BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018445
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZH8|A Chain A, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
pdb|1ZH8|B Chain B, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 12/179 (6%)
Query: 92 KLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKL 151
K L+ G HVI EKP + ++ + + + + ++ +AEN+R PAF + K+L
Sbjct: 101 KALRKGVHVICEKPISTDVETGKKVVE-----LSEKSEKTVY-IAENFRHVPAFWKAKEL 154
Query: 152 I--AEIGDMMSVQVIVEGXXXXXXXXXXXXWRRN--FTGGFILDMGVHFIAGLRMITGCE 207
+ IGD + + WR+ GGF+ D GVH A R+I G E
Sbjct: 155 VESGAIGDPVFXNWQIWVGXDENNKYVHTDWRKKPKHVGGFLSDGGVHHAAAXRLILG-E 213
Query: 208 VVSVSAITSHIDKTLPPPDNISSNFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQV 266
+ +SA+ + L D +SS F+ ENG G + + S + + F + G KG + +
Sbjct: 214 IEWISAVAKDLSPLLGGXDFLSSIFEFENGTVGNYTISYSLKGNERF-EITGTKGKISI 271
>pdb|3E18|A Chain A, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
pdb|3E18|B Chain B, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
Length = 359
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 30/209 (14%)
Query: 66 EQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKP---AAANISEIENALSRYNS 122
E ++ ++ + + ++ L+AGKHV+ EKP + ++ I + R N
Sbjct: 58 EAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNK 117
Query: 123 ICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXXXXXXXXXXXW 180
+ V +N R++ F+ K++ + IG+M ++ V G W
Sbjct: 118 H---------FMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD-----W 163
Query: 181 R--RNFTGGFILDMGVHFIAGLRMITGCEVVSVSAITSHIDKTLPPPDNISSNF----QL 234
R + GG +LD GVH + L + V SVSA + + D + F
Sbjct: 164 RHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSA-----NLSFALGDEVDDGFVTFITF 218
Query: 235 ENGCSGVFVMVVSSRSPKIFWRVVGMKGT 263
ENG + + ++ W V G +GT
Sbjct: 219 ENGITAQIEVGTTNFIKLPRWYVKGTEGT 247
>pdb|3GFG|A Chain A, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|B Chain B, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|C Chain C, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|D Chain D, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|E Chain E, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|F Chain F, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|G Chain G, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|H Chain H, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|I Chain I, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|J Chain J, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|K Chain K, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|L Chain L, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
Length = 367
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 53 FADVECVWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISE 112
F D E V + LE+I + +I + ++ ++AGKHV+ EKP A E
Sbjct: 57 FPDAEVV---HELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEE 113
Query: 113 IENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXX 170
E L R D G + +V N R++ F+ KKLI+E + D+ + QV
Sbjct: 114 GET-LKR----AADEKG-VLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQV----SYN 163
Query: 171 XXXXXXXXXWRRN--FTGGFILDMGVHFI 197
WR G + D+G H I
Sbjct: 164 RYRPEVQARWREKEGTATGTLYDLGSHII 192
>pdb|3GDO|A Chain A, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
pdb|3GDO|B Chain B, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
Length = 358
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 53 FADVECVWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISE 112
F D E V + LE+I + +I + ++ ++AGKHV+ EKP A E
Sbjct: 48 FPDAEVV---HELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEE 104
Query: 113 IENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXX 170
E L R D G + +V N R++ F+ KKLI+E + D+ + QV
Sbjct: 105 GET-LKR----AADEKG-VLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQV----SYN 154
Query: 171 XXXXXXXXXWRRN--FTGGFILDMGVHFI 197
WR G + D+G H I
Sbjct: 155 RYRPEVQARWREKEGTATGTLYDLGSHII 183
>pdb|3IP3|A Chain A, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|B Chain B, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|C Chain C, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|D Chain D, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|E Chain E, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|F Chain F, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|G Chain G, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|H Chain H, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 91 LKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKK 150
L+ L+ H EKP A ++E S Y + + + R+ P F+ KK
Sbjct: 85 LEALERKIHAFVEKPIATTFEDLEKIRSVYQKV----RNEVFFTAXFGIRYRPHFLTAKK 140
Query: 151 LIAEIGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCEVVS 210
L++E G + ++++ +R GG I +G+H I + ITG + +S
Sbjct: 141 LVSE-GAVGEIRLVNTQKSYKLGQRPDFYKKRETYGGTIPWVGIHAIDWIHWITGKKFLS 199
Query: 211 VSAITSHI 218
V A S +
Sbjct: 200 VYATHSRL 207
>pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYD|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYE|A Chain A, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|B Chain B, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|C Chain C, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|D Chain D, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
Length = 387
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 19/295 (6%)
Query: 55 DVECVWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIE 114
D ++ + ++I K+ I + +++ KAGKHV+ EKP A ++++ +
Sbjct: 86 DPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQ 145
Query: 115 NALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXXXX 172
+ + + ++P KLI E +G + V
Sbjct: 146 RMIDAAKA------ANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQN 199
Query: 173 XXXXXXXWRRNFT-GGFILDMGVHFIAGLRMITGCEVVSVSAIT---SHIDKTLPPPDNI 228
RR GG ++D+G++ + G R + G E + V A T + ++ + D I
Sbjct: 200 DPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRI 259
Query: 229 SSNFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQDGRHGYLVTQYGADGQS 288
+ +G S+ + F V G K L ++ G + L++ +
Sbjct: 260 IWQMRFRSGALSHGASSYSTTTTSRF-SVQGDKAVLLMDPAT--GYYQNLISVQTPGHAN 316
Query: 289 KSMFYPF-SGVTEELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLES 342
+SM F + A + ++EA IN+ P RS EG +DV L++A+ E+
Sbjct: 317 QSMMPQFIMPANNQFSAQLDHLAEAV--INNKPV-RSPGEEGMQDVRLIQAIYEA 368
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 19/295 (6%)
Query: 55 DVECVWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIE 114
D ++ + ++I K+ I + +++ KAGKHV+ EKP A ++++ +
Sbjct: 80 DPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQ 139
Query: 115 NALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXXXX 172
+ + + ++P KLI E +G + V
Sbjct: 140 RMIDAAKA------ANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQN 193
Query: 173 XXXXXXXWRRNFT-GGFILDMGVHFIAGLRMITGCEVVSVSAIT---SHIDKTLPPPDNI 228
RR GG ++D+G++ + G R + G E + V A T + ++ + D I
Sbjct: 194 DPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRI 253
Query: 229 SSNFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQDGRHGYLVTQYGADGQS 288
+ +G S+ + F V G K L ++ G + L++ +
Sbjct: 254 IWQMRFRSGALSHGASSYSTTTTSRF-SVQGDKAVLLMDPAT--GYYQNLISVQTPGHAN 310
Query: 289 KSMFYPF-SGVTEELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLES 342
+SM F + A + ++EA IN+ P RS EG +DV L++A+ E+
Sbjct: 311 QSMMPQFIMPANNQFSAQLDHLAEAV--INNKPV-RSPGEEGMQDVRLIQAIYEA 362
>pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|D Chain D, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
Length = 352
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 19/295 (6%)
Query: 55 DVECVWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIE 114
D ++ + ++I K+ I + +++ KAGKHV+ EKP A ++++ +
Sbjct: 51 DPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQ 110
Query: 115 NALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXXXX 172
+ + + ++P KLI E +G + V
Sbjct: 111 RMIDAAKA------ANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQN 164
Query: 173 XXXXXXXWRRNFT-GGFILDMGVHFIAGLRMITGCEVVSVSAIT---SHIDKTLPPPDNI 228
RR GG ++D+G++ + G R + G E + V A T + ++ + D I
Sbjct: 165 DPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRI 224
Query: 229 SSNFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQDGRHGYLVTQYGADGQS 288
+ +G S+ + F V G K L ++ G + L++ +
Sbjct: 225 IWQMRFRSGALSHGASSYSTTTTSRF-SVQGDKAVLLMDPAT--GYYQNLISVQTPGHAN 281
Query: 289 KSMFYPF-SGVTEELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLES 342
+SM F + A + ++EA IN+ P RS EG +DV L++A+ E+
Sbjct: 282 QSMMPQFIMPANNQFSAQLDHLAEAV--INNKP-VRSPGEEGMQDVRLIQAIYEA 333
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
Length = 433
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 19/295 (6%)
Query: 55 DVECVWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIE 114
D ++ + ++I K+ I + +++ KAGKHV+ EKP A ++++ +
Sbjct: 132 DPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQ 191
Query: 115 NALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGXXXXX 172
+ + + ++P KLI E +G + V
Sbjct: 192 RMIDAAKA------ANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQN 245
Query: 173 XXXXXXXWRRNFT-GGFILDMGVHFIAGLRMITGCEVVSVSAIT---SHIDKTLPPPDNI 228
RR GG ++D+G++ + G R + G E + V A T + ++ + D I
Sbjct: 246 DPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRI 305
Query: 229 SSNFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQDGRHGYLVTQYGADGQS 288
+ +G S+ + F V G K L ++ G + L++ +
Sbjct: 306 IWQMRFRSGALSHGASSYSTTTTSRF-SVQGDKAVLLMDPAT--GYYQNLISVQTPGHAN 362
Query: 289 KSMFYPF-SGVTEELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLES 342
+SM F + A + ++EA IN+ P RS EG +DV L++A+ E+
Sbjct: 363 QSMMPQFIMPANNQFSAQLDHLAEAV--INNKPV-RSPGEEGMQDVRLIQAIYEA 414
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 186 GGFILDMGVHFIAGLRMITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENGCSGVFV 243
GG I + H I ++ ITG + +V A+T +D P N ++ LE+G V V
Sbjct: 172 GGIIYNQLPHQIDSIKTITGQRITAVRAMTGRLDPKRPTEGNCAAMLTLEDGACAVMV 229
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 94 LKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIA 153
L AGKHV+ +KP +S+ NAL + D G + +V N R++ F+ K L+A
Sbjct: 88 LAAGKHVVVDKPFTVTLSQ-ANALKEHA----DDAGL-LLSVFHNRRWDSDFLTLKTLLA 141
Query: 154 EIGDMMSVQVIVEGXXXXXXXXXXXXWRRN--FTGGFILDMGVHFI 197
E G + +V V E WR GG D+G H +
Sbjct: 142 E-GSLGNV-VYFESHFDRYRPEIRQRWREQAGAGGGIWYDLGPHLL 185
>pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp
pdb|3RC1|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp And
Tdp-Benzene
pdb|3RC2|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata In Complex With Tdp-Benzene And
Nadp; Open Conformation
Length = 350
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 92 KLLKAGKHVIQEKPAAANISEIEN--ALSRYNSICPDPPGQPIWAVAENYRF--EPAFVE 147
+ L+AGKHV+ EKP + + E A++R + + EN+ F P +
Sbjct: 108 RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLL----------LMENFMFLHHPQHRQ 157
Query: 148 CKKLIAEIGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCE 207
++ E G + ++ ++ + GG +LD+GV+ I + G +
Sbjct: 158 VADMLDE-GVIGEIRSFAASFTIPPKPQGDIRYQADVGGGALLDIGVYPIRAAGLFLGAD 216
Query: 208 VVSVSAITSH 217
+ V A+ H
Sbjct: 217 LEFVGAVLRH 226
>pdb|4HKT|A Chain A, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|B Chain B, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|C Chain C, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|D Chain D, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
Length = 331
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 15/181 (8%)
Query: 92 KLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKL 151
+ +AGK + EKP + + L + D + V N RF+P F +K
Sbjct: 82 RFARAGKAIFCEKPIDLDAERVRACLK----VVSDTKAK--LXVGFNRRFDPHFXAVRKA 135
Query: 152 IAEIGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCEVVSV 211
I + G + V+ + R +GG D +H R + G E VSV
Sbjct: 136 IDD-GRIGEVEXVTITSRDPSAPPVDYIKR---SGGIFRDXTIHDFDXARFLLGEEPVSV 191
Query: 212 SAITS-HIDKTLPPPDNISSNFQLENGCSGVFVMVVSSRSPKIFW----RVVGMKGTLQV 266
+A + IDK + + S + SG ++ +SR + V G KG +
Sbjct: 192 TATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISNSRRATYGYDQRIEVHGSKGAVAA 251
Query: 267 E 267
E
Sbjct: 252 E 252
>pdb|4EW6|A Chain A, Crystal Structure Of D-Galactose-1-Dehydrogenase Protein
From Rhizobium Etli
Length = 330
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWXXXXXXXXXXXXXXXXHFADVECVWGDNG 64
+AI+G G V+ Q++P +A+ ++ K + VE V
Sbjct: 28 LAIVGVGKIVRDQHLPSIAKNANF---KLV-------------ATASRHGTVEGVNSYTT 71
Query: 65 LEQIIK-EDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123
+E + E SI + + K L AGKHV EKP A +SE+ + + N
Sbjct: 72 IEAXLDAEPSIDAVSLCXPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANK- 130
Query: 124 CPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMSVQVI 164
G ++A + + R+ PA K +A + SV VI
Sbjct: 131 ----QGASLFA-SWHSRYAPAVEAAKAFLAST-TIKSVHVI 165
>pdb|4HAD|A Chain A, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|B Chain B, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|C Chain C, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|D Chain D, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
Length = 350
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 90 SLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECK 149
S+K AGKHV+ EKP A +I+ ++ + + + A + P + + +
Sbjct: 103 SIKAADAGKHVVCEKPLALKAGDIDAVIAARDR------NKVVVTEAYXITYSPVWQKVR 156
Query: 150 KLIAE--IGDMMSVQVIVEGXXXXXXXXXXXXWRRN---FTGGFILDMGVHFIAGLRMIT 204
LI E IG + VQ RN GG + D+GV+ + R T
Sbjct: 157 SLIDEGAIGSLRHVQ------GAFTYFNRDASNXRNIPELGGGGLPDIGVYPVXSTRFST 210
Query: 205 GCEVVSVSAIT 215
G E + + A T
Sbjct: 211 GKEPLRIQANT 221
>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|B Chain B, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|C Chain C, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|D Chain D, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
Length = 344
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 88/232 (37%), Gaps = 38/232 (16%)
Query: 95 KAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154
KA KHV EKP + N+++++ + I N RF+ F + K+ + E
Sbjct: 86 KAKKHVFCEKPLSLNLADVDRMIEETKK------ADVILFTGFNRRFDRNFKKLKEAV-E 138
Query: 155 IGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCEVVSVSAI 214
G + V+ + R +GG LDM +H R I G EV V A
Sbjct: 139 NGTIGKPHVL--RITSRDPAPPPLDYIR-VSGGIFLDMTIHDFDMARYIMGEEVEEVFAD 195
Query: 215 TS-HIDKTLPPPDNISSNFQLENGCSGVFVMVVSSRSPKIFW----RVVGMKG------- 262
S +D+ + ++ + + SG ++ +SR + V G KG
Sbjct: 196 GSVLVDEEIGKAGDVDTAVVVLRFKSGALGVIDNSRRAVYGYDQRIEVFGSKGRIFADNV 255
Query: 263 -----TLQVERGNQDGRHGYLVTQYGADGQSKSMFYPFSGVTEELKAFIHDI 309
L E+G++ R+ Y + D EELK FI ++
Sbjct: 256 RETTVVLTDEQGDRGSRYLYFFLERYRD-----------SYLEELKTFIKNV 296
>pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 92 KLLKAGKHVIQEKPAAANISEIEN--ALSRYNSICPDPPGQPIWAVAENYRF--EPAFVE 147
+ L+AGKHV+ EKP + + E A++R + + EN+ F P +
Sbjct: 108 RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLL----------LMENFMFLHHPQHRQ 157
Query: 148 CKKLIAEIGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCE 207
++ E G + ++ ++ + GG +LD+GV I + G +
Sbjct: 158 VADMLDE-GVIGEIRSFAASFTIPPKPQGDIRYQADVGGGALLDIGVFPIRAAGLFLGAD 216
Query: 208 VVSVSAITSH 217
+ V A+ H
Sbjct: 217 LEFVGAVLRH 226
>pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 92 KLLKAGKHVIQEKPAAANISEIEN--ALSRYNSICPDPPGQPIWAVAENYRF--EPAFVE 147
+ L+AGKHV+ E+P + + E A++R + + EN+ F P +
Sbjct: 108 RALRAGKHVLAEEPLTTDRPQAERLFAVARERGLL----------LMENFMFLHHPQHRQ 157
Query: 148 CKKLIAEIGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCE 207
++ E G + ++ ++ + GG +LD+GV+ I + G +
Sbjct: 158 VADMLDE-GVIGEIRSFAASFTIPPKPQGDIRYQADVGGGALLDIGVYPIRAAGLFLGAD 216
Query: 208 VVSVSAITSH 217
+ V A+ H
Sbjct: 217 LEFVGAVLRH 226
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 90 SLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECK 149
++++ +AG+HV+ EKP A + + R C D G ++ V +N R A ++
Sbjct: 109 AIEVAQAGRHVVSEKPMATRWEDGK----RMVKAC-DEAGVRLFVVKQNRR--NATLQLV 161
Query: 150 KLIAEIGDMMSVQVIVEGX--XXXXXXXXXXXWRRN--FTGGFILDMGVHFIAGLRMITG 205
K E G + ++ WR + GG ++ H++ L + G
Sbjct: 162 KKAIEQGRFGRIYMVTVNVFWTRPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVG 221
Query: 206 CEVVSVSAITSHIDKTLPPPDNISSNFQLENGCSGVF--VMVVSSRSPKIFWRVVGMKGT 263
V SV A T+ + + + D + + +G G M+ ++ + ++G KGT
Sbjct: 222 -PVESVYAYTATLARRIEAEDTGVAALRWRHGAMGSINVTMLTYPQNLEGSITILGEKGT 280
Query: 264 LQV 266
++V
Sbjct: 281 VRV 283
>pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 92 KLLKAGKHVIQEKPAAANISEIEN--ALSRYNSICPDPPGQPIWAVAENYRF--EPAFVE 147
+ L+AGKHV+ E P + + E A++R + + EN+ F P +
Sbjct: 108 RALRAGKHVLAEAPLTTDRPQAERLFAVARERGLL----------LMENFMFLHHPQHRQ 157
Query: 148 CKKLIAEIGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCE 207
++ E G + ++ ++ + GG +LD+GV+ I + G +
Sbjct: 158 VADMLDE-GVIGEIRSFAASFTIPPKPQGDIRYQADVGGGALLDIGVYPIRAAGLFLGAD 216
Query: 208 VVSVSAITSH 217
+ V A+ H
Sbjct: 217 LEFVGAVLRH 226
>pdb|2HO5|A Chain A, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
pdb|2HO5|B Chain B, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
Length = 325
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 94 LKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIA 153
L AGKHVI EKPA + E + + + I+ A NY E AF K +A
Sbjct: 83 LSAGKHVILEKPAVSQPQEWFDLIQ-----TAEKNNCFIFEAARNYH-EKAFTTIKNFLA 136
Query: 154 E---IGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVH-FIAGLRMI 203
+ +G + + F GG + D+G++ A +R+
Sbjct: 137 DKQVLGADFNYAKYSSKXPDLLAGQTPNVFSDRFAGGALXDLGIYPLYAAVRLF 190
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 59 VWGDNG----LEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAAN--ISE 112
VW +G IKE+S DT++K +K G + EKP + +
Sbjct: 52 VWXPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLT 111
Query: 113 IENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIG 156
I++A Y+ PP + I V E+ P +E K+LI +I
Sbjct: 112 IKHAFEEYSKKA--PPQEEIEFVGEH----PKILEIKRLIPKIA 149
>pdb|2O48|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase
pdb|2O4U|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase
pdb|2POQ|X Chain X, Dimeric Dihydrodiol Dehydrogenase Complexed With
Inhibitor, Isoascorbic Acid
pdb|3OHS|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol
Dehydrogenase In Complex With Dihydroxyacetone
Length = 334
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 94 LKAGKHVIQEKPAAANISEIENALSRYNSICPDPPG----QPIWAVAENYRFEPAFVECK 149
L AGK V+ EKP N +E+ ++ S G + IW RF PA +
Sbjct: 87 LAAGKAVLCEKPMGVNAAEVREMVTEARS-----RGLFLMEAIWT-----RFFPASEALR 136
Query: 150 KLIAE--IGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITG 205
++A+ +GD+ + E W + GG +LD+G++ + + M+ G
Sbjct: 137 SVLAQGTLGDLRVAR--AEFGKNLTHVPRAVDWAQ--AGGALLDLGIYCVQFISMVFG 190
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
pdb|4GMK|B Chain B, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
Length = 228
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 216 SHIDKTLPPPDNISSNFQ--LENGCSGVFVMVVSSRSPKIFWRV 257
HID T+ D ISS+FQ G + ++ +V+++S K W V
Sbjct: 78 DHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIV 121
>pdb|4FB5|A Chain A, Crystal Structure Of A Probable Oxidoreduxtase Protein
pdb|4FB5|B Chain B, Crystal Structure Of A Probable Oxidoreduxtase Protein
Length = 393
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 97 GKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE-- 154
GKHV EKP A ++ E L+ + G+ + A+ NY P +KL+ +
Sbjct: 118 GKHVWCEKPXAPAYADAERXLA-----TAERSGK-VAALGYNYIQNPVXRHIRKLVGDGV 171
Query: 155 IGDMMSVQVIVEGXXXXXXXXXXXXWRRNFTGGF--ILDMGVHFIAGLRMITG-CEVVSV 211
IG + V+V + W+ + G+ + D VH ++ L + G E V
Sbjct: 172 IGRVNHVRVEXD-EDFXADPDIFFYWKSELSAGYGALDDFAVHPLSLLWYLFGHVEAVIT 230
Query: 212 SAITSHIDKTLPP--------PDNISSNFQLENGCSGVFVMVVSS--RSPKIFWRVVGMK 261
+ + D+ L D + +L+ G S V ++ R +I ++ G K
Sbjct: 231 DXVKPYPDRPLSEGGRRAVENHDAANVLXRLDGGISAVLXANRAAWGRKGRIALQIYGSK 290
Query: 262 GTL--QVERGNQ 271
G++ ER N+
Sbjct: 291 GSILYDQERXNE 302
>pdb|3F4L|A Chain A, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|B Chain B, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|C Chain C, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|D Chain D, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|E Chain E, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|F Chain F, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
Length = 345
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 65 LEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIEN--ALSRYNS 122
L++++ + + + + + L+AGK+V+ EKP +++ + AL++
Sbjct: 57 LDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKG 116
Query: 123 ICPDPPGQPIWAVAENYRFEPAFVECKKLI--AEIGDMMSVQ 162
+ P +N RF+ F+ KK I ++G+++ V+
Sbjct: 117 LTVTP--------YQNRRFDSCFLTAKKAIESGKLGEIVEVE 150
>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
Length = 353
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 59 VWGDNGLEQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIEN--A 116
V+ L++++ + I + + K++ AGK VI EKP + + A
Sbjct: 51 VYFTTDLDELLNDKEIQVVTICTPAHTHYELAKKVILAGKSVIVEKPFCDTVEHAKELLA 110
Query: 117 LSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQ 162
L R + P +N RF+ F+ K+++ + +GD++ ++
Sbjct: 111 LGREKGVVVMP--------YQNRRFDGDFLAVKQVVEQGFLGDIIEIE 150
>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
Length = 390
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 100/288 (34%), Gaps = 41/288 (14%)
Query: 97 GKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE-- 154
GKHV+ EKP A ++E E + G V YR PA +KL+A+
Sbjct: 99 GKHVLCEKPLANTVAEAEAXAAAAAKAA---AGGIRSXVGFTYRRVPAIALARKLVADGK 155
Query: 155 IGDMMSV--QVIVEGXXXXXXXXXXXXWRRNFTGGFILDMGVHFIAGLRMITGCEVVSVS 212
IG + V Q + + + G + D+G H + + ITG + VS
Sbjct: 156 IGTVRHVRAQYLQDWIADPEAPLSWRLDKDKAGSGALGDIGAHIVDLTQFITGDRIAEVS 215
Query: 213 AITSHIDKTLPPPD---NISSNFQLEN-----------------GCSGVF--VMVVSSRS 250
K P P+ +S E G GVF + R
Sbjct: 216 GRLETFVKERPKPEAHSGLSGTASAERGPVTVDDAAVFLATFRGGALGVFEATRFATGRK 275
Query: 251 PKIFWRVVGMKGTLQVERGNQDGRHGYLVTQYGADGQSKSM------------FYPFSGV 298
I + G KG+L + + + H Y T+ + + ++P +
Sbjct: 276 NAIRIEINGSKGSLAFDFEDXNLLHFYDATEDPETAGFRRILATEPVHPYVAGWWPPGHL 335
Query: 299 TEELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLESGSKQ 346
F H + + I +P SF +G + +L A+ S + +
Sbjct: 336 LGYEHGFTHQVVDLVTAIAEGKDPEPSFADGLQVQRVLAAVETSSTSR 383
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 90 SLKLLKAGKHVIQEKPAAANISEIE 114
++K + GKH++ EKP A N++E +
Sbjct: 88 AIKAAEKGKHILLEKPVAXNVTEFD 112
>pdb|3UZQ|B Chain B, Crystal Structure Of The Dengue Virus Serotype 1 Envelope
Protein Domain Iii In Complex With The Variable Domains
Of Mab 4e11
Length = 114
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 262 GTLQVERGNQDGRHGYLVTQYGADGQSKSMFYPFS-----GVTEELKAFIHD--ISEAKK 314
G+ ++E+ + +HG ++ Q +G PFS GVT+ + + +++ +K
Sbjct: 10 GSFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSTQDEKGVTQNGRLITANPIVTDKEK 69
Query: 315 GINHVPEP---RSSFLEGARDVALLEAMLESGSKQGAL 349
+N EP S + GA + AL + + GS G L
Sbjct: 70 PVNIETEPPFGESYIIVGAGEKALKLSWFKKGSSIGKL 107
>pdb|3U3X|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|G Chain G, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|J Chain J, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|M Chain M, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 361
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 26/237 (10%)
Query: 66 EQIIKEDSIXXXXXXXXXXXXXDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICP 125
E+I+++++I + +++ + GK V+ +KP + ++ L R +
Sbjct: 81 EEILEDENIGLIVSAAVSSERAELAIRAXQHGKDVLVDKPGXTSFDQLAK-LRRVQA--- 136
Query: 126 DPPGQPIWAVAENYRFE-PAFVECKKLIAEIGDMMSVQVIVEGXXXXXXXXXXXXW--RR 182
G+ I+++ + FE PA V+ +L+A G + V IV W RR
Sbjct: 137 -ETGR-IFSILYSEHFESPATVKAGELVA-AGAIGEVVHIVGLGPHRLRRETRPDWFFRR 193
Query: 183 NFTGGFILDMGVHFIAGLRMITGCEVVSV-SAITSHIDKTLPPPDNISSNFQLENGCSGV 241
GG + D+ H TG +V SA + P + + L G +
Sbjct: 194 ADYGGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTG 253
Query: 242 FVMV---VSSRSP-----KIFWRVVGMKGTLQVER-----GNQDGRHGYLVTQYGAD 285
+ V P ++F +VG GT++V + G + G H +L + G +
Sbjct: 254 XIHVNWLTPEGXPTWGDGRLF--IVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVE 308
>pdb|1EX5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 93 LLKAGKHVIQEKPAAANISEIENALSRYNSIC 124
+LK G+H P+A I E N L+RY SIC
Sbjct: 150 VLKIGEHT----PSALAIMENANVLARYASIC 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,200,717
Number of Sequences: 62578
Number of extensions: 333505
Number of successful extensions: 714
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 40
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)