BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018444
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/360 (66%), Positives = 287/360 (79%), Gaps = 11/360 (3%)
Query: 1 MLVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEK 60
ML+KP + DNRQVNLGRDG THNMLELIHSHWKRRRV K++CKGVPTVDM+NVCR LEEK
Sbjct: 210 MLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEK 269
Query: 61 TGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADEL 120
TGG+II RVGG+VYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQE PEGLTK EA E
Sbjct: 270 TGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEF 329
Query: 121 RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVP 180
R KGKSL PICKL+KNGVY++LV+DVR+AFE SSLVKV+C G+ SDYKK+GAKLKELVP
Sbjct: 330 RVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVP 389
Query: 181 CVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPS---QGTIR 237
CVLLSFDDEQILMWRG++WKS + + P + + + + D S PS++ + T
Sbjct: 390 CVLLSFDDEQILMWRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTI 449
Query: 238 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGA 297
SSPKMISLW+RA+ES+KA++L+E++LGPDDLLKKVEE EG S AAEH+Y A+VLS DGA
Sbjct: 450 SSPKMISLWQRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGA 509
Query: 298 SSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSDVV-PLGSLPVDHIAERLQRK 356
+ + +D S+ E+Y + D + DDE D +S D V P+GSLPVD I +L+ +
Sbjct: 510 AEDYVDEKDRSE-------EYYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKLRER 562
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 271/369 (73%), Gaps = 17/369 (4%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 242 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 301
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGR+Y+ +TRP+YPLMLWKPA PVYPKLI+EAP+G TK EADE+R
Sbjct: 302 GGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMR 361
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ LLPICKLAKNG+Y+TLV+DVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 362 RKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 421
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFDDEQILM RGK+WKS Y +P + V +L + + S SD +Q IR
Sbjct: 422 VLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIRE 481
Query: 239 --SPKMISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LWK A++S+ AL+LD+ NL PD LL VEEF SQA EHS+PAL+++
Sbjct: 482 VLRPKMFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTN 541
Query: 294 EDGASSSM-AEY---EDGSQSENYDEDEFYPEDDFNDDDEFYDSDS----SDVVPLGSLP 345
D ++ S+ AEY E + +E + D DD+ F D D VPLGSLP
Sbjct: 542 GDASTDSLSAEYMNDEPETSVAGNEEGQLEQSPDLRDDEHF-DVDMFERLESSVPLGSLP 600
Query: 346 VDHIAERLQ 354
+D + ERL
Sbjct: 601 IDSMIERLN 609
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 273/370 (73%), Gaps = 19/370 (5%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVKP + NRQ+N+GRDGLTHNMLE+IH HW+R+ + K++C+GVPTVDM N+C LEEK+
Sbjct: 238 LVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKS 297
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQEAPEGLTK EADE+R
Sbjct: 298 GGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMR 357
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
R+GK LLPICKLAKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPC
Sbjct: 358 RRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPC 417
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS 238
VLLSFD+EQILM+RGK+WKS YP+P + + ++ ++ D S +DD + +R
Sbjct: 418 VLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVRE 477
Query: 239 --SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSR 293
PKM LW AIES+ AL+LD+ L PD LL +VE+F SQ EHS+PA++++
Sbjct: 478 VLRPKMFELWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVAN 537
Query: 294 EDGASSSM-AEY-----EDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSL 344
++ + AEY E G+ Q + E EDD +DD +SS VPLG+L
Sbjct: 538 DESNPDVLNAEYTEDEPETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESS--VPLGAL 595
Query: 345 PVDHIAERLQ 354
P+D + ++L
Sbjct: 596 PIDAVVKQLN 605
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 316 bits (809), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 229/367 (62%), Gaps = 14/367 (3%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV TVDMDNVC++LEEK
Sbjct: 193 LVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKV 252
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I GG+++LFRGRNYNYRTRP YPLMLWKPAAPVYP+L+++ P+GLT EA+++R
Sbjct: 253 GGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMR 312
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
++G+ L PICKL KNGVYL LV+ VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 313 KRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 372
Query: 182 VLLSFDDEQILMWRGKDWKSMYP--EPPSFSNPVDLDIAGDADGSG---TPSDDPSQGTI 236
LLSF+ E ILMWRG DWKS P E F D + GSG TP + + T
Sbjct: 373 TLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQILNSKEAGSGSALTPIELVNNATS 432
Query: 237 RSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDG 296
+I ++ +S K+ + + LG V EGI + + S +
Sbjct: 433 LKKCNLIEGAEKLEDSMKSSFENGMILGSACGNPGVCNSEGIDGTESSADAPIEFSPSNS 492
Query: 297 A-----SSSMAEYEDGS---QSENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDH 348
A S + Y S +SEN + E YP D + ++ D + +GS H
Sbjct: 493 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYP-DRCGNSEQSPDVPEALTCLMGSSDEIH 551
Query: 349 IAERLQR 355
E ++R
Sbjct: 552 ELETMRR 558
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 110 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 169
E LTK E DEL + + ++G+ ++ ++ + ++ + K+ CKG+ D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 170 KLGAKLKELVPCVLLSFDDEQILMWRGKDW----KSMYP 204
+ +L+E V ++ I ++RG+++ + +YP
Sbjct: 243 NVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYP 281
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 315 bits (807), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 138/205 (67%), Positives = 172/205 (83%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LV LK RQ+N+GRDGLTHNML IH WKRRRV KIKCKGV TVDMDNVC +LEEK
Sbjct: 251 LVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKI 310
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I+R GG+++LFRGRNYN+RTRP++PLMLWKP APVYP+LIQ+ PEGLT+ EA +R
Sbjct: 311 GGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMR 370
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
RKG+ L+PICKL KNGVY LV++V+ AFE LV+++C+GM SD++K+GAKLK+LVPC
Sbjct: 371 RKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPC 430
Query: 182 VLLSFDDEQILMWRGKDWKSMYPEP 206
VL+SF++EQIL+WRG++WKS P
Sbjct: 431 VLVSFENEQILIWRGREWKSSLTTP 455
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 307 bits (786), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 163/203 (80%)
Query: 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKT 61
LVK LK RQ+N+GRDGLTHNMLE IHSHWKR+RV KIKCKGV T+DMDN+C +LEEK
Sbjct: 193 LVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKV 252
Query: 62 GGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELR 121
GGK+I R GG+++LFRGRNYNYRTRP +PLMLWKP APVYP+L+ + P GLT EA E+R
Sbjct: 253 GGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMR 312
Query: 122 RKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPC 181
+G L PICKL KNGVY LV VR AFE LV+V+C G++ SD +K+GAKLK+LVPC
Sbjct: 313 TRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPC 372
Query: 182 VLLSFDDEQILMWRGKDWKSMYP 204
+LLSF+ E ILMWRG DWKS P
Sbjct: 373 ILLSFEFEHILMWRGSDWKSSLP 395
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 110 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 169
E LTK E EL + + ++G+ ++ ++ + ++ + K+ CKG+ D
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 170 KLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSF 209
+ +L+E V ++ I ++RG+++ Y P F
Sbjct: 243 NICHQLEEKVGGKVIHRQGGVIFLFRGRNYN--YRTRPCF 280
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 146/192 (76%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
+ +Q+NLGRDGLTHNML IH+HWK +++KC GVPTVDM NVC +LE+KTGG II
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
R GG + L+RGR+YN + RP PLMLWKPA PVYP+LI+ EGLT E E+R+KG +
Sbjct: 233 RHGGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYV 292
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF LV+++ KG+ SDY+K+G KL++LVPC+++SFD
Sbjct: 293 PVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFD 352
Query: 188 DEQILMWRGKDW 199
EQI++WRGKD+
Sbjct: 353 KEQIIVWRGKDY 364
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 143/188 (76%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
+RQ+NLG+ G+THNM++ IH+HWKR ++IKC GVPT+DMDN+C LE+KTGGK+I+R
Sbjct: 163 SRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRN 222
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ + RPQ PLMLWKP AP+YP+L+Q +GLT + ELR G + P
Sbjct: 223 INILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSP 282
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR AF+ +V+++C + +SD KK+G KL++LVPCV L F DE
Sbjct: 283 LMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDE 342
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 343 QIILWRGK 350
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 145/193 (75%)
Query: 8 KDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIF 67
K RQVNLGRDGLTHNML +++HWK +++KC GVPT+DM NV LE+KT G+++
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 68 RVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSL 127
+ G + L+RGRNY+ + RP+ PLMLWKP PVYP+LI+ +GL+ E +R+KG ++
Sbjct: 235 KHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAV 294
Query: 128 LPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 187
+ KLAKNG Y +LV VR+AF S LV+++C G+ DYKK+GAKL++LVPC+L++FD
Sbjct: 295 PALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFD 354
Query: 188 DEQILMWRGKDWK 200
EQ+++WRGKD+K
Sbjct: 355 KEQVVIWRGKDYK 367
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 137/188 (72%)
Query: 10 NRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV 69
RQ+NLG+ G+THNM++ IH+HWK+ ++IKC GVPT+DMDN+C LEEK+GGKI++R
Sbjct: 161 TRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRN 220
Query: 70 GGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLP 129
++ L+RGRNY+ ++RP PLMLWKP P+YP+L++ +GL E E+R +G
Sbjct: 221 INILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPA 280
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
+ KL +NGVY+ +V VR FE +V+++C + SD K++G KLKE+VPCV + F DE
Sbjct: 281 LMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDE 340
Query: 190 QILMWRGK 197
QI++WRGK
Sbjct: 341 QIILWRGK 348
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK + V LGR G+ ++E IH HWK + V+K+ K + LE +TGG +I
Sbjct: 579 LKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLI 638
Query: 67 ----FRVGGLVYLFRGRNYNYRTR 86
F + L+RG+NY T+
Sbjct: 639 AIERFTTSHAIILYRGKNYRRPTK 662
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCK-GVPTVDMDNVCRRLEEKTGGKIIFRVGGLV 73
LGR+ + I W++ + K+ K G+ + + + R L+ TGG +I R +
Sbjct: 375 LGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYI 434
Query: 74 YLFRGRNY 81
++RG+++
Sbjct: 435 IIYRGKDF 442
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 99 PVYPKLIQEAPEGLTKHEADE----LRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSS 154
P + ++ P G+ ADE LR+ + L L +N L + +E S
Sbjct: 337 PDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSL 396
Query: 155 LVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 199
+ KV K G+ ++++++ LK L ++ + + I+++RGKD+
Sbjct: 397 IAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDF 442
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 11 RQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVD-----MDNVCRRLEEKTGGKI 65
R + G+T ++E + W + + + GV V+ MD LE KTGG +
Sbjct: 172 RWARAKKAGITDEVVEEVRGQWAKGQ----ELAGVRIVEPLRRCMDRAREILEIKTGGLV 227
Query: 66 IFRVGGLVYLFRGRNY 81
++ GG+ +++RG +Y
Sbjct: 228 VWTRGGIHFVYRGSSY 243
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 13 VNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII----FR 68
V LGR G+ ++E IH HWK + V+K+ K T + LE +TGG +I
Sbjct: 583 VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLT 642
Query: 69 VGGLVYLFRGRNYNYRTRPQYPLMLWKPAA 98
+ L+RG+NY + + +L K A
Sbjct: 643 TSHAIILYRGKNYRRPAKSSFSNLLTKREA 672
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 15 LGRDGLTHNMLELIHSHWKRRRVIKIKCK-GVPTVDMDNVCRRLEEKTGGKIIFRVGGLV 73
LGR+ + I W++ + KI K G+ + + + L+ TGG +I R +
Sbjct: 373 LGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFI 432
Query: 74 YLFRGRNY 81
L+RG+++
Sbjct: 433 ILYRGKDF 440
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 110 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 169
E LT+ E RR G+ + + L + G++ ++ ++ ++ +VKV K
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIM 621
Query: 170 KLGAKLKELVPCVLLSFD----DEQILMWRGKDWKSMYPEPPSFSN 211
+ L+ +L++ + I+++RGK+++ P SFSN
Sbjct: 622 YAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRR--PAKSSFSN 665
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK N + LGR G+ ++E +H HWK R V K+ + + LE ++ G +I
Sbjct: 585 LKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLI 644
Query: 67 ----FRVGGLVYLFRGRNYNYRTRPQYPLM 92
+ G + ++RG+NY RP LM
Sbjct: 645 SIEKLKEGHAILIYRGKNYK---RPSSKLM 671
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 LKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKII 66
LK V +GR G+ ++ +H HWK+ + +++ K ++ + L TGG ++
Sbjct: 190 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 249
Query: 67 -FRVGGLVYLFRGRNY 81
G + ++RG+NY
Sbjct: 250 DVHEGNTIIMYRGKNY 265
>sp|Q42968|SSG1_ORYGL Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza glaberrima GN=WAXY PE=1 SV=1
Length = 609
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 131 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190
C A G + V + + F L VNCK + SD KK+ A LK + V +E
Sbjct: 501 CACASTGGLVDTVIEGKTGFHMGRL-SVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 559
Query: 191 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 223
+ L W+G K+W+++ + L +AG A G
Sbjct: 560 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
>sp|Q9SR02|MED14_ARATH Mediator of RNA polymerase II transcription subunit 14
OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
Length = 1703
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 222 DGSGTPS--DDPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEF---E 276
DGSG P +DPS I + K+ R +E D++NL D++K V F E
Sbjct: 558 DGSGKPQSFNDPSN--ILRAKKIDIGQIRILE-------DDLNLITSDVVKFVSSFSDAE 608
Query: 277 GISQAAEHSYPALV---LSREDGASSSMAEYEDG 307
GI+QA+ H P LV L+ G+ S + DG
Sbjct: 609 GINQASGHRQPGLVDEALTEMSGSQLSFSSVVDG 642
>sp|Q5JGF1|PYRG_PYRKO CTP synthase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=pyrG PE=3 SV=1
Length = 533
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 81 YNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEA-DELRRKGKSLLPICKLAKNGVY 139
Y+ + PLML K P Y PE EA E+ K KSL ++A G Y
Sbjct: 238 YDVEDTYEVPLMLEKEGLPAYLARRLGLPEREPDLEAWREMVEKYKSLTDTVEIAIVGKY 297
Query: 140 LTLV---RDVRNAFEGSSL---VKVNCKGMHASDYKKLGAKLKELVPCVLL 184
+ L ++ A + SS+ VKV + + A D ++ G KL E V +++
Sbjct: 298 VKLADSYLSIKEALKHSSVANDVKVKIRWIEAEDVERQGVKLLEGVDGIIV 348
>sp|Q0DEV5|SSG1_ORYSJ Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 131 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190
C A G + V + + F L V+CK + SD KK+ A LK + V +E
Sbjct: 501 CACASTGGLVDTVIEGKTGFHMGRL-SVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 559
Query: 191 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 223
+ L W+G K+W+++ + L +AG A G
Sbjct: 560 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
>sp|A2Y8X2|SSG1_ORYSI Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2
Length = 609
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 131 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190
C A G + V + + F L V+CK + SD KK+ A LK + V +E
Sbjct: 501 CACASTGGLVDTVIEGKTGFHMGRL-SVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 559
Query: 191 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 223
+ L W+G K+W+++ + L +AG A G
Sbjct: 560 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
>sp|Q39W79|ILVD_GEOMG Dihydroxy-acid dehydratase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=ilvD PE=3 SV=1
Length = 553
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 15/189 (7%)
Query: 130 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 189
I L +NGV + R AFE + V + G + L + V L +FD
Sbjct: 237 IVDLVRNGVTPRQIL-TRAAFENAIRVDLALGGSSNTVLHLLAIAREAGVDLPLETFD-- 293
Query: 190 QILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQGTIRSSPKMISLWKRA 249
IL SM P F DLD AG G GTI+ SP ++ L R
Sbjct: 294 -ILSKETPQIASMNPAGEYFME--DLDAAGGVVGV----LKQLGGTIKDSPTVLGLTTRE 346
Query: 250 IESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQ 309
+ ST V + + D +KK GI+ + P + ++ G S+ M ++E
Sbjct: 347 LASTVESVDERVIRPVSDPVKKE---GGIAVLFGNLAPKGAVVKQSGVSAPMMQFE--GT 401
Query: 310 SENYDEDEF 318
+ +D +E
Sbjct: 402 ARCFDSEEL 410
>sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168)
GN=yqeI PE=4 SV=1
Length = 96
Score = 32.0 bits (71), Expect = 6.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKV----NCK 161
LT + LR K L PI ++ K GV +++ + A E L+KV NC+
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQVGKGGVNDNMIKQIAEALEARELIKVSVLQNCE 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,498,626
Number of Sequences: 539616
Number of extensions: 6701930
Number of successful extensions: 29874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 28852
Number of HSP's gapped (non-prelim): 707
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)