134566 4556666666666677766333
Q ss_pred -CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---------HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH
Q 018443 133 -SNSTREAIHATEQGFAVGMHAALHINPYYGKTS---------LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI 200 (356)
Q Consensus 133 -~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s---------~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l 200 (356)
..+.++++++++.+++.|+|.+-+....+..+. +..-..+.+.+.+. .||+.= |---+++.+
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~------Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV------GGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe------CCCCCHHHH
Confidence 246899999999999999999988776543211 12334555566554 466532 333467777
Q ss_pred HHHhc
Q 018443 201 HTMAQ 205 (356)
Q Consensus 201 ~~La~ 205 (356)
+++.+
T Consensus 297 ~~~l~ 301 (327)
T cd02803 297 EEILA 301 (327)
T ss_pred HHHHH
Confidence 77764
No 37
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.87 E-value=0.1 Score=48.29 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE--ecCCCCHHHHHHHHHHHHHcCCC
Q 018443 75 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 75 ~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~--gvg~~st~~ai~lar~a~~~Gad 152 (356)
.+.+++.++...+.|+|-|.+..++ + .+.++.+++.. ++||++ |++..+.+++++.++.+.+.|++
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~~~~------~----~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTKYTG------D----AESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCC------C----HHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 3555555666667788877664322 1 23344555433 456544 45667899999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHH
Q 018443 153 AALHINPYYGKTSLEGLISHFDSV 176 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~v 176 (356)
++.+..-.|...++.+..+-++++
T Consensus 210 gv~vg~~i~~~~dp~~~~~~~~~~ 233 (235)
T cd00958 210 GVAVGRNIFQRPDPVAMLRAISAV 233 (235)
T ss_pred EEEechhhhcCCCHHHHHHHHHHH
Confidence 999999888888888888877765
No 38
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.80 E-value=0.14 Score=46.94 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-CCH-HHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NST-REAIH 141 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gst----------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~-~st-~~ai~ 141 (356)
|.+.+.+..+.+.+.|++||=++++. |-...-..+.-.++++.+.+.++ +||.+.+.. .+. +++++
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r~~~~~~~~~~~ 142 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWDDEEETLE 142 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEeeccCCchHHHH
Confidence 67889999999999999999887654 11111133444555655555443 567665532 122 48999
Q ss_pred HHHHHHHcCCCEEEEcCC
Q 018443 142 ATEQGFAVGMHAALHINP 159 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP 159 (356)
+++...+.|+|.+.+...
T Consensus 143 ~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 143 LAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHhCCCEEEECCC
Confidence 999999999999987653
No 39
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.79 E-value=0.2 Score=47.98 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTT------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gst------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~ 147 (356)
+.+.+.+.++.+.+.|+|+|-++-++ |..+.-+.+.-.++++.+.+.+ ++||.+-++. +.++..++++.++
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~~-~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLTP-NVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeCC-CchhHHHHHHHHH
Confidence 57889999999999999999886543 4445556666677888777765 6899998864 4568999999999
Q ss_pred HcCCCEEEEcCCC
Q 018443 148 AVGMHAALHINPY 160 (356)
Q Consensus 148 ~~Gadavlv~pP~ 160 (356)
++|+|++.+..-.
T Consensus 177 ~~G~d~i~~~nt~ 189 (296)
T cd04740 177 EAGADGLTLINTL 189 (296)
T ss_pred HcCCCEEEEECCC
Confidence 9999999886543
No 40
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.74 E-value=1.8 Score=41.50 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=48.4
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHHHcC-CCEEEE--cCCCC------CCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018443 124 SVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH--INPYY------GKTSLEGLISHFDSVLSM--GPTIIYNVP 188 (356)
Q Consensus 124 rvpVi~gvg~~st~~ai~lar~a~~~G-adavlv--~pP~y------~~~s~~~l~~y~~~va~~--~PiilYn~P 188 (356)
+.|+++++++++.++-.+.++.++++| +|++-+ ..|.. ...+.+.+.+..++|.+. .||++==.|
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 679999999999999999999999999 999966 12211 223567777778888776 577664333
No 41
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=95.68 E-value=0.32 Score=49.90 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC---CCcEE-EEecCCCCHHH
Q 018443 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKV-IGNTGSNSTRE 138 (356)
Q Consensus 63 l~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~---grvpV-i~gvg~~st~~ 138 (356)
+-|-+.+.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+. |+.++ .+++++.++++
T Consensus 170 igtiiKP~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~e 249 (475)
T CHL00040 170 LGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEE 249 (475)
T ss_pred EEEecccccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHH
Confidence 344455554589999999999999999885521113456677789999988877776542 34444 77888778999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCC-------CCCCHHHHHHHhc
Q 018443 139 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTG-------QDIPPRVIHTMAQ 205 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG-------~~ls~~~l~~La~ 205 (356)
.++.++.+++.|++++|+-+-.++-..-..+ ++.++...+.|.-.|...| ..++..++.+|.+
T Consensus 250 m~~ra~~a~e~G~~~~mv~~~~~G~~al~~l----~~~~~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~KL~R 319 (475)
T CHL00040 250 MYKRAVFARELGVPIVMHDYLTGGFTANTSL----AHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALR 319 (475)
T ss_pred HHHHHHHHHHcCCceEEEeccccccchHHHH----HHHhhhcCceEEeccccccccccCccCCCcHHHHHHHHH
Confidence 9999999999999999887554433332333 3222222333333444333 2466666666653
No 42
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.49 E-value=0.54 Score=47.52 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=102.9
Q ss_pred ccccCCCCCCCCcchh--cccCCccccc-cCcee--EeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccC
Q 018443 30 AAIIPNYHLPMRSFEV--KNRTSAEDIK-ALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL 104 (356)
Q Consensus 30 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~Gvi--~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~ 104 (356)
....-|+.+|-+...- --+++++.++ +.|+. |-+-|-+.+.--+.-+.+.+++..+...|+|=|====.-.....
T Consensus 109 ~irL~D~~lP~~~~~~f~GP~fGi~G~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~ 188 (412)
T TIGR03326 109 GLRLLDFHFPAEFLRHFKGPQFGIEGVREFLGIKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPF 188 (412)
T ss_pred ceEEEEecCCHHHHhcCCCCCCCchhHHHHhCCCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCC
Confidence 3445566666443311 1123333331 33322 33445566654589999999999999999986532223455667
Q ss_pred CCHHHHHHHHHHHHHH----hCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018443 105 MSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG 180 (356)
Q Consensus 105 Lt~eEr~~li~~~~~~----~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~ 180 (356)
...+||...+-.+++. ++.+.-..+++++. +++.++.++.+++.|++++|+-+-.++-.. ++..++.+...
T Consensus 189 ~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~G~~~----l~~l~~~~~~~ 263 (412)
T TIGR03326 189 NRFEERVEKLYKVRDKVEAETGERKEYLANITAP-VREMERRAELVADLGGQYVMVDVVVCGWSA----LQYIRELTEDL 263 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEEEeeccchHH----HHHHHHhhccC
Confidence 7899999888777754 44444457788865 899999999999999999998754443221 23333332233
Q ss_pred CeEEEeCCCCCC-------CCCCHHHHHHHh
Q 018443 181 PTIIYNVPSRTG-------QDIPPRVIHTMA 204 (356)
Q Consensus 181 PiilYn~P~~tG-------~~ls~~~l~~La 204 (356)
.+.|.-.|...| ..++..++.+|.
T Consensus 264 ~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~ 294 (412)
T TIGR03326 264 GLAIHAHRAMHAAFTRNPKHGISMFALAKLY 294 (412)
T ss_pred CeEEEEcCCcccccccCCCCcCcHHHHHHHH
Confidence 344444444433 245655566554
No 43
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.49 E-value=0.53 Score=45.84 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGN--TGSNSTREAI 140 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~Gst----------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~g--vg~~st~~ai 140 (356)
-|.+.+.+-+..+.+.|.++|=++... |....-..+-=.++++.+.+.++.++||.+= +|..+.++++
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 477888888888888999999776433 3333344555566777777766556788764 4544557799
Q ss_pred HHHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEE
Q 018443 141 HATEQGFAVGMHAALHINPY----YGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 212 (356)
Q Consensus 141 ~lar~a~~~Gadavlv~pP~----y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGi 212 (356)
++++.+++.|+|++.+.+-. |..+.- . .++.+++.++ .|| ++| |--.+++...++.+...+-||
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~-~-~~~i~~ik~~~~iPV-i~n-----GdI~t~~da~~~l~~~g~DgV 221 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEDGYRAEHI-N-WQAIGEIRQRLTIPV-IAN-----GEIWDWQSAQQCMAITGCDAV 221 (312)
T ss_pred HHHHHHHhcCCCEEEECCCCCccCCCCCcc-c-HHHHHHHHhhcCCcE-EEe-----CCcCCHHHHHHHHhccCCCEE
Confidence 99999999999999987532 211100 0 1344444444 353 333 334566666665544444333
No 44
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=95.44 E-value=0.4 Score=48.46 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=89.0
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHH----hCCCcEEEEecCCCCHHH
Q 018443 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 138 (356)
Q Consensus 63 l~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~----~~grvpVi~gvg~~st~~ 138 (356)
+-|-+.+.--+.-+.+.+++..+...|+|=|====.-........+||...+-.+++. ++.+.-..+++++.++++
T Consensus 135 ~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~e 214 (414)
T cd08206 135 LGTIVKPKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEE 214 (414)
T ss_pred EEEecccccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHH
Confidence 3444555444889999999999999998855211124456777899999887766654 334444566888877999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCC-------CCCCHHHHHHHh
Q 018443 139 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTG-------QDIPPRVIHTMA 204 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG-------~~ls~~~l~~La 204 (356)
.++.++.+++.|++++|+-+-.++-..-..+.+++. ...+.|.-.|...| ..++..++.+|.
T Consensus 215 m~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~----~~~l~ih~HrA~~ga~~~~~~~Gis~~vl~kl~ 283 (414)
T cd08206 215 MIKRAEFAKELGSVIVMVDGVTAGWTAIQSARRWCP----DNGLALHAHRAGHAAFTRQKNHGISMRVLAKLA 283 (414)
T ss_pred HHHHHHHHHHhCCcEEEEeeecccHHHHHHHHHhcc----ccCeEEEEccccceecccCCCCcCcHHHHHHHH
Confidence 999999999999999998765443322222222222 22344444444443 245655566554
No 45
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.40 E-value=2.1 Score=39.14 Aligned_cols=182 Identities=12% Similarity=0.040 Sum_probs=95.4
Q ss_pred CceeEeeecccCCCCCCCH-HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC-C-
Q 018443 57 LRLITAIKTPYLPDGRFDL-EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG-S- 133 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~ID~-~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg-~- 133 (356)
.|++.-.-+- +++-|+. +...++++.+.+.|+.|+-+.+ .+.++.+.+.+ .+|++.=+. .
T Consensus 5 ~~~~~~~~~~--~~~~~~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~--~~Pil~~~~~d~ 67 (221)
T PRK01130 5 GGLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVV--DVPIIGIIKRDY 67 (221)
T ss_pred CCEEEEecCC--CCCCCCCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhC--CCCEEEEEecCC
Confidence 4555544433 4555655 4578899999999999998631 34555555543 568752111 0
Q ss_pred ----CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHh-c-CCeEEEeCCCCCCCCCCHHHHHHHhcC-
Q 018443 134 ----NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS-M-GPTIIYNVPSRTGQDIPPRVIHTMAQS- 206 (356)
Q Consensus 134 ----~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~-~-~PiilYn~P~~tG~~ls~~~l~~La~~- 206 (356)
.-.....+.++.+.++|||.+++..|.-..++.+++.+..+.+.+ . .|++.- ..+.+.+.++.+.
T Consensus 68 ~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~--------v~t~ee~~~a~~~G 139 (221)
T PRK01130 68 PDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD--------CSTLEEGLAAQKLG 139 (221)
T ss_pred CCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe--------CCCHHHHHHHHHcC
Confidence 000012356789999999988877665433322344444444444 3 565532 1255666666543
Q ss_pred CCEEEEe----------ecCchh----hHhhhhCCCeEEEecCc-chhHhHHHHcCCceeecccccccHHHH
Q 018443 207 PNLAGVK----------ECVGND----RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTSNLVPGMM 263 (356)
Q Consensus 207 pnivGiK----------~s~~d~----~i~~~~~~~~~v~~G~d-~~~l~~~l~~Ga~G~is~~~n~~P~~~ 263 (356)
..++++- ....+. +++...+-.+..-.|-. ..-+...+..|++|++.|.+-+-|+..
T Consensus 140 ~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~ 211 (221)
T PRK01130 140 FDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEI 211 (221)
T ss_pred CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHH
Confidence 2333321 011111 22222222223333442 122234468999999988765545433
No 46
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.38 E-value=0.14 Score=49.23 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEcc-----Cc-ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNG-AEGMIVGG-----TT-GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 146 (356)
Q Consensus 74 D~~~l~~~v~~li~~G-v~Gl~v~G-----st-GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a 146 (356)
|.+.+.+.++.+.+.| +|+|=++. .. |+....+.+.-.++++.+.+.+ ++||++=++. +.++.+++++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~-~~~~~~~~a~~l 178 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP-NVTDIVEIAKAA 178 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC-CchhHHHHHHHH
Confidence 6889999999999998 99997743 22 5666667788888888888766 6899998874 466999999999
Q ss_pred HHcCCCEEEEcCC
Q 018443 147 FAVGMHAALHINP 159 (356)
Q Consensus 147 ~~~Gadavlv~pP 159 (356)
+++|+|++.+..-
T Consensus 179 ~~~G~d~i~~~nt 191 (301)
T PRK07259 179 EEAGADGLSLINT 191 (301)
T ss_pred HHcCCCEEEEEcc
Confidence 9999999987653
No 47
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=95.35 E-value=0.9 Score=42.11 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=92.3
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
.+.++.+.+.|.|+|+|.||+|. |.+.-.++++.+.+. .+||+.=.|+.+ ...-+||++++..
T Consensus 17 ~~~~~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~~---~lPvilfp~~~~----------~i~~~aDa~l~~s 79 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGSQGV----TYEKTDTLIEALRRY---GLPIILFPSNPT----------NVSRDADALFFPS 79 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcc----cHHHHHHHHHHHhcc---CCCEEEeCCCcc----------ccCcCCCEEEEEE
Confidence 34777888999999999999997 667666677666642 389987665432 1225699998764
Q ss_pred ------CCCCCCCHHHHHHHHHHHHhc-CCe--EEEeCCCCCC-------CCCCHHH---HHHHh-c-CC-CEEEEeecC
Q 018443 159 ------PYYGKTSLEGLISHFDSVLSM-GPT--IIYNVPSRTG-------QDIPPRV---IHTMA-Q-SP-NLAGVKECV 216 (356)
Q Consensus 159 ------P~y~~~s~~~l~~y~~~va~~-~Pi--ilYn~P~~tG-------~~ls~~~---l~~La-~-~p-nivGiK~s~ 216 (356)
|+|.-..+-+...-|.....+ .|. ++-|.-...+ .+++.+. ..+|+ + .. .++.+-.++
T Consensus 80 vlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs 159 (223)
T TIGR01768 80 VLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGS 159 (223)
T ss_pred eecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 666433333333333433333 562 3344322111 1133222 23444 3 22 477777776
Q ss_pred ch-----h----hHhhhhCCCeEEEecCc---chhHhHHHHcCCceeeccccccc-HHHHHH
Q 018443 217 GN-----D----RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISVTSNLV-PGMMRE 265 (356)
Q Consensus 217 ~d-----~----~i~~~~~~~~~v~~G~d---~~~l~~~l~~Ga~G~is~~~n~~-P~~~~~ 265 (356)
+- . ++++..+ +..++.|.. ..-....+.+|+|+++.|+.-+- |+.+.+
T Consensus 160 ~~g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~ 220 (223)
T TIGR01768 160 GAPEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALE 220 (223)
T ss_pred CCCCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHH
Confidence 53 1 1233331 344444432 11223345679999998765432 444443
No 48
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.34 E-value=0.67 Score=46.95 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=87.8
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEEecCCCCHHHH
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREA 139 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~gvg~~st~~a 139 (356)
-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+..+++.+ +.++-..+++++ ++++.
T Consensus 164 gtiiKPklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em 242 (424)
T cd08208 164 FGVIKPNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRL 242 (424)
T ss_pred eeeecccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHH
Confidence 4445555458999999999999999988542111345666778899998776666543 334444568887 69999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCC-------CCCCHHHHHHHhc
Q 018443 140 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTG-------QDIPPRVIHTMAQ 205 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG-------~~ls~~~l~~La~ 205 (356)
+++++.++++|++++|+-+-.++-.. .+.+++..++.|.-.|...| ..++..++.+|.+
T Consensus 243 ~~ra~~a~~~G~~~vmv~~~~~G~~a-------l~~L~~~~~l~ihaHra~~ga~~r~~~~Gis~~vl~Kl~R 308 (424)
T cd08208 243 MELHDVAVRNGANALLINAMPVGLSA-------VRMLRKHAQVPLIAHFPFIASFSRLEKYGIHSRVMTKLQR 308 (424)
T ss_pred HHHHHHHHHhCCCEEEEeeecccHHH-------HHHHHhcCCCeEEeccCccccccCCCCCCCcHHHHHHHHH
Confidence 99999999999999998755443222 33444443343343343332 2466666666653
No 49
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.25 E-value=0.81 Score=43.53 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=94.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC-------CHHHHHHHHHHHHHcC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-------STREAIHATEQGFAVG 150 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~-------st~~ai~lar~a~~~G 150 (356)
+...++.+.+ |++++++. +-+++...... .++|+|+.+++. ..+..+--.++|.++|
T Consensus 44 ~~~~~~~i~~-~~da~~~~--------------~G~~~~~~~~~-~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlG 107 (264)
T PRK08227 44 IDINIAPLFP-YADVLMCT--------------RGILRSVVPPA-TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLN 107 (264)
T ss_pred hHHHHHHHhh-cCCEEEeC--------------hhHHHhccccc-CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCC
Confidence 4556777777 89999864 44555533333 467899987652 2344455578899999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHHH---HHHh-cC-CCEEEEeecCch-h
Q 018443 151 MHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRVI---HTMA-QS-PNLAGVKECVGN-D 219 (356)
Q Consensus 151 adavlv~pP~y~~~s~~~l~~y~~~va~~-----~PiilYn~P~~tG~~ls~~~l---~~La-~~-pnivGiK~s~~d-~ 219 (356)
||||.+.- |.....+.+.++.+.+|+++ +|++.. .|......=+++.+ .+++ ++ ..|+=++++... .
T Consensus 108 AdAV~~~v-~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~-~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~ 185 (264)
T PRK08227 108 ACAVAAQV-FIGSEYEHQSIKNIIQLVDAGLRYGMPVMAV-TAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFE 185 (264)
T ss_pred CCEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEE-ecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHH
Confidence 99998874 34455667788778888764 698872 25322222234433 4555 55 478888887511 2
Q ss_pred hHhhhhCCCeEEEecCcc----hh---HhHHHHcCCceeecc
Q 018443 220 RVEHYTGNGIVVWSGNDD----QC---HDARWNHGATGVISV 254 (356)
Q Consensus 220 ~i~~~~~~~~~v~~G~d~----~~---l~~~l~~Ga~G~is~ 254 (356)
++.+.++-.+- +.|... .+ ....+..|+.|+..|
T Consensus 186 ~vv~a~~vPVv-iaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 186 RITAGCPVPIV-IAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred HHHHcCCCcEE-EeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 33333332333 444322 11 122467899998766
No 50
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.23 E-value=0.098 Score=50.46 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.+..+.+.|+++|.+.|+.|....-. .--.+.+..+.+.+.+++|||+.=|=.+..++++.. .+|||+|++..|+
T Consensus 185 ~a~~a~~~G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal----~lGAd~V~ig~~~ 259 (299)
T cd02809 185 DALRAVDAGADGIVVSNHGGRQLDGA-PATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL----ALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHCCCCEEEEcCCCCCCCCCC-cCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH----HcCCCEEEEcHHH
Confidence 35667789999999988777532111 112344555556666679988754444555554433 4899999999997
Q ss_pred CCC---CCHHHHHHHHHHHHhc
Q 018443 161 YGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 161 y~~---~s~~~l~~y~~~va~~ 179 (356)
.+. ..++++.++++.+.+.
T Consensus 260 l~~~~~~g~~~v~~~i~~l~~e 281 (299)
T cd02809 260 LYGLAAGGEAGVAHVLEILRDE 281 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 654 3567787787777664
No 51
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=95.16 E-value=0.68 Score=46.78 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=73.4
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEEecCCCCHHH
Q 018443 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTRE 138 (356)
Q Consensus 63 l~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~gvg~~st~~ 138 (356)
+-|-+.+.--+..+.+.+++..+...|+|=+====.-........+||...+..+++.+ +.++-..+++++. +++
T Consensus 134 ~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~e 212 (412)
T cd08213 134 LGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VRE 212 (412)
T ss_pred EEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HHH
Confidence 34555665558999999999999999988552111334566778999998887776643 3344456788875 999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 139 AIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
.+++++.+++.|++++|+-+-.++
T Consensus 213 m~~ra~~a~e~G~~~~mv~~~~~G 236 (412)
T cd08213 213 MERRAELVADLGGKYVMIDVVVAG 236 (412)
T ss_pred HHHHHHHHHHhCCCeEEeeccccC
Confidence 999999999999999998754443
No 52
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.11 E-value=0.68 Score=46.72 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=73.8
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEEecCCCCHHH
Q 018443 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTRE 138 (356)
Q Consensus 63 l~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~gvg~~st~~ 138 (356)
+-|-+.+.--+.-+.+.+++..+...|+|-|====.-++......+||...+-.+++.+ +.++-..+++++. +++
T Consensus 146 igtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~e 224 (406)
T cd08207 146 IGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-IDE 224 (406)
T ss_pred EEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHH
Confidence 34445555458999999999999999998653111345666778999988777766644 3344456788875 999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 139 AIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
.++.++.+++.|++++|+-+-.++
T Consensus 225 m~~ra~~~~~~G~~~~mv~~~~~G 248 (406)
T cd08207 225 MRRNHDLVVEAGGTCVMVSLNSVG 248 (406)
T ss_pred HHHHHHHHHHhCCCeEEEeccccc
Confidence 999999999999999998765443
No 53
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=95.05 E-value=0.97 Score=46.40 Aligned_cols=175 Identities=10% Similarity=0.089 Sum_probs=103.8
Q ss_pred CCCcccccCCCCCCCCcchh--cccCCccccc-cCcee--EeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc
Q 018443 26 RPPQAAIIPNYHLPMRSFEV--KNRTSAEDIK-ALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG 100 (356)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~Gvi--~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstG 100 (356)
+--.....-|+.+|=+...- --+++.+.++ +.|+. |-+-|-+.+.--+..+.+.+++..+...|+|=|====.-+
T Consensus 121 ~~~~~irL~Dl~lP~~~~~~F~GP~fGi~GiR~~lgv~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~ 200 (468)
T PRK04208 121 KAVKALRLEDIRFPVAYVKTFKGPPFGIQVERERLDKYGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLN 200 (468)
T ss_pred ccccceEEEEecCCHHHHhcCCCCCCCchhHHHHhCCCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCC
Confidence 33345556677776544421 1112333221 22221 2233444554458999999999999999988663222345
Q ss_pred cccCCCHHHHHHHHHHHHHH----hCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 018443 101 EGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV 176 (356)
Q Consensus 101 E~~~Lt~eEr~~li~~~~~~----~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~v 176 (356)
.......+||...+-.+++. ++.+.-..+++++.++++.++.++.+.+.|++++|+-+-.++ .+- ....++.
T Consensus 201 ~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~~G-~~~---l~~l~~~ 276 (468)
T PRK04208 201 SQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVTAG-WTA---LQSLREW 276 (468)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeccccc-cHH---HHHHHHh
Confidence 56677899999877766554 334444577998877999999999999999999998754443 221 3333333
Q ss_pred HhcCCeEEEeCCCCCC-------CCCCHHHHHHHh
Q 018443 177 LSMGPTIIYNVPSRTG-------QDIPPRVIHTMA 204 (356)
Q Consensus 177 a~~~PiilYn~P~~tG-------~~ls~~~l~~La 204 (356)
+....+.|.-.|...| ..++..++.+|.
T Consensus 277 ~~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~Kl~ 311 (468)
T PRK04208 277 CRDNGLALHAHRAMHAAFTRNPNHGISFRVLAKLL 311 (468)
T ss_pred hhcCCcEEEecCCcccccccCcCCCCCHHHHHHHH
Confidence 3333344433343333 245655565554
No 54
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.98 E-value=0.17 Score=50.03 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
..++.+.+.|+++|++.++-|....=...- .+.+..+++.+++++|||+.=|=.+-.+.++. -.+|||+|++-.|
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~-~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~ka----LalGA~~V~iGr~ 307 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPAS-FDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKA----LASGADAVAVGRP 307 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchH-HHHHHHHHHHhCCCCeEEEECCCCCHHHHHHH----HHcCCCEEEECHH
Confidence 455677889999999977766442212222 23455566667778999986555555555543 3389999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018443 160 YYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 160 ~y~~---~s~~~l~~y~~~va~~ 179 (356)
+.+. ..++++..+++.+.++
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~E 330 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKE 330 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH
Confidence 8654 4678888888887765
No 55
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.96 E-value=0.27 Score=46.84 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccccc-----CCCHHHHHHHHHHHHHHhCCCcEEEEecCC-CCHHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGF 147 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~-----~Lt~eEr~~li~~~~~~~~grvpVi~gvg~-~st~~ai~lar~a~ 147 (356)
+.+.+.+.++.+.+.|+++|-++.++-... ..+.+.-.++++.+.+.+ ++||++.++. .+.++..++++.++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 667888999999999999998876532211 224455567777777665 6899998764 35668999999999
Q ss_pred HcCCCEEEEcCC
Q 018443 148 AVGMHAALHINP 159 (356)
Q Consensus 148 ~~Gadavlv~pP 159 (356)
++|+|++.+..-
T Consensus 187 ~~Gad~i~~~~~ 198 (289)
T cd02810 187 RAGADGLTAINT 198 (289)
T ss_pred HcCCCEEEEEcc
Confidence 999999998753
No 56
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.81 E-value=0.21 Score=47.28 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=67.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-----------
Q 018443 65 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS----------- 133 (356)
Q Consensus 65 TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~----------- 133 (356)
+||..-+.=..+++++-++.+.+.|++|+-+=|+ +|..+.++.++ ..++||+.++|-
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~---------~~~~~~I~al~---~agipV~gHiGL~pq~~~~~gg~ 147 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG---------AEVAETIRALV---DAGIPVMGHIGLTPQSVNQLGGY 147 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHH---HcCCCeeccccccceeeeccCCc
Confidence 4775444334444555555555599999999775 35555555555 456787744431
Q ss_pred -------CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE-eCCCCCCCCC
Q 018443 134 -------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY-NVPSRTGQDI 195 (356)
Q Consensus 134 -------~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilY-n~P~~tG~~l 195 (356)
...+++++.++..+++|||++.+-.+ +.+. .++|.++ .|+|=. -=|...|.-+
T Consensus 148 ~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v-----~~~~----~~~i~~~v~iP~igiGaG~~~dgqvl 210 (254)
T cd06557 148 KVQGKTEEEAERLLEDALALEEAGAFALVLECV-----PAEL----AKEITEALSIPTIGIGAGPDCDGQVL 210 (254)
T ss_pred eeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-----CHHH----HHHHHHhCCCCEEEeccCCCCCceee
Confidence 12578999999999999999998654 2232 3455555 476533 2244444443
No 57
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=94.78 E-value=0.8 Score=45.58 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=84.4
Q ss_pred CcccccCCCCCCCCcchh--cccCCccccc-cCcee--EeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccc
Q 018443 28 PQAAIIPNYHLPMRSFEV--KNRTSAEDIK-ALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG 102 (356)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~Gvi--~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~ 102 (356)
-.....-|+.+|-....- --++..+.++ +.|+. |-+-|-+.+.--+..+.+.+++..+...|+|=|====.-...
T Consensus 90 ~~~irL~D~~~P~~~~~~F~GP~fGi~G~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q 169 (366)
T cd08148 90 LEAVRLEDLEFPEEYKKLFPGPKFGIDGIRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQ 169 (366)
T ss_pred ccceEEEEeeCCHHHHhcCCCCCCCchhHHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCC
Confidence 344556667666444321 1123333221 22221 234455556634889999999999999998855211134556
Q ss_pred cCCCHHHHHHHHHHHHH----HhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 103 QLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 103 ~~Lt~eEr~~li~~~~~----~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
.....+||...+-.+++ .++.+.-..+++++ +++|.++.++.+++.|++++|+-+-.+
T Consensus 170 ~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~ 231 (366)
T cd08148 170 PFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTA-GTFEIIERAERALELGANMLMVDVLTA 231 (366)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 67789999666555554 34444445678886 569999999999999999999875444
No 58
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.77 E-value=1.4 Score=42.25 Aligned_cols=142 Identities=22% Similarity=0.195 Sum_probs=88.4
Q ss_pred cCceeEeeecccCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccCcc--------cccCCCHHHHHHHHHHHHHHhCCC
Q 018443 56 ALRLITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGTTG--------EGQLMSWDEHIMLIGHTVNCFGAS 124 (356)
Q Consensus 56 ~~Gvi~al~TPf~~d---g~ID~~~l~~~v~~li~~Gv~Gl~v~GstG--------E~~~Lt~eEr~~li~~~~~~~~gr 124 (356)
.+.|..+.-.|..-| |==+.....+.|..+++.|+.|+-+=-..+ --...+.+|-.+=++++++...+.
T Consensus 70 vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~ 149 (289)
T COG2513 70 ARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDP 149 (289)
T ss_pred HHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCC
Confidence 344555555565433 323377888999999999999998844444 256678999999999999877542
Q ss_pred -cEEEEec---CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHH
Q 018443 125 -VKVIGNT---GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 200 (356)
Q Consensus 125 -vpVi~gv---g~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l 200 (356)
.-+++=+ +...++++|++++.+.++|||++..- .. .+.+++.++-+++.--+|+-+=-.+. | ..+|.+.+
T Consensus 150 ~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~--al--~~~e~i~~f~~av~~pl~~N~t~~g~-t-p~~~~~~L 223 (289)
T COG2513 150 DFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPE--AL--TDLEEIRAFAEAVPVPLPANITEFGK-T-PLLTVAEL 223 (289)
T ss_pred CeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccc--cC--CCHHHHHHHHHhcCCCeeeEeeccCC-C-CCcCHHHH
Confidence 2233322 33359999999999999999998743 22 24555555444444112333322221 1 23555555
Q ss_pred HHH
Q 018443 201 HTM 203 (356)
Q Consensus 201 ~~L 203 (356)
+++
T Consensus 224 ~~~ 226 (289)
T COG2513 224 AEL 226 (289)
T ss_pred Hhc
Confidence 554
No 59
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.76 E-value=0.17 Score=50.40 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=66.2
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
.-++.+++.|+++|.|.++-|....=.... .+.+..+++.+++++|||+.=|=.+-.+.++ |..+|||+|++.-|
T Consensus 240 eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~-~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~K----aLalGAd~V~igR~ 314 (367)
T TIGR02708 240 EDADRALKAGASGIWVTNHGGRQLDGGPAA-FDSLQEVAEAVDKRVPIVFDSGVRRGQHVFK----ALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHcCcCEEEECCcCccCCCCCCcH-HHHHHHHHHHhCCCCcEEeeCCcCCHHHHHH----HHHcCCCEEEEcHH
Confidence 344567789999999999888654433333 2344556666778899998655444444442 33499999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018443 160 YYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 160 ~y~~---~s~~~l~~y~~~va~~ 179 (356)
+.+. ..++++...++.+.++
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~E 337 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKE 337 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 7543 5788998888877654
No 60
>PRK06852 aldolase; Validated
Probab=94.58 E-value=2.5 Score=41.01 Aligned_cols=165 Identities=14% Similarity=0.119 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC----------CHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN----------STREAIHAT 143 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~----------st~~ai~la 143 (356)
+.+-.+.+++..++.|+++++.. +-+++...... .++|+|+.+++. .....+--.
T Consensus 57 gl~dp~~~i~~~~~~g~dav~~~--------------~G~l~~~~~~~-~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sV 121 (304)
T PRK06852 57 DDADPEHLFRIASKAKIGVFATQ--------------LGLIARYGMDY-PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDV 121 (304)
T ss_pred ccCCHHHHHHHHHhcCCCEEEeC--------------HHHHHhhcccc-CCCcEEEEECCCCCcCCcccCCccccceecH
Confidence 55567788999999999999864 45555543333 478999987652 111233346
Q ss_pred HHHHHcC------CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCC--CCCCHHHHH---HHh-cC
Q 018443 144 EQGFAVG------MHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTG--QDIPPRVIH---TMA-QS 206 (356)
Q Consensus 144 r~a~~~G------adavlv~pP~y~~~s~~~l~~y~~~va~~-----~PiilYn~P~~tG--~~ls~~~l~---~La-~~ 206 (356)
+.|.++| ||||.+.- |.....+.+.++...+|+++ +|+++.=.|.--. ..-.++++. +++ ++
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v-~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTI-YLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHhcCCccCCCceEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 7788877 88998764 33445566777777887764 6998766664211 123445554 444 55
Q ss_pred -CCEEEEeecC----ch-hhHh---hhhCCCeEEEecCcch----hH---hHHHH-cCCceeecc
Q 018443 207 -PNLAGVKECV----GN-DRVE---HYTGNGIVVWSGNDDQ----CH---DARWN-HGATGVISV 254 (356)
Q Consensus 207 -pnivGiK~s~----~d-~~i~---~~~~~~~~v~~G~d~~----~l---~~~l~-~Ga~G~is~ 254 (356)
..|+=+|++. ++ +.+. +.+.+--.|+.|.... ++ ...+. .|+.|++.|
T Consensus 201 GADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 201 GADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred cCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 4788888873 33 3333 3332322455654331 21 12345 788998766
No 61
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.58 E-value=0.28 Score=46.59 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=55.1
Q ss_pred cccCCCCCCCHHH-HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC---------
Q 018443 65 TPYLPDGRFDLEA-YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN--------- 134 (356)
Q Consensus 65 TPf~~dg~ID~~~-l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~--------- 134 (356)
+||.. -..+.+. +++-++.+.+.|++|+-+=|+ +|..+.++.++ ..++||+.++|-+
T Consensus 83 ~pfg~-y~~~~~~av~~a~r~~~~aGa~aVkiEdg---------~~~~~~I~al~---~agIpV~gHiGL~pq~~~~~gg 149 (264)
T PRK00311 83 MPFGS-YQASPEQALRNAGRLMKEAGAHAVKLEGG---------EEVAETIKRLV---ERGIPVMGHLGLTPQSVNVLGG 149 (264)
T ss_pred CCCCC-ccCCHHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHH---HCCCCEeeeecccceeecccCC
Confidence 57742 2345555 444454444499999998674 35555565555 4578988655422
Q ss_pred ---------CHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 135 ---------STREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 135 ---------st~~ai~lar~a~~~Gadavlv~pP 159 (356)
+.+++++.++..+++|||++++-.+
T Consensus 150 ~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v 183 (264)
T PRK00311 150 YKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV 183 (264)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 2458899999999999999988654
No 62
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.56 E-value=0.14 Score=49.38 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccc--------------------cCCCHH----HHHHHHHHHHHH
Q 018443 65 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG--------------------QLMSWD----EHIMLIGHTVNC 120 (356)
Q Consensus 65 TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~--------------------~~Lt~e----Er~~li~~~~~~ 120 (356)
.|+.-.-+.|.+.+..+++.+.+.|++||.+.-|+..- .-+|-. --.+.+..+.+.
T Consensus 169 ~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~ 248 (299)
T cd02940 169 IPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA 248 (299)
T ss_pred CCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh
Confidence 34443444567778899999999999999865544331 112211 115667777777
Q ss_pred hCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 121 FGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 121 ~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
+++++|||+.=|=.+.+++++.. .+|||+|++..-.++
T Consensus 249 ~~~~ipIig~GGI~~~~da~~~l----~aGA~~V~i~ta~~~ 286 (299)
T cd02940 249 PEPGLPISGIGGIESWEDAAEFL----LLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCCcEEEECCCCCHHHHHHHH----HcCCChheEceeecc
Confidence 76789998866667788888866 399999999887655
No 63
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.51 E-value=3.8 Score=37.53 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
+.+.+++..+.+.|+|+|++.||+|= |.+.-.++++.+.+.. ++||+.=.|+.+. ..-+||+++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gv----t~~~~~~~v~~ik~~~--~lPvilfp~~~~~----------i~~~aD~~~ 74 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGI----VESNLDQTVKKIKKIT--NLPVILFPGNVNG----------LSRYADAVF 74 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCC----CHHHHHHHHHHHHhhc--CCCEEEECCCccc----------cCcCCCEEE
Confidence 66777888999999999999999765 7777778888877643 7899886655321 225699998
Q ss_pred EcC
Q 018443 156 HIN 158 (356)
Q Consensus 156 v~p 158 (356)
++.
T Consensus 75 ~~s 77 (205)
T TIGR01769 75 FMS 77 (205)
T ss_pred EEE
Confidence 764
No 64
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.48 E-value=0.27 Score=47.30 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHC--CCCEEEEccCcccc------------------cCCC----HHHHHHHHHHHHHHhCCCcEEEE
Q 018443 74 DLEAYDDLVNMQIVN--GAEGMIVGGTTGEG------------------QLMS----WDEHIMLIGHTVNCFGASVKVIG 129 (356)
Q Consensus 74 D~~~l~~~v~~li~~--Gv~Gl~v~GstGE~------------------~~Lt----~eEr~~li~~~~~~~~grvpVi~ 129 (356)
|.+.+.++++.+.+. |++||.+.-|++-. --+| ...-.+.+..+.+.+++++|||+
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig 248 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIG 248 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEE
Confidence 667788899988888 99999875444321 1122 22233555666666666799887
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 130 NTGSNSTREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 130 gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
.=|=.+.++++++.+ +|||+|++..-.++
T Consensus 249 ~GGI~s~~da~e~l~----aGA~~Vqv~ta~~~ 277 (294)
T cd04741 249 VGGVLDGRGAFRMRL----AGASAVQVGTALGK 277 (294)
T ss_pred eCCCCCHHHHHHHHH----cCCCceeEchhhhh
Confidence 666667888888874 69999999988664
No 65
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.46 E-value=0.22 Score=46.26 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC---CcEEEEec--CCCCHHHH-----HHHHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNT--GSNSTREA-----IHATEQ 145 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g---rvpVi~gv--g~~st~~a-----i~lar~ 145 (356)
+.++++++..++.|++++++.-.. +..+.+...+ +++++++. |...++.- +.-+++
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p~~--------------~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~ 84 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTPGY--------------VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEE 84 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGG--------------HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEECHHH--------------HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHH
Confidence 488999999999999999886543 3344455555 78889887 45566667 799999
Q ss_pred HHHcCCCEEEEcCCC--CCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCC----CCHHHHHHHhc---CCCEEE
Q 018443 146 GFAVGMHAALHINPY--YGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQD----IPPRVIHTMAQ---SPNLAG 211 (356)
Q Consensus 146 a~~~Gadavlv~pP~--y~~~s~~~l~~y~~~va~~-----~PiilYn~P~~tG~~----ls~~~l~~La~---~pnivG 211 (356)
|.+.|||++-++.++ ......+...+-.+++.+. +|+|+--.| ++.. ..++.+...++ .-+.--
T Consensus 85 A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l--~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 85 AIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL--RGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE--CHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec--CchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 999999999888664 2334466677777777664 588877433 2222 14455555542 345556
Q ss_pred EeecCc
Q 018443 212 VKECVG 217 (356)
Q Consensus 212 iK~s~~ 217 (356)
+|-+.+
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 898887
No 66
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.43 E-value=0.44 Score=46.24 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc----------cCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec--CC-CCHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GS-NSTREA 139 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~----------GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv--g~-~st~~a 139 (356)
=|.+.+.+-++.+.+.|+++|=+| +..|.+..-+.+.=.++++.+++.++ +||-+-+ |- .+.+++
T Consensus 63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHH
T ss_pred ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhHH
Confidence 478889999998888899998665 45888888889988999999998775 5665433 33 257889
Q ss_pred HHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCe-EEEeCCCCCCCCCCHHHHHHHhcCCCEEEEee
Q 018443 140 IHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPT-IIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 214 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y-~~~s~~~l~~y~~~va~~~Pi-ilYn~P~~tG~~ls~~~l~~La~~pnivGiK~ 214 (356)
+++++..++.|++++.|.+=.- ...+...=.+++..+.+..++ +++| |--.+++.+.++.+..++-|+=.
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~N-----GdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIAN-----GDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEE-----SS--SHHHHHHHCCCH-SSEEEE
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEc-----CccCCHHHHHHHHHhcCCcEEEE
Confidence 9999999999999999887421 111112234555666666554 4565 55567777777765444444433
No 67
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.35 E-value=1.7 Score=38.19 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec--CCC-CHHHHHHHHHHHHHc
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GSN-STREAIHATEQGFAV 149 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv--g~~-st~~ai~lar~a~~~ 149 (356)
...+...+.+++..+.|++++.+....+-..+-+.++-.+.++.+++.++..+|+++-. +.. +.++..++++.+++.
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA 141 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56889999999999999999998766543222236777777777777653468987644 223 577888888888999
Q ss_pred CCCEEEEcCCCC
Q 018443 150 GMHAALHINPYY 161 (356)
Q Consensus 150 Gadavlv~pP~y 161 (356)
|++++=...+++
T Consensus 142 g~~~iK~~~~~~ 153 (201)
T cd00945 142 GADFIKTSTGFG 153 (201)
T ss_pred CCCEEEeCCCCC
Confidence 999998776544
No 68
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.35 E-value=2 Score=39.00 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCC-cEE--EEec--CCCCHHHHHHHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKV--IGNT--GSNSTREAIHATEQGF 147 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~gr-vpV--i~gv--g~~st~~ai~lar~a~ 147 (356)
.-.+.++++++..++.|++++++. ...++.+.+...+. +.+ .+|. |...++.-+.-+++|.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~--------------p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVN--------------PCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc--------------HHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 367889999999999999999875 33444455544432 222 2221 3345677777799999
Q ss_pred HcCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCeE-EEeCCCCCCCCCCHHHHHHHhc---CCCEEEEeecCc
Q 018443 148 AVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPTI-IYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 217 (356)
Q Consensus 148 ~~Gadavlv~pP~y-~-~~s~~~l~~y~~~va~~---~Pii-lYn~P~~tG~~ls~~~l~~La~---~pnivGiK~s~~ 217 (356)
+.|||++-+..++- . ....+.+.+...++.+. .|+. ++..+. ++++.+.+.++ --+.-.||-++|
T Consensus 80 ~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-----l~~~~i~~a~ria~e~GaD~IKTsTG 153 (203)
T cd00959 80 ADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----LTDEEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred HcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 99999998887752 2 34557788888888876 4653 455432 45677766653 345666888755
No 69
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=94.32 E-value=0.57 Score=44.86 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=67.1
Q ss_pred HHHHHHHCCCCEEEEccCcccccC-----CCHHHHHHHHHHHHHHhCC-CcEEEEecC------CCCHHHHHHHHHHHHH
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEGQL-----MSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGFA 148 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~~~-----Lt~eEr~~li~~~~~~~~g-rvpVi~gvg------~~st~~ai~lar~a~~ 148 (356)
-++..++.|++.+-+..+++|.+. .|.+|-.+.+..+++.++. ...|.+++. ..+.+..+++++.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 466677788888888888877665 5777777777777665542 345555544 2367778888888888
Q ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 149 VGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 149 ~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+|+|.+.+. =..+..++.++.++++.+.+.
T Consensus 159 ~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 159 LPIKRIMLP-DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred cCCCEEEec-CCCCCCCHHHHHHHHHHHHhh
Confidence 888876554 345556777777777777654
No 70
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=94.29 E-value=4.9 Score=37.96 Aligned_cols=176 Identities=18% Similarity=0.227 Sum_probs=101.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccc----------------ccCCCHHHHHHHHHHHHHHhCCCcEEEE
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNCFGASVKVIG 129 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE----------------~~~Lt~eEr~~li~~~~~~~~grvpVi~ 129 (356)
||---|.-|.+...+.++.+.+.|+|-|=+.--.+. -.-+|.+.-.++++.+.+. .-++|++
T Consensus 14 ~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~-~~~~plv- 91 (256)
T TIGR00262 14 PFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQK-HPNIPIG- 91 (256)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEE-
Confidence 333468889999999999999999999865443321 1123444444555544432 1257865
Q ss_pred ecCCCCH--H-HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 130 NTGSNST--R-EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 130 gvg~~st--~-~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
.-+-.+. + -.-++.+.++++|+|++++.. - ..++..++.+.+.+. ...++--.|. -+.+.+.++++
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD--l---p~ee~~~~~~~~~~~gl~~i~lv~P~-----T~~eri~~i~~ 161 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD--L---PLEESGDLVEAAKKHGVKPIFLVAPN-----ADDERLKQIAE 161 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC--C---ChHHHHHHHHHHHHCCCcEEEEECCC-----CCHHHHHHHHH
Confidence 3332222 1 235678899999999998752 1 236677777777665 4444444452 35677777774
Q ss_pred -CCCEEEE---eecCc------h---h---hHhhhhCCCeEEEecCc----chhHhHHHHcCCceeecccc
Q 018443 206 -SPNLAGV---KECVG------N---D---RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 206 -~pnivGi---K~s~~------d---~---~i~~~~~~~~~v~~G~d----~~~l~~~l~~Ga~G~is~~~ 256 (356)
.+.++.+ .-.+| + . +++++++. .++.|.. +.. ......|+||++.|++
T Consensus 162 ~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--pi~vgfGI~~~e~~-~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 162 KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--PVLVGFGISKPEQV-KQAIDAGADGVIVGSA 229 (256)
T ss_pred hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC--CEEEeCCCCCHHHH-HHHHHcCCCEEEECHH
Confidence 3434432 11111 1 1 23333333 3444432 223 3346789999999865
No 71
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.27 E-value=0.96 Score=44.74 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCEE-----EEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 142 ATEQGFAVGMHAA-----LHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 142 lar~a~~~Gadav-----lv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
.++.|++.|.... ....|+..+.+.+.+.+.++++.+.
T Consensus 167 ~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 167 VALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM 209 (347)
T ss_pred HHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc
Confidence 4445555554432 1234555555555566666665554
No 72
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=94.18 E-value=0.67 Score=45.04 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=69.4
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHH----hCCCcEEEEecCCCCHHHH
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTREA 139 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~----~~grvpVi~gvg~~st~~a 139 (356)
-|-+.+.--+..+.+.+++..+...|+|=|====.-........+||...+..+++. ++.+.-..+++++.+.++.
T Consensus 18 ~tiiKP~~Glsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~em 97 (309)
T PF00016_consen 18 GTIIKPKLGLSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDEM 97 (309)
T ss_dssp EEEESSSSTS-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHHH
T ss_pred ccccCcceeecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecccccccHHHH
Confidence 344555544899999999999999999876322222455667899999888777664 3444445778888789999
Q ss_pred HHHHHHHHHcCCCEEEEcC
Q 018443 140 IHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~p 158 (356)
+++++.+++.|++++|+-+
T Consensus 98 ~~ra~~a~~~G~~~vmv~~ 116 (309)
T PF00016_consen 98 IERAEYAKEAGANAVMVNV 116 (309)
T ss_dssp HHHHHHHHHHTGSEEEEEH
T ss_pred HHhhhhhhhhccchhhccc
Confidence 9999999999999999863
No 73
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=94.14 E-value=2.6 Score=42.33 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=72.8
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEEecCCCCHHHH
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREA 139 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~gvg~~st~~a 139 (356)
-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+..+++.+ +.++-..+++++ ++++.
T Consensus 128 ~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~-~~~em 206 (391)
T cd08209 128 MSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTG-PVFTL 206 (391)
T ss_pred EeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHHHH
Confidence 4555565458999999999999999998542111345666778999998877776643 344445778886 58999
Q ss_pred HHHHHHHHHcCCCEEEEcCCCC
Q 018443 140 IHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y 161 (356)
++.++.+++.|++++|+-+-.+
T Consensus 207 ~~ra~~~~~~G~~~~mv~~~~~ 228 (391)
T cd08209 207 KEKARRLVEAGANALLFNVFAY 228 (391)
T ss_pred HHHHHHHHHhCCCEEEEecccc
Confidence 9999999999999999876444
No 74
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.05 E-value=1.6 Score=42.47 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc------c--cc-CC-CHHHHHHHHHHHHHHhCCCcEEEEecC--C-CCHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTG------E--GQ-LM-SWDEHIMLIGHTVNCFGASVKVIGNTG--S-NSTREA 139 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstG------E--~~-~L-t~eEr~~li~~~~~~~~grvpVi~gvg--~-~st~~a 139 (356)
-|.+.+.+.++.+.+.|++||=++++.- + +. .+ ..+--.++++.+.+.+ .+||.+-+. - ....+.
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~--~~pv~vKir~g~~~~~~~~ 149 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV--DIPVTVKIRIGWDDAHINA 149 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc--CCCEEEEEEcccCCCcchH
Confidence 3678888999988899999997765421 1 11 12 2344445555555544 367766542 1 223467
Q ss_pred HHHHHHHHHcCCCEEEEcC
Q 018443 140 IHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~p 158 (356)
+++++.+++.|+|++.+..
T Consensus 150 ~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 150 VEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 8999999999999998753
No 75
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.05 E-value=0.17 Score=49.95 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccc------------ccCCCH-HH---HHHHHHHHHHHhCCCcEEEEecCCCCH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGE------------GQLMSW-DE---HIMLIGHTVNCFGASVKVIGNTGSNST 136 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE------------~~~Lt~-eE---r~~li~~~~~~~~grvpVi~gvg~~st 136 (356)
++.+.+..+++.+.+.|++||.+.+++-. ..-+|- .. -.+.+..+.+.+.+++|||+.=|=.+.
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ 301 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSA 301 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 45566888999999999999999887632 112342 22 334555666666667898854444466
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
+++++..+ +|||+|++....+.
T Consensus 302 eda~e~l~----aGAd~V~v~~~~~~ 323 (344)
T PRK05286 302 EDAYEKIR----AGASLVQIYSGLIY 323 (344)
T ss_pred HHHHHHHH----cCCCHHHHHHHHHH
Confidence 66666653 79999999888643
No 76
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.94 E-value=3.6 Score=37.24 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=84.1
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCCCHH
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTR 137 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~st~ 137 (356)
+......-| +.|.-..+.....++..++.|++.+-+.-..|-..+=.+++-.+-+..+++.+.+ -++||...+..+.+
T Consensus 53 ~~v~~~~~f-p~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~ 131 (203)
T cd00959 53 VKVCTVIGF-PLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE 131 (203)
T ss_pred cEEEEEEec-CCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH
Confidence 333333433 2244566777777999999999999887777743332335455555566666553 24457788888778
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHh
Q 018443 138 EAIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y-~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La 204 (356)
+....+|.|.++|||.|=...=|. ...|.+.+..+-+.+....||.+- -|.. +.+...++.
T Consensus 132 ~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a-----GGik-t~~~~l~~~ 193 (203)
T cd00959 132 EIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA-----GGIR-TLEDALAMI 193 (203)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe-----CCCC-CHHHHHHHH
Confidence 888889999999999887654343 234555444443333322455443 1333 555555544
No 77
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.92 E-value=1.8 Score=42.40 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCccc----c-----------cCCCHHHHHHH----HHHHHHHhCCCc
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTGE----G-----------QLMSWDEHIML----IGHTVNCFGASV 125 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~GstGE----~-----------~~Lt~eEr~~l----i~~~~~~~~grv 125 (356)
.++.+.++++++ +..++|.|||=+.+..|- | +--|.+.|.++ ++.+.+.++.+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 355555555544 556799999988765542 1 12244556544 444455555566
Q ss_pred EEEEec-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-----CCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018443 126 KVIGNT-------GSNSTREAIHATEQGFAVGMHAALHINPYYGK-----TSLEGLISHFDSVLSM--GPTIIYNVPSRT 191 (356)
Q Consensus 126 pVi~gv-------g~~st~~ai~lar~a~~~Gadavlv~pP~y~~-----~s~~~l~~y~~~va~~--~PiilYn~P~~t 191 (356)
+|.+=+ ++.+.++++++++..++.|+|.+-+....+.. ........+.+.|.+. .||+. .
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~------~ 296 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA------V 296 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE------e
Confidence 765532 24468999999999999999999876432211 1111123555666665 46653 2
Q ss_pred CCCCCHHHHHHHhc
Q 018443 192 GQDIPPRVIHTMAQ 205 (356)
Q Consensus 192 G~~ls~~~l~~La~ 205 (356)
|.-.+++..+++.+
T Consensus 297 G~i~t~~~a~~~l~ 310 (336)
T cd02932 297 GLITDPEQAEAILE 310 (336)
T ss_pred CCCCCHHHHHHHHH
Confidence 44457887777764
No 78
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.91 E-value=6 Score=37.59 Aligned_cols=176 Identities=12% Similarity=0.140 Sum_probs=99.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc----cccC------------CCHHHHHHHHHHHHHHhCCCcEEEE
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG----EGQL------------MSWDEHIMLIGHTVNCFGASVKVIG 129 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstG----E~~~------------Lt~eEr~~li~~~~~~~~grvpVi~ 129 (356)
||---|.-|.+.+.+.++.+.+.|+|-+=+.=-.+ +++. +|.+.-.++++.+.+ ..++|++.
T Consensus 19 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~--~~~~p~vl 96 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNG--EIKAPIVI 96 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc--CCCCCEEE
Confidence 34446888999999999999999999885432222 2221 222333333333332 23678654
Q ss_pred ecCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-
Q 018443 130 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ- 205 (356)
Q Consensus 130 gvg~~st~~--ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~- 205 (356)
=+..|..-. .=++.+.++++|+|++++.. . ..++..+|++.+.+. +..+..=.|. -+.+-++++++
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgviipD--L---P~ee~~~~~~~~~~~gi~~I~lv~Pt-----T~~eri~~i~~~ 166 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIPD--L---PYEESDYLISVCNLYNIELILLIAPT-----SSKSRIQKIARA 166 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEecC--C---CHHHHHHHHHHHHHcCCCEEEEECCC-----CCHHHHHHHHHh
Confidence 343333222 23478889999999998843 2 237777887777776 4444443442 35677888774
Q ss_pred CCCEEE---------EeecCchh------hHhhhhCCCeEEEecCc----chhHhHHHHcCCceeecccc
Q 018443 206 SPNLAG---------VKECVGND------RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 206 ~pnivG---------iK~s~~d~------~i~~~~~~~~~v~~G~d----~~~l~~~l~~Ga~G~is~~~ 256 (356)
...++. .|....+. ++++.++. .+..|.. +.. ......|+||+|.|++
T Consensus 167 a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~--Pi~vGFGI~~~e~~-~~~~~~GADGvVVGSa 233 (263)
T CHL00200 167 APGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNK--PIILGFGISTSEQI-KQIKGWNINGIVIGSA 233 (263)
T ss_pred CCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCC--CEEEECCcCCHHHH-HHHHhcCCCEEEECHH
Confidence 333443 33221110 23333333 3333432 223 2235689999998865
No 79
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.90 E-value=1 Score=41.97 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
..|.+.+...++.+.+.|++.+.+.-|+| .+++++-.++++.+.+..+. +++-++. +++..-++.-+..|.++||
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~li~~l~~~~~~-~~~~~H~-Hn~~gla~an~laA~~aG~ 216 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGADEISLKDTVG---LATPEEVAELVKALREALPD-VPLGLHT-HNTLGLAVANSLAALEAGA 216 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEechhcC---CcCHHHHHHHHHHHHHhCCC-CeEEEEe-CCCCChHHHHHHHHHHcCC
Confidence 58999999999999999999999999988 49999999999999987754 5665554 6678888999999999999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHHHH
Q 018443 152 HAALHINPYYG----KTSLEGLISHFDS 175 (356)
Q Consensus 152 davlv~pP~y~----~~s~~~l~~y~~~ 175 (356)
+.+=..-.-.+ ..+-++++.+++.
T Consensus 217 ~~id~s~~G~G~~~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 217 DRVDGSVNGLGERAGNAATEDLVAALEG 244 (265)
T ss_pred CEEEeccccccccccCccHHHHHHHHHh
Confidence 99976655443 3556777777655
No 80
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.82 E-value=0.91 Score=42.75 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE--ecCCCCHHHHHHHHHHHHHcC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~--gvg~~st~~ai~lar~a~~~G 150 (356)
.|.+.+.+.++...+.|+|-+.+... .+ .+.++.+++. .++||++ |+...+.+++.+.++.+.++|
T Consensus 153 ~~~~~~~~~~~~a~~~GADyikt~~~------~~----~~~l~~~~~~--~~iPVva~GGi~~~~~~~~~~~i~~~~~aG 220 (258)
T TIGR01949 153 RDPELVAHAARLGAELGADIVKTPYT------GD----IDSFRDVVKG--CPAPVVVAGGPKTNSDREFLQMIKDAMEAG 220 (258)
T ss_pred ccHHHHHHHHHHHHHHCCCEEeccCC------CC----HHHHHHHHHh--CCCcEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 44555555566666778887765311 11 3344444443 3567654 565557899999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018443 151 MHAALHINPYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 151 adavlv~pP~y~~~s~~~l~~y~~~va~ 178 (356)
++++.+..-.|...+..+..+-++.+..
T Consensus 221 a~Gia~g~~i~~~~dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 221 AAGVAVGRNIFQHDDPVGITKAVCKIVH 248 (258)
T ss_pred CcEEehhhHhhcCCCHHHHHHHHHHHHh
Confidence 9999998877877787777777776654
No 81
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.80 E-value=2.4 Score=40.34 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCC-----CCHHHHHHHHHHHH
Q 018443 105 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI--NPYYGK-----TSLEGLISHFDSVL 177 (356)
Q Consensus 105 Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~--pP~y~~-----~s~~~l~~y~~~va 177 (356)
...++..+-++...+. ..+.|++++++..+.++..+.++.+++.|+|++-+- .|.... .+.+.+.+-.++|.
T Consensus 80 ~g~~~~~~~i~~~~~~-~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr 158 (289)
T cd02810 80 LGLDVWLQDIAKAKKE-FPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVK 158 (289)
T ss_pred cCHHHHHHHHHHHHhc-cCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHH
Confidence 3455555555443332 136799999999999999999999999999999763 454322 13456666666776
Q ss_pred hc--CCeEEEe
Q 018443 178 SM--GPTIIYN 186 (356)
Q Consensus 178 ~~--~PiilYn 186 (356)
+. .|+++==
T Consensus 159 ~~~~~pv~vKl 169 (289)
T cd02810 159 AAVDIPLLVKL 169 (289)
T ss_pred HccCCCEEEEe
Confidence 65 4666543
No 82
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=93.79 E-value=5.8 Score=37.02 Aligned_cols=74 Identities=26% Similarity=0.276 Sum_probs=49.9
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 143 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~la 143 (356)
+|=+|+|-.++.+.+ +.+.+.|.|+|+|+||+|= |.+.-.++++.+.+ -.+||+.=.|+.+
T Consensus 11 ~~liDP~k~~~~~~~----~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~---~~lPvilfp~~~~-------- 71 (232)
T PRK04169 11 VTLLDPDKPLPDEAL----EAICESGTDAIIVGGSDGV----TEENVDELVKAIKE---YDLPVILFPGNIE-------- 71 (232)
T ss_pred EEEECCCCCCCHHHH----HHHHhcCCCEEEEcCCCcc----chHHHHHHHHHHhc---CCCCEEEeCCCcc--------
Confidence 344556666666665 5677899999999999985 55555667766665 3589987665531
Q ss_pred HHHHHcCCCEEEEcC
Q 018443 144 EQGFAVGMHAALHIN 158 (356)
Q Consensus 144 r~a~~~Gadavlv~p 158 (356)
...-+||+++++.
T Consensus 72 --~i~~~aDa~l~~s 84 (232)
T PRK04169 72 --GISPGADAYLFPS 84 (232)
T ss_pred --ccCcCCCEEEEEE
Confidence 1224588888764
No 83
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.74 E-value=0.56 Score=44.56 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=55.4
Q ss_pred EeeecccCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC-----
Q 018443 61 TAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN----- 134 (356)
Q Consensus 61 ~al~TPf~~dg~ID~~~l~~~v~~li~-~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~----- 134 (356)
...-.||..-++ .+..-+.+.++++ .|++++=+=|+ +|....++.. ++..+||+.++|-.
T Consensus 79 vv~DmPf~sy~~--~e~a~~na~rl~~eaGa~aVkiEgg---------~~~~~~i~~l---~~~gIpV~gHiGltPq~a~ 144 (263)
T TIGR00222 79 IVTDLPFMSYAT--PEQALKNAARVMQETGANAVKLEGG---------EWLVETVQML---TERGVPVVGHLGLTPQSVN 144 (263)
T ss_pred EEeCCCcCCCCC--HHHHHHHHHHHHHHhCCeEEEEcCc---------HhHHHHHHHH---HHCCCCEEEecCCCceeEe
Confidence 335678886553 5555555555565 99999998775 4444444443 34578888444311
Q ss_pred -------------CHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 135 -------------STREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 135 -------------st~~ai~lar~a~~~Gadavlv~p 158 (356)
+.++.++.++..+++||+++++-.
T Consensus 145 ~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 145 ILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLEC 181 (263)
T ss_pred ecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 255788889999999999998754
No 84
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.66 E-value=5.6 Score=36.54 Aligned_cols=169 Identities=13% Similarity=0.091 Sum_probs=102.7
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
+.-.++++.+-.. |.+....+++.+++.|+.-+=+.= +.+.-.+.++...+..+++=.+++|+|+
T Consensus 10 l~~~~vi~vir~~-------~~~~a~~~~~al~~~Gi~~iEit~--------~~~~a~~~i~~l~~~~~~~p~~~vGaGT 74 (213)
T PRK06552 10 LKANGVVAVVRGE-------SKEEALKISLAVIKGGIKAIEVTY--------TNPFASEVIKELVELYKDDPEVLIGAGT 74 (213)
T ss_pred HHHCCEEEEEECC-------CHHHHHHHHHHHHHCCCCEEEEEC--------CCccHHHHHHHHHHHcCCCCCeEEeeee
Confidence 3446777776543 899999999999999999985533 3344567777777765432138889987
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCEEEE
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGV 212 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~-~pnivGi 212 (356)
-.+.+ .++.|.++||+.++ .|.+ .+++.+|.++. ..|+ ..|. .+++.+.+..+ -..++++
T Consensus 75 V~~~~---~~~~a~~aGA~Fiv--sP~~----~~~v~~~~~~~--~i~~-------iPG~-~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 75 VLDAV---TARLAILAGAQFIV--SPSF----NRETAKICNLY--QIPY-------LPGC-MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CCCHH---HHHHHHHcCCCEEE--CCCC----CHHHHHHHHHc--CCCE-------ECCc-CCHHHHHHHHHcCCCEEEE
Confidence 76655 55778889999887 4554 46777774421 1333 2354 56666655543 3445544
Q ss_pred e--ecCchhhHhhhh--CC--CeEEEecCcchhHhHHHHcCCceeecccc
Q 018443 213 K--ECVGNDRVEHYT--GN--GIVVWSGNDDQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 213 K--~s~~d~~i~~~~--~~--~~~v~~G~d~~~l~~~l~~Ga~G~is~~~ 256 (356)
= +..+...++.+. -+ .|-...|-...-+..++..|++++..+.+
T Consensus 136 FPa~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 136 FPGSTLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred CCcccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchH
Confidence 0 111112233221 12 33444566555556678899998765543
No 85
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.66 E-value=4.8 Score=39.42 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCc----------------ccccCCCHHHHHHHHHHHH----HHhCCCcEEEEec-----
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTT----------------GEGQLMSWDEHIMLIGHTV----NCFGASVKVIGNT----- 131 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~Gst----------------GE~~~Lt~eEr~~li~~~~----~~~~grvpVi~gv----- 131 (356)
.+.+-.++..++|.|||=+.+.. .|+-- |.|.|.+++..++ +.++.+.+|.+=+
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~ 228 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADF 228 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHc
Confidence 34444455667999999886654 23322 5677877555444 4455566776644
Q ss_pred --CCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 132 --GSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 132 --g~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
++.+.++++++++..++.|+|.+-+..
T Consensus 229 ~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 229 QRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 346889999999999999999998654
No 86
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.62 E-value=7.7 Score=37.88 Aligned_cols=80 Identities=19% Similarity=0.107 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC---C---CCCCCC-HHHHHHHHHHHHhc
Q 018443 107 WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---P---YYGKTS-LEGLISHFDSVLSM 179 (356)
Q Consensus 107 ~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p---P---~y~~~s-~~~l~~y~~~va~~ 179 (356)
.++..+.++.+.+. .+.||++++...+.++-.+.++.++++|+|++-+-- | -....+ ++.+.+..+++.+.
T Consensus 84 ~~~~~~~i~~~~~~--~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 84 PEEYLELIRRAKRA--VSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 45555555443322 257999999888899999999999999999996632 2 111111 13355666666655
Q ss_pred --CCeEEEeCC
Q 018443 180 --GPTIIYNVP 188 (356)
Q Consensus 180 --~PiilYn~P 188 (356)
.||++==.|
T Consensus 162 ~~iPv~vKl~p 172 (325)
T cd04739 162 VTIPVAVKLSP 172 (325)
T ss_pred cCCCEEEEcCC
Confidence 588877555
No 87
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.61 E-value=2.1 Score=41.76 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC----------cccccCCCHHHHHHHHHHHHHHhCCCcEEEE--ecCC-CCHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGS-NSTREAI 140 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gs----------tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~--gvg~-~st~~ai 140 (356)
|.+.+.+.++...+.|+++|=+|.+ .|....-+.+.=.++++.+++.+ ++||.+ ..|- .+..+++
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~--d~pv~vKiR~G~~~~~~~~~ 152 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCV 152 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc--CCceEEEEEccccCCcchHH
Confidence 6788888888888899999976654 23444445777778888887766 345443 3332 2445899
Q ss_pred HHHHHHHHcCCCEEEEcC
Q 018443 141 HATEQGFAVGMHAALHIN 158 (356)
Q Consensus 141 ~lar~a~~~Gadavlv~p 158 (356)
++++.+++.|+|++.+.+
T Consensus 153 ~~a~~le~~G~d~i~vh~ 170 (321)
T PRK10415 153 EIAQLAEDCGIQALTIHG 170 (321)
T ss_pred HHHHHHHHhCCCEEEEec
Confidence 999999999999998763
No 88
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=93.60 E-value=2.6 Score=43.16 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC---CCcE-EEEecCCCCHHH
Q 018443 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVK-VIGNTGSNSTRE 138 (356)
Q Consensus 63 l~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~---grvp-Vi~gvg~~st~~ 138 (356)
+-|-+.+.--+..+.+.+++..+...|+|=|====.-+.......+||...+..+++.+. |+.+ ..+++++.++++
T Consensus 148 ~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~e 227 (450)
T cd08212 148 LGCTIKPKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEE 227 (450)
T ss_pred EEEeccCccCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHH
Confidence 444555554589999999999999999885421113445667789999988877776542 3334 456898888999
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 018443 139 AIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~ 157 (356)
.++.++.+++.|++++|+-
T Consensus 228 m~~ra~~a~~~G~~~~mv~ 246 (450)
T cd08212 228 MYKRAEFAKELGSPIIMHD 246 (450)
T ss_pred HHHHHHHHHHhCCCeEeee
Confidence 9999999999999999987
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.58 E-value=1.5 Score=41.56 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=88.1
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
|-.|+.+. +.+.+.. +.+.+.+.++++.+.+.|++.|.+.=|+| .+++++-.++++.+.+..+..+|+=++. ++
T Consensus 119 k~~G~~v~-~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~-Hn 192 (266)
T cd07944 119 KEKGYEVF-FNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHA-HN 192 (266)
T ss_pred HHCCCeEE-EEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEe-CC
Confidence 34564322 3343322 37999999999999999999999999999 7899999999999988776457775554 67
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCC----CCHHHHHHHHHHH
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGK----TSLEGLISHFDSV 176 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~----~s~~~l~~y~~~v 176 (356)
+..-++..+..|.++|++.+=..---++. ++-|+++.+++..
T Consensus 193 ~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 193 NLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNK 238 (266)
T ss_pred CccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHh
Confidence 89999999999999999998766554433 4556777666543
No 90
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=93.58 E-value=0.35 Score=44.77 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=59.2
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHHH------------------------HHHHHCCCCEEEEccCcccccCCCHHH
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDLV------------------------NMQIVNGAEGMIVGGTTGEGQLMSWDE 109 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~v------------------------~~li~~Gv~Gl~v~GstGE~~~Lt~eE 109 (356)
.-..||+--.+ ++||+||.+.++.++ +++++.|+.-|+.-|.. .|..|
T Consensus 85 lG~~GVV~G~l---t~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-----~sa~e 156 (241)
T COG3142 85 LGVQGVVLGAL---TADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-----ASALE 156 (241)
T ss_pred cCCCcEEEeee---cCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-----Cchhh
Confidence 44667655544 579999999998875 67899999999877766 78999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCC
Q 018443 110 HIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 110 r~~li~~~~~~~~grvpVi~gvg~ 133 (356)
....++.+++.+++|+.+++|.|=
T Consensus 157 g~~~l~~li~~a~gri~Im~GaGV 180 (241)
T COG3142 157 GLDLLKRLIEQAKGRIIIMAGAGV 180 (241)
T ss_pred hHHHHHHHHHHhcCCEEEEeCCCC
Confidence 999999999999999999998664
No 91
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.52 E-value=0.82 Score=42.19 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh-CCCcEEEEecCCC-------CHHHHHHH-
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSN-------STREAIHA- 142 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~-~grvpVi~gvg~~-------st~~ai~l- 142 (356)
.-+.......++..++.|++++.+--..|. ++.+|..+.++.+++.+ +..+|+|+-+... -+.+.++.
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~---~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~ 148 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGS---EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYA 148 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCC---chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHH
Confidence 455677777888999999999855444443 34677777777777754 3478888855320 12355665
Q ss_pred HHHHHHcCCCEEEE
Q 018443 143 TEQGFAVGMHAALH 156 (356)
Q Consensus 143 ar~a~~~Gadavlv 156 (356)
++.|.+.|||.+-+
T Consensus 149 ~~~a~~~GaD~Ik~ 162 (235)
T cd00958 149 ARIGAELGADIVKT 162 (235)
T ss_pred HHHHHHHCCCEEEe
Confidence 89999999998887
No 92
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=93.51 E-value=0.42 Score=45.31 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=41.1
Q ss_pred ccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 96 GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 96 ~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
.|.||+-..+. ++-.+.++.+.+.+ +.||++|.|=.+.+++- +.. .|+||+++-.-
T Consensus 173 ~GvTG~~~~~~-~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~----~~~-~~aDGvIVGSa 228 (259)
T PF00290_consen 173 MGVTGSRTELP-DELKEFIKRIKKHT--DLPVAVGFGISTPEQAK----KLA-AGADGVIVGSA 228 (259)
T ss_dssp SSSSSTTSSCH-HHHHHHHHHHHHTT--SS-EEEESSS-SHHHHH----HHH-TTSSEEEESHH
T ss_pred CCCCCCcccch-HHHHHHHHHHHhhc--CcceEEecCCCCHHHHH----HHH-ccCCEEEECHH
Confidence 78999988775 56778888887766 78999999976554443 333 88999999754
No 93
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.47 E-value=2.1 Score=40.06 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
+.++++.+.++|++|+++.. |..||-.++++.+.+. .+..+.-+...++.+.++..... ..|.-.+|..
T Consensus 93 ~~~fi~~~~~aG~~giiipD-------l~~ee~~~~~~~~~~~---g~~~i~~i~P~T~~~~i~~i~~~-~~~~vy~~s~ 161 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPD-------LPPEEAEEFREAAKEY---GLDLIFLVAPTTPDERIKKIAEL-ASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHHCCCcEEEECC-------CCHHHHHHHHHHHHHc---CCcEEEEeCCCCCHHHHHHHHhh-CCCCEEEEeC
Confidence 57888889999999998863 3345666666555442 33344444444444444443321 3455555666
Q ss_pred CCCCCCCC--HHHHHHHHHHHHhcCCeEEEeCCCCCCCCCC-HHHHHHHhcCC
Q 018443 158 NPYYGKTS--LEGLISHFDSVLSMGPTIIYNVPSRTGQDIP-PRVIHTMAQSP 207 (356)
Q Consensus 158 pP~y~~~s--~~~l~~y~~~va~~~PiilYn~P~~tG~~ls-~~~l~~La~~p 207 (356)
.|.+...+ .+.+.++.+.+.+.. +.|-..|..++ ++.+.++.+..
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~vggGI~~~e~~~~~~~~A 209 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQAAEVAKYA 209 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcC-----CCcEEEEccCCCHHHHHHHHccC
Confidence 67664322 355666666666642 33333345566 55777776543
No 94
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.45 E-value=1.6 Score=42.97 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCHHHHHHHH-------HHHHHCCCCEEEEccCcc----cccC-----C------CHHHHHHHHHHHHHHhCCCc---EE
Q 018443 73 FDLEAYDDLV-------NMQIVNGAEGMIVGGTTG----EGQL-----M------SWDEHIMLIGHTVNCFGASV---KV 127 (356)
Q Consensus 73 ID~~~l~~~v-------~~li~~Gv~Gl~v~GstG----E~~~-----L------t~eEr~~li~~~~~~~~grv---pV 127 (356)
++.+.+++++ ....++|.|||-+.+..| +|.+ - |.+.|.+++..+++.+...+ +|
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v 221 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRV 221 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCce
Confidence 4455555444 455668999998877664 1111 1 34667776666666543221 44
Q ss_pred EEecC----------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC
Q 018443 128 IGNTG----------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI 195 (356)
Q Consensus 128 i~gvg----------~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~l 195 (356)
.+=++ +.+.+|++++++..++.|+|.+-+....+......-...+.+.|.+. .||+.-. + +
T Consensus 222 ~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G-----~--i 294 (338)
T cd02933 222 GIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAG-----G--Y 294 (338)
T ss_pred EEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEEC-----C--C
Confidence 43222 34789999999999999999998866544332222233444444444 5777632 2 3
Q ss_pred CHHHHHHHhcCC
Q 018443 196 PPRVIHTMAQSP 207 (356)
Q Consensus 196 s~~~l~~La~~p 207 (356)
+++..+++.+..
T Consensus 295 ~~~~a~~~l~~g 306 (338)
T cd02933 295 DAESAEAALADG 306 (338)
T ss_pred CHHHHHHHHHcC
Confidence 488888877543
No 95
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.45 E-value=0.81 Score=43.94 Aligned_cols=84 Identities=8% Similarity=0.029 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEccCc------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVN--GAEGMIVGGTT------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 144 (356)
Q Consensus 73 ID~~~l~~~v~~li~~--Gv~Gl~v~Gst------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar 144 (356)
-|.+.+.+.++.+.+. ++++|-+|-+. |....-+.+.-.++++.+.+.+ ++||.+=++. +.++++++++
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~~-~~~~~~~~a~ 176 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLSP-NVTDITEIAK 176 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECCC-ChhhHHHHHH
Confidence 4578888899988775 49999887653 5556667788888888888766 5799888764 5789999999
Q ss_pred HHHHcCCCEEEEcCC
Q 018443 145 QGFAVGMHAALHINP 159 (356)
Q Consensus 145 ~a~~~Gadavlv~pP 159 (356)
.++++|+|++.+..-
T Consensus 177 ~l~~~G~d~i~v~nt 191 (300)
T TIGR01037 177 AAEEAGADGLTLINT 191 (300)
T ss_pred HHHHcCCCEEEEEcc
Confidence 999999999998754
No 96
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=93.44 E-value=0.56 Score=46.76 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~~ 148 (356)
.|.+|.+-=++-++.+.+.+.+|+.+.|+.|| +.+|..++++.+....+...|. +.|||. ..+.+ .+.+
T Consensus 205 QGG~~~dLR~~Sa~~l~~~~~~GyaIGG~vge----~~~~~~~il~~~~~~LP~~kPRyLmGvG~--P~di~----~~V~ 274 (372)
T PRK01008 205 HGGIDPDQRKIGCKFVEDLPFDGSAIGGSLGK----NLQEMVEVVGVTTSNLSKERPVHLLGIGD--LPSIW----ATVG 274 (372)
T ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC----CHHHHHHHHHHHHhhCCCCCCeEEecCCC--HHHHH----HHHH
Confidence 58899998899999999999999999999998 8899999999999998887786 779996 44444 3778
Q ss_pred cCCCEEEEcCCC
Q 018443 149 VGMHAALHINPY 160 (356)
Q Consensus 149 ~Gadavlv~pP~ 160 (356)
.|+|-.=..-|.
T Consensus 275 ~GvD~FDcv~Pt 286 (372)
T PRK01008 275 FGIDSFDSSYPT 286 (372)
T ss_pred hCCCeeeeccch
Confidence 999977776664
No 97
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=93.37 E-value=2 Score=40.77 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=73.2
Q ss_pred HHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhC-CCcEEEEec---CCCCHHHHHHHHHHHHHcCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~-grvpVi~gv---g~~st~~ai~lar~a~~~Gad 152 (356)
++...+.|++.+-+.-+++|. ...|.+|-.+.+..+++.+. ....|.+++ ...+.+...++++.+.++|+|
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN 156 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC
Confidence 566677899999888888764 45677886666666666543 235665553 445688999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018443 153 AALHINPYYGKTSLEGLISHFDSVLSMG 180 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~va~~~ 180 (356)
.+.+. =..+..+++++.++++.+.+..
T Consensus 157 ~i~l~-Dt~G~~~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 157 RVGIA-DTVGIATPRQVYELVRTLRGVV 183 (262)
T ss_pred EEEEC-CcCCCCCHHHHHHHHHHHHHhc
Confidence 87654 4567788999999999998873
No 98
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.31 E-value=2.4 Score=40.72 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 149 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~ 149 (356)
+++.|.+-+.+.++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ .+|+-++. +++.--++.-+-.|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~v~~lv~~l~~~~~-~~~i~~H~-Hn~~Gla~AN~laA~~a 223 (287)
T PRK05692 149 EGEVPPEAVADVAERLFALGCYEISLGDTIGV---GTPGQVRAVLEAVLAEFP-AERLAGHF-HDTYGQALANIYASLEE 223 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeccccCc---cCHHHHHHHHHHHHHhCC-CCeEEEEe-cCCCCcHHHHHHHHHHh
Confidence 56899999999999999999999999999995 589999999999888764 46776655 56788889999999999
Q ss_pred CCCEEEEcCCCC----------CCCCHHHHHHHHH
Q 018443 150 GMHAALHINPYY----------GKTSLEGLISHFD 174 (356)
Q Consensus 150 Gadavlv~pP~y----------~~~s~~~l~~y~~ 174 (356)
|++.+=..---. +.+.-|+++.+++
T Consensus 224 G~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~ 258 (287)
T PRK05692 224 GITVFDASVGGLGGCPYAPGASGNVATEDVLYMLH 258 (287)
T ss_pred CCCEEEEEccccCCCCCCCCccccccHHHHHHHHH
Confidence 999885554322 2345577776665
No 99
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.30 E-value=6.2 Score=35.85 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCE
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gada 153 (356)
+.....++.+.+.+.|+++|-++---+-+. =+. +.++.+.+.+ ++||+++-+-.+. +.++.+.++|||+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~-g~~----~~~~~i~~~v--~iPi~~~~~i~~~----~~v~~~~~~Gad~ 97 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQ-GSL----EDLRAVREAV--SLPVLRKDFIIDP----YQIYEARAAGADA 97 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccC-CCH----HHHHHHHHhc--CCCEEECCeecCH----HHHHHHHHcCCCE
Confidence 344566777778889999998763221111 011 2344444433 6899976433323 3688899999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCEEEEeecCc-----hh----hH
Q 018443 154 ALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVG-----ND----RV 221 (356)
Q Consensus 154 vlv~pP~y~~~s~~~l~~y~~~va~~-~-PiilYn~P~~tG~~ls~~~l~~La~~-pnivGiK~s~~-----d~----~i 221 (356)
+.+..+... .+.+.++++..... . +++..+ +.+.+.+..+. ..++|+=...+ +. ++
T Consensus 98 v~l~~~~~~---~~~~~~~~~~~~~~g~~~~v~v~---------~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l 165 (217)
T cd00331 98 VLLIVAALD---DEQLKELYELARELGMEVLVEVH---------DEEELERALALGAKIIGINNRDLKTFEVDLNTTERL 165 (217)
T ss_pred EEEeeccCC---HHHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHH
Confidence 998877552 35555555554433 2 222222 45556666654 45666542211 11 22
Q ss_pred hhhhCCCeEEEe--cCc--chhHhHHHHcCCceeecccccc
Q 018443 222 EHYTGNGIVVWS--GND--DQCHDARWNHGATGVISVTSNL 258 (356)
Q Consensus 222 ~~~~~~~~~v~~--G~d--~~~l~~~l~~Ga~G~is~~~n~ 258 (356)
.+....+..++. |-. +.+. ..+.+|++|++.|.+-+
T Consensus 166 ~~~~~~~~pvia~gGI~s~edi~-~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 166 APLIPKDVILVSESGISTPEDVK-RLAEAGADAVLIGESLM 205 (217)
T ss_pred HHhCCCCCEEEEEcCCCCHHHHH-HHHHcCCCEEEECHHHc
Confidence 222223444443 332 2332 34688999999887643
No 100
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=93.26 E-value=2.5 Score=40.55 Aligned_cols=105 Identities=11% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccC-c---cc---ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC--------CHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGT-T---GE---GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN--------STR 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~Gs-t---GE---~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~--------st~ 137 (356)
.+...++..+..+.+.|++.+++++. . |+ ...-..+-=.+|++.+.+..+.. +-+|++.+ +.+
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~--f~igva~~Pe~Hp~~~~~~ 148 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDY--FCIGVAGYPEGHPEAESVE 148 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCc--eEEEEEECCCCCCCCCCHH
Confidence 36679999999999999999866542 2 11 11111222466776655543322 34444333 333
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeE
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTI 183 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~Pii 183 (356)
.-++..++=.++|||.+ ++-++| +.+.+.+|.+.+.+. .||+
T Consensus 149 ~d~~~L~~Ki~aGA~f~-iTQ~~F---d~~~~~~f~~~~~~~gi~~PIi 193 (281)
T TIGR00677 149 LDLKYLKEKVDAGADFI-ITQLFY---DVDNFLKFVNDCRAIGIDCPIV 193 (281)
T ss_pred HHHHHHHHHHHcCCCEe-ecccee---cHHHHHHHHHHHHHcCCCCCEE
Confidence 33455554446999944 455677 567788888887664 4763
No 101
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=93.25 E-value=2.8 Score=40.64 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----HHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gada 153 (356)
+.++++.++++|++++.+.-+.|....+|.++.++.+ +.+++.++. .|++.++.+.. ... .....+.|+|+
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~cG~~-~~~---l~~~~~~g~d~ 247 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-CPTILHICGNT-TPI---LEYIAQCGFDG 247 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEEEECCCC-hhH---HHHHHHcCCCe
Confidence 3456666788999999999888888888999999776 455665655 67888754432 222 33344457776
Q ss_pred EE
Q 018443 154 AL 155 (356)
Q Consensus 154 vl 155 (356)
+.
T Consensus 248 ~~ 249 (326)
T cd03307 248 IS 249 (326)
T ss_pred ec
Confidence 54
No 102
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=93.21 E-value=2.9 Score=42.19 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=73.3
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEEecCCCCHHHH
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREA 139 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~gvg~~st~~a 139 (356)
-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+..+++.+ +.++-..+++++ ++.+.
T Consensus 138 ~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em 216 (407)
T PRK09549 138 MSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTG-RTFEL 216 (407)
T ss_pred EEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-CHHHH
Confidence 4555655558999999999999999998653212345677788999988877776643 334445668886 47899
Q ss_pred HHHHHHHHHcCCCEEEEcCCCC
Q 018443 140 IHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y 161 (356)
+++++.+++.|++++|+-+-.+
T Consensus 217 ~~ra~~a~~~G~~~~m~~~~~~ 238 (407)
T PRK09549 217 KEKAKRAAEAGADALLFNVFAY 238 (407)
T ss_pred HHHHHHHHHcCCCeEEEecccc
Confidence 9999999999999999876444
No 103
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.12 E-value=4.7 Score=39.66 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCccc----------------ccCCCHHHHHHHHHHHHHHh----CCC
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNCF----GAS 124 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~GstGE----------------~~~Lt~eEr~~li~~~~~~~----~gr 124 (356)
.+..+.+..+++ ...++|.|||-+.+.-|- +-- |.+.|.+++..+++.+ +.+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHHcCCC
Confidence 355555555554 445689999988885443 211 4677766666665544 334
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHHcC-CCEEEEcCC
Q 018443 125 VKVIGNTG-------SNSTREAIHATEQGFAVG-MHAALHINP 159 (356)
Q Consensus 125 vpVi~gvg-------~~st~~ai~lar~a~~~G-adavlv~pP 159 (356)
.+|-+=++ +.+.+|++++++..++.| +|.+-+...
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 44433222 256899999999999998 899988543
No 104
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.10 E-value=2.3 Score=40.09 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
++.+.+.+.++++.+.+.|++.|.+.=|+| .+++++-.++++.+.+..+. +|+=++. +++..-++..+..|.++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~-~~l~~H~-Hn~~GlA~AN~laAi~aG 210 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDP-TPVGFHG-HNNLGLAVANSLAAVEAG 210 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCC-ceEEEEe-cCCcchHHHHHHHHHHhC
Confidence 568899999999999999999999999999 89999999999999887753 4655544 677888999999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018443 151 MHAALHINPYYG----KTSLEGLISHFDS 175 (356)
Q Consensus 151 adavlv~pP~y~----~~s~~~l~~y~~~ 175 (356)
++.+=..---.+ .+.-|++..+++.
T Consensus 211 a~~vd~s~~GlG~~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 211 ATRIDGSLAGLGAGAGNTPLEVLVAVLER 239 (263)
T ss_pred CCEEEeecccccCCcCCccHHHHHHHHHh
Confidence 999866554443 3566777777643
No 105
>PLN02535 glycolate oxidase
Probab=93.02 E-value=0.99 Score=44.91 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=63.7
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
+..+++.|+++|.+.|+-|-..-.+..- ...+..+.+.+++++|||+-=|=.+-.+.+ .|-.+|||+|++-.|+.
T Consensus 237 A~~a~~~GvD~I~vsn~GGr~~d~~~~t-~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~----KALalGA~aV~vGr~~l 311 (364)
T PLN02535 237 AIKAVEVGVAGIIVSNHGARQLDYSPAT-ISVLEEVVQAVGGRVPVLLDGGVRRGTDVF----KALALGAQAVLVGRPVI 311 (364)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCCCChHH-HHHHHHHHHHHhcCCCEEeeCCCCCHHHHH----HHHHcCCCEEEECHHHH
Confidence 4567789999999988877544334333 345555566666789998743333344433 45678999999999986
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018443 162 GK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 162 ~~---~s~~~l~~y~~~va~~ 179 (356)
+. ..++++.+.++.+.+.
T Consensus 312 ~~l~~~g~~gv~~~l~~l~~e 332 (364)
T PLN02535 312 YGLAAKGEDGVRKVIEMLKDE 332 (364)
T ss_pred hhhhhccHHHHHHHHHHHHHH
Confidence 54 4678888888777654
No 106
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.98 E-value=1.7 Score=41.39 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=70.0
Q ss_pred HHHHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhCC-CcEEEEecC------CCCHHHHHHHHHHHH
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGF 147 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg------~~st~~ai~lar~a~ 147 (356)
+-++..++.|++.+-+..++++. ...|.+|-.+.+...++.++. ...|.++.- ..+.+..+++++.+.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 44666778899999888887765 556777777766666665432 345544211 235677788888888
Q ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018443 148 AVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 181 (356)
Q Consensus 148 ~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P 181 (356)
++|+|.+.+. =..+..+++++.++++.+.+..|
T Consensus 162 ~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 162 EAGADWLVLC-DTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred hCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhCC
Confidence 8999876643 45667788888888888877643
No 107
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.86 E-value=2.2 Score=42.55 Aligned_cols=104 Identities=10% Similarity=-0.003 Sum_probs=73.4
Q ss_pred HHHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhCC-CcEEEEec---CCCCHHHHHHHHHHHHHcCC
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~g-rvpVi~gv---g~~st~~ai~lar~a~~~Ga 151 (356)
-++..++.|++.+-+..++++. ..+|.+|-.+.+..+++.+.. ...|.++. +..+.+..+++++.+.++|+
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga 159 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGA 159 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCC
Confidence 3666778899988888888885 467777777766666665432 33454442 44578888889999988999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018443 152 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 185 (356)
Q Consensus 152 davlv~pP~y~~~s~~~l~~y~~~va~~--~PiilY 185 (356)
+.+.+.- ..+..+++++.+.++.+.+. .|+-++
T Consensus 160 ~~I~l~D-T~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 160 DRVRFCD-TVGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred CEEEEec-cCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 8876553 45667888888888888776 455443
No 108
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.84 E-value=1.3 Score=41.54 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 82 VNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.+.+.+.|++.+..+| .-|....++..|..+ .+++. .++|||++-|=.+.++ +..|.++|+|+|++-.-.
T Consensus 137 ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~---~I~e~--~~vpVI~egGI~tped----a~~AmelGAdgVlV~SAI 207 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR---IIIER--ADVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAI 207 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH---HHHHh--CCCcEEEeCCCCCHHH----HHHHHHcCCCEEEEChHh
Confidence 4455666999997755 345555676644444 45554 3689999877655555 456677999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 018443 161 YGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 161 y~~~s~~~l~~y~~~va~~ 179 (356)
....++..+.+.|..-.++
T Consensus 208 t~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 208 AKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 7657788888888877654
No 109
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=92.82 E-value=4.1 Score=41.19 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEEecCCCCHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREAIHATEQ 145 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~gvg~~st~~ai~lar~ 145 (356)
.--++.+.+.+++..+...|+|=|====.-.....-..+||...+-.+++.+ +.++-..+++++ ++.+.++.++.
T Consensus 149 ~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~ 227 (407)
T TIGR03332 149 MIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-RTFDLKDKAKR 227 (407)
T ss_pred ccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCC-CHHHHHHHHHH
Confidence 3348999999999999999988652211234455667899998887776654 334445668886 57899999999
Q ss_pred HHHcCCCEEEEcCCCCC
Q 018443 146 GFAVGMHAALHINPYYG 162 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~ 162 (356)
+++.|++++|+-+-.++
T Consensus 228 a~~~G~~~~mv~~~~~G 244 (407)
T TIGR03332 228 AAELGADVLLFNVFAYG 244 (407)
T ss_pred HHHhCCCEEEEeccccC
Confidence 99999999998765443
No 110
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.81 E-value=0.82 Score=44.68 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----ccccCCCHHHH-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEH-IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gst----GE~~~Lt~eEr-~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~ 148 (356)
+.+.+.+.++.+.+.|+++|-++-+. ......+.+++ .++++.+.+.+ ++||++=.+.+ ..+..+.++.+++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~vKl~p~-~~~~~~~a~~l~~ 186 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVAVKLSPF-FSALAHMAKQLDA 186 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEEEEcCCC-ccCHHHHHHHHHH
Confidence 45778888888888899999887763 22233444444 36666666554 58999987643 4588999999999
Q ss_pred cCCCEEEEcCCCC
Q 018443 149 VGMHAALHINPYY 161 (356)
Q Consensus 149 ~Gadavlv~pP~y 161 (356)
+|+|++.+..-.+
T Consensus 187 ~Gadgi~~~nt~~ 199 (325)
T cd04739 187 AGADGLVLFNRFY 199 (325)
T ss_pred cCCCeEEEEcCcC
Confidence 9999999987543
No 111
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=92.79 E-value=0.97 Score=44.22 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=44.9
Q ss_pred cccCCCCCCCHHHHHHHHHHH-HHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC---------
Q 018443 65 TPYLPDGRFDLEAYDDLVNMQ-IVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN--------- 134 (356)
Q Consensus 65 TPf~~dg~ID~~~l~~~v~~l-i~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~--------- 134 (356)
.||-.- ..+.+..-+++.++ .+.|++++=+=|++ .++...++..+ ...+||+.++|-+
T Consensus 103 mPfgSY-~~s~e~av~nA~rl~~eaGa~aVKlEGg~--------~~~~~~I~~l~---~~GIPV~gHiGLtPQs~~~lGG 170 (332)
T PLN02424 103 LPFGSY-ESSTDQAVESAVRMLKEGGMDAVKLEGGS--------PSRVTAAKAIV---EAGIAVMGHVGLTPQAISVLGG 170 (332)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHhCCcEEEECCCc--------HHHHHHHHHHH---HcCCCEEEeecccceeehhhcC
Confidence 355422 23555555555555 45888888776665 44445555444 4467888666532
Q ss_pred ---------CHHHHHHHHHHHHHcCCCEEEE
Q 018443 135 ---------STREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 135 ---------st~~ai~lar~a~~~Gadavlv 156 (356)
+.++.++.++..+++||+++++
T Consensus 171 ykvqGr~~~~a~~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 171 FRPQGRTAESAVKVVETALALQEAGCFAVVL 201 (332)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 1234455555556666666554
No 112
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.78 E-value=2.6 Score=39.61 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018443 139 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 181 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P 181 (356)
..+.++.|++.|.. +.+.+|.....+.+.+.+.++++.+..+
T Consensus 112 ~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 153 (259)
T cd07939 112 LRRLVGRAKDRGLF-VSVGAEDASRADPDFLIEFAEVAQEAGA 153 (259)
T ss_pred HHHHHHHHHHCCCe-EEEeeccCCCCCHHHHHHHHHHHHHCCC
Confidence 34555566666653 4445555555666666666666655533
No 113
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=92.75 E-value=2.9 Score=39.78 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE-ccCcc--c--ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-C-------CCCHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIV-GGTTG--E--GQLMSWDEHIMLIGHTVNCFGASVKVIGNT-G-------SNSTREA 139 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v-~GstG--E--~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g-------~~st~~a 139 (356)
.|..+++..+..+.+.|++.+++ .|... + ...-..+.=.+|++.+.+.. ++ +-+|+ + ..+.++-
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~-~~--f~ig~a~~Peghp~~~~~~~~ 146 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEF-GD--FDIGVAAYPEKHPEAPNLEED 146 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc-CC--eeEEEEeCCCCCCCCCCHHHH
Confidence 58999999999999999999884 44222 1 11122233566776665543 33 33333 2 2345566
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCCHHHHHHHhc
Q 018443 140 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P-----------~~tG~~ls~~~l~~La~ 205 (356)
++..++=.++|||.+ ++-|.| +.+.+.+|.+.+.+. .||+.==.| ..+|+.+|.+++++|.+
T Consensus 147 ~~~L~~K~~aGA~f~-iTQ~~f---d~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~ 222 (272)
T TIGR00676 147 IENLKRKVDAGADYA-ITQLFF---DNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEK 222 (272)
T ss_pred HHHHHHHHHcCCCeE-eecccc---CHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHh
Confidence 666666678999954 455777 567777777776554 365422111 13466666666666654
No 114
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=92.74 E-value=5.8 Score=36.68 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=94.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHH
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 145 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~ 145 (356)
=+|+|-.++.+.+. +.+.++|.|+|+|.||+|.. -+.++-.++++. ... .+||+.=.++.+.
T Consensus 5 ~iDP~K~~~~~~~~---~~~~~~gtdai~vGGS~~v~--~~~~~~~~~ik~---~~~-~~Pvilfp~~~~~--------- 66 (219)
T cd02812 5 KLDPDKELVDEEIA---KLAEESGTDAIMVGGSDGVS--STLDNVVRLIKR---IRR-PVPVILFPSNPEA--------- 66 (219)
T ss_pred eeCCCCCCCHHHHH---HHHHhcCCCEEEECCccchh--hhHHHHHHHHHH---hcC-CCCEEEeCCCccc---------
Confidence 34455445555544 33344999999999999986 444444454443 333 5899877765421
Q ss_pred HHHcCCCEEEEcC------CCCCCCCHHHHHHHHHHH--Hhc-CCe--EEEeCCCC----C--CCCCCHHHHHHHh---c
Q 018443 146 GFAVGMHAALHIN------PYYGKTSLEGLISHFDSV--LSM-GPT--IIYNVPSR----T--GQDIPPRVIHTMA---Q 205 (356)
Q Consensus 146 a~~~Gadavlv~p------P~y~~~s~~~l~~y~~~v--a~~-~Pi--ilYn~P~~----t--G~~ls~~~l~~La---~ 205 (356)
-.-|||++++.. |+|.--.+-+-...+..+ -.+ .|- ++-|.-.. + ....+++.+..-+ +
T Consensus 67 -i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae 145 (219)
T cd02812 67 -VSPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAE 145 (219)
T ss_pred -cCcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHH
Confidence 146799998764 555433333333333331 112 352 33343221 1 2246777776654 3
Q ss_pred -C-CCEEEEeecCch--h----hHhhhhCCCeEEEecCc----chhHhHHHHcCCceeeccccccc-HHHHHHH
Q 018443 206 -S-PNLAGVKECVGN--D----RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLV-PGMMREL 266 (356)
Q Consensus 206 -~-pnivGiK~s~~d--~----~i~~~~~~~~~v~~G~d----~~~l~~~l~~Ga~G~is~~~n~~-P~~~~~l 266 (356)
. =.++.+-.|... . ++++... +..++.|.. +.. ...+.+|+++++.|+.-+- |+.+.++
T Consensus 146 ~~g~~ivyLe~SG~~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a-~~l~~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 146 YLGMPIVYLEYSGAYGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQA-KEMAEAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred HcCCeEEEeCCCCCcCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHH-HHHHHcCCCEEEECchhhCCHHHHHHH
Confidence 2 345555533222 2 2233221 344444442 233 3345679999998876553 4554443
No 115
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.68 E-value=4.2 Score=40.09 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCcc----------------cccCCCHHHHHHHHHHH----HHHhCCCcEEEEec------
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTG----------------EGQLMSWDEHIMLIGHT----VNCFGASVKVIGNT------ 131 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstG----------------E~~~Lt~eEr~~li~~~----~~~~~grvpVi~gv------ 131 (356)
+.+-++...++|.|||=+.|..| |+-- |.+.|.+++..+ .+.++.+.+|.+=+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~ 217 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG-SFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCC-CHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence 44444556679999998877322 2222 456666555444 44455555654222
Q ss_pred -CCCCHHHHHHHHHHHHHcCCCEEEEcC-----CCCC--C-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH
Q 018443 132 -GSNSTREAIHATEQGFAVGMHAALHIN-----PYYG--K-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI 200 (356)
Q Consensus 132 -g~~st~~ai~lar~a~~~Gadavlv~p-----P~y~--~-~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l 200 (356)
+..+.++++++++..++.|+|.+-+.. |... . ..+.....+.+.+.+. .||+. .|.-.+++.+
T Consensus 218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~------~G~i~~~~~a 291 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA------SNRINTPEVA 291 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE------cCCCCCHHHH
Confidence 335889999999999999999998842 2110 0 1112234455667665 46554 3445678888
Q ss_pred HHHhc
Q 018443 201 HTMAQ 205 (356)
Q Consensus 201 ~~La~ 205 (356)
+++.+
T Consensus 292 ~~~i~ 296 (353)
T cd02930 292 ERLLA 296 (353)
T ss_pred HHHHH
Confidence 88764
No 116
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.64 E-value=1.3 Score=39.74 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
..++..++.|++++...++. ..+++...+ -..+++.|+. +. +.++.|.+.|+|.+.+. |
T Consensus 67 ~~~~~a~~~Ga~~i~~p~~~-----------~~~~~~~~~---~~~~~i~gv~--t~----~e~~~A~~~Gad~i~~~-p 125 (190)
T cd00452 67 EQADAAIAAGAQFIVSPGLD-----------PEVVKAANR---AGIPLLPGVA--TP----TEIMQALELGADIVKLF-P 125 (190)
T ss_pred HHHHHHHHcCCCEEEcCCCC-----------HHHHHHHHH---cCCcEECCcC--CH----HHHHHHHHCCCCEEEEc-C
Confidence 45667778999999765554 234444333 2468888887 33 44666778999999973 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEeCCC-CCCCCCCHHHHHHHhcCC
Q 018443 160 YYGKTSLEGLISHFDSVLSMGPTIIYNVPS-RTGQDIPPRVIHTMAQSP 207 (356)
Q Consensus 160 ~y~~~s~~~l~~y~~~va~~~PiilYn~P~-~tG~~ls~~~l~~La~~p 207 (356)
.+.. ..++++.+....| +.|- .+| .++++.+.++.+.+
T Consensus 126 ----~~~~-g~~~~~~l~~~~~----~~p~~a~G-GI~~~n~~~~~~~G 164 (190)
T cd00452 126 ----AEAV-GPAYIKALKGPFP----QVRFMPTG-GVSLDNAAEWLAAG 164 (190)
T ss_pred ----Cccc-CHHHHHHHHhhCC----CCeEEEeC-CCCHHHHHHHHHCC
Confidence 1222 4667777765433 1111 133 35888888888654
No 117
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.62 E-value=0.75 Score=46.45 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccc---------------------ccCCCHHHH---HHHHHHHHHHhC-CCcEEE
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGE---------------------GQLMSWDEH---IMLIGHTVNCFG-ASVKVI 128 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE---------------------~~~Lt~eEr---~~li~~~~~~~~-grvpVi 128 (356)
|...+..+++.+.+.|++||.+.-|+.. +..=...++ .+.+..+.+.++ +++|||
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIi 257 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPIS 257 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEE
Confidence 4445778888888999999985333322 222233443 344444444443 278888
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 129 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 129 ~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
+.=|=.+.++++++.+ +|||+|++..-.++
T Consensus 258 g~GGI~s~~da~e~i~----aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 258 GIGGIETWRDAAEFIL----LGAGTVQVCTAAMQ 287 (420)
T ss_pred eecCcCCHHHHHHHHH----hCCChheeeeeecc
Confidence 6555567888888863 99999999887665
No 118
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.62 E-value=0.64 Score=43.39 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
.+..+++.+.+.|++.+++.+-+-++..--. -.++++.+.+.+ ++|||++=|-.|.++..++.+ ..+.|+|++|+
T Consensus 147 ~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~i 221 (241)
T PRK14024 147 DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--NLELLREVCART--DAPVVASGGVSSLDDLRALAE-LVPLGVEGAIV 221 (241)
T ss_pred cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhh-hccCCccEEEE
Confidence 4566677778999999999998887765433 356666666654 689999888778888776643 23579999999
Q ss_pred cCCCC-CCCCHHHHHHHHH
Q 018443 157 INPYY-GKTSLEGLISHFD 174 (356)
Q Consensus 157 ~pP~y-~~~s~~~l~~y~~ 174 (356)
---.| .+.+-+++.++.+
T Consensus 222 gra~~~g~~~~~~~~~~~~ 240 (241)
T PRK14024 222 GKALYAGAFTLPEALAVVR 240 (241)
T ss_pred eHHHHcCCCCHHHHHHHhc
Confidence 98876 4567777776643
No 119
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=92.61 E-value=2.6 Score=42.93 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=85.9
Q ss_pred ccccCCCCCCCCcchh--cccCCccccc-cCcee-----EeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccc
Q 018443 30 AAIIPNYHLPMRSFEV--KNRTSAEDIK-ALRLI-----TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE 101 (356)
Q Consensus 30 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~Gvi-----~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE 101 (356)
.-..-|+.+|-+...- --+++.+-++ +.|+. |-+-|-+.+.--+.-+.+.+++..+...| |-|====.-..
T Consensus 119 ~lrL~Di~lP~~~~~~f~GP~fGi~G~R~~lgv~~~~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GG-D~IKDDE~l~d 197 (439)
T cd08211 119 YLKMHDFYVPESMLELFDGPSVNISDMWKVLGRPEVDGGYIAGTIIKPKLGLRPKPFAEACYAFWLGG-DFIKNDEPQAN 197 (439)
T ss_pred ceEEEEecCCHHHHhcCCCCCCchhHHHHHhCCCCcCCCceEEeecCCcccCCHHHHHHHHHHHHhcC-CccccccccCC
Confidence 3445566665433311 1124444442 56666 66677777765699999999999999999 75521113455
Q ss_pred ccCCCHHHHHHHHHHHHHH----hCCCcEEEEecCCCCHHHHHHHHHHHHHcCC-----CEEEEcC
Q 018443 102 GQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTREAIHATEQGFAVGM-----HAALHIN 158 (356)
Q Consensus 102 ~~~Lt~eEr~~li~~~~~~----~~grvpVi~gvg~~st~~ai~lar~a~~~Ga-----davlv~p 158 (356)
......+||...+-.+++. ++.++-..+++++.++++.++.++.+++.|+ .++|+-+
T Consensus 198 q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~ 263 (439)
T cd08211 198 QPFCPLKKVIPLVADAMRRAQDETGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDG 263 (439)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECc
Confidence 6677889999666655553 4444334579987789999999999998866 8888764
No 120
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.56 E-value=2.6 Score=41.18 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
....++.+++.|++.|.+..+.|-. +...++++.+.+..+ ++||++|... +.+.++.+.++|||++.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~-----~~~~~~i~~ik~~~p-~v~Vi~G~v~-----t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS-----VYVIEMIKFIKKKYP-NVDVIAGNVV-----TAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc-----HHHHHHHHHHHHHCC-CceEEECCCC-----CHHHHHHHHhcCCCEEEE
Confidence 4567888899999999887666532 455667777776553 6888885432 345567778899999987
No 121
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.48 E-value=3.3 Score=38.98 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=86.7
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
-.|+.+. +.+. ..++.|.+.+.++++.+.+.|++.|.++=|+| .+++++-.++++.+.+..+ +|+=++ ++++
T Consensus 121 ~~G~~v~-~~~~-~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~--~~l~~H-~Hn~ 192 (259)
T cd07939 121 DRGLFVS-VGAE-DASRADPDFLIEFAEVAQEAGADRLRFADTVG---ILDPFTTYELIRRLRAATD--LPLEFH-AHND 192 (259)
T ss_pred HCCCeEE-Eeec-cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcC--CeEEEE-ecCC
Confidence 4565444 3332 35679999999999999999999999999999 7899999999998888764 665444 4677
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHHHH
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDSV 176 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~~v 176 (356)
..-++..+-.|.++|++.+=..---++ ...-|+++.+++..
T Consensus 193 ~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 193 LGLATANTLAAVRAGATHVSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred CChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHHh
Confidence 888999999999999998865544332 35567777777654
No 122
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.48 E-value=0.65 Score=46.49 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=62.8
Q ss_pred HHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 83 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 83 ~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
..+++.|++||+|.++-|-...-... -..++..+++.+++++|||+.=|=.+-.+. -.|-.+|||++++-.|+.+
T Consensus 268 ~~a~~~G~d~I~vsnhGGr~~d~~~~-t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv----~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 268 RRAVEAGVDGVVVSNHGGRQVDGSIA-ALDALPEIVEAVGDRLTVLFDSGVRTGADI----MKALALGAKAVLIGRPYAY 342 (383)
T ss_pred HHHHHCCCCEEEEcCCCCcCCCCCcC-HHHHHHHHHHHhcCCCeEEEeCCcCcHHHH----HHHHHcCCCEEEEcHHHHH
Confidence 35677999999998887744211111 234555666667778999885443333332 2456789999999999865
Q ss_pred C---CCHHHHHHHHHHHHhc
Q 018443 163 K---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 163 ~---~s~~~l~~y~~~va~~ 179 (356)
. ..++++.++++.+.++
T Consensus 343 ~l~~~G~~gv~~~l~~l~~E 362 (383)
T cd03332 343 GLALGGEDGVEHVLRNLLAE 362 (383)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 3 4788899988888765
No 123
>PLN02979 glycolate oxidase
Probab=92.35 E-value=1.1 Score=44.61 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
.+.+..+++.|++||.|.|+-|-...-... -..++..+++.++++++||+.=|=.+-.+.+ .|-.+|||++++--
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~-t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~----KALALGAdaV~iGr 308 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPA-TISALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGR 308 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchh-HHHHHHHHHHHhCCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcH
Confidence 345567889999999999987755332221 2445555566677889999854432223322 34568999999999
Q ss_pred CCCCC---CCHHHHHHHHHHHHhc
Q 018443 159 PYYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 159 P~y~~---~s~~~l~~y~~~va~~ 179 (356)
|+.+. ..++++.+.++.+.++
T Consensus 309 p~L~~la~~G~~Gv~~~l~~l~~E 332 (366)
T PLN02979 309 PVVFSLAAEGEAGVRKVLQMLRDE 332 (366)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 97643 5778888888888776
No 124
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=92.28 E-value=6.1 Score=38.99 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC--C---CC---HH--HHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG--S---NS---TR--EAIHAT 143 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg--~---~s---t~--~ai~la 143 (356)
.+..+++++...+..+++||++-..-|--.. ... ..+..+|+++. + .+ .. ...--.
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld~~yG~~a~-------------~~~-~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sv 112 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLDPEYGLPAA-------------KVR-DPNCGLLLSYEKTGYDATAPGRLPDLLDNWSV 112 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEccccChhhh-------------ccc-CCCCCeEEEecccccccCCCCCCccccccccH
Confidence 4677899999999999999998644443211 111 13456777753 1 10 11 112226
Q ss_pred HHHHHcCCCEEEEcCCCCCCC-C---HHHHHHHHHHHHhc-----CCeEE----EeCCCCCCCC-----CCHHHHHHHh
Q 018443 144 EQGFAVGMHAALHINPYYGKT-S---LEGLISHFDSVLSM-----GPTII----YNVPSRTGQD-----IPPRVIHTMA 204 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y~~~-s---~~~l~~y~~~va~~-----~Piil----Yn~P~~tG~~-----ls~~~l~~La 204 (356)
+++.++|||+|-++- ||.+- + +++..++.++|.++ +|+++ |..+...... ..|+.+...+
T Consensus 113 e~a~~~GAdAVk~lv-~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~ 190 (340)
T PRK12858 113 RRIKEAGADAVKLLL-YYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTM 190 (340)
T ss_pred HHHHHcCCCEEEEEE-EeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHH
Confidence 889999999998875 33332 2 35677788888764 59766 4432211112 4566666554
No 125
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.27 E-value=1.8 Score=40.76 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 82 VNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.+.+.+.|++.+..+| .-|....++..|. ++.+++.. ++|||++.|=.+.++ +.+|.++|+|+|++-.=.
T Consensus 137 ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~---i~~i~e~~--~vpVIveaGI~tped----a~~AmelGAdgVlV~SAI 207 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIGSGLGLLNPYN---LRIIIEQA--DVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAI 207 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCCCHHH---HHHHHHhc--CCeEEEeCCCCCHHH----HHHHHHcCCCEEEEChHh
Confidence 4555666999997755 3455556766444 55555552 689999877655555 456677999999998877
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 018443 161 YGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 161 y~~~s~~~l~~y~~~va~~ 179 (356)
....++..+.+.|..-.++
T Consensus 208 tka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 208 AVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 6557788888888877654
No 126
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.19 E-value=4.5 Score=40.14 Aligned_cols=102 Identities=11% Similarity=-0.041 Sum_probs=75.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccccc-----CCCHHHHHHHHHHHHHHhC-CCcEEEEec---CCCCHHHHHHHHHHHHHc
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAV 149 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~-----~Lt~eEr~~li~~~~~~~~-grvpVi~gv---g~~st~~ai~lar~a~~~ 149 (356)
.+-++..++.|++.+-+..++++.+ ..|.+|-.+.+..+++.+. ....|.++. +..+.+..++.++.+.++
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC
Confidence 3447778889999998888887764 4577777766666666543 234454443 445788899999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018443 150 GMHAALHINPYYGKTSLEGLISHFDSVLSMGP 181 (356)
Q Consensus 150 Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P 181 (356)
|+|.+.+.. ..+..+++++.+.++.+.+..|
T Consensus 154 g~~~i~l~D-T~G~~~P~~v~~li~~l~~~~~ 184 (363)
T TIGR02090 154 GADRINIAD-TVGVLTPQKMEELIKKLKENVK 184 (363)
T ss_pred CCCEEEEeC-CCCccCHHHHHHHHHHHhcccC
Confidence 999877654 4577788999999999987744
No 127
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.18 E-value=0.83 Score=44.64 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccccc------------CCCH-HHH---HHHHHHHHHHhCCCcEEEEecCCCCH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ------------LMSW-DEH---IMLIGHTVNCFGASVKVIGNTGSNST 136 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~------------~Lt~-eEr---~~li~~~~~~~~grvpVi~gvg~~st 136 (356)
.+.+.+..+++.+.+.|++||.+.+++.+.. -+|- ..+ .+.+..+.+.+++++||++.=|=.+.
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~ 292 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSG 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCH
Confidence 3456788999999999999999877654221 1232 222 45666667777667888754344467
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
+++.++.. +|||+|++....+.
T Consensus 293 ~da~e~l~----aGAd~V~vg~~~~~ 314 (327)
T cd04738 293 EDAYEKIR----AGASLVQLYTGLVY 314 (327)
T ss_pred HHHHHHHH----cCCCHHhccHHHHh
Confidence 77777663 79999999887654
No 128
>PLN02591 tryptophan synthase
Probab=92.17 E-value=11 Score=35.67 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=106.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc----cccC------------CCHHHHHHHHHHHHHHhCCCcEEE
Q 018443 65 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG----EGQL------------MSWDEHIMLIGHTVNCFGASVKVI 128 (356)
Q Consensus 65 TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstG----E~~~------------Lt~eEr~~li~~~~~~~~grvpVi 128 (356)
-||---|.-|++...+.++.+++.|+|-+=+.=-.+ +++. +|.+.-.++++.+.+ ..++|++
T Consensus 5 i~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~--~~~~p~i 82 (250)
T PLN02591 5 IPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAP--QLSCPIV 82 (250)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc--CCCCCEE
Confidence 345557889999999999999999999885432222 2221 233333444444432 2367866
Q ss_pred EecCCCCHH--HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 129 GNTGSNSTR--EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 129 ~gvg~~st~--~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
.=+..|..- -.=++.+.++++|+|++++.. ...++...|.....+. +..|..=.| .-+.+-++++++
T Consensus 83 lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipD-----LP~ee~~~~~~~~~~~gl~~I~lv~P-----tt~~~ri~~ia~ 152 (250)
T PLN02591 83 LFTYYNPILKRGIDKFMATIKEAGVHGLVVPD-----LPLEETEALRAEAAKNGIELVLLTTP-----TTPTERMKAIAE 152 (250)
T ss_pred EEecccHHHHhHHHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHHHHHcCCeEEEEeCC-----CCCHHHHHHHHH
Confidence 444444322 233568889999999999853 3458888887777665 555555445 245667888885
Q ss_pred -CCCEEEE---eecCch-----h---h-Hhhhh-CCCeEEEecCcch---hHhHHHHcCCceeecccc
Q 018443 206 -SPNLAGV---KECVGN-----D---R-VEHYT-GNGIVVWSGNDDQ---CHDARWNHGATGVISVTS 256 (356)
Q Consensus 206 -~pnivGi---K~s~~d-----~---~-i~~~~-~~~~~v~~G~d~~---~l~~~l~~Ga~G~is~~~ 256 (356)
.+.++.+ .-.+|. . . +.+.. ..+.-++.|..-. -....+..|+||+|.|++
T Consensus 153 ~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 153 ASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred hCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 4565544 222221 1 1 11111 2355666666421 122335789999998865
No 129
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.16 E-value=1.7 Score=41.86 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc---------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 143 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~Gst---------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~la 143 (356)
-|.+.+.+.++.+.+.|+++|=+|-+. |....-..+.-.++++.+.+.+ ++||++=+.. ...+..+++
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~Pv~vKl~~-~~~~~~~~a 186 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIPVIAKLTP-NITDIREIA 186 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCCeEEECCC-CchhHHHHH
Confidence 466888899988877899999875542 4444455667777777777655 5799998765 456889999
Q ss_pred HHHHHcCCCEEEEcCCCCC
Q 018443 144 EQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y~ 162 (356)
+.+++.|+|++.++.-.+.
T Consensus 187 ~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 187 RAAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHHcCCCEEEEeccccc
Confidence 9999999999999886553
No 130
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.12 E-value=3.2 Score=40.84 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
...+.+.+.++++.+.+.|++.|++.=|.| .|++++=.++++.+.+..++.+|+=++ ++++..-++..+..|.++|
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H-~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSAG---ALLPEDVRDRVRALRAALKPDTQVGFH-GHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEEE-eCCCcchHHHHHHHHHHhC
Confidence 568999999999999999999999999999 789999999999998888666776554 4677888999999999999
Q ss_pred CCEEEEcCCCCCC----CCHHHHHHHH
Q 018443 151 MHAALHINPYYGK----TSLEGLISHF 173 (356)
Q Consensus 151 adavlv~pP~y~~----~s~~~l~~y~ 173 (356)
++.+=..---++. +.-|.++.++
T Consensus 215 a~~iD~Sl~GlG~~aGN~~tE~lv~~L 241 (337)
T PRK08195 215 ATRIDGSLAGLGAGAGNTPLEVLVAVL 241 (337)
T ss_pred CCEEEecChhhcccccCccHHHHHHHH
Confidence 9977655443322 3345555544
No 131
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.12 E-value=1.4 Score=43.48 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccC--CCHHHHHHHHHHHHH---HhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCE
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQL--MSWDEHIMLIGHTVN---CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~--Lt~eEr~~li~~~~~---~~~grvpVi~gvg~~st~~ai~lar~a~~~Gada 153 (356)
.+.+..+.+.|+++|.+.++-|-... .+.-+ .+..+.+ .+++++|||+.=|=.+-.+++ .|..+|||+
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~---~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~----kalaLGA~a 296 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIE---VLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL----KALCLGAKA 296 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHH---HHHHHHHHHHHhCCCceEEEeCCCCCHHHHH----HHHHcCCCE
Confidence 34455778899999999887665432 22222 2223333 345689988744433444443 346689999
Q ss_pred EEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018443 154 ALHINPYYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 154 vlv~pP~y~~---~s~~~l~~y~~~va~~ 179 (356)
|.+-.|+.+. ..++++..+++.+.++
T Consensus 297 V~iG~~~l~~l~~~G~~gv~~~l~~l~~E 325 (344)
T cd02922 297 VGLGRPFLYALSAYGEEGVEKAIQILKDE 325 (344)
T ss_pred EEECHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 9999998754 3688999999988776
No 132
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=92.12 E-value=0.71 Score=46.21 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=62.8
Q ss_pred HHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 83 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 83 ~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
..+++.|+++|.|.|.-|-...-... -...+..+++.+++++|||+-=|=.+-.+. -.|-.+|||+|++--|+.+
T Consensus 260 ~~a~~~Gvd~I~Vs~hGGr~~d~~~~-t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di----~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 260 RDAVRFGADGIVVSNHGGRQLDGVLS-SARALPAIADAVKGDITILADSGIRNGLDV----VRMIALGADTVLLGRAFVY 334 (381)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCccc-HHHHHHHHHHHhcCCCeEEeeCCcCcHHHH----HHHHHcCcCceeEhHHHHH
Confidence 46778999999998887764321111 123444455566678999884443333332 2356689999999999865
Q ss_pred C---CCHHHHHHHHHHHHhc
Q 018443 163 K---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 163 ~---~s~~~l~~y~~~va~~ 179 (356)
. ..++++...++.+.++
T Consensus 335 ~la~~G~~gv~~~l~~l~~E 354 (381)
T PRK11197 335 ALAAAGQAGVANLLDLIEKE 354 (381)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 4 4789999999988776
No 133
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.08 E-value=2.9 Score=40.20 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhCC-CcEEEEec---------CCCCHHHHHHHHHH
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNT---------GSNSTREAIHATEQ 145 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~g-rvpVi~gv---------g~~st~~ai~lar~ 145 (356)
-++.-++.|++.+-+.-+++|. ...|.+|-.+.++.+++.++. ...|.+++ +..+.+..+++++.
T Consensus 84 ~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
T PRK05692 84 GLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAER 163 (287)
T ss_pred HHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 3355667888888887777774 446666766666666665432 33443221 13356777888888
Q ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 146 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+.++|+|.+.+.- ..+..++.++.+.++.+.+.
T Consensus 164 ~~~~G~d~i~l~D-T~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 164 LFALGCYEISLGD-TIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHcCCcEEEecc-ccCccCHHHHHHHHHHHHHh
Confidence 8888887665443 44556677777777777765
No 134
>PRK13753 dihydropteroate synthase; Provisional
Probab=92.01 E-value=6.2 Score=37.88 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=74.3
Q ss_pred cCceeEeeecccCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCcc-ccc-CCCHH-HHHHHHHHHHHHhCCCcEEEEec
Q 018443 56 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTG-EGQ-LMSWD-EHIMLIGHTVNCFGASVKVIGNT 131 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~-ID~~~l~~~v~~li~~Gv~Gl~v~GstG-E~~-~Lt~e-Er~~li~~~~~~~~grvpVi~gv 131 (356)
..||+-..+=-|.+.|. .|.+...++++++++.|++-|=++|-++ -+. ..|.+ |..+++..+.......+| +.|
T Consensus 4 iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISI 81 (279)
T PRK13753 4 VFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSI 81 (279)
T ss_pred EEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEE
Confidence 35555443334877776 6999999999999999999999988444 332 34544 455555444333322344 355
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018443 132 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 188 (356)
Q Consensus 132 g~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P 188 (356)
-+... +.++.|-++|||-+.=+.-. +.+++ ++.+++. +|+++-+..
T Consensus 82 DT~~~----~va~~al~aGadiINDVsg~----~d~~~---~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 82 DSFQP----ETQRYALKRGVGYLNDIQGF----PDPAL---YPDIAEADCRLVVMHSA 128 (279)
T ss_pred ECCCH----HHHHHHHHcCCCEEEeCCCC----CchHH---HHHHHHcCCCEEEEecC
Confidence 44433 34556778999977665321 23344 3455565 798887763
No 135
>PLN02433 uroporphyrinogen decarboxylase
Probab=91.93 E-value=5.3 Score=39.25 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----HHHHHHhCC---CcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----~~~~~~~~g---rvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
+.++++.+++.|++.+.+.-+++. .||.++..+.+ +.+++.++. .+|++.++.+.+ .+.....+.|
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~-----~~~~~~~~~~ 253 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG-----GLLERLAGTG 253 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH-----HHHHHHHhcC
Confidence 345556677799999988877665 79999998766 345554432 467777765542 3345556678
Q ss_pred CCEEE
Q 018443 151 MHAAL 155 (356)
Q Consensus 151 adavl 155 (356)
+|++.
T Consensus 254 ~~~i~ 258 (345)
T PLN02433 254 VDVIG 258 (345)
T ss_pred CCEEE
Confidence 77554
No 136
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.93 E-value=1.4 Score=40.83 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=58.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
...+++.+.+.|++.+.+.+-+.+...--. ..++++.+.+.+ ++||+++=|-.+.+++.+..+. .|+|++++.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~--~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~---~g~dgv~vg 223 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGY--DLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEE---GGADAALAA 223 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHh---CCCCEEEEe
Confidence 456777888999999999664432211000 234455555543 6899887666667666555442 599999999
Q ss_pred CCCCC-CCCHHHHHHHHH
Q 018443 158 NPYYG-KTSLEGLISHFD 174 (356)
Q Consensus 158 pP~y~-~~s~~~l~~y~~ 174 (356)
.+.|. ..+.+++.++.+
T Consensus 224 ~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 224 SIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHHcCCCCHHHHHHHHh
Confidence 99774 567777766654
No 137
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.89 E-value=8.4 Score=35.16 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=94.4
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
+...++++.+-.. |.+.....++.+++.|+.-+=+--++ + .-.+.++...+..+. ++++|+|+
T Consensus 7 l~~~~~~~v~r~~-------~~~~~~~~~~a~~~gGi~~iEvt~~~-~-------~~~~~i~~l~~~~~~--~~~iGaGT 69 (206)
T PRK09140 7 FTKLPLIAILRGI-------TPDEALAHVGALIEAGFRAIEIPLNS-P-------DPFDSIAALVKALGD--RALIGAGT 69 (206)
T ss_pred HHhCCEEEEEeCC-------CHHHHHHHHHHHHHCCCCEEEEeCCC-c-------cHHHHHHHHHHHcCC--CcEEeEEe
Confidence 3345666665443 88999999999999999988554222 2 233356666655542 58889988
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC-CCEEEE
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGV 212 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~-pnivGi 212 (356)
--+.+ .++.|.++|||.++. |. .+.++.++.+.. ..+++ | | ..+++.+.+..+. -.++++
T Consensus 70 V~~~~---~~~~a~~aGA~fivs--p~----~~~~v~~~~~~~--~~~~~----~---G-~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 70 VLSPE---QVDRLADAGGRLIVT--PN----TDPEVIRRAVAL--GMVVM----P---G-VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred cCCHH---HHHHHHHcCCCEEEC--CC----CCHHHHHHHHHC--CCcEE----c---c-cCCHHHHHHHHHcCCCEEEE
Confidence 77666 456678899999886 33 345666664421 12222 2 3 3555555554433 345444
Q ss_pred eecC---chhhHhhh---hCCCe--EEEecCcchhHhHHHHcCCceeecc
Q 018443 213 KECV---GNDRVEHY---TGNGI--VVWSGNDDQCHDARWNHGATGVISV 254 (356)
Q Consensus 213 K~s~---~d~~i~~~---~~~~~--~v~~G~d~~~l~~~l~~Ga~G~is~ 254 (356)
..+ +-..+... .++++ -...|-+..-+..++..|++|+..+
T Consensus 131 -Fpa~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~ 179 (206)
T PRK09140 131 -FPASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLG 179 (206)
T ss_pred -CCCCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEe
Confidence 111 11123222 22123 3345665444556678999987544
No 138
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=91.77 E-value=1.8 Score=43.44 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCc---------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 141 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~Gst---------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~ 141 (356)
+.-+.+.+.++++.+.+.|+|+|-+|=+. |....-+.+.-.++++.+.+.+ ++||++=.+.+ ..+..+
T Consensus 122 ~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~--~iPv~vKLsPn-~t~i~~ 198 (385)
T PLN02495 122 EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA--TVPVWAKMTPN-ITDITQ 198 (385)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh--cCceEEEeCCC-hhhHHH
Confidence 34567889999999989999999876542 3333345555566666665544 68999999864 556889
Q ss_pred HHHHHHHcCCCEEEEcCCCC
Q 018443 142 ATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y 161 (356)
.++.+.+.|||++.+++-.+
T Consensus 199 ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 199 PARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHHhCCCEEEEecccC
Confidence 99999999999999998655
No 139
>PLN02433 uroporphyrinogen decarboxylase
Probab=91.64 E-value=7.2 Score=38.28 Aligned_cols=70 Identities=16% Similarity=0.312 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHH----HHHHhc-------CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DSVLSM-------GPTIIYNVPSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~----~~va~~-------~PiilYn~P~~tG~~ls~~~l~~La 204 (356)
|+.++++++...++||+.+.+.-|.-...|.++..+|. +.|.+. .|++++. +|.. ..+..++
T Consensus 178 t~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~----cG~~---~~~~~~~ 250 (345)
T PLN02433 178 TDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYA----NGSG---GLLERLA 250 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe----CCCH---HHHHHHH
Confidence 55567777877889999998888855556776665444 566553 2566664 3442 5677788
Q ss_pred cCC-CEEEE
Q 018443 205 QSP-NLAGV 212 (356)
Q Consensus 205 ~~p-nivGi 212 (356)
+.+ +++++
T Consensus 251 ~~~~~~i~~ 259 (345)
T PLN02433 251 GTGVDVIGL 259 (345)
T ss_pred hcCCCEEEc
Confidence 754 67665
No 140
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.46 E-value=5 Score=37.94 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=88.0
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSN 134 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~ 134 (356)
-.|+-+. +++.+ .++.|.+-+..+++.+.+.|++.|.+.=|+|- +++++-.++++.+.+..+. ++|+-++. ++
T Consensus 125 ~~G~~v~-~~~~~-~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~l~~H~-Hn 198 (268)
T cd07940 125 SHGLDVE-FSAED-ATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPNIKVPISVHC-HN 198 (268)
T ss_pred HcCCeEE-Eeeec-CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCCCceeEEEEe-cC
Confidence 3454433 44433 46689999999999999999999999999996 7999999999998887753 36665554 66
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC----CCCCHHHHHHHHHHHH
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFDSVL 177 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y----~~~s~~~l~~y~~~va 177 (356)
+..-++.-+..|.++|++.+=..---. +.+.-|+++.+++..-
T Consensus 199 ~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 199 DLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 788899999999999999885554433 3456678887776554
No 141
>PLN02591 tryptophan synthase
Probab=91.46 E-value=4.2 Score=38.36 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 117 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~ 117 (356)
-++++.++.+.++|++|+++. -|..||..++.+.+
T Consensus 93 ~G~~~F~~~~~~aGv~Gviip-------DLP~ee~~~~~~~~ 127 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVP-------DLPLEETEALRAEA 127 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeC-------CCCHHHHHHHHHHH
Confidence 378888999999999999987 34555555555444
No 142
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=91.43 E-value=11 Score=36.32 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccC----cccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCHHHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-----TGSNSTREAIHAT 143 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~Gs----tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-----vg~~st~~ai~la 143 (356)
.|...+...+..+.+.|++.+++++. .|+......- ++++...+.-.-++-| ++ ..+.+.++.++..
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~---dLv~li~~~~~~~i~v-a~yPeghp~~~~~~~dl~~L 169 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYAS---DLVTLLKSVADFDISV-AAYPEVHPEAKSAQADLINL 169 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHH---HHHHHHHHhCCCccce-eeCCCCCCCCCCHHHHHHHH
Confidence 49999999999999999999877652 2333333333 4444333321112211 11 1234566677777
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCCHHHHHHHhc
Q 018443 144 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P-----------~~tG~~ls~~~l~~La~ 205 (356)
++=.++||| .+++-|+| +.+.+.+|.+.+.+. +||+.==.| ..+|+.++.+++++|.+
T Consensus 170 k~K~~aGA~-~~iTQ~~F---d~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~ 241 (296)
T PRK09432 170 KRKVDAGAN-RAITQFFF---DVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDG 241 (296)
T ss_pred HHHHHcCCC-eeeccccc---chHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHh
Confidence 777789999 55566777 667788888888765 576543222 23455555555555543
No 143
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=91.29 E-value=1.6 Score=43.49 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=64.1
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
+.+..+++.|++||.|.|+-|-...-.. --..++..+++.+.+++|||+.=|=.+-.+. + .|-.+|||++++--|
T Consensus 236 ~dA~~a~~~Gvd~I~VsnhGGrqld~~~-~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv---~-KALALGA~aV~iGr~ 310 (367)
T PLN02493 236 EDARIAIQAGAAGIIVSNHGARQLDYVP-ATISALEEVVKATQGRIPVFLDGGVRRGTDV---F-KALALGASGIFIGRP 310 (367)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCch-hHHHHHHHHHHHhCCCCeEEEeCCcCcHHHH---H-HHHHcCCCEEEEcHH
Confidence 3455778899999999999886432221 1245555666767789999874432222222 2 345689999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018443 160 YYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 160 ~y~~---~s~~~l~~y~~~va~~ 179 (356)
+.+. ..++++.++.+.+.+.
T Consensus 311 ~l~~l~~~G~~gv~~~l~~l~~e 333 (367)
T PLN02493 311 VVFSLAAEGEAGVRKVLQMLRDE 333 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 8643 4678888888877665
No 144
>PLN02428 lipoic acid synthase
Probab=91.28 E-value=2.6 Score=41.75 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCEEEEccCcccc-------cCCCHHHHHHHHHHHHHHhCC---CcEEEEecCCCCHHHHHHHHHHHHH
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEG-------QLMSWDEHIMLIGHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~-------~~Lt~eEr~~li~~~~~~~~g---rvpVi~gvg~~st~~ai~lar~a~~ 148 (356)
..+++.+.++|++.+-.+--|.+- ...+.+++.++++.+.+...| +.-+|+|.| .+.+|.++.++...+
T Consensus 195 ~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLG-ET~Edv~e~l~~Lre 273 (349)
T PLN02428 195 LGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLG-ETDEEVVQTMEDLRA 273 (349)
T ss_pred HHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecC-CCHHHHHHHHHHHHH
Confidence 445556666777765444333221 335667777777766665333 233566774 567777777777777
Q ss_pred cCCCEEEE
Q 018443 149 VGMHAALH 156 (356)
Q Consensus 149 ~Gadavlv 156 (356)
+|+|-+.+
T Consensus 274 lgvd~vti 281 (349)
T PLN02428 274 AGVDVVTF 281 (349)
T ss_pred cCCCEEee
Confidence 77776654
No 145
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.26 E-value=4.3 Score=40.29 Aligned_cols=99 Identities=6% Similarity=-0.082 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhC-CCcEEEEec---CCCCHHHHHHHHHHHHHcC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~-grvpVi~gv---g~~st~~ai~lar~a~~~G 150 (356)
+-++..++.|++.+.+..++++. ...|.+|-.+.+..+++.+. ....|.++. +..+.+..++.++.+.++|
T Consensus 76 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 155 (365)
T TIGR02660 76 ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG 155 (365)
T ss_pred HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC
Confidence 33556667788877777777763 34566665555555555433 123444443 2335677777777777777
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 151 MHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 151 adavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+|.+.+. =..+..+++++.+.++.+.+.
T Consensus 156 a~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 156 ADRFRFA-DTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred cCEEEEc-ccCCCCCHHHHHHHHHHHHHh
Confidence 7765432 345556777777777777665
No 146
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=91.22 E-value=7.8 Score=36.94 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 149 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~ 149 (356)
.+..|.+-+.+.++.+.+.|++.|.+.-|+|- +++++-.++++.+.+..+ ++|+-++. +++.--++.-+-.|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~-~~~i~~H~-Hnd~GlA~AN~laA~~a 217 (274)
T cd07938 143 EGEVPPERVAEVAERLLDLGCDEISLGDTIGV---ATPAQVRRLLEAVLERFP-DEKLALHF-HDTRGQALANILAALEA 217 (274)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCc---cCHHHHHHHHHHHHHHCC-CCeEEEEE-CCCCChHHHHHHHHHHh
Confidence 45789999999999999999999999999997 789999999999888764 46776665 56788899999999999
Q ss_pred CCCEEEEcCCC----------CCCCCHHHHHHHHH
Q 018443 150 GMHAALHINPY----------YGKTSLEGLISHFD 174 (356)
Q Consensus 150 Gadavlv~pP~----------y~~~s~~~l~~y~~ 174 (356)
|++.+=..--- .+...-|+++.+++
T Consensus 218 Ga~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~ 252 (274)
T cd07938 218 GVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLE 252 (274)
T ss_pred CCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHH
Confidence 99988654331 23345566666554
No 147
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.22 E-value=2.6 Score=39.22 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
.+.++..++++.+.++|+|.+.+. ...+..+++++.++++.+.+.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLK-DTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec-hhcCCcCHHHHHHHHHHHHHh
Confidence 445555555555555555555432 334445555555555555544
No 148
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=91.20 E-value=2.3 Score=40.95 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gst-GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
|.+.+.++++...+.|+++|.++... -+...+++ +.++.+++.++ +||++..- .+ .+.++.++++|+|
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~----~~i~~l~~~~~--~pvivK~v-~s----~~~a~~a~~~G~d 195 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTW----DDLAWLRSQWK--GPLILKGI-LT----PEDALRAVDAGAD 195 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCH----HHHHHHHHhcC--CCEEEeec-CC----HHHHHHHHHCCCC
Confidence 77888899999999999999875433 33333333 45666666553 68877521 22 4558899999999
Q ss_pred EEEEcC
Q 018443 153 AALHIN 158 (356)
Q Consensus 153 avlv~p 158 (356)
++.+..
T Consensus 196 ~I~v~~ 201 (299)
T cd02809 196 GIVVSN 201 (299)
T ss_pred EEEEcC
Confidence 999874
No 149
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.13 E-value=4.6 Score=39.70 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
..+.+.+.++++.+.+.|++.|++.-|.| .|++++-.++++.+.+..+.++|+=++. +++..-++..+..|.++|+
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~-HnnlGla~ANslaAi~aGa 214 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAG---AMLPDDVRDRVRALKAVLKPETQVGFHA-HHNLSLAVANSIAAIEAGA 214 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCC---CCCHHHHHHHHHHHHHhCCCCceEEEEe-CCCCchHHHHHHHHHHhCC
Confidence 57788899999999899999999988988 6888888888888888776566765544 5678888888888889999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHH
Q 018443 152 HAALHINPYYG----KTSLEGLISHF 173 (356)
Q Consensus 152 davlv~pP~y~----~~s~~~l~~y~ 173 (356)
+.+=..---++ .++-|.+..++
T Consensus 215 ~~iD~Sl~G~G~~aGN~~~E~lv~~l 240 (333)
T TIGR03217 215 TRIDASLRGLGAGAGNAPLEVFVAVL 240 (333)
T ss_pred CEEEeecccccccccCccHHHHHHHH
Confidence 88755543332 23345555443
No 150
>PLN02826 dihydroorotate dehydrogenase
Probab=91.04 E-value=2.2 Score=43.18 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc-------------cccCCCH----HHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTG-------------EGQLMSW----DEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstG-------------E~~~Lt~----eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
++.+.+..+++.+++.|++||++.-||- |.--||- +-=.+++..+.+.+++++|||+.-|=.+
T Consensus 273 l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~s 352 (409)
T PLN02826 273 LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSS 352 (409)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 3445788889999999999998766542 1112331 1135566677777778889886555556
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
-+++++..+ +||++|.+-..+++
T Consensus 353 g~Da~e~i~----AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 353 GEDAYKKIR----AGASLVQLYTAFAY 375 (409)
T ss_pred HHHHHHHHH----hCCCeeeecHHHHh
Confidence 778877654 89999999877554
No 151
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=91.02 E-value=1.9 Score=40.93 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=63.3
Q ss_pred HHHHHHHcCCCEEEEcCC----CCC-----CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH----HHHHhcC
Q 018443 142 ATEQGFAVGMHAALHINP----YYG-----KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV----IHTMAQS 206 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP----~y~-----~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~----l~~La~~ 206 (356)
.|+.++++|+|++++... .++ ..|-++++.|-++|++. .|+++=|.|. .++. +++. ..+|.+.
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf-~sy~-~~e~a~~na~rl~~e 104 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPF-MSYA-TPEQALKNAARVMQE 104 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCc-CCCC-CHHHHHHHHHHHHHH
Confidence 467888999999998653 222 36889999999999997 6999999994 5665 4654 4455565
Q ss_pred CCEEEEeecCchh---hHhhhhCCCeEE
Q 018443 207 PNLAGVKECVGND---RVEHYTGNGIVV 231 (356)
Q Consensus 207 pnivGiK~s~~d~---~i~~~~~~~~~v 231 (356)
-+..|+|.+.+.. ++..+...++.|
T Consensus 105 aGa~aVkiEgg~~~~~~i~~l~~~gIpV 132 (263)
T TIGR00222 105 TGANAVKLEGGEWLVETVQMLTERGVPV 132 (263)
T ss_pred hCCeEEEEcCcHhHHHHHHHHHHCCCCE
Confidence 7899999998852 344433334443
No 152
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.93 E-value=5.1 Score=38.17 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=55.1
Q ss_pred HHHHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhCC-CcEEEEec---------CCCCHHHHHHHHH
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNT---------GSNSTREAIHATE 144 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~g-rvpVi~gv---------g~~st~~ai~lar 144 (356)
+-++..++.|++.+-+.-+++|. ...|.+|-.+.+..+++.++. ...|.+++ +..+.+..++.++
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 34666777888888777777763 334445555544444443321 22232211 1224566666677
Q ss_pred HHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 145 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 145 ~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
.+.+.|+|.+-+.- ..+..++.++.+.++.+.+.
T Consensus 157 ~~~~~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 157 RLLDLGCDEISLGD-TIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHcCCCEEEECC-CCCccCHHHHHHHHHHHHHH
Confidence 76667776655432 34445666666666666554
No 153
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=90.88 E-value=4.9 Score=39.03 Aligned_cols=84 Identities=11% Similarity=-0.062 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC-CCEEEE--cCCCCC-----CCCHHHHHHHHHH
Q 018443 104 LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH--INPYYG-----KTSLEGLISHFDS 175 (356)
Q Consensus 104 ~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G-adavlv--~pP~y~-----~~s~~~l~~y~~~ 175 (356)
+...++..+-++...+.. .+.|||+.+.+.+.++-.+.++..++.| ||++-+ ..|... ..+.+.+.+-.++
T Consensus 73 n~g~~~~~~~i~~~~~~~-~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~ 151 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKG-PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEE 151 (310)
T ss_pred CcCHHHHHHHHHHHHhhc-CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHH
Confidence 344566666555443322 2479999988889999999999999998 999864 334321 1245667777777
Q ss_pred HHhc--CCeEEEeCC
Q 018443 176 VLSM--GPTIIYNVP 188 (356)
Q Consensus 176 va~~--~PiilYn~P 188 (356)
|.+. .|+++==.|
T Consensus 152 v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 152 VFTYFTKPLGVKLPP 166 (310)
T ss_pred HHHhcCCccEEecCC
Confidence 7765 587764434
No 154
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.87 E-value=12 Score=33.98 Aligned_cols=183 Identities=12% Similarity=0.039 Sum_probs=96.1
Q ss_pred cCceeEeeecccCCCCCCC-HHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE----e
Q 018443 56 ALRLITAIKTPYLPDGRFD-LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG----N 130 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID-~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~----g 130 (356)
.+|++...-|- +.|-++ .....+..+.+.+.|+.++-+ ++ . +.++.+.+. ..+|++. +
T Consensus 8 ~~~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~-~~--------~----~~~~~i~~~--~~iPil~~~~~~ 70 (219)
T cd04729 8 KGGLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA-NG--------V----EDIRAIRAR--VDLPIIGLIKRD 70 (219)
T ss_pred cCCeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc-CC--------H----HHHHHHHHh--CCCCEEEEEecC
Confidence 46777665554 455554 467899999999999988653 11 1 223333332 3678763 2
Q ss_pred cCC--CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 131 TGS--NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 131 vg~--~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
... ......++.++.+.++|+|.+++..+....+..+.+.++++.+.+. .|++. . ..+++...++.+.
T Consensus 71 ~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv-~-------v~t~~ea~~a~~~ 142 (219)
T cd04729 71 YPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA-D-------ISTLEEALNAAKL 142 (219)
T ss_pred CCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE-E-------CCCHHHHHHHHHc
Confidence 210 0011235688999999999888876544333323455555555544 45554 2 1355555555543
Q ss_pred -CCEEEEee---------cC-chh----hHhhhhCCCeEEEecCc-chhHhHHHHcCCceeecccccccHHHH
Q 018443 207 -PNLAGVKE---------CV-GND----RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTSNLVPGMM 263 (356)
Q Consensus 207 -pnivGiK~---------s~-~d~----~i~~~~~~~~~v~~G~d-~~~l~~~l~~Ga~G~is~~~n~~P~~~ 263 (356)
..++++.. .. .+. ++++..+-.+.+-.|-. ..-....+..|++|++.|++-+-++..
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~ 215 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHI 215 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhH
Confidence 23333221 00 111 12222222222233431 122234478999999988775544433
No 155
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=90.84 E-value=2.6 Score=38.81 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
...+.++.+++.|.+. .+..+.....+.+.+.++++.+.+.
T Consensus 109 ~~~~~v~~ak~~g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 109 RIEEAVKYAKELGYEV-AFGCEDASRTDPEELLELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHHHTTSEE-EEEETTTGGSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCce-EeCccccccccHHHHHHHHHHHHHc
Confidence 3344444445555443 2233333444555555555555554
No 156
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=90.71 E-value=5.3 Score=37.73 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 181 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P 181 (356)
+.+.+.++.|++.|.. +.+.+|+....+.+.+.+.++++.+..+
T Consensus 114 ~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 157 (268)
T cd07940 114 ERAVEAVEYAKSHGLD-VEFSAEDATRTDLDFLIEVVEAAIEAGA 157 (268)
T ss_pred HHHHHHHHHHHHcCCe-EEEeeecCCCCCHHHHHHHHHHHHHcCC
Confidence 3344555566666643 3345555555566666666666655533
No 157
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.64 E-value=1.8 Score=42.26 Aligned_cols=96 Identities=13% Similarity=0.200 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccC-------CCHH--------H----HHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQL-------MSWD--------E----HIMLIGHTVNCFGASVKVIGNTGSNSTREA 139 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~-------Lt~e--------E----r~~li~~~~~~~~grvpVi~gvg~~st~~a 139 (356)
...+..+.+.|+++|.+.|.-|=.+. ...+ + -...+..+.+... ++|||+.=|=.+-.++
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv 270 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDI 270 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHH
Confidence 45667788899999999875341100 0000 0 0122223333332 7898875544444444
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc
Q 018443 140 IHATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM 179 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~--~s~~~l~~y~~~va~~ 179 (356)
++ +..+|||+|.+..|++.. ..++++..|++.+.+.
T Consensus 271 ~k----al~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~e 308 (326)
T cd02811 271 AK----ALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEE 308 (326)
T ss_pred HH----HHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 43 344799999999996532 2788899999988775
No 158
>PTZ00413 lipoate synthase; Provisional
Probab=90.57 E-value=3.4 Score=41.36 Aligned_cols=77 Identities=10% Similarity=0.026 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCCEEEEccCccccc-------CCCHHHHHHHHHHHHHHhCCCc----EEEEecCCCCHHHHHHHHHHHH
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQ-------LMSWDEHIMLIGHTVNCFGASV----KVIGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~-------~Lt~eEr~~li~~~~~~~~grv----pVi~gvg~~st~~ai~lar~a~ 147 (356)
...++.+.++|++-+--|=-|.|-. .-|.+++.++++.+.+...+++ -+|+|.|. +.+|.++.++.+.
T Consensus 242 ~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~dLr 320 (398)
T PTZ00413 242 LKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLRDLR 320 (398)
T ss_pred HHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHHHHH
Confidence 4466666777777766655554422 2477888888887776533333 35778765 6888888888888
Q ss_pred HcCCCEEEE
Q 018443 148 AVGMHAALH 156 (356)
Q Consensus 148 ~~Gadavlv 156 (356)
++|+|-+-+
T Consensus 321 elGVDivtI 329 (398)
T PTZ00413 321 TAGVSAVTL 329 (398)
T ss_pred HcCCcEEee
Confidence 888887766
No 159
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.56 E-value=2.3 Score=41.69 Aligned_cols=83 Identities=10% Similarity=0.045 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-----ccccCCCHHH-HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTT-----GEGQLMSWDE-HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gst-----GE~~~Lt~eE-r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~ 147 (356)
+.+.+.+.++.+.+.|+++|-++-+. +. ...+.++ -.++++.+.+.+ ++||++=.+. ...+..+.++.++
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~-~g~~~~~~~~eil~~v~~~~--~iPV~vKl~p-~~~~~~~~a~~l~ 187 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDI-SGAEVEQRYLDILRAVKSAV--SIPVAVKLSP-YFSNLANMAKRLD 187 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC-ccccHHHHHHHHHHHHHhcc--CCcEEEEeCC-CchhHHHHHHHHH
Confidence 45667788888888899999885432 22 2233433 346666665544 5899998765 3457889999999
Q ss_pred HcCCCEEEEcCCC
Q 018443 148 AVGMHAALHINPY 160 (356)
Q Consensus 148 ~~Gadavlv~pP~ 160 (356)
+.|+|++.+..-.
T Consensus 188 ~~G~dgI~~~n~~ 200 (334)
T PRK07565 188 AAGADGLVLFNRF 200 (334)
T ss_pred HcCCCeEEEECCc
Confidence 9999999987654
No 160
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=90.53 E-value=7.8 Score=37.58 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCC--CHHHHH----HHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKT--SLEGLI----SHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~--s~~~l~----~y~~~va~~---~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
++-.+++++...++|||++.+..|.-... |++... -|++.+.+. .|++++.. |. +...+..+.+.
T Consensus 170 t~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c----G~--~~~~l~~~~~~ 243 (326)
T cd03307 170 TEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC----GN--TTPILEYIAQC 243 (326)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC----CC--ChhHHHHHHHc
Confidence 55567888888889999998888865443 666655 455677765 37777643 32 23456666654
Q ss_pred C-CEEEEeecCch-hhHhhhhCCCeEEEecCc
Q 018443 207 P-NLAGVKECVGN-DRVEHYTGNGIVVWSGND 236 (356)
Q Consensus 207 p-nivGiK~s~~d-~~i~~~~~~~~~v~~G~d 236 (356)
+ ++.++= ...| ...++..+++..++.|-|
T Consensus 244 g~d~~~~d-~~~dl~e~~~~~g~~~~i~Gnid 274 (326)
T cd03307 244 GFDGISVD-EKVDVKTAKEIVGGRAALIGNVS 274 (326)
T ss_pred CCCeeccc-ccCCHHHHHHHcCCceEEEeCCC
Confidence 2 444332 2223 233333444455444443
No 161
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.50 E-value=2.4 Score=38.83 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=44.5
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCH-HHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSW-DEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~-eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
..++.+.+.|++++++-+....+...+. ....++++.+.+.. ++||+++=|=.+.+++.+ +.+.|+|+|++..
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~----~l~~GadgV~vgS 186 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAA----ALALGADGVQMGT 186 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHH----HHHcCCcEEEEch
Confidence 3445566789999876442111111111 12345566555554 578887544333333333 3348999999998
Q ss_pred CCCCCC
Q 018443 159 PYYGKT 164 (356)
Q Consensus 159 P~y~~~ 164 (356)
......
T Consensus 187 ~l~~~~ 192 (236)
T cd04730 187 RFLATE 192 (236)
T ss_pred hhhcCc
Confidence 766543
No 162
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=90.45 E-value=3.5 Score=38.91 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=65.7
Q ss_pred HHHHHHHCCCCEEEEccC-cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 81 LVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~Gs-tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
+.++|.+.|+..+..+|+ -|-+.-+....-.+++. + ..++|||++.|=.+.++ +..|.++|+|++++-.-
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~---e--~~~vpVivdAGIgt~sD----a~~AmElGaDgVL~nSa 220 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII---E--NAKIPVIIDAGIGTPSE----ASQAMELGASGVLLNTA 220 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH---H--cCCCcEEEeCCcCCHHH----HHHHHHcCCCEEeecce
Confidence 556788899999999994 67777777666665553 3 34699999877655555 45678999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 018443 160 YYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 160 ~y~~~s~~~l~~y~~~va~ 178 (356)
.....++.++..-|+.-.+
T Consensus 221 IakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 221 VAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 7766677777776665544
No 163
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.45 E-value=2.1 Score=40.68 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018443 123 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRT 191 (356)
Q Consensus 123 grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p---------P~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~t 191 (356)
++.-++.++-+. --|+.++++|+|++++.. |.....|-+++..|.++|++. .|.++=|.| ..
T Consensus 14 g~~i~~~tayD~------~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~p-fg 86 (264)
T PRK00311 14 GEKIVMLTAYDY------PFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMP-FG 86 (264)
T ss_pred CCCEEEEeCCCH------HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCC-CC
Confidence 343345566543 346777888999998642 233456889999999999997 577778888 34
Q ss_pred CCCCCHHH----HHHHhcCCCEEEEeecCchh---hHhhhhCCCeEE
Q 018443 192 GQDIPPRV----IHTMAQSPNLAGVKECVGND---RVEHYTGNGIVV 231 (356)
Q Consensus 192 G~~ls~~~----l~~La~~pnivGiK~s~~d~---~i~~~~~~~~~v 231 (356)
++..+++. ..++.+--++.|+|.+.+.. +++.+.+.++.|
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV 133 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPV 133 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCE
Confidence 56677754 34455556899999998852 455544444443
No 164
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.42 E-value=5.6 Score=39.27 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccC----------------cccccCCCHHHHHHHHHHHHHHh----C--
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGT----------------TGEGQLMSWDEHIMLIGHTVNCF----G-- 122 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~Gs----------------tGE~~~Lt~eEr~~li~~~~~~~----~-- 122 (356)
.++.+.++++++ +..++|.|||-+.+. |.|+-- |.+-|.+++..+++.+ +
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGG-slenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGG-SLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCC-cHHHHHHHHHHHHHHHHHHhccc
Confidence 466666666665 445589999988763 333222 4577777666665544 3
Q ss_pred --CCcEEEEec-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 123 --ASVKVIGNT-------GSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 123 --grvpVi~gv-------g~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
.+.+|-+=+ ++.+.+|++++++.+++.|+|.+-+....+
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 344443322 234679999999999999999999887544
No 165
>PRK08999 hypothetical protein; Provisional
Probab=90.41 E-value=11 Score=36.30 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIG 129 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~ 129 (356)
.+...++..++.|++.+.+ --..++.+|..++++.+.+.+.. ++++|+
T Consensus 145 ~~~~~~~~~l~~g~~~vql-----R~k~~~~~~~~~~~~~l~~~~~~~~~~lii 193 (312)
T PRK08999 145 AFLARLERALAAGIRLIQL-----RAPQLPPAAYRALARAALGLCRRAGAQLLL 193 (312)
T ss_pred HHHHHHHHHHHCCCcEEEE-----eCCCCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 3556677777899998876 23357888888888887765432 344444
No 166
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.41 E-value=0.88 Score=45.36 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcc-cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstG-E~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
....++++.++++|++-|.+-|+|- +.+.-+......+.+.. +.. ++|||+|--. +.+ .++++.++|||+|
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~i-k~~--~ipVIaG~V~-t~e----~A~~l~~aGAD~V 212 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFI-YEL--DVPVIVGGCV-TYT----TALHLMRTGAAGV 212 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHH-HHC--CCCEEEeCCC-CHH----HHHHHHHcCCCEE
Confidence 3456788888999999999988762 22222211122233322 222 6899984422 233 4555667999999
Q ss_pred EEc
Q 018443 155 LHI 157 (356)
Q Consensus 155 lv~ 157 (356)
++-
T Consensus 213 ~VG 215 (368)
T PRK08649 213 LVG 215 (368)
T ss_pred EEC
Confidence 885
No 167
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=90.35 E-value=3.1 Score=40.51 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCH--------------------HHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSW--------------------DEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~--------------------eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
|.+.+....+.+.+.|+||+.+.=|+........ +--.+++..+.+.+++++|+| |+|+
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipII-GvGG 249 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPII-GVGG 249 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEE-EecC
Confidence 8889999999999999999988777664442221 223566777777777889887 5544
Q ss_pred -CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CC-HHHHHHHHHHHHh
Q 018443 134 -NSTREAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDSVLS 178 (356)
Q Consensus 134 -~st~~ai~lar~a~~~Gadavlv~pP~y~~-~s-~~~l~~y~~~va~ 178 (356)
.|.++++|... +||+++.+-.-.++. +. -++|.+...+..+
T Consensus 250 I~s~~DA~E~i~----aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 250 IETGEDALEFIL----AGASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred cCcHHHHHHHHH----cCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 46777888764 799999988875543 33 3556655555544
No 168
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=90.30 E-value=3.9 Score=40.23 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCcc----cccCC-----------CHHHHHHHHHHHHHHhCCC--cEE
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTG----EGQLM-----------SWDEHIMLIGHTVNCFGAS--VKV 127 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~GstG----E~~~L-----------t~eEr~~li~~~~~~~~gr--vpV 127 (356)
.+..+.+++.++ +..++|.|||=+.+..| +|.+= |.+-|.+++..+++.+... .||
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 355666655554 55568999998877643 12111 4677888777777665443 355
Q ss_pred EEecC-------CCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 128 IGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 128 i~gvg-------~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
.+=++ +.+.+|++++++..++.|+|.+-+....|
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~ 251 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAV 251 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 44333 35789999999999999999998876543
No 169
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=90.30 E-value=10 Score=34.82 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE--EEec--CCCCHHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV--IGNT--GSNSTREAIHATEQG 146 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV--i~gv--g~~st~~ai~lar~a 146 (356)
....+.++++++.-.+.|+.++++.. .+ ++.+.+..++ +++| ++|. |...++.-+..++.|
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p-----------~~---v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~A 79 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNP-----------SY---VPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEA 79 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCH-----------HH---HHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHH
Confidence 45678899999999999999998843 22 3333333332 4444 3443 666788889999999
Q ss_pred HHcCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCeE-EEeCCCCCCCCCCHHHHHHHhc---CCCEEEEeecCc
Q 018443 147 FAVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPTI-IYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 217 (356)
Q Consensus 147 ~~~Gadavlv~pP~y-~-~~s~~~l~~y~~~va~~---~Pii-lYn~P~~tG~~ls~~~l~~La~---~pnivGiK~s~~ 217 (356)
.+.|||.+-++.++- . ....+.+.+-.++|.++ .|+. |+. ++. ++.+.+.+.++ --+.-.||-|+|
T Consensus 80 v~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE----~~~-L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 80 IKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIE----TGL-LTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred HHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEe----cCC-CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 999999998887753 2 34667788888888875 3653 443 444 77777666654 356777998865
No 170
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.28 E-value=9.3 Score=37.38 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE----------ccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec--CCCCH-HH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIV----------GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GSNST-RE 138 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v----------~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv--g~~st-~~ 138 (356)
.-|.+.+.+-.....+.|+++|=+ .+..|.+...+++--.++++++++.++ ++||-+=+ |-... ..
T Consensus 75 gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~~~~ 153 (323)
T COG0042 75 GSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDDDIL 153 (323)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCccccc
Confidence 457788999999999999887654 467899999999999999999999887 77776533 32222 36
Q ss_pred HHHHHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHhcCC-e-EEEeCCCCCCCCCCHHHHHHHhcCCCEEEE
Q 018443 139 AIHATEQGFAVGMHAALHINPY----YGKTSLEGLISHFDSVLSMGP-T-IIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 212 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~----y~~~s~~~l~~y~~~va~~~P-i-ilYn~P~~tG~~ls~~~l~~La~~pnivGi 212 (356)
+.+.++.+++.|++++.|..=. |..+ .-.++..++.+..| + ++-| |--.+++...+..+.-++-|+
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~~~~~ipvi~N-----GdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKEAVPSIPVIAN-----GDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHHhCCCCeEEeC-----CCcCCHHHHHHHHHhhCCCEE
Confidence 8899999999999999987642 3222 23455555555544 3 3333 445677777777665443333
No 171
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.24 E-value=6.8 Score=37.31 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 149 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~ 149 (356)
.+..|.+-+.+.++.+.+.|++.|.+.=|.|- +++++-.++++.+.+.++ +|+=++. +++.--++.-+..|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~--~~l~~H~-Hnd~GlA~aN~laA~~a 216 (275)
T cd07937 143 SPVHTLEYYVKLAKELEDMGADSICIKDMAGL---LTPYAAYELVKALKKEVG--LPIHLHT-HDTSGLAVATYLAAAEA 216 (275)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhCC--CeEEEEe-cCCCChHHHHHHHHHHh
Confidence 47899999999999999999999999999996 679999999988888764 5665554 66788899999999999
Q ss_pred CCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018443 150 GMHAALHINPYYG----KTSLEGLISHFDS 175 (356)
Q Consensus 150 Gadavlv~pP~y~----~~s~~~l~~y~~~ 175 (356)
|++.+=..---.+ ..+-+++..+.+.
T Consensus 217 Ga~~vd~sv~GlG~~aGN~~~E~l~~~L~~ 246 (275)
T cd07937 217 GVDIVDTAISPLSGGTSQPSTESMVAALRG 246 (275)
T ss_pred CCCEEEEecccccCCcCChhHHHHHHHHHc
Confidence 9999876655443 2444666655543
No 172
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.22 E-value=1.7 Score=43.18 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=62.1
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
+..+++.|++||.|.++-|-...=... -.+.+..+++.+ ++|||+-=|=.+-.+.+ .|-.+|||+|++--|+.
T Consensus 250 a~~a~~~G~d~I~VSnhGGrqld~~~~-~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~----KALaLGA~aV~iGr~~l 322 (361)
T cd04736 250 AKRCIELGADGVILSNHGGRQLDDAIA-PIEALAEIVAAT--YKPVLIDSGIRRGSDIV----KALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHCCcCEEEECCCCcCCCcCCcc-HHHHHHHHHHHh--CCeEEEeCCCCCHHHHH----HHHHcCCCEEEECHHHH
Confidence 455678899999998887754321111 244444555555 38988854433444443 56789999999999986
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018443 162 GK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 162 ~~---~s~~~l~~y~~~va~~ 179 (356)
+. ..++++.++++.+.++
T Consensus 323 ~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 323 YGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 53 5789999999888765
No 173
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.20 E-value=0.82 Score=41.73 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred ceeEeeecccCCCCCCCHHHHHHHHH------------------------HHHHCCCCEEEEccCcccccCCCHHHHHHH
Q 018443 58 RLITAIKTPYLPDGRFDLEAYDDLVN------------------------MQIVNGAEGMIVGGTTGEGQLMSWDEHIML 113 (356)
Q Consensus 58 Gvi~al~TPf~~dg~ID~~~l~~~v~------------------------~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~l 113 (356)
|.=-.++=.+++||+||.+.++++++ .+++.|++.|+..|+. -+..|-.+.
T Consensus 85 GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~-----~~a~~g~~~ 159 (201)
T PF03932_consen 85 GADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGA-----PTALEGIEN 159 (201)
T ss_dssp T-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTS-----SSTTTCHHH
T ss_pred CCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCC-----CCHHHHHHH
Confidence 33333444455699999999988765 5678999999877766 233344555
Q ss_pred HHHHHHHhCCCcEEEEec--CCCCHHHHHH
Q 018443 114 IGHTVNCFGASVKVIGNT--GSNSTREAIH 141 (356)
Q Consensus 114 i~~~~~~~~grvpVi~gv--g~~st~~ai~ 141 (356)
++..++..++++.|++|- ...+..+-++
T Consensus 160 L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 160 LKELVEQAKGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp HHHHHHHHTTSSEEEEESS--TTTHHHHHH
T ss_pred HHHHHHHcCCCcEEEecCCCCHHHHHHHHH
Confidence 666777788999999974 4545544443
No 174
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.19 E-value=14 Score=34.79 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHCCCCEEEEc
Q 018443 77 AYDDLVNMQIVNGAEGMIVG 96 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~ 96 (356)
+++++++.+.++|++|+++.
T Consensus 103 G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC
Confidence 45666666666666666654
No 175
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.17 E-value=5.5 Score=37.68 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018443 112 MLIGHTVNCFGASVKVI--GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 112 ~li~~~~~~~~grvpVi--~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~ 178 (356)
+.++.+++. .++||+ .|+...+.++++++++.+.++||+++.+..-.|...+.++..+-++.+..
T Consensus 186 ~~l~~~~~~--~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~ 252 (267)
T PRK07226 186 ESFREVVEG--CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVH 252 (267)
T ss_pred HHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHh
Confidence 334444432 256764 45665578999999999999999999999888887888887777777654
No 176
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.17 E-value=3.4 Score=38.65 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHCCCCEEEEcc----CcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 77 AYDDLVNMQIVNGAEGMIVGG----TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~G----stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
.....++.+.+.|++.+++.+ +|.+++ . .++++.+.+.+ ++|||++=|-.+.++..++.+. .|+|
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~--d----~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~---~G~~ 222 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGY--D----LELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE---GGAD 222 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc--C----HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh---CCcc
Confidence 345566777789999998843 344554 2 35566666654 5899998777778877764333 7999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHH
Q 018443 153 AALHINPYY-GKTSLEGLISHFDS 175 (356)
Q Consensus 153 avlv~pP~y-~~~s~~~l~~y~~~ 175 (356)
++++..=.| ...+.+++.++.++
T Consensus 223 gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 223 AALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred EEeEhHHHHcCCCCHHHHHHHHHH
Confidence 999987765 45788888777653
No 177
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=90.14 E-value=1.7 Score=40.36 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~ 148 (356)
|..|.+.-.+.++.+.+.+++|+.+.| +.|| +.+|+.++++.+.+......|.++ |++ +..+.+.+ ..
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~----~~~~~~~~l~~i~~~lp~~~pr~l~G~~--~P~~i~~~----v~ 132 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGE----EKEERLEILEAIINNLPPDKPRYLLGVG--TPEEILEA----VY 132 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSS----HHHHHHHHHHHHHHCS-TTS-EEETTB---SHHHHHHH----HH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCC----CHHHHHHHHHHHHhhCCcccceeccCCC--CHHHHHHH----HH
Confidence 778888778888888887899999988 7777 889999999999998887778766 554 56665554 57
Q ss_pred cCCCEEEEcCC
Q 018443 149 VGMHAALHINP 159 (356)
Q Consensus 149 ~Gadavlv~pP 159 (356)
+|+|-+-..-|
T Consensus 133 ~GvD~fDs~~p 143 (238)
T PF01702_consen 133 LGVDLFDSSYP 143 (238)
T ss_dssp TT--EEEESHH
T ss_pred cCCcEEcchHH
Confidence 89997665533
No 178
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.13 E-value=16 Score=34.76 Aligned_cols=45 Identities=18% Similarity=0.032 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCCHHHHHHHHHHHHhc
Q 018443 135 STREAIHATEQGFAVGMHAALHI-NPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~-pP~y~~~s~~~l~~y~~~va~~ 179 (356)
..+...+.++.|++.|......+ ...-...+.+.+.+..+++.+.
T Consensus 116 ~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (275)
T cd07937 116 DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM 161 (275)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 34555555555555553322111 0111233445555555555444
No 179
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.10 E-value=2.3 Score=40.24 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=53.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEEe-------c-CCCC
Q 018443 65 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGN-------T-GSNS 135 (356)
Q Consensus 65 TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~g-------v-g~~s 135 (356)
|+|.+++.= +.+...++..++.|++.+-+.--.| .+..++..+.+..+++.+. ..+|+++- + +..+
T Consensus 84 ~~~~~~~~~--~~~~~~ve~A~~~Gad~v~~~~~~g---~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 84 TSLSPDPND--KVLVGTVEEAIKLGADAVSVHVNVG---SETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred CCCCCCCCc--ceeeecHHHHHHcCCCEEEEEEecC---ChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 677554432 5566678888999999876644444 2235666666666666542 45677664 2 2234
Q ss_pred HHHHHHHHHHHHHcCCCEE
Q 018443 136 TREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadav 154 (356)
.++..+.++.+.+.|||.+
T Consensus 159 ~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 159 PEVVAHAARVAAELGADIV 177 (267)
T ss_pred HHHHHHHHHHHHHHCCCEE
Confidence 4455555788888899888
No 180
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.08 E-value=8.5 Score=36.85 Aligned_cols=77 Identities=12% Similarity=-0.034 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC--CCEEEE--cCCCCCC------CCHHHHHHHHHH
Q 018443 106 SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG--MHAALH--INPYYGK------TSLEGLISHFDS 175 (356)
Q Consensus 106 t~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G--adavlv--~pP~y~~------~s~~~l~~y~~~ 175 (356)
..++..+.++...+. ...|+++++.+.+.++..+.++..++++ +|++-+ ..|.... .+.+.+.+.+++
T Consensus 74 g~~~~~~~~~~~~~~--~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~ 151 (300)
T TIGR01037 74 GVEAFLEELKPVREE--FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKA 151 (300)
T ss_pred CHHHHHHHHHHHhcc--CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHH
Confidence 445554444433221 2469999998889999999999999864 898876 4454321 244566666666
Q ss_pred HHhc--CCeEE
Q 018443 176 VLSM--GPTII 184 (356)
Q Consensus 176 va~~--~Piil 184 (356)
+.+. .||.+
T Consensus 152 vr~~~~~pv~v 162 (300)
T TIGR01037 152 VKDKTDVPVFA 162 (300)
T ss_pred HHHhcCCCEEE
Confidence 6654 35443
No 181
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.06 E-value=3.1 Score=41.00 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCc----ccccCCCHHHHHHHHHHHHHHhCC---CcEEEEecCCCC-HHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTGSNS-TREAIHAT 143 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~Gst----GE~~~Lt~eEr~~li~~~~~~~~g---rvpVi~gvg~~s-t~~ai~la 143 (356)
+=.++.+.+.++.+- .++++|-++=+. |....-..+.-.++++.+.+.++. ++||++=++... .++..+.+
T Consensus 153 ~~~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia 231 (344)
T PRK05286 153 EDAVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIA 231 (344)
T ss_pred ccCHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHH
Confidence 346677778888764 479998876432 333333455666788888877753 589999887543 35799999
Q ss_pred HHHHHcCCCEEEEcCCCC
Q 018443 144 EQGFAVGMHAALHINPYY 161 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y 161 (356)
+.+++.|+|++.+.....
T Consensus 232 ~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 232 DLALEHGIDGVIATNTTL 249 (344)
T ss_pred HHHHHhCCcEEEEeCCcc
Confidence 999999999999988654
No 182
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.01 E-value=13 Score=34.76 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
...+++.+.+.|++-+++...+.....- ..-.++++.+.+.+ ++||+++-|-.+.+++.++.. .|++++++-
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~~--~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viig 103 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEGR--DTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLR----AGADKVSIN 103 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccC--cchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHH----cCCCEEEEC
Confidence 3345555668999999999987632211 34456666666655 589999877766666655543 799999988
Q ss_pred CCCCCCC
Q 018443 158 NPYYGKT 164 (356)
Q Consensus 158 pP~y~~~ 164 (356)
...+..+
T Consensus 104 t~~l~~p 110 (253)
T PRK02083 104 SAAVANP 110 (253)
T ss_pred hhHhhCc
Confidence 7766543
No 183
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.94 E-value=15 Score=33.48 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
.|.+.....++.+++.|+..+=+. |+..+-.+.++.+.+..+ + +++|+|+--+.+ .++.|.++|++
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit--------~~tp~a~~~I~~l~~~~~-~--~~vGAGTVl~~e---~a~~ai~aGA~ 78 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEIT--------LRTPAALDAIRAVAAEVE-E--AIVGAGTILNAK---QFEDAAKAGSR 78 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe--------CCCccHHHHHHHHHHHCC-C--CEEeeEeCcCHH---HHHHHHHcCCC
Confidence 388999999999999999998553 344556677777776653 3 788888776555 56788889998
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeecCch-----hhHhhhh--
Q 018443 153 AALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYT-- 225 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s~~d-----~~i~~~~-- 225 (356)
.++. |.+ .+++.++.++ |+.|...|. +||..+.+-.+..- --+|.--.+ ..++.+.
T Consensus 79 FivS--P~~----~~~vi~~a~~---------~~i~~iPG~-~TptEi~~A~~~Ga-~~vK~FPa~~~GG~~yikal~~p 141 (201)
T PRK06015 79 FIVS--PGT----TQELLAAAND---------SDVPLLPGA-ATPSEVMALREEGY-TVLKFFPAEQAGGAAFLKALSSP 141 (201)
T ss_pred EEEC--CCC----CHHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCCC-CEEEECCchhhCCHHHHHHHHhh
Confidence 7763 544 4677777543 333334454 77766655544322 225653322 2233332
Q ss_pred CCCeEEE--ecCcchhHhHHHHcCCceeecccccccHHH
Q 018443 226 GNGIVVW--SGNDDQCHDARWNHGATGVISVTSNLVPGM 262 (356)
Q Consensus 226 ~~~~~v~--~G~d~~~l~~~l~~Ga~G~is~~~n~~P~~ 262 (356)
-+++.++ .|-+..-+..++.+|+..+++ .++++|+.
T Consensus 142 lp~~~l~ptGGV~~~n~~~~l~ag~~~~~g-gs~l~~~~ 179 (201)
T PRK06015 142 LAGTFFCPTGGISLKNARDYLSLPNVVCVG-GSWVAPKE 179 (201)
T ss_pred CCCCcEEecCCCCHHHHHHHHhCCCeEEEE-chhhCCch
Confidence 2445544 355444455678888886666 55666643
No 184
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=89.92 E-value=5.8 Score=39.14 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=81.7
Q ss_pred cCceeEeeec-cc--CCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc--cccCCCHHHHHHHHHHHHH-HhCCCcEEEE
Q 018443 56 ALRLITAIKT-PY--LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG--EGQLMSWDEHIMLIGHTVN-CFGASVKVIG 129 (356)
Q Consensus 56 ~~Gvi~al~T-Pf--~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstG--E~~~Lt~eEr~~li~~~~~-~~~grvpVi~ 129 (356)
-.|+|..+-. =+ +..|+++......-+++.++.|++++-++---| +...+ .+++.+.++.+.+ |-.-.+|+++
T Consensus 83 ~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~-~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 83 NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAI-NDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred CCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHH-HHHHHHHHHHHHHHHHHcCCceEE
Confidence 4667766421 11 112345555555567888999999876654433 11111 2445545555555 4556889877
Q ss_pred ec-------CC--------CCHHHHHHHHHHHHH--cCCCEEEEcCCCCC-----------CCCHHHHHHHHHHHHhc--
Q 018443 130 NT-------GS--------NSTREAIHATEQGFA--VGMHAALHINPYYG-----------KTSLEGLISHFDSVLSM-- 179 (356)
Q Consensus 130 gv-------g~--------~st~~ai~lar~a~~--~Gadavlv~pP~y~-----------~~s~~~l~~y~~~va~~-- 179 (356)
-+ .. ...+-.++.+|.+.+ +|+|-+=+-.|.-. ..++++..++|+++.++
T Consensus 162 E~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~ 241 (340)
T PRK12858 162 EPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD 241 (340)
T ss_pred EEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC
Confidence 41 11 235667888888885 99999988777432 13788999999999987
Q ss_pred CCeEEEe
Q 018443 180 GPTIIYN 186 (356)
Q Consensus 180 ~PiilYn 186 (356)
.|+++--
T Consensus 242 ~P~vvls 248 (340)
T PRK12858 242 LPFIFLS 248 (340)
T ss_pred CCEEEEC
Confidence 5777753
No 185
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.73 E-value=1.7 Score=42.39 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHH-------HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 146 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eE-------r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a 146 (356)
+++.+..+++.+.+.|++.|.+=|-|.+...++..+ .-+.+..+.+.+ .++|||++=+=.+.+++.+..
T Consensus 139 ~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-~~ipVi~NGdI~s~~da~~~l--- 214 (318)
T TIGR00742 139 SYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDF-PHLTIEINGGIKNSEQIKQHL--- 214 (318)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhC-CCCcEEEECCcCCHHHHHHHH---
Confidence 346677889999999999999988875333343322 223344455544 268998654444666666654
Q ss_pred HHcCCCEEEEcCCCCCCC
Q 018443 147 FAVGMHAALHINPYYGKT 164 (356)
Q Consensus 147 ~~~Gadavlv~pP~y~~~ 164 (356)
. |+|+||+.-..+..|
T Consensus 215 -~-g~dgVMigRgal~nP 230 (318)
T TIGR00742 215 -S-HVDGVMVGREAYENP 230 (318)
T ss_pred -h-CCCEEEECHHHHhCC
Confidence 2 899999998877655
No 186
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.70 E-value=14 Score=33.88 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH-HHHHHHc
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHA-TEQGFAV 149 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~l-ar~a~~~ 149 (356)
..+..+...++++.|.+.|++-|=+. ++..+.+++..+-+ +.+.... .++.+ ...... +.++. .+.+.+.
T Consensus 9 ~~~~~~~k~~i~~~L~~~Gv~~iEvg-----~~~~~~~~~~~v~~-~~~~~~~-~~~~~-~~~~~~-~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 9 VAFSTEEKLEIAKALDEAGVDYIEVG-----FPFASEDDFEQVRR-LREALPN-ARLQA-LCRANE-EDIERAVEAAKEA 79 (237)
T ss_dssp TT--HHHHHHHHHHHHHHTTSEEEEE-----HCTSSHHHHHHHHH-HHHHHHS-SEEEE-EEESCH-HHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHhCCCEEEEc-----ccccCHHHHHHhhh-hhhhhcc-cccce-eeeehH-HHHHHHHHhhHhc
Confidence 35778889999999999999999765 66677777766654 4444333 33332 222333 33444 6667889
Q ss_pred CCCEEEEcCCCCC-------CCCHHHHHHHHHHHHhc----CCeEEEeCCCCCCCCCCHHHHHHHh----c-CCCEEEEe
Q 018443 150 GMHAALHINPYYG-------KTSLEGLISHFDSVLSM----GPTIIYNVPSRTGQDIPPRVIHTMA----Q-SPNLAGVK 213 (356)
Q Consensus 150 Gadavlv~pP~y~-------~~s~~~l~~y~~~va~~----~PiilYn~P~~tG~~ls~~~l~~La----~-~pnivGiK 213 (356)
|+|.+-+..|.-- ..+.++..+-..++.+. ..-+-++.+..+. .+++.+.+++ + -+..+.++
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASR--TDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG--SSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc--ccHHHHHHHHHHHHHcCCeEEEee
Confidence 9999988766421 22334555444444432 4455666665443 4566555544 3 47889999
Q ss_pred ecCch
Q 018443 214 ECVGN 218 (356)
Q Consensus 214 ~s~~d 218 (356)
|+.|-
T Consensus 158 Dt~G~ 162 (237)
T PF00682_consen 158 DTVGI 162 (237)
T ss_dssp ETTS-
T ss_pred CccCC
Confidence 99986
No 187
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=89.68 E-value=0.84 Score=44.28 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 75 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 75 ~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
.+.+.++++.+.+.|++.|.|=|=|.+-.+-. .-.-+.+..+.+.++ +|||++=+-.|.+++.+..++ .|+|+|
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~-~a~w~~i~~i~~~~~--ipvi~NGdI~s~~d~~~~~~~---tg~dgv 210 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRYKG-PADWEAIAEIKEALP--IPVIANGDIFSPEDAERMLEQ---TGADGV 210 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS----HHHHHHCHHC-T--SEEEEESS--SHHHHHHHCCC---H-SSEE
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcCCc-ccchHHHHHHhhccc--ceeEEcCccCCHHHHHHHHHh---cCCcEE
Confidence 56788999999999999999999777766655 333444456666664 999998777788887776543 499999
Q ss_pred EEcCCCCCC
Q 018443 155 LHINPYYGK 163 (356)
Q Consensus 155 lv~pP~y~~ 163 (356)
|+.--.+..
T Consensus 211 MigRgal~n 219 (309)
T PF01207_consen 211 MIGRGALGN 219 (309)
T ss_dssp EESHHHCC-
T ss_pred EEchhhhhc
Confidence 997544433
No 188
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=89.64 E-value=2.1 Score=39.20 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
..+++.+.+.|++.+++..-+.+..... ...++++.+.+.+ ++||+++=|-.+.++..++ .+.|||++++-.
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g--~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~----~~~Gadgv~ig~ 219 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG--PNFELTKELVKAV--NVPVIASGGVSSIDDLIAL----KKLGVYGVIVGK 219 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC--CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHH----HHCCCCEEEEeH
Confidence 4577777899999999887777765433 2356666666653 6899998887777776543 348999999865
Q ss_pred CCC
Q 018443 159 PYY 161 (356)
Q Consensus 159 P~y 161 (356)
-.|
T Consensus 220 a~~ 222 (230)
T TIGR00007 220 ALY 222 (230)
T ss_pred HHH
Confidence 443
No 189
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=89.61 E-value=6 Score=41.05 Aligned_cols=99 Identities=8% Similarity=0.112 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.-|.+-+.++++.+.+.|++.|.+.-|+|- |++++-.++++.+.+.++.++||=+++ +++.--++.-+-.|.++||
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDtaGl---l~P~~~~~LV~~Lk~~~~~~ipI~~H~-Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDMAAL---LKPQPAYDIVKGIKEACGEDTRINLHC-HSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCccC---CCHHHHHHHHHHHHHhCCCCCeEEEEe-CCCCCcHHHHHHHHHHcCC
Confidence 458999999999999999999999999994 899999999999998876578887776 4567778888888999999
Q ss_pred CEEEEc-CCCCCCC---CHHHHHHHHH
Q 018443 152 HAALHI-NPYYGKT---SLEGLISHFD 174 (356)
Q Consensus 152 davlv~-pP~y~~~---s~~~l~~y~~ 174 (356)
|.+=.. .+.-..+ +-++++..++
T Consensus 227 d~vDtai~Glg~~aGn~atE~vv~~L~ 253 (499)
T PRK12330 227 DVVDTAISSMSLGPGHNPTESLVEMLE 253 (499)
T ss_pred CEEEeecccccccccchhHHHHHHHHH
Confidence 988443 3433333 3355555443
No 190
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=89.46 E-value=15 Score=35.83 Aligned_cols=105 Identities=13% Similarity=0.026 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCc-EEEEecCCCCHHHHHHHHHHHHHcC--
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGFAVG-- 150 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grv-pVi~gvg~~st~~ai~lar~a~~~G-- 150 (356)
|+++.+..+++|++.|.+-+.+.+..- ...+..+|.+-...+.+..+-.. +..+..+..+.+...+.++.....+
T Consensus 159 n~~~~~~a~~~L~~~G~~~i~~i~~~~--~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~ 236 (333)
T COG1609 159 NFAGAYLATEHLIELGHRRIAFIGGPL--DSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEP 236 (333)
T ss_pred hHHHHHHHHHHHHHCCCceEEEEeCCC--ccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCC
Confidence 678899999999999988765555444 66677899998888888776555 5666666668888888888887654
Q ss_pred -CCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CC----eEEEeC
Q 018443 151 -MHAALHINPYYGKTSLEGLISHFDSVLSM---GP----TIIYNV 187 (356)
Q Consensus 151 -adavlv~pP~y~~~s~~~l~~y~~~va~~---~P----iilYn~ 187 (356)
.+|+++. ++.-..-.++++.+. .| |+=||.
T Consensus 237 ~ptAif~~-------nD~~Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 237 RPTAIFCA-------NDLMALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred CCcEEEEc-------CcHHHHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 6788876 444455555555554 45 666765
No 191
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=89.45 E-value=4 Score=39.14 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV 127 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV 127 (356)
.++..++.|++.+.+=+++ ++.+|..++.+.+++.+.. .++|
T Consensus 89 ~i~~Al~~G~tsVm~d~s~-----~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 89 KIKEALEIGFTSVMFDGSH-----LPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HHHHHHHcCCCEEEEcCCC-----CCHHHHHHHHHHHHHHHHHcCCeE
Confidence 5666788999999987775 6889999999999887643 4565
No 192
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.43 E-value=3.2 Score=41.49 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=84.8
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
-.|+.+.+ ++- ..++.|.+-+.++++...+.|++.|.++-|+| .+++++-.++++.+.+.. ++|+=++. +++
T Consensus 127 ~~G~~v~~-~~e-d~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G---~~~P~~v~~lv~~l~~~~--~~~l~~H~-Hnd 198 (378)
T PRK11858 127 DHGLYVSF-SAE-DASRTDLDFLIEFAKAAEEAGADRVRFCDTVG---ILDPFTMYELVKELVEAV--DIPIEVHC-HND 198 (378)
T ss_pred HCCCeEEE-Eec-cCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCHHHHHHHHHHHHHhc--CCeEEEEe-cCC
Confidence 35655443 332 35678999999999999999999999999998 789999999999998876 46665554 677
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 174 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~ 174 (356)
..-++.-+-.|.++||+.+-..---.+ ..+-++++.+.+
T Consensus 199 ~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 199 FGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred cCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHHHH
Confidence 888999999999999999876654432 244566665554
No 193
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.42 E-value=17 Score=33.26 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=101.8
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
..++++.+-.. |.+.....++.+++.|++.+=+.= +.++-.+.++.+.+..+ + +++|+|+--
T Consensus 7 ~~~liaVlr~~-------~~e~a~~~~~al~~~Gi~~iEit~--------~t~~a~~~i~~l~~~~~-~--~~vGAGTVl 68 (204)
T TIGR01182 7 EAKIVPVIRID-------DVDDALPLAKALIEGGLRVLEVTL--------RTPVALDAIRLLRKEVP-D--ALIGAGTVL 68 (204)
T ss_pred hCCEEEEEecC-------CHHHHHHHHHHHHHcCCCEEEEeC--------CCccHHHHHHHHHHHCC-C--CEEEEEeCC
Confidence 35566665433 889999999999999999986533 44667777888877664 3 677777665
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeec
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 215 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s 215 (356)
+.+. ++.|.++||+.++ .|.+ ..++.++.++ |+.|...|. ++|..+.+-.+.. .--+|.-
T Consensus 69 ~~~~---a~~a~~aGA~Fiv--sP~~----~~~v~~~~~~---------~~i~~iPG~-~TptEi~~A~~~G-a~~vKlF 128 (204)
T TIGR01182 69 NPEQ---LRQAVDAGAQFIV--SPGL----TPELAKHAQD---------HGIPIIPGV-ATPSEIMLALELG-ITALKLF 128 (204)
T ss_pred CHHH---HHHHHHcCCCEEE--CCCC----CHHHHHHHHH---------cCCcEECCC-CCHHHHHHHHHCC-CCEEEEC
Confidence 5544 6777889999884 4655 4567766543 233333464 6665555544332 1225643
Q ss_pred Cch-----hhHhhhhC--CCeEEE--ecCcchhHhHHHHcCCceeecccccccHH
Q 018443 216 VGN-----DRVEHYTG--NGIVVW--SGNDDQCHDARWNHGATGVISVTSNLVPG 261 (356)
Q Consensus 216 ~~d-----~~i~~~~~--~~~~v~--~G~d~~~l~~~l~~Ga~G~is~~~n~~P~ 261 (356)
-.+ ..++.+.. +++.++ .|-+..-+..++..|+.++..| ++++|+
T Consensus 129 PA~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~G-s~L~~~ 182 (204)
T TIGR01182 129 PAEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGG-SWLVPK 182 (204)
T ss_pred CchhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEC-hhhcCc
Confidence 222 22333322 445544 3554444556788999977655 455553
No 194
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.31 E-value=5.8 Score=38.47 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
+.++++.+++.|++-+.+.+.. .+ ++++...+. .++|++.|++ ++.++.++++|+|++.+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~-------p~---~~i~~lk~~---g~~v~~~v~s------~~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGN-------PG---KYIPRLKEN---GVKVIPVVAS------VALAKRMEKAGADAVIAE 136 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC-------cH---HHHHHHHHc---CCEEEEEcCC------HHHHHHHHHcCCCEEEEE
Confidence 3578888999999988764321 11 245444432 4788877754 456788999999999987
Q ss_pred CCCCCCC-CHHHHHHHHHHHHhc--CCeEE
Q 018443 158 NPYYGKT-SLEGLISHFDSVLSM--GPTII 184 (356)
Q Consensus 158 pP~y~~~-s~~~l~~y~~~va~~--~Piil 184 (356)
...-... .+..-.....++.+. .||+.
T Consensus 137 g~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 137 GMESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred CcccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 6522211 111135566666665 56654
No 195
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=89.27 E-value=5 Score=36.62 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
.+.++.+.+.|++-+++.+...+.+ +.++-.++++.+.+. ..+++++++. +.++ ++.+.+.|+|.+.+..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p--~~~~~~~~i~~~~~~--~~i~vi~~v~--t~ee----~~~a~~~G~d~i~~~~ 147 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRP--DGETLAELVKRIKEY--PGQLLMADCS--TLEE----GLAAQKLGFDFIGTTL 147 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCC--CCCCHHHHHHHHHhC--CCCeEEEeCC--CHHH----HHHHHHcCCCEEEcCC
Confidence 3567888999999666655433211 114556677766654 5778887765 3444 4678999999886532
Q ss_pred CCC-CC--CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018443 159 PYY-GK--TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 206 (356)
Q Consensus 159 P~y-~~--~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~l-s~~~l~~La~~ 206 (356)
-.+ .. ........+.+++.+. .|++. +-.+ +++.+.++.+.
T Consensus 148 ~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia-------~GGI~t~~~~~~~l~~ 194 (221)
T PRK01130 148 SGYTEETKKPEEPDFALLKELLKAVGCPVIA-------EGRINTPEQAKKALEL 194 (221)
T ss_pred ceeecCCCCCCCcCHHHHHHHHHhCCCCEEE-------ECCCCCHHHHHHHHHC
Confidence 111 10 0111224566666665 45543 3346 57888888754
No 196
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.27 E-value=3.6 Score=39.10 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
.+.|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ ++++=++ .+++.--++.-+-.|.++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~-~~~l~~H-~Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 146 YKANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVKEVRERLP-GVPLGIH-AHNDSGLAVANSLAAVEAG 220 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhCC-CCeeEEE-ecCCCCcHHHHHHHHHHcC
Confidence 367999999999999999999999999999 7899999999999888774 4665444 4677888999999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHH
Q 018443 151 MHAALHINPYYG----KTSLEGLISHF 173 (356)
Q Consensus 151 adavlv~pP~y~----~~s~~~l~~y~ 173 (356)
++.+=..---.+ ..+-+++..++
T Consensus 221 a~~id~s~~GlGeraGn~~~e~~~~~L 247 (273)
T cd07941 221 ATQVQGTINGYGERCGNANLCSIIPNL 247 (273)
T ss_pred CCEEEEeccccccccccccHHHHHHHH
Confidence 998865544332 23445555554
No 197
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=89.24 E-value=20 Score=33.87 Aligned_cols=109 Identities=11% Similarity=0.132 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cCcccc------cCCCHHHHHHHHHHHHHHhCCCcEE----EE--ecCCCCHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVG-GTTGEG------QLMSWDEHIMLIGHTVNCFGASVKV----IG--NTGSNSTREA 139 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~-GstGE~------~~Lt~eEr~~li~~~~~~~~grvpV----i~--gvg~~st~~a 139 (356)
.+..+++..+..+.+.|++.+++. |..-.. ..-....=.++++.+.+...+...+ +. +....+.++-
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~ 149 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEED 149 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHH
Confidence 466999999999999999999887 422111 1123334455665555543222211 11 1123345666
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q 018443 140 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIY 185 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilY 185 (356)
++..+.=.++||+.++.. |.| +.+.+.+|.+.+.+. .||+.=
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ-~~f---d~~~~~~~~~~~~~~gi~vPIi~G 194 (274)
T cd00537 150 IKRLKRKVDAGADFIITQ-LFF---DNDAFLRFVDRCRAAGITVPIIPG 194 (274)
T ss_pred HHHHHHHHHCCCCEEeec-ccc---cHHHHHHHHHHHHHcCCCCCEEee
Confidence 666666667899888755 566 567888888888665 476543
No 198
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=89.15 E-value=7.1 Score=40.24 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
..+.+-+.++++.+.+.|++.|.+.-|+|= +++++-.++++.+.+.++ +|+=+++ +++.--++.-+-.|.++||
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~---l~P~~v~~Lv~~lk~~~~--vpI~~H~-Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKDMAGL---LTPKRAYELVKALKKKFG--VPVEVHS-HCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCC---cCHHHHHHHHHHHHHhcC--CceEEEe-cCCCCcHHHHHHHHHHhCC
Confidence 678999999999999999999999999995 799999999999988774 7776665 4567778888888999999
Q ss_pred CEEEEc-CCCCCCC---CHHHHHHHH
Q 018443 152 HAALHI-NPYYGKT---SLEGLISHF 173 (356)
Q Consensus 152 davlv~-pP~y~~~---s~~~l~~y~ 173 (356)
|.+=.. .|+-... +-++++..+
T Consensus 223 d~vD~sv~~~g~gagN~atE~lv~~L 248 (467)
T PRK14041 223 DMFDTAISPFSMGTSQPPFESMYYAF 248 (467)
T ss_pred CEEEeeccccCCCCCChhHHHHHHHH
Confidence 998444 3443333 334444444
No 199
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=89.13 E-value=3.6 Score=41.51 Aligned_cols=175 Identities=13% Similarity=0.081 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccC---------cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGT---------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 141 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~Gs---------tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~ 141 (356)
|.-+.+.+.+.++.+.+.|+++|-+|=+ .|....-..+.-.++++.+.+.+ ++||++=++. +..+..+
T Consensus 108 g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~Pv~vKl~p-~~~~~~~ 184 (420)
T PRK08318 108 VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLPVIVKLTP-NITDIRE 184 (420)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCcEEEEcCC-CcccHHH
Confidence 5556788889999888899999987643 23333456667777777777654 5899998875 4556889
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE-Ee-CCCCCCCCC---CHHHHHHHhcCCCEEEEeecC
Q 018443 142 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII-YN-VPSRTGQDI---PPRVIHTMAQSPNLAGVKECV 216 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~Piil-Yn-~P~~tG~~l---s~~~l~~La~~pnivGiK~s~ 216 (356)
+++.+++.|+|++.+++-.+.... ++. +. ....|.+- .+ .-+.+|..+ +.+.+.++.+.-+.
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~----id~-~~-~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~------- 251 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITG----VDL-DR-MIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPET------- 251 (420)
T ss_pred HHHHHHHCCCCEEEEecccCcccc----ccc-cc-cCCCceecCCCCcccccchhhhHHHHHHHHHHHhcccc-------
Confidence 999999999999999876554311 000 00 01124330 00 112344444 34455555431100
Q ss_pred chhhHhhhhCCCeEEEecCcchhHhHHHHcCCceeeccccccc--HHHHHHHHH
Q 018443 217 GNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLV--PGMMRELMF 268 (356)
Q Consensus 217 ~d~~i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~n~~--P~~~~~l~~ 268 (356)
.+..+.. .. .|+++.| ... .+..|++++..+++.+. |..+.+|.+
T Consensus 252 ~~ipIig--~G--GI~s~~d--a~e-~i~aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 252 RGLPISG--IG--GIETWRD--AAE-FILLGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred CCCCEEe--ec--CcCCHHH--HHH-HHHhCCChheeeeeeccCCchhHHHHHH
Confidence 0000000 01 2334443 233 36799999999999887 777666543
No 200
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=89.09 E-value=5.1 Score=40.02 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=102.5
Q ss_pred CCCCcccccCCCCCCCCcchh----ccc-CCccccccCcee--EeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc
Q 018443 25 WRPPQAAIIPNYHLPMRSFEV----KNR-TSAEDIKALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG 97 (356)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~Gvi--~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~G 97 (356)
.|.-......|++||-....- +.. ....| +.|+. |-+-|-+.+.--++.+...+++--++..|||=+====
T Consensus 115 ~K~~~~lRL~D~~fP~~f~k~f~GP~fGv~G~R~--~lgv~~RPLlgtivKPklGl~~e~~a~~~yE~~~GGvD~iKDDE 192 (429)
T COG1850 115 MKALKGLRLEDLRFPKEFLKAFKGPQFGVEGVRD--LLGVKGRPLLGTIVKPKLGLSPEEYAELAYELLSGGVDFIKDDE 192 (429)
T ss_pred cccccCceeeeccCCHHHHhcCCCCCCCceeehh--hhCcCCCcccccccCcccCCCHHHHHHHHHHHHhcCcceecchh
Confidence 344555666777777554411 111 01111 22222 3344555666678999999999999999999662111
Q ss_pred CcccccCCCHHHHHHHHHHHHH----HhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHH
Q 018443 98 TTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF 173 (356)
Q Consensus 98 stGE~~~Lt~eEr~~li~~~~~----~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~ 173 (356)
.--+....-++||...+-.+++ .++.+.--.+++++. ++|.++.++.|+++|++.+|+=-=.+ . =...+|+
T Consensus 193 nl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~NITa~-~~EM~rrae~a~elG~~~~midi~~~---G-~~a~q~l 267 (429)
T COG1850 193 NLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVNITAP-CEEMMRRAELAAELGANYVMIDIVVT---G-FTALQYL 267 (429)
T ss_pred hccCcccccHHHHHHHHHHHHHHHHHhhCceEEEEeeccCC-HHHHHHHHHHHHHcCCCEEEEEEEec---c-cHHHHHH
Confidence 2223445568888766555544 344454557799987 99999999999999999999852222 1 2356777
Q ss_pred HHHHhcCCeEEEeCCCC-------CCCCCCHHHHHHHh
Q 018443 174 DSVLSMGPTIIYNVPSR-------TGQDIPPRVIHTMA 204 (356)
Q Consensus 174 ~~va~~~PiilYn~P~~-------tG~~ls~~~l~~La 204 (356)
++. +..+++|.=.+.. -+..++.-+++++.
T Consensus 268 re~-~d~gl~ihaHramh~a~tr~p~~Gis~~vlaK~~ 304 (429)
T COG1850 268 RED-EDIGLAIHAHRAMHAAFTRSPNHGISFLVLAKLL 304 (429)
T ss_pred Hhc-ccCCceEEechhhhhhhhcCCCCCccHHHHHHHH
Confidence 777 3334333322111 12335666666654
No 201
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.03 E-value=9.9 Score=39.40 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCCEEEEccCccccc-----CCCHHHHHHHHHHHHHHhCC-CcEEEEec---CCCCHHHHHHHHHHHHHc
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQGFAV 149 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~-----~Lt~eEr~~li~~~~~~~~g-rvpVi~gv---g~~st~~ai~lar~a~~~ 149 (356)
.+-++..++.|++.+.+..++++.+ .+|.+|-.+.+..+++.+.. ...|.++. +..+.+-.++.++.+.++
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 4447778889999999999999885 67888888888777776542 23444443 334677788999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q 018443 150 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTII 184 (356)
Q Consensus 150 Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~Piil 184 (356)
|+|.+.+ +=..+..+++++.+.++.+.+. .|+-+
T Consensus 156 Ga~~i~l-~DTvG~~~P~~~~~lv~~l~~~~~v~l~~ 191 (488)
T PRK09389 156 GADRICF-CDTVGILTPEKTYELFKRLSELVKGPVSI 191 (488)
T ss_pred CCCEEEE-ecCCCCcCHHHHHHHHHHHHhhcCCeEEE
Confidence 9998654 3456677889999999998776 45444
No 202
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.02 E-value=3.9 Score=38.54 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
..+++.+.+.|++.+++.+-+-++..--. -.++++.+.+.+ ++|||++=|-.+.++..++.+ +.|+|++++..
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~--d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~---~~GvdgVivg~ 227 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGY--DLELLKSFRNAL--KIPLIALGGAGSLDDIVEAIL---NLGADAAAAGS 227 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH---HCCCCEEEEcc
Confidence 56666777899999998865544332221 334445555543 689999887777888776643 46999999999
Q ss_pred CCCCC
Q 018443 159 PYYGK 163 (356)
Q Consensus 159 P~y~~ 163 (356)
.+|+.
T Consensus 228 a~~~~ 232 (258)
T PRK01033 228 LFVFK 232 (258)
T ss_pred eeeeC
Confidence 97764
No 203
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.99 E-value=3.6 Score=38.48 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE--ec------CCCCHHHHHHHHHHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NT------GSNSTREAIHATEQGF 147 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~--gv------g~~st~~ai~lar~a~ 147 (356)
..++++++++-+.|.+.|=+.-.+-+ |+.++|.++++.+.+. ...|+. |. ...++.+-|+++++.-
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~---i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L 144 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME---ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTPDDRIKLINKDL 144 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC---CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCHHHHHHHHHHHH
Confidence 67888999999999999976555444 8999999999988753 122222 11 2356788999999999
Q ss_pred HcCCCEEEEcC
Q 018443 148 AVGMHAALHIN 158 (356)
Q Consensus 148 ~~Gadavlv~p 158 (356)
++||+.||+-.
T Consensus 145 eAGA~~ViiEa 155 (237)
T TIGR03849 145 EAGADYVIIEG 155 (237)
T ss_pred HCCCcEEEEee
Confidence 99999999865
No 204
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.99 E-value=2.1 Score=41.56 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
...++++.+.+.|++.|.+-|-+.... .+..-..+.++.+.+.+ ++||++.=+-.+.+++.+..+ ..|+|+||+
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~---~~gad~Vmi 221 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQG-YSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLE---TTGCDGVMI 221 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccccc-CCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHH---hhCCCEEEE
Confidence 356778888899999999877554321 22222345566666655 488886555556666555553 469999999
Q ss_pred cCCCCCCC
Q 018443 157 INPYYGKT 164 (356)
Q Consensus 157 ~pP~y~~~ 164 (356)
.-+.+..|
T Consensus 222 gR~~l~~P 229 (319)
T TIGR00737 222 GRGALGNP 229 (319)
T ss_pred ChhhhhCC
Confidence 98877655
No 205
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=88.99 E-value=7.6 Score=42.43 Aligned_cols=88 Identities=11% Similarity=0.010 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCcc----------------cccCCCHHHHHHHHHHHHHHh----CCC
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTG----------------EGQLMSWDEHIMLIGHTVNCF----GAS 124 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~GstG----------------E~~~Lt~eEr~~li~~~~~~~----~gr 124 (356)
.++.+.++++++ ...++|.|||=+.+..| |+-- |.|.|.+++..+++.+ +.+
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCC
Confidence 355665555554 55669999998877633 3222 5677877776666654 345
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 125 VKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 125 vpVi~gvg-------~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.||-+=++ +.+.++++++++..++.|+|.+-+..+.
T Consensus 619 ~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~ 661 (765)
T PRK08255 619 KPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQ 661 (765)
T ss_pred CeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCC
Confidence 56654332 4468999999999999999999887543
No 206
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=88.98 E-value=3.6 Score=40.03 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEEccCc-----ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNG-AEGMIVGGTT-----GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 146 (356)
Q Consensus 73 ID~~~l~~~v~~li~~G-v~Gl~v~Gst-----GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a 146 (356)
-..+++..++..+.+.+ ++.+-+|=|+ |...--..|.-.++++.+.+.. ++||++=++- +..+..+.|+.+
T Consensus 106 ~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~--~~Pv~vKl~P-~~~di~~iA~~~ 182 (310)
T COG0167 106 PSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT--KVPVFVKLAP-NITDIDEIAKAA 182 (310)
T ss_pred CcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc--cCceEEEeCC-CHHHHHHHHHHH
Confidence 34677777777777777 8998876543 2222224556666666666554 4899999886 899999999999
Q ss_pred HHcCCCEEEEcCCC
Q 018443 147 FAVGMHAALHINPY 160 (356)
Q Consensus 147 ~~~Gadavlv~pP~ 160 (356)
.+.|+|++.+++=.
T Consensus 183 ~~~g~Dgl~~~NT~ 196 (310)
T COG0167 183 EEAGADGLIAINTT 196 (310)
T ss_pred HHcCCcEEEEEeec
Confidence 99999999998743
No 207
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=88.93 E-value=3.2 Score=41.38 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~ 147 (356)
.|..|.+-=++-++.+.+.|.+|+.+.| +.|| +.+|+.++++.+........|. +.|+|. ..+.+ .+.
T Consensus 189 QGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge----~~~~~~~~v~~~~~~lp~~kPryl~Gvg~--P~~i~----~~v 258 (366)
T PRK00112 189 QGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGE----PKEEMYRILEHTAPLLPEDKPRYLMGVGT--PEDLV----EGV 258 (366)
T ss_pred eCCccHHHHHHHHHHHHhCCCceeEeccccCCC----CHHHHHHHHHHHHhhCCCcCCeEecCCCC--HHHHH----HHH
Confidence 6888888888889999999999999999 6788 8899999999999988877776 557774 44444 456
Q ss_pred HcCCCEEEEcCCC
Q 018443 148 AVGMHAALHINPY 160 (356)
Q Consensus 148 ~~Gadavlv~pP~ 160 (356)
.+|+|-+=..-|.
T Consensus 259 ~~GvD~FD~~~p~ 271 (366)
T PRK00112 259 ARGVDMFDCVMPT 271 (366)
T ss_pred HcCCCEEeeCCcc
Confidence 6999987655554
No 208
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=88.90 E-value=3.8 Score=40.71 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=84.3
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
-.|..+. +++- ..++.|.+-+.+.++...+.|++.|.++-|+| .+++++-.++++.+.+.. ++|+=++ ++++
T Consensus 124 ~~g~~v~-~~~e-d~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~--~v~l~~H-~HNd 195 (365)
T TIGR02660 124 DRGLFVS-VGGE-DASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALRQAV--DLPLEMH-AHND 195 (365)
T ss_pred hCCCEEE-Eeec-CCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHHHhc--CCeEEEE-ecCC
Confidence 3565444 3433 34678999999999999999999999999999 789999999999988766 3665444 4678
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHH
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHF 173 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~ 173 (356)
.--++.-+-.|.++||+.+-..---.+ ..+-++++.++
T Consensus 196 ~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 196 LGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred CChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence 889999999999999998866544332 34556666555
No 209
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=88.90 E-value=2.9 Score=40.67 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----HHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gada 153 (356)
+.++++.++++|++++.+.-+.+....||.++..+.+ +.+++.++.+ +++.++.++. . .+.....+.|+|.
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~cG~~-~---~~l~~~~~~g~d~ 256 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHICGDL-T---SILEEMADCGFDG 256 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEECCCc-h---HHHHHHHhcCCCe
Confidence 4556666888999999999888888889999998776 4555655555 5566655443 2 3344556678888
Q ss_pred EEE
Q 018443 154 ALH 156 (356)
Q Consensus 154 vlv 156 (356)
+.+
T Consensus 257 ~~~ 259 (339)
T PRK06252 257 ISI 259 (339)
T ss_pred ecc
Confidence 653
No 210
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=88.89 E-value=16 Score=36.55 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHH-------HCCCCEEEEccCc-ccc--c-------------CCCHHHHHHHHHHHHHHhCC----C
Q 018443 72 RFDLEAYDDLVNMQI-------VNGAEGMIVGGTT-GEG--Q-------------LMSWDEHIMLIGHTVNCFGA----S 124 (356)
Q Consensus 72 ~ID~~~l~~~v~~li-------~~Gv~Gl~v~Gst-GE~--~-------------~Lt~eEr~~li~~~~~~~~g----r 124 (356)
.+..+.++.+++... ++|.|||=+.+.. |-. + -=|.|.|.+++..+++.+.. +
T Consensus 139 ~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~ 218 (382)
T cd02931 139 ELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGED 218 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCC
Confidence 466666666666554 7899999887644 431 0 11568888887777776543 3
Q ss_pred cEEEEecC---------------------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC-----CCC---HHHH-HHHHH
Q 018443 125 VKVIGNTG---------------------SNSTREAIHATEQGFAVGMHAALHINPYYG-----KTS---LEGL-ISHFD 174 (356)
Q Consensus 125 vpVi~gvg---------------------~~st~~ai~lar~a~~~Gadavlv~pP~y~-----~~s---~~~l-~~y~~ 174 (356)
.+|-+=++ +.+.++++++++..++.|+|.+-+....+. .+. .++. ..+-+
T Consensus 219 f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T cd02931 219 FPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCK 298 (382)
T ss_pred ceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHH
Confidence 35443222 346799999999999999999988754321 111 1111 22223
Q ss_pred HHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 175 SVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 175 ~va~~--~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
.+.+. .||+. +|.--+++..+++.+
T Consensus 299 ~ik~~~~~pvi~------~G~i~~~~~~~~~l~ 325 (382)
T cd02931 299 ALKEVVDVPVIM------AGRMEDPELASEAIN 325 (382)
T ss_pred HHHHHCCCCEEE------eCCCCCHHHHHHHHH
Confidence 34443 47664 344457887777664
No 211
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=88.85 E-value=1 Score=44.24 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccc------------cCCC-HHHHH---HHHHHHHHHhCCCcEEEEecCCCCHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEG------------QLMS-WDEHI---MLIGHTVNCFGASVKVIGNTGSNSTR 137 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~------------~~Lt-~eEr~---~li~~~~~~~~grvpVi~gvg~~st~ 137 (356)
+.+.+..+++.+.+.|++||.+.-|+-.. --|| ...+- +.+..+.+..++++|+|+.=|=.+.+
T Consensus 222 ~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~ 301 (335)
T TIGR01036 222 TESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQ 301 (335)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHH
Confidence 34578888898999999999876665321 1222 22222 34445555566788887543444566
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
+++++.. +|||+|.+..-.+.
T Consensus 302 da~e~l~----aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 302 DALEKIR----AGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHH----cCCcHHHhhHHHHH
Confidence 6777654 78999988766543
No 212
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=88.82 E-value=3.8 Score=38.79 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=65.4
Q ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC
Q 018443 127 VIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI 195 (356)
Q Consensus 127 Vi~gvg~~st~~ai~lar~a~~~Gadavlv~p---------P~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~l 195 (356)
++.++-.. -.|+.++++|+|++++.. |.....|-+++..|.+.|++. .|+++=|.| ..++.-
T Consensus 15 ~~~~ayD~------~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~-fg~y~~ 87 (254)
T cd06557 15 VMLTAYDY------PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMP-FGSYQT 87 (254)
T ss_pred EEEeCCCH------HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCC-CCcccC
Confidence 45555543 346777888999998653 333456889999999999997 598888887 345555
Q ss_pred CHHHH----HHHhcCCCEEEEeecCchh---hHhhhhCCCe
Q 018443 196 PPRVI----HTMAQSPNLAGVKECVGND---RVEHYTGNGI 229 (356)
Q Consensus 196 s~~~l----~~La~~pnivGiK~s~~d~---~i~~~~~~~~ 229 (356)
+++.. .++.+--++.|||.+.+.+ +++++...++
T Consensus 88 ~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agi 128 (254)
T cd06557 88 SPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGI 128 (254)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCC
Confidence 55543 4444558899999998852 4554444333
No 213
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=88.74 E-value=3.6 Score=40.32 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCCEEEEcCCC---------CCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH----HHHHhc
Q 018443 141 HATEQGFAVGMHAALHINPY---------YGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV----IHTMAQ 205 (356)
Q Consensus 141 ~lar~a~~~Gadavlv~pP~---------y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~----l~~La~ 205 (356)
-.|+.+.++|+|.+++-..- -.+.|-++++.|.++|++. .|+++=|.|.. .+..+++. ..+|.+
T Consensus 46 ~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg-SY~~s~e~av~nA~rl~~ 124 (332)
T PLN02424 46 PSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG-SYESSTDQAVESAVRMLK 124 (332)
T ss_pred HHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHH
Confidence 35677889999999987652 1246789999999999997 68999999953 25567765 455555
Q ss_pred CCCEEEEeecCc
Q 018443 206 SPNLAGVKECVG 217 (356)
Q Consensus 206 ~pnivGiK~s~~ 217 (356)
--++.|||.+.+
T Consensus 125 eaGa~aVKlEGg 136 (332)
T PLN02424 125 EGGMDAVKLEGG 136 (332)
T ss_pred HhCCcEEEECCC
Confidence 568999999988
No 214
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=88.74 E-value=17 Score=38.79 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccC----ccccc------CCCHHHHHHHHHHHHHHh-------CCCcEEEEecCC-
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQ------LMSWDEHIMLIGHTVNCF-------GASVKVIGNTGS- 133 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~Gs----tGE~~------~Lt~eEr~~li~~~~~~~-------~grvpVi~gvg~- 133 (356)
.-|..+++..+..+.+.|+++|+++.. +|+.. .++..+-.++++..-+.. .++..+.+|+..
T Consensus 392 d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~~ 471 (612)
T PRK08645 392 DRNLIGLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAFN 471 (612)
T ss_pred CcCHHHHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEeC
Confidence 467888999999889999999976543 34443 134444444444321110 012234445433
Q ss_pred ---CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCC------------CCCCCCCH
Q 018443 134 ---NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPS------------RTGQDIPP 197 (356)
Q Consensus 134 ---~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~------------~tG~~ls~ 197 (356)
.+.+.-++..+.=.++|||.++.. |+| +.+.+.+|.+.+... .||+..=.|- ..|+.+|.
T Consensus 472 P~~~~~~~d~~~L~~Ki~aGAdf~iTQ-~~f---d~~~~~~~~~~~~~~~vpIi~GImPi~s~k~~~~~~~~~~Gv~vP~ 547 (612)
T PRK08645 472 PNVRNLDKEVKRLEKKIEAGADYFITQ-PVY---DEELIEELLEATKHLGVPIFIGIMPLVSYRNAEFLHNEVPGITLPE 547 (612)
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEEec-ccC---CHHHHHHHHHHHhcCCCCEEEEeeecCCHHHHHHHHhCCCCCCCCH
Confidence 346666666666678999999866 566 456666666665433 5876655542 12666777
Q ss_pred HHHHHHhcC
Q 018443 198 RVIHTMAQS 206 (356)
Q Consensus 198 ~~l~~La~~ 206 (356)
+++++|.+.
T Consensus 548 ~l~~~l~~~ 556 (612)
T PRK08645 548 EIRERMRAV 556 (612)
T ss_pred HHHHHHHhc
Confidence 777777643
No 215
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=88.73 E-value=20 Score=34.99 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=89.6
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
+++..+.+.|-=|++.. + ++.+|..+.++.+. ++..+-+.++. ..+..++++...+.|+|.+.+-.-
T Consensus 49 ~ma~ava~~GglGvi~~----~---~~~~~~~~~i~~vk----~~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~ 115 (325)
T cd00381 49 EMAIAMARLGGIGVIHR----N---MSIEEQAEEVRKVK----GRLLVGAAVGT--REDDKERAEALVEAGVDVIVIDSA 115 (325)
T ss_pred HHHHHHHHCCCEEEEeC----C---CCHHHHHHHHHHhc----cCceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECC
Confidence 45555667786666531 2 35677666555443 44444444443 467788999999999999887542
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---CeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeecC--------------chh---
Q 018443 160 YYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV--------------GND--- 219 (356)
Q Consensus 160 ~y~~~s~~~l~~y~~~va~~~---PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s~--------------~d~--- 219 (356)
. . +.+...+..+.+.+.. ||+. |...+++...++.+. ++-+||... +.+
T Consensus 116 ~-G--~~~~~~~~i~~ik~~~p~v~Vi~-------G~v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 116 H-G--HSVYVIEMIKFIKKKYPNVDVIA-------GNVVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred C-C--CcHHHHHHHHHHHHHCCCceEEE-------CCCCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 2 1 1244555666665543 5554 566888888888752 222333210 001
Q ss_pred ---hHhhhhC-CCeEEEe--cCc--chhHhHHHHcCCceeecccccccHHHH
Q 018443 220 ---RVEHYTG-NGIVVWS--GND--DQCHDARWNHGATGVISVTSNLVPGMM 263 (356)
Q Consensus 220 ---~i~~~~~-~~~~v~~--G~d--~~~l~~~l~~Ga~G~is~~~n~~P~~~ 263 (356)
.+.+... .++.|+. |-. ..+. .++.+|++|++.|+.-...+..
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~-kAla~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIV-KALAAGADAVMLGSLLAGTDES 235 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHH-HHHHcCCCEEEecchhcccccC
Confidence 1112222 2456665 222 2233 4588999999988765554443
No 216
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=88.59 E-value=20 Score=32.97 Aligned_cols=101 Identities=17% Similarity=0.035 Sum_probs=70.4
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCCCHH
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTR 137 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~st~ 137 (356)
+-.+.+.=| +-|.-..+.=...++..++.|++-+=+.-..|-..+=.+++-.+-+..+++.+.+ -++||.-++..+-+
T Consensus 54 v~v~tVigF-P~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ 132 (211)
T TIGR00126 54 VRICTVVGF-PLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDE 132 (211)
T ss_pred CeEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHH
Confidence 334444445 4577777887888899999999988766666655444455555556666665543 35677777777778
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCC
Q 018443 138 EAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~ 160 (356)
+-+..++.+.++|||.+=...=|
T Consensus 133 ei~~a~~ia~eaGADfvKTsTGf 155 (211)
T TIGR00126 133 EIRKACEICIDAGADFVKTSTGF 155 (211)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCC
Confidence 88888899999999987765433
No 217
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=88.58 E-value=3 Score=40.69 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
.....+++.+.+.|++.|.+-|-|.+...-- .-..++++.+.+.+ ++|||+.=+-.+.+++.+..+ ..|+|+||
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G-~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~---~~gadgVm 222 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNG-EAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLD---YTGADALM 222 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCC-CcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHh---ccCCCEEE
Confidence 3466777778899999999988775432211 11234566666654 589886544446666655543 37999999
Q ss_pred EcCCCCCCC
Q 018443 156 HINPYYGKT 164 (356)
Q Consensus 156 v~pP~y~~~ 164 (356)
+.-..+..|
T Consensus 223 iGR~~l~nP 231 (321)
T PRK10415 223 IGRAAQGRP 231 (321)
T ss_pred EChHhhcCC
Confidence 997766554
No 218
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.48 E-value=21 Score=33.23 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=81.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEc------cCcccccC----------CCHHHHHHHHHHHHHHhCCCcEEEE
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVG------GTTGEGQL----------MSWDEHIMLIGHTVNCFGASVKVIG 129 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~------GstGE~~~----------Lt~eEr~~li~~~~~~~~grvpVi~ 129 (356)
||---|--|.+.+.+.++.+.+.|+|.+=+. =.-|.+-. .|.+.-.++++.+.+.. ++|++.
T Consensus 4 ~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~l 81 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVL 81 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEE
Confidence 3444688899999999999999999999876 33333221 11233444555444432 678654
Q ss_pred ecCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 130 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 130 gvg~~st~~--ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~-PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
=+--+..-. .-++.+.++++|+|++.+.. - ..|++..+.+.+.+. + ++++.+ |. -+.+.++.+++
T Consensus 82 m~y~n~~~~~G~~~fi~~~~~aG~~giiipD--l---~~ee~~~~~~~~~~~g~~~i~~i~-P~-----T~~~~i~~i~~ 150 (242)
T cd04724 82 MGYYNPILQYGLERFLRDAKEAGVDGLIIPD--L---PPEEAEEFREAAKEYGLDLIFLVA-PT-----TPDERIKKIAE 150 (242)
T ss_pred EEecCHHHHhCHHHHHHHHHHCCCcEEEECC--C---CHHHHHHHHHHHHHcCCcEEEEeC-CC-----CCHHHHHHHHh
Confidence 233232222 24578888999999998742 1 236777777777776 4 444454 42 35677888876
Q ss_pred -CCCEE
Q 018443 206 -SPNLA 210 (356)
Q Consensus 206 -~pniv 210 (356)
...++
T Consensus 151 ~~~~~v 156 (242)
T cd04724 151 LASGFI 156 (242)
T ss_pred hCCCCE
Confidence 44443
No 219
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.44 E-value=9.5 Score=35.91 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=55.5
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe---cCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN---TGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g---vg~~st~~ai~lar~a~~~Gadavlv 156 (356)
+.++...+.|++.+-+.-+..|. ++-++.++.+.+. ...|.++ ++..+.+..+++++.+.++|+|.+.+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~-----~~~~~~i~~ak~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA-----DVSEQHIGAARKL---GMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH-----HHHHHHHHHHHHC---CCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34566677788887776665553 2233333333321 2233332 35556777788888888888887654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc
Q 018443 157 INPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 157 ~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+=.++..+++++.+.++.+.+.
T Consensus 161 -~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 161 -TDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred -cCCCCCcCHHHHHHHHHHHHHh
Confidence 3456666777777777777766
No 220
>PLN02489 homocysteine S-methyltransferase
Probab=88.43 E-value=22 Score=34.91 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=74.0
Q ss_pred eeEeeecccCC---CC---------CCCHHHHHHH----HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC
Q 018443 59 LITAIKTPYLP---DG---------RFDLEAYDDL----VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG 122 (356)
Q Consensus 59 vi~al~TPf~~---dg---------~ID~~~l~~~----v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~ 122 (356)
++..-+.|+.. +| .++.+.+.+. ++.+++.|||.|++ -|. -+.+|-+.+++.+.+ ..
T Consensus 134 ~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~-ET~-----~~l~E~~a~~~~~~~-~~ 206 (335)
T PLN02489 134 LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAF-ETI-----PNKLEAQAYVELLEE-EN 206 (335)
T ss_pred EEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEE-ecc-----CChHHHHHHHHHHHH-cC
Confidence 56667777653 11 2666665554 77777899999975 222 256777777765554 34
Q ss_pred CCcEEEEecCC---------CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018443 123 ASVKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVP 188 (356)
Q Consensus 123 grvpVi~gvg~---------~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P 188 (356)
.++|+++.... .+..++++.+.. ..+++++.+=. .+.+.+..-.+.+... .|+++|-|.
T Consensus 207 ~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 276 (335)
T PLN02489 207 IKIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVVAVGINC-----TPPRFIHGLILSIRKVTSKPIVVYPNS 276 (335)
T ss_pred CCCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecC-----CCHHHHHHHHHHHHhhcCCcEEEECCC
Confidence 46798877632 345666666542 23677776643 2456777777777665 699999874
No 221
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=88.36 E-value=4.1 Score=39.51 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=69.9
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
++.+.+.+.|+|+|++-|....++.-.. --..++..+++.+ ++|||+.=|-.+-++ +..+..+|||+|++-..
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~-~~~~ll~~v~~~~--~iPviaaGGI~~~~~----~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHIGEL-TTMALVPQVVDAV--SIPVIAAGGIADGRG----MAAAFALGAEAVQMGTR 192 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCCCCC-cHHHHHHHHHHHh--CCCEEEECCCCCHHH----HHHHHHcCCCEeecchH
Confidence 3556777899999998554333321110 1255666666655 589876433333333 34445589999999987
Q ss_pred CCCCCCHHHHHHHHHHHH-hc--CCeEEEeCC-CCCCCCCCHHHHHHHhc
Q 018443 160 YYGKTSLEGLISHFDSVL-SM--GPTIIYNVP-SRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 160 ~y~~~s~~~l~~y~~~va-~~--~PiilYn~P-~~tG~~ls~~~l~~La~ 205 (356)
+... .+...-..|++.. +. ..+++...+ ++.+..+..+..+++.+
T Consensus 193 f~~t-~Es~~~~~~k~~l~~~~~~dt~~t~~~~G~~~R~l~n~~~~~~~~ 241 (307)
T TIGR03151 193 FLCA-KECNVHPNYKEKVLKAKDRDTVVTGASTGHPVRVLKNKLTRKYQE 241 (307)
T ss_pred Hhcc-cccCCCHHHHHHHHhCCCCCEEEEecCCCCceeeecCHHHHHHHh
Confidence 6543 2334555666654 33 356666643 34455677788887764
No 222
>PRK08185 hypothetical protein; Provisional
Probab=88.36 E-value=6.9 Score=37.61 Aligned_cols=113 Identities=20% Similarity=0.299 Sum_probs=69.5
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecCCC------CHHH----HHHHHHHHH
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSN------STRE----AIHATEQGF 147 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg~~------st~~----ai~lar~a~ 147 (356)
++..++.|.+.+.+=|| .|+.+|-.++.+.+++.+.. .++| +..+|.. ...+ ..+.++...
T Consensus 84 i~~ai~~Gf~SVM~D~S-----~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~ 158 (283)
T PRK08185 84 VMRAIRCGFTSVMIDGS-----LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFV 158 (283)
T ss_pred HHHHHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHH
Confidence 55667889999999777 47999999999999986643 4554 2223221 0011 234444444
Q ss_pred H-cCCCEEEE-----cCCCCC--CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 148 A-VGMHAALH-----INPYYG--KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 148 ~-~Gadavlv-----~pP~y~--~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+ .|+|.+.+ ...|-. ++.-+ ++..++|.+. .|+++.= |..++.+.+++..+.
T Consensus 159 ~~TgvD~LAvaiGt~HG~y~~~~kp~L~--~e~l~~I~~~~~iPLVlHG-----gsg~~~e~~~~ai~~ 220 (283)
T PRK08185 159 SRTGVDTLAVAIGTAHGIYPKDKKPELQ--MDLLKEINERVDIPLVLHG-----GSANPDAEIAESVQL 220 (283)
T ss_pred HhhCCCEEEeccCcccCCcCCCCCCCcC--HHHHHHHHHhhCCCEEEEC-----CCCCCHHHHHHHHHC
Confidence 4 48998887 433333 23222 5566666655 5887763 556778888777654
No 223
>PRK00915 2-isopropylmalate synthase; Validated
Probab=88.35 E-value=17 Score=37.84 Aligned_cols=103 Identities=13% Similarity=-0.028 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccccc-----CCCHHHHHHHHHHHHHHhCC-CcEEEEec---CCCCHHHHHHHHHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQG 146 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~-----~Lt~eEr~~li~~~~~~~~g-rvpVi~gv---g~~st~~ai~lar~a 146 (356)
+.+++.++.+.+.|++.+.+..++++.+ ..|.+|-.+.+..+++.+.. ...|..+. +..+.+..++.++.+
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 3344455555556666666666666554 45555555555555444321 22344433 223455566666666
Q ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 147 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 147 ~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
.++|+|.+.+. =..+..+++++.+.++.+.+.
T Consensus 159 ~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 159 IDAGATTINIP-DTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred HHcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHh
Confidence 66666654432 234444556666666666544
No 224
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.31 E-value=2.5 Score=39.45 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
....+.+.+.+.|+++|.+-+..+-. ..--.+.++.+.+.++ ++|||+.=+=.+.+++.++.+ .|||+||+
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~----~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~----~GAd~Vmv 219 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGK----PYADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLK----AGADFVSV 219 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCC----chhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHH----hCCCeEEE
Confidence 45577778889999999884322110 0012455666666553 488886555557788888775 39999999
Q ss_pred cCCCC
Q 018443 157 INPYY 161 (356)
Q Consensus 157 ~pP~y 161 (356)
.-...
T Consensus 220 gR~~l 224 (231)
T TIGR00736 220 ARAIL 224 (231)
T ss_pred cHhhc
Confidence 86543
No 225
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=88.26 E-value=2 Score=40.15 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=56.6
Q ss_pred HHHHHHHHCCCCEEEEccC-cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 80 DLVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~Gs-tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
-+.++|.+.|+..+..+|+ -|-+.-+...+-. +..++.. ++|||+-.|=.+..+ +.+|.++|+|+|++-.
T Consensus 135 v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l---~~i~~~~--~vPvIvDAGiG~pSd----aa~AMElG~daVLvNT 205 (247)
T PF05690_consen 135 VLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL---RIIIERA--DVPVIVDAGIGTPSD----AAQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH---HHHHHHG--SSSBEEES---SHHH----HHHHHHTT-SEEEESH
T ss_pred HHHHHHHHCCCCEEEecccccccCcCCCCHHHH---HHHHHhc--CCcEEEeCCCCCHHH----HHHHHHcCCceeehhh
Confidence 3567788999999999994 5666666665544 4445555 789998555444554 4568899999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 018443 159 PYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 159 P~y~~~s~~~l~~y~~~va~ 178 (356)
-.....++-.+-+-|+.-.+
T Consensus 206 AiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 206 AIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHTSSSHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHH
Confidence 55555566666666655433
No 226
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.21 E-value=22 Score=33.31 Aligned_cols=137 Identities=7% Similarity=0.022 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHCCCCEEEE-ccCcccccC--CCHHHHHHHHHHHHHHhCCCcEEEEe------cCCCC-------HHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIV-GGTTGEGQL--MSWDEHIMLIGHTVNCFGASVKVIGN------TGSNS-------TREA 139 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v-~GstGE~~~--Lt~eEr~~li~~~~~~~~grvpVi~g------vg~~s-------t~~a 139 (356)
..+.+.++...+.|.+++=+ .+...++.. .|.++..++.+.+.+. +.+.+.+. ..+.+ .+..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~ 87 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG--PSICLSVHAPYLINLASPDKEKREKSIERL 87 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc--CCCcEEEEcCceeccCCCCHHHHHHHHHHH
Confidence 66788889999999999833 333333332 3666666666655554 22233322 22222 3345
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCC-H---HHHHHHHHHHHhc-----CCeEEEeCCCCC-CCCCCHHHHHHHhc----
Q 018443 140 IHATEQGFAVGMHAALHINPYYGKTS-L---EGLISHFDSVLSM-----GPTIIYNVPSRT-GQDIPPRVIHTMAQ---- 205 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~~s-~---~~l~~y~~~va~~-----~PiilYn~P~~t-G~~ls~~~l~~La~---- 205 (356)
.+.++.|+++|++.+.+.+..+...+ + +.+.+-++.+++. +.+.+=|.+... -..-+++.+.++.+
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~ 167 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKE 167 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 66778889999998877665543222 2 4455667777653 356666655432 12345666666663
Q ss_pred CCCEEEEee
Q 018443 206 SPNLAGVKE 214 (356)
Q Consensus 206 ~pnivGiK~ 214 (356)
.|++.-.=|
T Consensus 168 ~~~~g~~lD 176 (279)
T cd00019 168 KPRVGVCID 176 (279)
T ss_pred CCCeEEEEE
Confidence 456543333
No 227
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.18 E-value=8.9 Score=39.31 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
..|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+.++ +|+-+++ +++.--++.-+-.|.++||
T Consensus 150 ~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~lv~alk~~~~--~pi~~H~-Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 150 VHTIDYFVKLAKEMQEMGADSICIKDMAG---ILTPYVAYELVKRIKEAVT--VPLEVHT-HATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC--CeEEEEe-cCCCCcHHHHHHHHHHcCC
Confidence 58999999999999999999999999999 5789999999999888773 7876665 5567778888889999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHH
Q 018443 152 HAALHI-NPYYGK---TSLEGLISHF 173 (356)
Q Consensus 152 davlv~-pP~y~~---~s~~~l~~y~ 173 (356)
|.+=.. .|+-.. ++-++++..+
T Consensus 224 d~vD~sv~glg~gaGN~~tE~lv~~L 249 (448)
T PRK12331 224 DIIDTAISPFAGGTSQPATESMVAAL 249 (448)
T ss_pred CEEEeeccccCCCcCCHhHHHHHHHH
Confidence 998444 444333 3335555444
No 228
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.06 E-value=5.6 Score=36.41 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
....+.++.+.+.|++++.+.+. + +. ++++.+.+ ..++++..+.. . +.++.+.+.|+|.+.
T Consensus 67 ~~~~~~~~~~~~~g~d~v~l~~~--~----~~----~~~~~~~~---~~i~~i~~v~~--~----~~~~~~~~~gad~i~ 127 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFSFG--P----PA----EVVERLKA---AGIKVIPTVTS--V----EEARKAEAAGADALV 127 (236)
T ss_pred cCHHHHHHHHHhCCCCEEEEcCC--C----CH----HHHHHHHH---cCCEEEEeCCC--H----HHHHHHHHcCCCEEE
Confidence 45667788888999999987654 2 22 23333332 25778776642 2 556677789999998
Q ss_pred EcCCCCC---CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHhc
Q 018443 156 HINPYYG---KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMAQ 205 (356)
Q Consensus 156 v~pP~y~---~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls-~~~l~~La~ 205 (356)
+.++.-. ........++++++.+. .|+++= -.++ ++.+.++.+
T Consensus 128 ~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~-------GGI~~~~~v~~~l~ 176 (236)
T cd04730 128 AQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAA-------GGIADGRGIAAALA 176 (236)
T ss_pred EeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEE-------CCCCCHHHHHHHHH
Confidence 8664211 11111345667777664 576652 2344 477777554
No 229
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.01 E-value=9.6 Score=38.98 Aligned_cols=143 Identities=11% Similarity=0.115 Sum_probs=79.1
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc-
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI- 157 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~- 157 (356)
.+.++.++++|++.|.+-.+.|.. +--.+.++.+.+.. .++||++|... + .+-++++.++|||++-+.
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~-----~~~~~~i~~i~~~~-~~~~vi~G~v~-t----~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHS-----IYVIDSIKEIKKTY-PDLDIIAGNVA-T----AEQAKALIDAGADGLRVGI 294 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcH-----hHHHHHHHHHHHhC-CCCCEEEEeCC-C----HHHHHHHHHhCCCEEEECC
Confidence 345557889999999998877632 23444555555543 36899997654 2 345566777999999765
Q ss_pred CCCCCCC---------CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCEEEEeecCchh---hH
Q 018443 158 NPYYGKT---------SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---RV 221 (356)
Q Consensus 158 pP~y~~~---------s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~--~pnivGiK~s~~d~---~i 221 (356)
-|-+... .+-..+....+.++. .|||. --|+.-+-+..+.|+- .--.+|=-.+..++ .+
T Consensus 295 g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia-----dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~ 369 (450)
T TIGR01302 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA-----DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEY 369 (450)
T ss_pred CCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCce
Confidence 3542222 233344444444443 46443 2366666677777773 22222322222221 11
Q ss_pred hhhhCCCeEEEecCcc
Q 018443 222 EHYTGNGIVVWSGNDD 237 (356)
Q Consensus 222 ~~~~~~~~~v~~G~d~ 237 (356)
..+.+..+..|-|-..
T Consensus 370 ~~~~g~~~k~yrgm~s 385 (450)
T TIGR01302 370 EIINGRRYKQYRGMGS 385 (450)
T ss_pred EEECCEEEEEEeccch
Confidence 1122445677777644
No 230
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=87.96 E-value=17 Score=35.53 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH----HHHHHHhc----CC-e-EEEeCCCCCCCCCCHHHHHHHhc
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLIS----HFDSVLSM----GP-T-IIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~----y~~~va~~----~P-i-ilYn~P~~tG~~ls~~~l~~La~ 205 (356)
++..+++++...++|||++++.-|...-.|++...+ |.+.|.+. .| + ++|. ...+ ...+..+.+
T Consensus 185 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~-cg~~-----~~~~~~~~~ 258 (346)
T PRK00115 185 ADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILF-GKGA-----GELLEAMAE 258 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE-cCCc-----HHHHHHHHh
Confidence 444567778778899999998888555566666554 44666654 22 2 3443 2221 234666776
Q ss_pred CC-CEEEEeecCch-hhHhhhhCCCeEEEecCc
Q 018443 206 SP-NLAGVKECVGN-DRVEHYTGNGIVVWSGND 236 (356)
Q Consensus 206 ~p-nivGiK~s~~d-~~i~~~~~~~~~v~~G~d 236 (356)
.+ +++++=.. .| ...++..+++..+..+-|
T Consensus 259 ~~~~~is~d~~-~dl~~~k~~~g~~~~i~Gni~ 290 (346)
T PRK00115 259 TGADVVGLDWT-VDLAEARRRVGDKKALQGNLD 290 (346)
T ss_pred cCCCEEeeCCC-CCHHHHHHHcCCCeEEEeCCC
Confidence 43 56555332 23 234444455555555444
No 231
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=87.96 E-value=5.1 Score=37.87 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=55.4
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC---
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS--- 135 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s--- 135 (356)
.+...=-||-....=-.++++.-.+.+-+.|++.+-+-|+ +|-.+.++.. +...+||++++|-..
T Consensus 77 ~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG---------~~~~~~i~~L---~~~gIPV~gHiGLtPQ~v 144 (268)
T COG0413 77 AFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG---------EEMAETIKRL---TERGIPVMGHIGLTPQSV 144 (268)
T ss_pred eeEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC---------HHHHHHHHHH---HHcCCceEEEecCChhhh
Confidence 4555667897655445566666666666699999998776 4445555444 456799999998542
Q ss_pred ---------------HHHHHHHHHHHHHcCCCEEEE
Q 018443 136 ---------------TREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 136 ---------------t~~ai~lar~a~~~Gadavlv 156 (356)
.++.++-++..+++||-++++
T Consensus 145 ~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivl 180 (268)
T COG0413 145 NWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVL 180 (268)
T ss_pred hccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEE
Confidence 233444555555666655554
No 232
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=87.90 E-value=3.2 Score=41.08 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHH-H-----------------HHHHHHHHHHhCCCcEEEEecCCCCHHHHH
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-H-----------------IMLIGHTVNCFGASVKVIGNTGSNSTREAI 140 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eE-r-----------------~~li~~~~~~~~grvpVi~gvg~~st~~ai 140 (356)
.+.++.+.+.|+++|.+.|..|=.+. ..+. | ...+..+.+.. .++|||+.=|=.+..++.
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~-~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWA-AIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIA 277 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCcc-chhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHH
Confidence 46667788899999999886541100 0000 0 11222222322 468988644444454444
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018443 141 HATEQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 141 ~lar~a~~~Gadavlv~pP~y~~---~s~~~l~~y~~~va~~ 179 (356)
+ +..+|||++.+..|++.. ...+++.++++.+.+.
T Consensus 278 k----~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~e 315 (352)
T PRK05437 278 K----ALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEE 315 (352)
T ss_pred H----HHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3 344799999999997754 2467788888888765
No 233
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=87.89 E-value=3.1 Score=40.63 Aligned_cols=98 Identities=15% Similarity=-0.035 Sum_probs=65.2
Q ss_pred HHHHCCCCEEEEcc--CcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe----------------cCCCCHHHHHHHHHH
Q 018443 84 MQIVNGAEGMIVGG--TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN----------------TGSNSTREAIHATEQ 145 (356)
Q Consensus 84 ~li~~Gv~Gl~v~G--stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g----------------vg~~st~~ai~lar~ 145 (356)
.+.+.|+.|+-+.. ++|....++.++-.++++.+.+. ..||+++ +.+.|+.+++++++.
T Consensus 89 ~l~~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~---g~~v~~H~Er~~~la~~~g~~l~i~Hiss~~~le~i~~ 165 (337)
T cd01302 89 KLFDAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASR---GGPVMVHAERAAQLAEEAGANVHIAHVSSGEALELIKF 165 (337)
T ss_pred HHHHcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhc---CCeEEEeHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHH
Confidence 34578999986654 34443367888888888776642 2344433 334567899999999
Q ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCC
Q 018443 146 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRT 191 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~t 191 (356)
|++.|.+...=+.|+|.-.+++.+. ...+.+-.|-|-++
T Consensus 166 ak~~g~~vt~ev~ph~L~l~~~~~~-------~~~~~~k~~Pplr~ 204 (337)
T cd01302 166 AKNKGVKVTCEVCPHHLFLDESMLR-------LNGAWGKVNPPLRS 204 (337)
T ss_pred HHHCCCcEEEEcChhhheeCHHHhh-------CCCceEEEeCCCCC
Confidence 9988988777788888777776641 22455666666543
No 234
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=87.88 E-value=2.4 Score=41.63 Aligned_cols=97 Identities=13% Similarity=0.212 Sum_probs=59.4
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHH--------------HHHHHHHHHHh--CCCcEEEEecCCCCHHHHHHH
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------------IMLIGHTVNCF--GASVKVIGNTGSNSTREAIHA 142 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr--------------~~li~~~~~~~--~grvpVi~gvg~~st~~ai~l 142 (356)
.+.++.+.+.|+++|.+.|..|-.+.--...| ....+.+.+.. ..++|||+.=|=.+..++.+
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~k- 271 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAK- 271 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHH-
Confidence 56777888999999999886553211100000 11112222222 34688876544444444443
Q ss_pred HHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018443 143 TEQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 179 (356)
Q Consensus 143 ar~a~~~Gadavlv~pP~y~~---~s~~~l~~y~~~va~~ 179 (356)
+..+|||+|++..|++.. .+++.+..|++.+.+.
T Consensus 272 ---aLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~e 308 (333)
T TIGR02151 272 ---AIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEE 308 (333)
T ss_pred ---HHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334799999999997632 5778889999888776
No 235
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=87.87 E-value=4.5 Score=38.49 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=36.8
Q ss_pred ccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 96 GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 96 ~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
.|.||.-...+.. -.++++.+.+.+ ++||.+|.|=.+.+++ ++..+. ||||.+-.=
T Consensus 180 ~GvTG~~~~~~~~-~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~----~~v~~~-ADGVIVGSA 235 (265)
T COG0159 180 MGVTGARNPVSAD-VKELVKRVRKYT--DVPVLVGFGISSPEQA----AQVAEA-ADGVIVGSA 235 (265)
T ss_pred ccccCCCcccchh-HHHHHHHHHHhc--CCCeEEecCcCCHHHH----HHHHHh-CCeEEEcHH
Confidence 5777776665555 677777777766 6799998886444333 333444 788888653
No 236
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=87.86 E-value=2.5 Score=40.47 Aligned_cols=86 Identities=12% Similarity=0.175 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCcEEE-EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCC
Q 018443 112 MLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR 190 (356)
Q Consensus 112 ~li~~~~~~~~grvpVi-~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~ 190 (356)
++++.+.+. .++||+ +..|+-.|.+- +..+.++|+|+|++..=.+...+++...+.|.+.... ||.|
T Consensus 187 elLkei~~~--~~iPVV~fAiGGI~TPed---Aa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~-- 254 (287)
T TIGR00343 187 ELLLEVLKL--GKLPVVNFAAGGVATPAD---AALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH-----YDNP-- 254 (287)
T ss_pred HHHHHHHHh--CCCCEEEeccCCCCCHHH---HHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH-----cCCH--
Confidence 444555543 478998 56666634333 3344568999999998777666777777666665444 7655
Q ss_pred CCCCCCHHHHHHHhc-C-CCEEEEeecC
Q 018443 191 TGQDIPPRVIHTMAQ-S-PNLAGVKECV 216 (356)
Q Consensus 191 tG~~ls~~~l~~La~-~-pnivGiK~s~ 216 (356)
+.+.+.++ + .-.+|+-.+.
T Consensus 255 -------~~~~e~s~~~~~~m~g~~~~~ 275 (287)
T TIGR00343 255 -------EKLAEVSKDLGEAMKGISISS 275 (287)
T ss_pred -------HHHHHHHccccccCCCCcccc
Confidence 45666663 3 3455554443
No 237
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.82 E-value=11 Score=35.62 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
++++.++.+.+.|++|+++. ....+|.-++...+++.|.+-|.+
T Consensus 105 G~e~f~~~~~~aGvdGviip------------------------------------DLp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP------------------------------------DLPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC------------------------------------CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 56677777778888888775 223466666666777777777776
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCeEEEe--CCCCCCC--CCC---HHHHHHHh---cCCCEEEEeecCch
Q 018443 157 INPYYGKTSLEGLISHFDSVLSMGPTIIYN--VPSRTGQ--DIP---PRVIHTMA---QSPNLAGVKECVGN 218 (356)
Q Consensus 157 ~pP~y~~~s~~~l~~y~~~va~~~PiilYn--~P~~tG~--~ls---~~~l~~La---~~pnivGiK~s~~d 218 (356)
++|.. +++.+ +.+++..+=++|- .-+.||. .++ .+.+.++. +.|-++|.-.++.+
T Consensus 149 vap~t---~~eri----~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e 213 (258)
T PRK13111 149 VAPTT---TDERL----KKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPE 213 (258)
T ss_pred eCCCC---CHHHH----HHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHH
Confidence 66644 33332 2233333323332 2223444 222 23445554 34667777766554
No 238
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=87.78 E-value=9.3 Score=35.28 Aligned_cols=116 Identities=16% Similarity=-0.015 Sum_probs=73.3
Q ss_pred EeeecccCCCCCCCHHHH-----HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 018443 61 TAIKTPYLPDGRFDLEAY-----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSN 134 (356)
Q Consensus 61 ~al~TPf~~dg~ID~~~l-----~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~-~grvpVi~gvg~~ 134 (356)
++++.=|. .|.-..+.- ..-++..++.|++.+-+.-..|-.-+=..++-.+.+..+++.+ +..+|+|+= +-.
T Consensus 57 ~~~vi~fp-~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l 134 (236)
T PF01791_consen 57 VGLVIGFP-FGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYL 134 (236)
T ss_dssp EEEEESTT-TSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECE
T ss_pred cceEEEeC-CCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Eec
Confidence 33333443 355555555 7889999999999987766663322223566666666666655 557898887 433
Q ss_pred CHHH---------HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 135 STRE---------AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 135 st~~---------ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
...+ ....+|.+.++|||.+=...|.. .....+-.+-++++.+.
T Consensus 135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~ 187 (236)
T PF01791_consen 135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEA 187 (236)
T ss_dssp CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHT
T ss_pred CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHh
Confidence 4444 57888889999999999988855 44444445556666654
No 239
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=87.70 E-value=2.7 Score=42.39 Aligned_cols=74 Identities=15% Similarity=0.289 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCe-EEEeCCCC--------CCCCCCHHHHHHHhcCCCEE
Q 018443 141 HATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPT-IIYNVPSR--------TGQDIPPRVIHTMAQSPNLA 210 (356)
Q Consensus 141 ~lar~a~~~Gadavlv~pP~y-~~~s~~~l~~y~~~va~~~Pi-ilYn~P~~--------tG~~ls~~~l~~La~~pniv 210 (356)
++++.|...|+..++..|=-. ...+.+++ +++.+.++..|+ +++..|.. .|..+..+.++++.+.|+|+
T Consensus 27 ~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~-~~~~~~a~~~p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vv 105 (422)
T cd01295 27 EFAKAVLPHGTTTVIADPHEIANVAGVDGI-EFMLEDAKKTPLDIFWMLPSCVPATPFETSGAELTAEDIKELLEHPEVV 105 (422)
T ss_pred HHHHHHHCCCcEEEEeCCCCCCcCCCHHHH-HHHHHHHhCCCceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcCCCCc
Confidence 468889999999988754222 22344554 455556666786 56677752 23456788899999889999
Q ss_pred EEeec
Q 018443 211 GVKEC 215 (356)
Q Consensus 211 GiK~s 215 (356)
|+|+.
T Consensus 106 glgE~ 110 (422)
T cd01295 106 GLGEV 110 (422)
T ss_pred EEEEe
Confidence 99997
No 240
>PLN02321 2-isopropylmalate synthase
Probab=87.59 E-value=3.6 Score=43.93 Aligned_cols=102 Identities=23% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFA 148 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g~~st~~ai~lar~a~~ 148 (356)
.++.|.+-+.+.++..++.|++-|.++-|+|= ++++|-.++++.+.+.+++.-++.+++ .+++.--++.-+-.|.+
T Consensus 234 a~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~ 310 (632)
T PLN02321 234 AGRSDPEFLYRILGEVIKAGATTLNIPDTVGY---TLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAH 310 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecccccC---CCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999984 689999999999988876532344444 56778889999999999
Q ss_pred cCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018443 149 VGMHAALHINPYYG----KTSLEGLISHFD 174 (356)
Q Consensus 149 ~Gadavlv~pP~y~----~~s~~~l~~y~~ 174 (356)
+||+.+-..-=-++ ..+-++++..++
T Consensus 311 AGA~~Vd~TinGlGERaGNa~LEevv~~L~ 340 (632)
T PLN02321 311 AGARQVEVTINGIGERAGNASLEEVVMAIK 340 (632)
T ss_pred hCCCEEEEecccccccccCccHHHHHHHHH
Confidence 99999876643332 234455555543
No 241
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.51 E-value=4.1 Score=40.49 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=83.0
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
-.|..+. +++-+ -++.|.+-+.+.++.+.+.|++.|.++-|+| .+++++-.++++.+.+..+ +|+=++ ++++
T Consensus 123 ~~G~~v~-~~~ed-a~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~li~~l~~~~~--~~l~~H-~Hnd 194 (363)
T TIGR02090 123 EHGLIVE-FSAED-ATRTDIDFLIKVFKRAEEAGADRINIADTVG---VLTPQKMEELIKKLKENVK--LPISVH-CHND 194 (363)
T ss_pred HcCCEEE-EEEee-cCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHhcccC--ceEEEE-ecCC
Confidence 4464433 34433 3678999999999999999999999999998 7899999999998887553 554443 4677
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDS 175 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~~ 175 (356)
..-++.-+-.|.++||+.+-..---.+ ..+-++++.+.+.
T Consensus 195 ~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 195 FGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred CChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHHH
Confidence 888999999999999998866544332 3455666666543
No 242
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=87.45 E-value=5.1 Score=39.37 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC----cccccCCCHHHHHHHHHHHHHHhC-----CCcEEEEecCCCCH-HHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQLMSWDEHIMLIGHTVNCFG-----ASVKVIGNTGSNST-REAIHAT 143 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gs----tGE~~~Lt~eEr~~li~~~~~~~~-----grvpVi~gvg~~st-~~ai~la 143 (356)
.++.+.+.++.+-+ .+|++-+|=| .|+-..-..+.-.++++.+.+.++ .++||++=++.+-+ ++..+.+
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia 230 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIA 230 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH
Confidence 56777777777654 5888877432 244444456667777777777664 24899998887654 4788889
Q ss_pred HHHHHcCCCEEEEcCCCC
Q 018443 144 EQGFAVGMHAALHINPYY 161 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y 161 (356)
+.+++.|+|++.+++-.+
T Consensus 231 ~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTV 248 (335)
T ss_pred HHHHHhCCcEEEEECCCC
Confidence 999999999999987553
No 243
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=87.36 E-value=1.8 Score=43.01 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
+..+.+.|++||.|.|+-|-...-...--. .+-.+++.+++++|||+-=|=.+--|.+ .|..+|||+|.+.-|+.
T Consensus 239 a~~~~~~G~~~i~vs~hGGr~~d~~~~~~~-~L~~i~~~~~~~~~i~~dgGir~g~Dv~----kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 239 AKRAVDAGVDGIDVSNHGGRQLDWGPPTID-ALPEIRAAVGDDIPIIADGGIRRGLDVA----KALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHTT-SEEEEESGTGTSSTTS-BHHH-HHHHHHHHHTTSSEEEEESS--SHHHHH----HHHHTT-SEEEESHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCcccccccc-ccHHHHhhhcCCeeEEEeCCCCCHHHHH----HHHHcCCCeEEEccHHH
Confidence 456788999999999888765333333333 3334555567899999855443444433 35679999999999987
Q ss_pred CCC---CHHHHHHHHHHHHhc
Q 018443 162 GKT---SLEGLISHFDSVLSM 179 (356)
Q Consensus 162 ~~~---s~~~l~~y~~~va~~ 179 (356)
+.. .++++.++++.+.++
T Consensus 314 ~~l~~~g~~gv~~~~~~l~~e 334 (356)
T PF01070_consen 314 YALAAGGEEGVERVLEILKEE 334 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 643 567787777766554
No 244
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.33 E-value=3 Score=38.20 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=51.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
...+++.+.+.|++.+++.+.+-+...-. .-.++++.+.+.+ ++||+++=|-.+.++..++ .+.|+|++++.
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g--~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~----~~~Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSG--PNFELYKELAAAT--GIPVIASGGVSSLDDIKAL----KELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCC--CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHH----HHCCCCEEEEe
Confidence 34567778889999998876543333211 2245566666554 6899998777777664443 33599999997
Q ss_pred CCCCC
Q 018443 158 NPYYG 162 (356)
Q Consensus 158 pP~y~ 162 (356)
.-.|.
T Consensus 220 ~~~~~ 224 (234)
T cd04732 220 KALYE 224 (234)
T ss_pred HHHHc
Confidence 66553
No 245
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=87.30 E-value=9.2 Score=36.06 Aligned_cols=90 Identities=12% Similarity=0.206 Sum_probs=64.1
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHH------------------------HHHHHHCCCCEEEEccCcccccCCCHHH
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDL------------------------VNMQIVNGAEGMIVGGTTGEGQLMSWDE 109 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~------------------------v~~li~~Gv~Gl~v~GstGE~~~Lt~eE 109 (356)
....|++--.+| +||+||.+.++++ ++++++.|++.|+..|... +..|
T Consensus 85 ~GadGvV~G~L~---~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~-----~a~~ 156 (248)
T PRK11572 85 LGFPGLVTGVLD---VDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ-----DAEQ 156 (248)
T ss_pred cCCCEEEEeeEC---CCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC-----CHHH
Confidence 345676666555 5999999998765 5678899999998776654 4778
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 110 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 110 r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
=...++..++.+++++ |++|-|= +.+..-++ . +.|+..+=..
T Consensus 157 g~~~L~~lv~~a~~~~-Im~GgGV-~~~Nv~~l-~---~tG~~~~H~s 198 (248)
T PRK11572 157 GLSLIMELIAASDGPI-IMAGAGV-RLSNLHKF-L---DAGVREVHSS 198 (248)
T ss_pred HHHHHHHHHHhcCCCE-EEeCCCC-CHHHHHHH-H---HcCCCEEeeC
Confidence 8888888888877765 8887664 34444343 2 4788877544
No 246
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=4.3 Score=40.16 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=52.7
Q ss_pred HHHHHHCCCCEEEEccC--cccc--cCCCHHHHHHHHHHHHHHhCCCcEEEEecCC--CCHHHHHHHHHHHHHcCCCEEE
Q 018443 82 VNMQIVNGAEGMIVGGT--TGEG--QLMSWDEHIMLIGHTVNCFGASVKVIGNTGS--NSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~Gs--tGE~--~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~--~st~~ai~lar~a~~~Gadavl 155 (356)
+...++.|+|.|++++. ++-. ..+|.+|-.+.++.+-+. +.++-|.+++.. ...+...+..+.+.+.|+|++.
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDavi 97 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVI 97 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHc-CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEE
Confidence 34566789999998765 3333 349999988888766553 223444444422 2344457888999999999999
Q ss_pred EcCCC
Q 018443 156 HINPY 160 (356)
Q Consensus 156 v~pP~ 160 (356)
+.-|.
T Consensus 98 v~Dpg 102 (347)
T COG0826 98 VADPG 102 (347)
T ss_pred EcCHH
Confidence 98763
No 247
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=87.20 E-value=2.6 Score=39.23 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred HHHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEEEE--ecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 81 LVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~--gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
+.++|.+.||..+..+| -.|-+.-+...+-.+++ ++.+ ++|||+ |+|.. .+ |-.|.++|+|+|++-
T Consensus 143 ~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~ii---ie~a--~VPviVDAGiG~p--Sd----Aa~aMElG~DaVL~N 211 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEII---IEEA--DVPVIVDAGIGTP--SD----AAQAMELGADAVLLN 211 (262)
T ss_pred HHHHHHhcCceEeccccccccCCcCcCCHHHHHHH---HHhC--CCCEEEeCCCCCh--hH----HHHHHhcccceeehh
Confidence 56778899999999888 35666666555554444 4554 899998 55554 33 456789999999988
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q 018443 158 NPYYGKTSLEGLISHFDSV 176 (356)
Q Consensus 158 pP~y~~~s~~~l~~y~~~v 176 (356)
...-...++-.+-+-|+.-
T Consensus 212 TAiA~A~DPv~MA~Af~~A 230 (262)
T COG2022 212 TAIARAKDPVAMARAFALA 230 (262)
T ss_pred hHhhccCChHHHHHHHHHH
Confidence 7665555555554444433
No 248
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=87.17 E-value=2.8 Score=38.29 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018443 110 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 188 (356)
Q Consensus 110 r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P 188 (356)
-.+-++.+.+..+-.+.++ +-+..+.++.++.++.+.+.|+|++++.|+.. +.+...++.+.++ .||+.+|.+
T Consensus 16 ~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-----DSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSST-----TTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-----HHHHHHHHHHhhcCceEEEEecc
Confidence 3344445555554443333 67777889999999999999999999887633 3445666777777 799999987
No 249
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.07 E-value=2.1 Score=39.06 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
+...++++.+.+.|++.|.+.+.+.+..... .-..+.++.+.+. .++||++.=+-.+.+++.++.+. -|+|+|+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~~i~~~--~~ipvi~~Ggi~~~~d~~~~l~~---~gad~V~ 211 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSG-PADWDYIAEIKEA--VSIPVIANGDIFSLEDALRCLEQ---TGVDGVM 211 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCC-CCCHHHHHHHHhC--CCCeEEEeCCCCCHHHHHHHHHh---cCCCEEE
Confidence 5788889999999999999988776542111 1123344444443 36898875555566665555432 4899999
Q ss_pred EcCCCCCCC
Q 018443 156 HINPYYGKT 164 (356)
Q Consensus 156 v~pP~y~~~ 164 (356)
+.-+.+..|
T Consensus 212 igr~~l~~P 220 (231)
T cd02801 212 IGRGALGNP 220 (231)
T ss_pred EcHHhHhCC
Confidence 998877554
No 250
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.02 E-value=2.8 Score=40.80 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcc-cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstG-E~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
...++++.+.+.|++.|.|-|-|. ++++-..- .-+.+..+.+.+ ++|||+.=+=.+.+++.++. +..|+|+||
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~-~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l---~~~g~DgVm 222 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHI-NWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCM---AITGCDAVM 222 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcc-cHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHH---hccCCCEEE
Confidence 367888889899999999966554 33332211 124555555554 58987543334666666655 346999999
Q ss_pred EcCCCCCCC
Q 018443 156 HINPYYGKT 164 (356)
Q Consensus 156 v~pP~y~~~ 164 (356)
+.-..+..|
T Consensus 223 iGRg~l~nP 231 (312)
T PRK10550 223 IGRGALNIP 231 (312)
T ss_pred EcHHhHhCc
Confidence 988766555
No 251
>PLN02321 2-isopropylmalate synthase
Probab=87.01 E-value=29 Score=37.24 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC 120 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~ 120 (356)
.+..+.-.++++.|.+.|++-|=+ | ++..|..|... ++.+.+.
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEv-G----fP~~Sp~D~e~-vr~i~~~ 146 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEA-G----FPIASPDDLEA-VKTIAKE 146 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-e----CcCCCccHHHH-HHHHHHh
Confidence 588999999999999999999965 2 33455445444 4444443
No 252
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.98 E-value=3.6 Score=38.79 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc--cCcccccCCCH-HHHHHHHHHHHHHhCCCcEEEEecCCCCH--HHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVG--GTTGEGQLMSW-DEHIMLIGHTVNCFGASVKVIGNTGSNST--REAIHATEQG 146 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~--GstGE~~~Lt~-eEr~~li~~~~~~~~grvpVi~gvg~~st--~~ai~lar~a 146 (356)
.-+.+.+..-++++.+.|.+-++++ |+ ..+...+. .--...+....+.. .+||+++.++..- +-...+++.|
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AA 208 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGV-RGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIA 208 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccc-CCCCCccccccCHHHHHHHHHHh--CCCeEECCCCCCcccchHHHHHHHH
Confidence 5788899999999999999888777 55 44454422 22223344444434 5799999875322 2245778899
Q ss_pred HHcCCCEEEEc
Q 018443 147 FAVGMHAALHI 157 (356)
Q Consensus 147 ~~~Gadavlv~ 157 (356)
..+|||++++-
T Consensus 209 vA~GAdGl~IE 219 (250)
T PRK13397 209 KAVGANGIMME 219 (250)
T ss_pred HHhCCCEEEEE
Confidence 99999999875
No 253
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=86.93 E-value=1.7 Score=43.30 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccC-CCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~-Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
....++++.++++|++.|++-|+|=+... -...+...+.+.. +.. ++|||+|-. .+.++ ++++.+.|+|+|
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i-~~~--~IPVI~G~V-~t~e~----A~~~~~aGaDgV 213 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFI-GEL--DVPVIAGGV-NDYTT----ALHLMRTGAAGV 213 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHH-HHC--CCCEEEeCC-CCHHH----HHHHHHcCCCEE
Confidence 45678888899999999999887622111 0112233444333 323 689997332 23444 455556899999
Q ss_pred EE
Q 018443 155 LH 156 (356)
Q Consensus 155 lv 156 (356)
++
T Consensus 214 ~~ 215 (369)
T TIGR01304 214 IV 215 (369)
T ss_pred EE
Confidence 93
No 254
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=86.90 E-value=6.4 Score=36.97 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=56.3
Q ss_pred ceeEee--ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEEe----
Q 018443 58 RLITAI--KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGN---- 130 (356)
Q Consensus 58 Gvi~al--~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~g---- 130 (356)
+++..+ -+|+-.+. . ...+...++..++.|++++-+--..|. .+..|..+.++.+.+.+. ..+|+++-
T Consensus 72 ~~~~~~~~~~~~g~~~-~-~~~~~~~v~~al~~Ga~~v~~~~~~g~---~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~ 146 (258)
T TIGR01949 72 GLIIHLSASTSLSPDP-N-DKRIVTTVEDAIRMGADAVSIHVNVGS---DTEWEQIRDLGMIAEICDDWGVPLLAMMYPR 146 (258)
T ss_pred cEEEEEcCCCCCCCCC-C-cceeeeeHHHHHHCCCCEEEEEEecCC---chHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 355555 45553222 1 123445688889999998866554442 244566667777776543 46777662
Q ss_pred ---cCCCCHHHHHHH-HHHHHHcCCCEEEE
Q 018443 131 ---TGSNSTREAIHA-TEQGFAVGMHAALH 156 (356)
Q Consensus 131 ---vg~~st~~ai~l-ar~a~~~Gadavlv 156 (356)
++..+. +.++. ++.|.+.|||.+-.
T Consensus 147 Gvh~~~~~~-~~~~~~~~~a~~~GADyikt 175 (258)
T TIGR01949 147 GPHIDDRDP-ELVAHAARLGAELGADIVKT 175 (258)
T ss_pred CcccccccH-HHHHHHHHHHHHHCCCEEec
Confidence 333333 44444 68888899998885
No 255
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=86.84 E-value=7.7 Score=33.39 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH-HHHHHHHcCCCEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH-ATEQGFAVGMHAA 154 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~-lar~a~~~Gadav 154 (356)
+...+.++.+.+.|++.+.+..............+ ++++...+.. .+|+++++..++..+.+. .++.+.++|+|++
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK-EVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccc-cHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEE
Confidence 67788888888899988876544444333322211 2343444333 578999988776666554 3688999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018443 155 LHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 188 (356)
Q Consensus 155 lv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P 188 (356)
.+...-.+ ..+...++.+++.+. .|+++.-.+
T Consensus 89 ~l~~~~~~--~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 89 EIHGAVGY--LAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred EEeccCCc--HHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 87654221 145566677777664 466665543
No 256
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=86.80 E-value=19 Score=34.70 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=82.7
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHH----HHHHHHHHHHhCCCcEEEEecCCCCHH-HHHHHHHHHHHcCCCEEEE
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEH----IMLIGHTVNCFGASVKVIGNTGSNSTR-EAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr----~~li~~~~~~~~grvpVi~gvg~~st~-~ai~lar~a~~~Gadavlv 156 (356)
++.+-+.|++..++-+ .++...+-+..+ .++++.+.+ ..+|.--.+.+--.+.+ .+.|+-|.+.+.|..++.+
T Consensus 55 ~~~~~~~~i~~~~~~~-~~~~~~~~d~~~~~~nd~~a~~~~~-~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSG-MGEVAIIPDLRRALANDDLAALAAE-YPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL 132 (293)
T ss_pred HhhhcccccceEEeec-cccccchHHHhhhhhhHHHHHHHhh-CCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe
Confidence 6666678888888776 455555444444 355554443 34453333344333334 4455666667789999999
Q ss_pred cCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCC-----CCHHHHHHHh-cCCCEEEEeecCc
Q 018443 157 INPYYG-KTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQD-----IPPRVIHTMA-QSPNLAGVKECVG 217 (356)
Q Consensus 157 ~pP~y~-~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~-----ls~~~l~~La-~~pnivGiK~s~~ 217 (356)
.|+.-. .++++.+.--|+...+. +||+++.-+...+.. ..+-.+..++ ++|++.=|=--.|
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecC
Confidence 988654 56667777777777776 799998755443332 2345677777 6888654443333
No 257
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=86.80 E-value=30 Score=36.02 Aligned_cols=138 Identities=15% Similarity=0.096 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-------CcEEEEecCCCCHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-------SVKVIGNTGSNSTREAIHATE 144 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-------rvpVi~gvg~~st~~ai~lar 144 (356)
.+..+.=.++++.|.+.||+-|=+ |+ +..+.+|+.. ++.+.+.... -.+.+.+.+.. .++-++.+.
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEv-G~----Pa~s~~e~e~-i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEV-GF----PGSSEEEFEA-VKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-eC----CCCCHHHHHH-HHHHHHhcccccccccccceEEeeeccc-CHhhHHHHH
Confidence 488899999999999999998854 33 7788888766 4444443221 13566666554 333455554
Q ss_pred HH-HHcCCCEEEEcCCCC-------CCCCHHHHHHHHHHHHhc----C-CeEEEeCCCCCCCCCCHHHHHHHh----cC-
Q 018443 145 QG-FAVGMHAALHINPYY-------GKTSLEGLISHFDSVLSM----G-PTIIYNVPSRTGQDIPPRVIHTMA----QS- 206 (356)
Q Consensus 145 ~a-~~~Gadavlv~pP~y-------~~~s~~~l~~y~~~va~~----~-PiilYn~P~~tG~~ls~~~l~~La----~~- 206 (356)
.+ .+.|++.+.+..|.. .+.+.++.++-..+..+. . ..+.+..+.. ..-+++.+.+++ +.
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa--~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDG--GRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccc--cccCHHHHHHHHHHHHhcC
Confidence 44 334777787766642 234666666555554432 2 2355555532 234566655554 33
Q ss_pred CCEEEEeecCch
Q 018443 207 PNLAGVKECVGN 218 (356)
Q Consensus 207 pnivGiK~s~~d 218 (356)
...+.++|+.|-
T Consensus 253 ad~I~l~DTvG~ 264 (503)
T PLN03228 253 ATSVGIADTVGI 264 (503)
T ss_pred CCEEEEecCCCC
Confidence 667889999885
No 258
>PRK07094 biotin synthase; Provisional
Probab=86.75 E-value=31 Score=33.25 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
+++.+.+.+.++.+.+.|++.+++. .||-..+..+.-.++++.+.+. ..+.+-..++.. ++ +.++..+++|+
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~--gG~~~~~~~~~l~~l~~~i~~~--~~l~i~~~~g~~-~~---e~l~~Lk~aG~ 140 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQ--SGEDPYYTDEKIADIIKEIKKE--LDVAITLSLGER-SY---EEYKAWKEAGA 140 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCCCHHHHHHHHHHHHcc--CCceEEEecCCC-CH---HHHHHHHHcCC
Confidence 4688888899999999999999875 3554556777777777776654 245555555543 33 34556667899
Q ss_pred CEEEEcCCCC--------C-CCCHHHHHHHHHHHHhc-C---CeEEEeCCCCCCCCCCHHHHHHHhcC-CCEEEEee---
Q 018443 152 HAALHINPYY--------G-KTSLEGLISHFDSVLSM-G---PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKE--- 214 (356)
Q Consensus 152 davlv~pP~y--------~-~~s~~~l~~y~~~va~~-~---PiilYn~P~~tG~~ls~~~l~~La~~-pnivGiK~--- 214 (356)
+.+.+-.=.. . +.+.++.++-.+.+.+. . .-+++..|..|--++ .+++..+.++ +..+++-.
T Consensus 141 ~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~-~~~l~~l~~l~~~~v~~~~~~P 219 (323)
T PRK07094 141 DRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDL-ADDILFLKELDLDMIGIGPFIP 219 (323)
T ss_pred CEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHH-HHHHHHHHhCCCCeeeeecccc
Confidence 9988643221 1 24666766666666665 2 446777775432111 2333334443 34444321
Q ss_pred ---------cCch--h--hH---hhhhCC--CeEEEecCcc---hhHhHHHHcCCceeecccccccHHHHHHHHH
Q 018443 215 ---------CVGN--D--RV---EHYTGN--GIVVWSGNDD---QCHDARWNHGATGVISVTSNLVPGMMRELMF 268 (356)
Q Consensus 215 ---------s~~d--~--~i---~~~~~~--~~~v~~G~d~---~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~ 268 (356)
...+ . ++ .++.-+ ++...++... .....++..|+++++. |+-|+.++.-|+
T Consensus 220 ~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~---~~~~~~~~~~~~ 291 (323)
T PRK07094 220 HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP---NLTPGEYRKLYS 291 (323)
T ss_pred CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC---CCCchhhCcccc
Confidence 1111 1 21 122212 3433233211 1112247889998864 677999988765
No 259
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=86.73 E-value=11 Score=36.08 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
+.|.+-+.++++.+.+.|++.|.+.-|+|- +++++-.++++.+.+... .+|+=++. +++.--++.-+-.|.++|+
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~l~~~l~~~~~-~~~i~~H~-Hnd~Gla~AN~laA~~aGa 217 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKRIMLPDTLGI---LSPFETYTYISDMVKRYP-NLHFDFHA-HNDYDLAVANVLAAVKAGI 217 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999999999995 688888888888877653 46665554 6778889999999999999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHH
Q 018443 152 HAALHINPYYG----KTSLEGLISHF 173 (356)
Q Consensus 152 davlv~pP~y~----~~s~~~l~~y~ 173 (356)
+.+=..---.+ ..+-+++..++
T Consensus 218 ~~vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 218 KGLHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred CEEEEecccccccccCccHHHHHHHH
Confidence 98866544332 24456666555
No 260
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=86.68 E-value=23 Score=32.85 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred EeeecccCCCCC---CCHHHHHHHH----HHHHHCCCCEEEEccCcccccCCCH----HHHHHHHHHHHHHhCCCcEEEE
Q 018443 61 TAIKTPYLPDGR---FDLEAYDDLV----NMQIVNGAEGMIVGGTTGEGQLMSW----DEHIMLIGHTVNCFGASVKVIG 129 (356)
Q Consensus 61 ~al~TPf~~dg~---ID~~~l~~~v----~~li~~Gv~Gl~v~GstGE~~~Lt~----eEr~~li~~~~~~~~grvpVi~ 129 (356)
..++|=+. ||+ +..+.+...+ +.+-+.|++-++ +-.||||..|+. =|=.+++..+++...+.- -+
T Consensus 53 ~vLvTrL~-DG~~V~ls~~~v~~~lq~~i~~le~~G~d~il-llCTG~F~~l~~~~~lleP~ril~~lV~al~~~~--~v 128 (221)
T PF07302_consen 53 YVLVTRLR-DGTQVVLSKKKVEPRLQACIAQLEAQGYDVIL-LLCTGEFPGLTARNPLLEPDRILPPLVAALVGGH--QV 128 (221)
T ss_pred ceeEEEeC-CCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEE-EeccCCCCCCCCCcceeehHHhHHHHHHHhcCCC--eE
Confidence 34555443 553 5665555444 456678999986 567999998883 345677777777654432 33
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCH-HHHHHHhcC
Q 018443 130 NTGSNSTREAIHATEQGFAVGMHAALHI-NPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPP-RVIHTMAQS 206 (356)
Q Consensus 130 gvg~~st~~ai~lar~a~~~Gadavlv~-pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~-~~l~~La~~ 206 (356)
||-....++.-..++..+..+.+-.... .||. .+.+++.+--+++.+. ..+++-|. .|+.-.. +.+++....
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~--~~~~~l~~Aa~~L~~~gadlIvLDC---mGYt~~~r~~~~~~~g~ 203 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYE--GDEEELAAAARELAEQGADLIVLDC---MGYTQEMRDIVQRALGK 203 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCC--CCHHHHHHHHHHHHhcCCCEEEEEC---CCCCHHHHHHHHHHhCC
Confidence 5555555666667888888877655444 4543 4678899988999877 68888884 4544332 334444444
Q ss_pred CC
Q 018443 207 PN 208 (356)
Q Consensus 207 pn 208 (356)
|-
T Consensus 204 PV 205 (221)
T PF07302_consen 204 PV 205 (221)
T ss_pred CE
Confidence 43
No 261
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=86.65 E-value=10 Score=32.03 Aligned_cols=85 Identities=7% Similarity=-0.040 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
.+..++...+.+++-+.+++..+. +.+.-.++++...+.-.++++|++|=.- ..++ .+..+++|+|++.-.
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~~~----~~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDKLGRPDILVVVGGVI-PPQD----FDELKEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHh----HHHHHHCCCCEEECC
Confidence 456778888999999999888876 5556667777666544447788886222 1222 234788999998632
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q 018443 158 NPYYGKTSLEGLISHFDSV 176 (356)
Q Consensus 158 pP~y~~~s~~~l~~y~~~v 176 (356)
..+..++.+++..-
T Consensus 113 -----gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 113 -----GTPIPESAIFLLKK 126 (132)
T ss_pred -----CCCHHHHHHHHHHH
Confidence 34667777777653
No 262
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=86.63 E-value=10 Score=39.74 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccccc-----CCCHHHHHHHHHHHHHHhCC-CcEEEEec------CCCCHHHHHHHHHHH
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT------GSNSTREAIHATEQG 146 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~-----~Lt~eEr~~li~~~~~~~~g-rvpVi~gv------g~~st~~ai~lar~a 146 (356)
.+.++.+++.|.+.+.+..++++.+ .+|.+|-.+.+..+++.+.. ...|..+. +..+.+..++.++.+
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a 163 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATA 163 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHH
Confidence 3456667788999998888887654 56888888888777776543 23343322 245788999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018443 147 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 181 (356)
Q Consensus 147 ~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P 181 (356)
.++|+|.+.+. =..+..+++++.+.++.+.+..|
T Consensus 164 ~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 164 QQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 99999988765 34566788889999999887744
No 263
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.60 E-value=19 Score=34.20 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 136 TREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.+|+-++.+.+++.|.+.+.+++|.
T Consensus 130 ~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 130 YEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4555566666666666666666654
No 264
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=86.54 E-value=14 Score=32.31 Aligned_cols=132 Identities=15% Similarity=0.091 Sum_probs=77.3
Q ss_pred HHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE---ecCCC---------C------HHHHHHHHH
Q 018443 83 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG---NTGSN---------S------TREAIHATE 144 (356)
Q Consensus 83 ~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~---gvg~~---------s------t~~ai~lar 144 (356)
+.+.+.|.++|=+....+.....-.++..++.+.+.+ . .+.|.. ..... . .+...+.++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 78 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-Y--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAID 78 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-T--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-c--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHH
Confidence 4566788888876665554333223444444443333 3 344322 11111 1 567777888
Q ss_pred HHHHcCCCEEEEcCC---CCCCCCH----HHHHHHHHHHHhc-----CCeEEEeCCCCCCC-CCCHHHHHHHh---cCCC
Q 018443 145 QGFAVGMHAALHINP---YYGKTSL----EGLISHFDSVLSM-----GPTIIYNVPSRTGQ-DIPPRVIHTMA---QSPN 208 (356)
Q Consensus 145 ~a~~~Gadavlv~pP---~y~~~s~----~~l~~y~~~va~~-----~PiilYn~P~~tG~-~ls~~~l~~La---~~pn 208 (356)
.|+.+|++.+.+.++ .....+. +.+.+.++.+++. +-+.+.|.|..... ..+.+.+.++. ..||
T Consensus 79 ~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 79 LAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp HHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred HHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 899999999998877 3433332 4466667777653 47889998865432 23346676766 3577
Q ss_pred EEEEeecCch
Q 018443 209 LAGVKECVGN 218 (356)
Q Consensus 209 ivGiK~s~~d 218 (356)
+|+-...++
T Consensus 159 -~~i~~D~~h 167 (213)
T PF01261_consen 159 -VGICFDTGH 167 (213)
T ss_dssp -EEEEEEHHH
T ss_pred -ceEEEehHH
Confidence 677765554
No 265
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.37 E-value=6.6 Score=35.67 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=46.6
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
++...+.|++.+.+.+..+....... +.++.+.+.+..++||+++-|-.+.++.. .+.++|+|++++..-.|
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~----~~~~~l~~~~~~~~pvia~gGI~s~edi~----~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDL----NTTERLAPLIPKDVILVSESGISTPEDVK----RLAEAGADAVLIGESLM 205 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCH----HHHHHHHHhCCCCCEEEEEcCCCCHHHHH----HHHHcCCCEEEECHHHc
Confidence 34445567777766554444332222 34455555444567999877765555544 44566999999987766
Q ss_pred CCCCHH
Q 018443 162 GKTSLE 167 (356)
Q Consensus 162 ~~~s~~ 167 (356)
...++.
T Consensus 206 ~~~~p~ 211 (217)
T cd00331 206 RAPDPG 211 (217)
T ss_pred CCCCHH
Confidence 555543
No 266
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=86.35 E-value=2.7 Score=42.61 Aligned_cols=106 Identities=9% Similarity=0.046 Sum_probs=63.9
Q ss_pred HHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.++...+.|++++.+.|.+.+ ..-.++++.+.+ ..+++++|+.+ +...++.++.+.+.|+|.+.+. |.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~------~~~~~~i~~a~~---~G~~~~~g~~s--~~t~~e~~~~a~~~GaD~I~~~-pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADD------STIEDAVRAARK---YGVRLMADLIN--VPDPVKRAVELEELGVDYINVH-VG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCCh------HHHHHHHHHHHH---cCCEEEEEecC--CCCHHHHHHHHHhcCCCEEEEE-ec
Confidence 777888999999998765432 122345554444 24567776422 2224566788899999999765 54
Q ss_pred CCC-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 161 YGK-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 161 y~~-~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
|.. .......++++++.+. .|++.- | .++++.+.++.+
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a~------G-GI~~~n~~~~l~ 181 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAVA------G-GLDAETAAKAVA 181 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEEE------C-CCCHHHHHHHHH
Confidence 421 0111234566777664 466542 2 467788877764
No 267
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.25 E-value=5.9 Score=36.41 Aligned_cols=60 Identities=13% Similarity=0.015 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHH
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHT 202 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~ 202 (356)
.+.+++++.+++.|+|.+.+..-.-....+.--.++++++.+. .|++.- |---+++.+.+
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~------GGi~s~~di~~ 214 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIAL------GGAGSLDDLVE 214 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEE------CCCCCHHHHHH
Confidence 4568899999999999999886211110011125556666655 464432 22236777777
No 268
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=86.22 E-value=9.2 Score=34.84 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=65.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
....++.+++.|++.+++..+....+. .++-.++++.+.+.. ++++++++. +.++ ++.+.+.|+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~--~~~~~~~i~~~~~~g--~~~iiv~v~--t~~e----a~~a~~~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPD--GETLAELIKRIHEEY--NCLLMADIS--TLEE----ALNAAKLGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCC--CcCHHHHHHHHHHHh--CCeEEEECC--CHHH----HHHHHHcCCCEEEcc
Confidence 345789999999998877554332111 024456676666543 678888764 3444 477888999998653
Q ss_pred CCCCCC---CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018443 158 NPYYGK---TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 206 (356)
Q Consensus 158 pP~y~~---~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~l-s~~~l~~La~~ 206 (356)
+--+.. .+...-.++.+++.+. .|++. +-.+ +++.+.++.+.
T Consensus 151 ~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia-------~GGI~~~~~~~~~l~~ 198 (219)
T cd04729 151 LSGYTEETAKTEDPDFELLKELRKALGIPVIA-------EGRINSPEQAAKALEL 198 (219)
T ss_pred CccccccccCCCCCCHHHHHHHHHhcCCCEEE-------eCCCCCHHHHHHHHHC
Confidence 211111 0111224566666654 45553 2345 57888887654
No 269
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=86.16 E-value=31 Score=33.69 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccC----------cccccCCCHHHHHHHHHHHHHHhCCCcEEEEec--C--C-CCH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--G--S-NST 136 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~Gs----------tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv--g--~-~st 136 (356)
.-|.+.+.+.++.+.+.|+++|=+|.+ .|-...-..+.-.++++.+.+.++ +||.+=+ | . .+.
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~--~PVsvKiR~g~~~~~~~ 140 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVN--IPVTVKHRIGIDPLDSY 140 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC--CCeEEEEecCCCCcchH
Confidence 457888999999888889999865543 244444566667778887777663 4665533 2 2 245
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCC
Q 018443 137 REAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP 159 (356)
++++++++.+++.|+|++-+.+=
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC
Confidence 78999999999999999987754
No 270
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=86.15 E-value=4.1 Score=39.97 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHH-------HHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD-------EHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 146 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~e-------Er~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a 146 (356)
..+.+.++++.+.+.|++.|.+-|.|+.....+.. -..+.++.+.+.+ .++|||++=+=.+.+++.++.+
T Consensus 149 t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-- 225 (333)
T PRK11815 149 SYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-- 225 (333)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-CCCeEEEECCcCCHHHHHHHHh--
Confidence 35667888999999999999998877622222211 0122344444432 2689886545556777766553
Q ss_pred HHcCCCEEEEcCCCCCCC
Q 018443 147 FAVGMHAALHINPYYGKT 164 (356)
Q Consensus 147 ~~~Gadavlv~pP~y~~~ 164 (356)
|+|+||+.-+.+..|
T Consensus 226 ---~aDgVmIGRa~l~nP 240 (333)
T PRK11815 226 ---HVDGVMIGRAAYHNP 240 (333)
T ss_pred ---cCCEEEEcHHHHhCC
Confidence 699999998877655
No 271
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=86.08 E-value=24 Score=31.38 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc---cCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVG---GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~---GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~ 148 (356)
..|++.+.+.++.+.+.|++-+=+. |..-....++. +.++.+.+. .+.|+.+++-..... +.++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~----~~v~~i~~~--~~~~v~v~lm~~~~~---~~~~~~~~ 77 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGP----PVLEALRKY--TDLPIDVHLMVENPD---RYIEDFAE 77 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCH----HHHHHHHhc--CCCcEEEEeeeCCHH---HHHHHHHH
Confidence 4788999999999999999988653 11212222333 344444433 245666777666544 56778889
Q ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEE--eec--Cch-----
Q 018443 149 VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV--KEC--VGN----- 218 (356)
Q Consensus 149 ~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~~pnivGi--K~s--~~d----- 218 (356)
+|+|++.+..- .+ ++..+..+.+... ..+++--.| .-+.+.++++.+....+++ .+. ++.
T Consensus 78 ~gadgv~vh~~----~~-~~~~~~~~~~~~~g~~~~~~~~~-----~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 78 AGADIITVHPE----AS-EHIHRLLQLIKDLGAKAGIVLNP-----ATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred cCCCEEEEccC----Cc-hhHHHHHHHHHHcCCcEEEEECC-----CCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 99999887431 12 3444444444433 333333222 2236677777654444433 111 111
Q ss_pred --hh---HhhhhC---CCeEE--EecCcchhHhHHHHcCCceeecccccc
Q 018443 219 --DR---VEHYTG---NGIVV--WSGNDDQCHDARWNHGATGVISVTSNL 258 (356)
Q Consensus 219 --~~---i~~~~~---~~~~v--~~G~d~~~l~~~l~~Ga~G~is~~~n~ 258 (356)
.. ++++.+ .++.+ -.|-...-+...+..|++|++.|.+-+
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHh
Confidence 12 222222 22333 234433333334578999998886543
No 272
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.04 E-value=4.7 Score=37.03 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
..+++.+.+.|++.+++.+-+.+...-. -..++++.+.+.+ .+||+++=|-.+.++..+. +++.|+|+|++..
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g--~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~---l~~~gadgV~vg~ 228 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG--YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEV---ALEAGASAVAAAS 228 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC--CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHH---HHHcCCCEEEEeh
Confidence 5677888899999999988444432111 1245566666654 5799887666666666553 3446999999875
Q ss_pred C
Q 018443 159 P 159 (356)
Q Consensus 159 P 159 (356)
-
T Consensus 229 a 229 (232)
T TIGR03572 229 L 229 (232)
T ss_pred h
Confidence 4
No 273
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=85.98 E-value=7.2 Score=38.59 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=70.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 149 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~ 149 (356)
+++.|.+-+.++++.+.+.|++-|.+.-|+|- +++.+-.++++.+.+.++ ..|+-++ .+++.--++.-+-.|.++
T Consensus 191 ~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~---a~P~~v~~lv~~l~~~~~-~~~i~~H-~Hnd~GlA~AN~lAA~~a 265 (347)
T PLN02746 191 EGPVPPSKVAYVAKELYDMGCYEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VDKLAVH-FHDTYGQALANILVSLQM 265 (347)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecCCcCC---cCHHHHHHHHHHHHHhCC-CCeEEEE-ECCCCChHHHHHHHHHHh
Confidence 47899999999999999999999999999996 578898999988887663 3354444 467788899999999999
Q ss_pred CCCEEEEcC
Q 018443 150 GMHAALHIN 158 (356)
Q Consensus 150 Gadavlv~p 158 (356)
|++.+=..-
T Consensus 266 Ga~~vd~sv 274 (347)
T PLN02746 266 GISTVDSSV 274 (347)
T ss_pred CCCEEEEec
Confidence 999886554
No 274
>PLN02979 glycolate oxidase
Probab=85.98 E-value=31 Score=34.42 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEc---------------cC----------c-----c--c---------------ccCCC
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVG---------------GT----------T-----G--E---------------GQLMS 106 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~---------------Gs----------t-----G--E---------------~~~Lt 106 (356)
|.+..++++++-.++|+.++++. |. . + + -..+|
T Consensus 132 Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt 211 (366)
T PLN02979 132 NRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLS 211 (366)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCC
Confidence 77888899999988999888771 10 0 0 0 12456
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 107 WDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 107 ~eEr~~li~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
+++-. ...+.. ++|||+ ||.+ .+-|+.+.++|+|+|.+..
T Consensus 212 W~dl~----wlr~~~--~~PvivKgV~~------~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 212 WKDVQ----WLQTIT--KLPILVKGVLT------GEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred HHHHH----HHHhcc--CCCEEeecCCC------HHHHHHHHhcCCCEEEECC
Confidence 65532 233333 579888 6753 5667788999999998875
No 275
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.95 E-value=7.9 Score=33.35 Aligned_cols=110 Identities=17% Similarity=0.061 Sum_probs=65.2
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
.+++.+.|++++.+.++.+-. .++-.++++.+.+.+ +++++++.+......+.. + +.+.|+|.+.+.+-+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~---~-~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----AREDLELIRELREAV-PDVKVVVKLSPTGELAAA---A-AEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhc-CCceEEEEECCCCccchh---h-HHHcCCCEEEEcCCcC
Confidence 567888999999998887643 455566677777666 467888888654332211 1 6788999999876544
Q ss_pred CCCCH---HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 162 GKTSL---EGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 162 ~~~s~---~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
..... .........+... .|++. + .|+. +++.+.++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~-~----GGi~-~~~~~~~~~~~ 191 (200)
T cd04722 148 GGGGRDAVPIADLLLILAKRGSKVPVIA-G----GGIN-DPEDAAEALAL 191 (200)
T ss_pred CCCCccCchhHHHHHHHHHhcCCCCEEE-E----CCCC-CHHHHHHHHHh
Confidence 22111 1112333334333 45543 2 2332 44777776643
No 276
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=85.95 E-value=9.4 Score=35.78 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred HCCCCEEEEccCccc-------ccCCCHHHHHHHHHHHHHHhCCCcEEEEec--CC-CCHHHHHHHHHHHHHcCCCEEEE
Q 018443 87 VNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GS-NSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 87 ~~Gv~Gl~v~GstGE-------~~~Lt~eEr~~li~~~~~~~~grvpVi~gv--g~-~st~~ai~lar~a~~~Gadavlv 156 (356)
++|++.+++.|+.+= ...+|.+|-...++.+.+.+. ..||++-. |. .+.+++++.++...++||++|-+
T Consensus 30 ~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 30 DAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEE
Confidence 459999999876542 235788888888888777653 57999854 32 25599999999999999999998
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc-CCeE
Q 018443 157 INPYYGKTSLEGLISHFDSVLSM-GPTI 183 (356)
Q Consensus 157 ~pP~y~~~s~~~l~~y~~~va~~-~Pii 183 (356)
-- +.+..+-.+++.++ .||+
T Consensus 109 ED-------~~~~~~~i~ai~~a~i~Vi 129 (240)
T cd06556 109 EG-------GEWHIETLQMLTAAAVPVI 129 (240)
T ss_pred cC-------cHHHHHHHHHHHHcCCeEE
Confidence 64 34555555666555 4555
No 277
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.80 E-value=8.4 Score=38.32 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCccc----ccC-----------CCHHHHHHHHHHHHHH----hCCCc
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTGE----GQL-----------MSWDEHIMLIGHTVNC----FGASV 125 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~GstGE----~~~-----------Lt~eEr~~li~~~~~~----~~grv 125 (356)
.++.+.++.+++ ...++|.|||-+.+..|- |.+ =|.+-|.+++..+++. ++.+.
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 355555555554 455689999988776641 111 1567777666666554 44455
Q ss_pred EEEEecC-----------CCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 126 KVIGNTG-----------SNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 126 pVi~gvg-----------~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
||.+=++ +.+.++++++++..++.|+|.+-+...
T Consensus 213 ~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 213 PIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred eEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 6655222 356789999999999999999877554
No 278
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.74 E-value=14 Score=38.55 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=75.4
Q ss_pred HHHHHHHCCCCEEEEccCcccc-----cCCCHHHHHHHHHHHHHHhCC-CcEEEEecC------CCCHHHHHHHHHHHHH
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGFA 148 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~-----~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg------~~st~~ai~lar~a~~ 148 (356)
-++..++.|++.+-+..++++. ..+|.+|-.+.+..+++.+.. ...|.++.- ..+.+-.++.++.+.+
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~ 169 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAE 169 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHh
Confidence 4566778899999888888764 457788888888888776543 334555333 2346778899999999
Q ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018443 149 VGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 185 (356)
Q Consensus 149 ~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilY 185 (356)
.|+|.+.+ +=..+..+++++.+.++.+.+. .|+-++
T Consensus 170 ~Gad~i~l-~DTvG~~~P~~v~~li~~l~~~~~v~i~~H 207 (524)
T PRK12344 170 AGADWVVL-CDTNGGTLPHEVAEIVAEVRAAPGVPLGIH 207 (524)
T ss_pred CCCCeEEE-ccCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99998764 3456677888999999988876 455443
No 279
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=85.64 E-value=28 Score=32.95 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEc---cCcccc---cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVG---GTTGEG---QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 144 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~---GstGE~---~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar 144 (356)
-.++.+...++++.|.+.||+-|=+. ++..++ ...+++| .++.+.+...++.++.+-+-... ..++..+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~ 89 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDE---FLRRLLGDSKGNTKIAVMVDYGN--DDIDLLE 89 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHH---HHHHHHhhhccCCEEEEEECCCC--CCHHHHH
Confidence 46888999999999999999998543 222221 2233322 34444443333456555443221 2356677
Q ss_pred HHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh----cC-CCEEEEeecCch
Q 018443 145 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA----QS-PNLAGVKECVGN 218 (356)
Q Consensus 145 ~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La----~~-pnivGiK~s~~d 218 (356)
.+.+.|+|.+-+..|- ..-+.+.+..+.+.+. ..+. .+.-..++ .+++.+.+++ +. +..+.++|+.|-
T Consensus 90 ~a~~~gv~~iri~~~~---~~~~~~~~~i~~ak~~G~~v~-~~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~ 163 (266)
T cd07944 90 PASGSVVDMIRVAFHK---HEFDEALPLIKAIKEKGYEVF-FNLMAISG--YSDEELLELLELVNEIKPDVFYIVDSFGS 163 (266)
T ss_pred HHhcCCcCEEEEeccc---ccHHHHHHHHHHHHHCCCeEE-EEEEeecC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 7888999998776433 2456666666666555 3333 33222223 5666665554 33 578889999985
No 280
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.62 E-value=29 Score=33.30 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHh-CCCcEEEEecCCCCHHHHHHHHHHHHHc---CCCEEEE--cCCCCC-----CCCHHHHHHHHHH
Q 018443 107 WDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAV---GMHAALH--INPYYG-----KTSLEGLISHFDS 175 (356)
Q Consensus 107 ~eEr~~li~~~~~~~-~grvpVi~gvg~~st~~ai~lar~a~~~---Gadavlv--~pP~y~-----~~s~~~l~~y~~~ 175 (356)
.++..+.++...+.. ....||++++++. .++-++.++..++. |+|++-+ ..|... ..+.+.+.+..++
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~ 151 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTA 151 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHH
Confidence 455555554433322 1357999999988 99999999998886 6999865 334431 1256778888888
Q ss_pred HHhc--CCeEEEeCC
Q 018443 176 VLSM--GPTIIYNVP 188 (356)
Q Consensus 176 va~~--~PiilYn~P 188 (356)
+.+. .||++==-|
T Consensus 152 v~~~~~iPv~vKl~p 166 (294)
T cd04741 152 VKAAYSIPVGVKTPP 166 (294)
T ss_pred HHHhcCCCEEEEeCC
Confidence 8776 688876555
No 281
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=85.61 E-value=6.1 Score=38.50 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCc-EEEEecCCCCHHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grv-pVi~gvg~~st~~ai~lar~a~~ 148 (356)
...++.+.+.++++.+.+.|+..|.+.| ||- .| ..+-.++++.+.+. .+ + .+.+.+.+.... +.++...+
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I~~tG--GEP-ll-r~dl~~li~~i~~~-~~-l~~i~itTNG~ll~---~~~~~L~~ 112 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKIRLTG--GEP-LV-RRGCDQLVARLGKL-PG-LEELSLTTNGSRLA---RFAAELAD 112 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEEEC--cCC-Cc-cccHHHHHHHHHhC-CC-CceEEEEeChhHHH---HHHHHHHH
Confidence 4579999999999999999999999877 994 44 34555666555432 22 2 343344433232 56777888
Q ss_pred cCCCEEEEcCCC-----CC----CCCHHHHHHHHHHHHhc
Q 018443 149 VGMHAALHINPY-----YG----KTSLEGLISHFDSVLSM 179 (356)
Q Consensus 149 ~Gadavlv~pP~-----y~----~~s~~~l~~y~~~va~~ 179 (356)
+|.+.+-+.--. |. ..+-+.+++-.+.+.+.
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~ 152 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA 152 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc
Confidence 999988664422 11 12345666666666555
No 282
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=85.57 E-value=14 Score=39.17 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=75.1
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
+-.|..+-..--|+-+-..+.+-+.++++.+.+.|++.|.+.-++| .|++++-.++++.+.+..+ +||-+++ ++
T Consensus 133 k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG---~l~P~~v~~lv~alk~~~~--ipi~~H~-Hn 206 (596)
T PRK14042 133 KSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAG---LLTPTVTVELYAGLKQATG--LPVHLHS-HS 206 (596)
T ss_pred HHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccc---CCCHHHHHHHHHHHHhhcC--CEEEEEe-CC
Confidence 3445443333334444578999999999999999999999999999 4799999999999888763 7876665 44
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 135 STREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~p 158 (356)
+.--++.-+-.|.++|||.+=..-
T Consensus 207 t~Gla~an~laAieaGad~iD~ai 230 (596)
T PRK14042 207 TSGLASICHYEAVLAGCNHIDTAI 230 (596)
T ss_pred CCCcHHHHHHHHHHhCCCEEEecc
Confidence 566778888889999999885443
No 283
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=85.49 E-value=22 Score=40.94 Aligned_cols=144 Identities=11% Similarity=0.042 Sum_probs=88.1
Q ss_pred ceeEeeecccCC------------CCCCCHHHH----HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHH-
Q 018443 58 RLITAIKTPYLP------------DGRFDLEAY----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC- 120 (356)
Q Consensus 58 Gvi~al~TPf~~------------dg~ID~~~l----~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~- 120 (356)
..++..+-|... -+.++++.+ +..++.|++.|||.|++ -| ..+..|-+..+..+.+.
T Consensus 130 ~~VAGSIGP~g~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllli-ET-----i~d~~EakAal~a~~~~~ 203 (1229)
T PRK09490 130 RFVAGVLGPTNRTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILI-ET-----IFDTLNAKAAIFAVEEVF 203 (1229)
T ss_pred eEEEEecCCCCcccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEE-ee-----eCCHHHHHHHHHHHHHHH
Confidence 356666666663 124666654 45588888999999976 22 23566666666665543
Q ss_pred --hCCCcEEEEecCCCC------HHHHHHH-HHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCC
Q 018443 121 --FGASVKVIGNTGSNS------TREAIHA-TEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPS 189 (356)
Q Consensus 121 --~~grvpVi~gvg~~s------t~~ai~l-ar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~ 189 (356)
.+.++||++..+-.. .-+.++. +...+..|++++-+=. ...++.+..+.+.+++. .|+++|-|-+
T Consensus 204 ~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avGlNC----s~GP~~m~~~l~~l~~~~~~pi~vyPNAG 279 (1229)
T PRK09490 204 EELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKPLSIGLNC----ALGADELRPYVEELSRIADTYVSAHPNAG 279 (1229)
T ss_pred hhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCCCEEEEcC----CCcHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 234789988654210 1112222 2233467888776532 12478999999999865 6999998743
Q ss_pred C----CCCCCCHHHHHHHh----cCC--CEEE
Q 018443 190 R----TGQDIPPRVIHTMA----QSP--NLAG 211 (356)
Q Consensus 190 ~----tG~~ls~~~l~~La----~~p--nivG 211 (356)
. ..++.+|+.+.+.. +.. ||+|
T Consensus 280 lP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIG 311 (1229)
T PRK09490 280 LPNAFGEYDETPEEMAAQIGEFAESGFLNIVG 311 (1229)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEE
Confidence 2 25678887766554 334 6665
No 284
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=85.40 E-value=7.3 Score=36.52 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC-CCEEEE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH 156 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G-adavlv 156 (356)
...+++.+.+.|++.+.+.+-+.++..=.. -.++++.+.+.+ ++|||+.=|-.+.++..++. +.| +|++++
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~--~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~----~~g~~dgv~~ 228 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGY--DLELTKAVSEAV--KIPVIASGGAGKPEHFYEAF----TKGKADAALA 228 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCC--CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHH----HcCCcceeeE
Confidence 456777788999999999665544331111 134566666654 58998876666666666443 335 999988
Q ss_pred cCCCC-CCCCHHHHHHHHH
Q 018443 157 INPYY-GKTSLEGLISHFD 174 (356)
Q Consensus 157 ~pP~y-~~~s~~~l~~y~~ 174 (356)
..=.| ...+.+++.++.+
T Consensus 229 g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 229 ASVFHYREITIGEVKEYLA 247 (254)
T ss_pred hHHHhCCCCCHHHHHHHHH
Confidence 76655 4567777776655
No 285
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=85.28 E-value=7.7 Score=36.74 Aligned_cols=95 Identities=19% Similarity=0.123 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
-|.+.+.++++.+.+.|++.+.+.-|+| .+++++-.++++.+.+..+ +|+-++ .+++..-++.-+..|.++|++
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~~~~~~~~~~~--~~i~~H-~Hn~~Gla~an~~~a~~aG~~ 211 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTVG---IATPRQVYELVRTLRGVVS--CDIEFH-GHNDTGCAIANAYAALEAGAT 211 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCC---CCCHHHHHHHHHHHHHhcC--CeEEEE-ECCCCChHHHHHHHHHHhCCC
Confidence 4688899999999999999999999999 7899999999988887664 666444 466788889999999999999
Q ss_pred EEEEcCCC----CCCCCHHHHHHHH
Q 018443 153 AALHINPY----YGKTSLEGLISHF 173 (356)
Q Consensus 153 avlv~pP~----y~~~s~~~l~~y~ 173 (356)
.+=..-=- .+.+.-++++.+.
T Consensus 212 ~vd~s~~GlGeraGn~~~e~~~~~l 236 (262)
T cd07948 212 HIDTTVLGIGERNGITPLGGLIARM 236 (262)
T ss_pred EEEEeccccccccCCccHHHHHHHH
Confidence 77554322 2234556666555
No 286
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=85.15 E-value=39 Score=32.90 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcE-EEEecC---CCCHHHHHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK-VIGNTG---SNSTREAIHATEQ 145 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~-Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvp-Vi~gvg---~~st~~ai~lar~ 145 (356)
+.++.+.+.+.++++.+. |+..+++.| ||-..++.+.-.++++.+.+. +. +. +=.++. .+...-+-++++.
T Consensus 117 ~~l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i-~~-v~~iri~Tr~~v~~p~rit~ell~~ 192 (321)
T TIGR03822 117 GVLSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI-DH-VKIVRFHTRVPVADPARVTPALIAA 192 (321)
T ss_pred CcCCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC-CC-ccEEEEeCCCcccChhhcCHHHHHH
Confidence 567889999999998865 899988877 899999888888888877652 21 21 222321 1223334466667
Q ss_pred HHHcCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018443 146 GFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~~-~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La 204 (356)
..+.|..-.+.+-=.... .+ ++..+-.+.+.++ .++.... .-..|++-+.+.+.+|.
T Consensus 193 L~~~g~~v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~-vLl~gvNd~~~~l~~l~ 251 (321)
T TIGR03822 193 LKTSGKTVYVALHANHARELT-AEARAACARLIDAGIPMVSQS-VLLRGVNDDPETLAALM 251 (321)
T ss_pred HHHcCCcEEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEe-eEeCCCCCCHHHHHHHH
Confidence 777774422222111111 12 4455555555555 3443332 22347777777777766
No 287
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=85.12 E-value=24 Score=32.90 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccC----------cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCC-CHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREA 139 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~Gs----------tGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~-st~~a 139 (356)
+.-|.+.+.+.++.+ +.++++|=+|-+ .|+...-..+.-.++++.+.+ .++||.+=+... ...++
T Consensus 75 ~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~---~~~PVsvKiR~~~~~~~~ 150 (231)
T TIGR00736 75 RFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE---LNKPIFVKIRGNCIPLDE 150 (231)
T ss_pred ecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc---CCCcEEEEeCCCCCcchH
Confidence 456888888888886 558999987654 455555566666666666662 367988866543 34578
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 018443 140 IHATEQGFAVGMHAALHI 157 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~ 157 (356)
+++++.+++.|+|++.+-
T Consensus 151 ~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVD 168 (231)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999773
No 288
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=84.82 E-value=41 Score=32.82 Aligned_cols=126 Identities=14% Similarity=0.072 Sum_probs=71.2
Q ss_pred HHHHHHHHCCCCEEEEccCcccc-c------------------------CCCHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEG-Q------------------------LMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~-~------------------------~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~ 134 (356)
+.++++.+.|..++++ +|..+- . +...++..+-+ .+....+.|++++++.+
T Consensus 63 ~~~~~~~~~G~Gavv~-ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l---~~~~~~~~plivsi~g~ 138 (327)
T cd04738 63 EAIDALLALGFGFVEV-GTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRL---KKRRPRGGPLGVNIGKN 138 (327)
T ss_pred HHHHHHHHCCCcEEEE-eccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHH---HHhccCCCeEEEEEeCC
Confidence 5566667889877754 555442 1 12233333333 33222468999999877
Q ss_pred C-------HHHHHHHHHHHHHcCCCEEEE--cCCCCCC----CCHHHHHHHHHHHHhc-------CCeEEEeCCCCCCCC
Q 018443 135 S-------TREAIHATEQGFAVGMHAALH--INPYYGK----TSLEGLISHFDSVLSM-------GPTIIYNVPSRTGQD 194 (356)
Q Consensus 135 s-------t~~ai~lar~a~~~Gadavlv--~pP~y~~----~s~~~l~~y~~~va~~-------~PiilYn~P~~tG~~ 194 (356)
+ .+|-.+.++.+.+ ++|++-+ ..|.+.. ...+.+.+..+++.+. .||++==.| .
T Consensus 139 ~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~-----~ 212 (327)
T cd04738 139 KDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAP-----D 212 (327)
T ss_pred CCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCC-----C
Confidence 5 5677777777665 4899876 5565421 2446666777777553 476654433 2
Q ss_pred CCHHHHHHHh---cCCCEEEEeec
Q 018443 195 IPPRVIHTMA---QSPNLAGVKEC 215 (356)
Q Consensus 195 ls~~~l~~La---~~pnivGiK~s 215 (356)
++.+.+.+++ +--++-||+.+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE
Confidence 3333333443 23456666644
No 289
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.68 E-value=19 Score=33.59 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=67.7
Q ss_pred HCCCCEEEEccCccc-------ccCCCHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 87 VNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGN--TGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 87 ~~Gv~Gl~v~GstGE-------~~~Lt~eEr~~li~~~~~~~~grvpVi~g--vg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
+.|.+.+++.|+..- .-.+|.+|....++.+...+ .+||++- .|..+..++.+.++...+.|++++.+-
T Consensus 27 ~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iE 104 (243)
T cd00377 27 RAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIE 104 (243)
T ss_pred HcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 459999998775432 34678899998888888766 6798884 344477889999999999999999982
Q ss_pred CCC----------CCCCCHHHHHHHHHHHHhc
Q 018443 158 NPY----------YGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 158 pP~----------y~~~s~~~l~~y~~~va~~ 179 (356)
--. +...+.++..+-.+++.++
T Consensus 105 D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a 136 (243)
T cd00377 105 DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDA 136 (243)
T ss_pred cCCCCccccCCCCCeecCHHHHHHHHHHHHHH
Confidence 211 1234778888888888765
No 290
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=84.60 E-value=23 Score=32.12 Aligned_cols=126 Identities=11% Similarity=0.065 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.+-.--.-+.++.+++.|++-+.+=+|.=+-+ .|.+ ++++...+.. ..+++-+++ +|-++.|.++|+
T Consensus 47 ~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~---~li~~i~~~~---~l~MADist------~ee~~~A~~~G~ 113 (192)
T PF04131_consen 47 DVYITPTLKEVDALAEAGADIIALDATDRPRP-ETLE---ELIREIKEKY---QLVMADIST------LEEAINAAELGF 113 (192)
T ss_dssp S--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HH---HHHHHHHHCT---SEEEEE-SS------HHHHHHHHHTT-
T ss_pred CeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHH---HHHHHHHHhC---cEEeeecCC------HHHHHHHHHcCC
Confidence 34444456788999999999999988888877 4444 4555554433 788988864 566778999999
Q ss_pred CEEEEcCCCCCCCC--HHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc---CCCEEEEeecC
Q 018443 152 HAALHINPYYGKTS--LEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECV 216 (356)
Q Consensus 152 davlv~pP~y~~~s--~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~---~pnivGiK~s~ 216 (356)
|.|--+---|.+.+ +.-=++..+++.+. .|+|.= |.--+|+...+..+ +--|||=..+.
T Consensus 114 D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaE------Gri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 114 DIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAE------GRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEE------SS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeec------CCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 99998877665533 22235666677766 575532 55667888877765 34466644443
No 291
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=84.60 E-value=12 Score=34.12 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH-HHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEe
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEG-LISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 213 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~-l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK 213 (356)
+..++++.+++.|++.++++.=.-.. +..+ =.+.++++.+. .|++. + |---+++.+.++.+..++-|+=
T Consensus 147 ~~~e~~~~~~~~g~~~ii~~~~~~~g-~~~G~d~~~i~~l~~~~~ipvia-~-----GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 147 TAEDLAKRFEDAGVKAIIYTDISRDG-TLSGPNVEATRELAAAVPIPVIA-S-----GGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred CHHHHHHHHHhcCCCEEEEeeecCcC-CcCCCCHHHHHHHHHhCCCCEEE-e-----CCCCCHHHHHHHHHcCCccEEE
Confidence 34667777777777776665321100 0001 13444555554 35333 2 3334566677766655454443
No 292
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.53 E-value=42 Score=32.74 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=43.0
Q ss_pred CCcchhcccCCccccccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccc---------ccCCCHHHH
Q 018443 40 MRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE---------GQLMSWDEH 110 (356)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE---------~~~Lt~eEr 110 (356)
+....+|||+- .+|+.+-+.+||.+..+-+..+-+ ..+.| -|+++.|.+.= ...+..++.
T Consensus 7 ig~~~l~NRi~---------~~pm~~~~~~~g~~~~~~~~~y~~-rA~gg-~glii~~~~~v~~~~~~~~~~~~~~~d~~ 75 (336)
T cd02932 7 LRGVTLKNRIV---------VSPMCQYSAEDGVATDWHLVHYGS-RALGG-AGLVIVEATAVSPEGRITPGDLGLWNDEQ 75 (336)
T ss_pred ECCEEEeccCE---------EcccccCcCCCCCCCHHHHHHHHH-HHcCC-CcEEEEcceEECCCcCCCCCceeecCHHH
Confidence 34456677743 344433333577666554444444 23344 45555554321 123556677
Q ss_pred HHHHHHHHHHhC-CCcEEEEecCC
Q 018443 111 IMLIGHTVNCFG-ASVKVIGNTGS 133 (356)
Q Consensus 111 ~~li~~~~~~~~-grvpVi~gvg~ 133 (356)
..-++.+++.+. ...+++++..+
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~QL~H 99 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQLAH 99 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEccC
Confidence 777766666542 34567777644
No 293
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=84.39 E-value=8.2 Score=38.51 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~ 147 (356)
.|-.|.+-=++-++.+.+.+.+|+.+.| +.|| +.+|..++++.+........|. +.|+|. ..+. -.+.
T Consensus 185 qGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge----~~~~~~~iv~~~~~~lp~~kPryl~Gvg~--P~~i----~~~v 254 (368)
T TIGR00430 185 QGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGE----PKEDMLRILEHTAPLLPKDKPRYLMGVGT--PEDL----LNAI 254 (368)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCeeEeCCccCCC----CHHHHHHHHHHHHhhCCcccceeecCCCC--HHHH----HHHH
Confidence 3666777666678888899999999999 7787 5788999999998888776675 558874 4443 3456
Q ss_pred HcCCCEEEEcCCCC
Q 018443 148 AVGMHAALHINPYY 161 (356)
Q Consensus 148 ~~Gadavlv~pP~y 161 (356)
..|+|-+=..-|.-
T Consensus 255 ~~GvD~FD~~~ptr 268 (368)
T TIGR00430 255 RRGIDMFDCVMPTR 268 (368)
T ss_pred HcCCCEEEecCccc
Confidence 78999776655543
No 294
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.31 E-value=9.7 Score=38.34 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=70.5
Q ss_pred CceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCH
Q 018443 57 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 136 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st 136 (356)
.|.++--.+|. =+.+-+.++.+.+.+.|+|.|.+=-.+| .||+.+--++++...+.++ +||-+++-+++
T Consensus 142 q~~i~YT~sPv-----Ht~e~yv~~akel~~~g~DSIciKDmaG---lltP~~ayelVk~iK~~~~--~pv~lHtH~Ts- 210 (472)
T COG5016 142 QGTISYTTSPV-----HTLEYYVELAKELLEMGVDSICIKDMAG---LLTPYEAYELVKAIKKELP--VPVELHTHATS- 210 (472)
T ss_pred EEEEEeccCCc-----ccHHHHHHHHHHHHHcCCCEEEeecccc---cCChHHHHHHHHHHHHhcC--CeeEEeccccc-
Confidence 55566656663 4788999999999999999999988777 5899999999999998885 89988875543
Q ss_pred HHHHHHHHHHHHcCCCEE-EEcCCCC
Q 018443 137 REAIHATEQGFAVGMHAA-LHINPYY 161 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadav-lv~pP~y 161 (356)
--+..---.|.++|+|.+ ..+.|.-
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S 236 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLS 236 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhcccc
Confidence 222333345678999988 4445543
No 295
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=84.29 E-value=16 Score=36.00 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 133 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 133 ~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
..+.++.+++++.+.+.|+|.+-+.- .++..+++++.++++.+.+.
T Consensus 140 ~~~~e~l~~~a~~~~~~Ga~~i~i~D-T~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 140 MAPPEKLAEQAKLMESYGAQCVYVVD-SAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEeCC-CCCCCCHHHHHHHHHHHHHh
Confidence 33455556666666666666554432 34445556666666666544
No 296
>PRK10481 hypothetical protein; Provisional
Probab=84.22 E-value=34 Score=31.73 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=76.9
Q ss_pred EeeecccCCCCC---CCHHH----HHHHHHHHHHCCCCEEEEccCcccccCCCHHH-----HHHHHHHHHHHhCCCcEEE
Q 018443 61 TAIKTPYLPDGR---FDLEA----YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-----HIMLIGHTVNCFGASVKVI 128 (356)
Q Consensus 61 ~al~TPf~~dg~---ID~~~----l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eE-----r~~li~~~~~~~~grvpVi 128 (356)
..++|=+. ||+ +-.+. +.+.++.+-+.|++.++ ...||+|+.|...- =..++..++....+.-.
T Consensus 56 ~~lvtrL~-dG~~v~~s~~~v~~~lq~~i~~l~~~g~d~iv-l~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~r-- 131 (224)
T PRK10481 56 DVLVTRLN-DGQQVHVSKQKVERDLQSVIEVLDNQGYDVIL-LLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQ-- 131 (224)
T ss_pred ceeEEEec-CCCEEEEEHHHHHHHHHHHHHHHHhCCCCEEE-EEecCCCCCccccCccccCchhhHHHHHHHhcCCCe--
Confidence 34555554 553 44444 45555566668999996 57899998887621 22344555554433212
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018443 129 GNTGSNSTREAIHATEQGFAVGMHAALHI-NPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 187 (356)
Q Consensus 129 ~gvg~~st~~ai~lar~a~~~Gadavlv~-pP~y~~~s~~~l~~y~~~va~~-~PiilYn~ 187 (356)
+||-....++.-+..+.....|.+..+.. .|| . .+++.+.+.-+++.+. ..+++.+.
T Consensus 132 iGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy-~-~~~~~l~~aa~~L~~~gaD~Ivl~C 190 (224)
T PRK10481 132 VGVIVPVEEQLAQQAQKWQVLQKPPVFALASPY-H-GSEEELIDAGKELLDQGADVIVLDC 190 (224)
T ss_pred EEEEEeCHHHHHHHHHHHHhcCCceeEeecCCC-C-CCHHHHHHHHHHhhcCCCCEEEEeC
Confidence 24445556666777788888898866554 344 2 6777888888888765 67888873
No 297
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=84.22 E-value=20 Score=38.11 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCE
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gada 153 (356)
+.+-+.++++.+.+.|++.|.+.-|+|= |++++-.++++.+.+.+ ++|+=+++ +++.--++.-+-.|.++|||.
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lk~~~--~~pi~~H~-Hnt~GlA~An~laAieAGa~~ 226 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGL---LKPYAAYELVSRIKKRV--DVPLHLHC-HATTGLSTATLLKAIEAGIDG 226 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCchHHHHHHHHHHcCCCE
Confidence 6889999999999999999999999995 89999999999998877 47776665 567888889999999999999
Q ss_pred EEEcCC
Q 018443 154 ALHINP 159 (356)
Q Consensus 154 vlv~pP 159 (356)
+=..--
T Consensus 227 vD~ai~ 232 (593)
T PRK14040 227 VDTAIS 232 (593)
T ss_pred EEeccc
Confidence 865544
No 298
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=84.19 E-value=7.2 Score=40.48 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFA 148 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g~~st~~ai~lar~a~~ 148 (356)
.++.|.+-+.++++...+.|++-|.++-|+|= +++++-.++++.+.+.++..-.+.+++ .+++.--++.-+-.|.+
T Consensus 140 ~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~ 216 (494)
T TIGR00973 140 AGRTEIPFLARIVEAAINAGATTINIPDTVGY---ALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQ 216 (494)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHH
Confidence 45789999999999999999999999999985 789999999999988776532233444 56788889999999999
Q ss_pred cCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018443 149 VGMHAALHINPYYG----KTSLEGLISHFDS 175 (356)
Q Consensus 149 ~Gadavlv~pP~y~----~~s~~~l~~y~~~ 175 (356)
+||+.+-..-=-++ ..+-+++..+++.
T Consensus 217 aGa~~vd~tv~GlGERaGNa~le~vv~~L~~ 247 (494)
T TIGR00973 217 NGARQVECTINGIGERAGNAALEEVVMALKV 247 (494)
T ss_pred hCCCEEEEEeecccccccCccHHHHHHHHHH
Confidence 99998866644332 3455666666554
No 299
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=84.11 E-value=8.5 Score=35.58 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
+...++.+.+.|+..+++.--.-|+...-.+. ++++.+.+.+ ++|+|++=|-.+.++..++. +.|++++++-
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~--~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~----~~G~~gvivg 220 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTMQGPDL--ELLKQLAEAV--NIPVIASGGVRSLEDLRELK----KAGIDGVIVG 220 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTSSS--H--HHHHHHHHHH--SSEEEEESS--SHHHHHHHH----HTTECEEEES
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCcCCCCH--HHHHHHHHHc--CCCEEEecCCCCHHHHHHHH----HCCCcEEEEe
Confidence 55667778888999999998888887776665 6677777777 78999987777777766655 8999999886
Q ss_pred C
Q 018443 158 N 158 (356)
Q Consensus 158 p 158 (356)
.
T Consensus 221 ~ 221 (229)
T PF00977_consen 221 S 221 (229)
T ss_dssp H
T ss_pred h
Confidence 4
No 300
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.05 E-value=23 Score=31.46 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=61.3
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-vg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
..++.+.+.|++++.+-+.++ .++-.++++.+.+ ..+++++- .+..+..+..+ +...|+|.+.+.|
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~---~g~~~~v~~~~~~t~~e~~~----~~~~~~d~v~~~~ 134 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK---YGKEVQVDLIGVEDPEKRAK----LLKLGVDIVILHR 134 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH---cCCeEEEEEeCCCCHHHHHH----HHHCCCCEEEEcC
Confidence 346788899999999887653 2334455555443 23455542 45555555543 6678999888743
Q ss_pred CCCCCCC--HHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 159 PYYGKTS--LEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 159 P~y~~~s--~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
.+...+ .....+..+.+.+. ++.|-...-.++++.+.++.+.
T Consensus 135 -~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~GGI~~~~i~~~~~~ 178 (202)
T cd04726 135 -GIDAQAAGGWWPEDDLKKVKKL-----LGVKVAVAGGITPDTLPEFKKA 178 (202)
T ss_pred -cccccccCCCCCHHHHHHHHhh-----cCCCEEEECCcCHHHHHHHHhc
Confidence 331111 12234555555543 2333322235678999888754
No 301
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=83.96 E-value=7.2 Score=37.55 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=57.7
Q ss_pred ccCCCHHHHH----------HHHHHHHHHhCCCcEEE-EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH
Q 018443 102 GQLMSWDEHI----------MLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI 170 (356)
Q Consensus 102 ~~~Lt~eEr~----------~li~~~~~~~~grvpVi-~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~ 170 (356)
-..+|.+|.. ++++.+++. .++||+ +..|.-.+.+-+ +.+.++|+|++++..=.+...+++...
T Consensus 173 L~gyt~~~~~~~a~~~~~~~elL~ei~~~--~~iPVV~~AeGGI~TPeda---a~vme~GAdgVaVGSaI~ks~dP~~~a 247 (293)
T PRK04180 173 LTSMSEDELYTAAKELQAPYELVKEVAEL--GRLPVVNFAAGGIATPADA---ALMMQLGADGVFVGSGIFKSGDPEKRA 247 (293)
T ss_pred HhCCCHHHHHhhccccCCCHHHHHHHHHh--CCCCEEEEEeCCCCCHHHH---HHHHHhCCCEEEEcHHhhcCCCHHHHH
Confidence 4556666643 345555553 368998 566666343333 334458999999998777666777766
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-C-CCEEEEeecC
Q 018443 171 SHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-S-PNLAGVKECV 216 (356)
Q Consensus 171 ~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~-~-pnivGiK~s~ 216 (356)
+.|.+.... ||. |+.+.+.++ + .-.+|+-.+.
T Consensus 248 kafv~ai~~-----~~~---------~~~~~~~s~~~~~~m~g~~~~~ 281 (293)
T PRK04180 248 RAIVEATTH-----YDD---------PEVLAEVSKGLGEAMVGIDIDE 281 (293)
T ss_pred HHHHHHHHH-----cCC---------HHHHHHHHcccccccCCCcccc
Confidence 666655432 443 456666663 3 2455554443
No 302
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=83.85 E-value=31 Score=35.41 Aligned_cols=135 Identities=11% Similarity=0.055 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccC----CC--HHHHHHHHHHHHHHhCCCcEEE--------EecCCCCHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL----MS--WDEHIMLIGHTVNCFGASVKVI--------GNTGSNSTR 137 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~----Lt--~eEr~~li~~~~~~~~grvpVi--------~gvg~~st~ 137 (356)
.+..+.....++.+.+.|++.|=+.|.++ |.. ++ +.|+.+.+. +.. .++++. .|.....-+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggat-f~~~~~f~~e~p~e~l~~l~---~~~-~~~~l~~l~r~~N~~G~~~~pdd 96 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGAT-FDACLRFLNEDPWERLRKIR---KAV-KKTKLQMLLRGQNLLGYRNYADD 96 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcc-chhhhccCCCCHHHHHHHHH---HhC-CCCEEEEEeccccccccccCchh
Confidence 46778888999999999999997755432 222 33 455554443 333 234543 344333333
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC----CeEEEeCCCCCCCCCCHHHHHHHh----cC-CC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG----PTIIYNVPSRTGQDIPPRVIHTMA----QS-PN 208 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~----PiilYn~P~~tG~~ls~~~l~~La----~~-pn 208 (356)
-..+..+.|.+.|+|.+-+..+.-...+ +....+.+-+.. ..+-|-.. ...+++.+.+++ +. ..
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n---~~~~v~~ak~~G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad 169 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRN---LETAVKATKKAGGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGAD 169 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHH---HHHHHHHHHHcCCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCC
Confidence 3456778889999999877665332222 222222222222 12334331 124555555444 44 57
Q ss_pred EEEEeecCch
Q 018443 209 LAGVKECVGN 218 (356)
Q Consensus 209 ivGiK~s~~d 218 (356)
.+.+||+.|-
T Consensus 170 ~I~i~Dt~G~ 179 (448)
T PRK12331 170 SICIKDMAGI 179 (448)
T ss_pred EEEEcCCCCC
Confidence 8999999985
No 303
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=83.80 E-value=11 Score=31.61 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=61.8
Q ss_pred cccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CcccccCCC----HHHHHHHHHHHHHHhC---CCc
Q 018443 54 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMS----WDEHIMLIGHTVNCFG---ASV 125 (356)
Q Consensus 54 ~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~~~Lt----~eEr~~li~~~~~~~~---grv 125 (356)
|++.-.+-.+-+|. .|++|.+=. -.-+..|+||++|.| .-||.++-+ .++|.++++.+.++.+ .|+
T Consensus 24 mqyp~~vRiIrv~C--sGrvn~~fv----l~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv 97 (132)
T COG1908 24 MQYPPNVRIIRVMC--SGRVNPEFV----LKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERV 97 (132)
T ss_pred ccCCCceEEEEeec--cCccCHHHH----HHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceE
Confidence 44444444555565 489987643 334467999998888 789998776 8899999999999874 465
Q ss_pred EEE-EecC--CCCHHHHHHHHHHHHHcCCC
Q 018443 126 KVI-GNTG--SNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 126 pVi-~gvg--~~st~~ai~lar~a~~~Gad 152 (356)
.++ +.++ .-=++..-++.++.+++|..
T Consensus 98 ~~~wiSa~E~ekf~e~~~efv~~i~~lGpn 127 (132)
T COG1908 98 RVLWISAAEGEKFAETINEFVERIKELGPN 127 (132)
T ss_pred EEEEEehhhHHHHHHHHHHHHHHHHHhCCC
Confidence 543 2222 11234455667777788763
No 304
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=83.78 E-value=20 Score=32.06 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=61.9
Q ss_pred HHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 81 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 81 ~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.++.+.+.|++-+.+-+.++. ..-.++++.+.+ -.+++++++.+..+ ..+.++.+.+.|+|.+.+.|.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~------~~~~~~i~~~~~---~g~~~~~~~~~~~t--~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD------ATIKGAVKAAKK---HGKEVQVDLINVKD--KVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH------HHHHHHHHHHHH---cCCEEEEEecCCCC--hHHHHHHHHHcCCCEEEEcCCc
Confidence 577788999999988776542 222445555443 25788877533322 5566677788899988775433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 161 YGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 161 y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
-.......-.+..+++.+..|.+..- ..| .++++.+.++.+.
T Consensus 137 ~~~~~~~~~~~~i~~l~~~~~~~~i~---v~G-GI~~~n~~~~~~~ 178 (206)
T TIGR03128 137 DEQAKGQNPFEDLQTILKLVKEARVA---VAG-GINLDTIPDVIKL 178 (206)
T ss_pred CcccCCCCCHHHHHHHHHhcCCCcEE---EEC-CcCHHHHHHHHHc
Confidence 21111111123344444433321111 123 3588888888764
No 305
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=83.77 E-value=7.8 Score=40.30 Aligned_cols=101 Identities=20% Similarity=0.118 Sum_probs=78.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC--CcEEEEecCCCCHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g--rvpVi~gvg~~st~~ai~lar~a~ 147 (356)
.++.|.+-+.++++...+.|++.|.++-|+|= +++++-.++++.+.+.+++ ++++=++ ++++.--++.-+-.|.
T Consensus 233 a~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~---~tP~~v~~lV~~l~~~~~~~~~i~I~~H-~HND~GlAvANslaAi 308 (503)
T PLN03228 233 GGRSDKEFLCKILGEAIKAGATSVGIADTVGI---NMPHEFGELVTYVKANTPGIDDIVFSVH-CHNDLGLATANTIAGI 308 (503)
T ss_pred ccccCHHHHHHHHHHHHhcCCCEEEEecCCCC---CCHHHHHHHHHHHHHHhccccCceeEec-ccCCcChHHHHHHHHH
Confidence 46799999999999999999999999999984 7899999999888887654 3455444 4678888999999999
Q ss_pred HcCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018443 148 AVGMHAALHINPYYG----KTSLEGLISHFD 174 (356)
Q Consensus 148 ~~Gadavlv~pP~y~----~~s~~~l~~y~~ 174 (356)
++||+.+-..---.+ ...-++++.+.+
T Consensus 309 ~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~ 339 (503)
T PLN03228 309 CAGARQVEVTINGIGERSGNASLEEVVMALK 339 (503)
T ss_pred HhCCCEEEEeccccccccCCccHHHHHHHHH
Confidence 999999976543332 245566666554
No 306
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.76 E-value=40 Score=31.86 Aligned_cols=128 Identities=9% Similarity=-0.079 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccC---CCHHHHHHHHHHHHHHhCCC-------cEEEEecCCCC-------HHHH
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQL---MSWDEHIMLIGHTVNCFGAS-------VKVIGNTGSNS-------TREA 139 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~---Lt~eEr~~li~~~~~~~~gr-------vpVi~gvg~~s-------t~~a 139 (356)
.+.+-+++..+.|++++=+.-..--++. ++.++...+- .+.+..+-. .|...+.++.+ .+..
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~ 90 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFK-AALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVL 90 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHH-HHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHH
Confidence 5677888999999999866555544443 3344444443 333333211 12334555532 4445
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHH----HHHHHHHHhc---CCeEEEeCCCCCC-CCCCHHHHHHHhc
Q 018443 140 IHATEQGFAVGMHAALHINPYYGKTSLEGL----ISHFDSVLSM---GPTIIYNVPSRTG-QDIPPRVIHTMAQ 205 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP~y~~~s~~~l----~~y~~~va~~---~PiilYn~P~~tG-~~ls~~~l~~La~ 205 (356)
.+.++.|+.+||+.+.+.|.++...+.++. .+.++.+.+. .++.+=|.|.... ..-+++.+.+|.+
T Consensus 91 ~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~ 164 (274)
T TIGR00587 91 DEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIK 164 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHH
Confidence 666778889999988887766544333333 3334444432 4677888775422 2236888888873
No 307
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=83.76 E-value=21 Score=35.47 Aligned_cols=131 Identities=17% Similarity=0.089 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCccc----ccC-----------CCHHHHHHHHHHHHHHh----CCCc
Q 018443 72 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTGE----GQL-----------MSWDEHIMLIGHTVNCF----GASV 125 (356)
Q Consensus 72 ~ID~~~l~~~v~-------~li~~Gv~Gl~v~GstGE----~~~-----------Lt~eEr~~li~~~~~~~----~grv 125 (356)
.++.+.+++.++ +..++|.|||-+-|..|- |.+ =|.|-|.+++..+++.+ +.+
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~- 226 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD- 226 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-
Confidence 466666666655 455699999999877753 222 25678887766666654 333
Q ss_pred EEEEec----------CCCCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH-HHHHHHHHhc--CCeEEEeCCCCC
Q 018443 126 KVIGNT----------GSNSTRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGL-ISHFDSVLSM--GPTIIYNVPSRT 191 (356)
Q Consensus 126 pVi~gv----------g~~st~~-ai~lar~a~~~Gadavlv~pP~y~~~s~~~l-~~y~~~va~~--~PiilYn~P~~t 191 (356)
.|.+=+ ++.+.+| ++++++..++.|+|.+-+.-|.+... ... ..+.+.|.+. .||+. +
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~~~~~~~ik~~~~~pv~~------~ 298 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYSDAFREKVRARFHGVIIG------A 298 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--ccccHHHHHHHHHHCCCCEEE------e
Confidence 232211 2357788 89999999999999998887643210 111 2233445444 35553 2
Q ss_pred CCCCCHHHHHHHhcC--CCEEEE
Q 018443 192 GQDIPPRVIHTMAQS--PNLAGV 212 (356)
Q Consensus 192 G~~ls~~~l~~La~~--pnivGi 212 (356)
|. ++++..+++.+. -.+||+
T Consensus 299 G~-~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 299 GA-YTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CC-CCHHHHHHHHHcCCCCEEEE
Confidence 33 578888887743 345544
No 308
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=83.72 E-value=6 Score=37.54 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=38.5
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
-+...=.||.....=+.++++.-.+.+-+.|++.+-+=|.. |..++++..++ ..+||+.++|-
T Consensus 78 ~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~---------~~~~~i~~l~~---~GIPV~gHiGL 140 (261)
T PF02548_consen 78 AFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA---------EIAETIKALVD---AGIPVMGHIGL 140 (261)
T ss_dssp SEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG---------GGHHHHHHHHH---TT--EEEEEES
T ss_pred ceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch---------hHHHHHHHHHH---CCCcEEEEecC
Confidence 34445678976655555566655555555999999987754 45566665554 57999999864
No 309
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=83.60 E-value=8.6 Score=38.34 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~~ 148 (356)
|..+.+-=+.-++.+.+.+.+|+.+.| +.|| +.+|..++++.+.+..+...|. +.|+|+ ..+.+ .+..
T Consensus 185 Gg~~~dLR~~sa~~l~~~~~~GyaIGGl~~ge----~~~~~~~~l~~~~~~lP~~kPryl~Gvg~--P~~i~----~~v~ 254 (367)
T TIGR00449 185 GGTYPDLRRQSAEGLAELDFDGYAIGGVSVGE----PKRDMLRILEHVAPLLPKDKPRYLMGVGT--PELLA----NAVS 254 (367)
T ss_pred CCCCHHHHHHHHHHHhhCCCCeEEEeCcccCC----CHHHHHHHHHHHHhhCCcccceEecCCCC--HHHHH----HHHH
Confidence 555555333448888888999999999 7788 4499999999999888766675 558874 45444 4455
Q ss_pred cCCCEEEEcCCC
Q 018443 149 VGMHAALHINPY 160 (356)
Q Consensus 149 ~Gadavlv~pP~ 160 (356)
.|+|-+=..-|.
T Consensus 255 ~GvD~FD~~~pt 266 (367)
T TIGR00449 255 LGIDMFDCVAPT 266 (367)
T ss_pred cCCCEEeeCCcc
Confidence 899977665554
No 310
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=83.58 E-value=31 Score=31.20 Aligned_cols=131 Identities=13% Similarity=0.179 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE-----------ecCCCCHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-----------NTGSNSTREAIHA 142 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~-----------gvg~~st~~ai~l 142 (356)
|.+...+.++.+++.+++|+++.+... +.+.... +.+ .++||+. .|+....+-+-..
T Consensus 40 ~~~~~~~~~~~l~~~~vdgiii~~~~~-----~~~~~~~----~~~---~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~ 107 (268)
T cd01575 40 SPEREEELLRTLLSRRPAGLILTGLEH-----TERTRQL----LRA---AGIPVVEIMDLPPDPIDMAVGFSHAEAGRAM 107 (268)
T ss_pred CchhHHHHHHHHHHcCCCEEEEeCCCC-----CHHHHHH----HHh---cCCCEEEEecCCCCCCCCeEEeCcHHHHHHH
Confidence 445677888999999999999987542 2222122 111 2455543 2333445666777
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CC-eEEEeCCCCCCCCCCHHHHHHHh-cCCCEEEEeecC
Q 018443 143 TEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GP-TIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKECV 216 (356)
Q Consensus 143 ar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~P-iilYn~P~~tG~~ls~~~l~~La-~~pnivGiK~s~ 216 (356)
+++..+.|..-+.++.+.....+..+-.+-|++..+. .+ ...+..+......-.-+.+.++. ++|.+.||=-.+
T Consensus 108 ~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 185 (268)
T cd01575 108 ARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFCSN 185 (268)
T ss_pred HHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEECC
Confidence 7888888877776654433212223344445555443 22 22222221111111235566665 467666665443
No 311
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.55 E-value=5.7 Score=36.65 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
..+++.+.+.|++.+++.+.+-++.. +. .-.++++.+.+.+ .+||+++=|-.+.++..+ +.+.|++++++..
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g-~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~----~~~~Ga~gv~vgs 223 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EG-VNTEPVKELVDSV--DIPVIASGGVTTLDDLRA----LKEAGAAGVVVGS 223 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHH----HHHcCCCEEEEEH
Confidence 44555556889999998876544332 21 2334566666655 589998777666777554 3557999999987
Q ss_pred CCCCC-CCHHHHHHH
Q 018443 159 PYYGK-TSLEGLISH 172 (356)
Q Consensus 159 P~y~~-~s~~~l~~y 172 (356)
-.+.. .+-+++..+
T Consensus 224 a~~~~~~~~~~~~~~ 238 (241)
T PRK13585 224 ALYKGKFTLEEAIEA 238 (241)
T ss_pred HHhcCCcCHHHHHHH
Confidence 76643 344444443
No 312
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=83.54 E-value=22 Score=37.26 Aligned_cols=144 Identities=16% Similarity=0.107 Sum_probs=92.4
Q ss_pred eeEeeecccCCC-------------------CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHH--------H
Q 018443 59 LITAIKTPYLPD-------------------GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------I 111 (356)
Q Consensus 59 vi~al~TPf~~d-------------------g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr--------~ 111 (356)
++.|=.||.+=| |.++.+.+...++.+.. ++-.|.|-.|.+|=.+-+ +
T Consensus 37 illaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~-----~lepG~t~qfN~ifldpylw~~qig~k 111 (717)
T COG4981 37 ILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVS-----LLEPGRTAQFNSIFLDPYLWKLQIGGK 111 (717)
T ss_pred eeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHh-----ccCCCccceeeEEEechHHhhhcCChH
Confidence 777778886543 78999999999998864 233344444444332222 3
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018443 112 MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 188 (356)
Q Consensus 112 ~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P 188 (356)
+|+..++..-..--=|.++.|=.+.+++.|+++..-+-|...+.+-| .+-+++. -.-.||.+ .||+++=--
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKP-----GtIeqI~-svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKP-----GTIEQIR-SVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecC-----CcHHHHH-HHHHHHhcCCCCceEEEEec
Confidence 46665554321111266778888999999999988777775554322 3545543 34556666 599999877
Q ss_pred CCCCCCCCH--------HHHHHHhcCCCEEEEe
Q 018443 189 SRTGQDIPP--------RVIHTMAQSPNLAGVK 213 (356)
Q Consensus 189 ~~tG~~ls~--------~~l~~La~~pnivGiK 213 (356)
++.|-.=|. .++.+|-.++||+=+-
T Consensus 186 GraGGHHSweDld~llL~tYs~lR~~~NIvl~v 218 (717)
T COG4981 186 GRAGGHHSWEDLDDLLLATYSELRSRDNIVLCV 218 (717)
T ss_pred CccCCccchhhcccHHHHHHHHHhcCCCEEEEe
Confidence 777665443 4556667799998554
No 313
>PLN02535 glycolate oxidase
Probab=83.50 E-value=41 Score=33.59 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc--------------------------------------c------ccCCCHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTG--------------------------------------E------GQLMSWD 108 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstG--------------------------------------E------~~~Lt~e 108 (356)
=|.+-.++++++-.++|+.+|++.--+- + -..+|++
T Consensus 134 ~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 134 KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 3567788888888888888887732220 0 1245554
Q ss_pred HHHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 109 EHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 109 Er~~li~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
.- +.+.+.. ++||++ ||. +.++ ++.+.++|+|+|.+..-
T Consensus 214 ~i----~~lr~~~--~~PvivKgV~--~~~d----A~~a~~~GvD~I~vsn~ 253 (364)
T PLN02535 214 DI----EWLRSIT--NLPILIKGVL--TRED----AIKAVEVGVAGIIVSNH 253 (364)
T ss_pred HH----HHHHhcc--CCCEEEecCC--CHHH----HHHHHhcCCCEEEEeCC
Confidence 42 2233332 578877 563 3444 77888999999988753
No 314
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=83.50 E-value=78 Score=36.56 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=85.5
Q ss_pred ceeEeeecccCC---CC---------CCCHH----HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh
Q 018443 58 RLITAIKTPYLP---DG---------RFDLE----AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF 121 (356)
Q Consensus 58 Gvi~al~TPf~~---dg---------~ID~~----~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~ 121 (356)
..++..+-|... .| .++++ .+...++.+++.|||.|++ -| ..+..|-+..+..+.+..
T Consensus 114 ~~VAGsIGP~g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~ili-ET-----i~d~~EakAal~a~~~~~ 187 (1178)
T TIGR02082 114 RFVAGSMGPTNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLI-ET-----CFDTLNAKAALFAAETVF 187 (1178)
T ss_pred eEEEEEeCCCCCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEE-ec-----cCCHHHHHHHHHHHHHHH
Confidence 456666666653 11 35554 4566688889999999976 22 235667777776666543
Q ss_pred ---CCCcEEEEe-cC---------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEe
Q 018443 122 ---GASVKVIGN-TG---------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYN 186 (356)
Q Consensus 122 ---~grvpVi~g-vg---------~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn 186 (356)
+.++||++. +. +.+.++++... +..|++++-+=. ...++.+..+.+.++.. .|+++|-
T Consensus 188 ~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l---~~~~~~avGlNC----s~gP~~m~~~l~~l~~~~~~pi~vyP 260 (1178)
T TIGR02082 188 EEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSL---EHAGIDMIGLNC----ALGPDEMRPHLKHLSEHAEAYVSCHP 260 (1178)
T ss_pred hhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHH---hcCCCCEEEeCC----CCCHHHHHHHHHHHHHhcCceEEEEe
Confidence 347899887 21 23444555443 467888776532 12478999999999876 6999997
Q ss_pred CCCC----CCCCCCHHHHHHHh
Q 018443 187 VPSR----TGQDIPPRVIHTMA 204 (356)
Q Consensus 187 ~P~~----tG~~ls~~~l~~La 204 (356)
|-+. ..++.+|+.+.+..
T Consensus 261 NAGlP~~~~~yd~~p~~~a~~~ 282 (1178)
T TIGR02082 261 NAGLPNAFGEYDLTPDELAKAL 282 (1178)
T ss_pred CCCCCCCCCcccCCHHHHHHHH
Confidence 6321 24567787655543
No 315
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=83.46 E-value=12 Score=35.47 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=53.7
Q ss_pred CceeEeeecccCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCcccc--cCCCH-HHHHHHHHHHHHHhCC--CcEEEEe
Q 018443 57 LRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG--QLMSW-DEHIMLIGHTVNCFGA--SVKVIGN 130 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~-ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~--~~Lt~-eEr~~li~~~~~~~~g--rvpVi~g 130 (356)
.||+-..+=-|.+.|. .|++...+++..+++.|++-|=++|..... ...+. +|..++. .+++.... ++|| .
T Consensus 4 mgIlN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~-~~v~~i~~~~~~pl--S 80 (257)
T cd00739 4 MGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVI-PVLEALRGELDVLI--S 80 (257)
T ss_pred EEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCcE--E
Confidence 4554433333776665 899999999999999999999888633321 22344 4444443 33443333 4454 4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 131 TGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 131 vg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
+-+.+.+. ++.|-+.|++-+--+
T Consensus 81 IDT~~~~v----~e~al~~G~~iINdi 103 (257)
T cd00739 81 VDTFRAEV----ARAALEAGADIINDV 103 (257)
T ss_pred EeCCCHHH----HHHHHHhCCCEEEeC
Confidence 44433322 333444477655443
No 316
>PRK04302 triosephosphate isomerase; Provisional
Probab=83.42 E-value=25 Score=32.15 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
++.+.+.|++|+++.-+ | ..+..+|-.++++.+.+. .+.+|+.++. . +.++.+.+.|.|.+-+.|
T Consensus 78 ~~~l~~~G~~~vii~~s--e-r~~~~~e~~~~v~~a~~~---Gl~~I~~v~~--~----~~~~~~~~~~~~~I~~~p 142 (223)
T PRK04302 78 PEAVKDAGAVGTLINHS--E-RRLTLADIEAVVERAKKL---GLESVVCVNN--P----ETSAAAAALGPDYVAVEP 142 (223)
T ss_pred HHHHHHcCCCEEEEecc--c-cccCHHHHHHHHHHHHHC---CCeEEEEcCC--H----HHHHHHhcCCCCEEEEeC
Confidence 55566677777765332 2 115555655555554442 3344454443 1 223334445555554444
No 317
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=83.37 E-value=27 Score=33.77 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHh---CCCcEEEEecCC---------CCHHHHHHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGS---------NSTREAIHAT 143 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~---~grvpVi~gvg~---------~st~~ai~la 143 (356)
++++..++-|++.|+|++++ |- ..+..|-+..+..+.+.. +-++|||+..+- .++++ ..
T Consensus 143 ~ay~eq~~~Li~gG~D~iLi-----ET-~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a---~~ 213 (311)
T COG0646 143 EAYREQVEGLIDGGADLILI-----ET-IFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEA---FL 213 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEE-----eh-hccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHH---HH
Confidence 45677888899999999987 32 234555555555555543 447999886532 12333 33
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC---CCCC----CCCCCHHHHHH
Q 018443 144 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV---PSRT----GQDIPPRVIHT 202 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~---P~~t----G~~ls~~~l~~ 202 (356)
...+.+|+|.+=+=. ...++++..|++.+++. ..|..|-| |..- .++.+|+.++.
T Consensus 214 ~~l~~~~~~~vGlNC----a~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~ 277 (311)
T COG0646 214 NSLEHLGPDAVGLNC----ALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAE 277 (311)
T ss_pred HHhhccCCcEEeecc----ccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHH
Confidence 344556766654322 24568999999999986 46777765 3221 25666765544
No 318
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=83.24 E-value=22 Score=31.42 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=43.2
Q ss_pred EEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCH----------HHHHHHHHHHHHcCCCEEEEc---CC
Q 018443 93 MIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST----------REAIHATEQGFAVGMHAALHI---NP 159 (356)
Q Consensus 93 l~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st----------~~ai~lar~a~~~Gadavlv~---pP 159 (356)
++-.|-+|+... .-.+-++..+...+.+ -|++.+|.|+. +..-++.+.+++.|++-+++. ||
T Consensus 46 v~N~Gi~G~tt~----~~~~rl~~~l~~~~pd-~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P~ 120 (191)
T PRK10528 46 VVNASISGDTSQ----QGLARLPALLKQHQPR-WVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLPA 120 (191)
T ss_pred EEecCcCcccHH----HHHHHHHHHHHhcCCC-EEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 666677776332 2222222333322333 35555555553 333455666677788877763 34
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 018443 160 YYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 160 ~y~~~s~~~l~~y~~~va~~ 179 (356)
.|.....+.+.+.++++|++
T Consensus 121 ~~~~~~~~~~~~~~~~~a~~ 140 (191)
T PRK10528 121 NYGRRYNEAFSAIYPKLAKE 140 (191)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 44333335566667777776
No 319
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=83.21 E-value=37 Score=32.92 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCC------------------------------HHHHHHHHHHHHHcCCCEEEEcC
Q 018443 109 EHIMLIGHTVNCFGASVKVIGNTGSNS------------------------------TREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 109 Er~~li~~~~~~~~grvpVi~gvg~~s------------------------------t~~ai~lar~a~~~Gadavlv~p 158 (356)
+-.+.++.+.+..++++||+..+++.= ++-.++.++...++|||++.+.-
T Consensus 122 ~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d 201 (339)
T PRK06252 122 TVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIAD 201 (339)
T ss_pred HHHHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 334445555555555667776666541 33345566666677777777776
Q ss_pred CCCC--CCCHHHHH----HHHHHHHhc
Q 018443 159 PYYG--KTSLEGLI----SHFDSVLSM 179 (356)
Q Consensus 159 P~y~--~~s~~~l~----~y~~~va~~ 179 (356)
|.-. -.|++... .|++.+.+.
T Consensus 202 ~~a~~~~lsp~~f~ef~~p~~~~i~~~ 228 (339)
T PRK06252 202 PSASPELLGPKMFEEFVLPYLNKIIDE 228 (339)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHHH
Confidence 6432 23444433 344555554
No 320
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=83.20 E-value=48 Score=33.14 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccc-----------------------------------------------ccCCC
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGE-----------------------------------------------GQLMS 106 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE-----------------------------------------------~~~Lt 106 (356)
|.+..++++++-.++|+.++++.--+-- -.++|
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 212 (367)
T PLN02493 133 NRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLS 212 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCC
Confidence 6788888888888888888877211000 12455
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 107 WDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 107 ~eEr~~li~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
+++- +...+.. ++|||+ ||.+ .+-++.|.++|+|+|.+..
T Consensus 213 W~di----~wlr~~~--~~PiivKgV~~------~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 213 WKDV----QWLQTIT--KLPILVKGVLT------GEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred HHHH----HHHHhcc--CCCEEeecCCC------HHHHHHHHHcCCCEEEECC
Confidence 5442 2223333 578887 7753 5667788999999999875
No 321
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=83.15 E-value=4.7 Score=36.22 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-----------cCCCCHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-----------TGSNSTREAIH 141 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-----------vg~~st~~ai~ 141 (356)
-|.+.....++.+++.|++|+++.+...+.. + ++.+. ..++||+.- ++.+..+..-.
T Consensus 39 ~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~------~---~~~~~---~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~ 106 (264)
T cd06267 39 EDPEKEREALELLLSRRVDGIILAPSRLDDE------L---LEELA---ALGIPVVLVDRPLDGLGVDSVGIDNRAGAYL 106 (264)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEecCCcchH------H---HHHHH---HcCCCEEEecccccCCCCCEEeeccHHHHHH
Confidence 4567788889999999999999887765421 1 22221 234565432 22334444555
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-Ce-EEEeCCCCCCCCCCHHHHHHHh-cCCCEEEEeec
Q 018443 142 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PT-IIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKEC 215 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~-Pi-ilYn~P~~tG~~ls~~~l~~La-~~pnivGiK~s 215 (356)
.+++..+.|..-+.++.+.-.......-.+-|++..+. . ++ ..+..+......-....+.++. ++|++.++=-.
T Consensus 107 ~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 107 AVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEc
Confidence 55777778887777765433322233334444444433 2 22 1122221112222234455555 67776666544
No 322
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=83.04 E-value=27 Score=34.30 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHH----CCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 75 LEAYDDLVNMQIV----NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 75 ~~~l~~~v~~li~----~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
.+++.+.++...+ .+++.|++.| |+...|+.++..++++.+.+.......+-+-+...+. +-+.++..+++|
T Consensus 33 ~~~L~~Ei~~~~~~~~~~~v~~iyfGG--GTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~--~~e~l~~l~~~G 108 (350)
T PRK08446 33 MQALCLDLKFELEQFTDEKIESVFIGG--GTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSA--TKAWLKGMKNLG 108 (350)
T ss_pred HHHHHHHHHHHHhhccCCceeEEEECC--CccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCC--CHHHHHHHHHcC
Confidence 4555555554432 2688888776 5677899999999999988875444444333322222 236667777789
Q ss_pred CCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CC-e---EEEeCCCCC
Q 018443 151 MHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GP-T---IIYNVPSRT 191 (356)
Q Consensus 151 adavlv~pP~y~--------~-~s~~~l~~y~~~va~~-~P-i---ilYn~P~~t 191 (356)
++.+.+-.-.+. + .+.+++.+-++.+.+. .+ | ++|..|.-|
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 999887765442 2 4667777777777665 33 3 678888533
No 323
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=82.92 E-value=46 Score=31.95 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCC--CHHH----HHHHHHHHHhc-----CCeEEEe
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKT--SLEG----LISHFDSVLSM-----GPTIIYN 186 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~--s~~~----l~~y~~~va~~-----~PiilYn 186 (356)
++-.+++++...++|+|++.+.-|.-... |++. +..|++.+.+. .|++++.
T Consensus 167 ~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~ 228 (330)
T cd03465 167 TEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEE
Confidence 45556666766677777777777654332 4433 34444555543 2555554
No 324
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=82.89 E-value=15 Score=35.95 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=57.9
Q ss_pred HHHHHHCCCCEEEE-ccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 82 VNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 82 v~~li~~Gv~Gl~v-~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.+.+.+.|+..+.. ..--|-+..++..|..+ ..++. .++||+++.|=.+.++ +.+|.++|+||+++-.-.
T Consensus 211 a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~---~~~e~--~~vpVivdAGIg~~sd----a~~AmelGadgVL~nSaI 281 (326)
T PRK11840 211 AKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIR---LIVEG--ATVPVLVDAGVGTASD----AAVAMELGCDGVLMNTAI 281 (326)
T ss_pred HHHHHhcCCEEEeeccccccCCCCCCCHHHHH---HHHHc--CCCcEEEeCCCCCHHH----HHHHHHcCCCEEEEccee
Confidence 34455558877766 33455555676544444 44444 3699999887666655 467889999999998776
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 018443 161 YGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 161 y~~~s~~~l~~y~~~va~ 178 (356)
....++-.+-+-|+.-.+
T Consensus 282 a~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 282 AEAKNPVLMARAMKLAVE 299 (326)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 655667666666655433
No 325
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=82.82 E-value=29 Score=30.74 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
+.+...++.+++.|++.+.+- ...++..|..++++.+.+... .+++++++- ..+.|.+.|+|++
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR-----~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~----------~~~la~~~g~~Gv 77 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLR-----DKGSNTRERLALAEKLQELCRRYGVPFIVND----------RVDLALALGADGV 77 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEe-----cCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC----------HHHHHHHcCCCEE
Confidence 346677888899999987652 234688898888888887653 357888742 3456677899988
Q ss_pred EEc
Q 018443 155 LHI 157 (356)
Q Consensus 155 lv~ 157 (356)
-+.
T Consensus 78 Hl~ 80 (196)
T TIGR00693 78 HLG 80 (196)
T ss_pred ecC
Confidence 764
No 326
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=82.78 E-value=46 Score=32.71 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=8.7
Q ss_pred ccccccHHHHHHHHH
Q 018443 254 VTSNLVPGMMRELMF 268 (356)
Q Consensus 254 ~~~n~~P~~~~~l~~ 268 (356)
+.+|..-+.++...+
T Consensus 227 ~aGN~~~E~lv~~l~ 241 (333)
T TIGR03217 227 GAGNAPLEVFVAVLD 241 (333)
T ss_pred cccCccHHHHHHHHH
Confidence 455666666665544
No 327
>PRK00915 2-isopropylmalate synthase; Validated
Probab=82.69 E-value=9.1 Score=39.87 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=84.6
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCC--cEEEEecCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTGS 133 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~gr--vpVi~gvg~ 133 (356)
-.|.-+. +++-+ .++-|.+-+.+.++...+.|++.|.++-|.|- +++++-.++++.+.+.++++ +|+=++ .+
T Consensus 131 ~~g~~v~-f~~ed-~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H-~H 204 (513)
T PRK00915 131 SYTDDVE-FSAED-ATRTDLDFLCRVVEAAIDAGATTINIPDTVGY---TTPEEFGELIKTLRERVPNIDKAIISVH-CH 204 (513)
T ss_pred HCCCeEE-EEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCcccceEEEE-ec
Confidence 4555443 44432 35689999999999999999999999999996 58999999999998877543 454443 46
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDS 175 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~~ 175 (356)
++.--++.-+-.|.++||+.|-..---++ ..+-++++..++.
T Consensus 205 ND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~ 250 (513)
T PRK00915 205 NDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKT 250 (513)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHh
Confidence 78888999999999999999876654332 2445666555544
No 328
>PRK01060 endonuclease IV; Provisional
Probab=82.66 E-value=42 Score=31.37 Aligned_cols=126 Identities=12% Similarity=0.066 Sum_probs=70.3
Q ss_pred HHHHHHHHHHCCCCEEEEc-cCcccc--cCCCHHHHHHHHHHHHHHhCCC---c----EEEEecCCCC-------HHHHH
Q 018443 78 YDDLVNMQIVNGAEGMIVG-GTTGEG--QLMSWDEHIMLIGHTVNCFGAS---V----KVIGNTGSNS-------TREAI 140 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~-GstGE~--~~Lt~eEr~~li~~~~~~~~gr---v----pVi~gvg~~s-------t~~ai 140 (356)
+++.+++..+.|.+|+=+. +.-+.+ ..+|.++..++-+.+ +..+=+ + |.....++.. .+...
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 6778899999999999333 322322 256777766655444 333222 1 2223333332 33456
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCC-CCHH----HHHHHHHHHHhc---CCeEEEeCCCCC-CCCCCHHHHHHHh
Q 018443 141 HATEQGFAVGMHAALHINPYYGK-TSLE----GLISHFDSVLSM---GPTIIYNVPSRT-GQDIPPRVIHTMA 204 (356)
Q Consensus 141 ~lar~a~~~Gadavlv~pP~y~~-~s~~----~l~~y~~~va~~---~PiilYn~P~~t-G~~ls~~~l~~La 204 (356)
+.++.|+++|+..+.+.+..+.. ...+ .+.+.++++.+. +.+.+=|.|... ...-+++.+.++.
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~ 165 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARII 165 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 66677889999998887765432 2333 233344444332 456777766421 1123566777766
No 329
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.64 E-value=23 Score=35.86 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
..+.++.++++|+|-|++=.+.| ++.+ -.++++.+.+..+ +++||+|-.+ +.+.++++.++|||+|.+-
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g--~~~~---~~~~v~~ik~~~p-~~~vi~g~V~-----T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHG--HSTR---IIELVKKIKTKYP-NLDLIAGNIV-----TKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CChh---HHHHHHHHHhhCC-CCcEEEEecC-----CHHHHHHHHHcCCCEEEEC
Confidence 56788889999999998755553 3333 3455555555553 5678775443 2456677778999999864
Q ss_pred -CCCCC---------CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCC-----EEEEeecCch
Q 018443 158 -NPYYG---------KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPN-----LAGVKECVGN 218 (356)
Q Consensus 158 -pP~y~---------~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~--~pn-----ivGiK~s~~d 218 (356)
-|.-. ...+-..+....++++. .|||. --|+.-+-+..+.|+- .-- +.|-.++.++
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA-----dGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA-----DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCc
Confidence 23210 11233344445566554 57653 2466666677777762 222 3333444333
Q ss_pred hhHhhhhCCCeEEEecCcc
Q 018443 219 DRVEHYTGNGIVVWSGNDD 237 (356)
Q Consensus 219 ~~i~~~~~~~~~v~~G~d~ 237 (356)
. ....+..+..|-|...
T Consensus 298 ~--~~~~g~~~K~yrGmgS 314 (404)
T PRK06843 298 E--IIYNGKKFKSYVGMGS 314 (404)
T ss_pred E--EEECCEEEEEEeccch
Confidence 2 1122345666777644
No 330
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=82.60 E-value=6.2 Score=37.21 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=86.3
Q ss_pred EeeecccCCCC---CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHH
Q 018443 61 TAIKTPYLPDG---RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 137 (356)
Q Consensus 61 ~al~TPf~~dg---~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~ 137 (356)
-+++=|-..|. +-+++.+.+-++.+.+.|++|++++.-|-++ .+..+--++|++.+ +..|+..+=.-..+.
T Consensus 55 ~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg-~vD~~~~~~Li~~a-----~~~~vTFHRAfD~~~ 128 (248)
T PRK11572 55 HPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDG-HVDMPRMRKIMAAA-----GPLAVTFHRAFDMCA 128 (248)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-CcCHHHHHHHHHHh-----cCCceEEechhhccC
Confidence 45566644343 3466778888899999999999876666444 46666556665544 356888875444455
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La 204 (356)
+..+-.+...++|++.|+-. -..++-.+-.+..+++.+. ...+| . .|-.++++-+.+|.
T Consensus 129 d~~~al~~l~~lG~~rILTS---Gg~~~a~~g~~~L~~lv~~a~~~~I--m---~GgGV~~~Nv~~l~ 188 (248)
T PRK11572 129 NPLNALKQLADLGVARILTS---GQQQDAEQGLSLIMELIAASDGPII--M---AGAGVRLSNLHKFL 188 (248)
T ss_pred CHHHHHHHHHHcCCCEEECC---CCCCCHHHHHHHHHHHHHhcCCCEE--E---eCCCCCHHHHHHHH
Confidence 66667777888899999964 2344566667777777664 33221 2 35678899898885
No 331
>PRK08227 autoinducer 2 aldolase; Validated
Probab=82.57 E-value=33 Score=32.64 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018443 114 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 114 i~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~ 178 (356)
++.+++ +.++||++ |=...+.++.+++++.+.+.|+.++.+--=.|...++..+.+-+++|..
T Consensus 184 f~~vv~--a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh 247 (264)
T PRK08227 184 FERITA--GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVH 247 (264)
T ss_pred HHHHHH--cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHh
Confidence 444444 34678754 5444478999999999999999999999888888888888888877753
No 332
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=82.44 E-value=7.1 Score=35.70 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC-CCEEEEc
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALHI 157 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G-adavlv~ 157 (356)
..+++.+.+.|++.+++.+.+-+....-. -.++++.+.+.+ .+|||++=|-.+.++..++ .+.| +|++++-
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G~--d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~----~~~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSGP--NVEATRELAAAV--PIPVIASGGVSSLDDIKAL----KGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCCC--CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHH----HHcCCccEEEEE
Confidence 45677777889999988876655444331 235555555554 4899998777777775544 3456 9999998
Q ss_pred CCCC
Q 018443 158 NPYY 161 (356)
Q Consensus 158 pP~y 161 (356)
.-.|
T Consensus 221 ~a~~ 224 (233)
T PRK00748 221 RALY 224 (233)
T ss_pred HHHH
Confidence 7655
No 333
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.43 E-value=22 Score=37.86 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
..|.+-+.++++.+.+.|++.|.++-|+|- +++++-.++++.+.+.++ +|+=+++ +++.--++.-+-.|.++||
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~---~~P~~~~~lv~~lk~~~~--~pi~~H~-Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGL---LTPYAAYELVKALKEEVD--LPVQLHS-HCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCC---cCHHHHHHHHHHHHHhCC--CeEEEEE-cCCCCcHHHHHHHHHHhCC
Confidence 368999999999999999999999999996 789999999999988773 6766655 4567778888889999999
Q ss_pred CEEEEcC
Q 018443 152 HAALHIN 158 (356)
Q Consensus 152 davlv~p 158 (356)
|.+=..-
T Consensus 224 d~vD~ai 230 (592)
T PRK09282 224 DIIDTAI 230 (592)
T ss_pred CEEEeec
Confidence 9885443
No 334
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=82.41 E-value=20 Score=38.02 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
..|.+-+.++++.+.+.|++.|.+.-|+|= +++++-.++++.+.+.++ +|+=+++ +++.--++.-+-.|.++||
T Consensus 145 ~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~---~~P~~v~~lv~~lk~~~~--~pi~~H~-Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 145 VHTLETYLDLAEELLEMGVDSICIKDMAGI---LTPKAAYELVSALKKRFG--LPVHLHS-HATTGMAEMALLKAIEAGA 218 (582)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhCC--CceEEEe-cCCCCcHHHHHHHHHHhCC
Confidence 368999999999999999999999999995 799999999999888774 6765555 5567778888889999999
Q ss_pred CEEEEcCC
Q 018443 152 HAALHINP 159 (356)
Q Consensus 152 davlv~pP 159 (356)
|.+=..--
T Consensus 219 ~~vd~ai~ 226 (582)
T TIGR01108 219 DGIDTAIS 226 (582)
T ss_pred CEEEeccc
Confidence 98865543
No 335
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=82.40 E-value=56 Score=32.63 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-------------------------------c---------cccCCCHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTT-------------------------------G---------EGQLMSWDEHIML 113 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gst-------------------------------G---------E~~~Lt~eEr~~l 113 (356)
|.+..++++++-.++|+.+|++.--+ + ....+|++.
T Consensus 144 dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---- 219 (367)
T TIGR02708 144 DDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRD---- 219 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHH----
Confidence 56777899999999999998873211 0 113566744
Q ss_pred HHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 114 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 114 i~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
++.+++.+ ++||++ ||++ .+-++.+.++|+|+|.+..
T Consensus 220 i~~l~~~~--~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 220 IEEIAGYS--GLPVYVKGPQC------PEDADRALKAGASGIWVTN 257 (367)
T ss_pred HHHHHHhc--CCCEEEeCCCC------HHHHHHHHHcCcCEEEECC
Confidence 33344443 578887 6653 6778888999999998875
No 336
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=82.39 E-value=50 Score=32.02 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH----HHHHHHhc----C-Ce-EEEeCCCCCCCCCCHHHHHHHhc
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLIS----HFDSVLSM----G-PT-IIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~----y~~~va~~----~-Pi-ilYn~P~~tG~~ls~~~l~~La~ 205 (356)
++-.+++++...++|||++++.-|.....|++...+ |+++|.+. . .+ ++|.. . |. ...+..+.+
T Consensus 176 t~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g--~~---~~~~~~~~~ 249 (335)
T cd00717 176 TDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFA-K--GA---GGLLEDLAQ 249 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-C--CC---HHHHHHHHh
Confidence 444677888788899999998888555567666554 44666654 2 12 44432 1 22 256777877
Q ss_pred CC-CEEEE
Q 018443 206 SP-NLAGV 212 (356)
Q Consensus 206 ~p-nivGi 212 (356)
.+ ++.++
T Consensus 250 ~~~~~~s~ 257 (335)
T cd00717 250 LGADVVGL 257 (335)
T ss_pred cCCCEEEe
Confidence 64 45444
No 337
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.37 E-value=8.8 Score=37.09 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCC-------HHHHHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHH
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS-------WDEHIMLIGHTVNCFGASVKVIGNTGSNS-TREAIHA 142 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt-------~eEr~~li~~~~~~~~grvpVi~gvg~~s-t~~ai~l 142 (356)
+..+.+....+++.+.+.|++.|-+.+.+.+..... .....+.++.+.+.+ ++||+++ |... .++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~-Ggi~t~~~---- 295 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAV-GGIRDPEV---- 295 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEe-CCCCCHHH----
Confidence 447899999999999999999998877776544331 233445666666655 5788765 4443 333
Q ss_pred HHHHHHc-CCCEEEEcCCCCCCC
Q 018443 143 TEQGFAV-GMHAALHINPYYGKT 164 (356)
Q Consensus 143 ar~a~~~-Gadavlv~pP~y~~~ 164 (356)
++.+.+. |+|.|++.-|.+..|
T Consensus 296 a~~~l~~g~aD~V~igR~~ladP 318 (327)
T cd02803 296 AEEILAEGKADLVALGRALLADP 318 (327)
T ss_pred HHHHHHCCCCCeeeecHHHHhCc
Confidence 3344444 799999988877544
No 338
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=82.33 E-value=10 Score=33.93 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=43.3
Q ss_pred CCCCEEEE----ccCcccccCCCHHHHHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 88 NGAEGMIV----GGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 88 ~Gv~Gl~v----~GstGE~~~Lt~eEr~~li~~~~~~~~---grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
.+++.+++ .|+||+.+ .++.. +-++.+.+..+ ..+|++++=| -+. +.++.+.+.|+|++.+...+
T Consensus 125 ~~~d~i~~~~~~~g~tg~~~--~~~~~-~~i~~i~~~~~~~~~~~~i~v~GG-I~~----env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 125 PDVDLVLLMSVNPGFGGQKF--IPDTL-EKIREVRKMIDENGLSILIEVDGG-VND----DNARELAEAGADILVAGSAI 196 (210)
T ss_pred hhCCEEEEEEEcCCCCcccc--cHHHH-HHHHHHHHHHHhcCCCceEEEECC-cCH----HHHHHHHHcCCCEEEEChHH
Confidence 46787765 57788733 33322 23333334332 3367654323 333 33566668999999999988
Q ss_pred CCCCCHHHHH
Q 018443 161 YGKTSLEGLI 170 (356)
Q Consensus 161 y~~~s~~~l~ 170 (356)
|...+.++..
T Consensus 197 ~~~~d~~~~~ 206 (210)
T TIGR01163 197 FGADDYKEVI 206 (210)
T ss_pred hCCCCHHHHH
Confidence 8766654443
No 339
>PLN02540 methylenetetrahydrofolate reductase
Probab=82.27 E-value=34 Score=36.14 Aligned_cols=130 Identities=10% Similarity=0.193 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccC----ccccc---CCCHHHHHHHHHHHHHHhCCCcEE-EEec--C----------
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQ---LMSWDEHIMLIGHTVNCFGASVKV-IGNT--G---------- 132 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~Gs----tGE~~---~Lt~eEr~~li~~~~~~~~grvpV-i~gv--g---------- 132 (356)
.+.+.+...++.+.+.|++.|+++.. .|+.+ .-..+.-.+|++.+.+..+...-+ ++|- +
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~ 149 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGL 149 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccc
Confidence 55779999999999999999876542 22211 111223566777766643321111 1111 1
Q ss_pred --CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCC
Q 018443 133 --SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIP 196 (356)
Q Consensus 133 --~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P-----------~~tG~~ls 196 (356)
..+.+.-++..++=.++|||.++ +-++| +.+.+.+|.+.+.+. +||+.==.| ..+|+.++
T Consensus 150 ~~~~~~~~dl~~Lk~KvdAGAdFiI-TQlfF---D~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP 225 (565)
T PLN02540 150 ATPEAYQKDLAYLKEKVDAGADLII-TQLFY---DTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIP 225 (565)
T ss_pred cCCCChHHHHHHHHHHHHcCCCEEe-ecccc---CHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCC
Confidence 11222456666666678999554 55677 667788888888765 476432222 24689999
Q ss_pred HHHHHHHhcC
Q 018443 197 PRVIHTMAQS 206 (356)
Q Consensus 197 ~~~l~~La~~ 206 (356)
.+++++|.+.
T Consensus 226 ~~i~~rLe~~ 235 (565)
T PLN02540 226 AEITAALEPI 235 (565)
T ss_pred HHHHHHHHhc
Confidence 9999999753
No 340
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=82.25 E-value=6.8 Score=38.69 Aligned_cols=82 Identities=20% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCC-CHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~L-t~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.|.+..-++.+.+.++|++=+.|=|-|-|--.+ +.--.-+-++.+.+.... +||+++=+-.+.+|+-... +..|+
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~---~~tG~ 227 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVERCL---KYTGA 227 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHH---HHhCC
Confidence 688888889999999999999999987765543 333334455566666655 9999977666777765444 34899
Q ss_pred CEEEEcC
Q 018443 152 HAALHIN 158 (356)
Q Consensus 152 davlv~p 158 (356)
||||+.-
T Consensus 228 dGVM~ar 234 (358)
T KOG2335|consen 228 DGVMSAR 234 (358)
T ss_pred ceEEecc
Confidence 9999863
No 341
>PRK09389 (R)-citramalate synthase; Provisional
Probab=82.22 E-value=11 Score=39.02 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=81.5
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 143 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~la 143 (356)
+.|-+ ..+-|.+-+.+.++...+.|++-|.++-|.| .+++++-.++++.+.+.. ++|+=++ .+|+..-++.-+
T Consensus 132 ~~~ed-~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~lv~~l~~~~--~v~l~~H-~HND~GlAvANa 204 (488)
T PRK09389 132 LSGED-ASRADLDFLKELYKAGIEAGADRICFCDTVG---ILTPEKTYELFKRLSELV--KGPVSIH-CHNDFGLAVANT 204 (488)
T ss_pred EEEee-CCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CcCHHHHHHHHHHHHhhc--CCeEEEE-ecCCccHHHHHH
Confidence 34443 4678999999999999999999999999999 789999999998887654 2554433 467888899999
Q ss_pred HHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018443 144 EQGFAVGMHAALHINPYYG----KTSLEGLISHFD 174 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~ 174 (356)
..|.++||+.|-..---++ ..+-++++.+++
T Consensus 205 laAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~L~ 239 (488)
T PRK09389 205 LAALAAGADQVHVTINGIGERAGNASLEEVVMALK 239 (488)
T ss_pred HHHHHcCCCEEEEEcccccccccCccHHHHHHHHH
Confidence 9999999999977665443 345677766664
No 342
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=82.19 E-value=11 Score=37.27 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEc--cCcccccC-------------CCHHHHHHHHHHHHHHh-CCCcEEEE-ecCCCCHH
Q 018443 75 LEAYDDLVNMQIVNGAEGMIVG--GTTGEGQL-------------MSWDEHIMLIGHTVNCF-GASVKVIG-NTGSNSTR 137 (356)
Q Consensus 75 ~~~l~~~v~~li~~Gv~Gl~v~--GstGE~~~-------------Lt~eEr~~li~~~~~~~-~grvpVi~-gvg~~st~ 137 (356)
.+-+...++--.+.|+|=|=+. |+.++|.. ++.+.-.+.++.+++.+ +|++||++ |=...+.+
T Consensus 216 ~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~ 295 (348)
T PRK09250 216 ADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGED 295 (348)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHH
Confidence 4445555555557888877443 33344333 34445555666666654 78899755 44444788
Q ss_pred HHHHHHHHH---HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018443 138 EAIHATEQG---FAVGMHAALHINPYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 138 ~ai~lar~a---~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~ 178 (356)
+.++.++.+ .+.|+.++.+--=.|..+++ +-++..++|.+
T Consensus 296 e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~-ea~~~~~~i~~ 338 (348)
T PRK09250 296 DLLDAVRTAVINKRAGGMGLIIGRKAFQRPMA-EGVKLLNAIQD 338 (348)
T ss_pred HHHHHHHHHHHhhhcCCcchhhchhhhcCCcH-HHHHHHHHHHH
Confidence 999999999 99999999988777777764 44677777765
No 343
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=82.16 E-value=19 Score=34.49 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCC------------CCHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGS------------NSTREA 139 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~------------~st~~a 139 (356)
+|.....+.++..++.|++.+.+=++ .|+.+|-.++.+.+++.+.. .+.|=+=+|. .+..+.
T Consensus 81 lDH~~~~e~i~~ai~~Gf~sVmid~s-----~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~ 155 (282)
T TIGR01859 81 LDHGSSYESCIKAIKAGFSSVMIDGS-----HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADP 155 (282)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEECCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCH
Q ss_pred HHHHHHHHHcCCCEEEEc----CCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEE
Q 018443 140 IHATEQGFAVGMHAALHI----NPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 212 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~----pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~pnivGi 212 (356)
=+..+..++.|+|.+.+. .+.|.+...-+ ++..++|.+. .|+++.. |..++.+.+.++.+. ++.+|
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~-~e~L~~i~~~~~iPlv~hG-----gSGi~~e~i~~~i~~-Gi~ki 227 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLD-FERLKEIKELTNIPLVLHG-----ASGIPEEQIKKAIKL-GIAKI 227 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCccC-HHHHHHHHHHhCCCEEEEC-----CCCCCHHHHHHHHHc-CCCEE
No 344
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=82.09 E-value=38 Score=32.88 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHH----HHHHHhCC---CcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIG----HTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~----~~~~~~~g---rvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
+.++++.+++.|++++.+.-+++. .||.++..+.+. .+++.++. .++++-.++. +. .+.....+.|
T Consensus 179 ~~~~~~~~ieaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~-~~----~~~~~~~~~~ 251 (335)
T cd00717 179 TIEYLKAQIEAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKG-AG----GLLEDLAQLG 251 (335)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCC-CH----HHHHHHHhcC
Confidence 455666677899999987766554 799999987763 44444433 3456544443 22 4566667778
Q ss_pred CCEEEEc
Q 018443 151 MHAALHI 157 (356)
Q Consensus 151 adavlv~ 157 (356)
+|.+.+-
T Consensus 252 ~~~~s~d 258 (335)
T cd00717 252 ADVVGLD 258 (335)
T ss_pred CCEEEeC
Confidence 8876543
No 345
>PRK05660 HemN family oxidoreductase; Provisional
Probab=81.97 E-value=25 Score=35.06 Aligned_cols=100 Identities=8% Similarity=0.077 Sum_probs=67.2
Q ss_pred CCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC--CcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC--
Q 018443 88 NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-- 163 (356)
Q Consensus 88 ~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g--rvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~-- 163 (356)
.+++.|++.| |+...|+.++-.++++.+.+..+- ...+-+-+...+. +-+..+..+++|++.+.+-.-.+..
T Consensus 57 ~~v~ti~~GG--GtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l--~~e~l~~Lk~~Gv~risiGvqS~~~~~ 132 (378)
T PRK05660 57 REVHSIFIGG--GTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTV--EADRFVGYQRAGVNRISIGVQSFSEEK 132 (378)
T ss_pred CceeEEEeCC--CccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcC--CHHHHHHHHHcCCCEEEeccCcCCHHH
Confidence 4688888876 678899999999999999886532 2222222221122 3377777888999999888765531
Q ss_pred -------CCHHHHHHHHHHHHhc-C-Ce---EEEeCCCCC
Q 018443 164 -------TSLEGLISHFDSVLSM-G-PT---IIYNVPSRT 191 (356)
Q Consensus 164 -------~s~~~l~~y~~~va~~-~-Pi---ilYn~P~~t 191 (356)
.+.+++.+-++.+.+. . ++ ++|..|..|
T Consensus 133 L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 133 LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 4667777777777666 2 33 678888643
No 346
>PRK12677 xylose isomerase; Provisional
Probab=81.95 E-value=55 Score=32.80 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEE-e-------------cCCC-------C
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIG-N-------------TGSN-------S 135 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~-g-------------vg~~-------s 135 (356)
+...++.+.+.|.+||-+....-.-+..+..||.+.++.+.+... ..+.|.+ . ..+. +
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~A 112 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYA 112 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHH
Confidence 567778888889999976433323334455565444444444332 2344321 1 1111 1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCC-----CCCCCHHHHHHH----HHHHHhc-------CCeEEEeCCCC--CCCC-CC
Q 018443 136 TREAIHATEQGFAVGMHAALHINPY-----YGKTSLEGLISH----FDSVLSM-------GPTIIYNVPSR--TGQD-IP 196 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~-----y~~~s~~~l~~y----~~~va~~-------~PiilYn~P~~--tG~~-ls 196 (356)
.+...+-++.|+++|++.+.+.+-. ....+.++..++ ++.+++. +.+.|=+.|.. ..+- -+
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~t 192 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLPT 192 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeCC
Confidence 3334555677888999988876542 122233333333 3355543 23455555532 1222 23
Q ss_pred HHHHHHHh-c--CCCEEEEeecCc
Q 018443 197 PRVIHTMA-Q--SPNLAGVKECVG 217 (356)
Q Consensus 197 ~~~l~~La-~--~pnivGiK~s~~ 217 (356)
++...++. + .|+.+|+=...+
T Consensus 193 ~~~al~li~~lg~~~~vGv~lD~g 216 (384)
T PRK12677 193 VGHALAFIATLEHPEMVGLNPEVG 216 (384)
T ss_pred HHHHHHHHHHhCCCccEEEeeech
Confidence 55555555 3 477777664333
No 347
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=81.82 E-value=23 Score=36.58 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=83.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE--
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL-- 155 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl-- 155 (356)
..+.++.|+++|++-|++=.+.| ++ +--.++++.+.+.. .++|||+|-.. | .+-++++.++|||++-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g--~~---~~~~~~i~~i~~~~-~~~~vi~g~~~--t---~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHG--HQ---VKMISAIKAVRALD-LGVPIVAGNVV--S---AEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCC--Cc---HHHHHHHHHHHHHC-CCCeEEEeccC--C---HHHHHHHHHhCCCEEEEC
Confidence 46788899999999998866664 33 44455565555544 36899997443 2 2344555679999997
Q ss_pred ------EcCCCCCC---CCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc--CCC-----EEEEeecCch
Q 018443 156 ------HINPYYGK---TSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPN-----LAGVKECVGN 218 (356)
Q Consensus 156 ------v~pP~y~~---~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~--~pn-----ivGiK~s~~d 218 (356)
.....+.. ++-..+.+-.++..+. .|||- .-|+.-+-+..+.|+- .-- +.|-.++.++
T Consensus 295 ~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via-----dGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA-----DGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE-----eCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 45555532 4334444444444443 56553 2467777788888873 222 2233333332
Q ss_pred hhHhhhhCCCeEEEecCcc
Q 018443 219 DRVEHYTGNGIVVWSGNDD 237 (356)
Q Consensus 219 ~~i~~~~~~~~~v~~G~d~ 237 (356)
. +..+.+..+..|-|...
T Consensus 370 ~-~~~~~g~~~k~yrGmgs 387 (475)
T TIGR01303 370 L-MRDRDGRPYKESFGMAS 387 (475)
T ss_pred e-EEeECCEEEEEEecccC
Confidence 1 11123445677777654
No 348
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.67 E-value=48 Score=31.35 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccc----ccC------------CCHHHHHHHHHHHHHHhCCCcEEEEe
Q 018443 67 YLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQL------------MSWDEHIMLIGHTVNCFGASVKVIGN 130 (356)
Q Consensus 67 f~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE----~~~------------Lt~eEr~~li~~~~~~~~grvpVi~g 130 (356)
|---|--|++.+.+.++.+.+.|+|-|=+.=-.+. ++. +|.++-.++++.+.+. ..++|++.=
T Consensus 17 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~-~~~~p~vlm 95 (258)
T PRK13111 17 YITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK-DPTIPIVLM 95 (258)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEEEE
Confidence 33468899999999999999999998854322211 111 2333334444444321 235786544
Q ss_pred cCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-C
Q 018443 131 TGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-S 206 (356)
Q Consensus 131 vg~~st~~--ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~-~ 206 (356)
+..|..-. .=++.+.++++|+|++++ | -...++...|.....+. ...+..=.| .-+.+.++++++ .
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGvii--p---DLp~ee~~~~~~~~~~~gl~~I~lvap-----~t~~eri~~i~~~s 165 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLII--P---DLPPEEAEELRAAAKKHGLDLIFLVAP-----TTTDERLKKIASHA 165 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEE--C---CCCHHHHHHHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHhC
Confidence 43332221 224688889999999998 3 23457888888887775 455544444 245677888885 4
Q ss_pred CCEEEE---eecCch-----h-------hHhhhhCCCeEEEecCcc---hhHhHHHHcCCceeecccc
Q 018443 207 PNLAGV---KECVGN-----D-------RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTS 256 (356)
Q Consensus 207 pnivGi---K~s~~d-----~-------~i~~~~~~~~~v~~G~d~---~~l~~~l~~Ga~G~is~~~ 256 (356)
+.++.+ .-.+|. . ++++.. +..++.|..- .-... +..++||++.|++
T Consensus 166 ~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~-~~~~ADGviVGSa 230 (258)
T PRK13111 166 SGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAA-IAAVADGVIVGSA 230 (258)
T ss_pred CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHH-HHHhCCEEEEcHH
Confidence 666544 221221 1 122322 4455555431 12223 3446999998875
No 349
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=81.47 E-value=20 Score=33.67 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=41.2
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018443 130 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 188 (356)
Q Consensus 130 gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P 188 (356)
+....+.+...+..+.+.+.|+|++++.+. +.+.+...++.+.++ .|+++++.+
T Consensus 36 ~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-----~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 36 GPTGTTAEGQIEVVNSLIAQKVDAIAISAN-----DPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----ChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 444567888889999999999999999753 345566667777776 799999864
No 350
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=81.39 E-value=5.1 Score=39.21 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=62.6
Q ss_pred HHHHHHHHCCCCEEEEccCcccccCC-CHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 80 DLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstGE~~~L-t~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
++.+..++.|+|+|++=|.-+=++.- +.+.-..|+..+.+.++ +|||+. |+-.+.+.+ ..|..+|||+|++-.
T Consensus 147 ~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPViaA-GGI~dg~~i---aaal~lGA~gV~~GT 220 (330)
T PF03060_consen 147 REARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIAA-GGIADGRGI---AAALALGADGVQMGT 220 (330)
T ss_dssp HHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEEE-SS--SHHHH---HHHHHCT-SEEEESH
T ss_pred HHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcC--CcEEEe-cCcCCHHHH---HHHHHcCCCEeecCC
Confidence 45667788999999986653333333 12246667777777664 899873 333333333 466789999999988
Q ss_pred CCCCCCCHHHHHHHHHHH-Hhc--CCeEEEeCCC-CCCCCCCHHHHHHHhc
Q 018443 159 PYYGKTSLEGLISHFDSV-LSM--GPTIIYNVPS-RTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 159 P~y~~~s~~~l~~y~~~v-a~~--~PiilYn~P~-~tG~~ls~~~l~~La~ 205 (356)
.|... .+..+-+.|++. .++ ..+++...+. +....+..+..+++.+
T Consensus 221 rFl~t-~Es~~~~~~K~~l~~a~~~dtv~t~~~~G~~~R~l~n~~~~~~~~ 270 (330)
T PF03060_consen 221 RFLAT-EESGASDAYKQALVDATEEDTVLTRSFSGRPARVLRNPFTEEWEE 270 (330)
T ss_dssp HHHTS-TTS-S-HHHHHHHHHGGTT-EEEESTTTTS-EEEE-SHHHHHHHH
T ss_pred eEEec-ccccChHHHHHHHHhCCCCCEEEEeecccchhhhhCcHHHHHHHh
Confidence 76532 233344445544 343 4676666442 3333455566666653
No 351
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=81.36 E-value=9.5 Score=39.92 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
.+.|.+-+.+.++..++.|++-+.++-|+| .++++|-.++++.+.+.++ . +.+.--.+|+.--++.-+-.|.++|
T Consensus 149 ~r~~~~~l~~~~~~a~~aGad~i~i~DTvG---~~~P~~v~~li~~l~~~~~-~-~~i~vH~HND~GlAvANslaAv~AG 223 (526)
T TIGR00977 149 YKANPEYALATLATAQQAGADWLVLCDTNG---GTLPHEISEITTKVKRSLK-Q-PQLGIHAHNDSGTAVANSLLAVEAG 223 (526)
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEecCCC---CcCHHHHHHHHHHHHHhCC-C-CEEEEEECCCCChHHHHHHHHHHhC
Confidence 378999999999999999999999999999 7899999999999988765 2 2222235788889999999999999
Q ss_pred CCEEEEcCCCC
Q 018443 151 MHAALHINPYY 161 (356)
Q Consensus 151 adavlv~pP~y 161 (356)
|+.+-..-=-+
T Consensus 224 A~~Vd~TinGi 234 (526)
T TIGR00977 224 ATMVQGTINGY 234 (526)
T ss_pred CCEEEEecccc
Confidence 99998765433
No 352
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.33 E-value=7.1 Score=36.01 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=46.7
Q ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC----------
Q 018443 64 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------- 133 (356)
Q Consensus 64 ~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~---------- 133 (356)
..|+.-+|-|.-. +-++.+++.|++++.+ |+...- ..++++.+++..+.. .+++++..
T Consensus 76 ~~~l~v~GGi~~~---~~~~~~~~~Ga~~v~i-Gs~~~~-------~~~~~~~i~~~~g~~-~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 76 GVPVQLGGGIRSA---EDAASLLDLGVDRVIL-GTAAVE-------NPEIVRELSEEFGSE-RVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred CCcEEEcCCcCCH---HHHHHHHHcCCCEEEE-ChHHhh-------ChHHHHHHHHHhCCC-cEEEEEEeeCCEEEECCC
Confidence 3456556665511 2245555789999866 443321 124555566655322 24444421
Q ss_pred -CCHH-HHHHHHHHHHHcCCCEEEEcC
Q 018443 134 -NSTR-EAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 134 -~st~-~ai~lar~a~~~Gadavlv~p 158 (356)
.++. +.+++++.+.+.|++.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~ 170 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTN 170 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 1112 568888888889999888754
No 353
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=81.30 E-value=29 Score=34.93 Aligned_cols=83 Identities=10% Similarity=-0.040 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEE--cCCCCC---------CCCHHHHHHHHH
Q 018443 107 WDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGFAVGMHAALH--INPYYG---------KTSLEGLISHFD 174 (356)
Q Consensus 107 ~eEr~~li~~~~~~~~grvpVi~gvg~-~st~~ai~lar~a~~~Gadavlv--~pP~y~---------~~s~~~l~~y~~ 174 (356)
.++..+.+..+.+.. +++|||+.+.. .+.++-.++++..++.|||++-+ ..|... ..+.+.+.+-.+
T Consensus 97 ~~~~l~~i~~~k~~~-~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 97 FETMLAEFKQLKEEY-PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred HHHHHHHHHHHHhhC-CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 556666555544333 35799999944 78999999999999999999974 334431 123344555555
Q ss_pred HHHhc--CCeEEEeCCCC
Q 018443 175 SVLSM--GPTIIYNVPSR 190 (356)
Q Consensus 175 ~va~~--~PiilYn~P~~ 190 (356)
.|.+. .|+++==.|..
T Consensus 176 ~Vk~~~~iPv~vKLsPn~ 193 (385)
T PLN02495 176 WINAKATVPVWAKMTPNI 193 (385)
T ss_pred HHHHhhcCceEEEeCCCh
Confidence 55443 68887766643
No 354
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=81.30 E-value=46 Score=30.93 Aligned_cols=124 Identities=11% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccccc---CCCHHHHHHHHHHHHHHhCCCcEEEEe------cCCCC-------HHHHHH
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQ---LMSWDEHIMLIGHTVNCFGASVKVIGN------TGSNS-------TREAIH 141 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~---~Lt~eEr~~li~~~~~~~~grvpVi~g------vg~~s-------t~~ai~ 141 (356)
+..-++...+.|.+++=+......++ .++.++..++-+...+ . .+++.+. ..+.+ .+...+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~ 88 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-N--NIDVSVHAPYLINLASPDKEKVEKSIERLID 88 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-c--CCCEEEECCceecCCCCCHHHHHHHHHHHHH
Confidence 66788889999999985544444443 4778777776655443 2 3444442 22221 122344
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHH----HHHHHHHHHHhc---CCeEEEeCCCCC-CCCCCHHHHHHHh
Q 018443 142 ATEQGFAVGMHAALHINPYYGKTSLE----GLISHFDSVLSM---GPTIIYNVPSRT-GQDIPPRVIHTMA 204 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~~s~~----~l~~y~~~va~~---~PiilYn~P~~t-G~~ls~~~l~~La 204 (356)
.++.|+++|++.+.+.+.++...+.+ .+.+.++++++. ..+.+=|.|... ...-+++.+.++.
T Consensus 89 ~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll 159 (273)
T smart00518 89 EIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEII 159 (273)
T ss_pred HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHH
Confidence 56778889999988877666433332 344566666653 456777766432 2223677777776
No 355
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=81.20 E-value=17 Score=34.32 Aligned_cols=117 Identities=14% Similarity=0.231 Sum_probs=66.8
Q ss_pred CceeEeeecccCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-Cccc-ccCCCHH-HHHHHHHHHHHHhCC--CcEEEEe
Q 018443 57 LRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGE-GQLMSWD-EHIMLIGHTVNCFGA--SVKVIGN 130 (356)
Q Consensus 57 ~Gvi~al~TPf~~dg~-ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE-~~~Lt~e-Er~~li~~~~~~~~g--rvpVi~g 130 (356)
.||+-..+=-|.+.|. .+.+...++++.+++.|++-|=++| +|.- ....+.+ |..++.. +++.+.. ++||.+-
T Consensus 3 mgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~-~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 3 MGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVP-VIKALRDQPDVPISVD 81 (257)
T ss_pred EEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHHHHhcCCCeEEEe
Confidence 3444433333776666 5889999999999999999998875 3322 2234655 5445553 4443332 5676554
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018443 131 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 187 (356)
Q Consensus 131 vg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~ 187 (356)
+.. . ++ ++.|-++|++-+--+. ... .++ .+..+++. .|+++-+.
T Consensus 82 T~~--~-~v---i~~al~~G~~iINsis--~~~--~~~---~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 82 TYR--A-EV---ARAALEAGADIINDVS--GGQ--DPA---MLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CCC--H-HH---HHHHHHcCCCEEEECC--CCC--Cch---hHHHHHHcCCcEEEEeC
Confidence 443 2 22 3344445888766553 222 222 23335554 68777553
No 356
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=81.13 E-value=30 Score=33.03 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCC----C-----HHHHHHHHHHHHHHhCCCcEE-EEe-----cCCCCHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM----S-----WDEHIMLIGHTVNCFGASVKV-IGN-----TGSNSTR 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~L----t-----~eEr~~li~~~~~~~~grvpV-i~g-----vg~~st~ 137 (356)
-+..+++..+..+.+.|++.|++.. |..... . ..--.+|++.+.+..+...-+ +++ ..+.+.+
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~--GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~ 159 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALT--GDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFE 159 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEES--S-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHH
Confidence 3788999999999999999987653 222211 1 111345666555444332222 222 3445667
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 188 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P 188 (356)
.-++..++=.++|||.++ +-|.| +.+.+.+|.+.+.+. .||+.==.|
T Consensus 160 ~~~~~l~~Ki~aGA~f~i-TQ~~f---d~~~~~~~~~~~~~~g~~~pIi~GI~p 209 (287)
T PF02219_consen 160 AELKRLKKKIDAGADFII-TQPFF---DAEAFERFLDRLREAGIDVPIIPGIMP 209 (287)
T ss_dssp HHHHHHHHHHHTTESEEE-EEE-S---SHHHHHHHHHHHHHTTHTSEEEEEEE-
T ss_pred HHHHHHHHHHHCCCCEEe-ccccC---CHHHHHHHHHHHHHcCCCCcEEEEEec
Confidence 767777666789999766 44677 667788888887765 477654334
No 357
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=81.13 E-value=27 Score=36.03 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.-+.+-+.++++.+.+.|++.|.+.-|+|= +++++-.++++.+.+. .++||=++. +++.--++.-+-.|.++||
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~---l~P~~v~~Lv~alk~~--~~~pi~~H~-Hnt~GlA~An~laAieAGa 232 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSICIKDMAGI---LTPKAAKELVSGIKAM--TNLPLIVHT-HATSGISQMTYLAAVEAGA 232 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHhc--cCCeEEEEe-CCCCccHHHHHHHHHHcCC
Confidence 347888999999999999999999999994 7999999999888763 357776655 5567788888899999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018443 152 HAALHI-NPYYGK---TSLEGLISHFD 174 (356)
Q Consensus 152 davlv~-pP~y~~---~s~~~l~~y~~ 174 (356)
|.+=.. .|+-.. ++-|+++.+++
T Consensus 233 d~vD~ai~g~g~gagN~~tE~lv~~L~ 259 (468)
T PRK12581 233 DRIDTALSPFSEGTSQPATESMYLALK 259 (468)
T ss_pred CEEEeeccccCCCcCChhHHHHHHHHH
Confidence 988443 444333 33455554443
No 358
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=81.09 E-value=48 Score=31.09 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHcCCCEE
Q 018443 135 STREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadav 154 (356)
+.++..+..+++++.|||-+
T Consensus 150 ~~~~l~~~~~~~~~~gaDiv 169 (253)
T PRK02412 150 PKEEIVERLRKMESLGADIV 169 (253)
T ss_pred CHHHHHHHHHHHHHhCCCEE
Confidence 34555555566666666655
No 359
>PRK09875 putative hydrolase; Provisional
Probab=80.60 E-value=57 Score=31.48 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC--CEEEEcCCCCCCCCHHHHHHHHHHHHhcCCe
Q 018443 105 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM--HAALHINPYYGKTSLEGLISHFDSVLSMGPT 182 (356)
Q Consensus 105 Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga--davlv~pP~y~~~s~~~l~~y~~~va~~~Pi 182 (356)
+|..|++-+-..+..+..-.+||+++++.. + ...+.++.+++.|+ +.+++.-+-.. .+ .+|.+++++..=.
T Consensus 133 it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~-~-~g~e~l~il~e~Gvd~~rvvi~H~d~~-~d----~~~~~~l~~~G~~ 205 (292)
T PRK09875 133 ITPLEEKVFIAAALAHNQTGRPISTHTSFS-T-MGLEQLALLQAHGVDLSRVTVGHCDLK-DN----LDNILKMIDLGAY 205 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHCCcEEEcCCCc-c-chHHHHHHHHHcCcCcceEEEeCCCCC-CC----HHHHHHHHHcCCE
Confidence 566665433333333333456666665432 1 44445555556665 45554443321 11 3455555555444
Q ss_pred EEEeC
Q 018443 183 IIYNV 187 (356)
Q Consensus 183 ilYn~ 187 (356)
+=|+.
T Consensus 206 l~fD~ 210 (292)
T PRK09875 206 VQFDT 210 (292)
T ss_pred EEecc
Confidence 44443
No 360
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.58 E-value=17 Score=35.54 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=63.7
Q ss_pred HHHHHHHHCCCCEEEE-----ccCcccccCCCHHHHHHHHHHHHHHh----CCCcEEEE--ecCCCCHHHHHHHHHHHHH
Q 018443 80 DLVNMQIVNGAEGMIV-----GGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIG--NTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v-----~GstGE~~~Lt~eEr~~li~~~~~~~----~grvpVi~--gvg~~st~~ai~lar~a~~ 148 (356)
++.....+.|+|+|++ .|+.|+..++..-+ ++++.+.+.. ..++|||+ |+++. ..+ ..+..
T Consensus 114 ~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~--~v~~~l~~~~~~~~~~~iPViAAGGI~dg---r~~---aaala 185 (320)
T cd04743 114 GLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWE--SAIDALLAANGPDKAGKIHLLFAGGIHDE---RSA---AMVSA 185 (320)
T ss_pred HHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHH--HHHHHHHHhhcccccCCccEEEEcCCCCH---HHH---HHHHH
Confidence 3456677899999986 56788777775322 3444333221 23699887 44432 222 22334
Q ss_pred cCC--------CEEEEcCCCCCCCCHHH------HHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHh
Q 018443 149 VGM--------HAALHINPYYGKTSLEG------LISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 149 ~Ga--------davlv~pP~y~~~s~~~------l~~y~~~va~~~-PiilYn~P~~tG~~ls~~~l~~La 204 (356)
+|| ++|.+-..|.. |+|. --.|.+.+.++. -..+...+.+....+.-++..++.
T Consensus 186 LGA~~~~~Ga~~GV~mGTrFl~--t~Es~~~~~~~~~~k~~~l~a~~td~~~t~~G~~~R~l~n~~~~~~~ 254 (320)
T cd04743 186 LAAPLAERGAKVGVLMGTAYLF--TEEAVSAGAILPTFQDQAIAATRTALLETGPGHATRCVVSPFVDEFR 254 (320)
T ss_pred cCCcccccccccEEEEccHHhc--chhhcCcccccHHHHHHHHhCCCceEEEecCCCceeecCCHHHHHHH
Confidence 554 79999988764 3333 234566666552 223333344444456655555554
No 361
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=80.51 E-value=15 Score=35.39 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecCCCC---------HHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNS---------TREA 139 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg~~s---------t~~a 139 (356)
+|...--..+.+.++.|.+++.+ .+..++.||=.+..+.+++.+.. .++| +..+++.. .-+-
T Consensus 81 LDH~~~~e~i~~Ai~~GftSVM~-----DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~p 155 (283)
T PRK07998 81 LDHGKTFEDVKQAVRAGFTSVMI-----DGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEP 155 (283)
T ss_pred CcCCCCHHHHHHHHHcCCCEEEE-----eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCH
Q ss_pred HHHHHHHHHcCCCEEEEcCC-CCCCCCHHHH-HHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 140 IHATEQGFAVGMHAALHINP-YYGKTSLEGL-ISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 140 i~lar~a~~~Gadavlv~pP-~y~~~s~~~l-~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
-+..+.+++.|+|.+-+.-- ..+......+ ++-+++|.++ .|++++ -|..++.+.+++..+.
T Consensus 156 e~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlH-----GgSG~~~e~~~~ai~~ 221 (283)
T PRK07998 156 EKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIH-----GGSGIPPEILRSFVNY 221 (283)
T ss_pred HHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEe-----CCCCCCHHHHHHHHHc
No 362
>PRK09492 treR trehalose repressor; Provisional
Probab=80.50 E-value=51 Score=30.93 Aligned_cols=80 Identities=9% Similarity=-0.032 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 75 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 75 ~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
+++....+++|++.|..-|.+.|+..+. .-+..+|.+-+..+.+..+ +++....+..+.++..+.++...+.+.+|+
T Consensus 160 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~-~~~~~~R~~Gf~~al~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai 236 (315)
T PRK09492 160 EGAIKLLMQRLYDQGHRHISYLGVDHSD-VTTGKRRHQAYLAFCKQHK--LTPVAALGGLSMQSGYELVAKVLTPETTAL 236 (315)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCccc-chhHHHHHHHHHHHHHHcC--CCceeecCCCCchHHHHHHHHHhhcCCCEE
Confidence 5666777888888887777666432221 2234567777766666543 332222334444555555555444456776
Q ss_pred EEc
Q 018443 155 LHI 157 (356)
Q Consensus 155 lv~ 157 (356)
++.
T Consensus 237 ~~~ 239 (315)
T PRK09492 237 VCA 239 (315)
T ss_pred EEc
Confidence 654
No 363
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=80.44 E-value=14 Score=35.94 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHc--CC---CEEEEcCCCCCCCCHHHHHHHHHHHHhc----CCeEEEeCCCCCCC----CCCHHHH
Q 018443 134 NSTREAIHATEQGFAV--GM---HAALHINPYYGKTSLEGLISHFDSVLSM----GPTIIYNVPSRTGQ----DIPPRVI 200 (356)
Q Consensus 134 ~st~~ai~lar~a~~~--Ga---davlv~pP~y~~~s~~~l~~y~~~va~~----~PiilYn~P~~tG~----~ls~~~l 200 (356)
.+.++.++..+.+.++ |. .++|+- + .-|++++.+.++.+.+. ++|.=|--|+..+. -++|+.+
T Consensus 188 ~t~e~~Le~l~~ak~~~pgi~~~TgiIVG---l-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f 263 (302)
T TIGR00510 188 ATYRWSLKLLERAKEYLPNLPTKSGIMVG---L-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEF 263 (302)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecceEEEE---C-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHH
Confidence 3567777777777776 32 233332 2 55777788887777765 35556666644433 3567777
Q ss_pred HHHhcCCCEEEEee
Q 018443 201 HTMAQSPNLAGVKE 214 (356)
Q Consensus 201 ~~La~~pnivGiK~ 214 (356)
+.+.++..=.|+|.
T Consensus 264 ~~~~~~a~~~gf~~ 277 (302)
T TIGR00510 264 DYYRSVALEMGFLH 277 (302)
T ss_pred HHHHHHHHHcCChh
Confidence 77776544456664
No 364
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.43 E-value=9.3 Score=39.74 Aligned_cols=113 Identities=16% Similarity=0.046 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
.....++.|+++|++-+.+- +..+++-.. .+.++.+.+..+++++|++|.-. | .+-++.+.++|||++.+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~a~g~~~~~---~~~i~~ir~~~~~~~~V~aGnV~--t---~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--SSEGYSEWQ---KRTLDWIREKYGDSVKVGAGNVV--D---REGFRYLAEAGADFVKV 311 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--CcccccHHH---HHHHHHHHHhCCCCceEEecccc--C---HHHHHHHHHcCCCEEEE
Confidence 34567777999999999875 555544332 56677777777656777776543 2 34455566799999976
Q ss_pred cC-CC----------CCCCCHHHHHHHHHHHHh---c----CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018443 157 IN-PY----------YGKTSLEGLISHFDSVLS---M----GPTIIYNVPSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 157 ~p-P~----------y~~~s~~~l~~y~~~va~---~----~PiilYn~P~~tG~~ls~~~l~~La 204 (356)
-. |- ...++-..+.+-.++..+ + .|||. + .|+..+-+.++.|+
T Consensus 312 g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~via-d----gGir~~gdi~KAla 372 (502)
T PRK07107 312 GIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICS-D----GGIVYDYHMTLALA 372 (502)
T ss_pred CCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEE-c----CCCCchhHHHHHHH
Confidence 32 22 112222344444333311 1 46443 3 58888888999998
No 365
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=80.39 E-value=57 Score=31.80 Aligned_cols=128 Identities=6% Similarity=0.003 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-----CCHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-----NSTREAIHATEQ 145 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~-Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~-----~st~~ai~lar~ 145 (356)
....+...+.++++.+. |+..|++.| ||-..++++.-.++++..... +. +.. .++++ .+..-+-++++.
T Consensus 124 ~~~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i-~~-~~~-iri~tr~~~~~p~rit~el~~~ 198 (321)
T TIGR03821 124 QPNKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQI-PH-LKR-LRIHTRLPVVIPDRITSGLCDL 198 (321)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhC-CC-CcE-EEEecCcceeeHHHhhHHHHHH
Confidence 45667888888888754 899999988 998877766566677555442 11 111 12211 112233366667
Q ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 146 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
.++.|.+.++++.--...-..++..+-.+.+.++ .++. -+.+-..|++=+++++.+|.+
T Consensus 199 L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~-~qtvllkgiNDn~~~l~~L~~ 258 (321)
T TIGR03821 199 LANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLL-NQSVLLRGVNDNADTLAALSE 258 (321)
T ss_pred HHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEE-ecceeeCCCCCCHHHHHHHHH
Confidence 7777877775432211111224555666666665 4552 233334466667888888763
No 366
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=80.38 E-value=54 Score=31.11 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccC----cccc------------cCCCHHHHHHHHHHHHHHhCCCcEEEE
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGT----TGEG------------QLMSWDEHIMLIGHTVNCFGASVKVIG 129 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~Gs----tGE~------------~~Lt~eEr~~li~~~~~~~~grvpVi~ 129 (356)
||---|--|.+.+.+.++.+.+.|+|-+=+.=- ..++ .-++.+.-.++++.+.+. ..++|++.
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~-~~~~pivl 92 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKK-EPDIPIVL 92 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-CTSSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhcc-CCCCCEEE
Confidence 343468899999999999999999997744221 2222 234555556666666532 35789877
Q ss_pred ecCCCCHHH--HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-
Q 018443 130 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ- 205 (356)
Q Consensus 130 gvg~~st~~--ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~- 205 (356)
=+..|.... .=++.+.++++|+|++++.- . ..|+-..+.....+. +.++..=.| .-+.+-++++++
T Consensus 93 m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipD--L---P~ee~~~~~~~~~~~gl~~I~lv~p-----~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 93 MTYYNPIFQYGIERFFKEAKEAGVDGLIIPD--L---PPEESEELREAAKKHGLDLIPLVAP-----TTPEERIKKIAKQ 162 (259)
T ss_dssp EE-HHHHHHH-HHHHHHHHHHHTEEEEEETT--S---BGGGHHHHHHHHHHTT-EEEEEEET-----TS-HHHHHHHHHH
T ss_pred EeeccHHhccchHHHHHHHHHcCCCEEEEcC--C---ChHHHHHHHHHHHHcCCeEEEEECC-----CCCHHHHHHHHHh
Confidence 666554432 23488999999999999853 2 124545555554444 555555555 246788999885
Q ss_pred CCCEEEEe---ecCch-----h-------hHhhhhCCCeEEEecCcc--hhHhHHHHcCCceeecccc
Q 018443 206 SPNLAGVK---ECVGN-----D-------RVEHYTGNGIVVWSGNDD--QCHDARWNHGATGVISVTS 256 (356)
Q Consensus 206 ~pnivGiK---~s~~d-----~-------~i~~~~~~~~~v~~G~d~--~~l~~~l~~Ga~G~is~~~ 256 (356)
.+.++.+= -.+|. . ++++++ +.-++.|.+- --....+..|+||+|-|++
T Consensus 163 a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa 228 (259)
T PF00290_consen 163 ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLAAGADGVIVGSA 228 (259)
T ss_dssp -SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHHTTSSEEEESHH
T ss_pred CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHHccCCEEEECHH
Confidence 57777653 11221 1 233333 5566666541 1111235689999998864
No 367
>PRK15452 putative protease; Provisional
Probab=80.34 E-value=12 Score=38.19 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=53.8
Q ss_pred HHHHHHCCCCEEEEccCccc----ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC----CCHHHHHHHHHHHHHcCCCE
Q 018443 82 VNMQIVNGAEGMIVGGTTGE----GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS----NSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE----~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~----~st~~ai~lar~a~~~Gada 153 (356)
++..++.|+|.|++.|..=. ...+|.+|-.+.++.+-+ . .++|++.+.. ...++..+..+...++|+|+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~--~-g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDg 92 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA--L-GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDA 92 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH--c-CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCE
Confidence 34556889999998664211 134577887777765533 2 3466665332 23555667778888999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHH
Q 018443 154 ALHINPYYGKTSLEGLISHFDSVL 177 (356)
Q Consensus 154 vlv~pP~y~~~s~~~l~~y~~~va 177 (356)
+++..| +++.+.++..
T Consensus 93 vIV~d~--------G~l~~~ke~~ 108 (443)
T PRK15452 93 LIMSDP--------GLIMMVREHF 108 (443)
T ss_pred EEEcCH--------HHHHHHHHhC
Confidence 999754 4455555543
No 368
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=80.28 E-value=62 Score=31.70 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=75.3
Q ss_pred eEeeecccCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q 018443 60 ITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 138 (356)
Q Consensus 60 i~al~TPf~~dg~-ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ 138 (356)
+|-++.|++ .|+ .-..-.++++.-.-+.|+.-. .|+.+= ..++.+ ..+-.+.+.+. ...+|+++.++.....+
T Consensus 54 ~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~--~Gs~~~-~~~~~~-~~~~~~~vr~~-~~~~p~i~nl~~~~~~~ 127 (333)
T TIGR02151 54 APFYINAMT-GGSEEAGKINRNLARAARELGIPMG--VGSQRA-ALKDPE-TADTFEVVREE-APNGPLIANIGAPQLVE 127 (333)
T ss_pred CCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeE--EcCchh-hccChh-hHhHHHHHHHh-CCCCcEEeecCchhhcc
Confidence 456666665 344 222225666666667776544 244322 233444 44333555554 55789999988654432
Q ss_pred --HHHHHHHHHHcCCCEEEEcCCCCC-------CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 139 --AIHATEQGFAVGMHAALHINPYYG-------KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 139 --ai~lar~a~~~Gadavlv~pP~y~-------~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
.-+..+..+.+++|++-+--+... ..+-+.+.+..++|.+. .||++=-. |..++.++..+|.+
T Consensus 128 ~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~----g~g~~~~~a~~L~~ 201 (333)
T TIGR02151 128 GGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV----GFGISKEVAKLLAD 201 (333)
T ss_pred ccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec----CCCCCHHHHHHHHH
Confidence 222333344457777755432111 11234455777777775 69987643 34578888888865
No 369
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=80.19 E-value=24 Score=32.81 Aligned_cols=80 Identities=13% Similarity=-0.009 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcc----------CcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGG----------TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHA 142 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~G----------stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~l 142 (356)
-|.+.+.+.++.+.+ +.++|=+|- ..|+...-+.+.=.++++.+.+ + ++||.+=+....+.+++++
T Consensus 82 ~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~--~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 82 SSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-T--GVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred CCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c--CCCEEEEEcCCcCcCHHHH
Confidence 466777888877755 457775543 3477777778777888887765 3 6788875433211789999
Q ss_pred HHHHHHcCCCEEEE
Q 018443 143 TEQGFAVGMHAALH 156 (356)
Q Consensus 143 ar~a~~~Gadavlv 156 (356)
++.++++|+|++-+
T Consensus 158 a~~l~~aG~d~ihv 171 (233)
T cd02911 158 ARLIEKAGADIIHV 171 (233)
T ss_pred HHHHHHhCCCEEEE
Confidence 99999999997644
No 370
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=79.93 E-value=15 Score=33.87 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
....+++++.+.|++.+++...++.... ...-.++++.+.+.+ ++||+++=|-.|.+++.++.. .|+|++++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~----~G~~~v~i 99 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLR----AGADKVSI 99 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCceEEE
Confidence 4455677777889999999887765322 233456677776655 589998777767766655543 69999998
Q ss_pred cCCCCC
Q 018443 157 INPYYG 162 (356)
Q Consensus 157 ~pP~y~ 162 (356)
-...+.
T Consensus 100 g~~~~~ 105 (243)
T cd04731 100 NSAAVE 105 (243)
T ss_pred Cchhhh
Confidence 766554
No 371
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=79.72 E-value=7.9 Score=37.57 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE--ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 83 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 83 ~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~--gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
..-++.|++||+|.-+-|-..--+..- ++.+..+++++.+|+||+. ||-. .++ . -.|-.+||.+|.+--|+
T Consensus 238 ~~Ave~G~~GIIVSNHGgRQlD~vpAt-I~~L~Evv~aV~~ri~V~lDGGVR~-G~D-V----lKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 238 RKAVEAGVAGIIVSNHGGRQLDYVPAT-IEALPEVVKAVEGRIPVFLDGGVRR-GTD-V----LKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHhCCceEEEeCCCccccCcccch-HHHHHHHHHHhcCceEEEEecCccc-chH-H----HHHHhcccceEEecCch
Confidence 345688999999988887766665554 5666778889999999988 4422 222 2 24567999999999998
Q ss_pred CCCC---CHHHHHHHH
Q 018443 161 YGKT---SLEGLISHF 173 (356)
Q Consensus 161 y~~~---s~~~l~~y~ 173 (356)
.+.+ .+.++.+-.
T Consensus 311 v~gLA~~Ge~GV~~vl 326 (363)
T KOG0538|consen 311 VWGLAAKGEAGVKKVL 326 (363)
T ss_pred heeeccccchhHHHHH
Confidence 6653 344444333
No 372
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=79.54 E-value=4.1 Score=37.97 Aligned_cols=175 Identities=22% Similarity=0.215 Sum_probs=86.0
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 135 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s 135 (356)
++++...++=|.. ....+ .++.+.+.|.|.|+|.||+ ..-+.++-.++++ +. .++||+.-.|+.+
T Consensus 6 ~~~~h~~liDPdK---~~~~~----~~~~~~~~gtDai~VGGS~---~~~~~d~vv~~ik---~~--~~lPvilfPg~~~ 70 (230)
T PF01884_consen 6 WRKLHATLIDPDK---PNPEE----ALEAACESGTDAIIVGGSD---TGVTLDNVVALIK---RV--TDLPVILFPGSPS 70 (230)
T ss_dssp ----EEEEE-TTS---S-HHH----HHHHHHCTT-SEEEEE-ST---HCHHHHHHHHHHH---HH--SSS-EEEETSTCC
T ss_pred cccceEEEECCCC---CCcHH----HHHHHHhcCCCEEEECCCC---CccchHHHHHHHH---hc--CCCCEEEeCCChh
Confidence 4555666665543 33333 3444488999999999999 1224444444443 33 5789999887753
Q ss_pred HHHHHHHHHHHHHcCCCEEEEc------CCCCCCCCHHHHHHHHHHHHhc-CCe--EEEeCCCC----CC---CCCCHHH
Q 018443 136 TREAIHATEQGFAVGMHAALHI------NPYYGKTSLEGLISHFDSVLSM-GPT--IIYNVPSR----TG---QDIPPRV 199 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~------pP~y~~~s~~~l~~y~~~va~~-~Pi--ilYn~P~~----tG---~~ls~~~ 199 (356)
.- .-+||+++++ .|+|.--.+-+-...++..... .|. ++-|.-.. ++ .+++.+.
T Consensus 71 ~v----------s~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~ 140 (230)
T PF01884_consen 71 QV----------SPGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPE 140 (230)
T ss_dssp G------------TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHH
T ss_pred hc----------CcCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHH
Confidence 21 2679999886 3777544444444455555544 563 44443221 12 2334332
Q ss_pred H---HHHh-c-C-CCEEEEeecCch---h--hHhhh--hCCCeEEEecCc----chhHhHHHHcCCceeecccc
Q 018443 200 I---HTMA-Q-S-PNLAGVKECVGN---D--RVEHY--TGNGIVVWSGND----DQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 200 l---~~La-~-~-pnivGiK~s~~d---~--~i~~~--~~~~~~v~~G~d----~~~l~~~l~~Ga~G~is~~~ 256 (356)
+ ..|+ + . =.++.+-..||- . .+.+. .-.+..++.|.. +... ..+.+|+|-++.|+.
T Consensus 141 iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~-~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 141 IAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAR-EMAEAGADTIVVGNA 213 (230)
T ss_dssp HHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHH-HHHCTTSSEEEESCH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHH-HHHHCCCCEEEECCE
Confidence 2 2344 3 2 357778874443 1 22221 123455544432 2333 346789998887643
No 373
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=79.54 E-value=11 Score=36.99 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=79.9
Q ss_pred hhc-cccCCCCCCCCCcccccCCCCCCCCcc-hhcccCCccccccCceeEeeecccC--CC--CCCCHHHHHHHHHHHHH
Q 018443 14 FLL-LRCRKNRKWRPPQAAIIPNYHLPMRSF-EVKNRTSAEDIKALRLITAIKTPYL--PD--GRFDLEAYDDLVNMQIV 87 (356)
Q Consensus 14 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Gvi~al~TPf~--~d--g~ID~~~l~~~v~~li~ 87 (356)
||+ ..|+|+-+|-- ....+..|+..=+ ++|.++..+ . |..= +.+.+ ++ +..+.+....+++++.+
T Consensus 182 FlSp~~N~R~D~yGG---slenR~rf~~eii~air~~vg~d---~--v~vR-is~~~~~~~~~~~~~~ee~~~~~~~l~~ 252 (338)
T cd02933 182 FLRDGSNKRTDEYGG---SIENRARFLLEVVDAVAEAIGAD---R--VGIR-LSPFGTFNDMGDSDPEATFSYLAKELNK 252 (338)
T ss_pred hcCCccCCCCCcCCC---cHHHhhhHHHHHHHHHHHHhCCC---c--eEEE-ECccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 444 46788877742 2555666665555 556655422 1 1111 22221 11 24678888999999999
Q ss_pred CCCCEEEE-ccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCCCCC
Q 018443 88 NGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALHINPYYGKT 164 (356)
Q Consensus 88 ~Gv~Gl~v-~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G-adavlv~pP~y~~~ 164 (356)
.|++-|-+ .|++.+.. ..-....++.+.+.+ ++||++ +|... .+.++.+-+.| +|.|++.-|...-|
T Consensus 253 ~g~d~i~vs~g~~~~~~---~~~~~~~~~~ik~~~--~ipvi~-~G~i~----~~~a~~~l~~g~~D~V~~gR~~ladP 321 (338)
T cd02933 253 RGLAYLHLVEPRVAGNP---EDQPPDFLDFLRKAF--KGPLIA-AGGYD----AESAEAALADGKADLVAFGRPFIANP 321 (338)
T ss_pred cCCcEEEEecCCCCCcc---cccchHHHHHHHHHc--CCCEEE-ECCCC----HHHHHHHHHcCCCCEEEeCHhhhhCc
Confidence 99999987 45443322 333445555556655 578775 56554 55566666654 99999988876544
No 374
>PRK06498 isocitrate lyase; Provisional
Probab=79.54 E-value=62 Score=33.53 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE---------ccCcccccCCCHHHHHHHHHHHHHHhCC----CcEEEEecCCC---
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIV---------GGTTGEGQLMSWDEHIMLIGHTVNCFGA----SVKVIGNTGSN--- 134 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v---------~GstGE~~~Lt~eEr~~li~~~~~~~~g----rvpVi~gvg~~--- 134 (356)
|==+.....++++.++++|+.||.+ ||..+=-...+.+|...=+++++.+... +.-||+=+-+.
T Consensus 188 GfG~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~AAr~A~d~~G~~D~vIIARTDA~~A~ 267 (531)
T PRK06498 188 GFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRAVRYAFLELGVDDGVIVARTDSLGAG 267 (531)
T ss_pred CCCcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHHHHHHHHhcCCCCEEEEEecchhhcC
Confidence 4457788999999999999999987 5666656678899988888887765431 23344432111
Q ss_pred --------------------------------------------------------------CHHHHHHHHHHHHHcCCC
Q 018443 135 --------------------------------------------------------------STREAIHATEQGFAVGMH 152 (356)
Q Consensus 135 --------------------------------------------------------------st~~ai~lar~a~~~Gad 152 (356)
..+.+|..+..|..-|||
T Consensus 268 L~~~Id~~~~~g~~~~~~~~w~~~~~i~~~~~~~~~~~i~~~~~~~~~~Rt~eG~Y~~k~gtg~~~~I~r~i~a~apyAD 347 (531)
T PRK06498 268 LTQQIAVSQEPGDLGDQYNSFLDCEEIDAADLGNGDVVIKRDGKLLRPKRLPSGLFQFREGTGEDRCVLDCITSLQNGAD 347 (531)
T ss_pred CccccccccccchhhHHHHhhhhhcccCHHHhcccchhHhhcccccCCCCCcccceeecCCCchHHHHHHHHHhhcCcCc
Confidence 123366666656667788
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEEEeC-CC
Q 018443 153 AALHINPYYGKTSLEGLISHFDSVLSMGP--TIIYNV-PS 189 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~va~~~P--iilYn~-P~ 189 (356)
-+.+-.+ +|+-+++..|-+.|-+..| .+.||+ |+
T Consensus 348 LlW~ET~---~P~~~qa~~fa~~Ir~~~P~~~LaYN~SPS 384 (531)
T PRK06498 348 LLWIETE---KPHVAQIAGMVNRIREVVPNAKLVYNNSPS 384 (531)
T ss_pred EEEecCC---CCCHHHHHHHHHHHHHHCCCCeEEecCCCC
Confidence 7776543 5678888888888888765 788987 54
No 375
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.51 E-value=20 Score=33.69 Aligned_cols=125 Identities=17% Similarity=0.113 Sum_probs=67.7
Q ss_pred ecccCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEEecC---------
Q 018443 64 KTPYLPDGRF-DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG--------- 132 (356)
Q Consensus 64 ~TPf~~dg~I-D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~gvg--------- 132 (356)
-+|+.-+|-+ +.+. ++.+++.|++++.++..+= |...+++.+++..+ .++ ++++-
T Consensus 74 ~~pv~~gGGi~s~~d----~~~l~~~G~~~vvigs~~~--------~~~~~~~~~~~~~~~~~i--~vsiD~k~g~~~~~ 139 (258)
T PRK01033 74 FMPLCYGGGIKTLEQ----AKKIFSLGVEKVSINTAAL--------EDPDLITEAAERFGSQSV--VVSIDVKKNLGGKF 139 (258)
T ss_pred CCCEEECCCCCCHHH----HHHHHHCCCCEEEEChHHh--------cCHHHHHHHHHHhCCCcE--EEEEEEecCCCCcE
Confidence 4566666655 3322 3444567999887653222 22355566666553 232 22221
Q ss_pred --------CCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHH
Q 018443 133 --------SNSTREAIHATEQGFAVGMHAALHINPY----YGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPR 198 (356)
Q Consensus 133 --------~~st~~ai~lar~a~~~Gadavlv~pP~----y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~ 198 (356)
..+.....++++.+++.|++.+++..-. +..++ .+.++++++. .|++. .|---+++
T Consensus 140 ~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d----~~~i~~~~~~~~ipvIa------sGGv~s~e 209 (258)
T PRK01033 140 DVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYD----LELLKSFRNALKIPLIA------LGGAGSLD 209 (258)
T ss_pred EEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCC----HHHHHHHHhhCCCCEEE------eCCCCCHH
Confidence 1123346788888888999888887432 22232 3444555554 46643 24456677
Q ss_pred HHHHHhcCCCEEEE
Q 018443 199 VIHTMAQSPNLAGV 212 (356)
Q Consensus 199 ~l~~La~~pnivGi 212 (356)
.+.++.+..++-|+
T Consensus 210 D~~~l~~~~GvdgV 223 (258)
T PRK01033 210 DIVEAILNLGADAA 223 (258)
T ss_pred HHHHHHHHCCCCEE
Confidence 78777643344444
No 376
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=79.50 E-value=13 Score=33.92 Aligned_cols=104 Identities=18% Similarity=0.083 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC----CCCHHHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG----SNSTREAIHATEQGF 147 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg----~~st~~ai~lar~a~ 147 (356)
+++.+...++++.+++.|++.+=+ |...+...... ......++.+||+.-- ..+.++..++.+.++
T Consensus 71 ~~~~~~~~~ll~~~~~~~~d~iDi-----E~~~~~~~~~~-----~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~ 140 (224)
T PF01487_consen 71 QGSEEEYLELLERAIRLGPDYIDI-----ELDLFPDDLKS-----RLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQ 140 (224)
T ss_dssp SS-HHHHHHHHHHHHHHTSSEEEE-----EGGCCHHHHHH-----HHHHHHTTSEEEEEEEESS---THHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE-----EcccchhHHHH-----HHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 467888889999999988888877 55544333333 1222345678888653 567788899999999
Q ss_pred HcCCCEEEEcCCCCCCCCHHHHHH---HHHHHHhc--CCeEEEeCC
Q 018443 148 AVGMHAALHINPYYGKTSLEGLIS---HFDSVLSM--GPTIIYNVP 188 (356)
Q Consensus 148 ~~Gadavlv~pP~y~~~s~~~l~~---y~~~va~~--~PiilYn~P 188 (356)
+.|+|.+=+....- +.++..+ +.....+. .|++.|+.-
T Consensus 141 ~~gadivKia~~~~---~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 141 ELGADIVKIAVMAN---SPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp HTT-SEEEEEEE-S---SHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred hcCCCeEEEEeccC---CHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 99999874433222 3444443 33333332 689999853
No 377
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=79.49 E-value=13 Score=36.62 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHCCCCEEEEc------cCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 82 VNMQIVNGAEGMIVG------GTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~------GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
++.++++|+|++.|. .+|-+..---.. ....+..+++.+.+ ++|||+-=|-...-+.+ .|-.+|||+|
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~p-qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~----KALA~GAd~V 238 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVGYP-QLSAVIECADAAHGLKGHIISDGGCTCPGDVA----KAFGAGADFV 238 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCCcC-HHHHHHHHHHHhccCCCeEEEcCCcCchhHHH----HHHHcCCCEE
Confidence 456778899999876 344444333333 45555566666666 89999844333333322 3456999999
Q ss_pred EEc
Q 018443 155 LHI 157 (356)
Q Consensus 155 lv~ 157 (356)
|+-
T Consensus 239 MlG 241 (343)
T TIGR01305 239 MLG 241 (343)
T ss_pred EEC
Confidence 997
No 378
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=79.43 E-value=24 Score=36.64 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv 156 (356)
...++.++++|++-|.+..+.|... - -.+.++.+.+... .++|++|... +.+-++.+.++|||++.+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~--~---~~~~i~~ik~~~~-~~~v~aG~V~-----t~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSI--Y---QIDMIKKLKSNYP-HVDIIAGNVV-----TADQAKNLIDAGADGLRI 309 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCch--H---HHHHHHHHHhhCC-CceEEECCcC-----CHHHHHHHHHcCCCEEEE
Confidence 6777889999999999877655421 1 2456666666653 6888886443 234556777899999976
No 379
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=79.15 E-value=33 Score=36.38 Aligned_cols=100 Identities=9% Similarity=0.114 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEEec---CC--CCHHHHHHHHHHHHHc
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GS--NSTREAIHATEQGFAV 149 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~gv---g~--~st~~ai~lar~a~~~ 149 (356)
+..+..++..+++|++-+-+.-+..+. + -++..++.+. ....+.+.+ .+ .+.+..+++++.+.++
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd~-----~----n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALNDP-----R----NLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEM 161 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH-----H----HHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc
Confidence 567788999999999999887666663 1 2333333332 122343332 22 2578899999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018443 150 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 185 (356)
Q Consensus 150 Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilY 185 (356)
|+|.+.+.- ..+..++.++.+.++++.+. .||-++
T Consensus 162 Gad~I~i~D-t~G~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 162 GVDSICIKD-MAGILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred CCCEEEECC-CCCCcCHHHHHHHHHHHHHhCCCceEEE
Confidence 999877654 56667889999999999887 465544
No 380
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=79.15 E-value=16 Score=38.12 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
.+-|.+-+.++++.+.+.|++-+.++-|+| .+++++-.++++.+.+.+ ++|+=++. +++.--++.-+..|.++|
T Consensus 153 ~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG---~~~P~~v~~li~~l~~~~--~v~i~~H~-HND~GlA~ANslaAi~aG 226 (524)
T PRK12344 153 YKANPEYALATLKAAAEAGADWVVLCDTNG---GTLPHEVAEIVAEVRAAP--GVPLGIHA-HNDSGCAVANSLAAVEAG 226 (524)
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEccCCC---CcCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCChHHHHHHHHHHhC
Confidence 368999999999999999999999999988 579999999999988877 45655554 567888899999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHH
Q 018443 151 MHAALHINPYYG----KTSLEGLISHF 173 (356)
Q Consensus 151 adavlv~pP~y~----~~s~~~l~~y~ 173 (356)
|+.+=..---.+ ..+-++++.++
T Consensus 227 a~~Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 227 ARQVQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred CCEEEEecccccccccCcCHHHHHHHH
Confidence 999876654332 24455655444
No 381
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=79.14 E-value=65 Score=31.30 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHH----HHHHhc
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DSVLSM 179 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~----~~va~~ 179 (356)
++..+++++...++|||++++..|.....|++...+|+ +.|.+.
T Consensus 179 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~ 226 (338)
T TIGR01464 179 TDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEE 226 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence 34456777777788999998887755556766655444 556553
No 382
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.07 E-value=39 Score=28.70 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-vg~~st~~ai~lar~a~~~Gadavlv 156 (356)
.++.++...+.+++-+.+....+. +...-.++++...+.-..+++|++| .......+.-+..+.+++.|+|++.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGH----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccc----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 345666666777888777666553 4444556666665553345666554 33334445555667777888877652
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018443 157 INPYYGKTSLEGLISHFDSVL 177 (356)
Q Consensus 157 ~pP~y~~~s~~~l~~y~~~va 177 (356)
| ..+.+++.+|.+.-+
T Consensus 119 --~---~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 119 --P---GTDPEEAIDDLKKDL 134 (137)
T ss_pred --c---CCCHHHHHHHHHHHh
Confidence 1 235678888877654
No 383
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.02 E-value=31 Score=33.20 Aligned_cols=121 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecC--------------CC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTG--------------SN 134 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg--------------~~ 134 (356)
+|...-...+...++.|.+.+.+=|| .|+.+|=.+..+.+++.+.. .+.| +..++ -+
T Consensus 81 LDHg~~~e~i~~Ai~~GftSVM~DgS-----~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T 155 (284)
T PRK09195 81 LDHHEKFDDIAQKVRSGVRSVMIDGS-----HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYT 155 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEeCCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCC
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y---~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+.+++.++.+ +.|+|++.+.--.- ++..+.==++-.++|.+. .|++++= |..++.+.+++..+.
T Consensus 156 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHG-----gSG~~~e~~~~ai~~ 224 (284)
T PRK09195 156 DPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHG-----ASGLPTKDIQQTIKL 224 (284)
T ss_pred CHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEec-----CCCCCHHHHHHHHHc
No 384
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.98 E-value=23 Score=35.08 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
++-....|++|+-+... .++..+. .+..+.+ -++|++..+.++ ++.|.+.|+|.+.+.|-|.
T Consensus 210 vdlAl~~~aDGVHLgq~-----dl~~~~a-------R~llg~~--~iIG~S~Hs~~e----~~~A~~~GaDYI~lGPvf~ 271 (347)
T PRK02615 210 VDIALAVDADGVHLGQE-----DLPLAVA-------RQLLGPE--KIIGRSTTNPEE----MAKAIAEGADYIGVGPVFP 271 (347)
T ss_pred HHHHHHcCCCEEEeChh-----hcCHHHH-------HHhcCCC--CEEEEecCCHHH----HHHHHHcCCCEEEECCCcC
Confidence 34445567888876322 2333333 2223322 367888877554 4667788999999885443
Q ss_pred C--CCC-HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 162 G--KTS-LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 162 ~--~~s-~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
. ++. ..--.++++.+++. .|++..- .++++.+.++.+
T Consensus 272 T~tKp~~~~~Gle~l~~~~~~~~iPv~AiG-------GI~~~ni~~l~~ 313 (347)
T PRK02615 272 TPTKPGKAPAGLEYLKYAAKEAPIPWFAIG-------GIDKSNIPEVLQ 313 (347)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCEEEEC-------CCCHHHHHHHHH
Confidence 2 221 11125677777765 5666542 367888888874
No 385
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=78.73 E-value=33 Score=33.55 Aligned_cols=72 Identities=18% Similarity=0.063 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----HHHHHHhCC---CcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----~~~~~~~~g---rvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
+.++++.++++|++++.+.-+++. .||.++..+.+ +.+++.++. ..+++-.++. +...+ +...+.|
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~--~~~~~---~~~~~~~ 260 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWAG--ALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKG--AGELL---EAMAETG 260 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCC--cHHHH---HHHHhcC
Confidence 455667778899999988777665 69999998776 345554443 3456544442 22233 3345678
Q ss_pred CCEEEE
Q 018443 151 MHAALH 156 (356)
Q Consensus 151 adavlv 156 (356)
+|++.+
T Consensus 261 ~~~is~ 266 (346)
T PRK00115 261 ADVVGL 266 (346)
T ss_pred CCEEee
Confidence 877654
No 386
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=78.67 E-value=26 Score=34.29 Aligned_cols=84 Identities=8% Similarity=-0.029 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----------ccccCCCHHHHHHHHHHHHHHhCCCcEEEE----ecCC-CCHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIG----NTGS-NSTR 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~Gst----------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~----gvg~-~st~ 137 (356)
-|.+.+.+-++.+.+.|+++|=++.+. |-...-..+.=.++++.+.+.+ .+||.+ |+.. .+..
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v--~~pVsvKiR~g~~~~~t~~ 151 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV--SIPVTVKHRIGIDDQDSYE 151 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc--CCceEEEEEeeeCCCcCHH
Confidence 477889999999889999999776432 2112223333345555555544 356654 4433 3457
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 018443 138 EAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~p 158 (356)
+++++++.++++|+|++.+..
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~ 172 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHA 172 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcC
Confidence 889999999999999998774
No 387
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.67 E-value=13 Score=34.39 Aligned_cols=170 Identities=17% Similarity=0.142 Sum_probs=100.3
Q ss_pred ccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcE-EEEecCC
Q 018443 55 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK-VIGNTGS 133 (356)
Q Consensus 55 ~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvp-Vi~gvg~ 133 (356)
.-.++++.+-. .|.+.....++.+++.|+..+=+.=+| +.-.+.++..++..+.+.| +++|+|+
T Consensus 13 ~~~~vi~Vvr~-------~~~~~a~~~~~al~~gGi~~iEiT~~t--------p~a~~~i~~l~~~~~~~~p~~~vGaGT 77 (222)
T PRK07114 13 KATGMVPVFYH-------ADVEVAKKVIKACYDGGARVFEFTNRG--------DFAHEVFAELVKYAAKELPGMILGVGS 77 (222)
T ss_pred HhCCEEEEEEc-------CCHHHHHHHHHHHHHCCCCEEEEeCCC--------CcHHHHHHHHHHHHHhhCCCeEEeeEe
Confidence 34567777542 488999999999999999998554333 2334455555544433333 7889987
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEe
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 213 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK 213 (356)
--+.+. ++.|.++||+.++. |.+ ..++.+|.++ |++|...|. +||..+.+-.+.. .--+|
T Consensus 78 Vl~~e~---a~~a~~aGA~FiVs--P~~----~~~v~~~~~~---------~~i~~iPG~-~TpsEi~~A~~~G-a~~vK 137 (222)
T PRK07114 78 IVDAAT---AALYIQLGANFIVT--PLF----NPDIAKVCNR---------RKVPYSPGC-GSLSEIGYAEELG-CEIVK 137 (222)
T ss_pred CcCHHH---HHHHHHcCCCEEEC--CCC----CHHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCC-CCEEE
Confidence 765554 56688899988763 544 4677777653 233334454 7776665555432 22367
Q ss_pred ecCch---h-hHhhhhC--CCeEEE--ecCcc--hhHhHHHHcCCceeecccccccH
Q 018443 214 ECVGN---D-RVEHYTG--NGIVVW--SGNDD--QCHDARWNHGATGVISVTSNLVP 260 (356)
Q Consensus 214 ~s~~d---~-~i~~~~~--~~~~v~--~G~d~--~~l~~~l~~Ga~G~is~~~n~~P 260 (356)
.--.+ . .++.+.. +++.++ .|-+. .-+..++..|+.++-. .++++|
T Consensus 138 lFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~-Gs~L~~ 193 (222)
T PRK07114 138 LFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGM-GSKLIP 193 (222)
T ss_pred ECcccccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEE-ChhhcC
Confidence 54322 2 3444322 344444 35542 2345568888776543 345555
No 388
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=78.43 E-value=24 Score=30.50 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 135 STREAIHATEQGFAVG-MHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 135 st~~ai~lar~a~~~G-adavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+.++.++.++.+.++| ......+-|-+...+.+++.+..+.+.+.
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKEL 179 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHc
Confidence 4577777888888888 43332222323234667777777766654
No 389
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=78.37 E-value=38 Score=32.61 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecCC------------CCH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGS------------NST 136 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg~------------~st 136 (356)
+|...-...+...++.|.+.+.+=|| .|+.+|=.+..+.+++.+.. .+.| +..+++ ++.
T Consensus 84 LDHg~~~e~i~~ai~~GftSVM~DgS-----~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~p 158 (285)
T PRK07709 84 LDHGSSFEKCKEAIDAGFTSVMIDAS-----HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADP 158 (285)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCH
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 137 REAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y---~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+++.++.+.- |+|++.+.-=.- ++..+.==++-.++|.+. .|++++ -|..++.+.+++..++
T Consensus 159 eeA~~Fv~~T---gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLH-----GgSG~~~e~~~~ai~~ 225 (285)
T PRK07709 159 AECKHLVEAT---GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLH-----GGTGIPTADIEKAISL 225 (285)
T ss_pred HHHHHHHHHh---CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEe-----CCCCCCHHHHHHHHHc
No 390
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.31 E-value=31 Score=30.86 Aligned_cols=100 Identities=8% Similarity=-0.039 Sum_probs=53.5
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEc-cCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHH
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVG-GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 137 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~-GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~ 137 (356)
+++.+.+|.+ ....++...+.|++-+-+. |..|+.+.-..-++ ++.+.+... ..++ +-.|+.+.+
T Consensus 105 ~~~~~~~~~t---------~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~---i~~l~~~~~-~~~i-~v~GGI~~~ 170 (206)
T TIGR03128 105 VQVDLINVKD---------KVKRAKELKELGADYIGVHTGLDEQAKGQNPFED---LQTILKLVK-EARV-AVAGGINLD 170 (206)
T ss_pred EEEEecCCCC---------hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHH---HHHHHHhcC-CCcE-EEECCcCHH
Confidence 5556667755 2233444466799977654 33344332222222 223333332 2333 222343332
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV 176 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~v 176 (356)
. ++.+.+.|+|++.+..-.|...+..+..+.++++
T Consensus 171 n----~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 171 T----IPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred H----HHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 2 4456789999999987777666777766666653
No 391
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.24 E-value=57 Score=30.16 Aligned_cols=82 Identities=13% Similarity=-0.006 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc--CC
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV--GM 151 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~--Ga 151 (356)
|.++....++++++.|..-+...++..+ ..+..+|.+-++.+.+..+-...++...+..+.++..+.++...+. ..
T Consensus 102 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~--~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (269)
T cd06287 102 SAATARMLLEHLRAQGARQIALIVGSAR--RNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDL 179 (269)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEeCCcc--cccHHHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCC
Confidence 4778899999999999988866654433 3366778888777777543222223222345666777777666443 46
Q ss_pred CEEEEc
Q 018443 152 HAALHI 157 (356)
Q Consensus 152 davlv~ 157 (356)
+++++.
T Consensus 180 ~ai~~~ 185 (269)
T cd06287 180 DALCVP 185 (269)
T ss_pred CEEEEc
Confidence 888875
No 392
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=78.22 E-value=10 Score=37.23 Aligned_cols=66 Identities=23% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHHHHCCC--CEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 80 DLVNMQIVNGA--EGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 80 ~~v~~li~~Gv--~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-vg~~st~~ai~lar~a~~~Gadavlv 156 (356)
.-++.++++|+ |.|.+=.+.| ++-+ -.++++...+..+ .+|||+| |+ +.+-++++.++|+|++.+
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g--h~~~---~~e~I~~ir~~~p-~~~vi~g~V~------t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG--HSDS---VINMIQHIKKHLP-ETFVIAGNVG------TPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC--chHH---HHHHHHHHHhhCC-CCeEEEEecC------CHHHHHHHHHcCcCEEEE
Confidence 44566778855 9888766653 2222 3334666665553 5789997 76 455667778899999876
Q ss_pred c
Q 018443 157 I 157 (356)
Q Consensus 157 ~ 157 (356)
-
T Consensus 168 g 168 (326)
T PRK05458 168 G 168 (326)
T ss_pred C
Confidence 4
No 393
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=78.16 E-value=49 Score=29.38 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCE
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 153 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gada 153 (356)
|.+.....++.+++.|++.+-+--++. ...+.++.+.+..+ + +.+|.|..-+.+ .++.+.++|+|+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~--------~~~~~i~~l~~~~~-~--~~iGag~v~~~~---~~~~a~~~Ga~~ 79 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP--------GALEAIRALRKEFP-E--ALIGAGTVLTPE---QADAAIAAGAQF 79 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh--------hHHHHHHHHHHHCC-C--CEEEEEeCCCHH---HHHHHHHcCCCE
Confidence 688899999999999999987754433 24446666666554 2 566766665555 445667799999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC-CCEEEEeecCch--h-hHhhhh--CC
Q 018443 154 ALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVGN--D-RVEHYT--GN 227 (356)
Q Consensus 154 vlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~-pnivGiK~s~~d--~-~i~~~~--~~ 227 (356)
++. |. +..++.++-+.. ..|++ | |+. +++.+.+..+. ..++++ +.... . .+.... -+
T Consensus 80 i~~--p~----~~~~~~~~~~~~--~~~~i----~---gv~-t~~e~~~A~~~Gad~i~~-~p~~~~g~~~~~~l~~~~~ 142 (190)
T cd00452 80 IVS--PG----LDPEVVKAANRA--GIPLL----P---GVA-TPTEIMQALELGADIVKL-FPAEAVGPAYIKALKGPFP 142 (190)
T ss_pred EEc--CC----CCHHHHHHHHHc--CCcEE----C---CcC-CHHHHHHHHHCCCCEEEE-cCCcccCHHHHHHHHhhCC
Confidence 963 32 234455443332 13443 3 444 67666555543 456665 22211 1 122221 12
Q ss_pred --CeEEEecCcchhHhHHHHcCCceeeccc
Q 018443 228 --GIVVWSGNDDQCHDARWNHGATGVISVT 255 (356)
Q Consensus 228 --~~~v~~G~d~~~l~~~l~~Ga~G~is~~ 255 (356)
.+-...|-+..-+..++..|++|+..+.
T Consensus 143 ~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 143 QVRFMPTGGVSLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CCeEEEeCCCCHHHHHHHHHCCCEEEEEch
Confidence 2333446654445556788988776543
No 394
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=78.02 E-value=15 Score=34.35 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
...+++++.+.|++.+++....+... ....-.++++.+.+.+ ++||++|=|-.|.+++.++ .+.|++.+++-
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~----~~~Ga~~vivg 103 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKL----LRAGADKVSIN 103 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHH----HHcCCCEEEEC
Confidence 44566667789999999988776532 3334566677776665 5799997777667666555 44699999988
Q ss_pred CCCCCC
Q 018443 158 NPYYGK 163 (356)
Q Consensus 158 pP~y~~ 163 (356)
...+..
T Consensus 104 t~~~~~ 109 (254)
T TIGR00735 104 TAAVKN 109 (254)
T ss_pred hhHhhC
Confidence 776643
No 395
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=78.00 E-value=21 Score=40.99 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.=|.+-+.++++.+.+.|++.|.+.-++| .|++.+-.++++.+.+.+ ++|+=+++ +++.--++.-.-.|.++||
T Consensus 685 ~~~l~y~~~~ak~l~~~Gad~I~ikDt~G---ll~P~~~~~Lv~~lk~~~--~~pi~~H~-Hdt~Gla~an~laA~eaGa 758 (1143)
T TIGR01235 685 KYDLKYYTNLAVELEKAGAHILGIKDMAG---LLKPAAAKLLIKALREKT--DLPIHFHT-HDTSGIAVASMLAAVEAGV 758 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcC---CcCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCCcHHHHHHHHHHhCC
Confidence 34788899999999999999999999999 489999999999999887 47887776 4467778888888999999
Q ss_pred CEEEEcC-CCCCCCCHHHHHHHHHHH
Q 018443 152 HAALHIN-PYYGKTSLEGLISHFDSV 176 (356)
Q Consensus 152 davlv~p-P~y~~~s~~~l~~y~~~v 176 (356)
|.+=..- +.-..+++..+...+..+
T Consensus 759 d~vD~ai~gl~G~ts~p~~e~~v~~L 784 (1143)
T TIGR01235 759 DVVDVAVDSMSGLTSQPSLGAIVAAL 784 (1143)
T ss_pred CEEEecchhhcCCCCCHhHHHHHHHH
Confidence 9995544 444445554444333333
No 396
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=77.99 E-value=51 Score=32.83 Aligned_cols=135 Identities=15% Similarity=0.121 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCccc----ccC-----------CCHHHHHHHHHHHHH----HhCCCc
Q 018443 72 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTGE----GQL-----------MSWDEHIMLIGHTVN----CFGASV 125 (356)
Q Consensus 72 ~ID~~~l~~~v~~-------li~~Gv~Gl~v~GstGE----~~~-----------Lt~eEr~~li~~~~~----~~~grv 125 (356)
+++.+.+++.++. -+++|-|||=+=|..|- |.+ =|.|.|.++...+++ .++...
T Consensus 138 ~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~ 217 (363)
T COG1902 138 ELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADF 217 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3666666666654 45689999999888772 111 135777766655555 445555
Q ss_pred EEEEecC--------CCCHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCC-HHHH-HHHHHH----HHhc--CCeEEEeCC
Q 018443 126 KVIGNTG--------SNSTREAIHATEQGFAVG-MHAALHINPYYGKTS-LEGL-ISHFDS----VLSM--GPTIIYNVP 188 (356)
Q Consensus 126 pVi~gvg--------~~st~~ai~lar~a~~~G-adavlv~pP~y~~~s-~~~l-~~y~~~----va~~--~PiilYn~P 188 (356)
||.+=++ +.+.++++++++..++.| +|.+-+.-+.+.+.. ...- ..|+.. +... .|++.
T Consensus 218 ~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~---- 293 (363)
T COG1902 218 PVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIA---- 293 (363)
T ss_pred eEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEE----
Confidence 6654332 346779999999999999 799999888764311 1100 223333 3333 58775
Q ss_pred CCCCCCCCHHHHHHHhcC--CCEEEE
Q 018443 189 SRTGQDIPPRVIHTMAQS--PNLAGV 212 (356)
Q Consensus 189 ~~tG~~ls~~~l~~La~~--pnivGi 212 (356)
+|.--+++..+++.+. --+||+
T Consensus 294 --~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 294 --VGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred --eCCCCCHHHHHHHHHcCCCCEEEe
Confidence 3546778999888855 345554
No 397
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=77.94 E-value=62 Score=30.43 Aligned_cols=105 Identities=12% Similarity=0.023 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.-|.+...+++..+++.|++-|=++|..++ .=..+|..+++..+.+.+ ++|+.+-+. +.+...+-.+++ .|+
T Consensus 22 ~~~~d~~~~~A~~~~~~GAdiIDIG~~~~~--~~~~ee~~r~v~~i~~~~--~~piSIDT~--~~~v~e~aL~~~--~G~ 93 (252)
T cd00740 22 AEDYDEALDVARQQVEGGAQILDLNVDYGG--LDGVSAMKWLLNLLATEP--TVPLMLDST--NWEVIEAGLKCC--QGK 93 (252)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHhc--CCcEEeeCC--cHHHHHHHHhhC--CCC
Confidence 468899999999999999999999886652 123556666666555443 567654443 333222222222 288
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018443 152 HAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 187 (356)
Q Consensus 152 davlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~ 187 (356)
+-+--+.-. ..++.+.+-+..+++. .|+++-+.
T Consensus 94 ~iINsIs~~---~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 94 CVVNSINLE---DGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred cEEEeCCCC---CCccccHHHHHHHHHhCCCEEEecc
Confidence 866655421 1123344444555555 68877665
No 398
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=77.93 E-value=51 Score=33.77 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=80.0
Q ss_pred CcccccCCCCCCCCcchh--cccCCcccc-ccCceeE------eeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 018443 28 PQAAIIPNYHLPMRSFEV--KNRTSAEDI-KALRLIT------AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGT 98 (356)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~Gvi~------al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~Gs 98 (356)
...-...|+.+|-....- --+++.+.+ ++.| -| -+-|-+++.--+.-+.+.+++..+... +|=+====.
T Consensus 118 ~~~lrL~Dl~lP~~~~~~F~GP~fGI~g~R~~lg-RP~~~~~pL~gtiiKPklGLsp~~~a~~~ye~~~G-gD~IKDDE~ 195 (443)
T PRK13475 118 VEYAKMHDFYVPPRYLELFDGPSTDISDLWRVLG-RPVKDGGYIAGTIIKPKLGLRPEPFAEACYDFWLG-GDFIKNDEP 195 (443)
T ss_pred cceeEEEEecCCHHHHhcCCCCCCchhhHHHHcC-CCcccCCceEEEecCccccCCHHHHHHHHHHHHhc-CCccccccc
Confidence 334555666666444311 112333343 2444 22 344556666558899999998887764 343210012
Q ss_pred cccccCCCHHHHHHHHHHHHHHhC---CCcEE-EEecCCCCHHHHHHHHHHHHHc-CCC----EEEEc
Q 018443 99 TGEGQLMSWDEHIMLIGHTVNCFG---ASVKV-IGNTGSNSTREAIHATEQGFAV-GMH----AALHI 157 (356)
Q Consensus 99 tGE~~~Lt~eEr~~li~~~~~~~~---grvpV-i~gvg~~st~~ai~lar~a~~~-Gad----avlv~ 157 (356)
-........+||...+..+++.+. |+.++ .+++++.+++|.+++++.+++. |++ ++|+-
T Consensus 196 l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vmv~ 263 (443)
T PRK13475 196 QGNQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANITADDHYEMIARGEYILETFGENADHVAFLVD 263 (443)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCCCCCHHHHHHHHHHHHHhcCCCccceEEEEc
Confidence 345667789999988877776442 34454 5689888899999999999998 988 55543
No 399
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=77.91 E-value=25 Score=36.68 Aligned_cols=142 Identities=12% Similarity=0.131 Sum_probs=80.2
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-vg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
..-++.|+++|+|-|++=.+.|. | ..-.+.++.+.+..+ .++||+| |.+ .+-++++.++|||+|.+.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~----~-~~~~~~i~~ik~~~p-~~~vi~g~v~t------~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD----S-IYQLEMIKYIKKTYP-ELDVIGGNVVT------MYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----c-HHHHHHHHHHHHhCC-CCcEEEecCCC------HHHHHHHHHcCcCEEEEC
Confidence 35577788999999988776554 2 222345555555443 5788875 643 355778888999999774
Q ss_pred C-CCCCCCC---------HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCEEEEeecCchh---h
Q 018443 158 N-PYYGKTS---------LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---R 220 (356)
Q Consensus 158 p-P~y~~~s---------~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~--~pnivGiK~s~~d~---~ 220 (356)
- |-+...+ +...+..+.++++. .|||. --|+.-+-+..+.|+- ..-.+|=-....++ .
T Consensus 318 ~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIa-----dGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~ 392 (505)
T PLN02274 318 MGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIA-----DGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGE 392 (505)
T ss_pred CCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcc
Confidence 2 2222111 22244456666665 46553 2466666777777872 33334433333322 1
Q ss_pred HhhhhCCCeEEEecCcc
Q 018443 221 VEHYTGNGIVVWSGNDD 237 (356)
Q Consensus 221 i~~~~~~~~~v~~G~d~ 237 (356)
.....+..+..|-|-..
T Consensus 393 ~~~~~g~~~k~yrgmgs 409 (505)
T PLN02274 393 YFYQDGVRVKKYRGMGS 409 (505)
T ss_pred eeeeCCeEEEEEeccch
Confidence 11112445677777643
No 400
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.89 E-value=36 Score=35.09 Aligned_cols=102 Identities=7% Similarity=0.019 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEEecC-----CCCHHHHHHHHHHHHH
Q 018443 75 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG-----SNSTREAIHATEQGFA 148 (356)
Q Consensus 75 ~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~gvg-----~~st~~ai~lar~a~~ 148 (356)
.+..+..++..+++|++.+-+.-+..|. +-++.+++.++ ....|.+.++ ..+.+..+++++.+.+
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd~---------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALNDI---------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCHH---------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 3566778899999999999888777762 22333444332 1223433221 1256889999999999
Q ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEe
Q 018443 149 VGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYN 186 (356)
Q Consensus 149 ~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn 186 (356)
+|+|.+.+.- ..+..++.++.+.++++-+. .||-++-
T Consensus 165 ~Gad~I~i~D-t~G~l~P~~v~~Lv~~lk~~~~vpI~~H~ 203 (467)
T PRK14041 165 MGVDSICIKD-MAGLLTPKRAYELVKALKKKFGVPVEVHS 203 (467)
T ss_pred cCCCEEEECC-ccCCcCHHHHHHHHHHHHHhcCCceEEEe
Confidence 9999877654 45667889999999999876 5665543
No 401
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=77.85 E-value=8.4 Score=36.24 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC--------HHHHHHHHHHHH
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS--------TREAIHATEQGF 147 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s--------t~~ai~lar~a~ 147 (356)
+.+.++++++-+.|.+.|=+.-.|- .|+.++|.++++.+.+ ....|+.-+|.-+ +++-|+.+++.-
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti---~l~~~~r~~~I~~~~~---~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dL 157 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTI---DLPEEERLRLIRKAKE---EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDL 157 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS------HHHHHHHHHHHCC---TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCce---eCCHHHHHHHHHHHHH---CCCEEeecccCCCchhcccCCHHHHHHHHHHHH
Confidence 4678899999999999996644433 6899999999886653 3467888887543 456788899999
Q ss_pred HcCCCEEEEcCC
Q 018443 148 AVGMHAALHINP 159 (356)
Q Consensus 148 ~~Gadavlv~pP 159 (356)
++||+.|++-.-
T Consensus 158 eAGA~~ViiEar 169 (244)
T PF02679_consen 158 EAGADKVIIEAR 169 (244)
T ss_dssp HHTECEEEE--T
T ss_pred HCCCCEEEEeee
Confidence 999999998654
No 402
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=77.71 E-value=18 Score=34.59 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=61.0
Q ss_pred CEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH
Q 018443 91 EGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI 170 (356)
Q Consensus 91 ~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~ 170 (356)
.-.++..+.+..+.-...+- ++...+..+....++..-+..+....++..+.+-..|+|++++.|+ +.+.+.
T Consensus 35 ~i~~~~~~~~~~f~~~~~~g---~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~-----d~~~~~ 106 (322)
T COG1879 35 TIGVVVPTLGNPFFQAVRKG---AEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPV-----DPDALT 106 (322)
T ss_pred eEEEEeccCCChHHHHHHHH---HHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCC-----ChhhhH
Confidence 34455555555333222221 3334443333234455556688999999999999999999999987 567777
Q ss_pred HHHHHHHhc-CCeEEEeCCC
Q 018443 171 SHFDSVLSM-GPTIIYNVPS 189 (356)
Q Consensus 171 ~y~~~va~~-~PiilYn~P~ 189 (356)
.-.+...++ .||+.+|.+.
T Consensus 107 ~~v~~a~~aGIpVv~~d~~~ 126 (322)
T COG1879 107 PAVKKAKAAGIPVVTVDSDI 126 (322)
T ss_pred HHHHHHHHCCCcEEEEecCC
Confidence 788888888 7999999853
No 403
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=77.69 E-value=18 Score=35.82 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc--------------cc--------------------------cCCCHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTG--------------EG--------------------------QLMSWDEHIML 113 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstG--------------E~--------------------------~~Lt~eEr~~l 113 (356)
|.+.++.++++..+.|+++|++.--+- |- ..++++ .
T Consensus 129 d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 204 (344)
T cd02922 129 DRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWD----D 204 (344)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHH----H
Confidence 778999999999999999998843221 11 112332 2
Q ss_pred HHHHHHHhCCCcEEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 114 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 114 i~~~~~~~~grvpVi~-gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
++.+.+.. ++||++ ||+ + .+-++.+.++|+|+|.+..
T Consensus 205 i~~l~~~~--~~PvivKgv~--~----~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 205 IKWLRKHT--KLPIVLKGVQ--T----VEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHhc--CCcEEEEcCC--C----HHHHHHHHHcCCCEEEEEC
Confidence 33344333 578777 453 2 5667888999999999986
No 404
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=77.66 E-value=54 Score=29.66 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE-e---------cCCCCHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-N---------TGSNSTREAIHAT 143 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~-g---------vg~~st~~ai~la 143 (356)
|.+.....++.++..+++|+++.+...+ . +.+ ...++||+. + |+.+........+
T Consensus 40 ~~~~~~~~i~~~~~~~~dgiii~~~~~~-----~-------~~~---~~~gipvv~~~~~~~~~~~~V~~d~~~~g~~~~ 104 (265)
T cd06291 40 DPEKEREYLEMLRQNQVDGIIAGTHNLG-----I-------EEY---ENIDLPIVSFDRYLSENIPIVSSDNYEGGRLAA 104 (265)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCcC-----H-------HHH---hcCCCCEEEEeCCCCCCCCeEeechHHHHHHHH
Confidence 3456678889999999999999876422 0 111 122455432 2 3444566667788
Q ss_pred HHHHHcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHh-c-CC--eEEEeCCCCCCCCCCHHHHHHHh-cCCCEEEEeecC
Q 018443 144 EQGFAVGMHAALHINPYYG-KTSLEGLISHFDSVLS-M-GP--TIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKECV 216 (356)
Q Consensus 144 r~a~~~Gadavlv~pP~y~-~~s~~~l~~y~~~va~-~-~P--iilYn~P~~tG~~ls~~~l~~La-~~pnivGiK~s~ 216 (356)
++..+.|...+.++..... ..+..+-.+-|++..+ . .+ .+.+..... ..-..+.+.++. +++.+.+|=-++
T Consensus 105 ~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ai~~~~ 181 (265)
T cd06291 105 EELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQENFD--DAEKKEEIKELLEEYPDIDGIFASN 181 (265)
T ss_pred HHHHHcCCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChheeecccc--chHHHHHHHHHHhCCCCCCEEEECC
Confidence 8888889988887754443 2333343444454443 3 22 222221110 000234555555 566666665443
No 405
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=77.51 E-value=7.5 Score=34.58 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=48.3
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 102 GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 102 ~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
...++.+||+++++.++....+++.++-..-..+.++.-++.+.+.+.|..|+|+=.|
T Consensus 128 l~~~p~~eR~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~ 185 (202)
T PF01068_consen 128 LLDLPYEERRELLEELLEPPPPRIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDP 185 (202)
T ss_dssp CTTSCHHHHHHHHHHHBG-BTSSEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEET
T ss_pred eeeccHHHHHHHHHHhhccCCCceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECC
Confidence 5678999999999999965667777776666678899999999999999999999654
No 406
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=77.29 E-value=18 Score=34.72 Aligned_cols=109 Identities=15% Similarity=0.032 Sum_probs=78.3
Q ss_pred eeecccCC-CC-CCCHHHHHHHHHHHHHC---CCC---EEEEccCcccccCCCHHHHHHHHHHHHHHhCC--CcEEEEec
Q 018443 62 AIKTPYLP-DG-RFDLEAYDDLVNMQIVN---GAE---GMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNT 131 (356)
Q Consensus 62 al~TPf~~-dg-~ID~~~l~~~v~~li~~---Gv~---Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g--rvpVi~gv 131 (356)
.+-.||.. |. +.|.+-+.++++...+. |++ -|-++-|+| .+++.+-.++++.+.+..+. ++++=++
T Consensus 140 ~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG---~a~P~~v~~~~~~l~~~~~~~~~~~~~~H- 215 (284)
T cd07942 140 DWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVE---VATPNVYADQIEWFCRNLSRRESVIISLH- 215 (284)
T ss_pred eEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEcccccc---ccCHHHHHHHHHHHHHhcCCCCCceEEEE-
Confidence 45567753 32 59999999999999876 555 688888999 67888888999888877654 2333333
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018443 132 GSNSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 174 (356)
Q Consensus 132 g~~st~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~ 174 (356)
.+++.--+++-+-.|.++|++.+-..+=-.. ...-|+++.+++
T Consensus 216 ~Hnd~G~a~AN~laA~~aG~~~id~~~~g~GeRaGN~~~E~lv~~l~ 262 (284)
T cd07942 216 PHNDRGTGVAAAELALLAGADRVEGTLFGNGERTGNVDLVTLALNLY 262 (284)
T ss_pred ecCCCchHHHHHHHHHHhCCCEEEeeCccCCccccchhHHHHHHHHH
Confidence 5778889999999999999999875432111 233455665553
No 407
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=77.27 E-value=33 Score=30.10 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEE---------------EecCCCCHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI---------------GNTGSNSTR 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi---------------~gvg~~st~ 137 (356)
-|.+.....++.+++.++++++..++..+... +.+.+. ..++|++ ..++.....
T Consensus 42 ~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~--------~~~~~~---~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~ 110 (269)
T cd01391 42 SDPERALEALRDLIQQGVDGIIGPPSSSSALA--------VVELAA---AAGIPVVSLDATAPDLTGYPYVFRVGPDNEQ 110 (269)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCHHHHH--------HHHHHH---HcCCcEEEecCCCCccCCCceEEEEcCCcHH
Confidence 34467888888888999999988776544221 222221 1234443 334444556
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG 180 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~ 180 (356)
..-.++++..+.|..-+.++.+... .......+.|++..+..
T Consensus 111 ~~~~~~~~l~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~ 152 (269)
T cd01391 111 AGEAAAEYLAEKGWKRVALIYGDDG-AYGRERLEGFKAALKKA 152 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCc-chhhHHHHHHHHHHHhc
Confidence 6777888888888777766654332 34455666777666653
No 408
>PLN02826 dihydroorotate dehydrogenase
Probab=77.12 E-value=27 Score=35.35 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC----cccccCCCHHHHHHHHHHHHHHh-------CCCcEEEEecCCCC-HHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQLMSWDEHIMLIGHTVNCF-------GASVKVIGNTGSNS-TREAIH 141 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~Gs----tGE~~~Lt~eEr~~li~~~~~~~-------~grvpVi~gvg~~s-t~~ai~ 141 (356)
..+.+...++.+.+ .+|.+.+|=| .|.-.....+.-.++++.+.+.. ..++||++=++-.- .++..+
T Consensus 202 ~~~Dy~~~~~~~~~-~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ 280 (409)
T PLN02826 202 AAADYVQGVRALSQ-YADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLED 280 (409)
T ss_pred cHHHHHHHHHHHhh-hCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHH
Confidence 35667777776643 5899988754 24433444566667777665442 24689999887544 457888
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCC
Q 018443 142 ATEQGFAVGMHAALHINPYYGKT 164 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~~ 164 (356)
.++.+.+.|+|++.+++-.+..+
T Consensus 281 ia~~a~~~G~dGIi~~NTt~~r~ 303 (409)
T PLN02826 281 IAAVALALGIDGLIISNTTISRP 303 (409)
T ss_pred HHHHHHHcCCCEEEEEcccCcCc
Confidence 99999999999999998766443
No 409
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=77.10 E-value=42 Score=31.92 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=71.6
Q ss_pred eEeeecccCCCC----CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE-ecC-C
Q 018443 60 ITAIKTPYLPDG----RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NTG-S 133 (356)
Q Consensus 60 i~al~TPf~~dg----~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~-gvg-~ 133 (356)
..+..+|-.++- ..|.+.+..-.+--.+.|+|=+=+. -||-. +-++.+++.++ +||++ |=. .
T Consensus 146 ~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-ytg~~---------e~F~~vv~~~~--vpVviaGG~k~ 213 (265)
T COG1830 146 LVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-YTGDP---------ESFRRVVAACG--VPVVIAGGPKT 213 (265)
T ss_pred eEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-CCCCh---------HHHHHHHHhCC--CCEEEeCCCCC
Confidence 344466655443 5666666665555567888877543 22221 33444555443 78654 433 3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 177 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va 177 (356)
.+.+++++..+.+-+.|+.++.+---.|.+..++.+..-..+|.
T Consensus 214 ~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Iv 257 (265)
T COG1830 214 ETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIV 257 (265)
T ss_pred CChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHh
Confidence 48999999999999999999999988898888888777766664
No 410
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=76.89 E-value=21 Score=34.24 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=50.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHH----HHHHHhCC-CcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIG----HTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~----~~~~~~~g-rvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
+.++++.+++.|++++++.-..+....+|.++..+.+. .+++.++. ..+++.++.++.. .......+.|+|
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~----~~~~~l~~~~~d 245 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGDTA----PILELMADLGAD 245 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCCch----hHHHHHHHhCCC
Confidence 45666777888999999988777777789887776553 33333322 3577777665433 445556678888
Q ss_pred EEEE
Q 018443 153 AALH 156 (356)
Q Consensus 153 avlv 156 (356)
.+.+
T Consensus 246 ~~~~ 249 (330)
T cd03465 246 VFSI 249 (330)
T ss_pred eEee
Confidence 7664
No 411
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=76.85 E-value=23 Score=35.26 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccC-CCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 149 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~-Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~ 149 (356)
..++.+.+.+.++...+.|+.-+.+.| ||... .+.+.-.++++.+.+... .+. +.++..+.++ .+..+++
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvg--Ge~p~~~~~e~l~~~i~~Ik~~~p-~i~--i~~g~lt~e~----l~~Lk~a 172 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLT--GEHEAKVGVDYIRRALPIAREYFS-SVS--IEVQPLSEEE----YAELVEL 172 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEee--CCCCCCCCHHHHHHHHHHHHHhCC-Cce--eccCCCCHHH----HHHHHHc
Confidence 568999999999999999999998766 88776 677888888887776542 222 2444444433 3777889
Q ss_pred CCCEEEEcC
Q 018443 150 GMHAALHIN 158 (356)
Q Consensus 150 Gadavlv~p 158 (356)
|++.+.+-.
T Consensus 173 Gv~r~~i~l 181 (371)
T PRK09240 173 GLDGVTVYQ 181 (371)
T ss_pred CCCEEEEEE
Confidence 999998654
No 412
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=76.80 E-value=36 Score=32.57 Aligned_cols=50 Identities=10% Similarity=-0.062 Sum_probs=30.1
Q ss_pred HHHHHHCCCCEEEEccCccccc-----CCCHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNT 131 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~-----~Lt~eEr~~li~~~~~~~~-grvpVi~gv 131 (356)
++..+++|++.+.+..+++|.+ .+|.+|-.+.+..+++.++ ....|-+++
T Consensus 80 ie~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 80 LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4555677888887777777654 3556666666666665443 234444444
No 413
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=76.72 E-value=47 Score=30.91 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=94.8
Q ss_pred eeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCC--cEEEEecCCCCH
Q 018443 59 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTGSNST 136 (356)
Q Consensus 59 vi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~gr--vpVi~gvg~~st 136 (356)
+-.+.++=| +.|.-..+.=....+..++.|++=|=+.=.-|..-+-.++.=.+-++.+++.++++ ++||.-++-.+.
T Consensus 61 ~~v~tVigF-P~G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ 139 (228)
T COG0274 61 VRVCTVIGF-PLGANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTD 139 (228)
T ss_pred eEEEEecCC-CCCCChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH
Confidence 336666767 56777777777777888889988776666777777778888888888888888764 678888888888
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCEEEEeec
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKEC 215 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~-~pnivGiK~s 215 (356)
++-+...+.+.++|||.|=-..=++ +..-+++.+.-+.+ +..-+|||-|
T Consensus 140 ee~~~A~~i~~~aGAdFVKTSTGf~------------------------------~~gAT~edv~lM~~~vg~~vgvKaS 189 (228)
T COG0274 140 EEKRKACEIAIEAGADFVKTSTGFS------------------------------AGGATVEDVKLMKETVGGRVGVKAS 189 (228)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCC------------------------------CCCCCHHHHHHHHHHhccCceeecc
Confidence 8888888888999998775443332 22345555555554 4667899988
Q ss_pred Cch
Q 018443 216 VGN 218 (356)
Q Consensus 216 ~~d 218 (356)
+|-
T Consensus 190 GGI 192 (228)
T COG0274 190 GGI 192 (228)
T ss_pred CCc
Confidence 874
No 414
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=76.69 E-value=16 Score=37.82 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCc-ccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~Gst-GE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~ 147 (356)
.|.++.+--++-++.+.+.|.+|+.++|.. || -....++..+++..+.+....+.|+ +.|+|.. .+ .-.+.
T Consensus 165 QGg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~~-e~y~~~~~~~ii~~~~~~Lp~dkPryL~GvG~P--~~----i~~~V 237 (487)
T PRK13533 165 QGGTYPDLREESAREASKLGFDVYPIGAVVPLM-ERYRYDDLVDVVLAAKRGLGPGAPVHLFGAGHP--MM----FALAV 237 (487)
T ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCccccc-ccCCHHHHHHHHHHHHhhCCCCCceEEeCCCCH--HH----HHHHH
Confidence 689999999999999999999999988744 44 3346788899999988888777786 5799964 33 33455
Q ss_pred HcCCCEEEEcCC
Q 018443 148 AVGMHAALHINP 159 (356)
Q Consensus 148 ~~Gadavlv~pP 159 (356)
.+|+|-.=...|
T Consensus 238 ~lGvDlFD~v~p 249 (487)
T PRK13533 238 ALGCDLFDSAAY 249 (487)
T ss_pred HhCCCceeccHH
Confidence 678886655544
No 415
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=76.55 E-value=7.6 Score=36.72 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=58.1
Q ss_pred CCCcEEEEecCCCCH--------HHHHHHHHHHHHcCCCEEEEcC-CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC
Q 018443 122 GASVKVIGNTGSNST--------REAIHATEQGFAVGMHAALHIN-PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR 190 (356)
Q Consensus 122 ~grvpVi~gvg~~st--------~~ai~lar~a~~~Gadavlv~p-P~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~ 190 (356)
.++++||+-+-..|. .+..++|+.+++.||+++.+.. |.|+..+ .++.+++.+. .||+..|
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~----~~~l~~v~~~v~iPvl~kd---- 118 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS----LEYLRAARAAVSLPVLRKD---- 118 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC----HHHHHHHHHhcCCCEEeee----
Confidence 457899998843322 2468999999999999997744 6777777 5666667665 6999755
Q ss_pred CCCCCCHHHHHHHhcC-CCEEEEeecC
Q 018443 191 TGQDIPPRVIHTMAQS-PNLAGVKECV 216 (356)
Q Consensus 191 tG~~ls~~~l~~La~~-pnivGiK~s~ 216 (356)
+-+++-.+.+..+. ..++-+=.+.
T Consensus 119 --fi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 119 --FIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred --ecCCHHHHHHHHHcCCCEEEEEecc
Confidence 34555566666554 3555555554
No 416
>PRK00208 thiG thiazole synthase; Reviewed
Probab=76.52 E-value=69 Score=30.23 Aligned_cols=177 Identities=14% Similarity=0.048 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHHcC-CCE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVG-MHA 153 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g~~st~~ai~lar~a~~~G-ada 153 (356)
.++.-+.+-+.++|++-+.|.=--=.... +. ..+++.+- ..++.++-++ |+.+.+|+|..|+.|.+++ -+.
T Consensus 21 ~s~~~~~~ai~asg~~ivTvalrR~~~~~-~~---~~~~~~i~---~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~ 93 (250)
T PRK00208 21 PSPQVMQEAIEASGAEIVTVALRRVNLGQ-GG---DNLLDLLP---PLGVTLLPNTAGCRTAEEAVRTARLAREALGTNW 93 (250)
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEeecCCC-Cc---chHHhhcc---ccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCe
Confidence 33444555566788888776431111100 11 23333221 1366777776 6678899999999998874 455
Q ss_pred E---EEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCEE-------EEeecCchh-h
Q 018443 154 A---LHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLA-------GVKECVGND-R 220 (356)
Q Consensus 154 v---lv~pP~y~~~s~~~l~~y~~~va~~~-PiilYn~P~~tG~~ls~~~l~~La~~-pniv-------GiK~s~~d~-~ 220 (356)
| ++..|+|..++..+.++--+.+.+.. -++-|-.+ ++.+.++|++. +.++ |=.....++ .
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~-------d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~ 166 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD-------DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYN 166 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC-------CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHH
Confidence 4 34447887888889999888888773 34436433 35666777653 3333 211010011 1
Q ss_pred HhhhhC-CCeEEEecC----cchhHhHHHHcCCceeeccccccc---HHHHHHHH
Q 018443 221 VEHYTG-NGIVVWSGN----DDQCHDARWNHGATGVISVTSNLV---PGMMRELM 267 (356)
Q Consensus 221 i~~~~~-~~~~v~~G~----d~~~l~~~l~~Ga~G~is~~~n~~---P~~~~~l~ 267 (356)
+..... .++.|+.+. .+.... ++.+|++|++.+++-.- |..+.+-|
T Consensus 167 i~~i~e~~~vpVIveaGI~tpeda~~-AmelGAdgVlV~SAItka~dP~~ma~af 220 (250)
T PRK00208 167 LRIIIEQADVPVIVDAGIGTPSDAAQ-AMELGADAVLLNTAIAVAGDPVAMARAF 220 (250)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHH-HHHcCCCEEEEChHhhCCCCHHHHHHHH
Confidence 222111 345555432 233433 48999999998887665 65554433
No 417
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=76.51 E-value=19 Score=35.43 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=54.8
Q ss_pred CcchhcccCCccccccCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCc-----c---c-ccCCCHHHHH
Q 018443 41 RSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTT-----G---E-GQLMSWDEHI 111 (356)
Q Consensus 41 ~~~~~~~~~~~~~~~~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~Gst-----G---E-~~~Lt~eEr~ 111 (356)
.+..+|||+- .+|+.+-+..+|... +.+.++.+...+.| -|+++.|.+ | + ...+..++..
T Consensus 8 g~~~lkNRiv---------~~p~~~~~~~~~~~~-~~~~~~y~~rA~gG-~glii~~~~~v~~~~~~~~~~~~~~~~~~i 76 (353)
T cd02930 8 GFTTLRNRVL---------MGSMHTGLEELDDGI-DRLAAFYAERARGG-VGLIVTGGFAPNEAGKLGPGGPVLNSPRQA 76 (353)
T ss_pred CCEEEccccE---------eCCccccccCCCCCC-HHHHHHHHHHhcCC-ceEEEEeeEEeCCcccCCCCCcccCCHHHH
Confidence 3456677743 334444555555443 23333333333344 455554432 1 1 1345566666
Q ss_pred HHHHHHHHHh-CCCcEEEEecCCC---------------------------C-------HHHHHHHHHHHHHcCCCEEEE
Q 018443 112 MLIGHTVNCF-GASVKVIGNTGSN---------------------------S-------TREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 112 ~li~~~~~~~-~grvpVi~gvg~~---------------------------s-------t~~ai~lar~a~~~Gadavlv 156 (356)
.-++.+++.+ ....+++++..+. + .++-.+-|+.|+++|+|+|-+
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666666644 2345676665211 1 223345667778888898866
Q ss_pred cC
Q 018443 157 IN 158 (356)
Q Consensus 157 ~p 158 (356)
..
T Consensus 157 h~ 158 (353)
T cd02930 157 MG 158 (353)
T ss_pred ec
Confidence 54
No 418
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.51 E-value=65 Score=29.92 Aligned_cols=179 Identities=17% Similarity=0.192 Sum_probs=100.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHH----HHH-------HHHHHHHHHhCCCcEEEEecCCC
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD----EHI-------MLIGHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~e----Er~-------~li~~~~~~~~grvpVi~gvg~~ 134 (356)
||---|.-|.+.+.+.++.+.+. ++.+=++=..+.-..=... -.+ ++++.+.+. -++|++.-+--+
T Consensus 8 ~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~--~~~Pl~lM~y~n 84 (244)
T PRK13125 8 VYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD--VSVPIILMTYLE 84 (244)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc--CCCCEEEEEecc
Confidence 44446888999999999998877 9988655444433221111 111 244444332 257875333222
Q ss_pred C-HHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCEE
Q 018443 135 S-TREAIHATEQGFAVGMHAALHIN-PYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLA 210 (356)
Q Consensus 135 s-t~~ai~lar~a~~~Gadavlv~p-P~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~-~pniv 210 (356)
. ...--++++.++++|+|++.+.. |+ .+.+++.++++.+.+. +..++.=+|. -+.+.++.+++ .+.++
T Consensus 85 ~~~~~~~~~i~~~~~~Gadgvii~dlp~---e~~~~~~~~~~~~~~~Gl~~~~~v~p~-----T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 85 DYVDSLDNFLNMARDVGADGVLFPDLLI---DYPDDLEKYVEIIKNKGLKPVFFTSPK-----FPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hhhhCHHHHHHHHHHcCCCEEEECCCCC---CcHHHHHHHHHHHHHcCCCEEEEECCC-----CCHHHHHHHHHhCCCEE
Confidence 1 33455678889999999999852 21 1235677777777776 4444444442 34678888774 67776
Q ss_pred --EEeecCch-------h---hHhhhhCCCeEEEecCc---chhHhHHHHcCCceeecccc
Q 018443 211 --GVKECVGN-------D---RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 211 --GiK~s~~d-------~---~i~~~~~~~~~v~~G~d---~~~l~~~l~~Ga~G~is~~~ 256 (356)
++.-..+. . +++++.. +..+..|.. ..-.......|+||++.|++
T Consensus 157 ~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 157 YYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred EEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 33322221 1 2233332 222333321 11222335799999999865
No 419
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=76.45 E-value=25 Score=33.81 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=68.0
Q ss_pred cCceeEeeecccCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCccccc--CCC-HHHHHHHHHHHHHHhCCCcEEEEec
Q 018443 56 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ--LMS-WDEHIMLIGHTVNCFGASVKVIGNT 131 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~-ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~--~Lt-~eEr~~li~~~~~~~~grvpVi~gv 131 (356)
..||+-..+=-|.+.|. .|.+...++++.+++.|++-|=++|-+..-. ..+ .+|..+++..+ +.......+.+.+
T Consensus 17 imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI-~~l~~~~~~~ISI 95 (282)
T PRK11613 17 VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV-EAIAQRFEVWISV 95 (282)
T ss_pred EEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEE
Confidence 35555433333876776 5999999999999999999998887444322 233 34555555433 3332222233455
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018443 132 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 187 (356)
Q Consensus 132 g~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~ 187 (356)
-+... +-++.|-++|||-+==+.- .+++++. +.+++. .|+++-+.
T Consensus 96 DT~~~----~va~~AL~~GadiINDI~g----~~d~~~~---~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 96 DTSKP----EVIRESAKAGAHIINDIRS----LSEPGAL---EAAAETGLPVCLMHM 141 (282)
T ss_pred ECCCH----HHHHHHHHcCCCEEEECCC----CCCHHHH---HHHHHcCCCEEEEcC
Confidence 44433 3345566679985521211 1223332 335665 68777654
No 420
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=76.43 E-value=23 Score=34.23 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018443 68 LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 68 ~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~ 147 (356)
.....++.+.+.+.++.+.+.|+..|.+.| ||- .+. .+-.++++.+.+. .+...+-+.+.+.-.. +.++...
T Consensus 44 ~~~~~ls~eei~~~i~~~~~~gi~~I~~tG--GEP-ll~-~~l~~li~~i~~~-~~~~~i~itTNG~ll~---~~~~~L~ 115 (331)
T PRK00164 44 PKEELLSLEEIERLVRAFVALGVRKVRLTG--GEP-LLR-KDLEDIIAALAAL-PGIRDLALTTNGYLLA---RRAAALK 115 (331)
T ss_pred CccccCCHHHHHHHHHHHHHCCCCEEEEEC--CCC-cCc-cCHHHHHHHHHhc-CCCceEEEEcCchhHH---HHHHHHH
Confidence 345679999999999999999999999887 994 443 4455666655432 1223444444333233 3566677
Q ss_pred HcCCCEEEEcCCC-----CC----CCCHHHHHHHHHHHHhc
Q 018443 148 AVGMHAALHINPY-----YG----KTSLEGLISHFDSVLSM 179 (356)
Q Consensus 148 ~~Gadavlv~pP~-----y~----~~s~~~l~~y~~~va~~ 179 (356)
++|.+.+-+..-. |. ..+-+.+++..+.+.+.
T Consensus 116 ~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~ 156 (331)
T PRK00164 116 DAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA 156 (331)
T ss_pred HcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC
Confidence 7899877665432 21 12446666666666665
No 421
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=76.40 E-value=35 Score=28.81 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=51.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-CCHHHHHHHHHHHHHcCCCEEE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~-~st~~ai~lar~a~~~Gadavl 155 (356)
.+..++..++.+++-+.+.+-.|. +.+.-+++++...+.--.+++|++|=.- ...++.-+-.+..+++|+|++.
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~----~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGH----GEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccC----CHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEE
Confidence 467788888889999887765555 5677778888776643236888876443 3445554555667889999876
No 422
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=76.31 E-value=25 Score=33.80 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCcEEE-EecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 112 MLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 112 ~li~~~~~~~~grvpVi-~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
++++.+.+.. ++||+ +..|+-.+.+-+ +.+.+.|||++++..=.+...++......|.+....
T Consensus 184 elLk~l~~~~--~iPVV~iAeGGI~Tpena---~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 184 ELVKETAKLG--RLPVVNFAAGGVATPADA---ALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HHHHHHHHhc--CCCeEEEEeCCCCCHHHH---HHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 5566666654 58997 577776444333 334468999999998777666777777777766554
No 423
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.21 E-value=14 Score=37.54 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHCC-CCEEEEc----cCcccccCCCHHHHHHHHHHHHHHh------CCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 83 NMQIVNG-AEGMIVG----GTTGEGQLMSWDEHIMLIGHTVNCF------GASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 83 ~~li~~G-v~Gl~v~----GstGE~~~Lt~eEr~~li~~~~~~~------~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
+...+.| +|.|++- |++|+...+ .-...+..+++.+ ..++||++. |+..+.+. +..|..+||
T Consensus 170 ~~A~~~g~aD~Ivvq~EAGGH~g~~~~~---~Llp~v~~l~d~v~~~~~~~~~ipViAA-GGI~tg~~---vaAA~alGA 242 (418)
T cd04742 170 ELARRVPVADDITVEADSGGHTDNRPLS---VLLPTIIRLRDELAARYGYRRPIRVGAA-GGIGTPEA---AAAAFALGA 242 (418)
T ss_pred HHHHhCCCCCEEEEcccCCCCCCCccHH---hHHHHHHHHHHHHhhccccCCCceEEEE-CCCCCHHH---HHHHHHcCC
Confidence 3344445 5888773 566654333 2222222223332 226888762 23334444 345677999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018443 152 HAALHINPYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 152 davlv~pP~y~~~s~~~l~~y~~~va~ 178 (356)
|+|++-.-+- ...+.+.-+.|++...
T Consensus 243 d~V~~GT~fl-at~Ea~~s~~~K~~L~ 268 (418)
T cd04742 243 DFIVTGSINQ-CTVEAGTSDAVKDLLQ 268 (418)
T ss_pred cEEeeccHHH-hCccccCCHHHHHHHH
Confidence 9999876433 3345566777777653
No 424
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=76.14 E-value=65 Score=29.72 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=53.8
Q ss_pred cCceeEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE------
Q 018443 56 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG------ 129 (356)
Q Consensus 56 ~~Gvi~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~------ 129 (356)
-.| +..++++++.+.+-|.+....+++.+++.+++|+++.++.. +.++. ++.+.+. +..+|++
T Consensus 28 ~~g-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~-----~~~~~---~~~l~~~--~~p~V~i~~~~~~ 96 (280)
T cd06303 28 ELN-IPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSL-----RHRKL---IERVLAS--GKTKIILQNITTP 96 (280)
T ss_pred HcC-CcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCch-----hhHHH---HHHHHhC--CCCeEEEeCCCCC
Confidence 455 23345566555556778888999999999999999876432 11222 2333221 1122333
Q ss_pred -----------ecCCCCHHHHHHHHHHHHH--cCCCEEEEc
Q 018443 130 -----------NTGSNSTREAIHATEQGFA--VGMHAALHI 157 (356)
Q Consensus 130 -----------gvg~~st~~ai~lar~a~~--~Gadavlv~ 157 (356)
.|+..+.+..-..+++..+ .|..-+.++
T Consensus 97 ~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l 137 (280)
T cd06303 97 VKAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAML 137 (280)
T ss_pred ccccccCCCceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2344455566777787777 777666555
No 425
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=76.13 E-value=53 Score=31.18 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHHcC----
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVG---- 150 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g~~st~~ai~lar~a~~~G---- 150 (356)
.++.-+-+-+.++|++-+.|.=--=...... ....+++.+- ..++.++-++ |+.+.+|++..|+.|.+++
T Consensus 27 ~s~~~~~~ai~aSg~evvTvalRR~~~~~~~--~~~~~l~~i~---~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~ 101 (267)
T CHL00162 27 KSLKDAIQSIEASGCEIVTVAIRRLNNNLLN--DNSNLLNGLD---WNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLG 101 (267)
T ss_pred CCHHHHHHHHHHhCCcEEEEEEEEeccCcCC--CcchHHHhhc---hhccEECCcCcCCCCHHHHHHHHHHHHHHhcccc
Confidence 3444455555678988877643111100000 1123333321 1366777776 6678999999999999876
Q ss_pred ---CCEE---EEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeecC----c--
Q 018443 151 ---MHAA---LHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV----G-- 217 (356)
Q Consensus 151 ---adav---lv~pP~y~~~s~~~l~~y~~~va~~~-PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s~----~-- 217 (356)
-+.| ++-.|.|..|+..|.++--+.+.+.. -|+-|-+| ++-+-++|.+.....=+=..+ +
T Consensus 102 ~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~-------D~v~a~rLed~Gc~aVMPlgsPIGSg~G 174 (267)
T CHL00162 102 QEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINA-------DPMLAKHLEDIGCATVMPLGSPIGSGQG 174 (267)
T ss_pred ccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCC-------CHHHHHHHHHcCCeEEeeccCcccCCCC
Confidence 4544 34467888889999999999998873 67777544 356677787654433222222 1
Q ss_pred --hh-hHhhh-hCCCeEEEecC----cchhHhHHHHcCCceeecccccc
Q 018443 218 --ND-RVEHY-TGNGIVVWSGN----DDQCHDARWNHGATGVISVTSNL 258 (356)
Q Consensus 218 --d~-~i~~~-~~~~~~v~~G~----d~~~l~~~l~~Ga~G~is~~~n~ 258 (356)
++ .+... .+.++.|+.+. .+.... ++++|+||+...++-+
T Consensus 175 l~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~-AmElGaDgVL~nSaIa 222 (267)
T CHL00162 175 LQNLLNLQIIIENAKIPVIIDAGIGTPSEASQ-AMELGASGVLLNTAVA 222 (267)
T ss_pred CCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHH-HHHcCCCEEeecceee
Confidence 11 12211 13455555432 223333 4899999998766544
No 426
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=76.12 E-value=44 Score=34.12 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=66.9
Q ss_pred CCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC--CCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC----
Q 018443 89 GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG---- 162 (356)
Q Consensus 89 Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~--grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~---- 162 (356)
.++.|+++|.| ...|+.++..++++.+.+..+ ....+-+-+.-.+ -+-+..+..+++|++.+.+-.-.+.
T Consensus 114 ~i~~iy~GGGT--Ps~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~--~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGT--PTALSAEDLARLITALREYLPLAPDCEITLEGRING--FDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCc--cccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCc--CCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 47788887755 567999999999999988653 2333322221111 1345666777789999998877652
Q ss_pred ----C-CCHHHHHHHHHHHHhcC--Ce---EEEeCCCCC
Q 018443 163 ----K-TSLEGLISHFDSVLSMG--PT---IIYNVPSRT 191 (356)
Q Consensus 163 ----~-~s~~~l~~y~~~va~~~--Pi---ilYn~P~~t 191 (356)
+ .+.+++.+.++.+.+.. .| +||..|.-|
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 2 46778888888877652 33 688888643
No 427
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=76.10 E-value=14 Score=37.88 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred HHHHHHHHHCC---------------CCEEEE----ccCcccccCCCHHHHHHHHHHHHHHh------CCCcEEEEecCC
Q 018443 79 DDLVNMQIVNG---------------AEGMIV----GGTTGEGQLMSWDEHIMLIGHTVNCF------GASVKVIGNTGS 133 (356)
Q Consensus 79 ~~~v~~li~~G---------------v~Gl~v----~GstGE~~~Lt~eEr~~li~~~~~~~------~grvpVi~gvg~ 133 (356)
++.++.|.+.| +|.|++ +|+||++..++ -...+..+++.+ ..++||++. |+
T Consensus 157 ~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve~EAGGHtg~~~~~~---Llp~i~~lrd~v~~~~~y~~~VpViAA-GG 232 (444)
T TIGR02814 157 AHILQKLLAEGRITREEAELARRVPVADDICVEADSGGHTDNRPLVV---LLPAIIRLRDTLMRRYGYRKPIRVGAA-GG 232 (444)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEeccCCCCCCCCcHHH---HHHHHHHHHHHHhhcccCCCCceEEEe-CC
Confidence 34566666666 577766 45666665542 222222222322 236788762 22
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Q 018443 134 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 177 (356)
Q Consensus 134 ~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va 177 (356)
..+.++ +..|..+|||+|++-.-+ ....+.+.-+.|++..
T Consensus 233 I~t~~~---vaAAlaLGAdgV~~GT~f-lat~Esgas~~~K~~L 272 (444)
T TIGR02814 233 IGTPEA---AAAAFMLGADFIVTGSVN-QCTVEAGTSDNVKKLL 272 (444)
T ss_pred CCCHHH---HHHHHHcCCcEEEeccHH-HhCccccCCHHHHHHH
Confidence 333443 445678999999987533 2333444555566554
No 428
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=76.06 E-value=12 Score=33.97 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
.|.+....+++.+++.|+.-+=+.=+| ++-.++++...+..+ + +++|+|+--+ .+.++.|.++||+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t--------~~a~~~I~~l~~~~p-~--~~vGAGTV~~---~e~a~~a~~aGA~ 82 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT--------PNALEAIEALRKEFP-D--LLVGAGTVLT---AEQAEAAIAAGAQ 82 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS--------TTHHHHHHHHHHHHT-T--SEEEEES--S---HHHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC--------ccHHHHHHHHHHHCC-C--CeeEEEeccC---HHHHHHHHHcCCC
Confidence 456778999999999999998654443 345677777777764 3 6778876544 4567788889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeecCch-----hhHhhhhC-
Q 018443 153 AALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTG- 226 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s~~d-----~~i~~~~~- 226 (356)
.++. |.+ .+++.+|.++-- .|+ ..|. +||..+.+..+.. ..-+|.--.+ ..++.+..
T Consensus 83 FivS--P~~----~~~v~~~~~~~~--i~~-------iPG~-~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p 145 (196)
T PF01081_consen 83 FIVS--PGF----DPEVIEYAREYG--IPY-------IPGV-MTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP 145 (196)
T ss_dssp EEEE--SS------HHHHHHHHHHT--SEE-------EEEE-SSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT
T ss_pred EEEC--CCC----CHHHHHHHHHcC--Ccc-------cCCc-CCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc
Confidence 8775 443 577888766421 222 2343 7776666655432 2336754332 22333322
Q ss_pred -CCeEEEe--cCcchhHhHHHHcCCceeecccccccHHH
Q 018443 227 -NGIVVWS--GNDDQCHDARWNHGATGVISVTSNLVPGM 262 (356)
Q Consensus 227 -~~~~v~~--G~d~~~l~~~l~~Ga~G~is~~~n~~P~~ 262 (356)
+++.++. |-+..-+..++..|+.++..| ++++|+.
T Consensus 146 ~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~G-s~L~~~~ 183 (196)
T PF01081_consen 146 FPDLPFMPTGGVNPDNLAEYLKAGAVAVGGG-SWLFPKD 183 (196)
T ss_dssp TTT-EEEEBSS--TTTHHHHHTSTTBSEEEE-SGGGSHH
T ss_pred CCCCeEEEcCCCCHHHHHHHHhCCCEEEEEC-chhcCHH
Confidence 4555543 444333456788998877554 4566654
No 429
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=75.89 E-value=35 Score=32.89 Aligned_cols=124 Identities=12% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecCCCCHH-----------
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNSTR----------- 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg~~st~----------- 137 (356)
+|...-...+.+.++.|.+.+.+=|| .|+.||=.++.+.+++.+.. .+.| +..+|+..-.
T Consensus 81 LDHg~~~e~i~~ai~~GFtSVM~DgS-----~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T 155 (286)
T PRK12738 81 LDHHESLDDIRRKVHAGVRSAMIDGS-----HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLT 155 (286)
T ss_pred CCCCCCHHHHHHHHHcCCCeEeecCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCC
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y---~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+--+..+.+++.|+|++-+.--.- ++..+.=-++-.++|.+. .|++++= |..++.+.+++..+.
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHG-----gSG~~~e~~~kai~~ 224 (286)
T PRK12738 156 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHG-----ASDVPDEFVRRTIEL 224 (286)
T ss_pred CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHc
No 430
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=75.73 E-value=29 Score=32.84 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHhCC-CcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeE
Q 018443 106 SWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTI 183 (356)
Q Consensus 106 t~eEr~~li~~~~~~~~g-rvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~Pii 183 (356)
..+=...+.+.+.+++.. ...++...+..+.+...+..+.....++|++++.++. ...+...++.+.+. .|++
T Consensus 9 ~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~-----~~~~~~~l~~~~~~~iPvV 83 (302)
T TIGR02634 9 RLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN-----GQVLSNAVQEAKDEGIKVV 83 (302)
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----hhHHHHHHHHHHHCCCeEE
Confidence 333334444444343322 3566666566677888889999999999999987642 23345556666555 7999
Q ss_pred EEeCC
Q 018443 184 IYNVP 188 (356)
Q Consensus 184 lYn~P 188 (356)
+.|.+
T Consensus 84 ~~d~~ 88 (302)
T TIGR02634 84 AYDRL 88 (302)
T ss_pred EecCc
Confidence 99865
No 431
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=75.71 E-value=21 Score=34.94 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHHHHHC-CCCEEEEccCcc--cccCCCHHHHHHHH----HHHHHHhCC--CcEEEEecCCCCHHHHHHHHHHHHH
Q 018443 78 YDDLVNMQIVN-GAEGMIVGGTTG--EGQLMSWDEHIMLI----GHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 78 l~~~v~~li~~-Gv~Gl~v~GstG--E~~~Lt~eEr~~li----~~~~~~~~g--rvpVi~gvg~~st~~ai~lar~a~~ 148 (356)
+.++++.++++ |++++.+.-+-| ....||.++..+.+ +.+++.++. ..|++.+.-++.+ .+.....+
T Consensus 157 ~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~----~~l~~~~e 232 (321)
T cd03309 157 KLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAA----SLVPSMAE 232 (321)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcH----HHHHHHHH
Confidence 44555566777 999999854221 23679999988776 355555543 3577776544332 23444455
Q ss_pred cCCCEEEEc
Q 018443 149 VGMHAALHI 157 (356)
Q Consensus 149 ~Gadavlv~ 157 (356)
.|+|.+.+-
T Consensus 233 ~g~dvl~~d 241 (321)
T cd03309 233 MGVDSWNVV 241 (321)
T ss_pred cCCCEEEec
Confidence 688877753
No 432
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.70 E-value=61 Score=29.19 Aligned_cols=132 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE-e----------cCCCCHHHHHH
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-N----------TGSNSTREAIH 141 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~-g----------vg~~st~~ai~ 141 (356)
-|.+...+.++.+++.+++|+++.+...+ +. ..++.+. ..++|++. + ++....+.+-.
T Consensus 39 ~~~~~~~~~i~~~~~~~vdgiii~~~~~~----~~----~~~~~~~---~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~ 107 (268)
T cd06289 39 EDVERQEQLLSTMLEHGVAGIILCPAAGT----SP----DLLKRLA---ESGIPVVLVAREVAGAPFDYVGPDNAAGARL 107 (268)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEeCCCCc----cH----HHHHHHH---hcCCCEEEEeccCCCCCCCEEeecchHHHHH
Confidence 46778889999999999999999875432 11 1233222 23456542 2 22233455666
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--C---CeEEEeCCCCCCCCCCHHHHHHHh-cCCCEEEEeec
Q 018443 142 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--G---PTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKEC 215 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~---PiilYn~P~~tG~~ls~~~l~~La-~~pnivGiK~s 215 (356)
.+++..+.|..-+.++.+.-......+..+-|.+..+. . +..++..+. ...-..+.+.++. ++|++.||=-+
T Consensus 108 ~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~i~~~ 185 (268)
T cd06289 108 ATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPP--SRQGGAEAVAQLLDLPPRPTAIVCF 185 (268)
T ss_pred HHHHHHHCCCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCc--chhhHHHHHHHHHcCCCCCCEEEEc
Confidence 66777778877777664322222233344444444433 1 222322221 1112235566655 56777777654
Q ss_pred Cc
Q 018443 216 VG 217 (356)
Q Consensus 216 ~~ 217 (356)
+.
T Consensus 186 ~~ 187 (268)
T cd06289 186 ND 187 (268)
T ss_pred Cc
Confidence 43
No 433
>PRK04302 triosephosphate isomerase; Provisional
Probab=75.68 E-value=40 Score=30.81 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHH
Q 018443 105 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF 173 (356)
Q Consensus 105 Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~ 173 (356)
-+.++-.++++.+.+. ..++||++|-| -++.+.++. +.+.|+||+++..-.....+..++.+-|
T Consensus 155 ~~~~~i~~~~~~ir~~-~~~~pvi~Ggg-I~~~e~~~~---~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 155 AKPEVVEDAVEAVKKV-NPDVKVLCGAG-ISTGEDVKA---ALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred CCHHHHHHHHHHHHhc-cCCCEEEEECC-CCCHHHHHH---HHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 3455555555555543 24679998855 445554444 4578999999887655555555554433
No 434
>PRK08508 biotin synthase; Provisional
Probab=75.65 E-value=27 Score=33.26 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcE----EEEec-CCCCHHHHHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK----VIGNT-GSNSTREAIHATEQGFA 148 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvp----Vi~gv-g~~st~~ai~lar~a~~ 148 (356)
+++-+.+.++.+.+.+. ++-+..+.|.. +.|+-+++.++=++....++. ++-.+ ...+.++.++..+.|++
T Consensus 73 ~~e~~~ei~~~ik~~~p-~l~i~~s~G~~---~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~ 148 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVP-GLHLIACNGTA---SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKE 148 (279)
T ss_pred cHHHHHHHHHHHHhhCC-CcEEEecCCCC---CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 66777777777666543 33344455543 566666655543433332211 22233 23568888888888888
Q ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 149 VGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 149 ~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+|..--..+-+- ..-|.++++++...+.+-
T Consensus 149 ~Gi~v~sg~I~G-lGEt~ed~~~~l~~lr~L 178 (279)
T PRK08508 149 AGLGLCSGGIFG-LGESWEDRISFLKSLASL 178 (279)
T ss_pred cCCeecceeEEe-cCCCHHHHHHHHHHHHcC
Confidence 885322211111 245788899999888764
No 435
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=75.64 E-value=5.8 Score=39.06 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=71.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCC-CHHH--HHHHHHHHHHHhCCCcEEEE--ecCCCCHHHHHHHHHHHHHcCCC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLM-SWDE--HIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~L-t~eE--r~~li~~~~~~~~grvpVi~--gvg~~st~~ai~lar~a~~~Gad 152 (356)
..++..+..+.|+|++++-|.-+=++.= ..++ -..|+..+++.+++ +|||+ |+++ .+ -+..|..+||+
T Consensus 136 ~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~-iPViAAGGI~d---g~---~i~AAlalGA~ 208 (336)
T COG2070 136 TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAGGIAD---GR---GIAAALALGAD 208 (336)
T ss_pred CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC-CCEEEecCccC---hH---HHHHHHHhccH
Confidence 3567788889999999986652222211 1222 36788888888765 89987 4443 22 34456679999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCC---CCCHHHHHHHh
Q 018443 153 AALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQ---DIPPRVIHTMA 204 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P~~tG~---~ls~~~l~~La 204 (356)
+|.+-..|... .+...-+.|++..-. ..+++-+.+ +|. .+...+.++..
T Consensus 209 gVq~GT~Fl~t-~Ea~a~~~~K~~l~~a~~~Dtv~~~~~--~G~paR~i~~~~~~~~~ 263 (336)
T COG2070 209 GVQMGTRFLAT-KEADASDAYKQALLQATEDDTVLTKSF--TGKPARVLRNPLTEEYE 263 (336)
T ss_pred HHHhhhhhhcc-cccCCCHHHHHHHhcccccCeEEEccc--CCCcchhhCcHHHHhhh
Confidence 99999876642 334455777777543 356655543 333 34445555544
No 436
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=75.51 E-value=15 Score=32.38 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=56.2
Q ss_pred HHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 018443 83 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 162 (356)
Q Consensus 83 ~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~ 162 (356)
+-..+.|++|+-+.+. .+...+.++++ +.+ .++|++..+.+| ++.|.+.|+|.+.+.|-|-.
T Consensus 66 ~la~~~~~dGvHl~~~-----~~~~~~~r~~~-------~~~--~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T 127 (180)
T PF02581_consen 66 DLALELGADGVHLGQS-----DLPPAEARKLL-------GPD--KIIGASCHSLEE----AREAEELGADYVFLGPVFPT 127 (180)
T ss_dssp HHHHHCT-SEEEEBTT-----SSSHHHHHHHH-------TTT--SEEEEEESSHHH----HHHHHHCTTSEEEEETSS--
T ss_pred HHHHhcCCCEEEeccc-----ccchHHhhhhc-------ccc--eEEEeecCcHHH----HHHhhhcCCCEEEECCccCC
Confidence 3344577888876552 23344433332 222 377888888888 66677999999998864332
Q ss_pred --CCCHH-HHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 163 --KTSLE-GLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 163 --~~s~~-~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
+++.. -=.+.++++++. .|++.- | .++++.+.++.+
T Consensus 128 ~sk~~~~~~g~~~l~~~~~~~~~pv~Al------G-GI~~~~i~~l~~ 168 (180)
T PF02581_consen 128 SSKPGAPPLGLDGLREIARASPIPVYAL------G-GITPENIPELRE 168 (180)
T ss_dssp SSSSS-TTCHHHHHHHHHHHTSSCEEEE------S-S--TTTHHHHHH
T ss_pred CCCccccccCHHHHHHHHHhCCCCEEEE------c-CCCHHHHHHHHH
Confidence 23221 124456777765 566654 2 356777777764
No 437
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.50 E-value=15 Score=37.50 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHCCCCEEEEc---cC---cccccCCCHHHHHHHHHHHHHHh-CCCcEEEE--ecCCCCHHHHHHHHHHHHHcCCC
Q 018443 82 VNMQIVNGAEGMIVG---GT---TGEGQLMSWDEHIMLIGHTVNCF-GASVKVIG--NTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~---Gs---tGE~~~Lt~eEr~~li~~~~~~~-~grvpVi~--gvg~~st~~ai~lar~a~~~Gad 152 (356)
++.+++.|+++|-+. |+ |-+..-.... ....+..+++.+ ..++|||+ |+-. ..+ +..|-++||+
T Consensus 279 a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpviadGGi~~--~~d----i~kAla~GA~ 351 (450)
T TIGR01302 279 AKALIDAGADGLRVGIGPGSICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVIADGGIRY--SGD----IVKALAAGAD 351 (450)
T ss_pred HHHHHHhCCCEEEECCCCCcCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEEEeCCCCC--HHH----HHHHHHcCCC
Confidence 345677899999654 21 1111111111 223444444433 34789999 6643 222 4456778999
Q ss_pred EEEEcCC
Q 018443 153 AALHINP 159 (356)
Q Consensus 153 avlv~pP 159 (356)
+||+-.-
T Consensus 352 ~V~~G~~ 358 (450)
T TIGR01302 352 AVMLGSL 358 (450)
T ss_pred EEEECch
Confidence 9999754
No 438
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=75.49 E-value=58 Score=28.83 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcc---cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTG---EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstG---E~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~ 148 (356)
.+|+..+.+.++.+.+.|++.+=+----| +...++. ++++.+.+.+ +.++.+.+-.++. .+.++.+.+
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~----~~~~~i~~~~--~~~~~v~l~~~d~---~~~~~~~~~ 78 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGP----PVVKALRKHT--DLPLDVHLMVENP---ERYIEAFAK 78 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCH----HHHHHHHhhC--CCcEEEEeeeCCH---HHHHHHHHH
Confidence 58999999999999999999885521111 1111222 3444444443 2355455555555 345777779
Q ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEE---eec-Cch---h-
Q 018443 149 VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV---KEC-VGN---D- 219 (356)
Q Consensus 149 ~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~~pnivGi---K~s-~~d---~- 219 (356)
+|+|++.+..- .+ ++..++.+.+... .-+++--.|. -+.+.+.++.+....+++ ..+ ++. .
T Consensus 79 ~g~dgv~vh~~----~~-~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 79 AGADIITFHAE----AT-DHLHRTIQLIKELGMKAGVALNPG-----TPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred cCCCEEEECcc----ch-hhHHHHHHHHHHCCCeEEEEecCC-----CCHHHHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 99999876432 12 3444555544443 2222211121 135666766654554433 111 111 1
Q ss_pred ---hH---hhhhC---CCeEE--EecCcchhHhHHHHcCCceeecccccc
Q 018443 220 ---RV---EHYTG---NGIVV--WSGNDDQCHDARWNHGATGVISVTSNL 258 (356)
Q Consensus 220 ---~i---~~~~~---~~~~v--~~G~d~~~l~~~l~~Ga~G~is~~~n~ 258 (356)
.+ ++..+ .+..+ -.|-...-.......|++|++.|.+-+
T Consensus 149 ~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 149 VLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHh
Confidence 12 22221 12333 334443333344568999999886543
No 439
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=75.47 E-value=46 Score=33.66 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=67.1
Q ss_pred HHHHHHCCCCEEEEc-cCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 82 VNMQIVNGAEGMIVG-GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~-GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
++...+.|++.+.+. |.+++...... .+.++.+.+.. .+||++.-| .+. +.+..+.+.|||++.+..-.
T Consensus 124 ~~~a~~~GaD~I~~~pg~~~~~~~~~~---~~~l~~l~~~~--~iPI~a~GG-I~~----~n~~~~l~aGAdgv~vGsaI 193 (430)
T PRK07028 124 AVELEELGVDYINVHVGIDQQMLGKDP---LELLKEVSEEV--SIPIAVAGG-LDA----ETAAKAVAAGADIVIVGGNI 193 (430)
T ss_pred HHHHHhcCCCEEEEEeccchhhcCCCh---HHHHHHHHhhC--CCcEEEECC-CCH----HHHHHHHHcCCCEEEEChHH
Confidence 455567899988543 33333332222 23445554443 378766433 234 33566688899999999877
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 161 YGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 161 y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+...+..+..+.|++..+. .|.-+-.+ -..++++++++|.++
T Consensus 194 ~~~~d~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~~~~l~~~ 236 (430)
T PRK07028 194 IKSADVTEAARKIREAIDSGKPVKIDKF----KKSLDEEIREIFMQV 236 (430)
T ss_pred cCCCCHHHHHHHHHHHHhccCCcccccc----ccCCCHHHHHHhcCC
Confidence 7667777777777776655 45544332 224777888888753
No 440
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=75.46 E-value=77 Score=30.23 Aligned_cols=179 Identities=19% Similarity=0.239 Sum_probs=107.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCcccc----------------cCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG----------------QLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 133 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~----------------~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~ 133 (356)
-|.-|++...+.++.|+++|+|.|=++=-.+.- .-+|.+.-.++++.+.+. ..++|++.=+..
T Consensus 25 ~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~-~~~~Pivlm~Y~ 103 (265)
T COG0159 25 AGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK-GVKVPIVLMTYY 103 (265)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCEEEEEec
Confidence 577899999999999999999998653333221 246677777777766643 357887665544
Q ss_pred CC-HHHHH-HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCC-C
Q 018443 134 NS-TREAI-HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSP-N 208 (356)
Q Consensus 134 ~s-t~~ai-~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~p-n 208 (356)
|. ...-+ ++.+++++.|+|++++.- . ..|+-. .+...++. +-.|..=.| .-+.+.+++++++. .
T Consensus 104 Npi~~~Gie~F~~~~~~~GvdGlivpD--L---P~ee~~-~~~~~~~~~gi~~I~lvaP-----tt~~~rl~~i~~~a~G 172 (265)
T COG0159 104 NPIFNYGIEKFLRRAKEAGVDGLLVPD--L---PPEESD-ELLKAAEKHGIDPIFLVAP-----TTPDERLKKIAEAASG 172 (265)
T ss_pred cHHHHhhHHHHHHHHHHcCCCEEEeCC--C---ChHHHH-HHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHhCCC
Confidence 43 33333 358999999999999843 2 223322 33444443 444444444 24568888888654 3
Q ss_pred ---------EEEEeecCch---h---hHhhhhCCCeEEEecCc----chhHhHHHHcCCceeecccccccHHHHHHHHHc
Q 018443 209 ---------LAGVKECVGN---D---RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLVPGMMRELMFG 269 (356)
Q Consensus 209 ---------ivGiK~s~~d---~---~i~~~~~~~~~v~~G~d----~~~l~~~l~~Ga~G~is~~~n~~P~~~~~l~~a 269 (356)
+.|.+....+ . ++++++ +.-+..|.. ++.- ..... +||+|.|++ ++++.+.
T Consensus 173 FiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~-~v~~~-ADGVIVGSA------iV~~i~~ 242 (265)
T COG0159 173 FIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAA-QVAEA-ADGVIVGSA------IVKIIEE 242 (265)
T ss_pred cEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHH-HHHHh-CCeEEEcHH------HHHHHHh
Confidence 3444444221 1 344444 444445543 2332 23466 999999864 4555555
Q ss_pred C
Q 018443 270 G 270 (356)
Q Consensus 270 g 270 (356)
+
T Consensus 243 ~ 243 (265)
T COG0159 243 G 243 (265)
T ss_pred c
Confidence 4
No 441
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=75.43 E-value=13 Score=38.36 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHH------HHHHHHHHHHHHh-CCCcEEEE--ecCCCCHHHHHHHHHHHHHcCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWD------EHIMLIGHTVNCF-GASVKVIG--NTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~e------Er~~li~~~~~~~-~grvpVi~--gvg~~st~~ai~lar~a~~~Gad 152 (356)
+..+++.|+++|-++++.| ...-|.. =..+.+..+++.+ ..++|||+ |+.. ..+ +..|-.+|||
T Consensus 283 a~~l~~aGad~i~vg~g~g-s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~--~~d----i~kAla~GA~ 355 (486)
T PRK05567 283 ARALIEAGADAVKVGIGPG-SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRY--SGD----IAKALAAGAS 355 (486)
T ss_pred HHHHHHcCCCEEEECCCCC-ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCC--HHH----HHHHHHhCCC
Confidence 4566778999998765433 1111110 0223343444443 34689999 6643 333 3456678999
Q ss_pred EEEEcCCC
Q 018443 153 AALHINPY 160 (356)
Q Consensus 153 avlv~pP~ 160 (356)
++|+-..+
T Consensus 356 ~v~~G~~~ 363 (486)
T PRK05567 356 AVMLGSML 363 (486)
T ss_pred EEEECccc
Confidence 99987654
No 442
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=75.40 E-value=33 Score=35.65 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCC
Q 018443 142 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQ 193 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P~~tG~ 193 (356)
.+++|++.|. .+.+.++..++.+.+.+.+.++++.+..+- ..++|...|.
T Consensus 122 ~v~~a~~~g~-~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~-~i~l~DTvG~ 171 (494)
T TIGR00973 122 MVKYAKNFTD-DVEFSCEDAGRTEIPFLARIVEAAINAGAT-TINIPDTVGY 171 (494)
T ss_pred HHHHHHHcCC-eEEEEcCCCCCCCHHHHHHHHHHHHHcCCC-EEEeCCCCCC
Confidence 3344444443 344444444455555555555555544322 2334444454
No 443
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=75.33 E-value=19 Score=35.37 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHH--------HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE--------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eE--------r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
..-+..+++.|++++.+.++-|-. .-|... ....+..+++.. ++|||+-=|=.+..++. .|..+|
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G~~-~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~----KaLa~G 223 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPGKV-CITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIA----KSIRFG 223 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCCcc-cccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHH----HHHHhC
Confidence 344566778999998876554422 111111 233455555544 58998755444444433 456679
Q ss_pred CCEEEEcCCCC
Q 018443 151 MHAALHINPYY 161 (356)
Q Consensus 151 adavlv~pP~y 161 (356)
||+||+-.++.
T Consensus 224 A~aV~vG~~~~ 234 (326)
T PRK05458 224 ATMVMIGSLFA 234 (326)
T ss_pred CCEEEechhhc
Confidence 99999986654
No 444
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=75.28 E-value=39 Score=30.91 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018443 133 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 188 (356)
Q Consensus 133 ~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P 188 (356)
.++.+...+..+...+.++||+++.+. - .+.+.+..+.+.+. .|++.+|.+
T Consensus 40 ~~~~~~~~~~i~~l~~~~vdgiIi~~~-~----~~~~~~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 40 EGDQQGQLSIAENMINKGYKGLLFSPI-S----DVNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEECCC-C----hHHhHHHHHHHHHCCCeEEEECCC
Confidence 446677778888888889999987642 1 12223334555555 799999864
No 445
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=75.21 E-value=15 Score=35.99 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcc-Ccccc-------cCCCHHHHHHHHHHHHHHhCC-CcEEE-------EecCCCC
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG-------QLMSWDEHIMLIGHTVNCFGA-SVKVI-------GNTGSNS 135 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~-------~~Lt~eEr~~li~~~~~~~~g-rvpVi-------~gvg~~s 135 (356)
..+.+.+.++++.+.+.+. ++-+.+ |..|. -.++.++-+++-++=+....+ ..... ++.+..+
T Consensus 99 ~~~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~ 177 (343)
T TIGR03551 99 DLDGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLS 177 (343)
T ss_pred CCCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCC
Confidence 4678888888888887642 222222 32332 234554445555543332211 10111 1222347
Q ss_pred HHHHHHHHHHHHHcCCCE---EEEcCCCCCCCCHHHHHHHHHHHHhc-------CCeEEEe
Q 018443 136 TREAIHATEQGFAVGMHA---ALHINPYYGKTSLEGLISHFDSVLSM-------GPTIIYN 186 (356)
Q Consensus 136 t~~ai~lar~a~~~Gada---vlv~pP~y~~~s~~~l~~y~~~va~~-------~PiilYn 186 (356)
+++.++..+.|.++|... +++-.| -|.++..++...+.+- .+++.+|
T Consensus 178 ~~~~~~~i~~a~~~Gi~v~s~~i~G~~----Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~ 234 (343)
T TIGR03551 178 TAEWIEIIKTAHKLGIPTTATIMYGHV----ETPEHWVDHLLILREIQEETGGFTEFVPLP 234 (343)
T ss_pred HHHHHHHHHHHHHcCCcccceEEEecC----CCHHHHHHHHHHHHHhhHHhCCeeEEEecc
Confidence 888999999999999753 333322 4778888888887753 2567777
No 446
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=75.11 E-value=29 Score=33.71 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----HHHHHHhCC-CcEEEEecCCCCHHHHHHHHHHHHHcCCC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMH 152 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----~~~~~~~~g-rvpVi~gvg~~st~~ai~lar~a~~~Gad 152 (356)
+.++++.+++.|++++++.-..+....+|.++..+.+ +.+++.++. ..+.+.++.++. . .......+.|+|
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~-~---~~~~~l~~~g~d 257 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT-Q---PILRDIANNGCF 257 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc-h---hhHHHHHHhCCC
Confidence 5666777889999999988877777889999877665 444444321 124445554433 2 234445667888
Q ss_pred EEE
Q 018443 153 AAL 155 (356)
Q Consensus 153 avl 155 (356)
.+.
T Consensus 258 ~ls 260 (340)
T TIGR01463 258 GFS 260 (340)
T ss_pred EEe
Confidence 765
No 447
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=74.95 E-value=96 Score=31.08 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=77.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-CCcEEEE-ec------------
Q 018443 66 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIG-NT------------ 131 (356)
Q Consensus 66 Pf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-grvpVi~-gv------------ 131 (356)
||-+. .-....+...++.+.+.|.+||-+...-=--+..+.+||...++.+.+... ..+.|.. .+
T Consensus 23 ~~g~~-~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~ 101 (382)
T TIGR02631 23 PFGDA-TRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG 101 (382)
T ss_pred CCCCC-CCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC
Confidence 66432 223445667788888999999965432100123345566554444444332 1333221 21
Q ss_pred -CCCCH---HHHHH----HHHHHHHcCCCEEEEcCCCCCC-----CC-H---HHHHHHHHHHHhc-------CCeEEEeC
Q 018443 132 -GSNST---REAIH----ATEQGFAVGMHAALHINPYYGK-----TS-L---EGLISHFDSVLSM-------GPTIIYNV 187 (356)
Q Consensus 132 -g~~st---~~ai~----lar~a~~~Gadavlv~pP~y~~-----~s-~---~~l~~y~~~va~~-------~PiilYn~ 187 (356)
.+.+. +.+++ .++.|+++|+..+.+.+-.... .+ + +...+.++.+++. +.+.|=+.
T Consensus 102 las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 102 FTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 22233 33444 4467788999988776533211 11 1 3355555565542 24566555
Q ss_pred CCCC--CCC-CCHHHHHHHh---cCCCEEEEeecCch
Q 018443 188 PSRT--GQD-IPPRVIHTMA---QSPNLAGVKECVGN 218 (356)
Q Consensus 188 P~~t--G~~-ls~~~l~~La---~~pnivGiK~s~~d 218 (356)
|... ++- -+++...++. .+||++|+=...+.
T Consensus 182 p~~~~~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH 218 (382)
T TIGR02631 182 PNEPRGDILLPTVGHALAFIETLERPELFGLNPETGH 218 (382)
T ss_pred CCCCCcceecCCHHHHHHHHHHcCCccceeEEEechh
Confidence 5431 222 3455555544 46898777544443
No 448
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=74.83 E-value=63 Score=32.50 Aligned_cols=146 Identities=16% Similarity=0.259 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHCCC------CEEEEccCcccccCCCHHHHHHHHHHHHHH---hCCCcEEEEecCCC--------
Q 018443 72 RFDLEAYDDLVNMQIVNGA------EGMIVGGTTGEGQLMSWDEHIMLIGHTVNC---FGASVKVIGNTGSN-------- 134 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv------~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~---~~grvpVi~gvg~~-------- 134 (356)
-.+-....++++.|.+.|+ .|.+.||..|++..-+.+|-...+...... ..|+ .|++.-|.+
T Consensus 125 m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~-~vlit~g~t~E~iD~VR 203 (390)
T TIGR00521 125 MYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREFSPKEDLEGK-RVLITAGPTREPIDPVR 203 (390)
T ss_pred hcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHHHHHhhccccCCc-eEEEecCCccCCCCcee
Confidence 3445678888888888874 577778999999988888776655555432 3344 344433322
Q ss_pred -----CH-HHHHHHHHHHHHcCCCEEEEcC------CCCCC----CCHHHH-HHHHHHHHhcCCeEEEeC------CC-C
Q 018443 135 -----ST-REAIHATEQGFAVGMHAALHIN------PYYGK----TSLEGL-ISHFDSVLSMGPTIIYNV------PS-R 190 (356)
Q Consensus 135 -----st-~~ai~lar~a~~~Gadavlv~p------P~y~~----~s~~~l-~~y~~~va~~~PiilYn~------P~-~ 190 (356)
|+ .-....|+.+...|++.+++.- |.+.. .+.+++ .+-++++.....+++.+. |. .
T Consensus 204 ~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~ 283 (390)
T TIGR00521 204 FISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTV 283 (390)
T ss_pred eecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEcccccccccccc
Confidence 33 4678899999999999888653 22211 244555 333323322223333221 11 0
Q ss_pred -------CCC------CCCHHHHHHHhc-CCC--EEEEeecCch
Q 018443 191 -------TGQ------DIPPRVIHTMAQ-SPN--LAGVKECVGN 218 (356)
Q Consensus 191 -------tG~------~ls~~~l~~La~-~pn--ivGiK~s~~d 218 (356)
.+. .-.|+.+.+|.+ .|+ +||+|.++.+
T Consensus 284 ~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~~~~~lvgF~aEt~~ 327 (390)
T TIGR00521 284 FEGKIKKQGEELSLKLVKNPDIIAEVRKIKKHQVIVGFKAETND 327 (390)
T ss_pred ccccccccCCceeEEEEeCcHHHHHHHhhCCCcEEEEEEcCCCc
Confidence 011 234788888885 333 6999988765
No 449
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=74.71 E-value=8.7 Score=40.00 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHCCCCEEEEccCcc---cc--------cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 82 VNMQIVNGAEGMIVGGTTG---EG--------QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstG---E~--------~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
..++++.|+|+|.+...+| .. +.+|. ...+..+++ ..++|||+-=|=.+. ..+..|-++|
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~---i~~~~~~~~--~~~vpVIadGGI~~~----~di~kAla~G 373 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATA---VYKVASIAA--QHGVPVIADGGISNS----GHIVKALTLG 373 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCCcccH---HHHHHHHHH--hcCCeEEEeCCCCCH----HHHHHHHHcC
Confidence 4567789999998853222 11 11221 111222222 236899984333333 3345677799
Q ss_pred CCEEEEcCCCC
Q 018443 151 MHAALHINPYY 161 (356)
Q Consensus 151 adavlv~pP~y 161 (356)
||+||+-.-+.
T Consensus 374 A~~V~vGs~~~ 384 (505)
T PLN02274 374 ASTVMMGSFLA 384 (505)
T ss_pred CCEEEEchhhc
Confidence 99999986443
No 450
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=74.70 E-value=92 Score=30.79 Aligned_cols=137 Identities=14% Similarity=0.048 Sum_probs=79.1
Q ss_pred eEeeecccCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHH-
Q 018443 60 ITAIKTPYLPDGRF-DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR- 137 (356)
Q Consensus 60 i~al~TPf~~dg~I-D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~- 137 (356)
+|.+..|++ .|+- ..+--.+++.-.-+.|+.-- .|+.+=+ .++. |..+-++.+.+..+ +.|++++++.....
T Consensus 61 ~Pi~i~~Mt-Ggs~~~~~in~~La~~a~~~G~~~~--~Gs~~~~-~~~~-~~~~~~~~vr~~~p-~~p~~aNl~~~~~~~ 134 (352)
T PRK05437 61 APFLINAMT-GGSEKAKEINRKLAEAAEELGIAMG--VGSQRAA-LKDP-ELADSFSVVRKVAP-DGLLFANLGAVQLYG 134 (352)
T ss_pred CCEEecccC-CCChhHHHHHHHHHHHHHHcCCCeE--ecccHhh-ccCh-hhHHHHHHHHHHCC-CceEEeecCccccCC
Confidence 456667777 4543 33333666666666775433 2444221 3344 47777766666554 56999998876541
Q ss_pred H-HHHHHHHHHHcCCCEEEEcCCCC----C---CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 138 E-AIHATEQGFAVGMHAALHINPYY----G---KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 138 ~-ai~lar~a~~~Gadavlv~pP~y----~---~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
- .-+..+..+.+++|++-+-.+.- . ..+.+.+.+..+++.+. .||++=-. |..++++....|.+.
T Consensus 135 ~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~----g~g~s~~~a~~l~~~ 209 (352)
T PRK05437 135 YGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV----GFGISKETAKRLADA 209 (352)
T ss_pred CCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC----CCCCcHHHHHHHHHc
Confidence 1 11223334455788875543221 1 11334566777777775 69997653 445788888888753
No 451
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=74.67 E-value=20 Score=34.15 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----------------HHHHHHhCCCcEEEEecCCC
Q 018443 71 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----------------GHTVNCFGASVKVIGNTGSN 134 (356)
Q Consensus 71 g~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----------------~~~~~~~~grvpVi~gvg~~ 134 (356)
..+|.+.+.+.++.+.++ +-+++.| .|-...+..+=..++. ..+.....+++-|.+..++
T Consensus 113 ~~l~~~~l~~av~~L~~A--~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG- 188 (281)
T COG1737 113 NLLDEEALERAVELLAKA--RRIYFFG-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSG- 188 (281)
T ss_pred HhcCHHHHHHHHHHHHcC--CeEEEEE-echhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCC-
Confidence 468999999999999875 4444444 3333333222222221 2344444556656666655
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 018443 135 STREAIHATEQGFAVGMHAALHINPYYGK 163 (356)
Q Consensus 135 st~~ai~lar~a~~~Gadavlv~pP~y~~ 163 (356)
.+++.++.++.|++.|+.-|.++.....+
T Consensus 189 ~t~e~i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 189 YTREIVEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcCCCCCc
Confidence 69999999999999999999888765543
No 452
>PRK13404 dihydropyrimidinase; Provisional
Probab=74.65 E-value=23 Score=36.44 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 132 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg 132 (356)
.+++.++.+++.|+++|-+..+.+. ..++++|-.++++.+.+ .+.+|.+++-
T Consensus 136 ~~~~~v~~l~~~G~~~iKi~~~~~~-~~~~~~~l~~~~~~a~~---~g~~V~~Hae 187 (477)
T PRK13404 136 VLTEELPALIAQGYTSFKVFMTYDD-LKLDDRQILDVLAVARR---HGAMVMVHAE 187 (477)
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCC-CCCCHHHHHHHHHHHHh---cCCEEEEEeC
Confidence 3445577778889998876643222 66788877777765543 2445665553
No 453
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=74.62 E-value=89 Score=30.57 Aligned_cols=127 Identities=9% Similarity=0.018 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHH-CCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCC---HHHHHHHHHHHHHcC
Q 018443 75 LEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS---TREAIHATEQGFAVG 150 (356)
Q Consensus 75 ~~~l~~~v~~li~-~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~s---t~~ai~lar~a~~~G 150 (356)
.+.+.+.++++.+ .|+..|++.| ||-..++++.-.++++.+.+. +.-.-+=.|+..+. ..-+=++++..++.|
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~~L~~i-~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~ 220 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLKRLEEI-PHLVRLRIGTRLPVVIPQRITDELCELLASFE 220 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHHHHHhc-CCccEEEeecCCCccCchhcCHHHHHHHHhcC
Confidence 6888899998875 5899999888 998888876666777776653 22112223443221 122336666666778
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018443 151 MHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 151 adavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~ 205 (356)
..-+++.-=-...-..++..+-.+.+.++ .++.+.- +-.-|++=+++++.+|.+
T Consensus 221 ~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qt-vLl~gvnD~~~~l~~L~~ 275 (331)
T TIGR00238 221 LQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQS-VLLRGVNDRAQILAKLSI 275 (331)
T ss_pred CcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeec-ceECCcCCCHHHHHHHHH
Confidence 77766651111111225566666666666 4544443 334577788888888875
No 454
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=74.62 E-value=18 Score=35.51 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCCEEEEc---cCc-------ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018443 78 YDDLVNMQIVNGAEGMIVG---GTT-------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~---Gst-------GE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~ 147 (356)
....++.+++.|+++|.+. |++ |.... .+. ...+..+++.. ++|||+-=|-.+-.+.+ .|-
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~-~~~--l~ai~ev~~a~--~~pVIadGGIr~~~Di~----KAL 217 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTG-GWQ--LAALRWCAKAA--RKPIIADGGIRTHGDIA----KSI 217 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCC-chH--HHHHHHHHHhc--CCeEEEECCcCcHHHHH----HHH
Confidence 4556677888999999876 331 11111 111 23344444433 68998854444444443 345
Q ss_pred HcCCCEEEEcCCCC
Q 018443 148 AVGMHAALHINPYY 161 (356)
Q Consensus 148 ~~Gadavlv~pP~y 161 (356)
.+|||+||+..++-
T Consensus 218 a~GAd~Vmig~~~a 231 (321)
T TIGR01306 218 RFGASMVMIGSLFA 231 (321)
T ss_pred HcCCCEEeechhhc
Confidence 57999999996653
No 455
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=74.59 E-value=53 Score=27.95 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEE
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 156 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g-vg~~st~~ai~lar~a~~~Gadavlv 156 (356)
.++.++...+.+++-+.+.+-.|. +.+.-.++++...+.--..++|++| ......++.-+..+.++++|+|++.-
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~----~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGH----GEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEeccccc----CHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEEC
Confidence 467788888899999887666653 4555666777776643335566554 32334455555566778899998762
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018443 157 INPYYGKTSLEGLISHFDSVL 177 (356)
Q Consensus 157 ~pP~y~~~s~~~l~~y~~~va 177 (356)
| ..+.+++.+|.+.-.
T Consensus 117 --p---gt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 117 --P---GTPPEVVIADLKKDL 132 (134)
T ss_pred --c---CCCHHHHHHHHHHHh
Confidence 2 235688999887643
No 456
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.56 E-value=19 Score=34.05 Aligned_cols=159 Identities=15% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
..++...+.+.|++++.++-..- +.... .+.+..+.+.+ ++||+. -..-+..- .+..+.++|||++.+.
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~--~f~g~---~~~l~~v~~~v--~iPvl~--kdfi~~~~--qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDER--FFQGS---LEYLRAARAAV--SLPVLR--KDFIIDPY--QIYEARAAGADAILLI 140 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccc--cCCCC---HHHHHHHHHhc--CCCEEe--eeecCCHH--HHHHHHHcCCCEEEEE
Confidence 45667777789999997743221 11111 34444455444 689996 22222222 5888899999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCEEEEeecC-----chh----hHhhhhC
Q 018443 158 NPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKECV-----GND----RVEHYTG 226 (356)
Q Consensus 158 pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P~~tG~~ls~~~l~~La~-~pnivGiK~s~-----~d~----~i~~~~~ 226 (356)
.-.. +.+.+.+.++...+. +-+++-= -+.+.+.+..+ -+.++|+-.-+ .|. ++....+
T Consensus 141 ~~~l---~~~~l~~li~~a~~lGl~~lvev--------h~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p 209 (260)
T PRK00278 141 VAAL---DDEQLKELLDYAHSLGLDVLVEV--------HDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIP 209 (260)
T ss_pred eccC---CHHHHHHHHHHHHHcCCeEEEEe--------CCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCC
Confidence 7653 345666666666554 3333221 12334444444 36788874210 111 2222222
Q ss_pred CCeEEE--ecCc-chhHhHHHHcCCceeecccccc
Q 018443 227 NGIVVW--SGND-DQCHDARWNHGATGVISVTSNL 258 (356)
Q Consensus 227 ~~~~v~--~G~d-~~~l~~~l~~Ga~G~is~~~n~ 258 (356)
....++ +|-. ..-....+.+|++|++.|.+-.
T Consensus 210 ~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 210 SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 232222 3432 1112234678999998776644
No 457
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=74.43 E-value=87 Score=30.36 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC--CCCHHH----HHHHHHHHHhc
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG--KTSLEG----LISHFDSVLSM 179 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~--~~s~~~----l~~y~~~va~~ 179 (356)
++..+++++...++|+|++.+..|.-. -.|.+. +..|++.+.+.
T Consensus 179 ~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~ 228 (340)
T TIGR01463 179 LDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAY 228 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHH
Confidence 455667777777788888877777542 234433 33555666654
No 458
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.37 E-value=14 Score=33.74 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCC-HHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 157 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt-~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~ 157 (356)
..+++.+.+.|++.+.+..-++= ++ ......+++.+.+.+ .+||++|-|=.+.+++ +.+.+.|||.+++.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~---~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~----~~~~~~Gad~vvig 102 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA---KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDI----ERLLDLGVSRVIIG 102 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc---ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHH----HHHHHcCCCEEEEC
Confidence 34556666789999999854431 11 223356676676665 5799988776665554 44445899999876
Q ss_pred CCCC
Q 018443 158 NPYY 161 (356)
Q Consensus 158 pP~y 161 (356)
.-.+
T Consensus 103 s~~l 106 (234)
T cd04732 103 TAAV 106 (234)
T ss_pred chHH
Confidence 5433
No 459
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=74.29 E-value=54 Score=33.26 Aligned_cols=107 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcccccC-----CCHHHHHHHHHHHHHHhCC-CcEEEEec---CCCCHHHHHHHHHHHH
Q 018443 77 AYDDLVNMQIVNGAEGMIVGGTTGEGQL-----MSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQGF 147 (356)
Q Consensus 77 ~l~~~v~~li~~Gv~Gl~v~GstGE~~~-----Lt~eEr~~li~~~~~~~~g-rvpVi~gv---g~~st~~ai~lar~a~ 147 (356)
..++-++.++++|++.+.+..+|++.+. +|.+|-.+.+..+++.+.. .+.+.... .....+..++..+.+.
T Consensus 77 ~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~ 156 (409)
T COG0119 77 AIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAI 156 (409)
T ss_pred hHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHH
Q ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEE
Q 018443 148 AVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP--TII 184 (356)
Q Consensus 148 ~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~P--iil 184 (356)
+.|++.+-+.. .-+..++.+..+-++.+.+..| +.+
T Consensus 157 ~~ga~~i~l~D-TvG~~~P~~~~~~i~~l~~~v~~~~~l 194 (409)
T COG0119 157 EAGADRINLPD-TVGVATPNEVADIIEALKANVPNKVIL 194 (409)
T ss_pred HcCCcEEEECC-CcCccCHHHHHHHHHHHHHhCCCCCeE
No 460
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.28 E-value=34 Score=27.66 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
+.+++...+...+-+.+..+.++ +.+.=.++++.+.+...+++++++|=...+... +.+++.|+|++.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~----~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~-----~~~~~~G~D~~~ 107 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTT----HMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDF-----KFLKEIGVDAYF 107 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccc----cHHHHHHHHHHHHHcCCCCCeEEEECCCCChhH-----HHHHHcCCeEEE
Confidence 34555555666666665555344 223445555555444222555554433322111 355666776665
No 461
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=74.13 E-value=47 Score=31.48 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCC-CCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 78 YDDLVNMQIVNG-AEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 78 l~~~v~~li~~G-v~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
++..++..+..| +||+++.| +||+-+..+.-+ .+....+.+||++|-|- +.+..-++.++ +|++.
T Consensus 159 ~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~-------~vr~~~~~~PvllggGv-t~eNv~e~l~~-----adGvi 225 (257)
T TIGR00259 159 LESIALDTVERGLADAVILSGKTTGTEVDLELLK-------LAKETVKDTPVLAGSGV-NLENVEELLSI-----ADGVI 225 (257)
T ss_pred HHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHH-------HHHhccCCCeEEEECCC-CHHHHHHHHhh-----CCEEE
Q ss_pred EcCCC--CC----CCCHHHHHHHHHHH
Q 018443 156 HINPY--YG----KTSLEGLISHFDSV 176 (356)
Q Consensus 156 v~pP~--y~----~~s~~~l~~y~~~v 176 (356)
+..=+ -. +-+.+-+.+|.+.+
T Consensus 226 VgS~~K~~G~~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 226 VATTIKKDGVFNNFVDQARVSQFVEKV 252 (257)
T ss_pred ECCCcccCCccCCCcCHHHHHHHHHHH
No 462
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.03 E-value=8.1 Score=38.15 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=74.4
Q ss_pred ccccCCCCCCCCCcccccCCCCCCCCcc-hhcccCCc---cccccCceeEeeecccC-CCCCCCHHHHHHHHHHHHHCCC
Q 018443 16 LLRCRKNRKWRPPQAAIIPNYHLPMRSF-EVKNRTSA---EDIKALRLITAIKTPYL-PDGRFDLEAYDDLVNMQIVNGA 90 (356)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~Gvi~al~TPf~-~dg~ID~~~l~~~v~~li~~Gv 90 (356)
...|+|+-.|--. ...+..|+..=+ ++++.+.. .|++ +..=+.|.+ .+|.++.+....+++.+.+.|+
T Consensus 177 p~~N~R~D~yGGs---lenR~r~~~eii~~vr~~vg~~~~~~~~----v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~Gv 249 (353)
T cd04735 177 PHSNRRTDEWGGS---LENRMRFPLAVVKAVQEVIDKHADKDFI----LGYRFSPEEPEEPGIRMEDTLALVDKLADKGL 249 (353)
T ss_pred CccCCCCcccCCc---HHHHHHHHHHHHHHHHHHhccccCCCce----EEEEECcccccCCCCCHHHHHHHHHHHHHcCC
Confidence 3366777665422 344555554444 44555441 1211 111112222 1356788889999999999999
Q ss_pred CEEEEccCcccccCCC-HHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Q 018443 91 EGMIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT 164 (356)
Q Consensus 91 ~Gl~v~GstGE~~~Lt-~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~ 164 (356)
+-|-|.+.+-+..... .......++.+.+.++.++|||+ +|...+.+.. +.+.+.|+|.|++.-|....|
T Consensus 250 D~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~-~Ggi~t~e~a---e~~l~~gaD~V~~gR~liadP 320 (353)
T cd04735 250 DYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA-VGSINTPDDA---LEALETGADLVAIGRGLLVDP 320 (353)
T ss_pred CEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE-ECCCCCHHHH---HHHHHcCCChHHHhHHHHhCc
Confidence 9998866433222111 11123444555555555788774 5665433333 333333899998877665443
No 463
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=73.98 E-value=50 Score=33.68 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHH-----CCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC--CCcEEEEecCCCCHHHHHHHHHHHHH
Q 018443 76 EAYDDLVNMQIV-----NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFA 148 (356)
Q Consensus 76 ~~l~~~v~~li~-----~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~--grvpVi~gvg~~st~~ai~lar~a~~ 148 (356)
+.+.+-++.+.+ .++.-|++.| |+...|+.+.-.++++.+.+... ..+.+-+-+...+ -+-+.++..++
T Consensus 84 ~~L~~Ei~~~~~~~~~~~~v~~I~fgG--GtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~--l~~e~l~~lk~ 159 (455)
T TIGR00538 84 DALEKEIALVAPLFDGNRHVSQLHWGG--GTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRY--ITKDVIDALRD 159 (455)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEECC--CCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCc--CCHHHHHHHHH
Confidence 444444554432 3788888877 78888999999999999988642 2222322221111 12355556666
Q ss_pred cCCCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CC-e---EEEeCCCC
Q 018443 149 VGMHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GP-T---IIYNVPSR 190 (356)
Q Consensus 149 ~Gadavlv~pP~y~--------~-~s~~~l~~y~~~va~~-~P-i---ilYn~P~~ 190 (356)
+|++.+.+-.-.+. + .+.+.+.+-.+.+.+. .+ + ++|..|..
T Consensus 160 ~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 160 EGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred cCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 79988887655432 2 3556666666666665 32 2 67887854
No 464
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=73.92 E-value=88 Score=30.17 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=67.2
Q ss_pred CCCHHHHHHH----HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC---------CCHHH
Q 018443 72 RFDLEAYDDL----VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------NSTRE 138 (356)
Q Consensus 72 ~ID~~~l~~~----v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~---------~st~~ 138 (356)
.++.+.+.+. ++.+++.|||.|++ -|. -+.+|-+.+++.+.+... .+|+++.+.- .+.++
T Consensus 132 ~~~~~~~~~~~~~q~~~l~~~gvD~i~~-ET~-----~~~~E~~~~~~~~~~~~~-~~pv~is~~~~~~g~l~~G~~~~~ 204 (304)
T PRK09485 132 GLSEEELQDFHRPRIEALAEAGADLLAC-ETI-----PNLDEAEALVELLKEEFP-GVPAWLSFTLRDGTHISDGTPLAE 204 (304)
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCEEEE-ecc-----CCHHHHHHHHHHHHHhcC-CCcEEEEEEeCCCCcCCCCCCHHH
Confidence 3677776655 88888999999975 222 256777778877664442 5798886632 35667
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC
Q 018443 139 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV 187 (356)
Q Consensus 139 ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~ 187 (356)
+++.... ..+++++.+=. ..++.+....+.+... .|+++|=|
T Consensus 205 ~~~~l~~--~~~~~~iGiNC-----~~p~~~~~~l~~~~~~~~~pl~~~PN 248 (304)
T PRK09485 205 AAALLAA--SPQVVAVGVNC-----TAPELVTAAIAALRAVTDKPLVVYPN 248 (304)
T ss_pred HHHHHhc--CCCceEEEecC-----CCHHHHHHHHHHHHhccCCcEEEECC
Confidence 7766642 22467776543 2456777888777664 68998855
No 465
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=73.79 E-value=72 Score=29.11 Aligned_cols=106 Identities=19% Similarity=0.102 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC----CCCHHHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG----SNSTREAIHATEQGF 147 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg----~~st~~ai~lar~a~ 147 (356)
..+.+...++++..++.|++-+=+ |... +...++++.. ..++.+||+..- ..+.++..+..++++
T Consensus 72 ~~~~~~~~~ll~~~~~~~~d~vDi-----El~~---~~~~~~~~~~---~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~ 140 (225)
T cd00502 72 EGSEEEYLELLEEALKLGPDYVDI-----ELDS---ALLEELINSR---KKGNTKIIGSYHDFSGTPSDEELVSRLEKMA 140 (225)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEE-----Eecc---hHHHHHHHHH---HhCCCEEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 467777778888888888777765 3322 2222333222 146778888653 224678888888889
Q ss_pred HcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018443 148 AVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVP 188 (356)
Q Consensus 148 ~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn~P 188 (356)
+.|+|-+=+........+--.+......+... .|++.|+.-
T Consensus 141 ~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG 183 (225)
T cd00502 141 ALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINMG 183 (225)
T ss_pred HhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 99998885554333222223344444444332 488888853
No 466
>PRK15447 putative protease; Provisional
Probab=73.77 E-value=29 Score=33.50 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccccc----CCCHHHHHHHHHHHHHHhCCCcEEEEecCCC-CHHHHHHHHHHHHHcCCC
Q 018443 78 YDDLVNMQIVNGAEGMIVGGTTGEGQ----LMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREAIHATEQGFAVGMH 152 (356)
Q Consensus 78 l~~~v~~li~~Gv~Gl~v~GstGE~~----~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~-st~~ai~lar~a~~~Gad 152 (356)
++.+...+.+.|+|.|++.+ +.+ .+|.+|-.+.++.+-+ .| .+|++.+-.. ..++-++..+...+.|.|
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~---~~~~~R~~f~~~~l~e~v~~~~~--~g-kkvyva~p~i~~~~~e~~~l~~~l~~~~~ 90 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGE---TVCSKRRELKVGDWLELAERLAA--AG-KEVVLSTLALVEAPSELKELRRLVENGEF 90 (301)
T ss_pred HHHHHHHHHcCCCCEEEECC---ccCCCccCCCHHHHHHHHHHHHH--cC-CEEEEEecccccCHHHHHHHHHHHhcCCC
Confidence 45666777788999999863 332 3899999999988764 33 4676655443 224444555556667889
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHH
Q 018443 153 AALHINPYYGKTSLEGLISHFDS 175 (356)
Q Consensus 153 avlv~pP~y~~~s~~~l~~y~~~ 175 (356)
+|++.. -+.+.+.++
T Consensus 91 ~v~v~d--------~g~l~~~~e 105 (301)
T PRK15447 91 LVEAND--------LGAVRLLAE 105 (301)
T ss_pred EEEEeC--------HHHHHHHHh
Confidence 888743 345566665
No 467
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=73.55 E-value=37 Score=32.65 Aligned_cols=124 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecCCCCHH-----------
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNSTR----------- 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg~~st~----------- 137 (356)
+|...-...+...++.|.+.+.+=|| .|+.||=.++.+.+++.+.. .+.| +..+++..-.
T Consensus 79 LDHg~~~e~i~~ai~~GFtSVM~DgS-----~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T 153 (282)
T TIGR01858 79 LDHHESLDDIRQKVHAGVRSAMIDGS-----HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYT 153 (282)
T ss_pred CCCCCCHHHHHHHHHcCCCEEeecCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccC
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y---~~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+--+..+.+++.|+|++-+.--.- ++..+.==++-.++|.+. .|++++= |..++.+.+.+..++
T Consensus 154 ~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHG-----gSG~~~e~~~~ai~~ 222 (282)
T TIGR01858 154 DPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHG-----ASDVPDEDVRRTIEL 222 (282)
T ss_pred CHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEec-----CCCCCHHHHHHHHHc
No 468
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.34 E-value=14 Score=36.84 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CcccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHH
Q 018443 70 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGF 147 (356)
Q Consensus 70 dg~ID~~~l~~~v~~li~~Gv~Gl~v~G-stGE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~ 147 (356)
+|...++-=++-++.+.+.+.+|+.++| +.||- .++..++++.+......+.|. +.|||.. +..-.|.
T Consensus 184 QGg~y~dLR~~sa~~l~~l~f~gyaIGGl~vge~----~~~m~~il~~~~~~Lp~~kPryLmGvG~P------~~i~~aV 253 (372)
T COG0343 184 QGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEP----KEDMVRILEATKPLLPEDKPRYLMGVGHP------EDIVEAV 253 (372)
T ss_pred cCCCcHHHHHHHHHHHHhCCCCceeecCccCCCC----HHHHHHHHHHhhccCCCCCCEEeecCCCH------HHHHHHH
Confidence 6888888888999999999999999999 88985 899999999998888777786 6699975 3344567
Q ss_pred HcCCCEEEEcCC
Q 018443 148 AVGMHAALHINP 159 (356)
Q Consensus 148 ~~Gadavlv~pP 159 (356)
+.|+|-.=...|
T Consensus 254 ~~GvDmFDcv~p 265 (372)
T COG0343 254 ALGVDMFDCVMP 265 (372)
T ss_pred HhCCchhhccch
Confidence 789887766655
No 469
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=73.18 E-value=32 Score=32.58 Aligned_cols=103 Identities=9% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC-----C--CcEEEEecCCC--CHHHHHHHHHH
Q 018443 75 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-----A--SVKVIGNTGSN--STREAIHATEQ 145 (356)
Q Consensus 75 ~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~-----g--rvpVi~gvg~~--st~~ai~lar~ 145 (356)
.+.+.+.++++.+.||..+.+-..+-|.+.=+.+|-..|++...+... . ++.++...... ++.++++.++.
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~ 136 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPDGRWRVRHVGSLDLLPAPSANRLKEAEE 136 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHHHHHhCCeEEEEECChhhCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999888877766543 2 33333322211 34445555554
Q ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018443 146 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 179 (356)
Q Consensus 146 a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~ 179 (356)
+-+.+-...+-+.=.|. +.+||.+-.+.+++.
T Consensus 137 ~T~~~~~~~Lnia~~Yg--gr~EI~~A~~~~~~~ 168 (256)
T PRK14828 137 ATVGNDGIKVNVAVGYG--GRQEIVDAVRSLLTE 168 (256)
T ss_pred hhcCCCCcEEEEEecCC--CHHHHHHHHHHHHHH
Confidence 44443333333332332 678899988888764
No 470
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=73.14 E-value=11 Score=31.24 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=54.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCC--CHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH--HHH
Q 018443 69 PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM--SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH--ATE 144 (356)
Q Consensus 69 ~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~L--t~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~--lar 144 (356)
....++.+.+++.++.+.+.++.+|.+.| || +.| ..++-.++++.+.+... .+++..+......+... ..+
T Consensus 32 ~~~~~~~~~~~~ii~~~~~~~~~~i~l~G--GE-Pll~~~~~~l~~i~~~~k~~~~--~~~~~~tng~~~~~~~~~~~~~ 106 (139)
T PF13353_consen 32 RGKELSEEIIEEIIEELKNYGIKGIVLTG--GE-PLLHENYDELLEILKYIKEKFP--KKIIILTNGYTLDELLDELIEE 106 (139)
T ss_dssp -SEEC-HHHHHHHCHHHCCCCCCEEEEEC--ST-GGGHHSHHHHHHHHHHHHHTT---SEEEEEETT--HHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHhcCCceEEEEcC--CC-eeeeccHhHHHHHHHHHHHhCC--CCeEEEECCCchhHHHhHHHHh
Confidence 33456789999999999899999999888 99 777 78888888888777554 35666666666666654 233
Q ss_pred HHHHcCCCEEEEcCCCC
Q 018443 145 QGFAVGMHAALHINPYY 161 (356)
Q Consensus 145 ~a~~~Gadavlv~pP~y 161 (356)
.....+ +.+--|+.
T Consensus 107 ~~~~~~---vsvd~~~~ 120 (139)
T PF13353_consen 107 LLDEID---VSVDGPFD 120 (139)
T ss_dssp HHHTES---EEEE---S
T ss_pred ccCccE---EEEEEech
Confidence 334433 45544443
No 471
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=73.01 E-value=77 Score=29.15 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCcccc-cCCCH--HHHHH---------------------HHHHHHHHhCCCcEE
Q 018443 72 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG-QLMSW--DEHIM---------------------LIGHTVNCFGASVKV 127 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~-~~Lt~--eEr~~---------------------li~~~~~~~~grvpV 127 (356)
.-|+..+++.++.+.+.|++-+-+==.=|.| +.+|. +.-+. .++..+++ +.+ -+
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~-gad-~i 85 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA-GAS-MI 85 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh-CCC-EE
Confidence 4688899999999999997765443333333 22222 21111 22222221 111 23
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEE--eCCCCCCCCCCHHHHHHHhc
Q 018443 128 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIY--NVPSRTGQDIPPRVIHTMAQ 205 (356)
Q Consensus 128 i~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~~PiilY--n~P~~tG~~ls~~~l~~La~ 205 (356)
.+++-+ +.+..+..+..++.|+.+.+++.|.. +-+.+.+ +.+....+++ =.|+..|..+-+..++++.+
T Consensus 86 ~~H~Ea--~~~~~~~l~~ik~~g~k~GlalnP~T----p~~~i~~---~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 86 TFHVEA--SEHVDRTLQLIKEHGCQAGVVLNPAT----PLHHLEY---IMDKVDLILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred EEcccC--cccHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHH---HHHhCCeEEEEEecCCCCCceecHhHHHHHHH
Confidence 334332 23344444555556666666666642 2222222 2333332222 24666666666655555543
Q ss_pred CCCEEEEeecCchhhHhhhhC--CCeEEEecCcchhHhHHHHcCCceeecccc
Q 018443 206 SPNLAGVKECVGNDRVEHYTG--NGIVVWSGNDDQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 206 ~pnivGiK~s~~d~~i~~~~~--~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~ 256 (356)
.-+.+ .+ .+ -.+.+-.|-...-.......|+++++.|++
T Consensus 157 l~~~~-----------~~-~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 157 VRKMI-----------DE-SGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHH-----------Hh-cCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 11110 00 01 123444455433344456899999998865
No 472
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=72.89 E-value=55 Score=34.03 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=92.8
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccC-CCHHH--HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDE--HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 155 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~-Lt~eE--r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavl 155 (356)
...++.+.+.++..+.|....|+.-- +|.+. +....-.+..-..|| +++|+.-....+.++.++...++|+|.+.
T Consensus 181 ~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~Gr--L~Vgaavg~~~~~~~~~~~l~~ag~d~i~ 258 (495)
T PTZ00314 181 EEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQ--LLVGAAISTRPEDIERAAALIEAGVDVLV 258 (495)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCC--EEEEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence 45566777788888877655554211 12111 111111122222344 44544322234569999999999999998
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCEEEEeecC--c------------h
Q 018443 156 HINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV--G------------N 218 (356)
Q Consensus 156 v~pP~y~~~s~~~l~~y~~~va~~---~PiilYn~P~~tG~~ls~~~l~~La~~pnivGiK~s~--~------------d 218 (356)
+-... ..+. ...+..+.|.+. .||+. |...+++....+.+. .+-+||.+. + -
T Consensus 259 id~a~--G~s~-~~~~~i~~ik~~~~~~~v~a-------G~V~t~~~a~~~~~a-Gad~I~vg~g~Gs~~~t~~~~~~g~ 327 (495)
T PTZ00314 259 VDSSQ--GNSI-YQIDMIKKLKSNYPHVDIIA-------GNVVTADQAKNLIDA-GADGLRIGMGSGSICITQEVCAVGR 327 (495)
T ss_pred EecCC--CCch-HHHHHHHHHHhhCCCceEEE-------CCcCCHHHHHHHHHc-CCCEEEECCcCCcccccchhccCCC
Confidence 86542 2222 234455556554 34444 778889998888853 222444321 1 0
Q ss_pred hh------Hhhhh-CCCeEEEe--cCc--chhHhHHHHcCCceeecccccccHHH
Q 018443 219 DR------VEHYT-GNGIVVWS--GND--DQCHDARWNHGATGVISVTSNLVPGM 262 (356)
Q Consensus 219 ~~------i~~~~-~~~~~v~~--G~d--~~~l~~~l~~Ga~G~is~~~n~~P~~ 262 (356)
+. +.+.. ..++.++. |-- ....- ++.+|+++++.|....-++.
T Consensus 328 p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k-Ala~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 328 PQASAVYHVARYARERGVPCIADGGIKNSGDICK-ALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred ChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH-HHHcCCCEEEECchhccccc
Confidence 11 22222 23567776 322 22333 47899999998877555543
No 473
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=72.89 E-value=15 Score=32.07 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=46.5
Q ss_pred cCCCHHHHHHHHHHHHHHh-CCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 103 QLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 103 ~~Lt~eEr~~li~~~~~~~-~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
..++..||+++++.++... .+.+.++-.+...+.++..++.+++.+.|.+|+|+=.|
T Consensus 100 ~~~p~~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ 157 (174)
T cd07896 100 AKGPFEERLERLKNLLEKIPNPHIKIVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRP 157 (174)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecC
Confidence 5679999999999998765 34555555556667889999999999999999999876
No 474
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=72.86 E-value=17 Score=35.49 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 158 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p 158 (356)
....+.+.+.|++.+.|=|-|=...+.....+ +.+..+.+.++. +|||++=+=.+.+++.+..++ -|+|+||+--
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~-~~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~~---tg~DgVMigR 229 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYLGPADW-DYIKELKEAVPS-IPVIANGDIKSLEDAKEMLEY---TGADGVMIGR 229 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCCCccCH-HHHHHHHHhCCC-CeEEeCCCcCCHHHHHHHHHh---hCCCEEEEcH
Confidence 34555666789999999997766666666444 444456666654 899986554577777766544 6899999998
Q ss_pred CCCCCCC
Q 018443 159 PYYGKTS 165 (356)
Q Consensus 159 P~y~~~s 165 (356)
..|..|.
T Consensus 230 ga~~nP~ 236 (323)
T COG0042 230 GALGNPW 236 (323)
T ss_pred HHccCCc
Confidence 8776664
No 475
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.84 E-value=1.1e+02 Score=30.68 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=50.1
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC----CCCC-CC-CHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCH
Q 018443 124 SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN----PYYG-KT-SLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPP 197 (356)
Q Consensus 124 rvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~p----P~y~-~~-s~~~l~~y~~~va~~~PiilYn~P~~tG~~ls~ 197 (356)
.++|.+.+ +..+..++++.+.++|+|.+.+.. ..|. .. +.+.+.+..+++ ..||+. |.-.++
T Consensus 131 ~V~v~vr~---~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-------G~V~t~ 198 (368)
T PRK08649 131 GVIVAVSL---SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-------GGCVTY 198 (368)
T ss_pred eEEEEEec---CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-------eCCCCH
Confidence 35555555 335678999999999999999853 2332 22 455555555542 267765 445778
Q ss_pred HHHHHHhcCCCEEEEeec
Q 018443 198 RVIHTMAQSPNLAGVKEC 215 (356)
Q Consensus 198 ~~l~~La~~pnivGiK~s 215 (356)
+...++.+ -++-+||..
T Consensus 199 e~A~~l~~-aGAD~V~VG 215 (368)
T PRK08649 199 TTALHLMR-TGAAGVLVG 215 (368)
T ss_pred HHHHHHHH-cCCCEEEEC
Confidence 88888876 455555554
No 476
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.60 E-value=54 Score=29.85 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=39.3
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018443 124 SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 188 (356)
Q Consensus 124 rvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P 188 (356)
+..++...+..+.+...+..+.+...++||+++.+. +.+......+.+.+. .|++..|.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~-----~~~~~~~~i~~~~~~~ipvv~~~~~ 91 (271)
T cd06321 31 GVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV-----DSKGIAPAVKRAQAAGIVVVAVDVA 91 (271)
T ss_pred CeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC-----ChhHhHHHHHHHHHCCCeEEEecCC
Confidence 455655555566777778888888899999988652 222223334555554 799999864
No 477
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.56 E-value=35 Score=31.08 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=53.7
Q ss_pred EEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH
Q 018443 92 GMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLIS 171 (356)
Q Consensus 92 Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~ 171 (356)
|+++.....++ ..+-.+=++.+++.. ...+++.....+.+.-.+..+.....++||+++.++... +......
T Consensus 3 gvi~~~~~~~~----~~~~~~gi~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~~~~~~~ 74 (273)
T cd06292 3 GLLVPELSNPI----FPAFAEAIEAALAQY--GYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHA--DTHADHS 74 (273)
T ss_pred EEEeCCCcCch----HHHHHHHHHHHHHHC--CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCC--cccchhH
Confidence 55554433332 233333333444433 244555555567777788889999999999999865321 2234556
Q ss_pred HHHHHHhc-CCeEEEeC
Q 018443 172 HFDSVLSM-GPTIIYNV 187 (356)
Q Consensus 172 y~~~va~~-~PiilYn~ 187 (356)
+++.+.+. .|++.++.
T Consensus 75 ~i~~~~~~~ipvV~i~~ 91 (273)
T cd06292 75 HYERLAERGLPVVLVNG 91 (273)
T ss_pred HHHHHHhCCCCEEEEcC
Confidence 66666665 79999985
No 478
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=72.54 E-value=44 Score=33.53 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=41.6
Q ss_pred HCCCCEEEEccCcccc----------cCCCHHHHHHHHHHHHHHh--CCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEE
Q 018443 87 VNGAEGMIVGGTTGEG----------QLMSWDEHIMLIGHTVNCF--GASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 154 (356)
Q Consensus 87 ~~Gv~Gl~v~GstGE~----------~~Lt~eEr~~li~~~~~~~--~grvpVi~gvg~~st~~ai~lar~a~~~Gadav 154 (356)
..|+|+|.+-|+-|.. +.++..+=...+..++... ..++|||+.=|=.+-.+++ .|..+|||+|
T Consensus 236 ~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~----kalaLGAd~V 311 (392)
T cd02808 236 AAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVA----KALALGADAV 311 (392)
T ss_pred HcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHH----HHHHcCCCee
Confidence 4569999998875432 2344443222222222222 3478888733333344433 3456899999
Q ss_pred EEcCCCCCC
Q 018443 155 LHINPYYGK 163 (356)
Q Consensus 155 lv~pP~y~~ 163 (356)
.+..|+...
T Consensus 312 ~ig~~~l~a 320 (392)
T cd02808 312 GIGTAALIA 320 (392)
T ss_pred eechHHHHh
Confidence 999887643
No 479
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=72.52 E-value=20 Score=35.66 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=51.0
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCCEEEEc--cCcccccCCCHH-HHHHHHHHHHHHhCCCcEEEEecCCCCHH--HHHHHH
Q 018443 70 DGR-FDLEAYDDLVNMQIVNGAEGMIVG--GTTGEGQLMSWD-EHIMLIGHTVNCFGASVKVIGNTGSNSTR--EAIHAT 143 (356)
Q Consensus 70 dg~-ID~~~l~~~v~~li~~Gv~Gl~v~--GstGE~~~Lt~e-Er~~li~~~~~~~~grvpVi~gvg~~st~--~ai~la 143 (356)
.|. -+.+.+..-++++.+.|.+.|+++ |++. +++.+.. --...+....+.. .+||+...++..-+ -...++
T Consensus 232 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~-yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a 308 (360)
T PRK12595 232 RGLSATIEEFIYAAEYIMSQGNGQIILCERGIRT-YEKATRNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTA 308 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCC-CCCCCCCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhHHHHH
Confidence 344 578888888888888888777777 4443 2211100 1333444444433 47888765553322 233478
Q ss_pred HHHHHcCCCEEEEc
Q 018443 144 EQGFAVGMHAALHI 157 (356)
Q Consensus 144 r~a~~~Gadavlv~ 157 (356)
+.|..+||||+++-
T Consensus 309 ~aAva~GAdg~~iE 322 (360)
T PRK12595 309 KAALAIGADGVMAE 322 (360)
T ss_pred HHHHHcCCCeEEEE
Confidence 88888899888764
No 480
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=72.31 E-value=58 Score=33.67 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=74.6
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEE-c
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH-I 157 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv-~ 157 (356)
.+.++.++++|++.+++-.+-|.. +.-.+.++.+.+.. .++||++|-.. + .+-++++.++|||+|-+ .
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~-----~~vl~~i~~i~~~~-p~~~vi~g~v~-t----~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS-----EGVLDRVREIKAKY-PDVQIIAGNVA-T----AEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc-----hhHHHHHHHHHhhC-CCCCEEEeccC-C----HHHHHHHHHcCCCEEEECC
Confidence 567778888999988776655552 22344455555544 36898886554 2 34455666789999976 3
Q ss_pred CCCCC---------CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCEEEEeecCchh---hH
Q 018443 158 NPYYG---------KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---RV 221 (356)
Q Consensus 158 pP~y~---------~~s~~~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~--~pnivGiK~s~~d~---~i 221 (356)
.|.-. ...+-+.+.-..+.+.. .|+|. --|+.-+-+..+.|+- .--++|=-.+..++ ..
T Consensus 299 g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~via-----dGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~ 373 (486)
T PRK05567 299 GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIA-----DGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEV 373 (486)
T ss_pred CCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEE-----cCCCCCHHHHHHHHHhCCCEEEECccccccccCCCce
Confidence 34211 11222222222333322 45443 2355555677777772 23334444443332 11
Q ss_pred hhhhCCCeEEEecCcc
Q 018443 222 EHYTGNGIVVWSGNDD 237 (356)
Q Consensus 222 ~~~~~~~~~v~~G~d~ 237 (356)
....+..+..|-|...
T Consensus 374 ~~~~g~~~k~y~gm~s 389 (486)
T PRK05567 374 ELYQGRSYKSYRGMGS 389 (486)
T ss_pred EEECCEEEEEEeccch
Confidence 1122345566666543
No 481
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=72.18 E-value=25 Score=37.14 Aligned_cols=107 Identities=18% Similarity=0.058 Sum_probs=78.4
Q ss_pred cccCCC--CCCCHHHHHHHHHHHHHCCCC------EEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCCC
Q 018443 65 TPYLPD--GRFDLEAYDDLVNMQIVNGAE------GMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNS 135 (356)
Q Consensus 65 TPf~~d--g~ID~~~l~~~v~~li~~Gv~------Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g~~s 135 (356)
-||... .+.|.+-+.++++..++.|++ -+-++-|+| .+++++-.++++.+.+....+..+.+++ .+|+
T Consensus 171 v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG---~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND 247 (564)
T TIGR00970 171 FEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVE---MTTPNVYADSIEYFSTNIAEREKVCLSLHPHND 247 (564)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccC---ccCHHHHHHHHHHHHHhcCcccCceEEEEECCC
Confidence 456532 347999999999999999875 566777888 6799999999999988776544444444 5778
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018443 136 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 174 (356)
Q Consensus 136 t~~ai~lar~a~~~Gadavlv~pP~y~----~~s~~~l~~y~~ 174 (356)
.--++.-+-.|.++||+.+-..+=-.+ ..+-++++-.+.
T Consensus 248 ~GlAvANslaAv~aGa~~v~gt~~G~GERaGNa~le~lv~~L~ 290 (564)
T TIGR00970 248 RGTAVAAAELGFLAGADRIEGCLFGNGERTGNVDLVTLALNLY 290 (564)
T ss_pred CChHHHHHHHHHHhCCCEEEeecCcCCccccCccHHHHHHHHH
Confidence 888999999999999999986542222 234455555543
No 482
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=72.12 E-value=56 Score=27.13 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=59.3
Q ss_pred HHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEE-EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 018443 82 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGFAVGMHAALHINPY 160 (356)
Q Consensus 82 v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpV-i~gvg~~st~~ai~lar~a~~~Gadavlv~pP~ 160 (356)
+++|++.|..-+...+ ++...-...+|.+-++.+.+..+-...+ +......+......+....++...|++++.
T Consensus 1 ~~~L~~~G~r~i~~i~--~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~--- 75 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIG--GPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICS--- 75 (160)
T ss_dssp HHHHHHTT-SSEEEEE--SSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEES---
T ss_pred ChHHHHCCCCeEEEEe--cCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEc---
Confidence 5899999999888777 6666667888888888888765433222 223333333333333333344477888885
Q ss_pred CCCCCHHHHHHHHHHHHhc---CC----eEEEeC
Q 018443 161 YGKTSLEGLISHFDSVLSM---GP----TIIYNV 187 (356)
Q Consensus 161 y~~~s~~~l~~y~~~va~~---~P----iilYn~ 187 (356)
++.-....++.+.+. .| |+-||.
T Consensus 76 ----~~~~a~~~~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 76 ----NDRLALGVLRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp ----SHHHHHHHHHHHHHTTSCTTTTSEEEEESS
T ss_pred ----CHHHHHHHHHHHHHcCCcccccccEEEecC
Confidence 455555556666554 23 777774
No 483
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=72.06 E-value=5.1 Score=38.18 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=75.4
Q ss_pred CCCC--CCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEe---------cCCCCH
Q 018443 68 LPDG--RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN---------TGSNST 136 (356)
Q Consensus 68 ~~dg--~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~g---------vg~~st 136 (356)
++|| +.|.+.+++.++.+-+. +..+++.-|||-....+.+||.+.++.+ ...-..+=.| +..++.
T Consensus 50 ~~~G~~s~d~~~~~e~~~~IR~~-~pd~iv~~Ttg~~~~~~~~~R~~~v~~~---~pd~asl~~gs~n~~~~~~~~~n~~ 125 (272)
T PF05853_consen 50 DEDGRPSLDPELYAEVVEAIRAA-CPDLIVQPTTGGGGGPDPEERLAHVEAW---KPDMASLNPGSMNFGTRDRVYINTP 125 (272)
T ss_dssp TTTS-EE--HHHHHHHHHHHHHH-STTSEEEEESSTTTTSGHHHHCTHHHHH-----SEEEEE-S-EEESGGCSEE---H
T ss_pred CCCCCcCCCHHHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCHHHHHHHHHhc---CCCeEEecccccccccCCceecCCH
Confidence 3455 59999999999999887 4556678899999999999999999887 1222222222 235678
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc----CCeEEEeC-CCCCCCCCCHHHHHHHh
Q 018443 137 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM----GPTIIYNV-PSRTGQDIPPRVIHTMA 204 (356)
Q Consensus 137 ~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~----~PiilYn~-P~~tG~~ls~~~l~~La 204 (356)
..+.++++.+++.|+. |.+.-.+... +..+..+.+. .|+++--. -...|..-+++.+..+.
T Consensus 126 ~~~~~~~~~~~e~Gi~------pe~ev~d~~~-l~~~~~l~~~G~l~~p~~~~~vlG~~~g~~~~~~~l~~~l 191 (272)
T PF05853_consen 126 ADARELARRMRERGIK------PEIEVFDPGH-LRNARRLIEKGLLPGPLLVNFVLGVPGGMPATPENLLAML 191 (272)
T ss_dssp HHHHHHHHHHHHTT-E------EEEEESSHHH-HHHHHHHHHTTSS-SSEEEEEEES-TTS--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCe------EEEEEEcHHH-HHHHHHHHHCCCCCCCeEEEEcccCCCCCCCCHHHHHHHH
Confidence 8999999999999974 3332335444 4444556654 25432221 11245666677666654
No 484
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=71.96 E-value=93 Score=30.01 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCC-HHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt-~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.|++.++..++---+.+...|+ .-+.|+...+. .+.-..+++.+++...-++||.++.-+.+ ++.++.|-+.|+
T Consensus 26 ~n~e~~~avi~aAe~~~sPvIl-q~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~----~~~i~~ai~~Gf 100 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLI-QTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGH----YEDALECIEVGY 100 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEE-EcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCC----HHHHHHHHHcCC
Confidence 5899999999999998988775 55666666666 67777778878777655789999998763 556778888999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018443 152 HAALHINPYYGKTSLEGLISHFDSVLS 178 (356)
Q Consensus 152 davlv~pP~y~~~s~~~l~~y~~~va~ 178 (356)
+.||+=--. .+.++.++.-+++.+
T Consensus 101 tSVm~d~S~---l~~eEni~~t~~v~~ 124 (293)
T PRK07315 101 TSIMFDGSH---LPVEENLKLAKEVVE 124 (293)
T ss_pred CEEEEcCCC---CCHHHHHHHHHHHHH
Confidence 999986543 366777777777765
No 485
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=71.93 E-value=7.2 Score=37.95 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCE------EEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHH
Q 018443 72 RFDLEAYDDLVNMQIVNGAEG------MIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 145 (356)
Q Consensus 72 ~ID~~~l~~~v~~li~~Gv~G------l~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~ 145 (356)
..+.+.+.+++-.-+..|++| ++=.++++ ..+|..|++-+-.++..+..-.+||..+++. .++...+.++.
T Consensus 99 ~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~--~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~-g~~~~~e~~~i 175 (308)
T PF02126_consen 99 EASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS--NPITPLEEKVLRAAARAHKETGAPISTHTGR-GTRMGLEQLDI 175 (308)
T ss_dssp TSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT--TBCEHHHHHHHHHHHHHHHHHT-EEEEEEST-TGTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCCccchhheeEeecc--CCCCHHHHHHHHHHHHHHHHhCCeEEEcCCC-CCcCHHHHHHH
Confidence 345566666666667788884 65444333 7889999987766666555567999999975 45456666666
Q ss_pred HHHcCCC--EEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCC
Q 018443 146 GFAVGMH--AALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVP 188 (356)
Q Consensus 146 a~~~Gad--avlv~pP~y~~~s~~~l~~y~~~va~~~PiilYn~P 188 (356)
.++.|+| .+++.- .-...+ ..|++++++..=.+=||..
T Consensus 176 l~e~Gv~~~rvvigH--~D~~~D---~~y~~~la~~G~~l~~D~~ 215 (308)
T PF02126_consen 176 LEEEGVDPSRVVIGH--MDRNPD---LDYHRELADRGVYLEFDTI 215 (308)
T ss_dssp HHHTT--GGGEEETS--GGGST----HHHHHHHHHTT-EEEETTT
T ss_pred HHHcCCChhHeEEeC--CCCCCC---HHHHHHHHhcCCEEEecCC
Confidence 7788864 455432 111111 5788999988667778755
No 486
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=71.90 E-value=66 Score=27.84 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEEEEecCCCCHHHHHH
Q 018443 63 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIH 141 (356)
Q Consensus 63 l~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpVi~gvg~~st~~ai~ 141 (356)
++||-+.+ .+.+.+.++.+.+.|++.+.+-- ..++..+..++++.+.+.... ++++++. +
T Consensus 3 ~it~~~~~----~~~~~~~l~~l~~~g~~~i~lr~-----~~~~~~~~~~~~~~i~~~~~~~~~~l~~~----------~ 63 (196)
T cd00564 3 LITDRRLD----GEDLLEVVEAALKGGVTLVQLRE-----KDLSARELLELARALRELCRKYGVPLIIN----------D 63 (196)
T ss_pred EEeCCccc----cchHHHHHHHHHhcCCCEEEEeC-----CCCCHHHHHHHHHHHHHHHHHhCCeEEEe----------C
Q ss_pred HHHHHHHcCCCEEEEcCCCCCC-----------------CCHHHHHHHHHHHHhc---CCeEEEeCCCCCC--CCCCHHH
Q 018443 142 ATEQGFAVGMHAALHINPYYGK-----------------TSLEGLISHFDSVLSM---GPTIIYNVPSRTG--QDIPPRV 199 (356)
Q Consensus 142 lar~a~~~Gadavlv~pP~y~~-----------------~s~~~l~~y~~~va~~---~PiilYn~P~~tG--~~ls~~~ 199 (356)
..+.+.++|+|++.+....... .+.+++.+..+.-++. .|+ |.-....+ .....+.
T Consensus 64 ~~~~a~~~g~~~vh~~~~~~~~~~~~~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~--~~~~~~~~~~~~~~~~~ 141 (196)
T cd00564 64 RVDLALAVGADGVHLGQDDLPVAEARALLGPDLIIGVSTHSLEEALRAEELGADYVGFGPV--FPTPTKPGAGPPLGLEL 141 (196)
T ss_pred hHHHHHHcCCCEEecCcccCCHHHHHHHcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCc--cCCCCCCCCCCCCCHHH
Q ss_pred HHHHhcCCCEEEEeecCchhhHhhhhCCCeEEEecCcchhHhHHHHcCCceeecccc
Q 018443 200 IHTMAQSPNLAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTS 256 (356)
Q Consensus 200 l~~La~~pnivGiK~s~~d~~i~~~~~~~~~v~~G~d~~~l~~~l~~Ga~G~is~~~ 256 (356)
+.++.+.. +-.+.+..|-...-....+..|++|+..+.+
T Consensus 142 ~~~~~~~~------------------~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~ 180 (196)
T cd00564 142 LREIAELV------------------EIPVVAIGGITPENAAEVLAAGADGVAVISA 180 (196)
T ss_pred HHHHHHhC------------------CCCEEEECCCCHHHHHHHHHcCCCEEEEehH
No 487
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=71.81 E-value=91 Score=29.43 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHHc-CCCE
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAV-GMHA 153 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gv-g~~st~~ai~lar~a~~~-Gada 153 (356)
.++.-+.+-+.++|++-+.|.=--=... ......+++.+ + ..++.++-++ |+.+.+|++..|+.|.++ |-|.
T Consensus 20 ~s~~~~~~ai~aSg~~ivTva~rR~~~~---~~~~~~~~~~i-~--~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~ 93 (248)
T cd04728 20 PSPAIMKEAIEASGAEIVTVALRRVNIG---DPGGESFLDLL-D--KSGYTLLPNTAGCRTAEEAVRTARLAREALGTDW 93 (248)
T ss_pred CCHHHHHHHHHHhCCCEEEEEEEecccC---CCCcchHHhhc-c--ccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCe
Confidence 3444455556678888776632111000 01112223222 1 1366777776 667899999999999887 4565
Q ss_pred E---EEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCEE-------EEeecCchh-h
Q 018443 154 A---LHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLA-------GVKECVGND-R 220 (356)
Q Consensus 154 v---lv~pP~y~~~s~~~l~~y~~~va~~~-PiilYn~P~~tG~~ls~~~l~~La~~-pniv-------GiK~s~~d~-~ 220 (356)
| ++..|.|..++..+.++--+.+.+.. -++-|-.+ ++.+.++|++. +.++ |=.....++ .
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d-------d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~ 166 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD-------DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYN 166 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC-------CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHH
Confidence 5 34447887888899999989888773 44436543 35666777653 3333 211000011 1
Q ss_pred HhhhhC-CCeEEEecC----cchhHhHHHHcCCceeeccccccc---HHHHHHHH
Q 018443 221 VEHYTG-NGIVVWSGN----DDQCHDARWNHGATGVISVTSNLV---PGMMRELM 267 (356)
Q Consensus 221 i~~~~~-~~~~v~~G~----d~~~l~~~l~~Ga~G~is~~~n~~---P~~~~~l~ 267 (356)
+..... .++.|+.+. .+.... ++.+|++|++.+++-.- |..+.+-|
T Consensus 167 I~~I~e~~~vpVI~egGI~tpeda~~-AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 167 LRIIIERADVPVIVDAGIGTPSDAAQ-AMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHH-HHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 222211 345555432 233433 48999999998887665 66654433
No 488
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.79 E-value=34 Score=31.33 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred CcEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018443 124 SVKVIGNTGSN-STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 188 (356)
Q Consensus 124 rvpVi~gvg~~-st~~ai~lar~a~~~Gadavlv~pP~y~~~s~~~l~~y~~~va~~-~PiilYn~P 188 (356)
...++...... +.+...+..+.+...++|++++.+. +.+.+...++.+.+. .|+++.|.+
T Consensus 30 g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-----~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 30 GVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP-----DPDALDPAIKRAVAAGIPVISFNAG 91 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC-----ChHHhHHHHHHHHHCCCeEEEeCCC
Confidence 45666655555 7888889999998899999998764 234445556666665 799999864
No 489
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=71.76 E-value=1.1e+02 Score=32.57 Aligned_cols=101 Identities=8% Similarity=0.036 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC--C-CcEEEEe---cCCCCHHHHHHHHHHHHHc
Q 018443 76 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--A-SVKVIGN---TGSNSTREAIHATEQGFAV 149 (356)
Q Consensus 76 ~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~--g-rvpVi~g---vg~~st~~ai~lar~a~~~ 149 (356)
+..+..++...++|++.+-+.-...+ -+ -++.+++.++ | .+-..++ ....+.+.-+++++.+.++
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~lnd------~~---~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAMND------PR---NLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeCCc------HH---HHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc
Confidence 45677888899999999988754444 22 2333333332 2 2212122 1223467788999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEe
Q 018443 150 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYN 186 (356)
Q Consensus 150 Gadavlv~pP~y~~~s~~~l~~y~~~va~~--~PiilYn 186 (356)
|||.+.+.- ..+..+++++.+.++++.+. .||-++-
T Consensus 168 Gad~i~i~D-t~G~l~P~~~~~lv~~lk~~~~~pi~~H~ 205 (593)
T PRK14040 168 GVDSLCIKD-MAGLLKPYAAYELVSRIKKRVDVPLHLHC 205 (593)
T ss_pred CCCEEEECC-CCCCcCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 999877654 56667889999999999876 5766553
No 490
>TIGR03586 PseI pseudaminic acid synthase.
Probab=71.75 E-value=70 Score=31.42 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=53.3
Q ss_pred eEeeecccCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q 018443 60 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREA 139 (356)
Q Consensus 60 i~al~TPf~~dg~ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~a 139 (356)
+..+.|||+.+ .++++.+.|++.+=|. +||... ..+++.+.+ .+.|||..+|..+.+|.
T Consensus 91 i~~~stpfd~~----------svd~l~~~~v~~~KI~--S~~~~n------~~LL~~va~---~gkPvilstG~~t~~Ei 149 (327)
T TIGR03586 91 LTIFSSPFDET----------AVDFLESLDVPAYKIA--SFEITD------LPLIRYVAK---TGKPIIMSTGIATLEEI 149 (327)
T ss_pred CcEEEccCCHH----------HHHHHHHcCCCEEEEC--CccccC------HHHHHHHHh---cCCcEEEECCCCCHHHH
Confidence 45678999743 3467777899977653 345443 346665554 35699999999888888
Q ss_pred HHHHHHHHHcCCCEEEE
Q 018443 140 IHATEQGFAVGMHAALH 156 (356)
Q Consensus 140 i~lar~a~~~Gadavlv 156 (356)
...++...+.|.+-+.+
T Consensus 150 ~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 150 QEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHCCCCcEEE
Confidence 88888888888854433
No 491
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.65 E-value=56 Score=29.63 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCCCcEEEE---------ecCCCCHHHHHHHHH
Q 018443 74 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG---------NTGSNSTREAIHATE 144 (356)
Q Consensus 74 D~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~grvpVi~---------gvg~~st~~ai~lar 144 (356)
|.+.....++.++..+++|+++.++... ++ .++.+. ..++||+. .|+..+.+-....++
T Consensus 40 ~~~~~~~~i~~l~~~~~dgiii~~~~~~------~~---~~~~~~---~~~iPvv~~~~~~~~~~~V~~d~~~ag~~a~~ 107 (265)
T cd06285 40 NPDAQRRAIEMLLDRRVDGLILGDARSD------DH---FLDELT---RRGVPFVLVLRHAGTSPAVTGDDVLGGRLATR 107 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC------hH---HHHHHH---HcCCCEEEEccCCCCCCEEEeCcHHHHHHHHH
Confidence 6678889999999999999998764322 12 133322 23466543 355566777788889
Q ss_pred HHHHcCCCEEEEcC
Q 018443 145 QGFAVGMHAALHIN 158 (356)
Q Consensus 145 ~a~~~Gadavlv~p 158 (356)
+..+.|..-+.++.
T Consensus 108 ~L~~~g~~~i~~i~ 121 (265)
T cd06285 108 HLLDLGHRRIAVLA 121 (265)
T ss_pred HHHHCCCccEEEEe
Confidence 99999988776664
No 492
>PRK05985 cytosine deaminase; Provisional
Probab=71.59 E-value=83 Score=31.09 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=11.6
Q ss_pred hHhhhhCCCeEEEecCcc
Q 018443 220 RVEHYTGNGIVVWSGNDD 237 (356)
Q Consensus 220 ~i~~~~~~~~~v~~G~d~ 237 (356)
.+..+.+.++.|--|.|.
T Consensus 280 ~~~~l~~~Gv~v~lGtD~ 297 (391)
T PRK05985 280 PVAALRAAGVTVFGGNDG 297 (391)
T ss_pred CHHHHHHCCCeEEEecCC
Confidence 455555667777777764
No 493
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=71.47 E-value=17 Score=31.39 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEccCccccc---C-----------------CCHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018443 74 DLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQ---L-----------------MSWDEHIMLIGHTVNCFG-ASVKVIGNT 131 (356)
Q Consensus 74 D~~~l~~~v~~li~-~Gv~Gl~v~GstGE~~---~-----------------Lt~eEr~~li~~~~~~~~-grvpVi~gv 131 (356)
+++.++++++.+.+ .+++-|++.|.-|-.. . ++.-. -..+..+..... .+.-||+--
T Consensus 3 ~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D-~~~~~~~~~~~~~~~tlvi~iS 81 (158)
T cd05015 3 ELERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVD-PDDLAELLKKLDPETTLFIVIS 81 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCC-HHHHHHHHHhCCcccEEEEEEE
Confidence 46778888888877 4899999988766333 0 00000 111112222222 232233333
Q ss_pred CCCCHHHHHHHHHHHHH---------cCCCEEEEcCC
Q 018443 132 GSNSTREAIHATEQGFA---------VGMHAALHINP 159 (356)
Q Consensus 132 g~~st~~ai~lar~a~~---------~Gadavlv~pP 159 (356)
-+-+|.|+++.++.+.+ .|++-+.++.|
T Consensus 82 kSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~ 118 (158)
T cd05015 82 KSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDN 118 (158)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 34468888888888887 77777776654
No 494
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=71.38 E-value=19 Score=35.93 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=24.6
Q ss_pred HhCC-CcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 018443 120 CFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 161 (356)
Q Consensus 120 ~~~g-rvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP~y 161 (356)
..++ .+|||+.=|=.+-.+ +..|..+|||+|++-.|+.
T Consensus 250 e~g~r~vpVIAdGGI~tg~d----i~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 250 ETGGRYVHVIADGGIETSGD----LVKAIACGADAVVLGSPLA 288 (369)
T ss_pred hcCCCCceEEEeCCCCCHHH----HHHHHHcCCCEeeeHHHHH
Confidence 3444 499998444333333 3345668999999998765
No 495
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.36 E-value=18 Score=35.34 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=78.4
Q ss_pred hhhccccCCCCCCCCCcccccCCCCCCCCcc-hhcccCCccccccCceeEeeecc--cCCCCCCCHHHHHHHHHHHHHCC
Q 018443 13 FFLLLRCRKNRKWRPPQAAIIPNYHLPMRSF-EVKNRTSAEDIKALRLITAIKTP--YLPDGRFDLEAYDDLVNMQIVNG 89 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Gvi~al~TP--f~~dg~ID~~~l~~~v~~li~~G 89 (356)
|+-+..|+|+-.|- .....+..|+..-+ ++|..+.. |+. |..= +.+ +. ++..|.+...++++.+.+.|
T Consensus 179 Flsp~~N~R~D~yG---GslenR~rf~~EiI~aIR~avG~-d~~---v~vr-is~~~~~-~~g~~~eea~~ia~~Le~~G 249 (338)
T cd04733 179 FLSPLTNKRTDEYG---GSLENRARLLLEIYDAIRAAVGP-GFP---VGIK-LNSADFQ-RGGFTEEDALEVVEALEEAG 249 (338)
T ss_pred hcCCcCCCCCccCC---CCHHHHHHHHHHHHHHHHHHcCC-CCe---EEEE-EcHHHcC-CCCCCHHHHHHHHHHHHHcC
Confidence 33444478887774 23556666666665 56666542 221 1111 112 22 34578888999999999999
Q ss_pred CCEEEEccCcccccCCC--------HHH--HHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEcC
Q 018443 90 AEGMIVGGTTGEGQLMS--------WDE--HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV-GMHAALHIN 158 (356)
Q Consensus 90 v~Gl~v~GstGE~~~Lt--------~eE--r~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~-Gadavlv~p 158 (356)
++-|-|-+.+-|..... ..+ .....+.+.+.+ ++||+++=+-.+.++ ++.+.+. ++|.|++.-
T Consensus 250 vd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~----a~~~l~~g~aD~V~lgR 323 (338)
T cd04733 250 VDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAA----MEQALASGAVDGIGLAR 323 (338)
T ss_pred CCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHH----HHHHHHcCCCCeeeeCh
Confidence 99998766553322211 001 134444455555 589887654434433 4444444 489999887
Q ss_pred CCCCCC
Q 018443 159 PYYGKT 164 (356)
Q Consensus 159 P~y~~~ 164 (356)
|....|
T Consensus 324 ~~iadP 329 (338)
T cd04733 324 PLALEP 329 (338)
T ss_pred HhhhCc
Confidence 766443
No 496
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=71.31 E-value=48 Score=32.78 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHC---CCCEEEEccCcccccCCCHHHHHHHHHHHHHHhC--CCcEEEEecCCCCHHHHHHHHHHHHHcC
Q 018443 76 EAYDDLVNMQIVN---GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVG 150 (356)
Q Consensus 76 ~~l~~~v~~li~~---Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~--grvpVi~gvg~~st~~ai~lar~a~~~G 150 (356)
+++.+.++..... +++.+++.| |+...|+.++-.++++.+.+..+ +.+.+-+.+...+. .-+..+..+++|
T Consensus 35 ~~l~~Ei~~~~~~~~~~i~~i~~gG--Gtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~G 110 (377)
T PRK08599 35 DALIKEMNTYAIRPFDKLKTIYIGG--GTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDL--TKEKLQVLKDSG 110 (377)
T ss_pred HHHHHHHHHhhhcCCCceeEEEeCC--CCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcC
Confidence 4455555543333 466677655 77777888888899988877643 22233333322222 336666677778
Q ss_pred CCEEEEcCCCCC---------CCCHHHHHHHHHHHHhc-CC-e---EEEeCCCCC
Q 018443 151 MHAALHINPYYG---------KTSLEGLISHFDSVLSM-GP-T---IIYNVPSRT 191 (356)
Q Consensus 151 adavlv~pP~y~---------~~s~~~l~~y~~~va~~-~P-i---ilYn~P~~t 191 (356)
++.+.+-.-.+. ..+.+++.+-.+.+.+. .+ + ++|..|.-|
T Consensus 111 ~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 111 VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 888877665442 24556666666666665 34 3 566767543
No 497
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=71.21 E-value=24 Score=34.40 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHH----HHHHHHhC---CCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q 018443 79 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFG---ASVKVIGNTGSNSTREAIHATEQGFAVGM 151 (356)
Q Consensus 79 ~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li----~~~~~~~~---grvpVi~gvg~~st~~ai~lar~a~~~Ga 151 (356)
.++++.+++.|++++.+.-++++ .||.++..+.+ +.+++.++ +..|++-.++. +. .+.....+.|+
T Consensus 183 ~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~--~~---~~~~~~~~~~~ 255 (338)
T TIGR01464 183 IEYLVEQVKAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKG--AG---HLLEELAETGA 255 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCC--cH---HHHHHHHhcCC
Confidence 44555577899999988766654 59999998766 34444443 24566544443 22 33445566788
Q ss_pred CEEEEc
Q 018443 152 HAALHI 157 (356)
Q Consensus 152 davlv~ 157 (356)
|++.+-
T Consensus 256 ~~~s~d 261 (338)
T TIGR01464 256 DVVGLD 261 (338)
T ss_pred CEEEeC
Confidence 887654
No 498
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=71.21 E-value=13 Score=33.46 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=49.2
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Q 018443 101 EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 159 (356)
Q Consensus 101 E~~~Lt~eEr~~li~~~~~~~~grvpVi~gvg~~st~~ai~lar~a~~~Gadavlv~pP 159 (356)
+...++..||+++++.++....+++.+.-.....+.++..++-+.+.+.|-+|+|+=.|
T Consensus 124 ~l~~~p~~eR~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~ 182 (201)
T cd07898 124 SLLDRPLRERRQLLEELFVEIPGRIRIAPALPVESAEELEAAFARARARGNEGLMLKDP 182 (201)
T ss_pred chhhCCHHHHHHHHHHhhcCCCCcEEEeeeEEcCCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 44568999999999999876666777665666677888999999999999999999886
No 499
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=71.20 E-value=35 Score=31.52 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.9
Q ss_pred HHHHHHHHCCCCEEEEccCcc
Q 018443 80 DLVNMQIVNGAEGMIVGGTTG 100 (356)
Q Consensus 80 ~~v~~li~~Gv~Gl~v~GstG 100 (356)
+.++.+.+.|++.+.+-+.+|
T Consensus 71 ~~i~~~~~~gad~itvH~~ag 91 (230)
T PRK00230 71 KAVRALAKLGVDMVNVHASGG 91 (230)
T ss_pred HHHHHHHHcCCCEEEEcccCC
Confidence 356667788999999988877
No 500
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=71.11 E-value=51 Score=31.78 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcccccCCCHHHHHHHHHHHHHHhCC-CcEE---EEecCCCCHH-----------
Q 018443 73 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNSTR----------- 137 (356)
Q Consensus 73 ID~~~l~~~v~~li~~Gv~Gl~v~GstGE~~~Lt~eEr~~li~~~~~~~~g-rvpV---i~gvg~~st~----------- 137 (356)
+|...-...+...++.|...+.+=||. |+.+|=.+..+.+++.+.. .+.| +..+++....
T Consensus 84 LDHg~~~e~i~~ai~~GftSVMiDgS~-----lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T 158 (288)
T TIGR00167 84 LDHGASEEDCAQAVKAGFSSVMIDGSH-----EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYT 158 (288)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEecCCC-----CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCC
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCC---CCCCHH-HHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018443 138 EAIHATEQGFAVGMHAALHINPYY---GKTSLE-GLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 206 (356)
Q Consensus 138 ~ai~lar~a~~~Gadavlv~pP~y---~~~s~~-~l~~y~~~va~~--~PiilYn~P~~tG~~ls~~~l~~La~~ 206 (356)
+--+..+.+++.|+|++.+.--.- ++..+. ==++-.++|.+. .|++++ -|..++.+.+++..++
T Consensus 159 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlH-----GgSG~~~e~~~~ai~~ 228 (288)
T TIGR00167 159 DPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLH-----GGSGIPDEEIKKAISL 228 (288)
T ss_pred CHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEe-----CCCCCCHHHHHHHHHc
Done!