Your job contains 1 sequence.
>018444
MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK
TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL
RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP
CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQGTIRSSP
KMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSS
MAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018444
(356 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 1178 1.1e-119 1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 797 1.2e-90 4
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 582 1.6e-56 1
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 552 2.4e-53 1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 147 2.4e-11 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 123 2.5e-09 2
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 113 9.0e-08 2
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
Identities = 230/359 (64%), Positives = 274/359 (76%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML+KP + DNRQVNLGRDG THNMLELIHSHWKRRRV K++CKGVPTVDM+NVCR LEEK
Sbjct: 210 MLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEK 269
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGG+II RVGG+VYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQE PEGLTK EA E
Sbjct: 270 TGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEF 329
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGKSL PICKL+KNGVY++LV+DVR+AFE SSLVKV+C G+ SDYKK+GAKLKELVP
Sbjct: 330 RVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVP 389
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPS---QGTIR 237
CVLLSFDDEQILMWRG++WKS + + P + + + + D S PS++ + T
Sbjct: 390 CVLLSFDDEQILMWRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTI 449
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGA 297
SSPKMISLW+RA+ES+KA++L+E++LGPDDLLKKVEE EG S AAEH+Y A+VLS DGA
Sbjct: 450 SSPKMISLWQRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGA 509
Query: 298 SSSMAEYEDGSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPLGSLPVDHIAERLQRK 356
+ + +D S+ V P+GSLPVD I +L+ +
Sbjct: 510 AEDYVDEKDRSEEYYSDIDDDFDDECSDDESLDP------VGPVGSLPVDKIVRKLRER 562
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 797 (285.6 bits), Expect = 1.2e-90, Sum P(4) = 1.2e-90
Identities = 146/246 (59%), Positives = 190/246 (77%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV LK RQ+N+GRDGLTHNML IH WKRRRV KIKCKGV TVDMDNVC +LEEK
Sbjct: 251 LVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKI 310
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+R GG+++LFRGRNYN+RTRP++PLMLWKP APVYP+LIQ+ PEGLT+ EA +R
Sbjct: 311 GGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMR 370
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ L+PICKL KNGVY LV++V+ AFE LV+++C+GM SD++K+GAKLK+LVPC
Sbjct: 371 RKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPC 430
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV-DLDIAGDADGSGTPSDDPSQG-TIRSS 239
VL+SF++EQIL+WRG++WKS P + + D+++ PS P+Q T+ +
Sbjct: 431 VLVSFENEQILIWRGREWKSSLTTPDKKGDILEDIEVDTALPEDDEPSVSPNQSQTMTQN 490
Query: 240 PKMISL 245
P + S+
Sbjct: 491 PPLDSM 496
Score = 74 (31.1 bits), Expect = 1.2e-90, Sum P(4) = 1.2e-90
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 227 PSDDPSQG---TIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGIS 279
P D+P + +S +++ L K+A+ES ALVLD +L D + K F ++
Sbjct: 547 PEDEPETSEEISKQSIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVA 602
Score = 38 (18.4 bits), Expect = 1.2e-90, Sum P(4) = 1.2e-90
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 338 VVPLGSLPVDHIAERL 353
V+P G+L VD +A+ L
Sbjct: 685 VMPHGTLKVDELAKLL 700
Score = 37 (18.1 bits), Expect = 1.2e-90, Sum P(4) = 1.2e-90
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 5 PLLKDNRQVNLGRDGLTH 22
P L +V L DGLT+
Sbjct: 127 PQLDAKPEVKLSEDGLTY 144
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 113/233 (48%), Positives = 159/233 (68%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML +++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E +R+KG ++
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF S LV+++C G+ DYKK+GAKL++LVPC+L++FD
Sbjct: 295 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFD 354
Query: 188 DEQILMWRGKDWKSMYP--EPPSF---SNPVDLDIAGDADGSGTPSDDPSQGT 235
EQ+++WRGKD+K E SF + +D D+ D S D P + T
Sbjct: 355 KEQVVIWRGKDYKPPKEDDEYSSFIHRESSIDSDV--DLSCSRGAQDSPDETT 405
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 95/187 (50%), Positives = 137/187 (73%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
RQ+NLG+ G+THNM++ IH+HWK+ ++IKC GVPT+DMDN+C LEEK+GGKI++R
Sbjct: 162 RQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNI 221
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPI 130
++ L+RGRNY+ ++RP PLMLWKP P+YP+L++ +GL E E+R +G +
Sbjct: 222 NILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPAL 281
Query: 131 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190
KL +NGVY+ +V VR FE +V+++C + SD K++G KLKE+VPCV + F DEQ
Sbjct: 282 MKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQ 341
Query: 191 ILMWRGK 197
I++WRGK
Sbjct: 342 IILWRGK 348
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 147 (56.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+ V+KI C+ + ++M LE KTGG +I+R G
Sbjct: 183 KKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSG 242
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 243 SKILLYRGVNYQY 255
Score = 87 (35.7 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 27/100 (27%), Positives = 53/100 (53%)
Query: 112 LTKHEADELRRKGKSLL--PICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGM-HASDY 168
L+ E LR++ + P + ++ V L R ++ F+ + L VN KG + +
Sbjct: 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934
Query: 169 KKLGAKLKELVPCVLLSFDDEQILMWRG----KDWKSMYP 204
+++ AKLKE +L+S + +++++RG ++ KS YP
Sbjct: 935 QEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYP 974
Score = 83 (34.3 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 96 PAA-PVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAF 150
PA P Y + + P G LT E +RR G+ L L +N L + +
Sbjct: 357 PAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLW 416
Query: 151 EGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
E L K+ K G+ ++ + + +LK L L+S D + I+++RGKD+
Sbjct: 417 EKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDF 466
Score = 74 (31.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 24/103 (23%), Positives = 48/103 (46%)
Query: 102 PKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK 161
P+L EG+T E LR+ G + P L + GV+ + ++ ++ LVK+ C
Sbjct: 569 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICN 628
Query: 162 GMHASDYKKLGAKLKELVPCVLLSFD----DEQILMWRGKDWK 200
K+ L+ +L++ + I+++RGK+++
Sbjct: 629 EYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYE 671
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 123 (48.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++N+ + GLT ++E I+ W++ ++++K V DM +E +TGG +I+R G
Sbjct: 261 RINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGS 320
Query: 72 LVYLFRGRNY 81
++ ++RG +Y
Sbjct: 321 VMVVYRGLDY 330
Score = 92 (37.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 33/112 (29%), Positives = 53/112 (47%)
Query: 93 LWKPAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 148
L P P Y + P G LT E LR+ GK+L L +N + L +
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478
Query: 149 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+E S + K+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 479 IWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDF 530
Score = 38 (18.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 20/113 (17%), Positives = 50/113 (44%)
Query: 92 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 151
+L K A + P E +++ E R+ G + + GV+ ++ ++ ++
Sbjct: 633 LLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWK 692
Query: 152 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ----ILMWRGKDWK 200
LVK+ K + + ++ L+ VL++ + ++ +RGK+++
Sbjct: 693 HRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYR 745
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 113 (44.8 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T ++ I WK ++++K +G ++M + LE+KTGG +I+R G + L+RG
Sbjct: 246 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 305
Query: 79 RNY 81
+Y
Sbjct: 306 VSY 308
Score = 88 (36.0 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 30/110 (27%), Positives = 54/110 (49%)
Query: 97 AAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 152
A P Y + P G L EA LRR +S+ P L ++ L + +E
Sbjct: 404 AIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEK 463
Query: 153 SSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S L K+ K G+ ++ +++ LK+L ++LS + + ++ +RGK++ S
Sbjct: 464 SMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLS 513
Score = 83 (34.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 106 QEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHA 165
+E PE +T E R+ G + L + GV+ V ++ ++ LVK+ K
Sbjct: 632 REDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTF 691
Query: 166 SDYKKLGAKLKELVPCVLLSFDDEQ----ILMWRGKDWK 200
KK+ L+ +L+S D I+++RG+D+K
Sbjct: 692 DGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYK 730
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 356 329 0.00089 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 616 (65 KB)
Total size of DFA: 231 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.49u 0.11s 27.60t Elapsed: 00:00:01
Total cpu time: 27.49u 0.11s 27.60t Elapsed: 00:00:01
Start: Sat May 11 14:22:11 2013 End: Sat May 11 14:22:12 2013