BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018444
(356 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/360 (72%), Positives = 301/360 (83%), Gaps = 6/360 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+L+KP L DNRQVNLG DGLTHNMLEL+HSHWKRRRV K++CKGVPTVDMDNVCR LEEK
Sbjct: 149 LLIKPHLSDNRQVNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEK 208
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG+VYLFRGRNYNYRTRPQYP+MLWKPA PVYPKLIQEAPEGLTK +ADE
Sbjct: 209 TGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEF 268
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R+KGK+LLPICKLAKNGVY+TLVRDVR AFEGS LVKV+CKGM SDYKKLGAKLK+LVP
Sbjct: 269 RKKGKNLLPICKLAKNGVYITLVRDVRAAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVP 328
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEP-PSFSNPVDLDIA---GDADGSGTPSDDPSQGTI 236
CVLLSFDDEQILMWRG+DWKSMYPE PS S P +LDIA D+ S D+ +
Sbjct: 329 CVLLSFDDEQILMWRGQDWKSMYPEARPSISFPAELDIASGSDDSGKSDDDCDNSDAKIL 388
Query: 237 RSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDG 296
SSPKM+ LWK A+ES KA++LDEI+LGPD LL KVEEFEGISQA EHSYPALV+S EDG
Sbjct: 389 SSSPKMMLLWKHALESNKAILLDEIDLGPDALLTKVEEFEGISQATEHSYPALVMSSEDG 448
Query: 297 ASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQRK 356
+S+S++ +ED S SEN+ ED+ Y +D++ D + F + ++S P GSL +D IAE+L +K
Sbjct: 449 SSNSISTFEDDSHSENFSEDDMYSDDEYYDSESFEELETS--APPGSLSIDLIAEKLDKK 506
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/360 (71%), Positives = 295/360 (81%), Gaps = 11/360 (3%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K++CKGVPT+DMDNVC LEEK
Sbjct: 203 MLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEK 262
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG+VYLFRGRNYNYRTRPQYP+MLWKPAAPVYPKLIQEAPEGLTK EADEL
Sbjct: 263 TGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADEL 322
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGK+L+PIC+L KNGVY++LV+DVR+AFEGS LVK++CKGMHASDYKK+GAKLKELVP
Sbjct: 323 RMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVP 382
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GTIR 237
CVLLSFDDEQIL WRG WKSMY PSF PV D+A +GSG P + + +
Sbjct: 383 CVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGIPKSNHHRLDTKAVS 442
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGA 297
+SPKM+SLWK AIES+KAL+LDE LGPD LLK VEEFEGISQA EHSYPALV+S EDG
Sbjct: 443 ASPKMMSLWKSAIESSKALLLDETGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGT 502
Query: 298 SSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLPVDHIAERL 353
+ AEYE G SE+Y EDE Y + +DDDE+ ++S VPLGSLPVD +A++L
Sbjct: 503 GGTKAEYE-GYNSEDYSEDEMY---NDDDDDEYLVNESLEEMESPVPLGSLPVDLLAKQL 558
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/361 (71%), Positives = 291/361 (80%), Gaps = 14/361 (3%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K+ CKGVPT+DMDNVC LEEK
Sbjct: 203 MLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEK 262
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG+VYLFRGRNYNYRTRPQYP+MLWKPAAPVYPKLIQEAPEGLTK EADEL
Sbjct: 263 TGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADEL 322
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KG +L+PIC+L KNGVY++LV+DVR+AFEGS LVK++CKGMHASDYKK+GAKLKE VP
Sbjct: 323 RMKGXNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKESVP 382
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GTIR 237
CVLLSFDDEQIL WRG WKSMY PSF PV D+A +GSG P + + +
Sbjct: 383 CVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGVPKSNHHRLDTKAVS 442
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGA 297
+SPKM+SLWK AIES+KAL+LDEI LGPD LLK VEEFEGISQA EHSYPALV+S EDG
Sbjct: 443 ASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGT 502
Query: 298 SSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSS-----DVVPLGSLPVDHIAER 352
+ AE+E G SE+Y EDE Y NDDD+ Y + S VPLGSLPVD +A++
Sbjct: 503 GGTKAEHE-GYNSEDYSEDEMY-----NDDDDEYLVNESLEEMESPVPLGSLPVDLLAKQ 556
Query: 353 L 353
L
Sbjct: 557 L 557
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/362 (70%), Positives = 304/362 (83%), Gaps = 7/362 (1%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKPLL DNRQVNLGRDGLTHNMLELIHSHW+R V K++CKG+PTVDM+N+CR LEE+T
Sbjct: 200 LVKPLLSDNRQVNLGRDGLTHNMLELIHSHWRRSPVCKVRCKGIPTVDMNNICRHLEERT 259
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII+R+GG+VYLF GRNY+YR+R +YP+MLWKPAAPVYPKLIQ+APEGLTK EADE R
Sbjct: 260 GGKIIYRIGGVVYLFCGRNYDYRSRVRYPVMLWKPAAPVYPKLIQDAPEGLTKAEADEFR 319
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
KGK+LLPICKLAKNGVY+TLVRDVRNAFEGS LVK++CKGM+ SDYKKLGAKLKELVPC
Sbjct: 320 EKGKNLLPICKLAKNGVYITLVRDVRNAFEGSPLVKIDCKGMNPSDYKKLGAKLKELVPC 379
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GTIRS 238
VLLSFDDE ILMWRG++WK MYPE PS S P D +D SG DDPS +RS
Sbjct: 380 VLLSFDDEHILMWRGQNWKPMYPEVPSVSTPDAADFTSGSDDSGKFEDDPSNRDANVVRS 439
Query: 239 SPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGAS 298
SPKM+SLW+ AIES+KA++LD+I+LGPDDLL+KVEEFE ISQA EHSYPA++LS EDGA+
Sbjct: 440 SPKMMSLWECAIESSKAILLDQIDLGPDDLLRKVEEFECISQATEHSYPAVILSSEDGAN 499
Query: 299 SSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSD----VVPLGSLPVDHIAERLQ 354
+++A + D S S ++ E++ DD +DDE+YDSDS + VPLGSLPVD +AERL
Sbjct: 500 NTVAAFGDDSLSGSFTEEDDTYTDDEYEDDEYYDSDSFEEVDTAVPLGSLPVDRLAERLH 559
Query: 355 RK 356
++
Sbjct: 560 QE 561
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/339 (68%), Positives = 274/339 (80%), Gaps = 9/339 (2%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP++ NRQVNLGRDGLTHNMLELIHSHWKRRRV KI+C GVPTVDMDNVC +EEK
Sbjct: 204 MLVKPMMSYNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEK 263
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG+VYLFRGRNYNY TRPQYP+MLWKPAAPVYPKLIQ+AP GLTK EADEL
Sbjct: 264 TGGKIIHRVGGVVYLFRGRNYNYSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKDEADEL 323
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGKSLLPICKLAKNGVY +LV+DVR+AFEGS LVK+NCKG+ SDYKK+GAKLK+LVP
Sbjct: 324 RMKGKSLLPICKLAKNGVYTSLVKDVRDAFEGSILVKINCKGLDPSDYKKIGAKLKDLVP 383
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GTIR 237
CVLLSFDDEQILMWRGKDWKS YP+P P +I G+ + SG D+ + +
Sbjct: 384 CVLLSFDDEQILMWRGKDWKSRYPQPLPVFTPSKANIVGNLENSGETDDNQYKHDGNMVN 443
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVL-SREDG 296
+SPKM+SLWKRAI+S+KAL+LDE NLGPD LL+KVEEF+ +SQA EHS+PA L S+E+
Sbjct: 444 TSPKMLSLWKRAIQSSKALLLDEFNLGPDALLEKVEEFDTVSQALEHSHPAFSLSSKEND 503
Query: 297 ASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDS 335
A S A +E+ +Y D + E+D+ ++ Y SD+
Sbjct: 504 AEGSSANFEN-----SYSSDGLHTEEDYAKFEDSYSSDA 537
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/358 (66%), Positives = 286/358 (79%), Gaps = 11/358 (3%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K++CKGVPTVDMDN+C +EEK
Sbjct: 249 MLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEK 308
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG++YLFRGRNYNYRTRPQYP+MLWKPAAPVYPKLIQEAPEGLTK EA+EL
Sbjct: 309 TGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANEL 368
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGK+LLPICKLAKNGVY++LV DVR+AFEGS LVK++C GMH SDYKKLGAKLKELVP
Sbjct: 369 RMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVP 428
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPE---PPSFSNPVDLDIAGDADGSGTPSD--DPSQGT 235
CVLLSFD+EQILMWRGKDWKS+ + P S D G + S SD + + T
Sbjct: 429 CVLLSFDNEQILMWRGKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHT 488
Query: 236 IRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSRED 295
I++SPKM LW+RAI+S KAL+LDEI L PD+LL++VEEFE ISQA EHSYPA + S E+
Sbjct: 489 IKTSPKMKLLWERAIDSNKALMLDEIGLAPDELLERVEEFERISQATEHSYPAFITSSEE 548
Query: 296 GASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERL 353
+S + D +S+++ E + +DD +++ +D + +VPLGSLPVD IA++L
Sbjct: 549 VSSPA-----DSPESQDHSEANYNSDDDVGREEDLFD-NVDPLVPLGSLPVDIIAKKL 600
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/361 (66%), Positives = 284/361 (78%), Gaps = 17/361 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K++CKGVPTVDMDN+C +EEK
Sbjct: 248 MLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEK 307
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG++YLFRGRNYNYRTRPQYP+MLWKPAAPVYPKLIQEAPEGLTK EA+ L
Sbjct: 308 TGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVL 367
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGK+LLPICKLAKNGVY++LV DVR+AFEGS LVK++C GMH SDYKKLGAKLKELVP
Sbjct: 368 RMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVP 427
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDD--------PS 232
CVLLSFD+EQILMWRGKDWKS+ + S P A D G+P + +
Sbjct: 428 CVLLSFDNEQILMWRGKDWKSIISDDRSAPLP---SRASSNDSLGSPGESLENSDLLHGN 484
Query: 233 QGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLS 292
TI++SPKM LW+ AI+S KAL+LDEI L PDDLL+KVEEFE ISQA EHSYPA + S
Sbjct: 485 HHTIKTSPKMKLLWEHAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFITS 544
Query: 293 REDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAER 352
ED +S +D +S+++ E + +DD +++ +D ++ +VPLGSLPVD IA++
Sbjct: 545 SEDVSSP-----DDSPKSQDHTEANYNSDDDVGREEDLFD-NADPLVPLGSLPVDIIAKK 598
Query: 353 L 353
L
Sbjct: 599 L 599
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/361 (66%), Positives = 284/361 (78%), Gaps = 17/361 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K++CKGVPTVDMDN+C +EEK
Sbjct: 249 MLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEK 308
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG++YLFRGRNYNYRTRPQYP+MLWKPAAPVYPKLIQEAPEGLTK EA+ L
Sbjct: 309 TGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVL 368
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGK+LLPICKLAKNGVY++LV DVR+AFEGS LVK++C GMH SDYKKLGAKLKELVP
Sbjct: 369 RMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVP 428
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDD--------PS 232
CVLLSFD+EQILMWRGKDWKS+ + S P A D G+P + +
Sbjct: 429 CVLLSFDNEQILMWRGKDWKSIISDDCSAPLP---SRASSNDSLGSPGESLENSDLLHDN 485
Query: 233 QGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLS 292
TI++SPKM LW+ AI+S KAL+LDEI L PDDLL+KVEEFE ISQA EHSYPA + S
Sbjct: 486 HHTIKTSPKMKLLWEHAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFITS 545
Query: 293 REDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAER 352
ED +S +D +S+++ E + +DD +++ +D ++ +VPLGSLPVD IA++
Sbjct: 546 SEDVSSP-----DDSPKSQDHTEANYNSDDDVGREEDLFD-NADPLVPLGSLPVDIIAKK 599
Query: 353 L 353
L
Sbjct: 600 L 600
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/362 (68%), Positives = 289/362 (79%), Gaps = 16/362 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML+KP + DNRQVNLGRDG THNMLELIHSHWKRRRV K++CKGVPTVDMDNVCR LEEK
Sbjct: 212 MLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEK 271
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGG+II RVGG+VYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQE PEGLTK EA E
Sbjct: 272 TGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEALEF 331
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGKSL PICKL+KNGVY++LV+DVR+AFE S LVKV+C G+ SDYKK+GAKLKELVP
Sbjct: 332 RVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVP 391
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSD-----DPSQGT 235
CVLLSFDDEQILMWRG+DWKS + + P + + +IA + D S PSD DPS T
Sbjct: 392 CVLLSFDDEQILMWRGRDWKSRFVDNPLIPSLSETNIANELDPSDKPSDEQTVSDPSS-T 450
Query: 236 IRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSRED 295
I SSPKMISLWKRA+ES+KA++L+E++LGPDDLLKKVEE EG S AAEHSY A+VLS D
Sbjct: 451 I-SSPKMISLWKRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHSYTAMVLSNTD 509
Query: 296 GASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVV-PLGSLPVDHIAERLQ 354
GA+ +Y D + D E Y + D + DDE D +S D V P+G+LPVD I +L+
Sbjct: 510 GAAE---DYVD-----DKDRSEEYSDIDDDFDDECSDDESLDPVGPVGTLPVDKIVRKLR 561
Query: 355 RK 356
+
Sbjct: 562 ER 563
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/360 (66%), Positives = 287/360 (79%), Gaps = 11/360 (3%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML+KP + DNRQVNLGRDG THNMLELIHSHWKRRRV K++CKGVPTVDM+NVCR LEEK
Sbjct: 210 MLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEK 269
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGG+II RVGG+VYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQE PEGLTK EA E
Sbjct: 270 TGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEF 329
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGKSL PICKL+KNGVY++LV+DVR+AFE SSLVKV+C G+ SDYKK+GAKLKELVP
Sbjct: 330 RVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVP 389
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPS---QGTIR 237
CVLLSFDDEQILMWRG++WKS + + P + + + + D S PS++ + T
Sbjct: 390 CVLLSFDDEQILMWRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTI 449
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGA 297
SSPKMISLW+RA+ES+KA++L+E++LGPDDLLKKVEE EG S AAEH+Y A+VLS DGA
Sbjct: 450 SSPKMISLWQRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGA 509
Query: 298 SSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVV-PLGSLPVDHIAERLQRK 356
+ + +D S+ E+Y + D + DDE D +S D V P+GSLPVD I +L+ +
Sbjct: 510 AEDYVDEKDRSE-------EYYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKLRER 562
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/363 (61%), Positives = 257/363 (70%), Gaps = 50/363 (13%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K+ CKGVPT+DMDNVC LEEK
Sbjct: 70 MLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEK 129
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGKII RVGG+VYLFRGRNYNY L
Sbjct: 130 TGGKIIHRVGGVVYLFRGRNYNY------------------------------------L 153
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
+G++L+PIC+L KNGVY++LV+DVR+AFEGS LVK++CKGMHASDYKK+GAKLKE VP
Sbjct: 154 ANEGENLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKESVP 213
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GTIR 237
CVLLSFDDEQIL WRG WKSMY PSF PV D+A +GSG P + + +
Sbjct: 214 CVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGVPKSNHHRLDTKAVS 273
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGA 297
+SPKM+SLWK AIES+KAL+LDEI LGPD LLK VEEFEGISQA EHSYPALV+S EDG
Sbjct: 274 ASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGT 333
Query: 298 SSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSS-----DVVPLGSLPVDHIAER 352
+ AE+E G SE+Y EDE Y NDDD+ Y + S VPLGSLPVD +A++
Sbjct: 334 GGTKAEHE-GYNSEDYSEDEMY-----NDDDDEYLVNESLEEMESPVPLGSLPVDLLAKQ 387
Query: 353 LQR 355
L R
Sbjct: 388 LDR 390
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 271/369 (73%), Gaps = 17/369 (4%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 242 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 301
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGR+Y+ +TRP+YPLMLWKPA PVYPKLI+EAP+G TK EADE+R
Sbjct: 302 GGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMR 361
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ LLPICKLAKNG+Y+TLV+DVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 362 RKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 421
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFDDEQILM RGK+WKS Y +P + V +L + + S SD +Q IR
Sbjct: 422 VLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIRE 481
Query: 239 --SPKMISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LWK A++S+ AL+LD+ NL PD LL VEEF SQA EHS+PAL+++
Sbjct: 482 VLRPKMFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTN 541
Query: 294 EDGASSSM-AEY---EDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLP 345
D ++ S+ AEY E + +E + D DD+ F D D VPLGSLP
Sbjct: 542 GDASTDSLSAEYMNDEPETSVAGNEEGQLEQSPDLRDDEHF-DVDMFERLESSVPLGSLP 600
Query: 346 VDHIAERLQ 354
+D + ERL
Sbjct: 601 IDSMIERLN 609
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 274/370 (74%), Gaps = 19/370 (5%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 240 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 299
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQEAPEGLTK EADE+R
Sbjct: 300 GGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMR 359
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
R+GK LLPICKLAKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 360 RRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 419
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFD+EQILM+RGK+WKS YP+P + + ++ ++ D S +DD + +R
Sbjct: 420 VLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVRE 479
Query: 239 --SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LW AIES+ AL+LD+ L PD LL +VE+F SQA EHS+PA++++
Sbjct: 480 VLRPKMFELWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQAVEHSFPAVLVAN 539
Query: 294 EDGASSSM-AEY-----EDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSL 344
++ + AEY E G+ Q + E ED+ +DD +SS VPLG+L
Sbjct: 540 DESNPDVLNAEYTEDEPETGTLEPQQHEFTESSDVAEDNHFEDDMLKRLESS--VPLGAL 597
Query: 345 PVDHIAERLQ 354
P+D + ++L
Sbjct: 598 PIDAVVKQLN 607
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 273/370 (73%), Gaps = 19/370 (5%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 218 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 277
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQEAPEGLTK EADE+R
Sbjct: 278 GGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMR 337
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
R+GK LLPICKLAKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 338 RRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 397
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFD+EQILM+RGK+WKS YP+P + + ++ ++ D S +DD + +R
Sbjct: 398 VLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVRE 457
Query: 239 --SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LW AIES+ AL+LD+ L PD LL +VE+F SQ EHS+PA++++
Sbjct: 458 VLRPKMFELWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVAN 517
Query: 294 EDGASSSM-AEY-----EDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSL 344
++ + AEY E G+ Q + E EDD +DD +SS VPLG+L
Sbjct: 518 DESNPDVLNAEYTEDEPETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESS--VPLGAL 575
Query: 345 PVDHIAERLQ 354
P+D + ++L
Sbjct: 576 PIDAVVKQLN 585
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 273/370 (73%), Gaps = 19/370 (5%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 238 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 297
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQEAPEGLTK EADE+R
Sbjct: 298 GGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMR 357
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
R+GK LLPICKLAKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 358 RRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 417
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFD+EQILM+RGK+WKS YP+P + + ++ ++ D S +DD + +R
Sbjct: 418 VLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVRE 477
Query: 239 --SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LW AIES+ AL+LD+ L PD LL +VE+F SQ EHS+PA++++
Sbjct: 478 VLRPKMFELWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVAN 537
Query: 294 EDGASSSM-AEY-----EDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSL 344
++ + AEY E G+ Q + E EDD +DD +SS VPLG+L
Sbjct: 538 DESNPDVLNAEYTEDEPETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESS--VPLGAL 595
Query: 345 PVDHIAERLQ 354
P+D + ++L
Sbjct: 596 PIDAVVKQLN 605
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 270/369 (73%), Gaps = 17/369 (4%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 242 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 301
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGR+Y+ +TRP+YPLML KPA PVYPKLI+EAP+G TK EADE+R
Sbjct: 302 GGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLRKPATPVYPKLIKEAPDGFTKEEADEMR 361
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ LLPICKLAKNG+Y+TLV+DVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 362 RKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 421
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFDDEQILM RGK+WKS Y +P + V +L + + S SD +Q IR
Sbjct: 422 VLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIRE 481
Query: 239 --SPKMISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LWK A++S+ AL+LD+ NL PD LL VEEF SQA EHS+PAL+++
Sbjct: 482 VLRPKMFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTN 541
Query: 294 EDGASSSM-AEY---EDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLP 345
D ++ S+ AEY E + +E + D DD+ F D D VPLGSLP
Sbjct: 542 GDASTDSLSAEYMNDEPETSVAGNEEGQLEQSPDLRDDEHF-DVDMFERLESSVPLGSLP 600
Query: 346 VDHIAERLQ 354
+D + ERL
Sbjct: 601 IDSMIERLN 609
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/368 (55%), Positives = 272/368 (73%), Gaps = 16/368 (4%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 244 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 303
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+++RGR+Y+ +TRP YPLMLWKPA PVYPKLI+E PEGLTK EADE+R
Sbjct: 304 GGKVIHRVGGVVFVYRGRHYDPKTRPHYPLMLWKPATPVYPKLIKEVPEGLTKEEADEMR 363
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ LLPICKLAKNG+Y+TLV+DVR+AFEG+ LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 364 RKGRDLLPICKLAKNGIYITLVKDVRDAFEGNDLVKIDCEGLNPSDYKKIGAKLRDLVPC 423
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFDDEQILM+RGK+WKS Y +P + V +L ++ D + S SD +Q IR
Sbjct: 424 VLLSFDDEQILMYRGKEWKSRYSKPLTLIPKVPKNNLAMSSDMNSSDEVSDANTQVAIRE 483
Query: 239 --SPKMISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LWK A++S+ AL+LD+ +L PD LL VEEF SQA EHS+PAL+++
Sbjct: 484 VLRPKMFKLWKSAVDSSLALLLDDAEANDLTPDSLLTLVEEFSVTSQAVEHSFPALLVTN 543
Query: 294 EDGASSSM-AEYEDGSQSENY----DEDEFYPEDDFNDDDEF---YDSDSSDVVPLGSLP 345
+ + S+ AEY + +SE +E + D + D+ F VPLGSLP
Sbjct: 544 GEVNTESLSAEYINDDESETSIAGNEEGQLEQSPDLSGDEHFELDMLERLESSVPLGSLP 603
Query: 346 VDHIAERL 353
+D + E+L
Sbjct: 604 IDGMIEQL 611
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/365 (56%), Positives = 267/365 (73%), Gaps = 13/365 (3%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ V K++C+GVPTVDM+N+C LEEK+
Sbjct: 240 LVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNLCYHLEEKS 299
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQ+APEGLT EA E+R
Sbjct: 300 GGKVIKRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQQAPEGLTVEEAAEMR 359
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
R+G+ LLPI KLAKNG+Y+ LV+DV++AFEG+ LVK++CKG+ SDYKK+GAKL++LVPC
Sbjct: 360 RRGQILLPILKLAKNGIYINLVKDVQDAFEGNDLVKIDCKGLEPSDYKKIGAKLRDLVPC 419
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFD EQIL++RGK WKS Y +P + V +L ++ D +G + + TIR
Sbjct: 420 VLLSFDKEQILIYRGKGWKSRYLKPLTPFPKVEKNNLAVSSVVDSTGESAGASNNVTIRE 479
Query: 239 --SPKMISLWKRAIESTKALVL--DEIN-LGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
P+M LWKRAIES+ AL L DE N L PD LL +VEEF SQA EHS+PAL++
Sbjct: 480 VLRPRMFKLWKRAIESSIALSLDDDETNALTPDTLLVRVEEFSVTSQAVEHSFPALLVGN 539
Query: 294 EDGASSSMAEYEDGSQSE--NYDEDEFYPEDDFNDDD--EFYDSDS-SDVVPLGSLPVDH 348
G ++ E E+GS E++F D DDD E+Y + PLGSLP+D
Sbjct: 540 VKGGPEAVNESENGSDDGIIRPQENQFEKSLDAGDDDHFEYYMLERLESSAPLGSLPIDS 599
Query: 349 IAERL 353
+ E+L
Sbjct: 600 VMEQL 604
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/364 (55%), Positives = 263/364 (72%), Gaps = 12/364 (3%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 241 LVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 300
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQ APEGLT EA E+R
Sbjct: 301 GGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQLAPEGLTIEEAAEMR 360
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+G++LLPI KLAKNG+YL LV+DVR+AFEG+ LVK+NC+G+ SDYKK+GAKL++LVPC
Sbjct: 361 IRGQNLLPIFKLAKNGIYLNLVKDVRDAFEGNDLVKINCEGLEPSDYKKIGAKLRDLVPC 420
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
+LLSFD+EQIL++RGK+WKS Y +P + V DL ++ A S +D IR
Sbjct: 421 ILLSFDNEQILIYRGKEWKSRYSKPLTLIPKVQKSDLSVSSFASSSDESTDASDNVAIRE 480
Query: 239 --SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
P+M LWKRAIES+ AL LD+ L PD LL +VEEF SQA EHS+PAL++
Sbjct: 481 VLRPRMFKLWKRAIESSIALSLDDNEADALTPDALLARVEEFSITSQAVEHSFPALLVGN 540
Query: 294 E-DGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEF-YD--SDSSDVVPLGSLPVDHI 349
+ ++ E E ++ N ++F D ++DD F YD PLGSLP+D +
Sbjct: 541 SPEVVNAGYMEDESEDETGNPQVNQFEQSPDVSEDDPFEYDMLERLESSAPLGSLPIDSV 600
Query: 350 AERL 353
++L
Sbjct: 601 VDQL 604
>gi|147771140|emb|CAN74182.1| hypothetical protein VITISV_034260 [Vitis vinifera]
Length = 306
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/302 (65%), Positives = 229/302 (75%), Gaps = 24/302 (7%)
Query: 59 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEAD 118
EKTGGKII RVGG+VYLFRGRNYNYRTRPQYP+MLWKPAAPVYPKLIQEAPEGLTK EAD
Sbjct: 19 EKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEAD 78
Query: 119 ELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKEL 178
ELR KGK+L+PIC+L KNGVY++LV+DVR+AFEGS LVK++CKGMHASDYKK+GAKLK
Sbjct: 79 ELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLK-- 136
Query: 179 VPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GT 235
IL WRG WKSMY PSF PV D+A +GSG P +
Sbjct: 137 ------------ILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGIPKSXHHRLDTKA 184
Query: 236 IRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSRED 295
+ +SPKM+SLWK AIES+KAL+LDEI LGPD LLK VEEFEGISQA EHSYPALV+S ED
Sbjct: 185 VSASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVVEEFEGISQATEHSYPALVMSSED 244
Query: 296 GASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLPVDHIAE 351
G + AE E G SE+Y EDE Y +D +DDDE+ ++S VPLGSLPVD +A+
Sbjct: 245 GTGGTKAEXE-GYNSEDYSEDEMY--NDDDDDDEYLVNESLEEMESPVPLGSLPVDLLAK 301
Query: 352 RL 353
+L
Sbjct: 302 QL 303
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 143/206 (69%), Positives = 178/206 (86%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+L++ LK RQ+N+GRDGLTHNML+ IH+HWKRRRV KIKC GV TVDMDNVC++LEE+
Sbjct: 259 ILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNVCQQLEER 318
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGGK+I+R GG+VYLFRGRNYNYRTRP++PLMLWKP PVYP+LI+ APEGLT EA E+
Sbjct: 319 TGGKVIYRKGGVVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLIKRAPEGLTLEEASEM 378
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
RRKG+ L+PICKLAKNGVY LV++VR AFE LV+++C+G++ SDY+K+GAKLKELVP
Sbjct: 379 RRKGRKLIPICKLAKNGVYCNLVKEVREAFEECELVRIDCQGVNGSDYRKVGAKLKELVP 438
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEP 206
C+L+SF+ E ILMWRG+DWKS +P
Sbjct: 439 CLLISFEHEHILMWRGRDWKSSMIKP 464
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 170/294 (57%), Positives = 205/294 (69%), Gaps = 15/294 (5%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV K+ RQ+NLGRDGLTHNML L+H HWKRRRV K+KCKGVPTVDMDNVCR LEEKT
Sbjct: 99 LVTKARKEPRQINLGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNVCRVLEEKT 158
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII R GG VYLFRGRNYNY+TRP PLMLWKP AP+YPKLI++AP GLT EA+ LR
Sbjct: 159 GGKIILRQGGAVYLFRGRNYNYKTRPVIPLMLWKPPAPIYPKLIEKAPAGLTIEEANNLR 218
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+ G+ L P+C L KNGVY+ LVRDVRNAF+ LVKV+CK M+ SDYKK+GAKLK+LVPC
Sbjct: 219 KLGRELPPVCHLGKNGVYVNLVRDVRNAFKVDDLVKVDCKNMNPSDYKKIGAKLKDLVPC 278
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQGTIR---- 237
VLLSF+ E ILMWRG + + SN V D +G+A G +R
Sbjct: 279 VLLSFERESILMWRGPESLT------ESSNSVQGDSSGEAQPDFNQELPEDGGNVRVEMD 332
Query: 238 -----SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSY 286
+ + SL++ A++S +ALVL+E L PD LL+ V+ G + A Y
Sbjct: 333 PEVEKAVREFESLYQGALDSEQALVLEESELDPDTLLQVVKSRFGGAFGAPAKY 386
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/231 (65%), Positives = 184/231 (79%), Gaps = 7/231 (3%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV LK RQ+N+GRDGLTHNML+ IH+HWKRRRV KIKCKGV TVDMDNVC++LEE+T
Sbjct: 256 LVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCQQLEERT 315
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII+R GG++YLFRGRNYNYR RP++PLMLWKP PVYP+LIQ APEGLT EA +R
Sbjct: 316 GGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKPVTPVYPRLIQRAPEGLTLQEASGMR 375
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
KG+ L+PICKL KNGVY LVR+VR AFE LV++NC+GM+ SD++K+GAKL++LVPC
Sbjct: 376 NKGRKLIPICKLGKNGVYRDLVRNVREAFEECELVRINCQGMNGSDFRKIGAKLRDLVPC 435
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV-DLDIAGDADGSGTPSDDP 231
VL+SF+ E ILMWRG+DWKS SF+ PV D D A ++ G S P
Sbjct: 436 VLISFECEHILMWRGRDWKS------SFTKPVNDGDEAKNSSIDGATSATP 480
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 138/204 (67%), Positives = 175/204 (85%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV+ LK +RQ+NLGRDG HNML+ IH+HWKRRRV KIKC GV TVDMDNVC++LEEKT
Sbjct: 180 LVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKT 239
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+R GG++YLFRGRNYN++TRP++PLMLWKP PVYP+LIQ+ PEGLT EA E+R
Sbjct: 240 GGKVIYRRGGVIYLFRGRNYNHKTRPRFPLMLWKPVPPVYPRLIQQVPEGLTLEEATEMR 299
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG++L PICKL KNGVY LV +VR AFE LV+VNC+G++ SDY+K+GAKL++LVPC
Sbjct: 300 QKGRTLTPICKLGKNGVYYNLVNNVREAFEECELVRVNCQGLNKSDYRKIGAKLRDLVPC 359
Query: 182 VLLSFDDEQILMWRGKDWKSMYPE 205
LLS+++E ILMWRG++WKS +P+
Sbjct: 360 TLLSYENEHILMWRGRNWKSSFPD 383
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 140/205 (68%), Positives = 175/205 (85%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV+ +K RQ+N+GRDGLTHNML+ IH+HWKRRRV KIKCKGV TVDMDNV ++LEEKT
Sbjct: 252 LVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKT 311
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+ GG+++LFRGRNYNYR RP++PLMLWKP PVYP+L+Q APEGLT EA +R
Sbjct: 312 GGKVIYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMR 371
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG+ L+PICKLAKNGVY LV +VR AFE LV++NC+G++ASDY+K+GAKLK+LVPC
Sbjct: 372 KKGRKLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPC 431
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEP 206
VL+SF+ E ILMWRG DWK ++P+P
Sbjct: 432 VLISFEHEHILMWRGSDWKFLHPKP 456
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 140/205 (68%), Positives = 175/205 (85%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV+ +K RQ+N+GRDGLTHNML+ IH+HWKRRRV KIKCKGV TVDMDNV ++LEEKT
Sbjct: 252 LVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKT 311
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+ GG+++LFRGRNYNYR RP++PLMLWKP PVYP+L+Q APEGLT EA +R
Sbjct: 312 GGKVIYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMR 371
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG+ L+PICKLAKNGVY LV +VR AFE LV++NC+G++ASDY+K+GAKLK+LVPC
Sbjct: 372 KKGRKLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPC 431
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEP 206
VL+SF+ E ILMWRG DWK ++P+P
Sbjct: 432 VLISFEHEHILMWRGSDWKFLHPKP 456
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 229/367 (62%), Gaps = 14/367 (3%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV TVDMDNVC++LEEK
Sbjct: 193 LVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKV 252
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I GG+++LFRGRNYNYRTRP YPLMLWKPAAPVYP+L+++ P+GLT EA+++R
Sbjct: 253 GGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMR 312
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
++G+ L PICKL KNGVYL LV+ VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 313 KRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 372
Query: 182 VLLSFDDEQILMWRGKDWKSMYP--EPPSFSNPVDLDIAGDADGSG---TPSDDPSQGTI 236
LLSF+ E ILMWRG DWKS P E F D + GSG TP + + T
Sbjct: 373 TLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQILNSKEAGSGSALTPIELVNNATS 432
Query: 237 RSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDG 296
+I ++ +S K+ + + LG V EGI + + S +
Sbjct: 433 LKKCNLIEGAEKLEDSMKSSFENGMILGSACANPGVCNSEGIDGTESSADAPIEFSPSNS 492
Query: 297 A-----SSSMAEYEDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDH 348
A S + Y S +SEN + E YP D + ++ D + +GS H
Sbjct: 493 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYP-DRCGNSEQSPDVPEALTCLMGSSDEIH 551
Query: 349 IAERLQR 355
E ++R
Sbjct: 552 ELETMRR 558
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 229/367 (62%), Gaps = 14/367 (3%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV TVDMDNVC++LEEK
Sbjct: 193 LVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKV 252
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I GG+++LFRGRNYNYRTRP YPLMLWKPAAPVYP+L+++ P+GLT EA+++R
Sbjct: 253 GGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMR 312
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
++G+ L PICKL KNGVYL LV+ VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 313 KRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 372
Query: 182 VLLSFDDEQILMWRGKDWKSMYP--EPPSFSNPVDLDIAGDADGSG---TPSDDPSQGTI 236
LLSF+ E ILMWRG DWKS P E F D + GSG TP + + T
Sbjct: 373 TLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQILNSKEAGSGSALTPIELVNNATS 432
Query: 237 RSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDG 296
+I ++ +S K+ + + LG V EGI + + S +
Sbjct: 433 LKKCNLIEGAEKLEDSMKSSFENGMILGSACGNPGVCNSEGIDGTESSADAPIEFSPSNS 492
Query: 297 A-----SSSMAEYEDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDH 348
A S + Y S +SEN + E YP D + ++ D + +GS H
Sbjct: 493 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYP-DRCGNSEQSPDVPEALTCLMGSSDEIH 551
Query: 349 IAERLQR 355
E ++R
Sbjct: 552 ELETMRR 558
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 138/205 (67%), Positives = 172/205 (83%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV LK RQ+N+GRDGLTHNML IH WKRRRV KIKCKGV TVDMDNVC +LEEK
Sbjct: 251 LVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKI 310
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+R GG+++LFRGRNYN+RTRP++PLMLWKP APVYP+LIQ+ PEGLT+ EA +R
Sbjct: 311 GGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMR 370
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ L+PICKL KNGVY LV++V+ AFE LV+++C+GM SD++K+GAKLK+LVPC
Sbjct: 371 RKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPC 430
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEP 206
VL+SF++EQIL+WRG++WKS P
Sbjct: 431 VLVSFENEQILIWRGREWKSSLTTP 455
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 137/204 (67%), Positives = 169/204 (82%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK +K RQ+N+GRDGLTHNML+ IH+HWKRRR KI+CKGV TVDMDNVC +LEE+T
Sbjct: 209 LVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMDNVCHQLEERT 268
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII R GG++YLFRGRNYNY+TRP +PLMLWKP PVYP+L+Q PEGLT EA ++R
Sbjct: 269 GGKIIHRKGGVLYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLVQRVPEGLTLEEATKMR 328
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG +L+PICKL KNGVY LV+ VR AFE LV++NC+G++ SDY+K+GAKL++LVPC
Sbjct: 329 QKGSTLIPICKLGKNGVYCDLVKTVREAFEECELVRINCQGLNKSDYRKIGAKLRDLVPC 388
Query: 182 VLLSFDDEQILMWRGKDWKSMYPE 205
LLSF+ E ILMWRG +WKS P+
Sbjct: 389 TLLSFEYEHILMWRGPNWKSSIPD 412
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 169/203 (83%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IH+HWKR+RV KIKCKGV TVDMDNVC++LEE+
Sbjct: 191 LVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNVCQQLEERV 250
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I R GG+V+LFRGRNYNYRTRP +PLMLWKPAAPVYP+L++ P+GLT EA E+R
Sbjct: 251 GGKVIHRQGGVVFLFRGRNYNYRTRPVFPLMLWKPAAPVYPRLVKTVPDGLTSDEATEMR 310
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG+ L P+CKL KNGVY LV +VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 311 KKGRQLTPVCKLGKNGVYANLVNEVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 370
Query: 182 VLLSFDDEQILMWRGKDWKSMYP 204
+LLSF+ E ILMWRG DW+S P
Sbjct: 371 ILLSFEFEHILMWRGNDWRSSLP 393
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 170/200 (85%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV LK RQ+N+GRDGLTHNML IH WKRRRV KIKCKGV TVDMD VC +LEEK
Sbjct: 251 LVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDKVCEQLEEKI 310
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+R GG+++LFRGRNYN+RTRP++PLMLWKP APVYP+LIQ+ PEGLT EA E+R
Sbjct: 311 GGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTLQEATEMR 370
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ L+PICKL KNGVY LV++V+ AFE LV+++C+GM SD++K+GAKLK+LVPC
Sbjct: 371 RKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPC 430
Query: 182 VLLSFDDEQILMWRGKDWKS 201
VL+SF++EQIL+WRG++WKS
Sbjct: 431 VLISFENEQILIWRGREWKS 450
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 134/203 (66%), Positives = 171/203 (84%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
L++ + NRQ+N+GRDGLTHNMLE IH+ WKRRRV KIKCKGV TVDMDNV ++LEE+T
Sbjct: 260 LIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERT 319
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII+ GG +YL+RGRNYNY+TRP++PLMLWKPAAPVYP+L++ P+GLT E E+R
Sbjct: 320 GGKIIYSRGGALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDGLTLEEVTEMR 379
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG+ L+PICKL KNGVY LV+ VR AFE LV++NC+G++ SD++K+GAKLK+LVPC
Sbjct: 380 KKGRKLIPICKLGKNGVYSALVKHVREAFEECELVRINCQGLNGSDFRKIGAKLKDLVPC 439
Query: 182 VLLSFDDEQILMWRGKDWKSMYP 204
VL+SF+ E IL+WRG+DWKS P
Sbjct: 440 VLISFESEHILLWRGRDWKSSLP 462
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 166/203 (81%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV TVDMDN+C++LEEK
Sbjct: 193 LVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNICQQLEEKV 252
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I R GG+++LFRGRNYNYRTRP +PLMLWKP APVYP+L+ + P GLT EA E+R
Sbjct: 253 GGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMR 312
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+G+ L PICKL KNGVY LV+ VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 313 ARGRQLPPICKLGKNGVYANLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 372
Query: 182 VLLSFDDEQILMWRGKDWKSMYP 204
+LLSF+ E ILMWRG DWKS P
Sbjct: 373 ILLSFEFEHILMWRGSDWKSSLP 395
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 163/203 (80%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV T+DMDN+C +LEEK
Sbjct: 193 LVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKV 252
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I R GG+++LFRGRNYNYRTRP +PLMLWKP APVYP+L+ + P GLT EA E+R
Sbjct: 253 GGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMR 312
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+G L PICKL KNGVY LV VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 313 TRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 372
Query: 182 VLLSFDDEQILMWRGKDWKSMYP 204
+LLSF+ E ILMWRG DWKS P
Sbjct: 373 ILLSFEFEHILMWRGSDWKSSLP 395
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 163/203 (80%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV T+DMDN+C +LEEK
Sbjct: 79 LVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKV 138
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I R GG+++LFRGRNYNYRTRP +PLMLWKP APVYP+L+ + P GLT EA E+R
Sbjct: 139 GGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMR 198
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+G L PICKL KNGVY LV VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 199 TRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 258
Query: 182 VLLSFDDEQILMWRGKDWKSMYP 204
+LLSF+ E ILMWRG DWKS P
Sbjct: 259 ILLSFEFEHILMWRGSDWKSSLP 281
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 127/205 (61%), Positives = 167/205 (81%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
L+K K +RQ+N+GRDGLTHNMLE IH++W RR KIKC+GV TVDMDNVC++LEE+T
Sbjct: 247 LIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCTVDMDNVCQQLEERT 306
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII+R G VYLFRG+NYNY TRP++P M WKP +PVYP+LI+ PEGLT +A E+R
Sbjct: 307 GGKIIYRQAGTVYLFRGKNYNYETRPRFPFMRWKPVSPVYPRLIKRVPEGLTLEKATEMR 366
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+KG+ L+PICKL KNGVY LV ++R AFE LV++NC+ ++ SDY+++GAKLK+LVPC
Sbjct: 367 QKGRDLMPICKLGKNGVYWDLVTNIREAFEECELVRINCQELNTSDYRRIGAKLKDLVPC 426
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEP 206
LLSF+++ ILMWRG++W+ P+P
Sbjct: 427 ALLSFENDHILMWRGQNWRPSLPDP 451
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 138/195 (70%), Positives = 162/195 (83%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV K++RQ+NLGRDG THNML +H +WKRR+V++IKCKGVPTVDMDNVC LE+KT
Sbjct: 99 LVMQCQKEDRQLNLGRDGFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKT 158
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII R GG+VYLFRGRNYNY TRP+ PLMLW+P APVYPKLIQ APEGLT EAD LR
Sbjct: 159 GGKIISRAGGVVYLFRGRNYNYNTRPKIPLMLWRPPAPVYPKLIQRAPEGLTVEEADSLR 218
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
R+G+ + IC L KNGVYL LVRDVRNAF+ +LVKV+C+ M+ D +K+GAKLK+LVPC
Sbjct: 219 RRGRKIPAICHLGKNGVYLNLVRDVRNAFQADNLVKVDCEKMNTHDLRKIGAKLKDLVPC 278
Query: 182 VLLSFDDEQILMWRG 196
VLLSFD E ILMW+G
Sbjct: 279 VLLSFDHECILMWKG 293
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/261 (52%), Positives = 191/261 (73%), Gaps = 4/261 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K++RQVN+G+DGLTHNML+LIH HWKRRRVIK++CKGVPT+DMDNVC +E+KTGGKII
Sbjct: 108 KEHRQVNIGKDGLTHNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQ 167
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG +YLFRGRNYN R RP+ PLM+WKP P+YP+LIQ+AP GL+ AD LRR+G+ +
Sbjct: 168 RHGGSIYLFRGRNYNPRYRPEIPLMMWKPPVPIYPRLIQQAPAGLSVEHADYLRRRGRRV 227
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
P+ KL++NGVYL LV +V++AFE LVK++C+GM+ +D +K+GAKLKEL+ VLLSF+
Sbjct: 228 KPLTKLSRNGVYLHLVNEVKSAFEVDELVKLDCRGMNIADVRKIGAKLKELLGIVLLSFE 287
Query: 188 DEQILMWRGKDWKSMYPEPPS-FSNPVDLDIAGDADGSGTPSD-DPSQGTIRSSPKMISL 245
D +LMWRG + + F + ++D S P+ DP+ ++++ ++ +L
Sbjct: 288 DNCVLMWRGPAKLTEGEQATQDFIRQSVFEGKENSDASEEPNQVDPA--LLQAAKELENL 345
Query: 246 WKRAIESTKALVLDEINLGPD 266
W+RAI L++ L PD
Sbjct: 346 WERAINFGMVTTLEDNQLDPD 366
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 153/194 (78%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV + R+++LG+DGLTHNMLEL+H HWKRRRV +IKC GVPTVDMDN+CR +EEK+
Sbjct: 97 LVGRACAERRRLDLGKDGLTHNMLELLHRHWKRRRVCRIKCYGVPTVDMDNLCRVIEEKS 156
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGKII R G++Y+FRGRNYN+ TRPQ P+MLWKP AP+YP ++Q PEGL++ EAD LR
Sbjct: 157 GGKIIRRSQGMLYVFRGRNYNWNTRPQIPIMLWKPPAPIYPSVVQSVPEGLSEKEADNLR 216
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
G+ + +C+L + GVY+ LV+ V++AFE LVK++C+ + SD KK+GAKL++LVPC
Sbjct: 217 ALGRRIHCLCRLERAGVYINLVKMVKDAFEIDELVKIDCRELDRSDMKKVGAKLRDLVPC 276
Query: 182 VLLSFDDEQILMWR 195
V LSF+ +L+W+
Sbjct: 277 VPLSFERHFMLLWK 290
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 109/193 (56%), Positives = 150/193 (77%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K NR VNLGRDGLTHNML +IH+HWK ++IKC GVPT+DM+N+C +LE+KT GK+IF
Sbjct: 175 KTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIF 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGRNYN + RP P+MLWKP PVYP+LI+ +GL+ E E+R++G S+
Sbjct: 235 RHGGTLILYRGRNYNPKKRPVIPVMLWKPHEPVYPRLIKTTIDGLSIKETKEMRKRGLSV 294
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y LV VR+AF LV+++C+G+ DYKK+G KL+++VPC+L++F+
Sbjct: 295 PALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFE 354
Query: 188 DEQILMWRGKDWK 200
+EQI++WRGKD+K
Sbjct: 355 NEQIVVWRGKDYK 367
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 160/226 (70%), Gaps = 1/226 (0%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ RQ+NLGRDGLTHNML IH++WK ++IKC GVPTVDM NVC +LE+KTGG II
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGVIIH 239
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R G L+ L+RGR+YN + RP PLMLWKPA PVYP+LI+ EGLT E ++R+KG
Sbjct: 240 RHGSLLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHA 299
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y ++V VR+AF LV+++CKG+ SDYKK+G KL++LVPC+L+SFD
Sbjct: 300 PVLTKLAKNGYYASIVPMVRDAFLMDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFD 359
Query: 188 DEQILMWRGKDWKSMYPEP-PSFSNPVDLDIAGDADGSGTPSDDPS 232
EQI++WRGK+ S+ + SF + +D D A D +G PS
Sbjct: 360 KEQIIVWRGKEVGSLQDQTQKSFLSFIDSDGASVKDETGDQEQIPS 405
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/192 (58%), Positives = 145/192 (75%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ RQVNLGRDGLTHNML IH+HWK +++KC GVPTVDM NVC LE+KTGG II
Sbjct: 174 RTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 233
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGR+Y+ + RP PLMLWKPA P+YP+LI+ EGLT E +R+KG +
Sbjct: 234 RHGGQLILYRGRHYHPKKRPVIPLMLWKPAEPIYPRLIKTTIEGLTVVETKAMRKKGLHV 293
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF LV+++CKG+ SDY+K+G KL++LVPC+L+SFD
Sbjct: 294 PVLTKLAKNGYYASLVPMVRDAFLTDELVRIDCKGLPKSDYRKIGVKLRDLVPCILVSFD 353
Query: 188 DEQILMWRGKDW 199
EQI++WRGKD+
Sbjct: 354 KEQIIIWRGKDY 365
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/195 (56%), Positives = 149/195 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQ+NLGRDGLTHNML IH+HW+ ++IKC GVPTVDM NVC +LE+KT GKII
Sbjct: 169 KTKRQINLGRDGLTHNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 228
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGRNYN + RP PLMLW+P P+YP+LI+ +GL+ E E+R+KG ++
Sbjct: 229 RHGGFLVLYRGRNYNPKKRPFIPLMLWRPHEPIYPRLIKTTIDGLSIDETKEMRKKGLAV 288
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF LV+++CKG+ SDYKK+G KL++LVPC+L++FD
Sbjct: 289 PALTKLAKNGYYGSLVPMVRDAFLSCELVRIDCKGLERSDYKKIGCKLRDLVPCILVTFD 348
Query: 188 DEQILMWRGKDWKSM 202
EQI++WRGKD++ +
Sbjct: 349 KEQIVVWRGKDYQPL 363
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/226 (53%), Positives = 159/226 (70%), Gaps = 1/226 (0%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ RQ+NLGRDG THNML +H++WK ++IKC GVPTVDM NVC +LE+KTGG II
Sbjct: 181 RTKRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGLIIH 240
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R G L+ L+RGR+YN + RP PLMLWKPA PVYP+LI+ EGLT E ++R+KG +
Sbjct: 241 RHGSLLILYRGRHYNPKKRPVVPLMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHV 300
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF LV+++CKG+ SDYKK+G KL++LVPC+L+SFD
Sbjct: 301 PVLTKLAKNGYYASLVPMVRDAFLTDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFD 360
Query: 188 DEQILMWRGKDWKSMYPEP-PSFSNPVDLDIAGDADGSGTPSDDPS 232
EQI++WRG + S+ SF + +D D+A D +G PS
Sbjct: 361 KEQIIVWRGNEDGSLQDRTQKSFLSFIDSDVASVKDETGDQEQIPS 406
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/202 (55%), Positives = 152/202 (75%), Gaps = 5/202 (2%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K +Q+NLGRDGLTHNML IH+HWK ++IKC GVPTVDM NVC +LE+KT GKII
Sbjct: 173 KTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GL+ L+RGRNY+ + RP PLM+W+P P+YPKLI+ EGL+ E E+R+KG +L
Sbjct: 233 RHCGLLVLYRGRNYHPKKRPVIPLMMWRPHEPIYPKLIKTTIEGLSIEETKEMRKKGLAL 292
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF + LV+++C+G+ SDYKK+G KL++LVPC+L++F+
Sbjct: 293 PALTKLAKNGYYASLVPMVRDAFLVNELVRIDCQGLPKSDYKKIGCKLRDLVPCILVTFE 352
Query: 188 DEQILMWRGKDWKSMYPEPPSF 209
EQI++WRGKD+K PP +
Sbjct: 353 KEQIVVWRGKDYK-----PPEY 369
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 146/192 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ +Q+NLGRDGLTHNML IH+HWK +++KC GVPTVDM NVC +LE+KTGG II
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGR+YN + RP PLMLWKPA PVYP+LI+ EGLT E E+R+KG +
Sbjct: 233 RHGGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYV 292
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF LV+++ KG+ SDY+K+G KL++LVPC+++SFD
Sbjct: 293 PVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFD 352
Query: 188 DEQILMWRGKDW 199
EQI++WRGKD+
Sbjct: 353 KEQIIVWRGKDY 364
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 146/192 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ +Q+NLGRDGLTHNML IH+HWK +++KC GVPTVDM NVC +LE+KTGG II
Sbjct: 149 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 208
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGR+YN + RP PLMLWKPA PVYP+LI+ EGLT E E+R+KG +
Sbjct: 209 RHGGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYV 268
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF LV+++ KG+ SDY+K+G KL++LVPC+++SFD
Sbjct: 269 PVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFD 328
Query: 188 DEQILMWRGKDW 199
EQI++WRGKD+
Sbjct: 329 KEQIIVWRGKDY 340
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/184 (58%), Positives = 140/184 (76%)
Query: 16 GRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYL 75
GRDGLTHNML IH+HWK +++KC GVPTVDM NVC +LE+KTGG II R GG + L
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLIL 427
Query: 76 FRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAK 135
+RGR+YN + RP PLMLWKPA PVYP+LI+ EGLT E E+R+KG + + KLAK
Sbjct: 428 YRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAK 487
Query: 136 NGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWR 195
NG Y +LV VR+AF LV+++ KG+ SDY+K+G KL++LVPC+++SFD EQI++WR
Sbjct: 488 NGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWR 547
Query: 196 GKDW 199
GKD+
Sbjct: 548 GKDY 551
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/191 (58%), Positives = 143/191 (74%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ RQ+NLGRDGLTHNML IH+HWK +++KC GVPTVDM NVC LE+KTGG II
Sbjct: 179 RTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 238
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGR+Y+ + RP PLMLWKPA P+YP+LI+ EGLT E E+R+KG
Sbjct: 239 RHGGQLILYRGRHYHPKKRPVIPLMLWKPAEPIYPRLIKTTIEGLTVEETKEMRKKGLHA 298
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+ F LV+++CKG+ SDY+K+G KL++LVPC+L+SFD
Sbjct: 299 SVLTKLAKNGYYASLVPMVRDGFLTDELVRIDCKGLPKSDYRKIGVKLRDLVPCILVSFD 358
Query: 188 DEQILMWRGKD 198
EQI++WRGKD
Sbjct: 359 KEQIIVWRGKD 369
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 108/193 (55%), Positives = 148/193 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQ+NLGRDGLTHNML IH+HWK ++IKC GVPTVDM NVC +LE+KT GKII
Sbjct: 178 KTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIH 237
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R G + L+RGRNYN + RP PLM+W+P P+YP+LI+ +GL+ E E+R++G ++
Sbjct: 238 RHCGSLVLYRGRNYNPKKRPVIPLMMWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAV 297
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF + LV+++C+G+ SDYKK+G KL++LVPC+L++F+
Sbjct: 298 PALTKLAKNGYYASLVPMVRDAFLTNELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFE 357
Query: 188 DEQILMWRGKDWK 200
EQI++WRGKD+K
Sbjct: 358 KEQIVVWRGKDYK 370
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 105/193 (54%), Positives = 147/193 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ RQ+NLGRDGLTHNML IH+HWK ++IKC GVPTVDM NVC +LE+KT GK+I
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIH 239
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GGL+ L+RGRNY+ + RP PLMLW+P P+YP+LI+ +GL+ E E+R++G ++
Sbjct: 240 RQGGLLVLYRGRNYHPKKRPVIPLMLWRPHEPIYPRLIKTVIDGLSIEETKEMRKRGLAV 299
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF L++++C+G+ DYKK+G KL++ VPC+L++F+
Sbjct: 300 PALTKLAKNGYYGSLVPMVRDAFLTDELIRIDCQGLERRDYKKIGCKLRDFVPCILVTFE 359
Query: 188 DEQILMWRGKDWK 200
EQI++WRGKD+K
Sbjct: 360 KEQIVVWRGKDYK 372
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 104/188 (55%), Positives = 144/188 (76%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDNVC LE+K+GGK+++R
Sbjct: 157 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVVYRN 216
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ RP PLMLWKP AP+YPKL++ +GLT E E+R +G + LP
Sbjct: 217 INILLLYRGRNYDPENRPVIPLMLWKPYAPIYPKLVKNVADGLTFEETKEMRNRGLNSLP 276
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR+AFE +V+++CK + SD KK+G KLK+LVPCV + F DE
Sbjct: 277 LMKLTRNGVYVNVVDRVRDAFETEEVVRLDCKHVGMSDCKKIGVKLKDLVPCVPILFKDE 336
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 337 QIILWRGK 344
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 147/193 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K +Q+NLG DGLTHNML IH+HWK +++KC GVPTVDM NVC +LE+KT GKII
Sbjct: 173 KTKKQINLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GL+ L+RGRNY+ R RP PLMLWKP PVYP+LI+ +GL+ E E+R++G ++
Sbjct: 233 RHCGLLVLYRGRNYHPRNRPVIPLMLWKPHEPVYPRLIKTTIDGLSIEETKEMRKRGLAV 292
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KL++NG + +LV VR+AF S LV+++C+G+ SD KK+G KL++LVPC+L++FD
Sbjct: 293 PALTKLSRNGYFGSLVPMVRDAFLVSELVRIDCQGLDRSDSKKIGCKLRDLVPCILVTFD 352
Query: 188 DEQILMWRGKDWK 200
EQI++WRGKD+K
Sbjct: 353 KEQIVVWRGKDYK 365
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 144/192 (75%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DM+NVC LE+K GGKII+R
Sbjct: 166 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRN 225
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL++ +GLT E E+R +G +L P
Sbjct: 226 INIILLYRGRNYDPKNRPVVPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPP 285
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL KNGVY+ +V VR AF +V+++C + +SD K++G KL++LVPCV + F DE
Sbjct: 286 VMKLTKNGVYVNVVERVREAFRSEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDE 345
Query: 190 QILMWRGKDWKS 201
QI++W+GK+ S
Sbjct: 346 QIILWKGKNGSS 357
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 143/189 (75%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DM+NVC LE+K GGKII+R
Sbjct: 147 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRN 206
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL++ +GLT E E+R +G +L P
Sbjct: 207 INIILLYRGRNYDPKNRPVVPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPP 266
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL KNGVY+ +V VR AF +V+++C + +SD K++G KL++LVPCV + F DE
Sbjct: 267 VMKLTKNGVYVNVVERVREAFRSEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDE 326
Query: 190 QILMWRGKD 198
QI++W+GK+
Sbjct: 327 QIILWKGKN 335
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 143/188 (76%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNM++ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK+I+R
Sbjct: 162 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRN 221
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RPQ PLMLWKP AP+YP+L+Q +GLT + ELR G + P
Sbjct: 222 INILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSP 281
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +SD KK+G KL++LVPCV L F DE
Sbjct: 282 LMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDE 341
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 342 QIILWRGK 349
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 143/188 (76%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNM++ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK+I+R
Sbjct: 158 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRN 217
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RPQ PLMLWKP AP+YP+L+Q +GLT + ELR G + P
Sbjct: 218 INILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSP 277
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +SD KK+G KL++LVPCV L F DE
Sbjct: 278 LMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDE 337
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 338 QIILWRGK 345
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 143/188 (76%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNM++ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK+I+R
Sbjct: 163 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRN 222
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RPQ PLMLWKP AP+YP+L+Q +GLT + ELR G + P
Sbjct: 223 INILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSP 282
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +SD KK+G KL++LVPCV L F DE
Sbjct: 283 LMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDE 342
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 343 QIILWRGK 350
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 141/188 (75%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK++ R
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRS 218
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL+Q EGLT E ELR +G + P
Sbjct: 219 INIIILYRGRNYDPQKRPGVPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPP 278
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +D KK+G KL++LVPC+ + F DE
Sbjct: 279 LTKLTRNGVYVNVVDKVREAFKTVEVVRLDCTHVGTTDCKKIGVKLRDLVPCIPILFKDE 338
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 339 QIILWRGK 346
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 141/188 (75%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK++ R
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRS 218
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL+Q EGLT E ELR +G + P
Sbjct: 219 INIIILYRGRNYDPQKRPGVPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPP 278
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +D KK+G KL++LVPC+ + F DE
Sbjct: 279 LTKLTRNGVYVNVVDKVREAFKTVEVVRLDCTHVGTTDCKKIGVKLRDLVPCIPILFKDE 338
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 339 QIILWRGK 346
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 141/188 (75%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK+I+R
Sbjct: 163 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRS 222
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL+Q EGLT E ELR +G +
Sbjct: 223 INIIILYRGRNYDPKRRPGIPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPA 282
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + SD KK+G KL++LVPC+ + F DE
Sbjct: 283 LTKLTRNGVYVNVVDKVREAFKTVEVVRLDCTHVGTSDCKKIGVKLRDLVPCIPILFKDE 342
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 343 QIILWRGK 350
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 145/193 (75%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML +++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E +R+KG ++
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF S LV+++C G+ DYKK+GAKL++LVPC+L++FD
Sbjct: 295 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFD 354
Query: 188 DEQILMWRGKDWK 200
EQ+++WRGKD+K
Sbjct: 355 KEQVVIWRGKDYK 367
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/188 (54%), Positives = 140/188 (74%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GV T+DMDN+C LE+KTGGKII R
Sbjct: 162 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVATLDMDNICFHLEDKTGGKIIHRS 221
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL+Q EG+T E ELR +G + P
Sbjct: 222 INILILYRGRNYDPKQRPVIPLMLWKPLAPIYPKLVQSVAEGMTFEETKELRNRGLNSPP 281
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + SD KK+G KL++LVPCV + F DE
Sbjct: 282 LMKLTRNGVYVNVVDRVREAFQTVEVVRLDCTHVGTSDCKKIGVKLRDLVPCVPILFKDE 341
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 342 QIILWRGK 349
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 162/236 (68%), Gaps = 13/236 (5%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML I++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 176 KTKRQVNLGRDGLTHNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 235
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E +R+KG ++
Sbjct: 236 KHCGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 295
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF S LV+++C G+ DYKK+GAKL++LVPC+L++FD
Sbjct: 296 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLDRKDYKKIGAKLRDLVPCILVTFD 355
Query: 188 DEQILMWRGKDWKSMYPEPPS----FSNPVDLDIAGDADG----SGTPSDDPSQGT 235
EQ+++WRGK++K PP +S+ + + + D+DG S D P + T
Sbjct: 356 KEQVVIWRGKNYK-----PPKDDDEYSSFIHRESSIDSDGDLSCSRGAQDSPGETT 406
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 139/186 (74%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
RQ+NLG+ G+THNML IH+HWK+ V++IKC GVPT+DMDNVC LE+K+GGK+I+R
Sbjct: 161 RQINLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNI 220
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPI 130
++ L+RGRNY+ + P PLMLWKP AP+YP+L++ EGLT E E+R+ G + P+
Sbjct: 221 NILLLYRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPL 280
Query: 131 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190
KL +NGVY+ +V VR AF+ +VK++C + SD KK+G KL++LVPCV + F DEQ
Sbjct: 281 LKLTRNGVYVNVVERVREAFKTQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQ 340
Query: 191 ILMWRG 196
I++WRG
Sbjct: 341 IILWRG 346
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/188 (51%), Positives = 142/188 (75%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDN+C LE+K+GGKII+R
Sbjct: 162 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRH 221
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL++ + L+ E E+R +G + P
Sbjct: 222 INILLLYRGRNYDPKNRPAIPLMLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNSPP 281
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +SD K++G KL++LVPCV + F +E
Sbjct: 282 LMKLTRNGVYVNVVDRVREAFKFEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKNE 341
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 342 QIILWRGK 349
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 138/186 (74%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
RQ+NLG+ G+THNML IH+HWK+ ++IKC GVPT+DMDNVC LE+K+GGK+I+R
Sbjct: 161 RQINLGKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNI 220
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPI 130
++ L+RGRNY+ + P PLMLWKP AP+YP+L++ EGLT E E+R+ G + P+
Sbjct: 221 NILLLYRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPL 280
Query: 131 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190
KL +NGVY+ +V VR AF+ +VK++C + SD KK+G KL++LVPCV + F DEQ
Sbjct: 281 LKLTRNGVYVNVVERVREAFKTQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQ 340
Query: 191 ILMWRG 196
I++WRG
Sbjct: 341 IILWRG 346
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/188 (51%), Positives = 139/188 (73%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNM++ IH+HWK+ ++IKC GVPT+DMDN+C LEEK+GGKI++R
Sbjct: 157 SRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRH 216
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ ++RP PLMLWKP P+YP+L++ +GLT E E+R +G
Sbjct: 217 INILVLYRGRNYDPKSRPIIPLMLWKPYPPIYPRLVKNVADGLTFEETKEMRNRGIHSPA 276
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR FE +V+++C + SD K++G KLK+LVPCV + F DE
Sbjct: 277 LMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKDLVPCVPILFKDE 336
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 337 QIILWRGK 344
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 137/188 (72%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
RQ+NLG+ G+THNM++ IH+HWK+ ++IKC GVPT+DMDN+C LEEK+GGKI++R
Sbjct: 161 TRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRN 220
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ ++RP PLMLWKP P+YP+L++ +GL E E+R +G
Sbjct: 221 INILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPA 280
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR FE +V+++C + SD K++G KLKE+VPCV + F DE
Sbjct: 281 LMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDE 340
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 341 QIILWRGK 348
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 145/196 (73%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWK+ ++IKC GVPT+DMDNVC LE+K+GGKII+R
Sbjct: 203 SRQINLGKGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYRH 262
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP P+MLWKP AP++PKL++ +GL+ E E+R +G +
Sbjct: 263 INILLLYRGRNYDPKNRPVIPIMLWKPYAPIFPKLVKNVADGLSFEETKEIRNRGLNSPA 322
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +SD KK+G KL++LVPCV + F DE
Sbjct: 323 LMKLTRNGVYVYVVERVREAFQTEEVVRLDCTHVGSSDCKKIGVKLRDLVPCVPILFKDE 382
Query: 190 QILMWRGKDWKSMYPE 205
QI++WRGK + PE
Sbjct: 383 QIILWRGKRDQEQNPE 398
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 113/133 (84%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV+ +K RQ+N+GRDGLTHNML+ IH+HWKRRRV KIKCKGV TVDMDNV ++LEEKT
Sbjct: 252 LVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKT 311
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+ GG+++LFRGRNYNYR RP++PLMLWKP PVYP+L+Q APEGLT EA +R
Sbjct: 312 GGKVIYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMR 371
Query: 122 RKGKSLLPICKLA 134
+KG+ L+PICKL
Sbjct: 372 KKGRKLIPICKLG 384
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 122/182 (67%), Gaps = 13/182 (7%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML +++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E +R+KG ++
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 128 LPICKL-------------AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 174
+ KL AKNG Y +LV VR+AF S LV+++C G+ DYKK+GAK
Sbjct: 295 PALTKLGPYLFHAFLFLNSAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAK 354
Query: 175 LK 176
L+
Sbjct: 355 LR 356
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 96/126 (76%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK++ R
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVSRS 218
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RP PLMLWKP AP+YPKL+Q EGLT E ELR +G + P
Sbjct: 219 INIIILYRGRNYDPQKRPGVPLMLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPP 278
Query: 130 ICKLAK 135
+ KL+K
Sbjct: 279 LTKLSK 284
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%)
Query: 92 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 151
MLWKP APVYP+L+ + P GLT EA E+R +G L PICKL KNGVY LV VR AFE
Sbjct: 1 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 60
Query: 152 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 204
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS P
Sbjct: 61 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 113
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML +++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E +R+KG
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKG--- 291
Query: 128 LPICKLAKNGVYL 140
L + L K G YL
Sbjct: 292 LAVPALTKLGPYL 304
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 80/110 (72%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML +++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEA 117
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDET 284
>gi|147780327|emb|CAN67999.1| hypothetical protein VITISV_025803 [Vitis vinifera]
Length = 331
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 53/61 (86%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
MLVKP L NRQVNLGRDGLTHNMLELIHSHWKR+RV K++CKGVPT+DMDNVC LE
Sbjct: 203 MLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEHH 262
Query: 61 T 61
T
Sbjct: 263 T 263
>gi|414884471|tpg|DAA60485.1| TPA: hypothetical protein ZEAMMB73_919812, partial [Zea mays]
Length = 250
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLE 58
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV T+DMDN+C +LE
Sbjct: 193 LVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLE 249
>gi|297739072|emb|CBI28561.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 9/89 (10%)
Query: 269 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 328
LK VEEFEGISQA EHSYPALV+S EDG + AE+E G SE+Y EDE Y + DDD
Sbjct: 157 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEHE-GYNSEDYSEDEMYND----DDD 211
Query: 329 EFYDSDSSDV----VPLGSLPVDHIAERL 353
E+ ++S + VPLGSLPVD +A++L
Sbjct: 212 EYLVNESLEEMESPVPLGSLPVDLLAKQL 240
>gi|225425589|ref|XP_002265469.1| PREDICTED: uncharacterized protein LOC100248190 [Vitis vinifera]
Length = 330
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 9/89 (10%)
Query: 269 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 328
LK VEEFEGISQA EHSYPALV+S EDG + AE+E G SE+Y EDE Y + DDD
Sbjct: 244 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEHE-GYNSEDYSEDEMYND----DDD 298
Query: 329 EFYDSDSSDV----VPLGSLPVDHIAERL 353
E+ ++S + VPLGSLPVD +A++L
Sbjct: 299 EYLVNESLEEMESPVPLGSLPVDLLAKQL 327
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 32/222 (14%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
L+ ++ +G G+T ++E IH W+ V+K++ +G P+++M LEE+TGG +I
Sbjct: 353 LRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVI 412
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLML--------WKPAAPV------------------ 100
+R G V L+RG NYN R Y W P+
Sbjct: 413 WRSGRSVVLYRGMNYNLRCVQSYTQTTELGPRYKDWSGRGPIPVDADLLPGVVPGYKTPF 472
Query: 101 --YPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKV 158
P +++ L E LRR + P L +N + L + +E SS+ K+
Sbjct: 473 RLLPYMVKST---LRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKI 529
Query: 159 NCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
K G+ + ++ ++++L VLLS + E I+ +RG D+
Sbjct: 530 AIKRGVPNTCNDRMAEEIRKLTGGVLLSRNKEYIVFYRGNDF 571
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + ++ +H HWK R ++K+ KG + ++ LE ++GG +I G
Sbjct: 717 LGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTTKG 776
Query: 71 GLVYLFRGRNY 81
+ L+RG+NY
Sbjct: 777 YAIILYRGKNY 787
>gi|147867142|emb|CAN82651.1| hypothetical protein VITISV_024772 [Vitis vinifera]
Length = 131
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 269 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 328
LK VEEFEGISQA EHSYPALV+S EDG + AEYE G SE+Y EDE Y + +DDD
Sbjct: 44 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYE-GCNSEDYSEDEMY---NDDDDD 99
Query: 329 EFYDSDSSDV----VPLGSLPVDHIAERL 353
E+ ++S + VPLGSLPVD +A++L
Sbjct: 100 EYLVNESLEEMESPVPLGSLPVDLLAKQL 128
>gi|194695928|gb|ACF82048.1| unknown [Zea mays]
Length = 125
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 242 MISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGAS 298
M LWK A++S+ AL+LD+ NL PD LL VEEF SQA EHS+PAL+++ D ++
Sbjct: 1 MFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDAST 60
Query: 299 SSM-AEY---EDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLPVDHIA 350
S+ AEY E + +E + D DDE +D D VPLGSLP+D +
Sbjct: 61 DSLSAEYMNDEPETSVAGNEEGQLEQSPDLR-DDEHFDVDMFERLESSVPLGSLPIDSMI 119
Query: 351 ERLQRK 356
ERL +
Sbjct: 120 ERLNSE 125
>gi|147867140|emb|CAN82649.1| hypothetical protein VITISV_024770 [Vitis vinifera]
Length = 157
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 269 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 328
LK VEEFEGISQA EHSYPALV+S EDG + AE ++G SE+Y EDE Y + +DDD
Sbjct: 70 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAE-DEGYNSEDYSEDEMY---NDDDDD 125
Query: 329 EFYDSDSSDV----VPLGSLPVDHIAERL 353
E+ ++S + VPLGSLPVD +A++L
Sbjct: 126 EYLVNESLEEMESPVPLGSLPVDLLAKQL 154
>gi|413921150|gb|AFW61082.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 222
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 41/49 (83%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLE 58
+RQ+NLG+ G+THNML+ IH+HWKR ++IKC GVPT+DMDN+C LE
Sbjct: 159 SRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLE 207
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
L+ ++ +G G+T +++E IH WK V+K++ +G P+++M LE++TGG +I
Sbjct: 370 LRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVI 429
Query: 67 FRVGGLVYLFRGRNYNYRTRPQY 89
+R G V L+RG NYN++ Y
Sbjct: 430 WRSGRSVVLYRGMNYNFQCVQSY 452
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + ++ +H HWK R ++KI +G ++ LE ++ G +I G
Sbjct: 789 LGRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVLISLDKTTKG 848
Query: 71 GLVYLFRGRNYNYRTRPQ 88
++ +RG+NY RPQ
Sbjct: 849 YVIIFYRGKNYR---RPQ 863
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++N+G+ G+T ++ IH +W+R V+KI C+ + ++M LE KTGG ++
Sbjct: 177 IRLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVV 236
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 237 WRSGSKIILYRGPNYIY 253
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI + +V R LE ++GG ++ +
Sbjct: 601 LGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRS 660
Query: 71 GLVYLFRGRNYN--YRTRPQ 88
+ +FRG+NY R RP+
Sbjct: 661 FAIIIFRGKNYKRPSRLRPE 680
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+R V+KI+C+ + ++M LE KTGG +I+R G
Sbjct: 395 KKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSG 454
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 455 SYIILYRGANYKY 467
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K L+ + LGR G+ +E +H HWK R ++KI G D+ V R LE +
Sbjct: 988 MLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAE 1047
Query: 61 TGGKIIF--RV--GGLVYLFRGRNYN--YRTRPQYPL 91
+GG ++ RV G + ++RG+NY RPQ L
Sbjct: 1048 SGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLL 1084
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+R V+KI+C+ + ++M LE KTGG +I+R G
Sbjct: 203 KKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSG 262
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 263 SYIILYRGANYKY 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LGR G+ +E +H HWK R ++KI G D+ V R LE ++GG ++ RV G
Sbjct: 627 LGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKG 686
Query: 71 GLVYLFRGRNYN--YRTRPQYPL 91
+ ++RG+NY RPQ L
Sbjct: 687 YAIIMYRGKNYKRPASLRPQTLL 709
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
LT E LRR G+ L L +N L + +E + K+ K G+ ++ +
Sbjct: 405 LTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEM 464
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVD 214
+ +LK L LLS D E I+ +RGKD+ PP+ S+ ++
Sbjct: 465 MAEELKNLTGGTLLSRDREFIVFYRGKDFL-----PPAVSSAIE 503
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+R V+KI+C+ + ++M LE KTGG +I+R G
Sbjct: 203 KKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSG 262
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 263 SYIILYRGANYKY 275
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LGR G+ +E +H HWK R ++KI G D+ V R LE ++GG ++ RV G
Sbjct: 627 LGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKG 686
Query: 71 GLVYLFRGRNYN--YRTRPQYPL 91
+ ++RG+NY RPQ L
Sbjct: 687 YAIIMYRGKNYKRPASLRPQTLL 709
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 93 LWKPAAPVYPKLIQEAPEGL----TKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 148
L P Y + + P GL T E LRR G+ L L +N L +
Sbjct: 382 LLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIK 441
Query: 149 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPP 207
+E + K+ K G+ ++ + + +LK L LLS D E I+ +RGKD+ PP
Sbjct: 442 LWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFL-----PP 496
Query: 208 SFSNPVD 214
+ S+ ++
Sbjct: 497 AVSSAIE 503
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
L+ ++ +G G+T ++E IH W+ V+K++ +G P+++M LEE+TGG +I
Sbjct: 354 LRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVI 413
Query: 67 FRVGGLVYLFRGRNYNYRTRPQY 89
+R G V L+RG NYN R Y
Sbjct: 414 WRSGRSVVLYRGMNYNLRCVQSY 436
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + ++ +H HWK R ++K+ KG + ++ LE ++GG +I G
Sbjct: 772 LGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTTKG 831
Query: 71 GLVYLFRGRNY 81
+ L+RG+NY
Sbjct: 832 YAIILYRGKNY 842
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
+ + R++ +G+ G+T ++ IH W+R V+KI C+ + ++M LE KTGG ++
Sbjct: 175 IAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVV 234
Query: 67 FRVGGLVYLFRGRNYNY 83
+RVG + L+RG +Y Y
Sbjct: 235 WRVGSKIVLYRGADYKY 251
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + +G G+ +E +H HWK R ++KI CK + V R LE +
Sbjct: 590 MLRKIGLKMKPFLLMGERGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAE 649
Query: 61 TGGKIIFRVGGL-----VYLFRGRNYNYRTRP 87
+GG I+ V G+ + L+RG+NY TRP
Sbjct: 650 SGG-ILVAVEGVSKGYAIILYRGKNY---TRP 677
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
LT E L+R G+ L L +N + L + +E + K+ K G+ ++ +
Sbjct: 381 LTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEL 440
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ +LK L LLS D E I+++RGKD+
Sbjct: 441 MAQELKWLTGGTLLSRDREFIVLYRGKDF 469
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++N+G+ G+T ++ IH W+R V+KI C+ + ++M LE KTGG +++R G
Sbjct: 201 KKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSG 260
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 261 SKIILYRGPNYIY 273
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI + +V R LE ++GG ++ +
Sbjct: 622 LGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRS 681
Query: 71 GLVYLFRGRNYN--YRTRPQ 88
+ +FRG+NY R RP+
Sbjct: 682 FAIIIFRGKNYKRPSRLRPE 701
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+K++C+ V ++M LE KTGG +I
Sbjct: 156 IRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVI 215
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 216 WRSGSTIILYRGTNYTY 232
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 635 MLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAE 694
Query: 61 TGGKII----FRVGGLVYLFRGRNY 81
+GG ++ G + ++RG+NY
Sbjct: 695 SGGILVAVEKVSKGHAIIVYRGKNY 719
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+K++C+ V ++M LE KTGG +I
Sbjct: 156 IRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVI 215
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 216 WRSGSTIILYRGTNYTY 232
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
L+ ++ +G G+T +++E IH WK V+K++ +G P+++M LE++TGG +I
Sbjct: 366 LRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVI 425
Query: 67 FRVGGLVYLFRGRNYNYRTRPQY 89
+R G V L+RG NYN + Y
Sbjct: 426 WRSGRSVVLYRGMNYNLQCVQSY 448
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + ++ +H HWK R ++KI +G + ++ LE ++ G +I G
Sbjct: 785 LGRREVFDGTVQNMHLHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISLDKTSKG 844
Query: 71 GLVYLFRGRNYNYRTRPQ 88
+ +RG+NY RPQ
Sbjct: 845 YAIIFYRGKNYR---RPQ 859
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P I+ L E LRR + P L +N + L + +E S
Sbjct: 536 YKPPFRVLPYKIKST---LRDKEMTTLRRLSRQTAPHFALGRNREHQGLAAAMVKLWEKS 592
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
++ K+ K G+ + ++ ++K+L VLLS + E I+ +RG D+
Sbjct: 593 AIAKIAIKRGVPNTCNDRMAEEIKKLTGGVLLSRNKEYIVFYRGNDF 639
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+K++C+ V ++M LE KTGG +I
Sbjct: 143 IRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVI 202
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 203 WRSGSTIILYRGTNYTY 219
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+K++C+ V ++M LE KTGG +I
Sbjct: 59 IRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVI 118
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 119 WRSGSTIILYRGTNYTY 135
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 538 MLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAE 597
Query: 61 TGGKII----FRVGGLVYLFRGRNY 81
+GG ++ G + ++RG+NY
Sbjct: 598 SGGILVAVEKVSKGHAIIVYRGKNY 622
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+K++C+ V ++M LE KTGG +I
Sbjct: 149 IRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVI 208
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 209 WRSGSTIILYRGTNYTY 225
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 628 MLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAE 687
Query: 61 TGGKII----FRVGGLVYLFRGRNY 81
+GG ++ G + ++RG+NY
Sbjct: 688 SGGILVAVEKVSKGHAIIVYRGKNY 712
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
L+ ++ +G G+T +++ IHS W V+K++ +G P+++M LE++TGG +I
Sbjct: 368 LRMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSLNMKRTHEILEDRTGGTVI 427
Query: 67 FRVGGLVYLFRGRNYNYRTRPQY 89
+R G + L+RG NYN R Y
Sbjct: 428 WRSGRSIVLYRGMNYNLRCVQSY 450
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + ++ +H HWK R ++KI KG + ++ LE ++GG +I G
Sbjct: 787 LGRREVFAGTVQNMHLHWKHRELVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTTKG 846
Query: 71 GLVYLFRGRNYNYRTRPQ 88
+ ++RG+NY RPQ
Sbjct: 847 YSIIVYRGKNYK---RPQ 861
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 99 PVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKV 158
P + +L L E LRR + P L +N + L + +E S++VK+
Sbjct: 540 PPFRQLPYRTKLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKI 599
Query: 159 NCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
K G+ + ++ ++K+L VL+S + E I+ +RG D+
Sbjct: 600 AIKRGVPNTCNDRMAEEIKKLTGGVLISRNKEYIIFYRGNDF 641
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+K++C+ V ++M LE KTGG +I
Sbjct: 158 IRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVI 217
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 218 WRSGSTIILYRGTNYKY 234
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 640 MLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAE 699
Query: 61 TGGKII----FRVGGLVYLFRGRNYN 82
+GG ++ G + ++RG+NY
Sbjct: 700 SGGILVAVEKVSKGHAIIVYRGKNYQ 725
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
+ + R++ +G+ G+T ++ IH W+R V+KI C+ + ++M LE KTGG ++
Sbjct: 171 IAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVV 230
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 231 WRAGSKIVLYRGVNYIY 247
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + +GR G+ +E +H HWK R ++KI CK + V + LE +
Sbjct: 586 MLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAE 645
Query: 61 TGGKIIF--RV--GGLVYLFRGRNYNYRTRPQYPLMLWKPA 97
+GG ++ RV G + ++RG+NY Q P +L P
Sbjct: 646 SGGILVAVERVSKGYAIVVYRGKNY------QRPALLRPPT 680
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 98 APVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
P Y K + P G LT E L+R G+ L L +N L + +E
Sbjct: 358 VPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKLWEKC 417
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ K+ K G+ ++ + + +LK L LLS D E I+++RGKD+
Sbjct: 418 EIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDF 464
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+ ++KI+C V ++M LE KTGG +I+R G
Sbjct: 157 KRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKTGGLVIWRSG 216
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 217 STIILYRGTNYKY 229
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LGR G+ +E +H HWK R ++KI CK D++ R LE ++GG ++ RV G
Sbjct: 657 LGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKG 716
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPI 130
+ ++RG+NY+ RP + + PK + + L + + E +R+ L +
Sbjct: 717 HAIIMYRGKNYH---RP----------STLRPKSLLNKRDALKR--SVEYQRQKSLKLHV 761
Query: 131 CKLAKNGVYL 140
L+KN YL
Sbjct: 762 LNLSKNIDYL 771
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T +L+ IH WK V+K+K +G TV+M +LE +TGG +I+R G
Sbjct: 239 RIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGS 298
Query: 72 LVYLFRGRNYN 82
L+ L+RG Y+
Sbjct: 299 LIVLYRGMTYH 309
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI +G + +V LE ++ G +I G
Sbjct: 659 LGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKG 718
Query: 71 GLVYLFRGRNYNYRTRP 87
V ++RG+NY TRP
Sbjct: 719 YEVIVYRGKNY---TRP 732
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+ ++KI+C + ++M LE KTGG +I+R G
Sbjct: 159 KRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKTGGLVIWRSG 218
Query: 71 GLVYLFRGRNYNY 83
+ L+RG NY Y
Sbjct: 219 STIILYRGTNYKY 231
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LGR G+ +E +H HWK R ++KI CK D+ R LE ++GG ++ RV G
Sbjct: 671 LGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVSKG 730
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPI 130
+ ++RG+NY RP + + PK + + L + + EL+R+ L +
Sbjct: 731 HAIIMYRGKNYQ---RP----------SSLRPKSLLNKKDALKR--SVELQRRKSLKLHV 775
Query: 131 CKLAKNGVYL 140
L+KN YL
Sbjct: 776 LNLSKNIDYL 785
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T +L+ IH WK V+K+K +G TV+M +LE +TGG +I+R G
Sbjct: 296 RIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGS 355
Query: 72 LVYLFRGRNYN 82
L+ L+RG Y+
Sbjct: 356 LIVLYRGMTYH 366
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI +G + +V LE ++ G +I G
Sbjct: 716 LGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKG 775
Query: 71 GLVYLFRGRNYNYRTRP 87
V ++RG+NY TRP
Sbjct: 776 YEVIVYRGKNY---TRP 789
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+KI C+ + ++M LE KTGG +I
Sbjct: 179 IRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVI 238
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 239 WRSGSKILLYRGVNYQY 255
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI C V LE +
Sbjct: 586 MLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAE 645
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRTRPQ 88
+GG ++ G + ++RG+NY RPQ
Sbjct: 646 SGGILVAVEMVSKGYAIIVYRGKNYE---RPQ 674
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
+ +G G+T +++ IH W++ V+KI+C G ++M LE KTGG +++R GG+
Sbjct: 99 IKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINMKQTHDELETKTGGLVVWRTGGM 158
Query: 73 VYLFRGRNYNYRT 85
L+RG+ Y R
Sbjct: 159 AILYRGKGYFARV 171
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV----G 70
+GR G+ ++E +H HWK R ++K+ K V + LE ++GG ++ V G
Sbjct: 508 IGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVVTTSKG 567
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQ 106
+ ++RG+NY + +L K A K IQ
Sbjct: 568 QAIIVYRGKNYQRPAELRPRSLLTKRKALARSKEIQ 603
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP + P A + L+ E LRR K L P L +N L + ++ S
Sbjct: 263 YKPPLRMLP---YRAKKNLSNMELTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKS 319
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
LVK+ K G+ + + + +L+ L VLLS D I ++RGKD+
Sbjct: 320 ELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRDKFFITLYRGKDF 366
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +++ +G+ G+T ++ IH W+ V+KI C+ + ++M LE KTGG +I
Sbjct: 179 IRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVI 238
Query: 67 FRVGGLVYLFRGRNYNY 83
+R G + L+RG NY Y
Sbjct: 239 WRSGSKILLYRGVNYQY 255
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI C V LE +
Sbjct: 595 MLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAE 654
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRTRPQ 88
+GG ++ G + ++RG+NY RPQ
Sbjct: 655 SGGILVAVEMVSKGYAIIVYRGKNYE---RPQ 683
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
++V L + G+T ++++IH WKR V+++ C+ + DM LE KTGG +++R G
Sbjct: 166 KKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVVWRSG 225
Query: 71 GLVYLFRGRNYNY 83
+ L+RG +Y Y
Sbjct: 226 TKIILYRGADYKY 238
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+++KP L LGR G+ +E +H HWK R ++KI C G ++ + LE +
Sbjct: 576 LMMKPFLL------LGRRGVFDGTVENMHLHWKYRELVKIICNG-SLEEVHQIALTLEAE 628
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRT--RPQYPL 91
+GG ++ R G + ++RG+NY+ RPQ L
Sbjct: 629 SGGILVAVERVRKGFAIIVYRGKNYSVPVCLRPQTLL 665
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
LT E L+R GK L L +N L + +E +VK+ K G+ + K
Sbjct: 369 LTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKI 428
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ +LK L +LLS D E + +RGKD+
Sbjct: 429 MAKELKHLTGGILLSRDREFFVFYRGKDY 457
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G+ G+T ++ IH W+ ++KI+C V ++M LE KTGG +I+R G
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 72 LVYLFRGRNYNY 83
+ L+RG +Y Y
Sbjct: 219 TIILYRGTDYKY 230
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 587 MLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAE 646
Query: 61 TGGKIIF--RV--GGLVYLFRGRNY 81
+GG ++ RV + ++RG+NY
Sbjct: 647 SGGILVAVERVSKAHAIIIYRGKNY 671
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 118 DELRR---KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 174
DELRR G L K+ K GV +V + + + LVK+ C + A + K+
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 175 LKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLD---------------IAG 219
L+ +++ I+++RG D+K Y N +D IA
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 220 DADGSGTPSDDPSQ 233
+ GS SD+P++
Sbjct: 264 EQSGSEEDSDNPAE 277
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G+ G+T ++ IH W+ ++KI+C V ++M LE KTGG +I+R G
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 72 LVYLFRGRNYNY 83
+ L+RG +Y Y
Sbjct: 219 TIILYRGTDYKY 230
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 623 MLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAE 682
Query: 61 TGGKIIF--RV--GGLVYLFRGRNY 81
+GG ++ RV + ++RG+NY
Sbjct: 683 SGGILVAVERVSKAHAIIIYRGKNY 707
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 118 DELRR---KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 174
DELRR G L K+ K GV +V + + + LVK+ C + A + K+
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 175 LKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLD---------------IAG 219
L+ +++ I+++RG D+K Y + N +D IA
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFQDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 220 DADGSGTPSDDPSQ 233
+ GS SD+P++
Sbjct: 264 EQSGSEEDSDNPAE 277
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G+ G+T ++ IH W+ ++KI+C V ++M LE KTGG +I+R G
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 72 LVYLFRGRNYNY 83
+ L+RG +Y Y
Sbjct: 219 TIILYRGTDYKY 230
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 587 MLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAE 646
Query: 61 TGGKIIF--RV--GGLVYLFRGRNY 81
+GG ++ RV + ++RG+NY
Sbjct: 647 SGGILVAVERVSKAHAIIIYRGKNY 671
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 118 DELRR---KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 174
DELRR G L K+ K GV +V + + + LVK+ C + A + K+
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 175 LKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLD---------------IAG 219
L+ +++ I+++RG D+K Y N +D IA
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 220 DADGSGTPSDDPSQ 233
+ GS SD+P++
Sbjct: 264 EQSGSEEDSDNPAE 277
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
+ ++ +G G+T ++++IH WK ++++K G P ++M + LE KTGG +I
Sbjct: 250 FQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEILERKTGGLVI 309
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWK 95
+R G + L+RG +Y PQ+ ++K
Sbjct: 310 WRSGTSLSLYRGVSYELPEAPQFNKRIYK 338
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + +E +H HWK R ++KI K + N+ +LE ++GG ++ G
Sbjct: 678 LGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVSKG 737
Query: 71 GLVYLFRGRNY 81
+ ++RG++Y
Sbjct: 738 YAIIVYRGKDY 748
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ + +G G+T ++++I WK ++K+KC+G ++M + LE KTGG +I
Sbjct: 233 MRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVI 292
Query: 67 FRVGGLVYLFRGRNY 81
+R G V L+RG +Y
Sbjct: 293 WRSGTSVSLYRGVSY 307
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K + LE ++GG ++ G
Sbjct: 666 LGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKG 725
Query: 71 GLVYLFRGRNY 81
+ +FRG++Y
Sbjct: 726 FAIVVFRGKDY 736
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ + +G G+T ++++I WK ++K+KC+G ++M + LE KTGG +I
Sbjct: 233 MRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVI 292
Query: 67 FRVGGLVYLFRGRNY 81
+R G V L+RG +Y
Sbjct: 293 WRSGTSVSLYRGVSY 307
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K + LE ++GG ++ G
Sbjct: 666 LGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKG 725
Query: 71 GLVYLFRGRNYN 82
+ +FRG++Y
Sbjct: 726 FAIVVFRGKDYQ 737
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
L+K + + +GR G+T +++ IH WK ++++K +G ++M + LE KT
Sbjct: 219 LLKLTFEKKHKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKT 278
Query: 62 GGKIIFRVGGLVYLFRGRNY 81
GG +I+R G V L+RG +Y
Sbjct: 279 GGLVIWRSGNSVSLYRGVSY 298
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K + + LE ++GG ++ G
Sbjct: 651 LGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKG 710
Query: 71 GLVYLFRGRNYN 82
V ++RG++Y
Sbjct: 711 YSVIVYRGKDYQ 722
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 47/76 (61%)
Query: 6 LLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI 65
++ ++ + + G+T N+++ IH W+ ++K+KC ++M V LE++TGG +
Sbjct: 46 IIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLV 105
Query: 66 IFRVGGLVYLFRGRNY 81
I+R G + ++RG++Y
Sbjct: 106 IWRAGAALVIYRGKDY 121
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 16 GRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVGG 71
GR G+ ++E +H HWK R ++K+ KG +D+++ + +E ++GG +I G
Sbjct: 458 GRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQ 517
Query: 72 LVYLFRGRNYN 82
+ +RG+NY
Sbjct: 518 VFLYYRGKNYR 528
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
L+ E L R + + P +++N L + + +E + + KV K + ++D K
Sbjct: 228 LSDREFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 287
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ +LK L CVLL + ++ +RGKD+
Sbjct: 288 MADELKRLTGCVLLGREKTHMIFYRGKDF 316
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+ +G G+T +++ IH WK + ++K +G P ++M + LE KTGG +I+R G
Sbjct: 230 KTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWRSGA 289
Query: 72 LVYLFRGRNY 81
V L+RG +Y
Sbjct: 290 TVSLYRGVSY 299
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K + + LE ++GG ++ G
Sbjct: 655 LGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKG 714
Query: 71 GLVYLFRGRNYNYRTRPQYPLML 93
+ ++RG++Y Q P ML
Sbjct: 715 YAIIVYRGKDY------QRPSML 731
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 102 PKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK 161
P Q PE +T E R+ G + L + GV+ V ++ ++ LVK+ K
Sbjct: 624 PSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILK 683
Query: 162 GMHASDYKKLGAKLKELVPCVLLSFDD----EQILMWRGKDWKSMYPEPPSFSNPVDL 215
KK+ L+ VL+S D I+++RGKD++ PS P +L
Sbjct: 684 AKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQR-----PSMLRPKNL 736
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 47/76 (61%)
Query: 6 LLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI 65
++ ++ + + G+T N+++ IH W+ ++K+KC ++M V LE++TGG +
Sbjct: 45 IIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLV 104
Query: 66 IFRVGGLVYLFRGRNY 81
I+R G + ++RG++Y
Sbjct: 105 IWRAGTALVIYRGKDY 120
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ ++E +H HWK R ++K+ KG +D+++ + +E ++GG +I G
Sbjct: 459 LGRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKG 518
Query: 71 GLVYLFRGRNYN 82
+ +RG+NY
Sbjct: 519 QVFLYYRGKNYR 530
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
L+ E L R + + P +++N L + + +E + + KV K + ++D K
Sbjct: 227 LSDKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 286
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ +LK L CVLL + ++ +RGKD+
Sbjct: 287 MADELKRLTGCVLLGREKTHMIFYRGKDF 315
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ G+T ++ IH W+R V+++ C+ + ++M LE KTGG +++R G
Sbjct: 168 QKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRTHDILERKTGGLVVWRSG 227
Query: 71 GLVYLFRGRNYNY 83
+ L+RG +Y Y
Sbjct: 228 SKIILYRGIDYKY 240
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LGR G+ +E +H HWK R ++KI C R LE ++GG ++ RV G
Sbjct: 578 LGRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQTARTLEAESGGILVAVERVNKG 637
Query: 71 GLVYLFRGRNYN 82
+ ++RG+NY+
Sbjct: 638 YAIIVYRGKNYS 649
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++ +G+ GLT ++ IH W+ V++I C+ + +M LE KTGG +++R G
Sbjct: 147 QKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVVWRSG 206
Query: 71 GLVYLFRGRNYNY 83
+ L+RG +Y Y
Sbjct: 207 SKIILYRGTDYKY 219
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKC-KGVPTVDMDNVCRRLEE 59
ML + LK + + LGR G+ +E +H HWK R ++KI C K + D+ + + LE
Sbjct: 550 MLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEA 609
Query: 60 KTGGKIIF--RVGG--LVYLFRGRNYN 82
++GG +I RV + ++RG+NY+
Sbjct: 610 ESGGILIAVERVNKSYAIIVYRGKNYS 636
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 110 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNC-KGMHASDY 168
EG+T+ E LRR G + P L + GV+ V ++ ++ LVK+ C K M D
Sbjct: 541 EGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDV 600
Query: 169 KKLGAKLKELVPCVLLSFD----DEQILMWRGKDW 199
+++ L+ +L++ + I+++RGK++
Sbjct: 601 QQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNY 635
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKC-----KGVPTVDMDNVCRRLEEKTGGKIIF 67
V LG GL ++L + S W+ ++K++ K +P + VC LE++TGG +++
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKLRIVSRANKYMPYIT--QVCAALEQRTGGLVVW 196
Query: 68 RVGGLVYLFRGRNYNYRT---RPQYPLM-------LWKPAAPV 100
R GG ++LFRG Y+ + RP P +W PA P
Sbjct: 197 RAGGSIWLFRGAGYDAASPSGRPGLPHTRARVTPRVWPPARPT 239
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T ++++ IH W++ V+K+K +G + +M LE +TGG +I+R G
Sbjct: 282 RIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGS 341
Query: 72 LVYLFRGRNYNYRTRPQY 89
V L+RG Y Y
Sbjct: 342 SVVLYRGMAYKLHCVQSY 359
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LG G+ +E +H HWK R ++KI KG + ++ LE ++GG ++ G
Sbjct: 701 LGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKG 760
Query: 71 GLVYLFRGRNYN 82
+ ++RG+NY
Sbjct: 761 YAIIVYRGKNYQ 772
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T ++++ IH W++ V+K+K +G + +M LE +TGG +I+R G
Sbjct: 285 RIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGS 344
Query: 72 LVYLFRGRNYNYRTRPQY 89
V L+RG Y Y
Sbjct: 345 SVVLYRGMAYKLHCVQSY 362
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LG G+ +E +H HWK R ++KI KG + ++ LE ++GG ++ G
Sbjct: 704 LGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKG 763
Query: 71 GLVYLFRGRNYN 82
+ ++RG+NY
Sbjct: 764 YAIIVYRGKNYQ 775
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+V + G+T +++ IH WK ++++K +G P ++M + LE KTGG +I+R G
Sbjct: 123 KVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRSGT 182
Query: 72 LVYLFRGRNY 81
V L+RG +Y
Sbjct: 183 SVSLYRGVSY 192
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LGR G+ +E +H HWK R ++KI K + + LE ++GG ++ RV G
Sbjct: 547 LGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVDRVSKG 606
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +FRG++Y ++ + +L K A IQ + E L KH
Sbjct: 607 YAIIVFRGKDYQRPSKLRPGNLLTKRKALARSIEIQRS-EALLKH 650
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
L + EA LRR + L P L ++ L + +E SS+ K++ K G+ + ++
Sbjct: 313 LGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLWEKSSIAKISLKRGVQLTTSER 372
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
+ +K+L +LLS + + ++ +RGKD+ S
Sbjct: 373 MAEDIKKLTGGMLLSRNKDFLVFYRGKDFLS 403
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+ +G G+T ++E I WK V+++K G P ++M LE KTGG +I+R G
Sbjct: 192 RTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGT 251
Query: 72 LVYLFRGRNYN 82
V L+RG +Y+
Sbjct: 252 SVSLYRGVDYD 262
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K D+ + LE ++GG ++ G
Sbjct: 610 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 669
Query: 71 GLVYLFRGRNY 81
+ +FRG+NY
Sbjct: 670 YAIVVFRGKNY 680
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 363 YKPPFRVLPYGVRPS---LSRMDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 419
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ KV K G+ + +++ +K+L V+LS ++E I+ +RGKD+ S
Sbjct: 420 SIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 468
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+ +G G+T ++E I WK V+++K G P ++M LE KTGG +I+R G
Sbjct: 187 RTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGT 246
Query: 72 LVYLFRGRNYN 82
V L+RG +Y+
Sbjct: 247 SVSLYRGVDYD 257
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K D+ + LE ++GG ++ G
Sbjct: 605 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 664
Query: 71 GLVYLFRGRNY 81
+ +FRG+NY
Sbjct: 665 YAIVVFRGKNY 675
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 358 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 414
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ K+ K G+ + +++ +K+L V+LS ++E I+ +RGKD+ S
Sbjct: 415 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 463
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++++ + G+T+ +LE IH W++ ++++K V DM +E +TGG +I+R G
Sbjct: 219 RISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRAGS 278
Query: 72 LVYLFRGRNYN 82
++ +FRG NY
Sbjct: 279 VMVVFRGTNYQ 289
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
LG G+ ++E +H HWK R ++K+ K +++ + LE ++GG + I RV G
Sbjct: 632 LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKG 691
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 692 FALIYYRGKNYR-RPISIRPRNLLTKAKALKRSVAMQRHEALSQH 735
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T ++E I W+ V++IK G P ++M LE KTGG +I+R G
Sbjct: 194 RIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKTGGLVIWRSGT 253
Query: 72 LVYLFRGRNYN 82
V L+RG Y+
Sbjct: 254 SVSLYRGVAYD 264
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K D+ + LE ++GG ++ G
Sbjct: 613 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKG 672
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGK 125
+ +FRG++Y ++ + +L K A IQ E L+ H A RR K
Sbjct: 673 YAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRR-EALSHHIATLNRRVKK 726
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 365 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKS 421
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ K+ K G+ + +++ +K+L V+LS +++ ++ +RGKD+ S
Sbjct: 422 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLS 470
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 50/238 (21%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ + + GLT +L+ IH HW ++++K +M + +E +T G +I+R G
Sbjct: 162 KITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMKLAHQIVEHRTRGLVIWRSGS 221
Query: 72 LVYLFRGRNY------NYRTRPQYPLMLWK------------------------------ 95
++++RG+NY + + + + WK
Sbjct: 222 YMWVYRGKNYQGPVESDATSMEKSEAVWWKGENMTPEEAEFNRMLDGFGPRFVEWWGTGI 281
Query: 96 ---------PAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTL 142
P P Y ++ P G LT E +R+ KSL L +N L
Sbjct: 282 LPVDADSLPPMVPGYKTPLRLLPAGMRPQLTNDELTNMRKLAKSLPCHFALGRNRNLQGL 341
Query: 143 VRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ +E S + K+ K G+ ++ + + +LK L LL + I+++RGKD+
Sbjct: 342 ASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKALTGGTLLLRNKYYIVIYRGKDF 399
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF-----RV 69
LG G+ ++E +H HWK R ++K+ K +++ R LE ++GG ++ +
Sbjct: 543 LGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKG 602
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
L+Y +RG+NY R P L A + ++ + E L++H
Sbjct: 603 FSLIY-YRGKNYR-RPMTLRPRNLLTKAKALQRSVVMQRHEALSQH 646
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T ++++ IH WK V+K+K + + +M LE +TGG II+R G
Sbjct: 382 RIKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRTGGLIIWRSGS 441
Query: 72 LVYLFRGRNYNYRTRPQY 89
V ++RG Y ++ Y
Sbjct: 442 SVVMYRGTTYKFQCVQSY 459
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI + + ++ LE ++GG ++ G
Sbjct: 801 LGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKG 860
Query: 71 GLVYLFRGRNYNYRTRPQ 88
+ ++RG+NY RPQ
Sbjct: 861 YAIIVYRGKNY---MRPQ 875
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+ +G G+T ++E I WK V+++K G P ++M LE KTGG +I+R G
Sbjct: 868 RTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGT 927
Query: 72 LVYLFRGRNYN 82
V L+RG +Y+
Sbjct: 928 SVSLYRGVDYD 938
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K D+ + LE ++GG ++ G
Sbjct: 1286 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 1345
Query: 71 GLVYLFRGRNY 81
+ +FRG+NY
Sbjct: 1346 YAIVVFRGKNY 1356
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 1039 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 1095
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ K+ K G+ + +++ +K+L V+LS ++E I+ +RGKD+ S
Sbjct: 1096 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 1144
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T ++E I W+ V++IK G P ++M LE KTGG +I+R G
Sbjct: 40 RIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKTGGLVIWRSGT 99
Query: 72 LVYLFRGRNYN 82
V L+RG Y+
Sbjct: 100 SVSLYRGVAYD 110
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K D+ + LE ++GG ++ G
Sbjct: 459 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKG 518
Query: 71 GLVYLFRGRNY 81
+ +FRG++Y
Sbjct: 519 YAIVVFRGKDY 529
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 211 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKS 267
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ K+ K G+ + +++ +K+L V+LS +++ ++ +RGKD+ S
Sbjct: 268 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLS 316
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
L+K + +G G+T ++ IH WK ++++K +G ++M + LE+KT
Sbjct: 219 LLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKT 278
Query: 62 GGKIIFRVGGLVYLFRGRNY 81
GG +I+R G V L+RG +Y
Sbjct: 279 GGLVIWRSGNSVSLYRGVSY 298
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K + + LE ++GG ++ G
Sbjct: 651 LGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKG 710
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEA 117
+ ++RG++Y Q P ML K + + E L +HEA
Sbjct: 711 YSILVYRGKDY------QRPSMLRPKNLLTKRKALARSIE-LQRHEA 750
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 93 LWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 152
L K + P + PE +T E R+ G + L + GV+ + ++ ++
Sbjct: 611 LMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKY 670
Query: 153 SSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDD----EQILMWRGKDWKSMYPEPPS 208
LVK+ K + KK+ L+ VL+S D IL++RGKD++ PS
Sbjct: 671 RELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQR-----PS 725
Query: 209 FSNPVDL 215
P +L
Sbjct: 726 MLRPKNL 732
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +GR G+T ++E IH W+ + K+KC +++M LE TGG +I+R G
Sbjct: 343 RLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRAGS 402
Query: 72 LVYLFRGRNY 81
++RG++Y
Sbjct: 403 AAVVYRGKDY 412
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV----G 70
LGR G+ +E +H HWK R ++KI K P + + LE ++GG ++ V G
Sbjct: 774 LGRRGVFGGTVENMHLHWKHRELVKILVK-APIAEAQQTAKMLERESGGILVDIVNTSKG 832
Query: 71 GLVYLFRGRNYNYRT--RPQYPL 91
+ ++RG+NY + RP++ L
Sbjct: 833 QAIIVYRGKNYQRPSELRPRHLL 855
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+V +G G+T ++E IH W+ V+K+K +++M LE+KTGG +I+R G
Sbjct: 262 RVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGS 321
Query: 72 LVYLFRGRNYNYR 84
V L+RG +Y +
Sbjct: 322 SVVLYRGISYKLK 334
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + +E +H HWK R ++K+ +G + ++ LE ++GG ++ G
Sbjct: 668 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 727
Query: 71 GLVYLFRGRNYN--YRTRP 87
+ L+RG+NY +R RP
Sbjct: 728 YAIILYRGKNYQMPFRLRP 746
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++N+ + G+T +L IH W++ ++++K DM +E +TGG + +R G
Sbjct: 232 RINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGS 291
Query: 72 LVYLFRGRNYNYRTRPQ 88
++ +FRG NY +PQ
Sbjct: 292 VMVVFRGTNYEGPPKPQ 308
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
LG G+ ++E +H HWK R ++K+ K +++ R LE ++GG + I RV G
Sbjct: 645 LGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKG 704
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 705 YALIYYRGKNYR-RPVSLRPRNLLTKAKALKRSVAMQRHEALSQH 748
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 99 PVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSS 154
P Y ++ P G LT E LR+ KSL L +N + L + +E S
Sbjct: 395 PGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSI 454
Query: 155 LVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+VK+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 455 VVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDF 500
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +G G+T ++ I WK V+++K G P ++M LE KTGG +I+R G
Sbjct: 188 RIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGT 247
Query: 72 LVYLFRGRNYN 82
V L+RG Y+
Sbjct: 248 SVSLYRGVAYD 258
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR G+ L P L ++ L + +E S
Sbjct: 359 YKPPFRVLPYGVRRS---LSRKDTTNLRRLGRGLPPHFALGRSRQLQGLAAAMVKLWERS 415
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ K+ K G+ + +++ LK+L V+LS +++ ++ +RGKD+ S
Sbjct: 416 SIAKIALKRGVQLTTSERMAEDLKKLTGGVMLSRNNDFVVFYRGKDFLS 464
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K ++ + LE ++GG ++ G
Sbjct: 607 LGRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVSKG 666
Query: 71 GLVYLFRGRNY 81
+ +FRG++Y
Sbjct: 667 YAIVVFRGKDY 677
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++N+ + G+T +L IH W++ ++++K DM +E +TGG + +R G
Sbjct: 232 RINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGS 291
Query: 72 LVYLFRGRNYNYRTRPQ 88
++ +FRG NY +PQ
Sbjct: 292 VMVVFRGTNYEGPPKPQ 308
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
LG G+ ++E +H HWK R ++K+ K +++ R LE ++GG + I RV G
Sbjct: 645 LGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKG 704
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 705 YALIYYRGKNYR-RPVSLRPRNLLTKAKALKRSVAMQRHEALSQH 748
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 97 AAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 152
+ P Y ++ P G LT E LR+ KSL L +N + L + +E
Sbjct: 393 SIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEK 452
Query: 153 SSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
S +VK+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 453 SIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDF 500
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+VN+ + GLT ++E IH W++ ++++K V DM E +TGG +I+R G
Sbjct: 228 RVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKTAHEITERRTGGLVIWRAGS 287
Query: 72 LVYLFRGRNY 81
++ ++RG +Y
Sbjct: 288 VMVVYRGSSY 297
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
LG G+ ++E +H HWK R ++K+ K ++ R LE ++GG + I RV G
Sbjct: 641 LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVAIERVPKG 700
Query: 71 GLVYLFRGRNY 81
+ +RG+NY
Sbjct: 701 FALIYYRGKNY 711
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ +GR G+T ++E IH W+ + K+KC +++M LE TGG +I+R G
Sbjct: 51 RLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGS 110
Query: 72 LVYLFRGRNYNY 83
++RG++Y +
Sbjct: 111 AAVVYRGKDYVH 122
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCK-GVPTVDMDNVCRRLEEKTGGKIIFRV---- 69
LGR G+ +E +H HWK R ++KI K +P + + + + LE ++GG ++ +
Sbjct: 463 LGRRGVFSGTVENMHLHWKYRELVKILVKTSLP--EAERIAKILENESGGILVDIITTSK 520
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
G + ++RG+NY R P L + L + E L KH
Sbjct: 521 GQAIVMYRGKNYQ-RPSELRPRHLLTKRQALKRSLEMQRMESLEKH 565
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKN----GVYLTLVRDVRNAFEGSSLVKVNCK-GMHAS 166
L E ELR + + P L KN GV +V+ +E S +VK+ K G+ +
Sbjct: 227 LNNFELTELRHLARPIPPHIVLGKNRGLDGVAAAIVK----LWERSEIVKIGVKRGVQNT 282
Query: 167 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+++ +LK L LLS D E I+ RGKD+
Sbjct: 283 SNERMAEELKRLTGGTLLSRDKEFIVFHRGKDF 315
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++N+ + GLT ++E I+ W++ ++++K V DM +E +TGG +I+R G
Sbjct: 261 RINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGS 320
Query: 72 LVYLFRGRNY 81
++ ++RG +Y
Sbjct: 321 VMVVYRGLDY 330
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 93 LWKPAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 148
L P P Y + P G LT E LR+ GK+L L +N + L +
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478
Query: 149 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+E S + K+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 479 IWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDF 530
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
M K LK + +G G+ ++E +H HWK R ++K+ K ++ R LE +
Sbjct: 660 MFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYE 719
Query: 61 TGGKIIF-----RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+GG ++ + L+Y +RG+NY R P L A + + + E L++H
Sbjct: 720 SGGVLVAIEKVPKGFALIY-YRGKNYR-RPISLRPRNLLTKAKALKRSIAMQRHEALSQH 777
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++N+ + GLT ++E I+ W++ ++++K V DM +E +TGG +I+R G
Sbjct: 261 RINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGS 320
Query: 72 LVYLFRGRNY 81
++ ++RG +Y
Sbjct: 321 VMVVYRGLDY 330
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
M K LK + LG G+ ++E +H HWK R ++K+ K +++ R LE +
Sbjct: 660 MFRKVGLKMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYE 719
Query: 61 TGGKIIF-----RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+GG ++ + L+Y +RG+NY R P L A + + + E L++H
Sbjct: 720 SGGVLVAIEKVPKGFALIY-YRGKNYR-RPISLRPRNLLTKAKALKRSIAMQRHEALSQH 777
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 93 LWKPAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 148
L P P Y + P G LT E LR+ GK+L L +N + L +
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478
Query: 149 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+E S + K+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 479 IWEKSLIAKIAVKRGIQNTNNKLMADEVKALTGGVLLLRNKYYIVIYRGKDF 530
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + V+K+ K + LE +TGG +I
Sbjct: 579 LKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLI 638
Query: 67 ----FRVGGLVYLFRGRNYNYRTR 86
F + L+RG+NY T+
Sbjct: 639 AIERFTTSHAIILYRGKNYRRPTK 662
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + V+K+ K + LE +TGG +I
Sbjct: 579 LKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLI 638
Query: 67 ----FRVGGLVYLFRGRNYNYRTR 86
F + L+RG+NY T+
Sbjct: 639 AIERFTTSHAIILYRGKNYRRPTK 662
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+ +G G+T ++ I W+ V+++K G P ++M LE KTGG +I+R G
Sbjct: 203 KTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPALNMRLFHEILERKTGGLVIWRSGT 262
Query: 72 LVYLFRGRNYN 82
V L+RG Y+
Sbjct: 263 SVSLYRGVAYD 273
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K D+ LE ++GG ++ G
Sbjct: 622 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKG 681
Query: 71 GLVYLFRGRNY 81
+ +FRG++Y
Sbjct: 682 YAIVVFRGKDY 692
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 94 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 153
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 374 YKPPFRVLPYGVRRS---LSRKDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWERS 430
Query: 154 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S+ KV K G+ + +++ +K+L V+LS +++ ++ +RGKD+ S
Sbjct: 431 SIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFVVFYRGKDFLS 479
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ + + G+T + E IH W++ ++++K DM +E +TGG II+R G
Sbjct: 198 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMKTAHELVERRTGGLIIWRAGS 257
Query: 72 LVYLFRGRNYNYRTRPQ 88
++ ++RG NY T+ Q
Sbjct: 258 VMVVYRGNNYTRPTKSQ 274
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
+G G+ ++E +H HWK R V+K+ K ++ R LE ++GG ++ RV G
Sbjct: 614 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVNETARLLEYESGGILVAVERVPKG 673
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEA 117
+ +RG+NY R P L A + + + E L++H A
Sbjct: 674 YALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQHIA 719
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1
[Medicago truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1
[Medicago truncatula]
Length = 387
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVY 74
+G G+TH +++ IH W V+K K + +M + LE KTGG +++R+G +
Sbjct: 11 VGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGSSIV 70
Query: 75 LFRGRNY 81
L+RG +Y
Sbjct: 71 LYRGMSY 77
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + V+K+ K + LE +TGG +I
Sbjct: 368 LKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTLI 427
Query: 67 ----FRVGGLVYLFRGRNYNYRTR 86
F + L+RG+NY T+
Sbjct: 428 AIERFTTSHAIILYRGKNYRRPTK 451
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 46/77 (59%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
+V++ + GLT ++E IH W+++ ++++K +M + +E +TGG + +R G
Sbjct: 231 RVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRIAHQIVERRTGGLVTWRAGS 290
Query: 72 LVYLFRGRNYNYRTRPQ 88
++ ++RG+NY P+
Sbjct: 291 VMIVYRGKNYQGPASPE 307
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF----- 67
+ LG G+ ++E +H HWK R ++K+ K +++ R LE ++GG ++
Sbjct: 640 LQLGIRGVFDGVIENMHLHWKHRELVKLVTKQKNRAFVEDTARLLEYESGGILVAIEKVS 699
Query: 68 RVGGLVYLFRGRNY 81
+ ++Y +RG+NY
Sbjct: 700 KEFAIIY-YRGKNY 712
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LKD ++ + + G+T + E IH W++ ++++K DM +E +TGG II
Sbjct: 192 LKD--RITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVERRTGGLII 249
Query: 67 FRVGGLVYLFRGRNYNYRTRP 87
+R G ++ ++RG NY TRP
Sbjct: 250 WRAGSVMVVYRGSNY---TRP 267
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
+G G+ ++E +H HWK R V+K+ K ++ R LE ++GG + I RV G
Sbjct: 611 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVEETARLLEYESGGILVAIERVPKG 670
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 671 HALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQH 714
>gi|357488365|ref|XP_003614470.1| CRS2-associated factor [Medicago truncatula]
gi|355515805|gb|AES97428.1| CRS2-associated factor [Medicago truncatula]
Length = 248
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 134 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLK 176
KNGVY+ LV+D +AF S VK++CKG+ DYKKLG+K K
Sbjct: 119 VKNGVYIMLVKDAGDAFGRSRFVKIDCKGLDPGDYKKLGSKHK 161
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 393 MLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAE 452
Query: 61 TGGKIIF--RV--GGLVYLFRGRNY 81
+GG ++ RV + ++RG+NY
Sbjct: 453 SGGILVAVERVSKAHAIIIYRGKNY 477
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML K LK + LGR G+ +E +H HWK R ++KI CK D++ R LE +
Sbjct: 393 MLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAE 452
Query: 61 TGGKIIF--RV--GGLVYLFRGRNY 81
+GG ++ RV + ++RG+NY
Sbjct: 453 SGGILVAVERVSKAHAIIIYRGKNY 477
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K+ V +GR G+ ++ +H HWK+ ++I C P + + LE +GG +I
Sbjct: 239 KNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETLERLSGGIVID 298
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLML 93
G + ++RGRNY R + P++
Sbjct: 299 IHQGTTIIMWRGRNYK-RPKVDIPIIF 324
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T ++ I WK ++++K +G ++M + LE+KTGG +I+R G + L+RG
Sbjct: 244 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 303
Query: 79 RNY 81
+Y
Sbjct: 304 VSY 306
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
M K LK + LGR G+ +E +H HWK R ++KI K + V LE +
Sbjct: 640 MFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAE 699
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH- 115
+GG ++ G + ++RG++Y T + +L K A +Q EGL KH
Sbjct: 700 SGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRPKNLLTKRKALARSIELQRR-EGLLKHI 758
Query: 116 -----EADELR 121
+A++LR
Sbjct: 759 STMQAKAEQLR 769
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 97 AAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 152
A P Y + P G L EA LRR +S+ P L ++ L + +E
Sbjct: 399 AIPGYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEK 458
Query: 153 SSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 201
S L K+ K G+ ++ +++ LK+L +LLS + + ++ +RGK++ S
Sbjct: 459 SMLAKIAIKRGVQSTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLS 508
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + ++K+ K + LE +TGG +I
Sbjct: 592 LKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLI 651
Query: 67 ----FRVGGLVYLFRGRNYNYRTR 86
+ L+RG+NY+ T+
Sbjct: 652 ATQKLTNSHAIILYRGKNYHRPTK 675
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FR 68
V LGR G+ ++E IH HWK + V+K+ K T + LE +TGG +I
Sbjct: 583 VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLT 642
Query: 69 VGGLVYLFRGRNYNYRTRPQYPLMLWKPAA 98
+ L+RG+NY + + +L K A
Sbjct: 643 TSHAIILYRGKNYRRPAKSSFSNLLTKREA 672
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T ++ I WK ++++K +G ++M + LE+KTGG +I+R G + L+RG
Sbjct: 246 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 305
Query: 79 RNY 81
+Y
Sbjct: 306 VSY 308
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T ++ I WK ++++K +G ++M + LE+KTGG +I+R G + L+RG
Sbjct: 215 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 274
Query: 79 RNY 81
+Y
Sbjct: 275 VSY 277
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R ++KI K + V LE ++GG ++ G
Sbjct: 628 LGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKG 687
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ ++RG++Y T + +L K A +Q EGL KH
Sbjct: 688 YAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRR-EGLLKH 731
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T ++ I WK ++++K +G ++M + LE+KTGG +I+R G + L+RG
Sbjct: 246 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 305
Query: 79 RNY 81
+Y
Sbjct: 306 VSY 308
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
M K LK + LGR G+ +E +H HWK R ++KI K + V LE +
Sbjct: 645 MFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAE 704
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+GG ++ G + ++RG++Y T + +L K A +Q EGL KH
Sbjct: 705 SGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRR-EGLLKH 762
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + ++K+ K + LE +TGG +I
Sbjct: 592 LKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLI 651
Query: 67 ----FRVGGLVYLFRGRNYNYRTR 86
+ L+RG+NY+ T+
Sbjct: 652 ATQKLTNSHAIILYRGKNYHRPTK 675
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ + + G+T + E IH W++ ++++K DM +E +TGG II+R G
Sbjct: 206 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 265
Query: 72 LVYLFRGRNY 81
++ ++RG NY
Sbjct: 266 VMVVYRGSNY 275
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
+G G+ ++E +H HWK R V+K+ K ++ R LE ++GG + I RV G
Sbjct: 622 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVPKG 681
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEAD 118
+ +RG+NY R P L A + + + E L++H A+
Sbjct: 682 YALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQHIAE 728
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ + + G+T + E IH W++ ++++K DM +E +TGG II+R G
Sbjct: 203 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 262
Query: 72 LVYLFRGRNY 81
++ ++RG NY
Sbjct: 263 VMVVYRGSNY 272
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
+G G+ ++E +H HWK R V+K+ K ++ R LE ++GG + I RV G
Sbjct: 619 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKG 678
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEAD 118
+ +RG+NY R P L A + + + E L++H A+
Sbjct: 679 YALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQHIAE 725
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FR 68
V LGR G+ ++E IH HWK + V+K+ K T + LE +TGG +I
Sbjct: 583 VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLT 642
Query: 69 VGGLVYLFRGRNYNYRTRPQYPLMLWKPAA 98
+ L+RG+NY + + +L K A
Sbjct: 643 TSHAIILYRGKNYRRPAKSSFSNLLTKREA 672
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
L+ ++ +G G+ ++++ +H W+ V+K+K + + +M LE +TGG +I
Sbjct: 339 LRMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSFNMRRTHEILENRTGGLVI 398
Query: 67 FRVGGLVYLFRGRNY 81
+R G V L+RG +Y
Sbjct: 399 WRSGSSVVLYRGISY 413
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LG+ G+ +E +H HWK R ++K+ +G + ++ LE ++GG ++ G
Sbjct: 763 LGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKG 822
Query: 71 GLVYLFRGRNY 81
+ ++RG+NY
Sbjct: 823 YAIIVYRGKNY 833
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 170
LT E RR +++ P L +N L + + +E S++VK+ K G+ + ++
Sbjct: 529 LTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRNER 588
Query: 171 LGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ +LK L +LLS + E I+ +RG D+
Sbjct: 589 MAEELKVLTGGILLSRNKEYIVFYRGNDF 617
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 12 QVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGG 71
++ + + G+T + E IH W++ ++++K DM +E +TGG II+R G
Sbjct: 6 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 65
Query: 72 LVYLFRGRNY 81
++ ++RG NY
Sbjct: 66 VMVVYRGSNY 75
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKI--KCKGVPTVDMDNVCRRLEEKTGGKI--IFRV- 69
+G G+ ++E +H HWK R V+K+ K K +P V + R LE ++GG + I RV
Sbjct: 422 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFV--EETARLLEYESGGILVAIERVT 479
Query: 70 -GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEAD 118
G + +RG+NY R P L A + + + E L++H A+
Sbjct: 480 KGYALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQHIAE 528
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + LGR G+ +LE +H HWK R V+K+ + N + LE ++GG ++
Sbjct: 570 LKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLETESGGILV 629
Query: 67 ----FRVGGLVYLFRGRNYNYRTRPQYPL 91
+ G + ++RG+NY RP L
Sbjct: 630 SVDKLKEGHAIIIYRGKNYK---RPSIKL 655
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +V++ + GLT ++E IH W++ ++++K DM +E +TGG +
Sbjct: 198 MRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVERRTGGLVT 257
Query: 67 FRVGGLVYLFRGRNYN 82
+R G ++ ++RG +Y
Sbjct: 258 WRSGSVMMVYRGIDYQ 273
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF-----RV 69
LG G+ ++E +H HWK R ++K+ K +++ R LE ++GG ++ +
Sbjct: 610 LGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKE 669
Query: 70 GGLVYLFRGRNY 81
L+Y +RG+NY
Sbjct: 670 FALIY-YRGKNY 680
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
++ +V++ + GLT ++E IH W++ ++++K DM +E +TGG +
Sbjct: 197 MRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVERRTGGLVT 256
Query: 67 FRVGGLVYLFRGRNYN 82
+R G ++ ++RG +Y
Sbjct: 257 WRSGSVMMVYRGIDYQ 272
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF-----RV 69
LG G+ ++E +H HWK R ++K+ K +++ R LE ++GG ++ +
Sbjct: 610 LGIRGVFDGVVENMHLHWKHRELVKLMTKQKTVAFVEDTARLLEYESGGILVAIEKVSKE 669
Query: 70 GGLVYLFRGRNY 81
L+Y +RG+NY
Sbjct: 670 FALIY-YRGKNY 680
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FR 68
V LGR G+ ++E IH HWK + V+K+ K + LE +TGG +I
Sbjct: 596 VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLT 655
Query: 69 VGGLVYLFRGRNYNYRTRPQYPLMLWKPAA 98
+ L+RG+NY + + +L K A
Sbjct: 656 TSHAIILYRGKNYRRPAKSSFSNLLTKREA 685
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + + LGR G+ ++E +H HWK R V+K+ ++ + LE ++GG ++
Sbjct: 626 LKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILV 685
Query: 67 ----FRVGGLVYLFRGRNY 81
+ G + +FRG+NY
Sbjct: 686 SVDKLKEGYAIIIFRGKNY 704
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 15 LGRD----GLTHNMLELIHSHWKRRRVIKIKCK-GVPTVDMDNVCRRLEEKTGGKIIFRV 69
LGR+ GL ++L+L W++ + KI K GVP D + + L+ TGG ++ R
Sbjct: 421 LGRNRKLQGLAASILKL----WEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRN 476
Query: 70 GGLVYLFRGRNY 81
++ L+RG ++
Sbjct: 477 KFVIILYRGNDF 488
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + LGR G+ ++E +H HWK R V+K+ + + LE +TGG ++
Sbjct: 607 LKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQVIRTAKFLEAETGGILV 666
Query: 67 ----FRVGGLVYLFRGRNYNYRTRPQYPL 91
+ G + ++RG+NY RPQ L
Sbjct: 667 SIDKLKEGHAIIIYRGKNYR---RPQRLL 692
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCK-GVPTVDMDNVCRRLEEKTGGKIIFRVGGLV 73
LGR+ + I W+R + KI K G+P D + + L+ TGG ++ R +
Sbjct: 402 LGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANELKHLTGGVLLLRNKFFI 461
Query: 74 YLFRGRNY 81
LFRG+++
Sbjct: 462 ILFRGKDF 469
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + + LGR G+ ++E +H HWK R V+K+ ++ + LE ++GG ++
Sbjct: 626 LKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILV 685
Query: 67 ----FRVGGLVYLFRGRNY 81
+ G + +FRG+NY
Sbjct: 686 SVDKLKEGYAIIIFRGKNY 704
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCK-GVPTVDMDNVCRRLEEKTGGKIIFRVGGLV 73
LGR+ + I W++ + KI K GVP D + + L+ TGG ++ R ++
Sbjct: 421 LGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRNKFVI 480
Query: 74 YLFRGRNY 81
L+RG ++
Sbjct: 481 ILYRGNDF 488
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + ++K+ K + + LE +TGG +I
Sbjct: 593 LKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLI 652
Query: 67 FRV----GGLVYLFRGRNY 81
+ L+RG+NY
Sbjct: 653 ATQKLPHSHAIILYRGKNY 671
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVP-TVDMDNVCRRLEEK 60
L K L+ + ++G G+T ++ +H W+ V+K K G+P + M + LE K
Sbjct: 209 LRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKF-GIPLSAHMKKAHQILESK 267
Query: 61 TGGKIIFRVGGLVYLFRGRNY 81
GG +I+R G + L+RG Y
Sbjct: 268 IGGIVIWRSGSSIVLYRGMAY 288
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII-----FRV 69
LGR + +E +H HWK R ++K+ KG + + ++ LE ++GG ++ R
Sbjct: 638 LGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRG 697
Query: 70 GGLVYLFRGRNY 81
+ ++RG+NY
Sbjct: 698 HHTIIVYRGKNY 709
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 42/68 (61%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVG 70
+++++ + GLT ++L+ IH W ++K+K +M+ ++ +TGG +I+R G
Sbjct: 123 QKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLAHNIVQRRTGGLVIWRSG 182
Query: 71 GLVYLFRG 78
+++++RG
Sbjct: 183 SVMWVYRG 190
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 16 GRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV----GG 71
GR G+ ++E +H HWK R ++K+ KG P + + + LE ++GG ++ V G
Sbjct: 174 GRRGVFDGVVENMHLHWKHRELVKVIFKG-PIFEAEQTAKILEMESGGVLVGIVTTTKGQ 232
Query: 72 LVYLFRGRNYNY--RTRPQYPL 91
+ +RG+NY RP++ L
Sbjct: 233 AIIFYRGKNYQRPSELRPRHLL 254
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T +++ I WK ++++K +G ++M + LE KTGG +I+R G + L+
Sbjct: 237 GVTQAVVDAIQEKWKSSEIVRLKIEGASALNMRRMHEILERKTGGLVIWRSGTSIALYNY 296
Query: 79 RNYNYR 84
+ N R
Sbjct: 297 KGGNNR 302
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ +E +H HWK R +IKI K V LE ++GG ++ G
Sbjct: 691 LGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAMALEAESGGILVSVDKISKG 750
Query: 71 GLVYLFRGRNYNYRT--RPQYPLMLWKPAAPVYPKLIQEAPEGLTKH-EADELR 121
V ++RG++Y T RP+ L K A L + E L KH EA + R
Sbjct: 751 YAVIVYRGKDYKRPTTLRPKNLLTKRKALA---RSLELQKREALIKHIEAVQTR 801
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + +E +H HWK R ++K+ +G + ++ LE ++GG ++ G
Sbjct: 626 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 685
Query: 71 GLVYLFRGRNYN--YRTRP 87
+ L+RG+NY +R RP
Sbjct: 686 YAIILYRGKNYQMPFRLRP 704
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK N + LGR G+ ++E +H HWK R V K+ + + LE ++ G +I
Sbjct: 585 LKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLI 644
Query: 67 ----FRVGGLVYLFRGRNYNYRTRPQYPLM 92
+ G + ++RG+NY RP LM
Sbjct: 645 SIEKLKEGHAILIYRGKNYK---RPSSKLM 671
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK N + LGR G+ ++E +H HWK R V K+ + + LE ++ G +I
Sbjct: 583 LKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLI 642
Query: 67 ----FRVGGLVYLFRGRNYNYRTRPQYPLM 92
+ G + ++RG+NY RP LM
Sbjct: 643 SIEKLKEGHAILIYRGKNYK---RPSSKLM 669
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR + +E +H HWK R ++K+ +G + ++ LE ++GG ++ G
Sbjct: 625 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 684
Query: 71 GLVYLFRGRNYN--YRTRPQYPLMLWKPAAPVYPKLIQ-EAPEGLTKHEAD 118
+ L+RG+NY +R RP L K + + I+ + E L H AD
Sbjct: 685 YSIILYRGKNYQMPFRLRPSNLLTRKK----AFARSIELQRREALKYHVAD 731
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
M K LK + LGR G+ +E +H HWK R +IKI K V LE +
Sbjct: 672 MFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAE 731
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRT--RPQYPLMLWKPAAPVYPKLIQEAPEGLTK 114
+GG ++ G V ++RG++Y T RP+ L K A L + E L K
Sbjct: 732 SGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALA---RSLELQKREALIK 788
Query: 115 H-EADELR 121
H EA + R
Sbjct: 789 HIEAIQTR 796
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T +++ I WK ++++K +G ++M + LE KTGG +I+R G + L
Sbjct: 247 GVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIAL--- 303
Query: 79 RNYNYR 84
YNY+
Sbjct: 304 --YNYK 307
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
M K LK + LGR G+ +E +H HWK R +IKI K V LE +
Sbjct: 683 MFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAE 742
Query: 61 TGGKII----FRVGGLVYLFRGRNYNYRT--RPQYPLMLWKPAAPVYPKLIQEAPEGLTK 114
+GG ++ G V ++RG++Y T RP+ L K A L + E L K
Sbjct: 743 SGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALA---RSLELQKREALIK 799
Query: 115 H-EADELR 121
H EA + R
Sbjct: 800 HIEAIQTR 807
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 19 GLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRG 78
G+T +++ I WK ++++K +G ++M + LE KTGG +I+R G + L
Sbjct: 233 GVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIAL--- 289
Query: 79 RNYNYR 84
YNY+
Sbjct: 290 --YNYK 293
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ ++E +H HWK R ++K+ + + LE ++GG ++ + G
Sbjct: 656 LGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 715
Query: 71 GLVYLFRGRNY 81
+ ++RG+NY
Sbjct: 716 HAIIIYRGKNY 726
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 40/164 (24%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTV-----DMDNVCRRLEEKTGGKII--- 66
LGR + ++E +H HWK R+++KI K + D++N+ R LE ++GG ++
Sbjct: 366 LGRREVFSGVIENMHLHWKWRQLVKIIVKKSYFMYRERDDIENIARMLEIESGGVLVGIC 425
Query: 67 -FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEG------LTKHEADE 119
VG + ++RG+NY +P + P Q P+G LTK +A E
Sbjct: 426 TIPVGEAIIVYRGKNYQ------------RPNDGISP---QGHPDGLRPCGLLTKKQAWE 470
Query: 120 LRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGM 163
+ + + VY +L D+ N FE S + C M
Sbjct: 471 RFNQKR---------RKRVYFSLSLDL-NMFEILSRIVCVCVYM 504
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +++ K ++ + L
Sbjct: 165 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARL 224
Query: 61 TGGKII-FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
TGG ++ + ++RG+NY+ Q P + P + K + P+ H
Sbjct: 225 TGGIVLGIHEEDTIIMYRGKNYS-----QPPTEIMSPRVTLPRKKVLHVPKDCLHH 275
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK V +GR G+ ++ +H HWK+ + +++ K +++ + L TGG ++
Sbjct: 804 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVL 863
Query: 67 -FRVGGLVYLFRGRNY 81
G + ++RG+NY
Sbjct: 864 DVHEGNTIIMYRGKNY 879
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ ++E +H HWK R ++K+ + + LE ++GG ++ + G
Sbjct: 357 LGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 416
Query: 71 GLVYLFRGRNY 81
+ ++RG+NY
Sbjct: 417 HAIIIYRGKNY 427
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +++ K ++ + L
Sbjct: 165 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARL 224
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
TGG ++ + ++RG+NY+
Sbjct: 225 TGGIVLGIHEEDTIIMYRGKNYS 247
>gi|310779504|ref|YP_003967837.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309748827|gb|ADO83489.1| protein of unknown function UPF0044 [Ilyobacter polytropus DSM
2926]
Length = 101
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
V +G+DG++HN++E + R +IK+K VD V L EKTG +++ +G
Sbjct: 22 VRIGKDGMSHNLVESFLQAIESRELIKVKILQNSEVDKKEVAFELAEKTGSELVGIIGKT 81
Query: 73 VYLFR 77
+ ++
Sbjct: 82 LIFYK 86
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK V +GR G+ ++ +H HWK+ + +++ K ++ + L TGG ++
Sbjct: 861 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 920
Query: 67 -FRVGGLVYLFRGRNY 81
G + ++RG+NY
Sbjct: 921 DVHEGNTIIMYRGKNY 936
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +K+ K ++ + L
Sbjct: 125 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARL 184
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
+GG ++ + ++RG+NY+
Sbjct: 185 SGGIVLDIHEDNTIIMYRGKNYS 207
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +K+ K ++ + L
Sbjct: 105 FFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARL 164
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
+GG ++ + ++RG+NY+
Sbjct: 165 SGGIVLDIHEDNTIIMYRGKNYS 187
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
+G G+ ++E +H HWK R V+K+ K ++ R LE ++GG + I RV G
Sbjct: 68 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVEETARLLEYESGGILVAIERVPKG 127
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 128 HALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQH 171
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKI--IFRV--G 70
LG G+ ++E +H HWK R V+K+ K ++ R L ++GG + I RV G
Sbjct: 23 LGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEETARLLAYESGGILVAIERVPKG 82
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 83 YALIFYRGKNYR-RPINIRPRNLLTKAKALKRAVAMQRHEALSQH 126
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ + +++ K ++ + L +GG ++
Sbjct: 193 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLD 252
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKS 126
+ G + ++RG+NY +P P + PK+ + L K + E R +
Sbjct: 253 IQEGNTIIMYRGKNY---AQP--------PPEIMSPKVTLPRKKALDKSKYRERLRALRR 301
Query: 127 LLPIC--KLAKNGVYLTLVRDVR--NAFEGSSLVKVNCKGMHASDY 168
+P +L + L RD + NA E + + + A +Y
Sbjct: 302 YIPRLEQELVDLHAQMKLARDYKGQNAAEDITCISDSVNSTSAKEY 347
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +++ K ++ + L
Sbjct: 178 FFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARL 237
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
TGG ++ + ++RG+NY+
Sbjct: 238 TGGIVLDIHEENTIIMYRGKNYS 260
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ + +++ K ++ + L +GG ++
Sbjct: 200 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLS 259
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAP 99
+ G + ++RG+NY +P +M K A P
Sbjct: 260 IQEGNTIIMYRGKNY---AQPPPEIMSPKIALP 289
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ + +++ K ++ + L +GG ++
Sbjct: 193 KSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLD 252
Query: 67 FRVGGLVYLFRGRNY 81
+ G + ++RG+NY
Sbjct: 253 IQEGNTIIMYRGKNY 267
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ ++E +H HWK R V K+ + + LE ++ G +I + G
Sbjct: 600 LGRRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRVVYTAKSLEAESNGVLISIEKLKEG 659
Query: 71 GLVYLFRGRNYNYRTRPQYPLM 92
+ ++RG+NY RP LM
Sbjct: 660 HAILIYRGKNYK---RPSSKLM 678
>gi|307106930|gb|EFN55174.1| hypothetical protein CHLNCDRAFT_52520 [Chlorella variabilis]
Length = 187
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
+ LGR G + +V ++ C G +M + ++LE TGG ++ + GG
Sbjct: 82 IKLGRRGPAEGLAN---------QVARVYCHGKHAANMKVLVQQLEAATGGMVVHKAGGT 132
Query: 73 VYLFRGRNYNYRTRP 87
V L+RG + +P
Sbjct: 133 VLLYRGDGWQGGAQP 147
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
GR G+ ++E +H HWK R ++K+ + + LE ++GG ++ + G
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 71 GLVYLFRGRNY 81
+ ++RG+NY
Sbjct: 178 HAIIIYRGKNY 188
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 186 KKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPIN 245
Query: 68 RVGG-LVYLFRGRNY 81
+G + +RG+NY
Sbjct: 246 TIGNDTIVFYRGKNY 260
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 110 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHA-SDY 168
E L++ EA R G + K G+Y ++ ++ ++ V++ C ++ +
Sbjct: 123 EPLSEGEAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEET 182
Query: 169 KKLGAKLKELVPCVLLS-FDDEQILMWRGKDWKS---MYP 204
+++GA+L L ++L +D ++M+RGK++++ +YP
Sbjct: 183 RRIGAELARLSGGIVLDVLEDRTVIMFRGKNYQTPEELYP 222
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 186 KKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPIN 245
Query: 68 RVGG-LVYLFRGRNY 81
+G + +RG+NY
Sbjct: 246 TIGNDTIVFYRGKNY 260
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 186 KKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPIN 245
Query: 68 RVGG-LVYLFRGRNY 81
+G + +RG+NY
Sbjct: 246 TIGNDTIVFYRGKNY 260
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK V +GR G+ ++ +H HWK+ + +++ K ++ + L TGG ++
Sbjct: 190 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 249
Query: 67 -FRVGGLVYLFRGRNY 81
G + ++RG+NY
Sbjct: 250 DVHEGNTIIMYRGKNY 265
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
+K +K V +GR G+ ++ +H HWK+ + +K+ K ++ + L T
Sbjct: 219 FLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLT 278
Query: 62 GGKII-FRVGGLVYLFRGRNYN 82
GG ++ + ++RG+NY+
Sbjct: 279 GGLVLDIHEEDTIIMYRGKNYS 300
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVG 70
LGR G+ ++E +H HWK R V+K+ + + LE ++ G ++ + G
Sbjct: 549 LGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAESDGILVSVDKLKEG 608
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRR 122
+ ++RG+NY R +L K A LIQ G K+ A++ R
Sbjct: 609 HAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLIQRV--GSLKYFANQRER 658
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +K+ K ++ + L
Sbjct: 137 FFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARF 196
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
TGG ++ + ++RG+NY+
Sbjct: 197 TGGIVLDIHEENTIIMYRGKNYS 219
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 16 GRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVGG 71
GR G+ +E +H HWK R ++KI K D+ + LE ++GG ++ G
Sbjct: 8 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 67
Query: 72 LVYLFRGRNY 81
+ +FRG++Y
Sbjct: 68 AIVVFRGKDY 77
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK V +GR G+ ++ +H HWK+ + +++ K ++ + L TGG ++
Sbjct: 126 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 185
Query: 67 -FRVGGLVYLFRGRNY 81
G + ++RG+NY
Sbjct: 186 DVHEGNTIIMYRGKNY 201
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 468 KRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQ 527
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG+NY
Sbjct: 528 IIGDDTIIFYRGKNY 542
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII-FRVGG 71
V +GR G+ ++ +H HWK+ + +++ K ++ + L +GG ++ + G
Sbjct: 204 VPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLDIQDGN 263
Query: 72 LVYLFRGRNY 81
+ ++RG+NY
Sbjct: 264 TIIMYRGKNY 273
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII-FRVGG 71
V +GR G+ ++ +H HWK+ + +++ K ++ + L +GG ++ + G
Sbjct: 62 VPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDGN 121
Query: 72 LVYLFRGRNY 81
+ ++RG+NY
Sbjct: 122 TIIMYRGKNY 131
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +++ K ++ + L
Sbjct: 120 FFLKMGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARL 179
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
TGG ++ + ++RG+NY+
Sbjct: 180 TGGIVLDIHEENTIIMYRGKNYS 202
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
+K LK V +GR G+ ++ +H HWK+ + +++ K ++ + L
Sbjct: 50 FFLKMGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARL 109
Query: 61 TGGKII-FRVGGLVYLFRGRNYN 82
TGG ++ + ++RG+NY+
Sbjct: 110 TGGIVLDIHEENTIIMYRGKNYS 132
>gi|430750626|ref|YP_007213534.1| RNA-binding protein [Thermobacillus composti KWC4]
gi|430734591|gb|AGA58536.1| putative RNA-binding protein, YhbY family [Thermobacillus composti
KWC4]
Length = 96
Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKL 171
LT + LR L PI ++ K G+ L+R V A E L+KV+ D K++
Sbjct: 2 LTGKQKRFLRALAHPLNPIFQVGKGGINEHLIRHVSEALEARELIKVSVLNNQEGDPKEI 61
Query: 172 GAKLKELVPCVLLSFDDEQILMWR-GKDWKSM 202
GA++ E L+ + I+++R KD K +
Sbjct: 62 GAEIAERAGAELVQVIGKTIVLYRESKDHKKI 93
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
+G G+ ++E +H HWK R ++K+ K ++ R LE ++GG ++ RV G
Sbjct: 372 MGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKG 431
Query: 71 GLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKH 115
+ +RG+NY R P L A + + + E L++H
Sbjct: 432 YALVYYRGKNYR-RPIALRPRNLLTKAKALKRSVAMQRHEALSQH 475
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII-FRVGG 71
V +GR G+ ++ +H HWK+ + +++ K ++ + L +GG ++ + G
Sbjct: 205 VPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDGN 264
Query: 72 LVYLFRGRNY 81
+ ++RG+NY
Sbjct: 265 TIIMYRGKNY 274
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ +K+ CK L + G +I
Sbjct: 201 KKKHYVPVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVID 260
Query: 67 FRVGGLVYLFRGRNY 81
+ ++ +RGRNY
Sbjct: 261 IKPNNIIIFYRGRNY 275
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 16 GRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FRVGG 71
GR G+ +LE +H HWK R V K+ + + LE ++GG ++ + G
Sbjct: 698 GRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGY 757
Query: 72 LVYLFRGRNYN 82
+ ++RG+NY+
Sbjct: 758 AIIIYRGKNYS 768
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 89 KRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQ 148
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG+NY
Sbjct: 149 IIGDDTIIFYRGKNY 163
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 132 KRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQ 191
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG+NY
Sbjct: 192 IIGDDTIIFYRGKNY 206
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG I
Sbjct: 189 KKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPIN 248
Query: 68 RVGG-LVYLFRGRNY 81
VG V +RG++Y
Sbjct: 249 IVGNDTVVFYRGKDY 263
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
L K K + + +GR GL ++ +H HWK+ +K+ CK + + L +
Sbjct: 180 LKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLS 239
Query: 62 GGKIIFRVG-GLVYLFRGRNY 81
GG + +G + +RG+NY
Sbjct: 240 GGIPLQIIGDDTIIFYRGKNY 260
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF--RV--G 70
LG G+ ++E +H HWK R V+K+ K ++ R L ++GG ++ RV G
Sbjct: 23 LGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEETARLLAYESGGILVAIERVPKG 82
Query: 71 GLVYLFRGRNYN--YRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLL 128
+ +RG+NY RP+ L A + + + E L++H D+L K +
Sbjct: 83 YALIFYRGKNYRRPINIRPRNLL---TKAKALKRAVAMQRHEALSQH-IDQLESNIKQM- 137
Query: 129 PICKLAKNGVYLTLVRDVRNAFEGSSLVKVN 159
L L+R +RN + + K+N
Sbjct: 138 ----------KLDLLRTMRNKMRIAQIQKMN 158
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 108 APEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHAS 166
A + L+ E LRR K L P L +N L + ++ S LVK+ K G+ +
Sbjct: 389 AKKNLSNMELTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNT 448
Query: 167 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ + +L+ L VLLS D I ++RGKD+
Sbjct: 449 RNQLMAEELERLTGGVLLSRDKFFITLYRGKDF 481
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG +
Sbjct: 187 KKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVN 246
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG+NY
Sbjct: 247 IIGDDTIVFYRGKNY 261
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
+ +G+ G+ + I+SHW ++I C+G P + + ++ +G +I
Sbjct: 119 LTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVARMSGAVVIAVTEET 178
Query: 73 V--YLFRGRNYNYRTRP 87
+ L+RGRN+++ +P
Sbjct: 179 MSFILYRGRNFSHGYQP 195
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 109 PEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDY 168
PE L+ L+ + + + + K GV+ +RD+ + + +++ C+G
Sbjct: 97 PEYLSPEFMTALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKL 156
Query: 169 KKLGAKLKELVPCVLLSFDDEQI--LMWRGKDWKSMYPEPPSFSNPVD 214
+ + K+ + V+++ +E + +++RG+++ Y P N ++
Sbjct: 157 RPMAEKVARMSGAVVIAVTEETMSFILYRGRNFSHGYQPPSRIENMLN 204
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ +K+ CK +D L + G I
Sbjct: 193 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAID 252
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKS 126
R + +RG+NY V PK I P+ L+K +A E R +S
Sbjct: 253 IRPDNTIIFYRGKNY------------------VQPK-IMSPPDTLSKDKALEKYRYEQS 293
Query: 127 L 127
L
Sbjct: 294 L 294
>gi|312136400|ref|YP_004003737.1| hypothetical protein Mfer_0172 [Methanothermus fervidus DSM 2088]
gi|311224119|gb|ADP76975.1| protein of unknown function UPF0044 [Methanothermus fervidus DSM
2088]
Length = 87
Score = 38.9 bits (89), Expect = 3.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
VN+G+ G+T+N++ I K ++VIKI+ + + + KTG ++ G
Sbjct: 20 VNIGKRGITNNLINEIKRQLKAKKVIKIRFAKTISTRKNEYLEEIIRKTGASLVDLRGNT 79
Query: 73 VYLFRGRN 80
LF+ +N
Sbjct: 80 AVLFKNKN 87
>gi|374622754|ref|ZP_09695275.1| hypothetical protein ECTPHS_07002 [Ectothiorhodospira sp. PHS-1]
gi|373941876|gb|EHQ52421.1| hypothetical protein ECTPHS_07002 [Ectothiorhodospira sp. PHS-1]
Length = 96
Score = 38.9 bits (89), Expect = 4.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
V++GR+GLT ++E I +IKIK D + E+TG +++ RVG +
Sbjct: 21 VSIGRNGLTEPVMEEIRKALDHHELIKIKVAIGDREQRDAAIHEIREQTGAELVQRVGFI 80
Query: 73 VYLFR 77
LFR
Sbjct: 81 ATLFR 85
>gi|357473479|ref|XP_003607024.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
gi|355508079|gb|AES89221.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
Length = 285
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVY 74
+G+ G+T N++ + + ++KIK G ++++V ++LEE TG + ++G +
Sbjct: 169 VGKSGVTPNLVTAFSDNLEANELLKIKIHGSCPGELEDVVKQLEESTGSVTVGQIGRTLI 228
Query: 75 LFR 77
L+R
Sbjct: 229 LYR 231
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V LGR G+ ++ +H HWK+ +K+ C + + + +GG I
Sbjct: 158 KQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVICNFCKPGQVHEYAQEIARLSGGIPIQ 217
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG+NY
Sbjct: 218 VIGDDTIIFYRGKNY 232
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ +K+ CK + L + G +I
Sbjct: 184 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVID 243
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKS 126
+ + +RG+NY V PK++ PE L+K +A E R +S
Sbjct: 244 IKPNNTIMFYRGKNY------------------VQPKVMS-PPETLSKQKALEKYRYLQS 284
Query: 127 L 127
L
Sbjct: 285 L 285
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ +K+ CK + L + G +I
Sbjct: 187 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVID 246
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKS 126
+ + +RG+NY V PK++ P+ L+K +A E R +S
Sbjct: 247 IKPNNTIIFYRGKNY------------------VQPKVMS-PPDTLSKQKALEKYRYEQS 287
Query: 127 L 127
L
Sbjct: 288 L 288
>gi|68305022|gb|AAY90033.1| hypothetical protein [uncultured bacterium BAC13K9BAC]
Length = 97
Score = 38.1 bits (87), Expect = 6.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGL 72
V +G++GLT ++ I K +IK++ KG + C +++EK II R+G +
Sbjct: 24 VMIGQNGLTDAVINEIDVALKTHELIKVRAKGSDKDERTKQCMKIKEKLNADIIHRIGFI 83
Query: 73 VYLFR 77
L+R
Sbjct: 84 TVLYR 88
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + + +GG I
Sbjct: 182 KRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQ 241
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG++Y
Sbjct: 242 IIGDDTIIFYRGKDY 256
>gi|148544460|ref|YP_001271830.1| hypothetical protein Lreu_1236 [Lactobacillus reuteri DSM 20016]
gi|184153825|ref|YP_001842166.1| hypothetical protein LAR_1170 [Lactobacillus reuteri JCM 1112]
gi|194466642|ref|ZP_03072629.1| protein of unknown function UPF0044 [Lactobacillus reuteri
100-23]
gi|227363112|ref|ZP_03847247.1| RNA-binding protein [Lactobacillus reuteri MM2-3]
gi|227543937|ref|ZP_03973986.1| RNA-binding protein [Lactobacillus reuteri CF48-3A]
gi|325682782|ref|ZP_08162298.1| RNA-binding protein [Lactobacillus reuteri MM4-1A]
gi|338202608|ref|YP_004648753.1| RNA-binding protein [Lactobacillus reuteri SD2112]
gi|423335619|ref|ZP_17313394.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|148531494|gb|ABQ83493.1| protein of unknown function UPF0044 [Lactobacillus reuteri DSM
20016]
gi|183225169|dbj|BAG25686.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|194453678|gb|EDX42575.1| protein of unknown function UPF0044 [Lactobacillus reuteri
100-23]
gi|227071830|gb|EEI10118.1| RNA-binding protein [Lactobacillus reuteri MM2-3]
gi|227186088|gb|EEI66159.1| RNA-binding protein [Lactobacillus reuteri CF48-3A]
gi|324977132|gb|EGC14083.1| RNA-binding protein [Lactobacillus reuteri MM4-1A]
gi|336447848|gb|AEI56463.1| RNA-binding protein [Lactobacillus reuteri SD2112]
gi|337728849|emb|CCC03968.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 103
Score = 38.1 bits (87), Expect = 7.3, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 14 NLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLV 73
++G+DGLT N L + RR +IK+ V D V +EEKT +++ +G ++
Sbjct: 23 SVGKDGLTDNWLAQLDGALDRRELIKVSILQNSDVTTDEVRELIEEKTSIQVVQVIGRVL 82
Query: 74 YLFR 77
LF+
Sbjct: 83 VLFK 86
>gi|225427732|ref|XP_002265886.1| PREDICTED: uncharacterized protein LOC100243481 [Vitis vinifera]
gi|297744749|emb|CBI38011.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVY 74
+G+ G+T ++ + + ++KIK G ++ +V ++LEE TG ++ ++G V
Sbjct: 169 VGKQGVTASVASAFIENLESNELLKIKIHGTCPGELPDVVKQLEESTGSVVVGQIGRSVI 228
Query: 75 LFR 77
L+R
Sbjct: 229 LYR 231
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ +K+ CK + L + G +I
Sbjct: 196 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVID 255
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKS 126
+ + +RG+NY V PK++ P+ L+K +A E R +S
Sbjct: 256 IKPNNTIIFYRGKNY------------------VQPKVMS-PPDTLSKQKALEKYRYEQS 296
Query: 127 L 127
L
Sbjct: 297 L 297
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII- 66
K V +GR G+ ++ +H HWK+ +K+ CK + L + G +I
Sbjct: 184 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVID 243
Query: 67 FRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKS 126
+ + +RG+NY V PK++ P+ L+K +A E R +S
Sbjct: 244 IKPNNTIIFYRGKNY------------------VQPKVM-SPPDTLSKQKALEKYRYEQS 284
Query: 127 L 127
L
Sbjct: 285 L 285
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII-FRVGGLV 73
+GR G+ ++ +H HWK+ +KI CK + L + G +I R +
Sbjct: 127 VGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIRPNNSI 186
Query: 74 YLFRGRNY 81
+RG+NY
Sbjct: 187 IFYRGKNY 194
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K + V +GR G+ ++ +H HWK+ +K+ CK + + +GG +
Sbjct: 187 KKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVN 246
Query: 68 RVG-GLVYLFRGRNY 81
+G + +RG++Y
Sbjct: 247 VIGDDTIVFYRGKSY 261
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,202,093,540
Number of Sequences: 23463169
Number of extensions: 281398195
Number of successful extensions: 1129743
Number of sequences better than 100.0: 531
Number of HSP's better than 100.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 1125724
Number of HSP's gapped (non-prelim): 3087
length of query: 356
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 213
effective length of database: 9,003,962,200
effective search space: 1917843948600
effective search space used: 1917843948600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)