Query 018444
Match_columns 356
No_of_seqs 227 out of 644
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.9 2.5E-24 8.6E-29 177.4 10.4 79 2-80 11-89 (98)
2 1jo0_A Hypothetical protein HI 99.9 2.9E-24 1E-28 177.0 9.3 87 111-197 2-88 (98)
3 1rq8_A Conserved hypothetical 99.9 5.4E-24 1.9E-28 177.3 9.8 78 3-80 11-88 (104)
4 1rq8_A Conserved hypothetical 99.9 1.2E-23 4E-28 175.4 11.5 87 112-198 2-88 (104)
5 3ka5_A Ribosome-associated pro 65.9 17 0.0006 27.7 6.4 49 36-84 1-52 (65)
6 3p04_A Uncharacterized BCR; SE 63.1 31 0.001 27.5 7.6 56 26-82 19-77 (87)
7 3k2t_A LMO2511 protein; lister 49.6 18 0.00061 26.8 3.9 48 36-83 1-51 (57)
8 3lyv_A Ribosome-associated fac 44.7 21 0.00072 27.3 3.7 49 36-84 2-53 (66)
9 2jz2_A SSL0352 protein; SH3-li 32.7 27 0.00091 26.9 2.5 18 65-82 23-42 (66)
10 2e6x_A TT1592, hypothetical pr 30.3 26 0.00089 27.1 2.1 17 55-71 3-19 (69)
11 3ka5_A Ribosome-associated pro 29.9 1.7E+02 0.0058 22.1 6.6 47 155-201 2-51 (65)
12 2h9u_A DNA/RNA-binding protein 26.7 1.6E+02 0.0054 23.9 6.4 66 10-75 6-75 (102)
13 2bky_A DNA/RNA-binding protein 22.3 2.2E+02 0.0077 22.7 6.5 64 10-74 9-77 (97)
14 1nfj_A ALBA, conserved hypothe 20.8 2.6E+02 0.009 21.9 6.5 57 11-68 4-62 (89)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.91 E-value=2.5e-24 Score=177.40 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=76.0
Q ss_pred cccCcccCCCeeeeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcEEEEEeccC
Q 018444 2 LVKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRGRN 80 (356)
Q Consensus 2 l~K~~lkmkpvV~IGK~GVTd~VVeeIh~awk~rELVKVK~l~~~~~dmk~iae~Le~kTGg~VVqrIG~~iVLYRg~n 80 (356)
|-..|++++|+|+|||+|||++|+++|++||++||||||+|++++..+++++|++|+++|||++||+||+++||||++.
T Consensus 11 Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vLyR~~~ 89 (98)
T 1jo0_A 11 LKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPSE 89 (98)
T ss_dssp HHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEEECCCS
T ss_pred HHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEccCC
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.90 E-value=2.9e-24 Score=177.01 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHccCCCcceeecccccccHHHHHHHHHHhhcCceEEEEeeCCCCCcHHHHHHHHHhhcCcEEEEEeCCE
Q 018444 111 GLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 190 (356)
Q Consensus 111 ~LT~kErtyLRrla~~l~Pif~LGKngv~~gLv~aI~ea~Ek~ELVKI~vkg~~~~D~keiA~eLk~lTg~vLVs~~g~~ 190 (356)
.||++|+.|||++|+++.|+|+|||+|++++++..|+++|++||||||.|+++|..|.+++|++|++.|||++||++|+.
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecC
Q 018444 191 ILMWRGK 197 (356)
Q Consensus 191 IVLYRGk 197 (356)
+||||+.
T Consensus 82 ~vLyR~~ 88 (98)
T 1jo0_A 82 LVLYRPS 88 (98)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999987
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.90 E-value=5.4e-24 Score=177.34 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=75.7
Q ss_pred ccCcccCCCeeeeCCCCCCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcEEEEEeccC
Q 018444 3 VKPLLKDNRQVNLGRDGLTHNMLELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRGRN 80 (356)
Q Consensus 3 ~K~~lkmkpvV~IGK~GVTd~VVeeIh~awk~rELVKVK~l~~~~~dmk~iae~Le~kTGg~VVqrIG~~iVLYRg~n 80 (356)
-..|++++|+|+|||+|||++|+++|+++|++||||||||++++..+++++|+.|+++|||++||+||+++||||++.
T Consensus 11 R~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR~~~ 88 (104)
T 1rq8_A 11 RSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYRESK 88 (104)
T ss_dssp HHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEECCC
T ss_pred HHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEeCCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.90 E-value=1.2e-23 Score=175.38 Aligned_cols=87 Identities=23% Similarity=0.387 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHccCCCcceeecccccccHHHHHHHHHHhhcCceEEEEeeCCCCCcHHHHHHHHHhhcCcEEEEEeCCEE
Q 018444 112 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQI 191 (356)
Q Consensus 112 LT~kErtyLRrla~~l~Pif~LGKngv~~gLv~aI~ea~Ek~ELVKI~vkg~~~~D~keiA~eLk~lTg~vLVs~~g~~I 191 (356)
||++|+.|||++|+.+.|+|+|||+|++++++.+|.++|+++|||||.|+++|..|.+++|++|++.|||++||++|+.+
T Consensus 2 Lt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~ 81 (104)
T 1rq8_A 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMI 81 (104)
T ss_dssp CCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 018444 192 LMWRGKD 198 (356)
Q Consensus 192 VLYRGkd 198 (356)
||||++.
T Consensus 82 VLYR~~~ 88 (104)
T 1rq8_A 82 VIYRESK 88 (104)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999875
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=65.90 E-value=17 Score=27.67 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=40.4
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEeccCCCCC
Q 018444 36 RVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV---GGLVYLFRGRNYNYR 84 (356)
Q Consensus 36 ELVKVK~l~~~~~dmk~iae~Le~kTGg~VVqrI---G~~iVLYRg~nY~~~ 84 (356)
++|+.|--...+.+.++++.+++-.-.--+|-+- |..-|+||++..++.
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEE
Confidence 5788898888899999999999986555666664 899999999877643
No 6
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=63.08 E-value=31 Score=27.52 Aligned_cols=56 Identities=7% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHH---HhCCeEEEEECcEEEEEeccCCC
Q 018444 26 ELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEE---KTGGKIIFRVGGLVYLFRGRNYN 82 (356)
Q Consensus 26 eeIh~awk~rELVKVK~l~~~~~dmk~iae~Le~---kTGg~VVqrIG~~iVLYRg~nY~ 82 (356)
.+|-++++.+..|-|.+.+-...+.+++.+.+.- ..+|.+ +++|..++|+=++|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i-~kI~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKM-QKIDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEE-EEEcCCEEEEECCCeE
Confidence 5789999999999999999999999999999875 567765 6778888888888776
No 7
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=49.63 E-value=18 Score=26.77 Aligned_cols=48 Identities=8% Similarity=0.221 Sum_probs=35.1
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEeccCCCC
Q 018444 36 RVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV---GGLVYLFRGRNYNY 83 (356)
Q Consensus 36 ELVKVK~l~~~~~dmk~iae~Le~kTGg~VVqrI---G~~iVLYRg~nY~~ 83 (356)
++|+.|-......+.++++.+++..-.--+|-+- |..-|+||.+..++
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 3566666666778999999999987666666653 99999999987653
No 8
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=44.66 E-value=21 Score=27.27 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=38.3
Q ss_pred CeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEeccCCCCC
Q 018444 36 RVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRV---GGLVYLFRGRNYNYR 84 (356)
Q Consensus 36 ELVKVK~l~~~~~dmk~iae~Le~kTGg~VVqrI---G~~iVLYRg~nY~~~ 84 (356)
++|+.|--...+.+.++++.+++-.-.--+|-+- |..-|+||++..++.
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEE
Confidence 4677777777888999999999986555666654 999999999877643
No 9
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=32.67 E-value=27 Score=26.90 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=16.5
Q ss_pred EEEEE--CcEEEEEeccCCC
Q 018444 65 IIFRV--GGLVYLFRGRNYN 82 (356)
Q Consensus 65 VVqrI--G~~iVLYRg~nY~ 82 (356)
+|||+ |++.|||-|.|++
T Consensus 23 ~VQRvsdgkaaVLFEGGnWD 42 (66)
T 2jz2_A 23 LVQRVSDGKAAVLFENGNWD 42 (66)
T ss_dssp EEEEEETTEEEEEEESSSCE
T ss_pred EEEEecCCcEEEEecCCCce
Confidence 68988 9999999999987
No 10
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=30.28 E-value=26 Score=27.08 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=14.0
Q ss_pred HHHHHHhCCeEEEEECc
Q 018444 55 RRLEEKTGGKIIFRVGG 71 (356)
Q Consensus 55 e~Le~kTGg~VVqrIG~ 71 (356)
..+-+++|+.+|||||+
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhceeEEeecc
Confidence 34567799999999987
No 11
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=29.87 E-value=1.7e+02 Score=22.14 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=36.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHhhcCcEEEEEe---CCEEEEEecCCCCC
Q 018444 155 LVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD---DEQILMWRGKDWKS 201 (356)
Q Consensus 155 LVKI~vkg~~~~D~keiA~eLk~lTg~vLVs~~---g~~IVLYRGkd~~~ 201 (356)
+||..--...+.+.++...++.-+-.-.+|-++ |+-=|+||.+|..=
T Consensus 2 iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~y 51 (65)
T 3ka5_A 2 IVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNY 51 (65)
T ss_dssp EEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCE
T ss_pred eEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCE
Confidence 556555577899999999999887777777776 56689999998753
No 12
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=26.71 E-value=1.6e+02 Score=23.91 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCeeeeCCCCCCHHHHHHHHHHHHh-CCeEEEEecCCChhhHHHHHHHHHHHh-CCeEEEE--ECcEEEE
Q 018444 10 NRQVNLGRDGLTHNMLELIHSHWKR-RRVIKIKCKGVPTVDMDNVCRRLEEKT-GGKIIFR--VGGLVYL 75 (356)
Q Consensus 10 kpvV~IGK~GVTd~VVeeIh~awk~-rELVKVK~l~~~~~dmk~iae~Le~kT-Gg~VVqr--IG~~iVL 75 (356)
...|.||+.|+..-+...++..+.. ..=|.||-.|..-...-.+|++|.++. +|.-|+. +|...+-
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~ 75 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIE 75 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEe
Confidence 3789999999977777776456654 678889999988888889999999999 6765564 4665553
No 13
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=22.27 E-value=2.2e+02 Score=22.73 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCeeeeCCCCCCHHHHHHHHHHHHh-CCeEEEEecCCChhhHHHHHHHHHHHhCCe-E-EEE--ECcEEE
Q 018444 10 NRQVNLGRDGLTHNMLELIHSHWKR-RRVIKIKCKGVPTVDMDNVCRRLEEKTGGK-I-IFR--VGGLVY 74 (356)
Q Consensus 10 kpvV~IGK~GVTd~VVeeIh~awk~-rELVKVK~l~~~~~dmk~iae~Le~kTGg~-V-Vqr--IG~~iV 74 (356)
...|.||+.|+. +.+...-..+.. ..=|.||-.+..-...-.++++|.++..+. + ++. +|..-+
T Consensus 9 ~n~I~V~~k~v~-~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i 77 (97)
T 2bky_A 9 SNVVLIGKKPVM-NYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVV 77 (97)
T ss_dssp CCEEECCSSCHH-HHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEE
T ss_pred CCEEEEcCcCHH-HHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEE
Confidence 478999999965 444444445654 678999999988888889999999998653 5 564 465554
No 14
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=20.82 E-value=2.6e+02 Score=21.91 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=44.3
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHh-CCeEEEEecCCChhhHHHHHHHHHHHh-CCeEEEE
Q 018444 11 RQVNLGRDGLTHNMLELIHSHWKR-RRVIKIKCKGVPTVDMDNVCRRLEEKT-GGKIIFR 68 (356)
Q Consensus 11 pvV~IGK~GVTd~VVeeIh~awk~-rELVKVK~l~~~~~dmk~iae~Le~kT-Gg~VVqr 68 (356)
..|.||+.|+..-+...+. .+.. ..=|.||-.+..-...-.+|++|.++. .|.-|+.
T Consensus 4 n~I~V~~k~v~~yV~~~~~-~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~ 62 (89)
T 1nfj_A 4 HVVYVGNKPVMNYVLATLT-QLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKE 62 (89)
T ss_dssp EEEECCSSCHHHHHHHHHH-HHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred CEEEEcCCCHHHHHHHHHH-HHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 4689999997765655555 4554 788999999988888889999999999 5655453
Done!