Query 018445
Match_columns 355
No_of_seqs 147 out of 1403
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11579 putative oxidoreducta 100.0 6.7E-57 1.4E-61 413.8 35.8 320 2-352 4-345 (346)
2 COG0673 MviM Predicted dehydro 100.0 1.6E-55 3.4E-60 405.8 33.4 330 1-353 2-341 (342)
3 PRK10206 putative oxidoreducta 100.0 7.7E-54 1.7E-58 391.6 35.5 322 2-353 1-343 (344)
4 KOG2741 Dimeric dihydrodiol de 100.0 9.3E-47 2E-51 327.0 29.7 325 1-347 5-344 (351)
5 KOG2742 Predicted oxidoreducta 100.0 2.9E-33 6.2E-38 240.7 14.2 331 1-355 1-349 (367)
6 TIGR01761 thiaz-red thiazoliny 100.0 5.7E-29 1.2E-33 224.2 24.3 221 2-271 3-240 (343)
7 PF01408 GFO_IDH_MocA: Oxidore 100.0 9.9E-30 2.1E-34 198.1 11.8 120 3-137 1-120 (120)
8 PRK13302 putative L-aspartate 99.9 1.9E-21 4.1E-26 171.4 14.1 224 2-270 6-240 (271)
9 PRK13303 L-aspartate dehydroge 99.8 2.4E-20 5.3E-25 164.1 12.5 227 3-270 2-235 (265)
10 TIGR03215 ac_ald_DH_ac acetald 99.8 1.2E-19 2.7E-24 159.0 11.0 137 2-159 1-147 (285)
11 TIGR03855 NAD_NadX aspartate d 99.8 2.3E-18 5E-23 146.9 14.3 117 29-166 2-121 (229)
12 PRK13304 L-aspartate dehydroge 99.8 3.9E-18 8.5E-23 150.3 14.1 141 3-166 2-145 (265)
13 PRK06270 homoserine dehydrogen 99.8 3E-18 6.4E-23 156.3 13.3 151 1-166 1-180 (341)
14 PRK08300 acetaldehyde dehydrog 99.8 1.7E-18 3.6E-23 152.1 9.9 136 2-159 4-153 (302)
15 PRK06349 homoserine dehydrogen 99.8 1.1E-18 2.3E-23 163.7 8.5 147 2-166 3-159 (426)
16 PLN02819 lysine-ketoglutarate 99.8 1.3E-17 2.7E-22 168.2 16.0 147 4-167 571-737 (1042)
17 PRK00048 dihydrodipicolinate r 99.7 2.3E-17 4.9E-22 144.8 10.2 141 2-163 1-142 (257)
18 PRK05447 1-deoxy-D-xylulose 5- 99.7 6.1E-16 1.3E-20 139.7 17.5 210 4-238 3-254 (385)
19 TIGR01921 DAP-DH diaminopimela 99.7 4.7E-16 1E-20 138.1 12.6 185 2-217 3-195 (324)
20 TIGR00036 dapB dihydrodipicoli 99.7 3.7E-16 8.1E-21 137.6 9.8 135 3-153 2-139 (266)
21 PRK05472 redox-sensing transcr 99.3 1.4E-12 3E-17 111.5 4.1 101 3-112 85-186 (213)
22 PF02894 GFO_IDH_MocA_C: Oxido 99.3 1.8E-11 4E-16 93.8 9.0 99 149-249 1-107 (115)
23 PRK08374 homoserine dehydrogen 99.1 6.7E-10 1.5E-14 101.1 12.2 154 1-167 1-178 (336)
24 COG1712 Predicted dinucleotide 99.1 1.4E-09 3E-14 89.8 12.5 140 3-165 1-143 (255)
25 PRK13301 putative L-aspartate 99.1 4E-09 8.7E-14 90.8 14.0 141 1-165 1-145 (267)
26 PRK04207 glyceraldehyde-3-phos 99.0 2.5E-09 5.4E-14 97.6 8.9 98 2-106 1-111 (341)
27 PRK08618 ornithine cyclodeamin 99.0 7.1E-10 1.5E-14 100.9 5.3 127 3-144 128-268 (325)
28 PRK00436 argC N-acetyl-gamma-g 99.0 8.8E-10 1.9E-14 100.9 5.7 97 1-104 1-99 (343)
29 PF08635 ox_reductase_C: Putat 98.9 1.8E-08 4E-13 75.3 10.7 119 140-260 1-140 (142)
30 COG1748 LYS9 Saccharopine dehy 98.8 7.7E-08 1.7E-12 87.9 14.0 146 3-167 2-154 (389)
31 PRK07634 pyrroline-5-carboxyla 98.8 1.3E-07 2.9E-12 82.7 13.3 144 2-162 4-163 (245)
32 COG4693 PchG Oxidoreductase (N 98.7 2.6E-07 5.7E-12 78.6 13.3 162 4-206 6-172 (361)
33 PF01113 DapB_N: Dihydrodipico 98.7 1.1E-08 2.4E-13 79.4 4.2 112 3-122 1-115 (124)
34 PRK06476 pyrroline-5-carboxyla 98.7 1.3E-07 2.9E-12 83.4 11.3 135 3-161 1-149 (258)
35 PF03807 F420_oxidored: NADP o 98.7 5.3E-08 1.1E-12 72.1 7.4 88 4-101 1-91 (96)
36 PF03447 NAD_binding_3: Homose 98.7 1.3E-08 2.7E-13 78.5 3.1 112 9-135 1-116 (117)
37 TIGR01546 GAPDH-II_archae glyc 98.6 1.1E-07 2.3E-12 85.6 7.5 97 5-106 1-109 (333)
38 COG0460 ThrA Homoserine dehydr 98.6 4E-07 8.8E-12 81.2 10.8 148 1-167 2-169 (333)
39 COG4091 Predicted homoserine d 98.6 2E-07 4.4E-12 82.0 8.6 140 2-157 17-178 (438)
40 PRK06046 alanine dehydrogenase 98.6 9.5E-08 2.1E-12 87.0 6.8 91 3-102 130-221 (326)
41 smart00859 Semialdhyde_dh Semi 98.6 9.3E-08 2E-12 74.2 5.6 91 4-101 1-96 (122)
42 PF03435 Saccharop_dh: Sacchar 98.5 9.3E-07 2E-11 82.8 12.3 148 5-167 1-156 (386)
43 PF10727 Rossmann-like: Rossma 98.5 2.6E-07 5.6E-12 71.5 5.7 82 2-96 10-91 (127)
44 PRK11880 pyrroline-5-carboxyla 98.5 2.3E-06 5E-11 76.0 12.5 102 1-114 1-103 (267)
45 TIGR01850 argC N-acetyl-gamma- 98.4 3E-07 6.4E-12 84.4 6.1 92 3-102 1-97 (346)
46 PRK06392 homoserine dehydrogen 98.4 3.8E-06 8.3E-11 76.0 13.0 150 3-167 1-172 (326)
47 PRK11559 garR tartronate semia 98.4 1.8E-06 3.8E-11 77.9 10.2 105 1-122 1-112 (296)
48 PRK06813 homoserine dehydrogen 98.4 2.7E-06 5.9E-11 77.4 11.3 156 1-167 1-178 (346)
49 PF01118 Semialdhyde_dh: Semia 98.4 4E-07 8.6E-12 70.5 4.9 91 4-101 1-94 (121)
50 PRK12491 pyrroline-5-carboxyla 98.4 7.2E-06 1.6E-10 72.7 13.2 106 1-118 1-110 (272)
51 TIGR02371 ala_DH_arch alanine 98.4 6.4E-07 1.4E-11 81.5 6.6 92 3-103 129-221 (325)
52 PF03446 NAD_binding_2: NAD bi 98.4 2.6E-06 5.6E-11 69.6 9.4 113 3-137 2-119 (163)
53 PRK12490 6-phosphogluconate de 98.3 5.5E-06 1.2E-10 74.7 11.4 106 3-122 1-110 (299)
54 TIGR01532 E4PD_g-proteo D-eryt 98.3 2.1E-06 4.4E-11 77.6 8.5 105 4-109 1-126 (325)
55 PRK06928 pyrroline-5-carboxyla 98.3 6.6E-06 1.4E-10 73.3 11.7 104 3-117 2-110 (277)
56 PLN02696 1-deoxy-D-xylulose-5- 98.3 5.7E-05 1.2E-09 70.2 17.3 210 3-238 58-312 (454)
57 cd01065 NAD_bind_Shikimate_DH 98.2 2.3E-06 5E-11 69.3 6.0 126 3-147 20-149 (155)
58 TIGR00872 gnd_rel 6-phosphoglu 98.2 1.3E-05 2.9E-10 72.2 10.6 105 3-122 1-109 (298)
59 PRK07680 late competence prote 98.2 3.5E-05 7.7E-10 68.6 13.2 103 3-116 1-107 (273)
60 COG3804 Uncharacterized conser 98.2 1E-05 2.2E-10 69.3 8.6 116 1-123 1-122 (350)
61 PRK07340 ornithine cyclodeamin 98.2 2.6E-06 5.7E-11 76.7 5.2 91 3-103 126-216 (304)
62 PF02670 DXP_reductoisom: 1-de 98.2 1.8E-05 3.8E-10 61.1 9.0 97 5-102 1-119 (129)
63 PRK08291 ectoine utilization p 98.1 2.6E-06 5.6E-11 77.9 5.1 104 3-117 133-237 (330)
64 COG0289 DapB Dihydrodipicolina 98.1 0.00052 1.1E-08 59.1 18.2 146 1-164 1-155 (266)
65 PF02629 CoA_binding: CoA bind 98.1 9.4E-07 2E-11 65.3 1.2 89 2-102 3-92 (96)
66 PRK09436 thrA bifunctional asp 98.1 5E-05 1.1E-09 77.4 13.9 156 1-167 464-638 (819)
67 PRK07679 pyrroline-5-carboxyla 98.1 7.1E-05 1.5E-09 66.9 12.9 103 3-117 4-111 (279)
68 PRK09599 6-phosphogluconate de 98.1 4.3E-05 9.2E-10 69.1 11.3 107 3-123 1-111 (301)
69 COG2344 AT-rich DNA-binding pr 98.1 5.6E-06 1.2E-10 66.7 4.6 94 3-105 85-179 (211)
70 PRK09466 metL bifunctional asp 98.1 0.00011 2.3E-09 74.6 14.8 156 1-167 457-632 (810)
71 PRK15461 NADH-dependent gamma- 98.0 4.4E-05 9.5E-10 68.8 10.8 103 4-123 3-112 (296)
72 COG0743 Dxr 1-deoxy-D-xylulose 98.0 0.00023 5E-09 63.7 14.9 211 3-238 2-252 (385)
73 TIGR00871 zwf glucose-6-phosph 98.0 1.2E-05 2.7E-10 76.1 7.4 50 74-123 110-165 (482)
74 PLN02688 pyrroline-5-carboxyla 98.0 7.7E-05 1.7E-09 66.2 11.9 79 3-93 1-81 (266)
75 TIGR00243 Dxr 1-deoxy-D-xylulo 98.0 0.00046 1E-08 62.9 16.8 210 4-238 3-257 (389)
76 COG0345 ProC Pyrroline-5-carbo 98.0 0.00015 3.3E-09 63.3 13.2 140 3-162 2-158 (266)
77 COG2084 MmsB 3-hydroxyisobutyr 98.0 5.4E-05 1.2E-09 66.7 10.5 114 3-138 1-121 (286)
78 TIGR02992 ectoine_eutC ectoine 98.0 1.5E-05 3.2E-10 72.7 6.9 93 3-102 130-222 (326)
79 PLN02700 homoserine dehydrogen 98.0 0.00015 3.4E-09 66.4 13.0 158 1-168 2-197 (377)
80 TIGR01505 tartro_sem_red 2-hyd 97.9 5.7E-05 1.2E-09 67.9 9.6 102 4-122 1-109 (291)
81 PRK15059 tartronate semialdehy 97.8 9.6E-05 2.1E-09 66.3 9.4 103 3-123 1-110 (292)
82 TIGR00978 asd_EA aspartate-sem 97.8 2.4E-05 5.2E-10 71.9 5.4 97 3-102 1-102 (341)
83 PRK06141 ornithine cyclodeamin 97.8 3.5E-05 7.7E-10 69.9 6.4 93 3-103 126-218 (314)
84 PF03721 UDPG_MGDP_dh_N: UDP-g 97.8 7.1E-05 1.5E-09 62.3 7.6 111 3-122 1-140 (185)
85 PLN02358 glyceraldehyde-3-phos 97.8 6.9E-05 1.5E-09 68.0 7.9 102 2-105 5-128 (338)
86 PRK07502 cyclohexadienyl dehyd 97.8 0.00018 3.9E-09 65.2 10.4 81 3-94 7-87 (307)
87 PLN02350 phosphogluconate dehy 97.8 0.0003 6.6E-09 67.2 12.0 113 3-123 7-124 (493)
88 PF01210 NAD_Gly3P_dh_N: NAD-d 97.8 8.3E-05 1.8E-09 60.3 7.1 86 4-95 1-91 (157)
89 KOG0409 Predicted dehydrogenas 97.8 0.00022 4.8E-09 62.2 9.8 104 3-122 36-146 (327)
90 TIGR01692 HIBADH 3-hydroxyisob 97.8 0.00058 1.3E-08 61.3 12.9 101 7-123 1-107 (288)
91 PTZ00142 6-phosphogluconate de 97.7 0.00043 9.4E-09 66.0 12.0 142 4-157 3-161 (470)
92 PRK08507 prephenate dehydrogen 97.7 0.00019 4.2E-09 63.9 9.0 96 3-114 1-98 (275)
93 PRK05722 glucose-6-phosphate 1 97.7 0.00018 3.8E-09 68.6 8.8 51 73-123 117-174 (495)
94 PRK07589 ornithine cyclodeamin 97.7 9.7E-05 2.1E-09 67.5 6.8 95 3-104 130-225 (346)
95 PF02423 OCD_Mu_crystall: Orni 97.7 3.6E-05 7.8E-10 69.7 3.7 102 4-112 130-232 (313)
96 PLN02256 arogenate dehydrogena 97.7 0.00011 2.5E-09 66.0 6.8 77 2-93 36-112 (304)
97 PRK06199 ornithine cyclodeamin 97.6 0.0001 2.2E-09 68.4 6.4 96 3-102 156-257 (379)
98 PRK06407 ornithine cyclodeamin 97.6 0.00012 2.7E-09 65.8 6.6 93 3-103 118-211 (301)
99 TIGR03026 NDP-sugDHase nucleot 97.6 0.00016 3.4E-09 68.4 7.6 75 3-86 1-89 (411)
100 PRK12464 1-deoxy-D-xylulose 5- 97.6 0.0027 5.9E-08 57.9 15.1 206 8-238 2-249 (383)
101 COG0002 ArgC Acetylglutamate s 97.6 0.00019 4.2E-09 64.1 7.3 94 1-101 1-98 (349)
102 PRK06823 ornithine cyclodeamin 97.6 0.00015 3.2E-09 65.6 6.8 92 3-103 129-221 (315)
103 PRK14618 NAD(P)H-dependent gly 97.6 0.00022 4.8E-09 65.2 8.0 101 2-109 4-110 (328)
104 cd05213 NAD_bind_Glutamyl_tRNA 97.6 0.00022 4.7E-09 64.7 7.8 94 2-106 178-274 (311)
105 PRK11064 wecC UDP-N-acetyl-D-m 97.6 0.00041 9E-09 65.4 9.6 72 1-84 1-86 (415)
106 PRK08293 3-hydroxybutyryl-CoA 97.6 0.0017 3.7E-08 58.2 13.0 103 1-112 1-127 (287)
107 COG2423 Predicted ornithine cy 97.6 0.00018 3.9E-09 64.9 6.5 91 4-102 132-223 (330)
108 PF01488 Shikimate_DH: Shikima 97.5 0.00017 3.8E-09 56.8 5.6 92 4-104 14-108 (135)
109 KOG0455 Homoserine dehydrogena 97.5 0.0035 7.6E-08 53.2 13.3 152 3-167 4-178 (364)
110 PLN02712 arogenate dehydrogena 97.5 0.00067 1.4E-08 67.7 10.3 79 1-94 368-446 (667)
111 PRK15182 Vi polysaccharide bio 97.5 0.00072 1.6E-08 63.9 10.1 92 2-104 6-120 (425)
112 PTZ00431 pyrroline carboxylate 97.5 0.00031 6.7E-09 62.0 6.8 97 1-117 1-102 (260)
113 TIGR00873 gnd 6-phosphoglucona 97.5 0.0013 2.7E-08 62.9 11.3 108 4-122 1-114 (467)
114 PRK07417 arogenate dehydrogena 97.4 0.00045 9.7E-09 61.7 7.4 87 3-103 1-89 (279)
115 smart00846 Gp_dh_N Glyceraldeh 97.4 0.0011 2.4E-08 53.0 8.8 103 3-107 1-122 (149)
116 PRK00094 gpsA NAD(P)H-dependen 97.4 0.00043 9.4E-09 63.2 7.4 80 3-91 2-89 (325)
117 PLN02775 Probable dihydrodipic 97.4 0.0011 2.4E-08 58.2 9.3 134 1-153 10-148 (286)
118 PLN02858 fructose-bisphosphate 97.3 0.00092 2E-08 71.8 9.6 136 3-157 5-161 (1378)
119 PLN02858 fructose-bisphosphate 97.3 0.0011 2.4E-08 71.2 10.2 136 2-157 324-481 (1378)
120 TIGR00465 ilvC ketol-acid redu 97.3 0.00054 1.2E-08 61.9 6.8 75 3-92 4-78 (314)
121 TIGR01915 npdG NADPH-dependent 97.3 0.001 2.3E-08 57.1 8.2 98 3-108 1-106 (219)
122 PF00044 Gp_dh_N: Glyceraldehy 97.3 0.00078 1.7E-08 53.8 6.8 105 3-109 1-125 (151)
123 PRK05479 ketol-acid reductoiso 97.3 0.00077 1.7E-08 61.0 7.3 73 3-90 18-90 (330)
124 PLN02712 arogenate dehydrogena 97.3 0.0017 3.6E-08 64.9 10.2 77 2-93 52-128 (667)
125 PRK11863 N-acetyl-gamma-glutam 97.3 0.00048 1E-08 61.9 5.6 77 1-101 1-78 (313)
126 PRK12549 shikimate 5-dehydroge 97.2 0.0011 2.5E-08 59.1 7.4 77 4-86 129-205 (284)
127 PRK08655 prephenate dehydrogen 97.2 0.003 6.5E-08 60.0 10.6 87 3-103 1-90 (437)
128 COG0677 WecC UDP-N-acetyl-D-ma 97.2 0.0029 6.3E-08 57.5 9.8 108 1-119 8-145 (436)
129 PRK09260 3-hydroxybutyryl-CoA 97.2 0.0052 1.1E-07 55.1 11.4 78 4-87 3-95 (288)
130 PLN02353 probable UDP-glucose 97.1 0.0067 1.5E-07 58.0 11.9 43 3-47 2-44 (473)
131 PF13380 CoA_binding_2: CoA bi 97.1 0.0016 3.5E-08 49.8 6.3 100 4-134 2-106 (116)
132 PF07991 IlvN: Acetohydroxy ac 97.1 0.0011 2.4E-08 53.0 5.5 88 4-106 6-97 (165)
133 PRK13403 ketol-acid reductoiso 97.1 0.0013 2.9E-08 58.8 6.5 71 4-90 18-88 (335)
134 PRK14620 NAD(P)H-dependent gly 97.1 0.0016 3.4E-08 59.6 7.3 99 3-106 1-109 (326)
135 PRK08664 aspartate-semialdehyd 97.1 0.00093 2E-08 61.6 5.7 95 1-102 2-105 (349)
136 PRK06129 3-hydroxyacyl-CoA deh 97.1 0.0049 1.1E-07 55.9 10.2 109 4-122 4-132 (308)
137 PRK08955 glyceraldehyde-3-phos 97.0 0.0029 6.2E-08 57.5 8.3 102 1-105 1-121 (334)
138 COG0240 GpsA Glycerol-3-phosph 97.0 0.0022 4.8E-08 57.4 7.1 102 2-109 1-111 (329)
139 PRK06545 prephenate dehydrogen 97.0 0.0045 9.7E-08 57.4 9.3 80 4-94 2-81 (359)
140 PRK07531 bifunctional 3-hydrox 97.0 0.018 3.9E-07 55.8 13.7 75 3-86 5-93 (495)
141 COG0057 GapA Glyceraldehyde-3- 97.0 0.0038 8.1E-08 55.6 8.2 104 2-109 1-127 (335)
142 PRK15057 UDP-glucose 6-dehydro 97.0 0.0047 1E-07 57.7 9.4 74 3-84 1-84 (388)
143 COG1004 Ugd Predicted UDP-gluc 97.0 0.01 2.2E-07 54.3 11.0 96 3-104 1-119 (414)
144 PRK07729 glyceraldehyde-3-phos 97.0 0.0034 7.4E-08 56.9 8.0 103 1-105 1-122 (343)
145 PRK06035 3-hydroxyacyl-CoA deh 97.0 0.02 4.4E-07 51.4 13.0 79 1-86 1-98 (291)
146 COG1064 AdhP Zn-dependent alco 97.0 0.012 2.5E-07 53.4 11.2 136 4-160 169-331 (339)
147 PLN02272 glyceraldehyde-3-phos 97.0 0.0035 7.5E-08 58.2 8.1 101 3-105 86-207 (421)
148 COG0364 Zwf Glucose-6-phosphat 96.9 0.0028 6.1E-08 59.1 7.3 202 3-213 8-255 (483)
149 COG4569 MhpF Acetaldehyde dehy 96.9 0.0026 5.5E-08 52.2 6.2 100 2-110 4-108 (310)
150 PF02826 2-Hacid_dh_C: D-isome 96.9 0.0015 3.3E-08 54.1 5.2 66 3-84 37-102 (178)
151 TIGR02356 adenyl_thiF thiazole 96.9 0.003 6.4E-08 53.5 7.0 92 3-99 22-138 (202)
152 PRK06130 3-hydroxybutyryl-CoA 96.9 0.0062 1.3E-07 55.3 9.5 102 4-111 6-121 (311)
153 PTZ00023 glyceraldehyde-3-phos 96.9 0.0045 9.7E-08 56.1 8.2 105 1-107 1-125 (337)
154 COG2085 Predicted dinucleotide 96.9 0.0047 1E-07 51.6 7.7 81 3-95 2-82 (211)
155 cd01487 E1_ThiF_like E1_ThiF_l 96.8 0.0045 9.9E-08 51.0 7.1 33 4-39 1-33 (174)
156 COG0059 IlvC Ketol-acid reduct 96.8 0.0036 7.7E-08 54.9 6.4 75 4-93 20-94 (338)
157 PRK07530 3-hydroxybutyryl-CoA 96.8 0.005 1.1E-07 55.4 7.7 78 1-86 2-96 (292)
158 PRK00258 aroE shikimate 5-dehy 96.8 0.0021 4.6E-08 57.3 5.2 125 4-147 125-254 (278)
159 COG1023 Gnd Predicted 6-phosph 96.8 0.012 2.5E-07 49.9 9.0 117 3-163 1-118 (300)
160 TIGR02130 dapB_plant dihydrodi 96.7 0.012 2.5E-07 51.7 9.3 131 3-153 1-137 (275)
161 PRK15425 gapA glyceraldehyde-3 96.7 0.0094 2E-07 54.0 9.0 105 1-107 1-124 (331)
162 PRK08223 hypothetical protein; 96.7 0.0057 1.2E-07 54.2 7.3 95 3-102 28-149 (287)
163 PRK12475 thiamine/molybdopteri 96.7 0.0051 1.1E-07 56.3 7.2 96 2-102 24-146 (338)
164 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.014 3.1E-07 49.2 9.4 98 3-117 29-128 (200)
165 PLN03096 glyceraldehyde-3-phos 96.7 0.0059 1.3E-07 56.4 7.6 102 1-105 59-183 (395)
166 COG0287 TyrA Prephenate dehydr 96.7 0.015 3.2E-07 51.7 9.8 85 1-95 2-86 (279)
167 PLN03139 formate dehydrogenase 96.7 0.0023 5.1E-08 59.3 4.7 69 3-86 200-268 (386)
168 cd00757 ThiF_MoeB_HesA_family 96.6 0.0067 1.5E-07 52.4 7.2 94 2-100 21-139 (228)
169 TIGR01851 argC_other N-acetyl- 96.6 0.0038 8.2E-08 55.8 5.5 75 3-101 2-77 (310)
170 PRK06522 2-dehydropantoate 2-r 96.6 0.012 2.6E-07 53.2 8.8 85 3-94 1-87 (304)
171 TIGR02853 spore_dpaA dipicolin 96.6 0.0065 1.4E-07 54.3 6.9 115 4-145 153-272 (287)
172 TIGR01019 sucCoAalpha succinyl 96.5 0.012 2.6E-07 52.4 8.2 105 3-123 7-113 (286)
173 PRK05808 3-hydroxybutyryl-CoA 96.5 0.0051 1.1E-07 55.0 6.0 84 1-94 1-105 (282)
174 PRK14619 NAD(P)H-dependent gly 96.5 0.004 8.6E-08 56.5 5.3 64 2-93 4-67 (308)
175 TIGR02717 AcCoA-syn-alpha acet 96.5 0.012 2.6E-07 56.2 8.5 102 3-123 8-120 (447)
176 cd05211 NAD_bind_Glu_Leu_Phe_V 96.5 0.017 3.7E-07 49.3 8.6 114 2-135 23-148 (217)
177 TIGR00507 aroE shikimate 5-deh 96.5 0.0062 1.3E-07 54.1 6.1 126 4-149 119-249 (270)
178 TIGR01809 Shik-DH-AROM shikima 96.5 0.0079 1.7E-07 53.7 6.8 76 4-86 127-203 (282)
179 PRK08040 putative semialdehyde 96.5 0.0024 5.1E-08 58.2 3.4 89 1-101 3-94 (336)
180 TIGR03376 glycerol3P_DH glycer 96.5 0.0071 1.5E-07 55.4 6.5 99 4-108 1-121 (342)
181 PF00899 ThiF: ThiF family; I 96.4 0.0084 1.8E-07 47.2 6.0 95 2-101 2-121 (135)
182 PRK12480 D-lactate dehydrogena 96.4 0.0067 1.5E-07 55.4 6.0 65 3-86 147-211 (330)
183 cd05293 LDH_1 A subgroup of L- 96.4 0.0094 2E-07 54.0 6.8 75 2-81 3-79 (312)
184 COG0373 HemA Glutamyl-tRNA red 96.4 0.012 2.6E-07 54.7 7.6 89 4-104 180-273 (414)
185 PRK08605 D-lactate dehydrogena 96.4 0.0063 1.4E-07 55.7 5.7 69 3-88 147-215 (332)
186 PRK14806 bifunctional cyclohex 96.4 0.026 5.6E-07 57.7 10.6 91 3-104 4-96 (735)
187 PLN02968 Probable N-acetyl-gam 96.4 0.0047 1E-07 57.4 4.7 92 1-102 37-132 (381)
188 PRK13243 glyoxylate reductase; 96.4 0.0047 1E-07 56.5 4.7 66 3-85 151-216 (333)
189 PRK12439 NAD(P)H-dependent gly 96.4 0.0077 1.7E-07 55.4 6.1 100 2-108 7-116 (341)
190 PRK09310 aroDE bifunctional 3- 96.3 0.011 2.3E-07 57.0 7.2 117 3-147 333-449 (477)
191 PRK07066 3-hydroxybutyryl-CoA 96.3 0.0086 1.9E-07 54.3 6.2 77 4-87 9-97 (321)
192 TIGR03025 EPS_sugtrans exopoly 96.3 0.014 3E-07 55.9 8.0 91 3-102 126-220 (445)
193 PRK08762 molybdopterin biosynt 96.3 0.011 2.5E-07 55.1 7.0 96 2-102 135-255 (376)
194 PTZ00353 glycosomal glyceralde 96.3 0.015 3.2E-07 52.8 7.4 103 1-105 1-125 (342)
195 PRK07688 thiamine/molybdopteri 96.3 0.014 3E-07 53.5 7.2 95 2-101 24-145 (339)
196 COG0569 TrkA K+ transport syst 96.2 0.02 4.3E-07 49.3 7.6 94 3-104 1-99 (225)
197 PRK12921 2-dehydropantoate 2-r 96.2 0.018 3.8E-07 52.1 7.6 97 3-106 1-105 (305)
198 PRK05678 succinyl-CoA syntheta 96.2 0.029 6.4E-07 50.0 8.7 105 3-123 9-115 (291)
199 TIGR02355 moeB molybdopterin s 96.2 0.016 3.4E-07 50.4 6.9 34 3-39 25-58 (240)
200 cd00755 YgdL_like Family of ac 96.2 0.054 1.2E-06 46.7 10.0 145 2-166 11-180 (231)
201 PLN00125 Succinyl-CoA ligase [ 96.2 0.018 4E-07 51.4 7.3 105 4-123 14-120 (300)
202 PRK05600 thiamine biosynthesis 96.2 0.019 4.1E-07 53.3 7.6 94 2-100 41-159 (370)
203 PLN00203 glutamyl-tRNA reducta 96.2 0.017 3.7E-07 55.9 7.5 84 3-95 267-354 (519)
204 COG0111 SerA Phosphoglycerate 96.2 0.0052 1.1E-07 55.8 3.8 118 3-166 143-260 (324)
205 TIGR01035 hemA glutamyl-tRNA r 96.1 0.014 3.1E-07 55.1 6.8 92 3-105 181-277 (417)
206 cd01492 Aos1_SUMO Ubiquitin ac 96.1 0.014 3E-07 49.2 6.0 93 3-100 22-138 (197)
207 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.038 8.3E-07 47.6 8.8 112 1-135 30-157 (227)
208 PRK08818 prephenate dehydrogen 96.1 0.011 2.4E-07 54.6 5.7 70 2-96 4-74 (370)
209 PRK13535 erythrose 4-phosphate 96.1 0.024 5.2E-07 51.6 7.8 104 3-107 2-126 (336)
210 PRK05671 aspartate-semialdehyd 96.1 0.0071 1.5E-07 55.2 4.4 86 3-101 5-94 (336)
211 PRK08644 thiamine biosynthesis 96.1 0.021 4.6E-07 48.6 7.0 33 3-38 29-61 (212)
212 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.1 0.055 1.2E-06 52.4 10.5 99 4-112 7-127 (503)
213 PLN02539 glucose-6-phosphate 1 96.1 0.031 6.7E-07 53.3 8.6 48 76-123 130-184 (491)
214 PTZ00345 glycerol-3-phosphate 96.1 0.011 2.4E-07 54.6 5.5 103 2-107 11-133 (365)
215 cd05297 GH4_alpha_glucosidase_ 96.1 0.014 3E-07 55.3 6.3 85 3-91 1-92 (423)
216 PRK14027 quinate/shikimate deh 96.0 0.017 3.8E-07 51.4 6.6 78 4-86 129-207 (283)
217 PF00479 G6PD_N: Glucose-6-pho 96.0 0.0019 4.1E-08 53.6 0.3 50 74-123 106-163 (183)
218 PRK05225 ketol-acid reductoiso 96.0 0.0098 2.1E-07 55.6 4.9 82 3-99 37-126 (487)
219 PRK00045 hemA glutamyl-tRNA re 96.0 0.026 5.7E-07 53.5 7.9 91 3-104 183-279 (423)
220 PLN02237 glyceraldehyde-3-phos 96.0 0.027 6E-07 52.6 7.7 101 1-105 74-198 (442)
221 PRK07819 3-hydroxybutyryl-CoA 96.0 0.016 3.6E-07 51.8 6.0 81 4-91 7-102 (286)
222 PRK13940 glutamyl-tRNA reducta 95.9 0.012 2.5E-07 55.4 5.2 72 3-84 182-253 (414)
223 PRK05597 molybdopterin biosynt 95.9 0.024 5.2E-07 52.4 7.2 93 2-99 28-145 (355)
224 PLN02545 3-hydroxybutyryl-CoA 95.9 0.035 7.5E-07 50.0 8.1 75 4-87 6-97 (295)
225 COG1810 Uncharacterized protei 95.9 0.085 1.8E-06 44.1 9.4 130 3-158 2-136 (224)
226 PRK03659 glutathione-regulated 95.9 0.06 1.3E-06 53.5 10.3 104 3-119 401-510 (601)
227 TIGR03023 WcaJ_sugtrans Undeca 95.9 0.013 2.7E-07 56.3 5.4 91 3-102 129-223 (451)
228 PRK07574 formate dehydrogenase 95.9 0.014 3E-07 54.3 5.4 117 3-164 193-309 (385)
229 cd01483 E1_enzyme_family Super 95.9 0.032 7E-07 44.3 6.8 93 4-101 1-118 (143)
230 PF02254 TrkA_N: TrkA-N domain 95.9 0.08 1.7E-06 40.2 8.8 100 5-117 1-106 (116)
231 cd05291 HicDH_like L-2-hydroxy 95.8 0.053 1.2E-06 49.1 8.9 74 4-84 2-79 (306)
232 COG0136 Asd Aspartate-semialde 95.8 0.048 1.1E-06 49.0 8.2 146 2-164 1-157 (334)
233 PRK12853 glucose-6-phosphate 1 95.8 0.049 1.1E-06 52.0 8.8 60 64-123 97-164 (482)
234 PRK08306 dipicolinate synthase 95.8 0.025 5.3E-07 50.9 6.3 114 3-143 153-271 (296)
235 PRK15409 bifunctional glyoxyla 95.7 0.014 3E-07 53.2 4.5 65 3-84 146-211 (323)
236 COG1052 LdhA Lactate dehydroge 95.7 0.014 3E-07 53.0 4.5 67 3-86 147-213 (324)
237 PF00056 Ldh_1_N: lactate/mala 95.7 0.049 1.1E-06 43.2 7.2 76 3-83 1-79 (141)
238 PTZ00187 succinyl-CoA syntheta 95.7 0.061 1.3E-06 48.4 8.4 84 3-99 30-114 (317)
239 PLN02383 aspartate semialdehyd 95.7 0.015 3.1E-07 53.4 4.5 88 1-101 6-97 (344)
240 PRK15116 sulfur acceptor prote 95.6 0.066 1.4E-06 47.2 8.2 133 2-154 30-187 (268)
241 PRK08229 2-dehydropantoate 2-r 95.6 0.037 8.1E-07 50.9 7.1 87 1-95 1-95 (341)
242 cd01484 E1-2_like Ubiquitin ac 95.6 0.044 9.5E-07 47.4 6.9 31 4-37 1-31 (234)
243 PRK06932 glycerate dehydrogena 95.6 0.013 2.9E-07 53.1 3.9 61 3-84 148-208 (314)
244 PTZ00309 glucose-6-phosphate 1 95.6 0.06 1.3E-06 52.0 8.3 48 76-123 167-220 (542)
245 PTZ00434 cytosolic glyceraldeh 95.6 0.026 5.6E-07 51.4 5.6 106 1-107 2-139 (361)
246 PRK08328 hypothetical protein; 95.5 0.049 1.1E-06 47.1 7.2 37 2-41 27-63 (231)
247 PF02737 3HCDH_N: 3-hydroxyacy 95.5 0.03 6.6E-07 46.4 5.6 76 4-86 1-91 (180)
248 PRK06728 aspartate-semialdehyd 95.5 0.014 3.1E-07 53.2 3.9 88 2-101 5-96 (347)
249 KOG2380 Prephenate dehydrogena 95.5 0.026 5.5E-07 50.4 5.1 69 2-85 52-120 (480)
250 PRK15469 ghrA bifunctional gly 95.4 0.014 3E-07 52.9 3.5 67 3-86 137-203 (312)
251 PRK08268 3-hydroxy-acyl-CoA de 95.4 0.17 3.6E-06 49.2 11.0 77 4-90 9-103 (507)
252 KOG0069 Glyoxylate/hydroxypyru 95.4 0.019 4.1E-07 51.8 4.0 70 4-89 164-233 (336)
253 PRK15438 erythronate-4-phospha 95.3 0.016 3.4E-07 53.8 3.5 62 3-84 117-178 (378)
254 cd05292 LDH_2 A subgroup of L- 95.3 0.037 8E-07 50.1 5.9 75 3-84 1-78 (308)
255 PRK05690 molybdopterin biosynt 95.3 0.063 1.4E-06 46.9 7.1 33 3-38 33-65 (245)
256 cd01489 Uba2_SUMO Ubiquitin ac 95.3 0.053 1.1E-06 48.9 6.7 32 4-38 1-32 (312)
257 cd01485 E1-1_like Ubiquitin ac 95.3 0.062 1.3E-06 45.3 6.8 96 2-102 19-143 (198)
258 KOG0172 Lysine-ketoglutarate r 95.3 0.19 4.1E-06 45.9 10.0 144 2-166 2-156 (445)
259 PRK07403 glyceraldehyde-3-phos 95.3 0.06 1.3E-06 48.9 7.0 102 3-105 2-123 (337)
260 PRK12550 shikimate 5-dehydroge 95.3 0.032 7E-07 49.4 5.2 117 4-148 124-250 (272)
261 cd01486 Apg7 Apg7 is an E1-lik 95.2 0.053 1.2E-06 48.2 6.4 93 4-101 1-137 (307)
262 PRK07877 hypothetical protein; 95.2 0.06 1.3E-06 54.1 7.4 98 3-104 108-228 (722)
263 COG0362 Gnd 6-phosphogluconate 95.2 0.38 8.2E-06 44.1 11.6 113 1-122 2-119 (473)
264 PRK00683 murD UDP-N-acetylmura 95.2 0.052 1.1E-06 51.5 6.7 88 1-103 1-89 (418)
265 PRK03562 glutathione-regulated 95.1 0.15 3.2E-06 50.9 10.0 104 3-119 401-510 (621)
266 PRK07878 molybdopterin biosynt 95.1 0.067 1.5E-06 50.2 7.1 35 2-39 42-76 (392)
267 PRK08410 2-hydroxyacid dehydro 95.1 0.019 4.1E-07 52.0 3.4 62 3-84 146-207 (311)
268 PRK06223 malate dehydrogenase; 95.1 0.12 2.6E-06 46.8 8.6 73 3-81 3-78 (307)
269 PRK10669 putative cation:proto 95.1 0.3 6.5E-06 48.2 11.9 124 3-155 418-547 (558)
270 PRK04148 hypothetical protein; 95.1 0.18 3.8E-06 39.3 8.1 90 3-109 18-113 (134)
271 PRK14967 putative methyltransf 95.1 0.97 2.1E-05 38.8 13.8 72 4-82 39-110 (223)
272 PF02056 Glyco_hydro_4: Family 95.1 0.1 2.3E-06 43.0 7.2 76 4-84 1-84 (183)
273 COG1063 Tdh Threonine dehydrog 95.0 0.19 4.2E-06 46.4 9.7 86 4-97 171-262 (350)
274 PRK10124 putative UDP-glucose 95.0 0.16 3.5E-06 48.7 9.5 86 4-102 145-235 (463)
275 TIGR02354 thiF_fam2 thiamine b 95.0 0.11 2.5E-06 43.7 7.5 34 2-38 21-54 (200)
276 PRK07411 hypothetical protein; 95.0 0.069 1.5E-06 50.0 6.7 92 3-99 39-155 (390)
277 COG0169 AroE Shikimate 5-dehyd 95.0 0.056 1.2E-06 48.0 5.8 78 4-88 128-205 (283)
278 PRK14852 hypothetical protein; 95.0 0.098 2.1E-06 53.9 8.1 98 3-105 333-457 (989)
279 COG1486 CelF Alpha-galactosida 95.0 0.072 1.6E-06 49.8 6.6 82 1-87 2-91 (442)
280 PRK14874 aspartate-semialdehyd 95.0 0.029 6.2E-07 51.5 4.1 86 3-101 2-91 (334)
281 cd00401 AdoHcyase S-adenosyl-L 94.9 0.071 1.5E-06 50.0 6.7 79 4-98 204-283 (413)
282 TIGR01296 asd_B aspartate-semi 94.9 0.02 4.4E-07 52.5 3.0 85 4-101 1-89 (339)
283 cd01491 Ube1_repeat1 Ubiquitin 94.9 0.12 2.7E-06 45.9 7.8 37 2-41 19-55 (286)
284 PRK06091 membrane protein FdrA 94.9 0.35 7.5E-06 46.7 11.2 70 62-139 105-175 (555)
285 TIGR03022 WbaP_sugtrans Undeca 94.9 0.067 1.5E-06 51.4 6.6 90 4-102 127-221 (456)
286 PRK14851 hypothetical protein; 94.9 0.11 2.4E-06 52.0 8.2 100 3-105 44-168 (679)
287 PRK09496 trkA potassium transp 94.9 0.069 1.5E-06 51.2 6.6 92 3-103 1-98 (453)
288 PRK05476 S-adenosyl-L-homocyst 94.8 0.07 1.5E-06 50.2 6.4 64 4-83 214-277 (425)
289 PLN02928 oxidoreductase family 94.8 0.034 7.4E-07 51.2 4.2 73 3-84 160-237 (347)
290 COG0074 SucD Succinyl-CoA synt 94.8 0.17 3.7E-06 44.2 8.1 111 4-139 10-124 (293)
291 cd01490 Ube1_repeat2 Ubiquitin 94.8 0.091 2E-06 49.5 7.0 95 4-101 1-127 (435)
292 PLN02602 lactate dehydrogenase 94.8 0.059 1.3E-06 49.5 5.6 75 3-82 38-114 (350)
293 KOG0563 Glucose-6-phosphate 1- 94.8 0.51 1.1E-05 44.0 11.4 47 76-122 128-180 (499)
294 PRK06153 hypothetical protein; 94.8 0.12 2.7E-06 47.6 7.6 33 3-38 177-209 (393)
295 PRK00257 erythronate-4-phospha 94.7 0.034 7.5E-07 51.6 4.0 62 3-84 117-178 (381)
296 PRK12548 shikimate 5-dehydroge 94.7 0.075 1.6E-06 47.7 6.1 128 4-146 128-268 (289)
297 TIGR00936 ahcY adenosylhomocys 94.7 0.086 1.9E-06 49.3 6.6 64 4-83 197-260 (406)
298 PRK14106 murD UDP-N-acetylmura 94.7 0.14 3.1E-06 49.0 8.4 92 3-103 6-98 (450)
299 PRK03369 murD UDP-N-acetylmura 94.7 0.12 2.7E-06 50.0 7.9 87 4-103 14-100 (488)
300 TIGR01327 PGDH D-3-phosphoglyc 94.7 0.041 8.9E-07 53.7 4.6 65 4-84 140-204 (525)
301 PF05368 NmrA: NmrA-like famil 94.6 0.1 2.2E-06 45.0 6.5 82 5-97 1-94 (233)
302 PRK13397 3-deoxy-7-phosphohept 94.5 1.3 2.9E-05 38.5 12.8 60 63-124 90-149 (250)
303 TIGR01361 DAHP_synth_Bsub phos 94.4 0.42 9.1E-06 42.1 9.9 60 63-124 100-159 (260)
304 PRK09880 L-idonate 5-dehydroge 94.4 0.6 1.3E-05 42.9 11.5 90 4-102 172-265 (343)
305 PRK11790 D-3-phosphoglycerate 94.4 0.038 8.3E-07 52.0 3.5 62 4-84 153-214 (409)
306 PRK12749 quinate/shikimate deh 94.3 0.14 3E-06 45.9 6.8 126 4-148 126-267 (288)
307 PTZ00075 Adenosylhomocysteinas 94.3 0.099 2.1E-06 49.7 6.1 63 4-82 256-318 (476)
308 TIGR03450 mycothiol_INO1 inosi 94.3 0.22 4.8E-06 44.8 7.9 141 3-154 1-202 (351)
309 PRK06436 glycerate dehydrogena 94.3 0.049 1.1E-06 49.1 3.8 63 3-85 123-185 (303)
310 PRK15076 alpha-galactosidase; 94.2 0.076 1.6E-06 50.4 5.1 77 3-84 2-86 (431)
311 PRK09414 glutamate dehydrogena 94.2 0.48 1E-05 44.9 10.3 110 2-117 232-356 (445)
312 PRK06718 precorrin-2 dehydroge 94.2 0.17 3.7E-06 42.7 6.7 128 4-154 12-142 (202)
313 TIGR01381 E1_like_apg7 E1-like 94.1 0.13 2.9E-06 50.4 6.7 95 2-101 338-477 (664)
314 COG2242 CobL Precorrin-6B meth 94.1 1.3 2.9E-05 36.5 11.3 110 5-123 38-151 (187)
315 PF02844 GARS_N: Phosphoribosy 94.1 0.029 6.4E-07 41.2 1.6 87 3-101 1-90 (100)
316 PRK11199 tyrA bifunctional cho 94.1 0.092 2E-06 49.0 5.3 65 3-95 99-164 (374)
317 PRK13581 D-3-phosphoglycerate 94.1 0.064 1.4E-06 52.4 4.4 65 3-84 141-205 (526)
318 PTZ00117 malate dehydrogenase; 94.0 0.29 6.3E-06 44.5 8.3 74 2-81 5-81 (319)
319 TIGR01470 cysG_Nterm siroheme 94.0 0.21 4.6E-06 42.2 7.0 127 4-154 11-142 (205)
320 PRK02472 murD UDP-N-acetylmura 93.9 0.2 4.4E-06 47.9 7.5 92 4-103 7-98 (447)
321 cd05197 GH4_glycoside_hydrolas 93.7 0.15 3.3E-06 48.2 6.2 81 3-86 1-87 (425)
322 PRK00066 ldh L-lactate dehydro 93.7 0.12 2.6E-06 46.9 5.3 74 2-82 6-82 (315)
323 COG1062 AdhC Zn-dependent alco 93.7 0.39 8.4E-06 43.3 8.1 93 4-105 188-287 (366)
324 cd05290 LDH_3 A subgroup of L- 93.6 0.12 2.5E-06 46.8 4.9 73 4-82 1-77 (307)
325 PRK12595 bifunctional 3-deoxy- 93.6 0.68 1.5E-05 42.8 9.9 59 64-124 194-252 (360)
326 PRK01438 murD UDP-N-acetylmura 93.4 0.28 6.2E-06 47.4 7.7 90 4-103 18-108 (480)
327 PRK06487 glycerate dehydrogena 93.4 0.082 1.8E-06 48.1 3.7 59 4-84 150-208 (317)
328 PRK13396 3-deoxy-7-phosphohept 93.4 0.8 1.7E-05 42.0 9.9 58 64-123 177-234 (352)
329 TIGR01763 MalateDH_bact malate 93.4 0.19 4.2E-06 45.4 6.0 75 3-83 2-79 (305)
330 PRK06395 phosphoribosylamine-- 93.4 0.23 5E-06 47.3 6.8 110 1-122 1-115 (435)
331 PF13727 CoA_binding_3: CoA-bi 93.3 0.082 1.8E-06 43.2 3.3 88 6-101 81-172 (175)
332 cd05311 NAD_bind_2_malic_enz N 93.3 0.19 4.2E-06 43.2 5.7 103 3-122 26-141 (226)
333 TIGR00518 alaDH alanine dehydr 93.3 0.26 5.6E-06 45.9 6.8 71 3-82 168-239 (370)
334 PF13241 NAD_binding_7: Putati 93.3 0.26 5.7E-06 36.6 5.6 83 3-103 8-91 (103)
335 PRK06598 aspartate-semialdehyd 93.3 0.063 1.4E-06 49.5 2.7 90 2-103 1-96 (369)
336 PRK01710 murD UDP-N-acetylmura 93.2 0.3 6.5E-06 47.0 7.3 91 4-103 16-107 (458)
337 PRK06249 2-dehydropantoate 2-r 93.1 0.15 3.3E-06 46.2 5.0 83 2-93 5-92 (313)
338 PLN02306 hydroxypyruvate reduc 93.1 0.16 3.5E-06 47.4 5.1 71 3-83 166-246 (386)
339 PLN02494 adenosylhomocysteinas 93.0 0.25 5.5E-06 46.9 6.4 78 4-97 256-334 (477)
340 KOG0024 Sorbitol dehydrogenase 93.0 0.81 1.8E-05 41.0 8.9 135 3-159 171-317 (354)
341 cd05298 GH4_GlvA_pagL_like Gly 93.0 0.33 7.2E-06 46.1 7.1 93 3-98 1-102 (437)
342 cd01493 APPBP1_RUB Ubiquitin a 93.0 0.36 7.8E-06 45.6 7.3 96 3-101 21-141 (425)
343 TIGR03013 EpsB_2 sugar transfe 92.9 0.27 5.9E-06 47.0 6.6 88 4-102 126-218 (442)
344 PRK05708 2-dehydropantoate 2-r 92.8 0.24 5.2E-06 44.8 5.8 43 1-47 1-43 (305)
345 PF00670 AdoHcyase_NAD: S-aden 92.7 0.36 7.8E-06 38.9 5.9 78 4-98 25-104 (162)
346 cd05296 GH4_P_beta_glucosidase 92.7 0.29 6.4E-06 46.2 6.3 80 3-85 1-87 (419)
347 PTZ00082 L-lactate dehydrogena 92.7 0.25 5.3E-06 45.0 5.6 72 4-81 8-82 (321)
348 PRK00377 cbiT cobalt-precorrin 92.6 0.7 1.5E-05 38.8 8.0 73 4-81 43-119 (198)
349 PRK00141 murD UDP-N-acetylmura 92.6 0.44 9.5E-06 46.0 7.6 88 4-103 17-104 (473)
350 cd05313 NAD_bind_2_Glu_DH NAD( 92.5 2.2 4.7E-05 37.3 11.0 116 3-135 39-175 (254)
351 TIGR01724 hmd_rel H2-forming N 92.5 1 2.2E-05 40.6 9.0 105 3-119 1-129 (341)
352 cd01078 NAD_bind_H4MPT_DH NADP 92.4 0.43 9.3E-06 40.0 6.5 77 3-86 29-110 (194)
353 TIGR00112 proC pyrroline-5-car 92.4 2.3 5.1E-05 37.0 11.3 120 30-162 11-141 (245)
354 PRK04663 murD UDP-N-acetylmura 92.4 0.39 8.4E-06 45.9 6.9 90 4-103 9-98 (438)
355 PRK13398 3-deoxy-7-phosphohept 92.3 2.8 6.2E-05 37.0 11.7 59 64-124 103-161 (266)
356 PRK09287 6-phosphogluconate de 92.2 1.6 3.4E-05 41.9 10.6 98 18-123 5-106 (459)
357 PRK08673 3-deoxy-7-phosphohept 92.1 2.3 4.9E-05 38.9 11.0 58 64-123 169-226 (335)
358 cd00650 LDH_MDH_like NAD-depen 92.1 0.25 5.3E-06 43.7 4.8 72 5-81 1-78 (263)
359 cd01488 Uba3_RUB Ubiquitin act 92.0 0.5 1.1E-05 42.2 6.6 82 4-90 1-105 (291)
360 PLN02477 glutamate dehydrogena 91.9 1.1 2.3E-05 42.2 8.9 105 3-118 207-324 (410)
361 COG1086 Predicted nucleoside-d 91.9 0.16 3.6E-06 48.7 3.6 88 3-100 117-207 (588)
362 PF02558 ApbA: Ketopantoate re 91.8 0.39 8.5E-06 38.3 5.3 83 5-92 1-86 (151)
363 COG1832 Predicted CoA-binding 91.7 1.5 3.2E-05 34.0 7.9 54 63-119 65-118 (140)
364 PRK12854 glucose-6-phosphate 1 91.7 0.34 7.3E-06 46.3 5.4 48 76-123 121-172 (484)
365 COG0151 PurD Phosphoribosylami 91.4 1 2.2E-05 41.9 8.0 145 3-164 1-146 (428)
366 TIGR03570 NeuD_NnaD sugar O-ac 91.4 0.29 6.4E-06 40.9 4.4 82 4-98 1-84 (201)
367 PF12847 Methyltransf_18: Meth 91.3 0.84 1.8E-05 34.0 6.5 71 4-81 4-78 (112)
368 PRK06719 precorrin-2 dehydroge 91.3 0.5 1.1E-05 38.1 5.4 126 4-154 15-142 (157)
369 cd01339 LDH-like_MDH L-lactate 91.3 1.2 2.6E-05 40.2 8.4 71 5-82 1-75 (300)
370 COG1648 CysG Siroheme synthase 91.3 0.7 1.5E-05 39.2 6.4 129 4-154 14-145 (210)
371 KOG2017 Molybdopterin synthase 91.2 0.64 1.4E-05 41.9 6.3 95 4-103 68-187 (427)
372 COG0771 MurD UDP-N-acetylmuram 91.1 0.64 1.4E-05 44.1 6.6 91 3-103 8-99 (448)
373 PRK09496 trkA potassium transp 91.1 1.1 2.4E-05 42.9 8.5 93 3-103 232-329 (453)
374 PRK02705 murD UDP-N-acetylmura 91.0 0.83 1.8E-05 43.9 7.6 92 4-103 2-98 (459)
375 TIGR01757 Malate-DH_plant mala 90.9 0.4 8.6E-06 44.7 4.9 76 2-81 44-128 (387)
376 KOG2653 6-phosphogluconate deh 90.8 2.6 5.6E-05 38.3 9.6 112 3-122 7-122 (487)
377 TIGR03693 ocin_ThiF_like putat 90.8 1.5 3.2E-05 43.0 8.7 100 3-106 130-240 (637)
378 TIGR01534 GAPDH-I glyceraldehy 90.8 0.74 1.6E-05 41.9 6.5 101 4-105 1-123 (327)
379 TIGR01408 Ube1 ubiquitin-activ 90.7 0.79 1.7E-05 48.2 7.4 90 3-97 25-135 (1008)
380 PRK04690 murD UDP-N-acetylmura 90.6 0.75 1.6E-05 44.4 6.9 89 4-103 10-99 (468)
381 TIGR01362 KDO8P_synth 3-deoxy- 90.6 2.7 5.8E-05 36.5 9.3 58 65-124 86-143 (258)
382 PLN02520 bifunctional 3-dehydr 90.6 0.55 1.2E-05 45.9 5.9 124 4-148 381-509 (529)
383 PLN00106 malate dehydrogenase 90.6 0.38 8.2E-06 43.8 4.4 76 2-83 18-96 (323)
384 PRK04308 murD UDP-N-acetylmura 90.5 1.1 2.4E-05 42.9 7.9 92 4-104 7-98 (445)
385 PRK05198 2-dehydro-3-deoxyphos 90.4 2.9 6.4E-05 36.4 9.4 58 65-124 94-151 (264)
386 cd00300 LDH_like L-lactate deh 90.4 0.53 1.1E-05 42.5 5.2 74 5-83 1-76 (300)
387 PF13460 NAD_binding_10: NADH( 90.4 0.65 1.4E-05 38.2 5.5 83 5-123 1-88 (183)
388 TIGR02964 xanthine_xdhC xanthi 90.3 0.8 1.7E-05 40.0 6.1 81 3-94 101-182 (246)
389 KOG0023 Alcohol dehydrogenase, 90.2 1.8 4E-05 38.7 8.1 98 3-140 183-283 (360)
390 TIGR01087 murD UDP-N-acetylmur 90.1 0.95 2.1E-05 43.1 7.0 92 4-104 1-93 (433)
391 TIGR01408 Ube1 ubiquitin-activ 90.0 0.78 1.7E-05 48.2 6.7 97 2-101 419-547 (1008)
392 PRK03806 murD UDP-N-acetylmura 90.0 1.1 2.4E-05 42.7 7.5 90 4-105 8-97 (438)
393 PRK14573 bifunctional D-alanyl 89.9 0.97 2.1E-05 46.8 7.3 91 1-104 2-94 (809)
394 PTZ00079 NADP-specific glutama 89.8 4.2 9.2E-05 38.6 10.7 107 3-117 238-365 (454)
395 TIGR03569 NeuB_NnaB N-acetylne 89.8 3.8 8.2E-05 37.4 10.2 56 67-123 103-158 (329)
396 PRK00421 murC UDP-N-acetylmura 89.7 1.1 2.3E-05 43.2 7.1 88 4-104 9-97 (461)
397 PRK00107 gidB 16S rRNA methylt 89.7 3.8 8.2E-05 34.1 9.5 72 3-80 47-119 (187)
398 CHL00194 ycf39 Ycf39; Provisio 89.7 1.2 2.6E-05 40.4 7.1 95 3-123 1-100 (317)
399 PRK15204 undecaprenyl-phosphat 89.6 2.4 5.2E-05 41.0 9.3 84 4-98 148-235 (476)
400 TIGR01759 MalateDH-SF1 malate 89.2 0.62 1.3E-05 42.4 4.7 76 2-82 3-88 (323)
401 PRK12457 2-dehydro-3-deoxyphos 89.2 4.2 9.1E-05 35.8 9.5 50 74-123 107-156 (281)
402 PRK11873 arsM arsenite S-adeno 89.1 6.5 0.00014 34.8 11.2 96 3-103 79-183 (272)
403 PLN02640 glucose-6-phosphate 1 89.0 0.79 1.7E-05 44.6 5.4 48 76-123 198-251 (573)
404 COG1179 Dinucleotide-utilizing 89.0 2.2 4.7E-05 36.7 7.4 145 4-166 32-201 (263)
405 PRK14982 acyl-ACP reductase; P 88.9 0.78 1.7E-05 42.0 5.1 96 3-111 156-252 (340)
406 TIGR03587 Pse_Me-ase pseudamin 88.7 3 6.5E-05 35.3 8.3 66 4-80 46-112 (204)
407 PRK14031 glutamate dehydrogena 88.6 3.2 6.9E-05 39.4 9.1 109 3-118 229-356 (444)
408 PF10100 DUF2338: Uncharacteri 88.6 11 0.00025 35.0 12.2 145 4-156 3-193 (429)
409 PLN02333 glucose-6-phosphate 1 88.4 0.88 1.9E-05 44.5 5.4 48 76-123 227-280 (604)
410 PLN00112 malate dehydrogenase 88.4 0.78 1.7E-05 43.5 4.9 77 2-83 100-186 (444)
411 cd01337 MDH_glyoxysomal_mitoch 87.8 0.68 1.5E-05 41.9 4.0 34 3-38 1-35 (310)
412 PRK02006 murD UDP-N-acetylmura 87.7 1.8 3.9E-05 42.1 7.2 89 4-103 9-103 (498)
413 PRK06444 prephenate dehydrogen 87.6 0.6 1.3E-05 39.2 3.3 50 3-93 1-51 (197)
414 COG3268 Uncharacterized conser 87.6 1.5 3.3E-05 39.5 5.9 148 1-165 5-165 (382)
415 PRK00536 speE spermidine synth 87.5 4.8 0.0001 35.4 9.0 39 3-47 74-112 (262)
416 TIGR00138 gidB 16S rRNA methyl 87.4 5.7 0.00012 32.8 9.1 72 3-80 44-116 (181)
417 PRK03803 murD UDP-N-acetylmura 87.4 2.1 4.6E-05 41.0 7.4 91 4-103 8-98 (448)
418 PF00208 ELFV_dehydrog: Glutam 87.4 5 0.00011 35.0 9.0 137 3-152 33-185 (244)
419 PLN03033 2-dehydro-3-deoxyphos 87.3 4.5 9.7E-05 35.6 8.5 51 74-124 107-157 (290)
420 PRK00811 spermidine synthase; 87.3 15 0.00033 32.7 12.4 75 3-83 78-160 (283)
421 PRK01368 murD UDP-N-acetylmura 86.9 1.8 3.9E-05 41.5 6.6 87 4-104 8-94 (454)
422 TIGR01082 murC UDP-N-acetylmur 86.8 2.2 4.7E-05 40.9 7.1 88 4-103 1-88 (448)
423 KOG2733 Uncharacterized membra 86.8 3 6.4E-05 38.0 7.2 92 4-99 7-111 (423)
424 TIGR00877 purD phosphoribosyla 86.5 1.4 3.1E-05 41.8 5.7 89 3-101 1-92 (423)
425 PRK00885 phosphoribosylamine-- 86.4 1.9 4.2E-05 40.9 6.5 139 3-162 1-143 (420)
426 cd08298 CAD2 Cinnamyl alcohol 86.3 5 0.00011 36.3 9.0 81 4-98 170-250 (329)
427 TIGR03840 TMPT_Se_Te thiopurin 86.3 3.5 7.5E-05 35.1 7.4 38 4-47 37-74 (213)
428 PRK06988 putative formyltransf 86.2 1.1 2.4E-05 40.7 4.5 73 1-81 1-85 (312)
429 TIGR01202 bchC 2-desacetyl-2-h 86.1 2.4 5.1E-05 38.3 6.7 82 4-101 147-229 (308)
430 PRK12557 H(2)-dependent methyl 86.0 3.9 8.4E-05 37.6 7.9 99 3-113 1-123 (342)
431 PRK05442 malate dehydrogenase; 86.0 0.74 1.6E-05 42.0 3.2 36 2-39 4-45 (326)
432 cd01338 MDH_choloroplast_like 85.9 0.62 1.4E-05 42.4 2.7 74 2-82 2-87 (322)
433 TIGR00091 tRNA (guanine-N(7)-) 85.8 8.7 0.00019 32.1 9.5 74 4-84 19-98 (194)
434 PLN03075 nicotianamine synthas 85.8 3.2 7E-05 37.1 7.1 73 4-80 126-202 (296)
435 COG0039 Mdh Malate/lactate deh 85.6 1.4 3.1E-05 39.7 4.7 74 3-81 1-77 (313)
436 PRK00994 F420-dependent methyl 85.5 7.1 0.00015 33.3 8.5 23 1-23 1-23 (277)
437 PRK05086 malate dehydrogenase; 85.5 0.97 2.1E-05 41.0 3.7 74 3-83 1-79 (312)
438 TIGR03586 PseI pseudaminic aci 85.3 12 0.00026 34.2 10.6 56 67-123 104-159 (327)
439 PRK01390 murD UDP-N-acetylmura 85.2 2.8 6.1E-05 40.3 7.0 85 4-103 11-99 (460)
440 COG1927 Mtd Coenzyme F420-depe 85.1 10 0.00022 31.7 8.9 85 1-85 1-99 (277)
441 COG2201 CheB Chemotaxis respon 85.0 9.8 0.00021 34.9 9.8 101 2-107 1-108 (350)
442 TIGR01745 asd_gamma aspartate- 85.0 0.68 1.5E-05 42.7 2.5 91 3-103 1-95 (366)
443 cd05294 LDH-like_MDH_nadp A la 84.9 1.4 3E-05 39.9 4.5 74 3-82 1-81 (309)
444 PRK09424 pntA NAD(P) transhydr 84.8 3.5 7.7E-05 40.0 7.4 41 3-47 166-206 (509)
445 PRK00121 trmB tRNA (guanine-N( 84.7 10 0.00023 31.8 9.5 74 3-83 42-121 (202)
446 cd00704 MDH Malate dehydrogena 84.6 0.61 1.3E-05 42.5 2.1 76 3-82 1-85 (323)
447 PRK14030 glutamate dehydrogena 84.6 13 0.00028 35.4 10.8 108 3-118 229-357 (445)
448 KOG2018 Predicted dinucleotide 84.5 12 0.00026 33.5 9.7 146 5-170 77-247 (430)
449 TIGR01142 purT phosphoribosylg 84.5 1.4 3.1E-05 41.0 4.6 85 4-101 1-89 (380)
450 cd08239 THR_DH_like L-threonin 84.5 4.8 0.0001 36.7 8.0 88 4-101 166-259 (339)
451 PLN02366 spermidine synthase 84.3 9.5 0.00021 34.5 9.5 75 3-83 93-175 (308)
452 PF10087 DUF2325: Uncharacteri 84.2 11 0.00024 27.4 8.4 77 4-104 1-82 (97)
453 PRK09288 purT phosphoribosylgl 84.0 2.4 5.1E-05 39.8 5.9 86 2-100 12-101 (395)
454 PTZ00325 malate dehydrogenase; 84.0 1.2 2.5E-05 40.6 3.6 33 4-38 10-43 (321)
455 TIGR01772 MDH_euk_gproteo mala 83.9 1.8 3.9E-05 39.2 4.8 34 4-39 1-35 (312)
456 COG2227 UbiG 2-polyprenyl-3-me 83.7 3.6 7.8E-05 35.4 6.1 70 2-79 60-130 (243)
457 PRK10309 galactitol-1-phosphat 83.6 3.1 6.7E-05 38.2 6.3 90 4-102 163-259 (347)
458 COG1893 ApbA Ketopantoate redu 83.5 2.3 5E-05 38.4 5.3 84 3-95 1-89 (307)
459 cd08238 sorbose_phosphate_red 83.5 18 0.00038 34.2 11.5 96 4-101 178-286 (410)
460 PLN02827 Alcohol dehydrogenase 83.4 13 0.00028 34.7 10.4 85 4-97 196-287 (378)
461 PLN02586 probable cinnamyl alc 83.3 11 0.00024 34.9 9.9 85 4-99 186-273 (360)
462 TIGR03366 HpnZ_proposed putati 83.3 3.2 7E-05 36.8 6.1 84 4-97 123-211 (280)
463 COG3367 Uncharacterized conser 83.2 2.1 4.6E-05 38.3 4.7 96 21-123 20-121 (339)
464 PRK01581 speE spermidine synth 83.2 26 0.00056 32.5 11.8 76 3-84 152-237 (374)
465 PRK05562 precorrin-2 dehydroge 83.1 5.2 0.00011 34.3 6.9 129 3-154 26-158 (223)
466 cd01336 MDH_cytoplasmic_cytoso 82.9 1 2.3E-05 41.1 2.8 74 2-82 2-87 (325)
467 KOG2711 Glycerol-3-phosphate d 82.9 2.4 5.1E-05 38.3 4.9 103 1-107 20-143 (372)
468 COG1250 FadB 3-hydroxyacyl-CoA 82.8 2 4.3E-05 38.7 4.5 40 3-46 4-43 (307)
469 TIGR03736 PRTRC_ThiF PRTRC sys 82.8 3.9 8.5E-05 35.5 6.2 24 1-25 10-33 (244)
470 PLN02178 cinnamyl-alcohol dehy 82.2 19 0.00041 33.6 11.0 87 4-99 181-268 (375)
471 PRK04457 spermidine synthase; 82.1 35 0.00075 30.1 12.1 72 3-81 68-144 (262)
472 TIGR02469 CbiT precorrin-6Y C5 82.0 9.2 0.0002 28.7 7.6 72 4-81 22-96 (124)
473 cd05126 Mth938 Mth938 domain. 81.8 11 0.00025 28.6 7.7 63 63-137 49-115 (117)
474 TIGR01771 L-LDH-NAD L-lactate 81.8 5.8 0.00013 35.8 7.1 72 7-83 1-74 (299)
475 TIGR00715 precor6x_red precorr 81.4 4.9 0.00011 35.3 6.4 97 3-106 1-102 (256)
476 PRK08289 glyceraldehyde-3-phos 81.3 8.3 0.00018 36.7 8.1 105 2-107 127-262 (477)
477 PRK05784 phosphoribosylamine-- 81.2 1.9 4.1E-05 41.7 4.0 92 3-101 1-97 (486)
478 COG0476 ThiF Dinucleotide-util 81.1 6.2 0.00013 34.6 7.0 121 3-141 31-156 (254)
479 PF04321 RmlD_sub_bind: RmlD s 81.1 3.5 7.5E-05 36.9 5.5 58 3-81 1-59 (286)
480 TIGR02440 FadJ fatty oxidation 81.0 3.8 8.1E-05 41.7 6.2 40 4-46 306-345 (699)
481 KOG0068 D-3-phosphoglycerate d 81.0 2.7 5.9E-05 37.9 4.6 63 4-83 148-210 (406)
482 PF03059 NAS: Nicotianamine sy 80.9 7.1 0.00015 34.6 7.2 80 3-84 122-203 (276)
483 PF01993 MTD: methylene-5,6,7, 80.8 9.3 0.0002 32.7 7.4 65 3-87 2-73 (276)
484 TIGR01081 mpl UDP-N-acetylmura 80.8 5.2 0.00011 38.3 6.9 90 4-103 1-90 (448)
485 COG2910 Putative NADH-flavin r 80.5 3.6 7.7E-05 33.9 4.7 39 3-45 1-40 (211)
486 TIGR00477 tehB tellurite resis 80.5 21 0.00045 29.8 9.7 72 3-82 32-103 (195)
487 PRK00005 fmt methionyl-tRNA fo 80.2 3.1 6.8E-05 37.7 4.9 71 3-81 1-86 (309)
488 cd08230 glucose_DH Glucose deh 80.1 7 0.00015 36.0 7.4 91 4-103 175-269 (355)
489 PRK10637 cysG siroheme synthas 79.9 6.6 0.00014 37.8 7.2 129 3-154 13-145 (457)
490 PF02153 PDH: Prephenate dehyd 79.7 11 0.00023 33.2 8.0 64 21-95 4-67 (258)
491 PLN00016 RNA-binding protein; 79.6 7 0.00015 36.4 7.2 36 1-40 51-91 (378)
492 TIGR03649 ergot_EASG ergot alk 79.4 2.5 5.4E-05 37.6 4.0 71 4-84 1-78 (285)
493 COG4566 TtrR Response regulato 79.1 5.2 0.00011 33.1 5.2 45 65-109 66-110 (202)
494 PRK13789 phosphoribosylamine-- 79.0 2.7 5.9E-05 39.9 4.3 144 2-164 4-151 (426)
495 COG0220 Predicted S-adenosylme 78.7 5.4 0.00012 34.3 5.6 75 5-86 52-132 (227)
496 PLN02285 methionyl-tRNA formyl 78.2 3.9 8.4E-05 37.5 4.9 38 2-40 6-47 (334)
497 PRK11207 tellurite resistance 78.2 29 0.00062 29.0 9.9 72 3-82 32-104 (197)
498 cd03110 Fer4_NifH_child This p 78.1 36 0.00077 27.7 10.9 79 72-156 91-171 (179)
499 PLN02427 UDP-apiose/xylose syn 78.0 7.4 0.00016 36.3 6.9 40 2-44 14-54 (386)
500 PF08241 Methyltransf_11: Meth 77.9 4.7 0.0001 28.5 4.5 64 8-80 3-67 (95)
No 1
>PRK11579 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.7e-57 Score=413.81 Aligned_cols=320 Identities=18% Similarity=0.231 Sum_probs=257.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
++||||||+|.+|..+|++.+...++ ++|+++||+++++++ + .+++. ..| +|+++||+++++|+|+|+|
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~-~~l~av~d~~~~~~~---~----~~~~~-~~~--~~~~ell~~~~vD~V~I~t 72 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPG-LELAAVSSSDATKVK---A----DWPTV-TVV--SEPQHLFNDPNIDLIVIPT 72 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCC-CEEEEEECCCHHHHH---h----hCCCC-cee--CCHHHHhcCCCCCEEEEcC
Confidence 58999999999998668999988876 999999999987654 1 22233 233 8999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCee
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMM 159 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i~ 159 (355)
|+..|++++++||++|||||||||++.|++|+++|+++|++ +|++++|++++||+|.++++|++|++ ||+|+
T Consensus 73 p~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~------~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~ 146 (346)
T PRK11579 73 PNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKS------AGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVA 146 (346)
T ss_pred CcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH------hCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeE
Confidence 99999999999999999999999999999999999999999 59999999999999999999999997 99999
Q ss_pred EEEEEEeeccCCCCCccCcccccc--ccCccccchhhHHHHHHHHHhCCcceeEEEeecccCCCCCCCceEEEEEEecCC
Q 018445 160 SVQVIVEGSMNSSNPYFSSSWRRN--FTGGFILDMGVHFIAGLRMITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENG 237 (355)
Q Consensus 160 ~v~~~~~~~~~~~~~~~~~~w~~~--~~gg~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G 237 (355)
.++..+..+ .+.....|+.+ .+||+++|+|+|.+|+++||+| .|.+|++......+..+.+|++.++++|+||
T Consensus 147 ~~~~~~~~~----~~~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g 221 (346)
T PRK11579 147 YFESHFDRF----RPQVRQRWREQGGPGSGIWYDLAPHLLDQAIQLFG-LPVSITVDLAQLRPGAQSTDYFHAILSYPQR 221 (346)
T ss_pred EEEEEeccc----CCCCccccccCCCCCCcchhhhhhhHHHHHHHHhC-CCeEEEEEeeeecCCCCCCceEEEEEEECCe
Confidence 998775422 12223356643 6899999999999999999999 5899999776544334679999999999998
Q ss_pred cEEEEEEEEecCCCCeEEEEEeeeeEEEEecCCCC---------------C--CCceeEEEeCCCCccee-eecCCCChH
Q 018445 238 CSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQD---------------G--RHGYLVTQYGADGQSKS-MFYPFSGVT 299 (355)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~---------------~--~~~~~~~~~~~~~~~~~-~~~~~~~~~ 299 (355)
. +++..+|.......+++|+|++|++.+...... . .....+........... .....+.|.
T Consensus 222 ~-~~~~~s~~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (346)
T PRK11579 222 R-VVLHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTLVEGEERVEETLLTLPGNYP 300 (346)
T ss_pred E-EEEEEEeeecCCCCEEEEEecCceEEEcCCCccHHHHhCCCCCCCCCCCCCCccCeEEEecCCccceeeecCCCCCHH
Confidence 5 488888877655578999999999976432211 0 00011111111110111 111135688
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHchhcCCcEEec
Q 018445 300 EELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLESGSKQGALVHV 352 (355)
Q Consensus 300 ~~~~~f~~~i~~~~~~~~~~~~~~~~~~d~~~~~~i~~a~~~S~~~~g~~v~~ 352 (355)
.++++|+++|+++. ++.++.+|+++++++++|+++| +++|++|.+
T Consensus 301 ~~~~~f~~~i~~~~-------~~~~~~e~a~~~l~i~~a~~~S-a~~g~~v~l 345 (346)
T PRK11579 301 AYYAAIRDALNGDG-------ENPVPASQAIQVMELIELGIES-AKHRATLCL 345 (346)
T ss_pred HHHHHHHHHHhCCC-------CCCCCHHHHHHHHHHHHHHHHH-HhcCCEEec
Confidence 89999999999998 8899999999999999999999 699999986
No 2
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=100.00 E-value=1.6e-55 Score=405.79 Aligned_cols=330 Identities=29% Similarity=0.375 Sum_probs=271.1
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|++||||||+|.++...|++.+...++.++++++||+++++++++++ ++ ++...| +|+++||+++++|+|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~---~~--~~~~~~--~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE---EF--GIAKAY--TDLEELLADPDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH---Hc--CCCccc--CCHHHHhcCCCCCEEEEc
Confidence 56899999999888777999999877547999999999999999987 44 444344 999999999999999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCe
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDM 158 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i 158 (355)
||+..|++++++||++|||||||||++.|++|+++|+++|++ +|++++|++++||+|.++++|++|++ ||+|
T Consensus 75 tp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~------~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~v 148 (342)
T COG0673 75 TPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK------AGVKLMVGFNRRFDPAVQALKELIDSGALGEV 148 (342)
T ss_pred CCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH------cCCceeeehhhhcCHHHHHHHHHHhcCCcCce
Confidence 999999999999999999999999999999999999999999 59999999999999999999999997 9999
Q ss_pred eEEEEEEeeccCCCCCccCcccccc--ccCccccchhhHHHHHHHHHhCC-cceeEEEeeccc-CCCCCCCceEEEEEEe
Q 018445 159 MSVQVIVEGSMNSSNPYFSSSWRRN--FTGGFILDMGVHFIAGLRMITGC-EVVSVSAITSHI-DKTLPPPDNISSNFQL 234 (355)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~~~~w~~~--~~gg~l~d~g~H~id~~~~l~G~-~~~~V~a~~~~~-~~~~~~~d~~~~~l~~ 234 (355)
++++..+..++.. .+....|+.. .+||+++|+|+|.+|+++||+|. ++.+|++..... ....+.+|.+.++++|
T Consensus 149 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~l~d~giH~lD~~~~l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~ 226 (342)
T COG0673 149 VSVQASFSRDRPN--PPPPPWWRFDRADGGGALLDLGIHDLDLLRFLLGSPEPVSVSAKARNSPPGEAGVDDSASAILRF 226 (342)
T ss_pred EEEEEEeeccccc--cCCccceecccccCCCchhhhHHHHHHHHHHHcCCcchhheeeecccCCCCcccccceEEEEEEe
Confidence 9999998755433 1222345443 57799999999999999999997 688999977665 2445688999999999
Q ss_pred cCCcEEEEEEEEecCCCC-eEEEEEeeeeEEEEecCCCCCCCc-eeEEEeCCCCcceeeecCC--CChHHHHHHHHHHHH
Q 018445 235 ENGCSGVFVMVVSSRSPK-IFWRVVGMKGTLQVERGNQDGRHG-YLVTQYGADGQSKSMFYPF--SGVTEELKAFIHDIS 310 (355)
Q Consensus 235 ~~G~~~~~~~~~~~~~~~-~~~~i~G~~G~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~i~ 310 (355)
+||.......++...... ..++|+|++|++.++......... .................+. .++..++++|+++++
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~ 306 (342)
T COG0673 227 ENGVLAVSWASRTAAGGYDVRLEVYGTKGSLEVDDGNPTGELLDGRIGLDVRGGDGELLLVPRRGNPYEGELEAFADAIR 306 (342)
T ss_pred cCCceEEEEEEeeccCCcCceEEEEeccceEEeccccccccceeeeccccccCCCccccCCCcccchhHHHHHHHHHHHh
Confidence 999888888887765543 348999999999999866532211 0111111111111111121 268999999999999
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHchhcCCcEEecc
Q 018445 311 EAKKGINHVPEPRSSFLEGARDVALLEAMLESGSKQGALVHVK 353 (355)
Q Consensus 311 ~~~~~~~~~~~~~~~~~d~~~~~~i~~a~~~S~~~~g~~v~~~ 353 (355)
++. .+..+.++++.++++++++++| ..++++|.++
T Consensus 307 ~~~-------~~~~~~~~~~~~~~~~~a~~~s-~~~~~~v~~~ 341 (342)
T COG0673 307 GGG-------EPLVSGEDALKALRLAEAAYES-AKEGRTVKLA 341 (342)
T ss_pred cCC-------CCCCCHHHHHHHHHHHHHHHHh-hccCceeeCC
Confidence 997 7799999999999999999999 6999999876
No 3
>PRK10206 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.7e-54 Score=391.58 Aligned_cols=322 Identities=16% Similarity=0.199 Sum_probs=252.9
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
.+||||||+|.++...|++.+....++++|+||||+++++. .+++ ++ +.+ ..| +|+++||+++++|+|+|+|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~---~~-~~~-~~~--~~~~ell~~~~iD~V~I~t 72 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAP---IY-SHI-HFT--SDLDEVLNDPDVKLVVVCT 72 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHH---hc-CCC-ccc--CCHHHHhcCCCCCEEEEeC
Confidence 47999999999876568998865444499999999998665 4443 23 233 333 8999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCee
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMM 159 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i~ 159 (355)
|+..|++++++||++|||||||||++.|++|+++|++++++ +|+++++++++||+|.++++|++|++ ||+|+
T Consensus 73 p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~------~~~~l~v~~~~R~~p~~~~~k~li~~g~iG~i~ 146 (344)
T PRK10206 73 HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKS------KGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIV 146 (344)
T ss_pred CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH------hCCEEEEEEeeeECHHHHHHHHHHHcCCCCCeE
Confidence 99999999999999999999999999999999999999999 59999999999999999999999997 99999
Q ss_pred EEEEEEeeccCCCCCccCccccccccCccccchhhHHHHHHHHHhCCcceeEEEeecccCCCCCCCceEEEEEEecCCcE
Q 018445 160 SVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENGCS 239 (355)
Q Consensus 160 ~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~~ 239 (355)
.++..+..+ ....+ .+....+||.++|+|+|.+|+++||+| +|++|++...........+|++.++++| +|.+
T Consensus 147 ~i~~~~~~~--~~~~~---~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~~~~~~d~~~~~l~f-~~~~ 219 (344)
T PRK10206 147 EVESHFDYY--RPVAE---TKPGLPQDGAFYGLGVHTMDQIISLFG-RPDHVAYDIRSLRNKANPDDTFEAQLFY-GDLK 219 (344)
T ss_pred EEEEEeccc--CCccc---cccCCCCCceeechhHHHHHHHHHHcC-CCeEEEEEeecccCCCCCCceEEEEEEe-CCEE
Confidence 999876421 11111 111225889999999999999999999 6899998765543334578999999999 5689
Q ss_pred EEEEEEEecCCCCeEEEEEeeeeEEEEecCCCC----------CC-------CceeEEEeCCCCcc-ee-eecCCCChHH
Q 018445 240 GVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQD----------GR-------HGYLVTQYGADGQS-KS-MFYPFSGVTE 300 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~----------~~-------~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 300 (355)
+++..+|..+....+++|+|++|++..+..... .. ....+......+.. .. ...+..+|..
T Consensus 220 ~~i~~s~~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (344)
T PRK10206 220 AIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEMGDYGR 299 (344)
T ss_pred EEEEEeeeecCCCCeEEEEeccceEEEecCCccHHHHhCCCCCCCCCCCcCCCCceEEEeccCCcceeeeeCCCCCCHHH
Confidence 999999987666678999999999987533210 00 00111111112211 11 1122457999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHchhcCCcEEecc
Q 018445 301 ELKAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLESGSKQGALVHVK 353 (355)
Q Consensus 301 ~~~~f~~~i~~~~~~~~~~~~~~~~~~d~~~~~~i~~a~~~S~~~~g~~v~~~ 353 (355)
++++|+++|+++. +|.++.+++++.+++++++++|| .-.+|.+.
T Consensus 300 ~~~~f~~ai~~g~-------~p~v~~e~al~~l~iiea~~~sa--~~~~~~~~ 343 (344)
T PRK10206 300 VYDALYQTLTHGA-------PNYVKESEVLTNLEILERGFEQA--SPATVTLA 343 (344)
T ss_pred HHHHHHHHHhCCC-------CCCCCHHHHHHHHHHHHHHHhcC--Cccceecc
Confidence 9999999999998 88999999999999999999995 55556553
No 4
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.3e-47 Score=326.97 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=259.1
Q ss_pred CCceEEEEecccccchhccchhhhcC--CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEIS--DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~--~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
+.+||||+|||.|+.. |+.+|...+ + .+|+||+|++.++++++++.. .+|. ++.| .+||||++++++|+|+
T Consensus 5 ~~ir~Gi~g~g~ia~~-f~~al~~~p~s~-~~Ivava~~s~~~A~~fAq~~--~~~~-~k~y--~syEeLakd~~vDvVy 77 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARD-FVRALHTLPESN-HQIVAVADPSLERAKEFAQRH--NIPN-PKAY--GSYEELAKDPEVDVVY 77 (351)
T ss_pred ceeEEEEeehhHHHHH-HHHHhccCcccC-cEEEEEecccHHHHHHHHHhc--CCCC-Cccc--cCHHHHhcCCCcCEEE
Confidence 3689999999999987 899998766 5 899999999999999999832 2332 4555 9999999999999999
Q ss_pred EecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hC
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IG 156 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG 156 (355)
|++|+.+|+++++.+|..|||||||||+|.|.+|+++|+++|++ +|+.+|.|..+||.|.+.++|++|.+ ||
T Consensus 78 i~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~------rgv~~meg~~~R~~P~~~~lke~l~~~~~G 151 (351)
T KOG2741|consen 78 ISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEA------RGVFFMEGLWWRFFPRYAKLKELLSSGVLG 151 (351)
T ss_pred eCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHH------cCcEEEeeeeeecCcHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999 79999999999999999999999997 99
Q ss_pred CeeEEEEEEeeccCCC-CCccCccccccccCccccchhhHHHHHHHHH--hCCcceeEEEeecccCCCCCCCceEEEEEE
Q 018445 157 DMMSVQVIVEGSMNSS-NPYFSSSWRRNFTGGFILDMGVHFIAGLRMI--TGCEVVSVSAITSHIDKTLPPPDNISSNFQ 233 (355)
Q Consensus 157 ~i~~v~~~~~~~~~~~-~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l--~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~ 233 (355)
+|.++.+.++.++... .+....-|.+..|+|.++|+|++.+-+.+|. ++..|+...-.+.. .....++|++.+.+.
T Consensus 152 dvk~v~~~~~f~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i~~~~~~~~f~~~p~~~~~~g~v-~n~~~v~~s~~~~l~ 230 (351)
T KOG2741|consen 152 DVKSVEVEFGFPFPEDELPHKSRLRTGLLGGGALGDLGIYPIQAALWVNNFQEPPEVIAVDGRV-LNSEGVDDSVGAILD 230 (351)
T ss_pred cceEEEEecCCCcchhhcccccchheecccCceehhhHHHHHHHHHHHHHhcCCcceeecCccc-ccCCCcccccceEEE
Confidence 9999999887665421 1112234666688999999999999999999 77444433333333 333458999999999
Q ss_pred ecCCcEEEEEEEEecCCCCeEEEEEeeeeEEEEecCCCCCCCceeEEEeCCCCcc--------eeeecCCCChHHHHHHH
Q 018445 234 LENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQDGRHGYLVTQYGADGQS--------KSMFYPFSGVTEELKAF 305 (355)
Q Consensus 234 ~~~G~~~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~f 305 (355)
|++|..+.+.+++.... .....|.|++|++.+. +.+..............+.+ ........++..+..++
T Consensus 231 f~~~~~~~~~cSf~~~l-~n~~~i~GtkG~~~l~-d~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~n~~~m~~E~~~v 308 (351)
T KOG2741|consen 231 FTGGRTALILCSFLEKL-TNEAVITGTKGSLKLL-DYWIPTKETLSRFGGREKEFPLLPGEDVDTHYDNEAGMVYEAERV 308 (351)
T ss_pred eCCCceEEEEEehhhhC-CCceEEEecccceeee-eccccceeeeeeecCCCccccCCCCCCcccccccchhhHHHHHHH
Confidence 99999999999997644 3567889999999999 43321111111111111111 11222335789999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHchhcCC
Q 018445 306 IHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLESGSKQG 347 (355)
Q Consensus 306 ~~~i~~~~~~~~~~~~~~~~~~d~~~~~~i~~a~~~S~~~~g 347 (355)
+++|+.+..+ .+.....+++..+.+++++.++ ...+
T Consensus 309 ~~~I~~~~~e-----a~~~~~~~S~~~~~i~D~i~~q-i~v~ 344 (351)
T KOG2741|consen 309 RECIKKGGKE-----ADDIPHAESLKLMLIVDAIRRQ-IGVV 344 (351)
T ss_pred HHHHHhcCcC-----CCCCCchHHHHHHHHHHHHHHH-hccc
Confidence 9999988744 6777889999999999999999 5443
No 5
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=240.70 Aligned_cols=331 Identities=27% Similarity=0.418 Sum_probs=240.0
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|..-|||+|+|..++. .+|.+++.+ ++|.|++.|...-+++.++ .. .+... ++.++|+|.+.++|.|.|.
T Consensus 1 m~Pgv~v~GTg~~arv-~iP~l~e~~--f~v~A~w~Rt~~ea~a~aa---~~--~v~~~--t~~~deiLl~~~vdlv~i~ 70 (367)
T KOG2742|consen 1 MSPGVGVFGTGIFARV-LIPLLKEEG--FEVKAIWGRTKTEAKAKAA---EM--NVRKY--TSRLDEILLDQDVDLVCIS 70 (367)
T ss_pred CCCceeEeccChhHhh-hhhhhhhcc--chHhhhhchhhhHHHHhhh---cc--chhhc--cccchhhhccCCcceeEec
Confidence 5556999999999987 599999887 9999999994444333332 11 33322 3789999999999999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCe
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDM 158 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i 158 (355)
.|+..|++++.+|+..||||.||||. .++++++.+.+++.. +.....+++++||.|.+..+|+.|++ .|++
T Consensus 71 lpp~~~~eI~~kal~~Gk~Vvcek~a-~~~d~~k~~~~~~~s------~~L~~lv~~~lrflp~f~~~k~~ie~i~~g~v 143 (367)
T KOG2742|consen 71 LPPPLHAEIVVKALGIGKHVVCEKPA-TNLDAAKMVVALAYS------PKLMSLVGHVLRFLPAFVTAKELIEEIYVGEV 143 (367)
T ss_pred cCCccceeeeeccccCCceEEeccCC-cchhhhhhHHHHhhc------hhHHHHhhhhhhhhHHHHHHHHHHHhccCCCe
Confidence 99999999999999999999999999 899999999988877 69999999999999999999999998 8988
Q ss_pred eEEEEEEeeccCCCCCccCcccccc--ccCccccchhhHHHHHHHHHhCCcceeEEEeecc-cCCCCCC--------Cce
Q 018445 159 MSVQVIVEGSMNSSNPYFSSSWRRN--FTGGFILDMGVHFIAGLRMITGCEVVSVSAITSH-IDKTLPP--------PDN 227 (355)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~~~~w~~~--~~gg~l~d~g~H~id~~~~l~G~~~~~V~a~~~~-~~~~~~~--------~d~ 227 (355)
.....++.....-. + ..+|..+ .+||+++|+|+|.||++..|+|.+...+.+..+. ..+..+. +|.
T Consensus 144 v~~~~~v~~~~l~~-k--~~~W~~~p~~ggG~l~d~Gsh~Idl~~~L~G~~~~~~~gl~~~~~~~~~ei~g~~~I~~~~~ 220 (367)
T KOG2742|consen 144 VRCDVRVDRGRLFR-K--SYNWKCDPLMGGGFLYDMGSHLIDLLTSLLGTPASVVHGLLSQRTRQPLEIEGIRRITLHDF 220 (367)
T ss_pred eeeeeeeecceecc-c--CCccccccccCCceeecchHHHHHHHHHHhCCchhhhhhhhhhhccCchhhcccceeeecch
Confidence 88887765321111 1 2489987 8999999999999999999999544444443332 2222223 344
Q ss_pred EEEEEEecCCcEEEEEEEEecCCCCeEEEEEeeeeEEEEecCCCCCCC--ceeEEEeCCCCcceeeec---CCCChHHHH
Q 018445 228 ISSNFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGNQDGRH--GYLVTQYGADGQSKSMFY---PFSGVTEEL 302 (355)
Q Consensus 228 ~~~~l~~~~G~~~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 302 (355)
+..+....+|.+.+...+.. +.. .++.|+|++|++........... ..........+......+ ...+...+.
T Consensus 221 ~~~~~l~~~~i~~t~~l~~~-~~~-~~~~I~Gs~Gt~~~~g~DpqE~~l~~~m~~~~~~~g~d~~~~Y~~g~~~~V~a~~ 298 (367)
T KOG2742|consen 221 CLFQMLPIGGILSTVALSCG-PGF-MEVRIVGSKGTLVVRGGDPQEEQLHGDMLPVSEGGGTDRPILYLKGTLWMVPAER 298 (367)
T ss_pred hhhceeeccceEEeeecccC-Ccc-eEEEEEecCceEEEecCCcchhhhhccccccCCCCCccceeEeecCccccccHHH
Confidence 55556666888887777777 343 78999999999999987732211 111112222222222222 122345556
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHchhcCCcEEeccCC
Q 018445 303 KAFIHDISEAKKGINHVPEPRSSFLEGARDVALLEAMLESGSKQGALVHVKKF 355 (355)
Q Consensus 303 ~~f~~~i~~~~~~~~~~~~~~~~~~d~~~~~~i~~a~~~S~~~~g~~v~~~~~ 355 (355)
+.|........ -...+..+..+++|++....+.+++..| +++|.|+.|+++
T Consensus 299 ~~f~~~~s~ks-~~~tp~~~~~~F~d~l~~a~V~~aie~s-~k~gq~~~Vek~ 349 (367)
T KOG2742|consen 299 DAFHNPESTKS-WVQTPVSMYATFEDGLYVACVVAAIESS-AKNGQVVAVEKI 349 (367)
T ss_pred HhhcCCCCccc-cccccccchhhhhhhhHHHHHHHHHhcc-cCCCceEEeeec
Confidence 66655443222 1112345667899999999999999999 699999998753
No 6
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.97 E-value=5.7e-29 Score=224.19 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=166.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe-
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV- 80 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~- 80 (355)
++||||||+| +|.. |++++.+.+++++|+||||+++++++++++ ++ +++ .| +|++||+++.++|+|+|+
T Consensus 3 ~~rVgViG~~-~G~~-h~~al~~~~~~~eLvaV~d~~~erA~~~A~---~~--gi~-~y--~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGTR-FGQF-YLAAFAAAPERFELAGILAQGSERSRALAH---RL--GVP-LY--CEVEELPDDIDIACVVVRS 72 (343)
T ss_pred CcEEEEEeHH-HHHH-HHHHHHhCCCCcEEEEEEcCCHHHHHHHHH---Hh--CCC-cc--CCHHHHhcCCCEEEEEeCC
Confidence 5899999995 7875 999999887349999999999999999988 45 555 44 999999998888888884
Q ss_pred -cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH-----
Q 018445 81 -LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE----- 154 (355)
Q Consensus 81 -tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~----- 154 (355)
+|+..|++++++||++|||||||||++ .+|+++|+++|++ +|+++++ .||.|.++.+|++|++
T Consensus 73 ~~P~~~H~e~a~~aL~aGkHVL~EKPla--~~Ea~el~~~A~~------~g~~l~v---~~f~p~~~~vr~~i~~~~~i~ 141 (343)
T TIGR01761 73 AIVGGQGSALARALLARGIHVLQEHPLH--PRDIQDLLRLAER------QGRRYLV---NTFYPHLPAVRRFIEYARQLH 141 (343)
T ss_pred CCCCccHHHHHHHHHhCCCeEEEcCCCC--HHHHHHHHHHHHH------cCCEEEE---EecCHHHHHHHHHHHcchhHh
Confidence 478999999999999999999999998 7999999999999 5999998 4699999999999975
Q ss_pred -hCCeeEEEEEEeeccCCCCCccCccccccccCccccchhhHHHHHHHHHhC-CcceeEEEeecccCCCCCCCceEEEEE
Q 018445 155 -IGDMMSVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMITG-CEVVSVSAITSHIDKTLPPPDNISSNF 232 (355)
Q Consensus 155 -iG~i~~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l~G-~~~~~V~a~~~~~~~~~~~~d~~~~~l 232 (355)
+|++..++..+ +-+.++|+ +|++..++| ..+..+.+.+.... ..+.-.+.+
T Consensus 142 ~~~~~~~i~~~~-------------------~~~v~~dl----ldil~~~lgg~~~~~i~~~~~~~~----~~~f~~~~~ 194 (343)
T TIGR01761 142 HRRGPRFVEATC-------------------GVQVLYST----LDILARALGGVGPWSLESPGGDLS----PFPMRGLQG 194 (343)
T ss_pred hcCCCCcceeec-------------------CCccccch----HHHHHHHhCCCCceEEEeeccccC----CCCceEEEE
Confidence 44444444332 33455665 888888888 67777777662111 112444555
Q ss_pred EecCCcEEEEEEE-EecCCC-C------eEEEEEeeeeEEEEecCCC
Q 018445 233 QLENGCSGVFVMV-VSSRSP-K------IFWRVVGMKGTLQVERGNQ 271 (355)
Q Consensus 233 ~~~~G~~~~~~~~-~~~~~~-~------~~~~i~G~~G~i~~~~~~~ 271 (355)
...+ ..+++..- +..+.. + .++.+..+.|.+.+.+...
T Consensus 195 ~i~~-~p~~l~~~n~l~~~dpD~~~~~~hri~~g~~~G~L~L~~~~G 240 (343)
T TIGR01761 195 VIAG-VPLSLNLQNYLDPADPDGHSLIMHRLSLGTPEGHLSLVSSHG 240 (343)
T ss_pred EECC-ceEEEEEecccCCCCCcchhhhheeEEEeccCcEEEEecCCC
Confidence 5533 33444333 222222 1 6888888888888887663
No 7
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.96 E-value=9.9e-30 Score=198.12 Aligned_cols=120 Identities=25% Similarity=0.338 Sum_probs=108.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||||||+|.+|+. |++.+.+..++++++++||+++++++.+++ ++ +++ .| +|+++|++++++|+|+|+||
T Consensus 1 i~v~iiG~G~~g~~-~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~--~~~-~~--~~~~~ll~~~~~D~V~I~tp 71 (120)
T PF01408_consen 1 IRVGIIGAGSIGRR-HLRALLRSSPDFEVVAVCDPDPERAEAFAE---KY--GIP-VY--TDLEELLADEDVDAVIIATP 71 (120)
T ss_dssp EEEEEESTSHHHHH-HHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HT--TSE-EE--SSHHHHHHHTTESEEEEESS
T ss_pred CEEEEECCcHHHHH-HHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hh--ccc-ch--hHHHHHHHhhcCCEEEEecC
Confidence 69999999999986 888888774459999999999999999876 34 555 43 99999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEe
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAE 137 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~ 137 (355)
+..|++++++|+++||||+||||++.+++++++|.+++++ +|+.++|||
T Consensus 72 ~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~------~~~~~~Vg~ 120 (120)
T PF01408_consen 72 PSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE------KGVKVMVGY 120 (120)
T ss_dssp GGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH------HTSCEEEE-
T ss_pred CcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH------hCCEEEEeC
Confidence 9999999999999999999999999999999999999999 499999986
No 8
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.87 E-value=1.9e-21 Score=171.42 Aligned_cols=224 Identities=15% Similarity=0.073 Sum_probs=157.4
Q ss_pred CceEEEEecccccchhccchhhh-cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 2 APRIAILGAGIFVKTQYIPRLAE-ISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~-~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
++||||||+|.||+. |.+.|.+ .++ ++|+++||+++++++.+++ ++ +....+ +++++|+++ +|+|++|
T Consensus 6 ~irIGIIG~G~IG~~-~a~~L~~~~~~-~el~aV~dr~~~~a~~~a~---~~--g~~~~~--~~~eell~~--~D~Vvi~ 74 (271)
T PRK13302 6 ELRVAIAGLGAIGKA-IAQALDRGLPG-LTLSAVAVRDPQRHADFIW---GL--RRPPPV--VPLDQLATH--ADIVVEA 74 (271)
T ss_pred eeEEEEECccHHHHH-HHHHHHhcCCC-eEEEEEECCCHHHHHHHHH---hc--CCCccc--CCHHHHhcC--CCEEEEC
Confidence 479999999999986 8888886 355 8999999999999888776 33 322233 899999865 8999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEE--EecccCchHHHHHHHHHHH--hC
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAV--AENYRFEPAFVECKKLIAE--IG 156 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v--~~~~r~~p~~~~~k~~i~~--iG 156 (355)
+|+..|.+++.++|++||||+|++.. +++++++|.+++++ +|+.+++ |+..+| +.++. +|
T Consensus 75 tp~~~h~e~~~~aL~aGk~Vi~~s~g--al~~~~~L~~~A~~------~g~~l~v~sGa~~g~--------d~l~~g~iG 138 (271)
T PRK13302 75 APASVLRAIVEPVLAAGKKAIVLSVG--ALLRNEDLIDLARQ------NGGQIIVPTGALLGL--------DAVTAAAEG 138 (271)
T ss_pred CCcHHHHHHHHHHHHcCCcEEEecch--hHHhHHHHHHHHHH------cCCEEEEcchHHHhH--------HHHHHHHcC
Confidence 99999999999999999999999743 45688999999999 5899988 555555 45664 99
Q ss_pred CeeEEEEEEeeccCCCCCccCccccccccCccccchhhHHHHHHHHHhCCcceeEEE-eecccCCCCCCCceE-----EE
Q 018445 157 DMMSVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMITGCEVVSVSA-ITSHIDKTLPPPDNI-----SS 230 (355)
Q Consensus 157 ~i~~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l~G~~~~~V~a-~~~~~~~~~~~~d~~-----~~ 230 (355)
++..+++....+ +..|. |+.+++...|++|.++ +++.+.- .........|..=|. .+
T Consensus 139 ~~~~v~~~trkp--------p~~~~----g~~~~~~~~~dld~~~-----~~~~~f~G~a~ea~~~fP~n~Nvaaa~ala 201 (271)
T PRK13302 139 TIHSVKMITRKP--------PDGLK----GAPFLVTNNIDIDGLT-----EPLLLFEGSAREAAKGFPANLNVAVALSLA 201 (271)
T ss_pred CceEEEEEEecC--------chHhc----cChhhhhcCCCccccc-----cceEEEEecHHHHHHHCCcchhHHHHHHHh
Confidence 999998874321 13453 5566677788888653 2222221 211111000111111 11
Q ss_pred EEEecCCcEEEEEEEEecCCCCeEEEEEeeeeEEEEecCC
Q 018445 231 NFQLENGCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGN 270 (355)
Q Consensus 231 ~l~~~~G~~~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~ 270 (355)
.+-| +...+.+..+-....+..++++.|+-|.+.+.-.+
T Consensus 202 ~~g~-d~t~v~l~adP~~~~n~H~i~~~g~~g~~~~~~~~ 240 (271)
T PRK13302 202 GIGP-DRTTLEIWADPGVTRNVHRIEVDADSARFSMTIEN 240 (271)
T ss_pred ccCc-cceEEEEEECCCCCCceEEEEEEeceEEEEEEEEc
Confidence 2223 33666666655554556899999999999888544
No 9
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.84 E-value=2.4e-20 Score=164.12 Aligned_cols=227 Identities=14% Similarity=0.121 Sum_probs=163.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||||||||.||+. ++..+.+.++ ++++++|+++... +...+ ....++. . ++|++++ ++++|+|++|||
T Consensus 2 ~rVgIiG~G~iG~~-~~~~l~~~~~-~~l~~v~~~~~~~-~~~~~---~~~~~~~-~--~~d~~~l--~~~~DvVve~t~ 70 (265)
T PRK13303 2 MKVAMIGFGAIGAA-VLELLEHDPD-LRVDWVIVPEHSI-DAVRR---ALGEAVR-V--VSSVDAL--PQRPDLVVECAG 70 (265)
T ss_pred cEEEEECCCHHHHH-HHHHHhhCCC-ceEEEEEEcCCCH-HHHhh---hhccCCe-e--eCCHHHh--ccCCCEEEECCC
Confidence 79999999999986 8999988776 8999999765332 22222 1111222 2 2889998 577999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCC-HHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCee
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAAN-ISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMM 159 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~-~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i~ 159 (355)
+..|.+++.++|++||||+||||.+.+ .+...+|.++|++ +|+.+++ .+.+...+++++. +|.+.
T Consensus 71 ~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~------~g~~l~v------~sga~gg~d~l~~~~~g~~~ 138 (265)
T PRK13303 71 HAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEA------GGARLHL------LSGAIGGIDALAAAKEGGLD 138 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHH------CCCEEEE------eChHhhCHHHHHHHHhCCce
Confidence 999999999999999999999999876 5557889999999 5888877 6667777888886 89999
Q ss_pred EEEEEEeeccCCCCCccCccccccccCccccchhhHHHHHHHHHhCCcceeEEEeecccCCCCCCCceEEEEEEecC---
Q 018445 160 SVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMITGCEVVSVSAITSHIDKTLPPPDNISSNFQLEN--- 236 (355)
Q Consensus 160 ~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~--- 236 (355)
.+++....+ +..|+.+ .....+| +.++.| +.....+.........+..+++.+.+.+.+
T Consensus 139 ~v~~~~~k~--------p~~~~~~--------~~~~~~d-l~~~~~-~~~~f~G~a~ea~~~~p~n~nvaaa~~la~~g~ 200 (265)
T PRK13303 139 EVTYTGRKP--------PKSWRGT--------PAEQLCD-LDALTE-PTVIFEGSAREAARLFPKNANVAATVALAGLGL 200 (265)
T ss_pred EEEEEEecC--------hhHhCcC--------hhHhccc-cccccc-CeEEEEeCHHHHHHHCCchhhHHHHHHHhccCc
Confidence 998853211 1256532 1234677 667888 666666665543333345666666555542
Q ss_pred -CcEEEEEEEEecCCCCeEEEEEeeeeEEEEecCC
Q 018445 237 -GCSGVFVMVVSSRSPKIFWRVVGMKGTLQVERGN 270 (355)
Q Consensus 237 -G~~~~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~ 270 (355)
.+.+.+..+-.......++++.|+-|.+.+...+
T Consensus 201 d~~~v~~~adp~~~~n~h~i~~~g~~g~~~~~~~~ 235 (265)
T PRK13303 201 DRTRVELIADPAVTRNVHEIEARGAFGEFEFEMSG 235 (265)
T ss_pred cceEEEEEECCCCCCceEEEEEEeccEEEEEEEeC
Confidence 2666665555544555899999999999888544
No 10
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.81 E-value=1.2e-19 Score=159.03 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=111.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHH-HHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAK-SAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
++||||||+|.+|.. |+..+.+.++ ++++++||+++++.. ..++ ++ +++..+ +++++|++++++|+|+++
T Consensus 1 klrVAIIG~G~IG~~-h~~~ll~~~~-~elvaV~d~d~es~~la~A~---~~--Gi~~~~--~~~e~ll~~~dIDaV~ia 71 (285)
T TIGR03215 1 KVKVAIIGSGNIGTD-LMYKLLRSEH-LEMVAMVGIDPESDGLARAR---EL--GVKTSA--EGVDGLLANPDIDIVFDA 71 (285)
T ss_pred CcEEEEEeCcHHHHH-HHHHHHhCCC-cEEEEEEeCCcccHHHHHHH---HC--CCCEEE--CCHHHHhcCCCCCEEEEC
Confidence 479999999999986 7777776665 999999999998754 3333 34 555444 789999999999999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCC--------CCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHH
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAA--------ANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLI 152 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a--------~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i 152 (355)
||+..|.+++.+++++||||+||||++ .+.+++. +. .++.+..+.+.+..|....++++.
T Consensus 72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN~~~~~------~~------~~~~iv~c~~~atip~~~al~r~~ 139 (285)
T TIGR03215 72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHL------DA------PNVNMVTCGGQATIPIVAAISRVA 139 (285)
T ss_pred CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcCHHHHh------cC------cCCCEEEcCcHHHHHHHHHHHHhh
Confidence 999999999999999999999999999 6655443 22 356688899999999999999998
Q ss_pred HH-hCCee
Q 018445 153 AE-IGDMM 159 (355)
Q Consensus 153 ~~-iG~i~ 159 (355)
+. ++++.
T Consensus 140 d~~~~~iv 147 (285)
T TIGR03215 140 PVHYAEIV 147 (285)
T ss_pred ccccEEEE
Confidence 75 44433
No 11
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=99.79 E-value=2.3e-18 Score=146.93 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred EEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCC
Q 018445 29 VSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAA 108 (355)
Q Consensus 29 ~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~ 108 (355)
++|+++||+++++++.+++ ++ ++. .| +|+++|++ +++|+|+||||+..|.+++.++|++||||+||||.+.
T Consensus 2 ~eLvaV~D~~~e~a~~~a~---~~--g~~-~~--~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAl 72 (229)
T TIGR03855 2 FEIAAVYDRNPKDAKELAE---RC--GAK-IV--SDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGAL 72 (229)
T ss_pred eEEEEEECCCHHHHHHHHH---Hh--CCc-eE--CCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCccc
Confidence 7999999999999999887 34 443 33 89999998 5799999999999999999999999999999999988
Q ss_pred -CHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCeeEEEEEEe
Q 018445 109 -NISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMMSVQVIVE 166 (355)
Q Consensus 109 -~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i~~v~~~~~ 166 (355)
+.+++++|.+++++ +|++++++ +.+...++.|+. +|.+..++++..
T Consensus 73 ad~e~~~~l~~aA~~------~g~~l~i~------sGai~g~d~l~a~~ig~~~~V~i~~~ 121 (229)
T TIGR03855 73 ADRELRERLREVARS------SGRKVYIP------SGAIGGLDALKAASLGRIERVVLTTT 121 (229)
T ss_pred CCHHHHHHHHHHHHh------cCCEEEEC------hHHHHHHHHHHhcccCCceEEEEEEe
Confidence 78999999999999 59999998 588999999986 999999998754
No 12
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.78 E-value=3.9e-18 Score=150.25 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=118.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||||||+|.||.. +...+.+.+.++++++++|+++++++.+++ ++ +.. .| +++++|+ +++|+|++|+|
T Consensus 2 mrIgIIG~G~iG~~-ia~~l~~~~~~~elv~v~d~~~~~a~~~a~---~~--~~~-~~--~~~~ell--~~~DvVvi~a~ 70 (265)
T PRK13304 2 LKIGIVGCGAIASL-ITKAILSGRINAELYAFYDRNLEKAENLAS---KT--GAK-AC--LSIDELV--EDVDLVVECAS 70 (265)
T ss_pred CEEEEECccHHHHH-HHHHHHcCCCCeEEEEEECCCHHHHHHHHH---hc--CCe-eE--CCHHHHh--cCCCEEEEcCC
Confidence 79999999999986 888887653238999999999999988776 33 332 23 8999999 45999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCC-CHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCee
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAA-NISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMM 159 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i~ 159 (355)
+..|.+++.+++++||||+|++|.+. +.+.+++|.++|++ +|+.+++ .+.....++.|+. +|++.
T Consensus 71 ~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~------~g~~l~v------~sga~~g~d~i~a~~~G~i~ 138 (265)
T PRK13304 71 VNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKE------NNCKIYL------PSGAIVGLDGIKAASLGEIK 138 (265)
T ss_pred hHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHH------cCCEEEE------eCchHHhHHHHHHHhcCCcc
Confidence 99999999999999999999999775 78889999999999 5888877 3455666788875 99999
Q ss_pred EEEEEEe
Q 018445 160 SVQVIVE 166 (355)
Q Consensus 160 ~v~~~~~ 166 (355)
.+.+...
T Consensus 139 ~V~~~~~ 145 (265)
T PRK13304 139 SVTLTTR 145 (265)
T ss_pred EEEEEEe
Confidence 9998754
No 13
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.77 E-value=3e-18 Score=156.29 Aligned_cols=151 Identities=21% Similarity=0.123 Sum_probs=116.1
Q ss_pred CCceEEEEecccccchhccchhhhc--------CCeEEEEEEEeCC----------HHHHHHHHHHHhhhcCCccc---c
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI--------SDLVSLKFIWSRS----------EESAKSAAEVARKHFADVEC---V 59 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~--------~~~~~vvai~d~~----------~~~~~~~~~~~~~~~~~~~~---~ 59 (355)
|++||||+|+|.+|.. +++.|.+. +-+++|+++||++ .+++..+.+ ... .... .
T Consensus 1 m~i~V~IiG~G~VG~~-~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~---~~~-~~~~~~~~ 75 (341)
T PRK06270 1 MEMKIALIGFGGVGQG-VAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKE---ETG-KLADYPEG 75 (341)
T ss_pred CeEEEEEECCCHHHHH-HHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHh---ccC-CcccCccc
Confidence 8999999999999986 88888754 2149999999963 444444333 221 1110 0
Q ss_pred ccCcchhhhhcCCCccEEEEecCCccc-----HHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHhhccCCCCCCCCe
Q 018445 60 WGDNGLEQIIKEDSILGVAVVLAGQAQ-----VDTSLKLLKAGKHVIQE--KPAAANISEIENALSRYNSICPDPPGQPI 132 (355)
Q Consensus 60 ~~~~~~~ell~~~~~D~V~I~tp~~~H-----~~~~~~al~~GkhVl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~~~~ 132 (355)
..+.+++++++++++|+|+++||+..| ++++++||++||||+|+ ||++.+. .+|.++|++ +|+.
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~---~eL~~~A~~------~g~~ 146 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAY---KELKELAKK------NGVR 146 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhH---HHHHHHHHH------cCCE
Confidence 012589999999999999999999888 79999999999999996 8999866 478889999 4776
Q ss_pred EE-EEecccCchHHHHHHHHHHHhCCeeEEEEEEe
Q 018445 133 WA-VAENYRFEPAFVECKKLIAEIGDMMSVQVIVE 166 (355)
Q Consensus 133 ~~-v~~~~r~~p~~~~~k~~i~~iG~i~~v~~~~~ 166 (355)
++ .+...++.|.++.+++++.. |+|..++..+.
T Consensus 147 ~~~ea~v~~glPii~~l~~~l~g-~~I~~I~GIln 180 (341)
T PRK06270 147 FRYEATVGGAMPIINLAKETLAG-NDIKSIKGILN 180 (341)
T ss_pred EEEeeeeeechhHHHHHHhhccc-CceEEEEEEEe
Confidence 75 48999999999999999875 55555555544
No 14
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.77 E-value=1.7e-18 Score=152.12 Aligned_cols=136 Identities=19% Similarity=0.232 Sum_probs=114.5
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHH-HHHHHHhhhcCCccccccCcchhhhhcC---CCccEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAK-SAAEVARKHFADVECVWGDNGLEQIIKE---DSILGV 77 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ell~~---~~~D~V 77 (355)
++||||||+|.+|.. |+..+.+.++ ++++++||+++++.. +.++ ++ +++..+ +++++|+++ +++|+|
T Consensus 4 klrVAIIGtG~IGt~-hm~~l~~~~~-velvAVvdid~es~gla~A~---~~--Gi~~~~--~~ie~LL~~~~~~dIDiV 74 (302)
T PRK08300 4 KLKVAIIGSGNIGTD-LMIKILRSEH-LEPGAMVGIDPESDGLARAR---RL--GVATSA--EGIDGLLAMPEFDDIDIV 74 (302)
T ss_pred CCeEEEEcCcHHHHH-HHHHHhcCCC-cEEEEEEeCChhhHHHHHHH---Hc--CCCccc--CCHHHHHhCcCCCCCCEE
Confidence 689999999999986 7877877665 999999999987532 3343 34 665544 899999998 889999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEEEecCCC--------CCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHH
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVIQEKPAA--------ANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECK 149 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl~EKP~a--------~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k 149 (355)
+++||+..|.+++..++++||||++|||.+ .+.++. ... .++.+..+.+.++.|....++
T Consensus 75 f~AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~------~~~------~~~~iia~p~~ati~~v~Al~ 142 (302)
T PRK08300 75 FDATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH------LDA------PNVNMVTCGGQATIPIVAAVS 142 (302)
T ss_pred EECCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHH------hcc------cCCCEEECccHHHHHHHHHhc
Confidence 999999999999999999999999999999 888765 222 366799999999999999999
Q ss_pred HHHHH--hCCee
Q 018445 150 KLIAE--IGDMM 159 (355)
Q Consensus 150 ~~i~~--iG~i~ 159 (355)
. +.+ +|+|.
T Consensus 143 ~-v~~~~~~eIv 153 (302)
T PRK08300 143 R-VAPVHYAEIV 153 (302)
T ss_pred c-cCcCceeeee
Confidence 9 665 78877
No 15
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.76 E-value=1.1e-18 Score=163.73 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=116.8
Q ss_pred CceEEEEecccccchhccchhhhcC--------CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEIS--------DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDS 73 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~--------~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~ 73 (355)
++||||||+|.+|.. ++..|.++. .+++|++|||+++++.+.+. . ++. .. ++|+++++++++
T Consensus 3 ~i~VgiiG~G~VG~~-~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~-~~~-~~--~~d~~~ll~d~~ 72 (426)
T PRK06349 3 PLKVGLLGLGTVGSG-VVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L-PGI-LL--TTDPEELVNDPD 72 (426)
T ss_pred eEEEEEEeeCHHHHH-HHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C-ccc-ce--eCCHHHHhhCCC
Confidence 589999999999986 777765432 24899999999987754221 1 121 12 389999999999
Q ss_pred ccEEEEecCC-cccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeE-EEEecccCchHHHHHHHH
Q 018445 74 ILGVAVVLAG-QAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIW-AVAENYRFEPAFVECKKL 151 (355)
Q Consensus 74 ~D~V~I~tp~-~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~-~v~~~~r~~p~~~~~k~~ 151 (355)
+|+|+++|++ ..|++++++||++||||+|||| +....++++|.++|++ +|+.+ +.+...++.|.++.+++.
T Consensus 73 iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK-~~~a~~~~eL~~lA~~------~gv~l~fEasV~ggiPii~~l~~~ 145 (426)
T PRK06349 73 IDIVVELMGGIEPARELILKALEAGKHVVTANK-ALLAVHGAELFAAAEE------KGVDLYFEAAVAGGIPIIKALREG 145 (426)
T ss_pred CCEEEECCCCchHHHHHHHHHHHCCCeEEEcCH-HHHHHHHHHHHHHHHH------cCCcEEEEEEeeccCchHHHHHhh
Confidence 9999999876 6899999999999999999988 6788999999999999 47754 568889999999999999
Q ss_pred HHHhCCeeEEEEEEe
Q 018445 152 IAEIGDMMSVQVIVE 166 (355)
Q Consensus 152 i~~iG~i~~v~~~~~ 166 (355)
+.. ++|..+...+.
T Consensus 146 l~~-~~I~~I~GIln 159 (426)
T PRK06349 146 LAA-NRITRVMGIVN 159 (426)
T ss_pred ccc-CCeeEEEEEEe
Confidence 875 44544444443
No 16
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.76 E-value=1.3e-17 Score=168.19 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=125.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEE------------EEEEEeCCHHHHHHHHHHHhhhcCCccc-cccCcchhhhhc
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVS------------LKFIWSRSEESAKSAAEVARKHFADVEC-VWGDNGLEQIIK 70 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~------------vvai~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ell~ 70 (355)
||+|||+|.+|.. |+..|.+.++ ++ +++|||+++++++++++. ++++.. ...++|+++|++
T Consensus 571 rIlVLGAG~VG~~-~a~~La~~~~-~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~----~~~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 571 NVLILGAGRVCRP-AAEYLASVKT-ISYYGDDSEEPTDVHVIVASLYLKDAKETVEG----IENAEAVQLDVSDSESLLK 644 (1042)
T ss_pred cEEEECCCHHHHH-HHHHHHhCcC-ccccccccccccccEEEEECCCHHHHHHHHHh----cCCCceEEeecCCHHHHHH
Confidence 8999999999986 9999987765 55 789999999999988762 233211 111278888887
Q ss_pred C-CCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHH--
Q 018445 71 E-DSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVE-- 147 (355)
Q Consensus 71 ~-~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~-- 147 (355)
. .++|+|++++|+..|.+++++|+++||||++|| .+.+++++|.+.|+++ |+.+++++. |+|.+..
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek---y~~~e~~~L~e~Ak~A------GV~~m~e~G--lDPGid~~l 713 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS---YVSEEMSALDSKAKEA------GITILCEMG--LDPGIDHMM 713 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc---CCHHHHHHHHHHHHHc------CCEEEECCc--cCHHHHHHH
Confidence 3 349999999999999999999999999999999 8899999999999995 999999999 9999999
Q ss_pred HHHHHHH----hCCeeEEEEEEee
Q 018445 148 CKKLIAE----IGDMMSVQVIVEG 167 (355)
Q Consensus 148 ~k~~i~~----iG~i~~v~~~~~~ 167 (355)
++++|++ +|+|.+++.++++
T Consensus 714 A~~~Id~~~~~~GkI~s~~s~~GG 737 (1042)
T PLN02819 714 AMKMIDDAHERGGKVKSFTSYCGG 737 (1042)
T ss_pred HHHHHHhhcccCCcEEEEEEEEcC
Confidence 8899987 4999999998865
No 17
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.72 E-value=2.3e-17 Score=144.75 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=119.0
Q ss_pred CceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
+|||+|||+ |.||+. ++..+...++ ++|+++||+++++.... . .. ++. . ++|++++++ ++|+|+.+
T Consensus 1 ~mkV~IiG~~G~mG~~-i~~~l~~~~~-~elvav~d~~~~~~~~~-~---~~--~i~-~--~~dl~~ll~--~~DvVid~ 67 (257)
T PRK00048 1 MIKVAVAGASGRMGRE-LIEAVEAAED-LELVAAVDRPGSPLVGQ-G---AL--GVA-I--TDDLEAVLA--DADVLIDF 67 (257)
T ss_pred CcEEEEECCCCHHHHH-HHHHHHhCCC-CEEEEEEecCCcccccc-C---CC--Ccc-c--cCCHHHhcc--CCCEEEEC
Confidence 479999998 999986 8888877766 99999999998876544 1 22 332 2 389999997 49999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCeeE
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMS 160 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i~~ 160 (355)
||+..|.+++..|+++||||+|+ |.+.+.+++++|.+++++ .++.+..++..++....+.++++...||. +.
T Consensus 68 t~p~~~~~~~~~al~~G~~vvig-ttG~s~~~~~~l~~aa~~------~~v~~s~n~s~g~~~~~~l~~~aa~~l~~-~d 139 (257)
T PRK00048 68 TTPEATLENLEFALEHGKPLVIG-TTGFTEEQLAELEEAAKK------IPVVIAPNFSIGVNLLMKLAEKAAKYLGD-YD 139 (257)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhcC------CCEEEECcchHHHHHHHHHHHHHHHhcCC-CC
Confidence 99999999999999999999999 899999999999997766 58888888889999999999999977984 44
Q ss_pred EEE
Q 018445 161 VQV 163 (355)
Q Consensus 161 v~~ 163 (355)
+++
T Consensus 140 ~ei 142 (257)
T PRK00048 140 IEI 142 (257)
T ss_pred EEE
Confidence 444
No 18
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=99.71 E-value=6.1e-16 Score=139.69 Aligned_cols=210 Identities=15% Similarity=0.202 Sum_probs=159.6
Q ss_pred eEEEEe-cccccchhccchhhhcCCeEEEEEEE-eCCHHHHHHHHHHHhhhcCC---------------------ccccc
Q 018445 4 RIAILG-AGIFVKTQYIPRLAEISDLVSLKFIW-SRSEESAKSAAEVARKHFAD---------------------VECVW 60 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~-d~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 60 (355)
||+|+| +|.||.. ++..+.+++++++|++++ +.+.+++.+.+++ +.|. +...+
T Consensus 3 ~VaILGsTGSIG~~-tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~---f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~ 78 (385)
T PRK05447 3 RITILGSTGSIGTQ-TLDVIRRNPDRFRVVALSAGKNVELLAEQARE---FRPKYVVVADEEAAKELKEALAAAGIEVLA 78 (385)
T ss_pred eEEEEcCChHHHHH-HHHHHHhCccccEEEEEEcCCCHHHHHHHHHH---hCCCEEEEcCHHHHHHHHHhhccCCceEEE
Confidence 899999 9999986 999999988889999998 8999888887763 3222 22333
Q ss_pred cCcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEE-ecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecc
Q 018445 61 GDNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQ-EKPAAANISEIENALSRYNSICPDPPGQPIWAVAENY 139 (355)
Q Consensus 61 ~~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~ 139 (355)
+.+.+.++++++++|+|+++++...|.+.+.+|+++||+|.+ +||.-. .....+.++++++ |+.+..-
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV--~aG~~i~~~a~~~------g~~i~PV--- 147 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV--CAGELVMDAAKKS------GAQILPV--- 147 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH--hhHHHHHHHHHHc------CCeEEEE---
Confidence 446788999999999999999999999999999999999999 999876 5577888999984 5444333
Q ss_pred cCchHHHHHHHHHHH--hCCeeEEEEEEee-ccCCCC-----------CccCcccccc----ccCccccchhhHHHHHHH
Q 018445 140 RFEPAFVECKKLIAE--IGDMMSVQVIVEG-SMNSSN-----------PYFSSSWRRN----FTGGFILDMGVHFIAGLR 201 (355)
Q Consensus 140 r~~p~~~~~k~~i~~--iG~i~~v~~~~~~-~~~~~~-----------~~~~~~w~~~----~~gg~l~d~g~H~id~~~ 201 (355)
++.+..+++.++. ..+|..+-++-++ ++..+. .-..++|.-. .+.-.|++-|.|.|| ..
T Consensus 148 --DSEh~ai~q~l~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IE-A~ 224 (385)
T PRK05447 148 --DSEHSAIFQCLPGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIE-AH 224 (385)
T ss_pred --CHHHHHHHHHhcCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHh-HH
Confidence 8999999999985 1134444443322 222110 0112467541 334478899999999 99
Q ss_pred HHhCCcceeEEEeecccCCCCCCCceEEEEEEecCCc
Q 018445 202 MITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENGC 238 (355)
Q Consensus 202 ~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~ 238 (355)
||||-+++++....+ .....+.+++|.||.
T Consensus 225 ~Lf~~~~~~I~vvIH-------pqSivHsmVef~DGs 254 (385)
T PRK05447 225 WLFGLPYEQIEVVIH-------PQSIIHSMVEYVDGS 254 (385)
T ss_pred HHcCCChhhEEEEEC-------CcCceeEEEEEeCCc
Confidence 999988889988774 345788999999995
No 19
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.68 E-value=4.7e-16 Score=138.07 Aligned_cols=185 Identities=13% Similarity=0.138 Sum_probs=125.4
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-HHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-ESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
++||||||+|.+|+. |++.+.++++ ++|+++||+++ +++. + .. +. |.+.+.++++ +++|+|++|
T Consensus 3 kIRVgIVG~GnIGr~-~a~al~~~pd-~ELVgV~dr~~~~~~~---~---~~--~v---~~~~d~~e~l--~~iDVViIc 67 (324)
T TIGR01921 3 KIRAAIVGYGNLGRS-VEKAIQQQPD-MELVGVFSRRGAETLD---T---ET--PV---YAVADDEKHL--DDVDVLILC 67 (324)
T ss_pred CcEEEEEeecHHHHH-HHHHHHhCCC-cEEEEEEcCCcHHHHh---h---cC--Cc---cccCCHHHhc--cCCCEEEEc
Confidence 579999999999985 8999988877 99999999995 3322 1 11 22 2225666666 459999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH-hCCe
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAAANI-SEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE-IGDM 158 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a~~~-~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~-iG~i 158 (355)
||+..|++.+.++|++|+||.++||...+. +..++|.++|++. |...+++ ..++|.+..+++++.+ + -+
T Consensus 68 tPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~------g~vsvi~--~GwDPG~~si~r~~~ea~-lp 138 (324)
T TIGR01921 68 MGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAA------GNVSVIS--TGWDPGMFSINRVYGEAV-LP 138 (324)
T ss_pred CCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHc------CCEEEEE--CCCCcChHHHHHHHHhcc-CC
Confidence 999999999999999999999999987765 4455666666653 5555555 8899999999999986 1 11
Q ss_pred eEEEEEEeeccCCCCCccCcccccc-ccCc---cccchhhHHHHHHHHHh-CCcceeEEEeecc
Q 018445 159 MSVQVIVEGSMNSSNPYFSSSWRRN-FTGG---FILDMGVHFIAGLRMIT-GCEVVSVSAITSH 217 (355)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~~~~w~~~-~~gg---~l~d~g~H~id~~~~l~-G~~~~~V~a~~~~ 217 (355)
...+.+|.++--++ ..++..+ ..|- ..+- +..+|.+.+.+ | ++..+++....
T Consensus 139 ~g~~yt~wG~g~s~----ghs~a~~~~~Gv~~a~~~t--ip~~dal~~v~~G-e~~~l~~~~~h 195 (324)
T TIGR01921 139 KGQTYTFWGPGLSQ----GHSDAVRRIDGVKKAVQYT--LPSEDALEKARRG-EAPELTGKQTH 195 (324)
T ss_pred CCcceeccCCCcCc----hhhhhhcccCCcccceEEE--EehHHHHHHHHcC-Cccccccccce
Confidence 11222211110000 0111111 1222 2332 44899999998 7 66677776643
No 20
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.66 E-value=3.7e-16 Score=137.58 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=101.8
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeC-CHHHH-HHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSR-SEESA-KSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|||+|+| +|.||+. ++..+...++ ++|++++|+ +++.. +.+.+.......++. . ++|++++ . .++|+|++
T Consensus 2 ikV~IiGa~G~MG~~-i~~~i~~~~~-~elvav~d~~~~~~~~~~~~~~~~~~~~gv~-~--~~d~~~l-~-~~~DvVId 74 (266)
T TIGR00036 2 IKVAVAGAAGRMGRE-LIKAALAAEG-LQLVAAFERHGSSLQGTDAGELAGIGKVGVP-V--TDDLEAV-E-TDPDVLID 74 (266)
T ss_pred eEEEEECCCCHHHHH-HHHHHHhCCC-CEEEEEEecCCccccCCCHHHhcCcCcCCce-e--eCCHHHh-c-CCCCEEEE
Confidence 7999999 6999986 8988888776 999999994 34332 122221100001232 2 3899999 3 45999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHH
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIA 153 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 153 (355)
+||+..|.+++..|+++|+||+|+|| +.+.+++++|.++|++ +|+.++++.|+-. .+.-+.++++
T Consensus 75 fT~p~~~~~~~~~al~~g~~vVigtt-g~~~e~~~~l~~aA~~------~g~~v~~a~NfSl--Gv~ll~~~~~ 139 (266)
T TIGR00036 75 FTTPEGVLNHLKFALEHGVRLVVGTT-GFSEEDKQELADLAEK------AGIAAVIAPNFSI--GVNLMFKLLE 139 (266)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHhc------CCccEEEECcccH--HHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999999 5888888877654 3433333333
No 21
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=99.31 E-value=1.4e-12 Score=111.47 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=79.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.||+|||+|.+|.. +.+.+.....+++++|++|.++++...... +.+. +.++++++++.+.++|.|+|++|
T Consensus 85 ~rV~IIGaG~iG~~-l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-------g~~v-~~~~~l~~li~~~~iD~ViIa~P 155 (213)
T PRK05472 85 WNVALVGAGNLGRA-LLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-------GIPV-YHIDELEEVVKENDIEIGILTVP 155 (213)
T ss_pred cEEEEECCCHHHHH-HHHhhhcccCCcEEEEEEECChhhcCCEeC-------CeEE-cCHHHHHHHHHHCCCCEEEEeCC
Confidence 58999999999975 565433222349999999999876533211 3222 22378999999889999999999
Q ss_pred CcccHHHHHHHHHcC-CeEEEecCCCCCHHH
Q 018445 83 GQAQVDTSLKLLKAG-KHVIQEKPAAANISE 112 (355)
Q Consensus 83 ~~~H~~~~~~al~~G-khVl~EKP~a~~~~e 112 (355)
+..|.+++..++++| ++|+|+||++.++.+
T Consensus 156 ~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 156 AEAAQEVADRLVEAGIKGILNFAPVRLSVPE 186 (213)
T ss_pred chhHHHHHHHHHHcCCCEEeecCceeecCCC
Confidence 999999999999999 799999999998864
No 22
>PF02894 GFO_IDH_MocA_C: Oxidoreductase family, C-terminal alpha/beta domain; InterPro: IPR004104 Enzymes containing this domain utilise NADP or NAD, and are known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, C-terminal domain is almost always associated with the oxidoreductase, N-terminal domain (see IPR000683 from INTERPRO).; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3IP3_E 3DTY_B 3Q2I_A 2P2S_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A 3NT2_A 3NT4_A ....
Probab=99.28 E-value=1.8e-11 Score=93.78 Aligned_cols=99 Identities=28% Similarity=0.422 Sum_probs=74.1
Q ss_pred HHHHHH--hCCeeEEEEEEeeccCCCCCccCcccccc--ccCccccchhhHHHHHHHHHhCCcceeEEEeec--ccCCCC
Q 018445 149 KKLIAE--IGDMMSVQVIVEGSMNSSNPYFSSSWRRN--FTGGFILDMGVHFIAGLRMITGCEVVSVSAITS--HIDKTL 222 (355)
Q Consensus 149 k~~i~~--iG~i~~v~~~~~~~~~~~~~~~~~~w~~~--~~gg~l~d~g~H~id~~~~l~G~~~~~V~a~~~--~~~~~~ 222 (355)
|++|++ ||+|+.+++.+........+ ...|+.+ .+||.++|+|+|.+|+++||+|.+++.+.+... ......
T Consensus 1 KelI~~g~iG~v~~v~~~~~~~~~~~~~--~~~~~~~~~~~gG~l~d~g~H~id~~~~l~G~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF02894_consen 1 KELIEEGEIGKVRSVQGEFRFYRAPRPP--RWRWRRDPEAGGGALLDLGIHQIDLVRWLFGSPPTVVAAAGGQRQLPEAQ 78 (115)
T ss_dssp HHHHHTTTTSSEEEEEEEEEEEEBHTHH--HHSGGGSHHTTTSHHHHTHHHHHHHHHHHHTSEEEEEEEEEESESSTTTT
T ss_pred ChhhcCCCCCCEEEEEEeeecccccCCc--cccccccccCCceEEEeehhHHHHHHHHHhCCCcEEEEEEEeccccCCCC
Confidence 688986 99999999765543332212 2344443 799999999999999999999988888887763 233334
Q ss_pred CCCceE--EEEEEecCCcEEEEEEEEecC
Q 018445 223 PPPDNI--SSNFQLENGCSGVFVMVVSSR 249 (355)
Q Consensus 223 ~~~d~~--~~~l~~~~G~~~~~~~~~~~~ 249 (355)
+.+|.. .+.+.+.+|...++..++...
T Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (115)
T PF02894_consen 79 EDEDAADRFANFEFGSGAVATLTASFNNG 107 (115)
T ss_dssp SSESEEEEEEEEEETTEEEEEEEEESSSS
T ss_pred CccccceEEEEEEeCCEEEEEEEEcccCC
Confidence 566777 789999999999888888764
No 23
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.12 E-value=6.7e-10 Score=101.13 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=107.8
Q ss_pred CCceEEEEecccccchhccchhhh--------cCCeEEEEEEEeCCHHH-------HHHHHHHHhhhcCCcccccc----
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAE--------ISDLVSLKFIWSRSEES-------AKSAAEVARKHFADVECVWG---- 61 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~--------~~~~~~vvai~d~~~~~-------~~~~~~~~~~~~~~~~~~~~---- 61 (355)
|++||+|+|+|..|.. .+..|.+ .+-.++|++|+|++... ...+.+..++.. .+ ..|.
T Consensus 1 ~~i~VaIiG~GnVG~~-~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~-~~-~~~~~~~~ 77 (336)
T PRK08374 1 MEVKVSIFGFGNVGRA-VAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFG-KL-SNWGNDYE 77 (336)
T ss_pred CeeEEEEECCCHHHHH-HHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccC-ch-hhcccccc
Confidence 8999999999999985 6666654 23348999999964211 112111111111 11 1110
Q ss_pred --CcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEE-Eec-CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEe
Q 018445 62 --DNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVI-QEK-PAAANISEIENALSRYNSICPDPPGQPIWAVAE 137 (355)
Q Consensus 62 --~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl-~EK-P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~ 137 (355)
..++++++.+.++|+|+-+|++..+.++..+++++||||. ..| |++...+ +|.+++++ +++.+...-
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~---el~~la~~------~~~~~~~ea 148 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYD---ELLDLANE------RNLPYLFEA 148 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHH---HHHHHHHH------cCCeEEEec
Confidence 0278899987889999999999999999999999999988 889 8885555 66677777 466666555
Q ss_pred ccc-CchHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 138 NYR-FEPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 138 ~~r-~~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
+.- --|....+++.+. --+|..++..+++
T Consensus 149 ~v~~GiPii~~l~~~l~-g~~i~~i~GIlnG 178 (336)
T PRK08374 149 TVMAGTPIIGLLRENLL-GDTVKRIEAVVNA 178 (336)
T ss_pred cccccCCchHHHHhhcc-ccceEEEEEEEec
Confidence 444 5699999999884 3578888887654
No 24
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=89.83 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=105.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|+|||||||.||+. .+..+...+..++++++||++.++++.+.+. . +.+.. ++++|++++ +|+++=|..
T Consensus 1 l~vgiVGcGaIG~~-l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~---~--~~~~~---s~ide~~~~--~DlvVEaAS 69 (255)
T COG1712 1 LKVGIVGCGAIGKF-LLELVRDGRVDFELVAVYDRDEEKAKELEAS---V--GRRCV---SDIDELIAE--VDLVVEAAS 69 (255)
T ss_pred CeEEEEeccHHHHH-HHHHHhcCCcceeEEEEecCCHHHHHHHHhh---c--CCCcc---ccHHHHhhc--cceeeeeCC
Confidence 68999999999985 6776665545599999999999999988762 1 22222 789999954 999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHH-HHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hCCee
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEI-ENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IGDMM 159 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG~i~ 159 (355)
+..-.+++.++|++|++|++=---+..-.+. .++.++++. ++..+++ -+...--.+.+.+ .|.|.
T Consensus 70 ~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~------~~~rv~~------pSGAiGGlD~l~aar~g~i~ 137 (255)
T COG1712 70 PEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKC------GGARVYL------PSGAIGGLDALAAARVGGIE 137 (255)
T ss_pred HHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhc------CCcEEEe------cCccchhHHHHHHhhcCCee
Confidence 9999999999999999999887666554444 456677777 4666554 3444444455554 68998
Q ss_pred EEEEEE
Q 018445 160 SVQVIV 165 (355)
Q Consensus 160 ~v~~~~ 165 (355)
++...-
T Consensus 138 ~V~ltt 143 (255)
T COG1712 138 EVVLTT 143 (255)
T ss_pred EEEEEe
Confidence 888764
No 25
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.07 E-value=4e-09 Score=90.82 Aligned_cols=141 Identities=17% Similarity=0.108 Sum_probs=108.7
Q ss_pred CCceEEEEecccccchhccchhhhc-CCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI-SDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~-~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|++||||||||.||+. ....|... ...+++++++++++++.+.+.. ..+ .+ +|+++|+. .++|+|+=
T Consensus 1 ~~~rvgiIG~GaIG~~-va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------~~~-~~--~~l~~ll~-~~~DlVVE 68 (267)
T PRK13301 1 MTHRIAFIGLGAIASD-VAAGLLADAAQPCQLAALTRNAADLPPALAG-------RVA-LL--DGLPGLLA-WRPDLVVE 68 (267)
T ss_pred CceEEEEECccHHHHH-HHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------cCc-cc--CCHHHHhh-cCCCEEEE
Confidence 8999999999999985 55656532 2348999999999989888765 222 22 89999976 45999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEecCCCC-CHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH--hC
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQEKPAAA-NISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--IG 156 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--iG 156 (355)
|.++..=.++..++|++|+++++=-+-+. +.+-..+|.++|++ +|..+++ -.....-.+.|+. .|
T Consensus 69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~------~g~~i~i------pSGAigGlD~l~aa~~~ 136 (267)
T PRK13301 69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA------GGARIRV------PAGAIAGLDYLQAVAGR 136 (267)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh------CCCEEEE------eChHHHhHHHHHHhhcc
Confidence 99999999999999999999999988755 45556778888888 4777766 3445555555554 67
Q ss_pred CeeEEEEEE
Q 018445 157 DMMSVQVIV 165 (355)
Q Consensus 157 ~i~~v~~~~ 165 (355)
.+..+.++-
T Consensus 137 ~~~~v~~~t 145 (267)
T PRK13301 137 DDAEVVYES 145 (267)
T ss_pred CceEEEEEE
Confidence 888777553
No 26
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=2.5e-09 Score=97.63 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=76.9
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH--hhh---------c--CCccccccCcchhhh
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA--RKH---------F--ADVECVWGDNGLEQI 68 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~--~~~---------~--~~~~~~~~~~~~~el 68 (355)
.+||||+|+|+||+. +++.+...++ ++|++++|++++....++... ..+ + .++. .+.+++++
T Consensus 1 ~ikVaI~G~GrIGr~-va~al~~~~d-~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~---V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKR-VADAVAAQPD-MELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIP---VAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHH-HHHHHhcCCC-cEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceE---EcCChhHh
Confidence 379999999999986 8998888776 999999999877666555421 000 0 0111 12578888
Q ss_pred hcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCC
Q 018445 69 IKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPA 106 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~ 106 (355)
+++ +|+|+.|||+..|.+.+..++++||+|+.--|-
T Consensus 76 ~~~--vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEK--ADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hcc--CCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence 854 999999999999999999999999999998875
No 27
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.96 E-value=7.1e-10 Score=100.92 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=90.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+++|||+|.+++. |+..+....+ ++-+.++++++++++++++.....+ ++... .++++++++.+ .|+|+.|||
T Consensus 128 ~~v~iiGaG~~a~~-~~~al~~~~~-~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--aDiVi~aT~ 201 (325)
T PRK08618 128 KTLCLIGTGGQAKG-QLEAVLAVRD-IERVRVYSRTFEKAYAFAQEIQSKF-NTEIY-VVNSADEAIEE--ADIIVTVTN 201 (325)
T ss_pred cEEEEECCcHHHHH-HHHHHHhcCC-ccEEEEECCCHHHHHHHHHHHHHhc-CCcEE-EeCCHHHHHhc--CCEEEEccC
Confidence 37999999999985 8888776555 7889999999999999987653322 22211 12889999965 899999999
Q ss_pred CcccHHHHHHHHHcCCeE---------EEecCCCCCHHHHHHHH-----HHhhccCCCCCCCCeEEEEecccCchH
Q 018445 83 GQAQVDTSLKLLKAGKHV---------IQEKPAAANISEIENAL-----SRYNSICPDPPGQPIWAVAENYRFEPA 144 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhV---------l~EKP~a~~~~e~~~l~-----~~a~~~~~~~~~~~~~~v~~~~r~~p~ 144 (355)
.. |..+. .+++.|+|| .+|+|. ..+..+..++ ...+++ |-........++.+.
T Consensus 202 s~-~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~-~~~~~a~~vvvD~~~~~~~e~------G~~~~~~~~~~~~~~ 268 (325)
T PRK08618 202 AK-TPVFS-EKLKKGVHINAVGSFMPDMQELPS-EAIARANKVVVESKEAALEET------GDLIVPLKEGLISKD 268 (325)
T ss_pred CC-CcchH-HhcCCCcEEEecCCCCcccccCCH-HHHhhCCEEEECCHHHHHHhc------CCcccHHHcCCCChh
Confidence 76 88888 999999999 789997 3444444332 334443 544444444555544
No 28
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.95 E-value=8.8e-10 Score=100.90 Aligned_cols=97 Identities=25% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCc-cccccCcchhhhhcCCCccEEE
Q 018445 1 MAPRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADV-ECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 1 m~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ell~~~~~D~V~ 78 (355)
|.+||+|||+ |.+|.. +++.|.++++ +++++++++. ...+.+.+... ...+. ... +++++++ ...++|+|+
T Consensus 1 ~m~kVaIiGAtG~vG~~-l~~~L~~~p~-~elv~v~~~~-~~g~~l~~~~~-~~~~~~~~~--~~~~~~~-~~~~vD~Vf 73 (343)
T PRK00436 1 MMIKVGIVGASGYTGGE-LLRLLLNHPE-VEIVAVTSRS-SAGKPLSDVHP-HLRGLVDLV--LEPLDPE-ILAGADVVF 73 (343)
T ss_pred CCeEEEEECCCCHHHHH-HHHHHHcCCC-ceEEEEECcc-ccCcchHHhCc-ccccccCce--eecCCHH-HhcCCCEEE
Confidence 6689999996 889986 8999998876 8999999953 33333332110 01111 112 2566665 335699999
Q ss_pred EecCCcccHHHHHHHHHcCCeEEEec
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl~EK 104 (355)
+|+|+..|.+++.+++++|+||+-=-
T Consensus 74 ~alP~~~~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 74 LALPHGVSMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred ECCCcHHHHHHHHHHHhCCCEEEECC
Confidence 99999999999999999999987644
No 29
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=98.92 E-value=1.8e-08 Score=75.30 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=82.3
Q ss_pred cCchHHHHHHHHHHHhC-CeeEEEEEEeeccCCCCCccCccccccccCccccchhhHHHHHHHHHhCC-cceeEEEeecc
Q 018445 140 RFEPAFVECKKLIAEIG-DMMSVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMITGC-EVVSVSAITSH 217 (355)
Q Consensus 140 r~~p~~~~~k~~i~~iG-~i~~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l~G~-~~~~V~a~~~~ 217 (355)
||.+..+++|++|++.+ ++..+.++|..-+... ....-|.....||.+.+.+.|..|++++|.|+ +..+|.+....
T Consensus 1 RYl~~vq~~K~ii~en~l~vm~~~aRY~~ay~~~--~K~~WW~ks~sgGpiVEQaTHfcDL~RYfgGeVdldtV~a~sve 78 (142)
T PF08635_consen 1 RYLKAVQKMKQIIKENNLPVMATNARYNCAYEHI--AKPFWWNKSKSGGPIVEQATHFCDLSRYFGGEVDLDTVQAHSVE 78 (142)
T ss_pred CchHHHHHHHHHHHhcCCceEEEEeeeeeehhcc--CCchhhhhcccCCCeeeehhhHHHHHHHhcCceeeeeEEEEecc
Confidence 89999999999999833 5777787775322211 11223545589999999999999999999995 44566665543
Q ss_pred cCCC-------------CCCC----ceEEEEEEecCCcEEEEEEEEecCCCC--eEEEEEee
Q 018445 218 IDKT-------------LPPP----DNISSNFQLENGCSGVFVMVVSSRSPK--IFWRVVGM 260 (355)
Q Consensus 218 ~~~~-------------~~~~----d~~~~~l~~~~G~~~~~~~~~~~~~~~--~~~~i~G~ 260 (355)
.... ++.+ -...++.+|++|+++++.....-.+.. ..++|+++
T Consensus 79 ~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky~sGAVGsl~H~~~LqG~~y~telev~aD 140 (142)
T PF08635_consen 79 WDEPPGKLSKIPVDESKIPPENRIPRATSATWKYKSGAVGSLTHALALQGTNYSTELEVYAD 140 (142)
T ss_pred ccCCCCcCCCCCcCcccCChhhcCcceeeeEEEeccCceehhhhhhhccccccceEEEEecc
Confidence 2211 1111 245789999999999998887665543 45666553
No 30
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.84 E-value=7.7e-08 Score=87.93 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=106.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccc----cCcchhhhhcCCCccEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVW----GDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ell~~~~~D~V~ 78 (355)
+||.|||+|++|+. .+..|.++++ .+| -++||+.++++++.+.. .+.+.... ....+.++|++ .|+|+
T Consensus 2 ~~ilviGaG~Vg~~-va~~la~~~d-~~V-~iAdRs~~~~~~i~~~~---~~~v~~~~vD~~d~~al~~li~~--~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSV-VAHKLAQNGD-GEV-TIADRSKEKCARIAELI---GGKVEALQVDAADVDALVALIKD--FDLVI 73 (389)
T ss_pred CcEEEECCchhHHH-HHHHHHhCCC-ceE-EEEeCCHHHHHHHHhhc---cccceeEEecccChHHHHHHHhc--CCEEE
Confidence 58999999999986 7777787775 566 67899999999987631 11121111 01467888988 49999
Q ss_pred EecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHH--HHHHHHhC
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVEC--KKLIAEIG 156 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~--k~~i~~iG 156 (355)
.+.|+..+..++++|+++|+|++-- +...+..+++.+.++++ |+..+. ..=|+|.+.-+ ..+++++.
T Consensus 74 n~~p~~~~~~i~ka~i~~gv~yvDt---s~~~~~~~~~~~~a~~A------git~v~--~~G~dPGi~nv~a~~a~~~~~ 142 (389)
T COG1748 74 NAAPPFVDLTILKACIKTGVDYVDT---SYYEEPPWKLDEEAKKA------GITAVL--GCGFDPGITNVLAAYAAKELF 142 (389)
T ss_pred EeCCchhhHHHHHHHHHhCCCEEEc---ccCCchhhhhhHHHHHc------CeEEEc--ccCcCcchHHHHHHHHHHHhh
Confidence 9999999999999999999998743 22222248888999995 765554 34468887543 34455577
Q ss_pred -CeeEEEEEEee
Q 018445 157 -DMMSVQVIVEG 167 (355)
Q Consensus 157 -~i~~v~~~~~~ 167 (355)
+|.++++..+.
T Consensus 143 ~~i~si~iy~g~ 154 (389)
T COG1748 143 DEIESIDIYVGG 154 (389)
T ss_pred ccccEEEEEEec
Confidence 99999998864
No 31
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.78 E-value=1.3e-07 Score=82.75 Aligned_cols=144 Identities=13% Similarity=0.138 Sum_probs=89.7
Q ss_pred CceEEEEecccccchhccchhhhcC-CeEE-EEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEIS-DLVS-LKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~-~~~~-vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
.+||+|||+|.+|.. +...+.+.+ ..++ ++.+.++++++++.+.+ ++ ++. .+ +++++++++ .|+|++
T Consensus 4 ~~kI~iIG~G~mg~a-la~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~--~~~-~~--~~~~~~~~~--~DiVii 72 (245)
T PRK07634 4 KHRILFIGAGRMAEA-IFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA---RY--NVS-TT--TDWKQHVTS--VDTIVL 72 (245)
T ss_pred CCeEEEECcCHHHHH-HHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH---Hc--CcE-Ee--CChHHHHhc--CCEEEE
Confidence 479999999999985 778876553 2244 44444446788877765 23 332 22 788999875 899999
Q ss_pred ecCCcccHHHHHHHHH--cCCeEEEecCCCCCHHHHHHHHHH-----------hhccCCCCCCCCeEEEEecccCchH-H
Q 018445 80 VLAGQAQVDTSLKLLK--AGKHVIQEKPAAANISEIENALSR-----------YNSICPDPPGQPIWAVAENYRFEPA-F 145 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~--~GkhVl~EKP~a~~~~e~~~l~~~-----------a~~~~~~~~~~~~~~v~~~~r~~p~-~ 145 (355)
++|+..|.+++..... .++ +++==.-+.+++..++.... +.+.+ .+....+ +....++. .
T Consensus 73 avp~~~~~~v~~~l~~~~~~~-~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~----~g~~~~~-~~~~~~~~~~ 146 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQ-LVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIG----KSISLYT-MGQSVNETHK 146 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCC-EEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHh----cCCeEEe-eCCCCCHHHH
Confidence 9999999999877543 244 44544556777776665421 01111 1333332 22223333 3
Q ss_pred HHHHHHHHHhCCeeEEE
Q 018445 146 VECKKLIAEIGDMMSVQ 162 (355)
Q Consensus 146 ~~~k~~i~~iG~i~~v~ 162 (355)
..++++++.+|....+.
T Consensus 147 ~~v~~lf~~~G~~~~~~ 163 (245)
T PRK07634 147 ETLQLILKGIGTSQLCT 163 (245)
T ss_pred HHHHHHHHhCCCEEEEC
Confidence 56666666799888653
No 32
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=2.6e-07 Score=78.63 Aligned_cols=162 Identities=20% Similarity=0.188 Sum_probs=126.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC-
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA- 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp- 82 (355)
+|.|.|+= +|. +|+.++..-+.++++++|.....+|.++++. .+ +++.. ...||+-++.++-+|+|-+.
T Consensus 6 sVvV~Gtr-FGq-~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh---~~--GVply---~~~eelpd~idiACVvVrsai 75 (361)
T COG4693 6 SVVVCGTR-FGQ-FYLAAFAAAPPRFELAGILAQGSERSRALAH---RL--GVPLY---CEVEELPDDIDIACVVVRSAI 75 (361)
T ss_pred eEEEecch-HHH-HHHHHhccCCCCceeehhhhcccHHHHHHHH---Hh--CCccc---cCHhhCCCCCCeEEEEEeeee
Confidence 67777765 676 4999998766669999999999999999887 44 77643 88999999965555555433
Q ss_pred -CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH---hCCe
Q 018445 83 -GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE---IGDM 158 (355)
Q Consensus 83 -~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~---iG~i 158 (355)
-..--+++++.|++|.||+.|.|+. +.+..++.++|++ .|....|+..+...|+.++..+..++ =-++
T Consensus 76 ~Gg~Gs~larall~RGi~VlqEHPl~--p~di~~l~rlA~r------qG~~y~vNTfYPhlpA~rrfi~~~rql~~~~~p 147 (361)
T COG4693 76 VGGQGSALARALLARGIHVLQEHPLH--PRDIQDLLRLAER------QGRRYLVNTFYPHLPAVRRFIEYARQLHRRRGP 147 (361)
T ss_pred ecCCcHHHHHHHHHcccHHHHhCCCC--HHHHHHHHHHHHH------hCcEEEEeccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 2467899999999999999999964 5678889999999 59999999999999999998888775 3456
Q ss_pred eEEEEEEeeccCCCCCccCccccccccCccccchhhHHHHHHHHHhCC
Q 018445 159 MSVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMITGC 206 (355)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~H~id~~~~l~G~ 206 (355)
..+++..+- .+..-.+|++...+|.
T Consensus 148 ~~veat~gv-----------------------QvlystLDil~~aLgg 172 (361)
T COG4693 148 RFVEATCGV-----------------------QVLYSTLDILARALGG 172 (361)
T ss_pred CeEEeecch-----------------------hhhHHHHHHHHHHhcC
Confidence 666665321 2345567877777763
No 33
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.73 E-value=1.1e-08 Score=79.43 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=77.0
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHH-HH-HHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEE-SA-KSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|||+|+|+ |+||+. ....+.+.++ ++|++++|+.+. .. +...+.....-.+++. +++++++++. +|+|+-
T Consensus 1 mrV~i~G~~GrMG~~-i~~~i~~~~~-~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~--~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRA-IAEAILESPG-FELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEE--ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHH-HHHHHHHSTT-EEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH---SEEEE
T ss_pred CEEEEECCCCHHHHH-HHHHHHhcCC-cEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhccc--CCEEEE
Confidence 69999999 999986 7778887776 999999999872 11 1111111011123332 3899999997 999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
+|.+..=.++++.|+++|+++.+=-- ..+.++.++|.+++++
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTT-G~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTT-GFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-S-SSHHHHHHHHHHHTTT
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHHhcc
Confidence 99888889999999999999888421 2345666667776655
No 34
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.72 E-value=1.3e-07 Score=83.41 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=92.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||||||+|.||.. .+..|.+.+.....+.++++++++++.+.+ ++ ++... + ++.++++++ .|+|++++|
T Consensus 1 m~IgiIG~G~mG~a-ia~~L~~~g~~~~~i~v~~r~~~~~~~l~~---~~-~~~~~-~--~~~~~~~~~--aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEA-MVTGLLTSPADVSEIIVSPRNAQIAARLAE---RF-PKVRI-A--KDNQAVVDR--SDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHH-HHHHHHhCCCChheEEEECCCHHHHHHHHH---Hc-CCceE-e--CCHHHHHHh--CCEEEEEeC
Confidence 48999999999985 788887654324556889999999888775 22 22322 2 688888875 799999999
Q ss_pred CcccHHHHHHH-HHcCCeEEEecCCCCCHHHHHHHHHHh-------------hccCCCCCCCCeEEEEecccCchHHHHH
Q 018445 83 GQAQVDTSLKL-LKAGKHVIQEKPAAANISEIENALSRY-------------NSICPDPPGQPIWAVAENYRFEPAFVEC 148 (355)
Q Consensus 83 ~~~H~~~~~~a-l~~GkhVl~EKP~a~~~~e~~~l~~~a-------------~~~~~~~~~~~~~~v~~~~r~~p~~~~~ 148 (355)
+..-.+++... +..|++|+... .+.+.++.+++.... .. .+... +.+....+
T Consensus 71 p~~~~~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~------~g~t~-------~~~~~~~~ 136 (258)
T PRK06476 71 PQIAEEVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAER------KGVTA-------IYPPDPFV 136 (258)
T ss_pred HHHHHHHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhC------CCCeE-------ecCCHHHH
Confidence 75555554432 24678888876 578888887776431 11 13222 23445678
Q ss_pred HHHHHHhCCeeEE
Q 018445 149 KKLIAEIGDMMSV 161 (355)
Q Consensus 149 k~~i~~iG~i~~v 161 (355)
+++++.+|....+
T Consensus 137 ~~l~~~lG~~~~~ 149 (258)
T PRK06476 137 AALFDALGTAVEC 149 (258)
T ss_pred HHHHHhcCCcEEE
Confidence 8888889987764
No 35
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.71 E-value=5.3e-08 Score=72.12 Aligned_cols=88 Identities=25% Similarity=0.249 Sum_probs=66.2
Q ss_pred eEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||||||+|++|.. .+..|.+.+ ...+|.-++++++++++++++ ++ +.... ..+..|+++. .|+|++|+|
T Consensus 1 kI~iIG~G~mg~a-l~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~---~~--~~~~~--~~~~~~~~~~--advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSA-LARGLLASGIKPHEVIIVSSRSPEKAAELAK---EY--GVQAT--ADDNEEAAQE--ADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHH-HHHHHHHTTS-GGEEEEEEESSHHHHHHHHH---HC--TTEEE--SEEHHHHHHH--TSEEEE-S-
T ss_pred CEEEECCCHHHHH-HHHHHHHCCCCceeEEeeccCcHHHHHHHHH---hh--ccccc--cCChHHhhcc--CCEEEEEEC
Confidence 7999999999985 788887665 224777678999999999887 33 22222 1489999995 899999999
Q ss_pred CcccHHHHHHH--HHcCCeEE
Q 018445 83 GQAQVDTSLKL--LKAGKHVI 101 (355)
Q Consensus 83 ~~~H~~~~~~a--l~~GkhVl 101 (355)
+....++.... +..++.|+
T Consensus 71 p~~~~~v~~~i~~~~~~~~vi 91 (96)
T PF03807_consen 71 PQQLPEVLSEIPHLLKGKLVI 91 (96)
T ss_dssp GGGHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhhccCCCEEE
Confidence 99999998876 55666654
No 36
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.67 E-value=1.3e-08 Score=78.46 Aligned_cols=112 Identities=20% Similarity=0.156 Sum_probs=80.4
Q ss_pred ecccccchhccchhhhcCC--eEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCCccc
Q 018445 9 GAGIFVKTQYIPRLAEISD--LVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 9 G~G~~~~~~~~~~l~~~~~--~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~~H 86 (355)
|+|.+|+. .+..|.+... +++|++|++++ ........ ...++.. . ++++++++++.++|+|+=||++..-
T Consensus 1 G~G~VG~~-l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~---~~~~~~~-~--~~~~~~~~~~~~~dvvVE~t~~~~~ 72 (117)
T PF03447_consen 1 GFGNVGRG-LLEQLKEQQERIDLEVVGVADRS-MLISKDWA---ASFPDEA-F--TTDLEELIDDPDIDVVVECTSSEAV 72 (117)
T ss_dssp --SHHHHH-HHHHHHHTHHHCEEEEEEEEESS-EEEETTHH---HHHTHSC-E--ESSHHHHHTHTT-SEEEE-SSCHHH
T ss_pred CCCHHHHH-HHHHHHhCcccCCEEEEEEEECC-chhhhhhh---hhccccc-c--cCCHHHHhcCcCCCEEEECCCchHH
Confidence 89999986 8888886541 49999999999 21111010 0111222 2 2899999997789999999999999
Q ss_pred HHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHhhccCCCCCCCCeEEE
Q 018445 87 VDTSLKLLKAGKHVIQE--KPAAANISEIENALSRYNSICPDPPGQPIWAV 135 (355)
Q Consensus 87 ~~~~~~al~~GkhVl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v 135 (355)
.++..++|++|+||.+= +|++ +.....+|.++|++ +|+.++.
T Consensus 73 ~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~------~g~~~~~ 116 (117)
T PF03447_consen 73 AEYYEKALERGKHVVTANKGALA-DEALYEELREAARK------NGVRIYY 116 (117)
T ss_dssp HHHHHHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHH------HT-EEEE
T ss_pred HHHHHHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHH------cCCEEEe
Confidence 99999999999998765 3667 88999999999999 4776653
No 37
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.61 E-value=1.1e-07 Score=85.59 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=73.8
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-----cCCccccc------cCcchhhhhcCCC
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-----FADVECVW------GDNGLEQIIKEDS 73 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~ell~~~~ 73 (355)
|||+|+|+||+. |++++...++ ++|+||+|.++++++.++... ++ ++.....+ .+.++++|++ +
T Consensus 1 VaInG~GrIGr~-varav~~~~d-~elVaVnD~~~~~~a~lA~~l-gyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKR-VADAVTKQDD-MKLVGVTKTSPDFEAYRAKEL-GIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--K 75 (333)
T ss_pred CEEECCcHHHHH-HHHHHhhCCC-cEEEEEecCChHHHHHHHHHh-CCCEEeecCCcceEeccCceEecCCHHHHhh--c
Confidence 699999999986 8999887665 999999999999877776532 11 00000000 0257999995 4
Q ss_pred ccEEEEecCCcccHHHHHHHHHcC-CeEEEecCC
Q 018445 74 ILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPA 106 (355)
Q Consensus 74 ~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~ 106 (355)
+|+|++|||...|..-...-++.| |.||+==|-
T Consensus 76 vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred CCEEEECCCCCCChhhHHHHHhCCcCEEEECCCC
Confidence 999999999999999999999999 678876663
No 38
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.60 E-value=4e-07 Score=81.21 Aligned_cols=148 Identities=20% Similarity=0.275 Sum_probs=106.9
Q ss_pred CCceEEEEecccccchhccchhhhc--------CCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcch-----hh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI--------SDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGL-----EQ 67 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~--------~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~e 67 (355)
|++||+|+|+|..|.. .++.|.++ +..++|++|.+++....+.. ..+++ ..+ .++. .+
T Consensus 2 ~~v~v~l~G~G~VG~~-~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~------~~~~~-~~~-~~~~~~~~~~~ 72 (333)
T COG0460 2 KTVKVGLLGLGTVGSG-VLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDL------DLLNA-EVW-TTDGALSLGDE 72 (333)
T ss_pred ceEEEEEEccCchhHH-HHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccc------cccch-hhh-eecccccccHh
Confidence 6789999999999986 78777653 23499999999988776411 11121 111 2556 78
Q ss_pred hhcCCCccEEEEecCC-----cccHHHHHHHHHcCCeEEEe-c-CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEeccc
Q 018445 68 IIKEDSILGVAVVLAG-----QAQVDTSLKLLKAGKHVIQE-K-PAAANISEIENALSRYNSICPDPPGQPIWAVAENYR 140 (355)
Q Consensus 68 ll~~~~~D~V~I~tp~-----~~H~~~~~~al~~GkhVl~E-K-P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r 140 (355)
++.++++|+|+=+++. .. +++.++||++||||..- | |++.. ..+|.++|++. +...++-+...=
T Consensus 73 ~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~---~~el~~~A~~~-----g~~l~yEAtV~g 143 (333)
T COG0460 73 VLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALH---YHELREAAEKN-----GVKLLYEATVGG 143 (333)
T ss_pred hhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhh---HHHHHHHHHHh-----CCeEEEEeeecc
Confidence 8888899988766555 34 68999999999998874 4 44444 77888999985 234555666666
Q ss_pred CchHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 141 FEPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 141 ~~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
--|....+++.+.. -+|.++...+.+
T Consensus 144 GiPiI~~lr~~l~g-~~I~~i~GIlNG 169 (333)
T COG0460 144 GIPIIKLLRELLAG-DEILSIRGILNG 169 (333)
T ss_pred CcchHHHHHhhccc-CceEEEEEEEec
Confidence 77999999999882 478888888764
No 39
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.60 E-value=2e-07 Score=81.97 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=96.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCC-----------------ccccccCcc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFAD-----------------VECVWGDNG 64 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 64 (355)
++|||+||+|.||+. .+..+.+.++ ++++++.|++.+.++++.+++ +.|. ..+.+.++|
T Consensus 17 PiRVGlIGAG~mG~~-ivtQi~~m~G-m~vvaisd~~~~~ak~A~~~a--g~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D 92 (438)
T COG4091 17 PIRVGLIGAGEMGTG-IVTQIASMPG-MEVVAISDRNLDAAKRAYDRA--GGPKIEAVEADDASKMADAIEAGKIAVTDD 92 (438)
T ss_pred ceEEEEecccccchH-HHHHHhhcCC-ceEEEEecccchHHHHHHHHh--cCCcccccccchhhHHHHHHhcCcEEEecc
Confidence 689999999999987 6766778887 999999999999998876632 2222 112334578
Q ss_pred hhhhhcCCCccEEEEecCC-cccHHHHHHHHHcCCeEEE---ecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEeccc
Q 018445 65 LEQIIKEDSILGVAVVLAG-QAQVDTSLKLLKAGKHVIQ---EKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYR 140 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r 140 (355)
.++++..+.+|+|+=+|-. ..-+++...|+.+||||.+ |--++.-+ -|...+.+ .|++...+.--
T Consensus 93 ~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp----~Lk~~Ad~------~GviyS~~~GD- 161 (438)
T COG4091 93 AELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGP----ILKQQADA------AGVIYSGGAGD- 161 (438)
T ss_pred hhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecH----HHHHHHhh------cCeEEeccCCC-
Confidence 9999999999999988765 5778999999999999764 43333322 34455555 36665443321
Q ss_pred CchHH-HHHHHHHHHhCC
Q 018445 141 FEPAF-VECKKLIAEIGD 157 (355)
Q Consensus 141 ~~p~~-~~~k~~i~~iG~ 157 (355)
.|.. ..+.+..+++|-
T Consensus 162 -eP~~~mEL~efa~a~G~ 178 (438)
T COG4091 162 -EPSSCMELYEFASALGF 178 (438)
T ss_pred -CcHHHHHHHHHHHhcCC
Confidence 2332 345555555653
No 40
>PRK06046 alanine dehydrogenase; Validated
Probab=98.59 E-value=9.5e-08 Score=87.03 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.++.. |+.++...++ ++.+.+||++++++++++++.++.. +..... ++|++++++ .|+|++|||
T Consensus 130 ~~vgiiG~G~qa~~-h~~al~~~~~-i~~v~v~~r~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~l~---aDiVv~aTp 202 (326)
T PRK06046 130 KVVGIIGAGNQART-QLLALSEVFD-LEEVRVYDRTKSSAEKFVERMSSVV-GCDVTV-AEDIEEACD---CDILVTTTP 202 (326)
T ss_pred CEEEEECCcHHHHH-HHHHHHhhCC-ceEEEEECCCHHHHHHHHHHHHhhc-CceEEE-eCCHHHHhh---CCEEEEecC
Confidence 48999999999985 9999987765 9999999999999999988653322 221111 278999985 899999999
Q ss_pred CcccHHHH-HHHHHcCCeEEE
Q 018445 83 GQAQVDTS-LKLLKAGKHVIQ 102 (355)
Q Consensus 83 ~~~H~~~~-~~al~~GkhVl~ 102 (355)
+.. +++ .+.++.|.||..
T Consensus 203 s~~--P~~~~~~l~~g~hV~~ 221 (326)
T PRK06046 203 SRK--PVVKAEWIKEGTHINA 221 (326)
T ss_pred CCC--cEecHHHcCCCCEEEe
Confidence 854 433 456899999874
No 41
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.58 E-value=9.3e-08 Score=74.20 Aligned_cols=91 Identities=23% Similarity=0.215 Sum_probs=61.6
Q ss_pred eEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchh-hhhcCCCccEEEEec
Q 018445 4 RIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLE-QIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ell~~~~~D~V~I~t 81 (355)
||||||+ |.+|.. +++.+..+++ ++++++|+++..+.+.+.. .++.+.... +.+++ +.+++.+.|+|++|+
T Consensus 1 ki~iiG~~g~~g~~-~~~~l~~~~~-~~l~av~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQE-LLRLLAEHPD-FEVVALAASARSAGKRVSE----AGPHLKGEV-VLELEPEDFEELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHH-HHHHHhcCCC-ceEEEEEechhhcCcCHHH----HCccccccc-ccccccCChhhcCCCEEEEcC
Confidence 7999996 667764 8898988876 9999999977655555543 222222111 12333 444446799999999
Q ss_pred CCcccHHHH---HHHHHcCCeEE
Q 018445 82 AGQAQVDTS---LKLLKAGKHVI 101 (355)
Q Consensus 82 p~~~H~~~~---~~al~~GkhVl 101 (355)
|+..|.+++ ..+++.|+.|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~vi 96 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVI 96 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEE
Confidence 999999964 44456777654
No 42
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.54 E-value=9.3e-07 Score=82.85 Aligned_cols=148 Identities=17% Similarity=0.086 Sum_probs=100.8
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcc---ccc-cCcchhhhhcCCCccEEEEe
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVE---CVW-GDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~ell~~~~~D~V~I~ 80 (355)
|+|+|+|.+|+. .+..|.+..+ +.=+.++|++.++++++.+.. ....+. ... ...++++++++ .|+|+.|
T Consensus 1 IlvlG~G~vG~~-~~~~L~~~~~-~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSA-IARLLARRGP-FEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELLRG--CDVVINC 74 (386)
T ss_dssp EEEE--SHHHHH-HHHHHHCTTC-E-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE-
T ss_pred CEEEcCcHHHHH-HHHHHhcCCC-CCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHHhc--CCEEEEC
Confidence 789999999986 7888887766 535588999999999987631 111111 111 01245667776 6999999
Q ss_pred cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhC----
Q 018445 81 LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIG---- 156 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG---- 156 (355)
+|+..+..++++|+++|+|.+- .+.-..+..++-+.+++ +|+.+.++.-.-=-..-.-++.+++++.
T Consensus 75 ~gp~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~------~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~ 145 (386)
T PF03435_consen 75 AGPFFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKE------AGVTALPGCGFDPGLSNLLARYAADELDAEGD 145 (386)
T ss_dssp SSGGGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHH------TTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTH
T ss_pred CccchhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHh------hCCEEEeCcccccchHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999666 22236677888888888 4888888777655555566666666655
Q ss_pred CeeEEEEEEee
Q 018445 157 DMMSVQVIVEG 167 (355)
Q Consensus 157 ~i~~v~~~~~~ 167 (355)
++.++.+..+.
T Consensus 146 ~v~~~~~~~g~ 156 (386)
T PF03435_consen 146 EVESVDIYVGG 156 (386)
T ss_dssp EEEEEEEEEEE
T ss_pred cceEEEEEEcc
Confidence 89999966554
No 43
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.49 E-value=2.6e-07 Score=71.45 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=57.3
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
.+||+|||+|+.|.. ....|.+.+ ..|++++++++++++.+++ ..+... + .+++|++.+ .|+++|++
T Consensus 10 ~l~I~iIGaGrVG~~-La~aL~~ag--~~v~~v~srs~~sa~~a~~----~~~~~~--~--~~~~~~~~~--aDlv~iav 76 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTA-LARALARAG--HEVVGVYSRSPASAERAAA----FIGAGA--I--LDLEEILRD--ADLVFIAV 76 (127)
T ss_dssp --EEEEECTSCCCCH-HHHHHHHTT--SEEEEESSCHH-HHHHHHC------TT---------TTGGGCC---SEEEE-S
T ss_pred ccEEEEECCCHHHHH-HHHHHHHCC--CeEEEEEeCCccccccccc----cccccc--c--ccccccccc--CCEEEEEe
Confidence 379999999999984 677777654 7999999999988888775 222322 1 578888876 89999999
Q ss_pred CCcccHHHHHHHHHc
Q 018445 82 AGQAQVDTSLKLLKA 96 (355)
Q Consensus 82 p~~~H~~~~~~al~~ 96 (355)
|++.=.+++.+....
T Consensus 77 pDdaI~~va~~La~~ 91 (127)
T PF10727_consen 77 PDDAIAEVAEQLAQY 91 (127)
T ss_dssp -CCHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHh
Confidence 999888888876655
No 44
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=2.3e-06 Score=75.97 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|-+||+|||+|.||.. +...+.+.+.....+.++++++++++.+.+ ++ ++.. .++.++++++ .|+|++|
T Consensus 1 ~mm~I~iIG~G~mG~~-la~~l~~~g~~~~~v~v~~r~~~~~~~~~~---~~--g~~~---~~~~~~~~~~--advVil~ 69 (267)
T PRK11880 1 MMKKIGFIGGGNMASA-IIGGLLASGVPAKDIIVSDPSPEKRAALAE---EY--GVRA---ATDNQEAAQE--ADVVVLA 69 (267)
T ss_pred CCCEEEEEechHHHHH-HHHHHHhCCCCcceEEEEcCCHHHHHHHHH---hc--CCee---cCChHHHHhc--CCEEEEE
Confidence 7789999999999985 777777543223456788999998887765 22 3322 2677888764 8999999
Q ss_pred cCCcccHHHHHHHHHc-CCeEEEecCCCCCHHHHH
Q 018445 81 LAGQAQVDTSLKLLKA-GKHVIQEKPAAANISEIE 114 (355)
Q Consensus 81 tp~~~H~~~~~~al~~-GkhVl~EKP~a~~~~e~~ 114 (355)
+|+..+.+++..+... ++.|+.--. +.+.++..
T Consensus 70 v~~~~~~~v~~~l~~~~~~~vvs~~~-gi~~~~l~ 103 (267)
T PRK11880 70 VKPQVMEEVLSELKGQLDKLVVSIAA-GVTLARLE 103 (267)
T ss_pred cCHHHHHHHHHHHHhhcCCEEEEecC-CCCHHHHH
Confidence 9999999988876544 444444332 33444333
No 45
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.45 E-value=3e-07 Score=84.37 Aligned_cols=92 Identities=23% Similarity=0.265 Sum_probs=68.1
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccc----cccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVEC----VWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ell~~~~~D~V 77 (355)
+||+|||+ |.+|.. +++.|.++|. ++++++++.++...+.+.+ .++.+.. .+...+.+++++ ++|+|
T Consensus 1 ~kVaIiGATG~vG~e-llr~L~~hP~-~el~~l~~s~~sagk~~~~----~~~~l~~~~~~~~~~~~~~~~~~--~~DvV 72 (346)
T TIGR01850 1 IKVAIVGASGYTGGE-LLRLLLNHPE-VEITYLVSSRESAGKPVSE----VHPHLRGLVDLNLEPIDEEEIAE--DADVV 72 (346)
T ss_pred CEEEEECCCCHHHHH-HHHHHHcCCC-ceEEEEeccchhcCCChHH----hCccccccCCceeecCCHHHhhc--CCCEE
Confidence 58999998 989986 8999998887 8999998776544444433 1221111 110125566664 59999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl~ 102 (355)
++|+|+..|.+++.+++++|++|+-
T Consensus 73 f~alP~~~s~~~~~~~~~~G~~VID 97 (346)
T TIGR01850 73 FLALPHGVSAELAPELLAAGVKVID 97 (346)
T ss_pred EECCCchHHHHHHHHHHhCCCEEEe
Confidence 9999999999999999999999874
No 46
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.44 E-value=3.8e-06 Score=75.99 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=99.1
Q ss_pred ceEEEEecccccchhccchhhhc------CCeEEEEEEEeCCHHH-------HHHHHHHHhhhcCCccccccCc--chhh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEI------SDLVSLKFIWSRSEES-------AKSAAEVARKHFADVECVWGDN--GLEQ 67 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~------~~~~~vvai~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~e 67 (355)
|||+|||+|.+|+. .+..|.+. +.+++|++|+|++... .+.+.+..++ . .+. .+..+ ++++
T Consensus 1 mrVaIiGfG~VG~~-va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g-~l~-~~~~~~~~~~~ 76 (326)
T PRK06392 1 IRISIIGLGNVGLN-VLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-G-RLE-EIDYEKIKFDE 76 (326)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-C-ccc-cCCCCcCCHHH
Confidence 59999999999986 67776652 2348999999976422 1222211111 0 111 11113 6888
Q ss_pred hhcCCCccEEEEecCCcc----cHHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHhhccCCCCCCCCeEEE-Eeccc
Q 018445 68 IIKEDSILGVAVVLAGQA----QVDTSLKLLKAGKHVIQE--KPAAANISEIENALSRYNSICPDPPGQPIWAV-AENYR 140 (355)
Q Consensus 68 ll~~~~~D~V~I~tp~~~----H~~~~~~al~~GkhVl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v-~~~~r 140 (355)
+++ .++|+|+=|||... ...+..+||++||||.+= +|++ ....+|.++|++. ++.+.. +...-
T Consensus 77 ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA---~~~~eL~~lA~~~------g~~~~~eatV~~ 146 (326)
T PRK06392 77 IFE-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA---NHWHDIMDSASKN------RRIIRYEATVAG 146 (326)
T ss_pred Hhc-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH---hhHHHHHHHHHHc------CCeEEEeeeeee
Confidence 887 58999999998532 467779999999998765 3555 4457888889884 655554 44555
Q ss_pred CchHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 141 FEPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 141 ~~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
-.|....++..+.. -+|..++..+++
T Consensus 147 g~Pii~~~~~~~~g-~~i~~i~GilnG 172 (326)
T PRK06392 147 GVPLFSLRDYSTLP-SRIKNFRGIVSS 172 (326)
T ss_pred ccchhhhhhhhccc-CCEEEEEEEEeC
Confidence 67888877554442 478888887654
No 47
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.42 E-value=1.8e-06 Score=77.93 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=74.8
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|.+||||||+|.+|.. +...+.+.+ .+|+ ++|+++++.+.+.+ . +... ++++++++++ .|+|+++
T Consensus 1 ~~~~IgviG~G~mG~~-~a~~l~~~g--~~v~-~~d~~~~~~~~~~~----~--g~~~---~~~~~e~~~~--~d~vi~~ 65 (296)
T PRK11559 1 MTMKVGFIGLGIMGKP-MSKNLLKAG--YSLV-VYDRNPEAVAEVIA----A--GAET---ASTAKAVAEQ--CDVIITM 65 (296)
T ss_pred CCceEEEEccCHHHHH-HHHHHHHCC--CeEE-EEcCCHHHHHHHHH----C--CCee---cCCHHHHHhc--CCEEEEe
Confidence 7889999999999985 777777654 5664 68999999887654 2 3322 2688999875 8999999
Q ss_pred cCCcccHHHHH-------HHHHcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 81 LAGQAQVDTSL-------KLLKAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 81 tp~~~H~~~~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
+|+..|.+.+. ..++.|+ ++++- -+.++..++++.+.+++
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~-iiid~-st~~~~~~~~l~~~~~~ 112 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGT-VVIDM-SSIAPLASREIAAALKA 112 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCc-EEEEC-CCCCHHHHHHHHHHHHH
Confidence 99988866553 2223344 44443 25567778888887766
No 48
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.41 E-value=2.7e-06 Score=77.37 Aligned_cols=156 Identities=10% Similarity=0.009 Sum_probs=99.6
Q ss_pred CCceEEEEecccccchhccchhhhc--------CCeEEEEEEEeCCHHHHHH----HHHHHhh-hcCCccccccCcchhh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI--------SDLVSLKFIWSRSEESAKS----AAEVARK-HFADVECVWGDNGLEQ 67 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~--------~~~~~vvai~d~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~e 67 (355)
|.++|+|+|+|.+|.. .+..|.+. +-+++|++|++++...... ..+..+. ..+.....+...+.++
T Consensus 1 ~~i~I~liG~G~VG~~-~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (346)
T PRK06813 1 MKIKVVLSGYGTVGRE-FIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE 79 (346)
T ss_pred CeeEEEEEecChhHHH-HHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence 7899999999999986 77776532 2348999999976543321 0000000 0000000111134555
Q ss_pred hhcCC-CccEEEEecCCc-----ccHHHHHHHHHcCCeEEEe-c-CCCCCHHHHHHHHHHhhccCCCCCCCCeEE-EEec
Q 018445 68 IIKED-SILGVAVVLAGQ-----AQVDTSLKLLKAGKHVIQE-K-PAAANISEIENALSRYNSICPDPPGQPIWA-VAEN 138 (355)
Q Consensus 68 ll~~~-~~D~V~I~tp~~-----~H~~~~~~al~~GkhVl~E-K-P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~-v~~~ 138 (355)
++.++ ++|+|+=+||+. .-++++.+||++||||..- | |++... .+|.++|++. |+.+. -+..
T Consensus 80 ~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~---~eL~~lA~~~------g~~~~yEasV 150 (346)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNW---REINEAAKIA------NVRIRYSGAT 150 (346)
T ss_pred HhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccH---HHHHHHHHHc------CCeEEEeeee
Confidence 55554 699999999975 3367889999999998664 4 556555 7778888884 65554 3445
Q ss_pred ccCchHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 139 YRFEPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 139 ~r~~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
.=--|....++..+. --+|..++..+.+
T Consensus 151 ggGiPiI~~l~~~~~-g~~I~~i~GIlNG 178 (346)
T PRK06813 151 AAALPTLDIGQFSLA-GCHIEKIEGILNG 178 (346)
T ss_pred eeccchHHHHhhhcc-cCcEEEEEEEEec
Confidence 556799998854433 3578888887654
No 49
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.40 E-value=4e-07 Score=70.49 Aligned_cols=91 Identities=33% Similarity=0.400 Sum_probs=65.4
Q ss_pred eEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCCccccccCcchhhhhcCCCccEEEEe
Q 018445 4 RIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH--FADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|||||| +|.+|.. .++.|.+++. ++++.+++++....+.+....... +.+.... ..+.+++ .++|+|+.|
T Consensus 1 rV~IvGAtG~vG~~-l~~lL~~hp~-~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRE-LLRLLAEHPD-FELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DADPEEL---SDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHH-HHHHHHHTST-EEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETSGHHH---TTESEEEE-
T ss_pred CEEEECCCCHHHHH-HHHHHhcCCC-ccEEEeeeeccccCCeeehhccccccccceeEe--ecchhHh---hcCCEEEec
Confidence 899999 9999986 7899999887 999999999885555555421100 0111110 0123333 459999999
Q ss_pred cCCcccHHHHHHHHHcCCeEE
Q 018445 81 LAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 81 tp~~~H~~~~~~al~~GkhVl 101 (355)
+|+..+.+++.+++++|..|+
T Consensus 74 ~~~~~~~~~~~~~~~~g~~Vi 94 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVI 94 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEE
T ss_pred CchhHHHHHHHHHhhCCcEEE
Confidence 999999999999999999665
No 50
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.39 E-value=7.2e-06 Score=72.71 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=77.0
Q ss_pred CCceEEEEecccccchhccchhhhcC--CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEIS--DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~--~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
|.+||||||+|.||.. .+..|.+.+ ...+| .++|+++++++.+.+ ++ ++... ++.++++.+ .|+|+
T Consensus 1 ~~~~IgfIG~G~MG~a-ia~~L~~~g~~~~~~I-~v~~r~~~~~~~l~~---~~--g~~~~---~~~~e~~~~--aDiIi 68 (272)
T PRK12491 1 MNKQIGFIGCGNMGIA-MIGGMINKNIVSPDQI-ICSDLNVSNLKNASD---KY--GITIT---TNNNEVANS--ADILI 68 (272)
T ss_pred CCCeEEEECccHHHHH-HHHHHHHCCCCCCceE-EEECCCHHHHHHHHH---hc--CcEEe---CCcHHHHhh--CCEEE
Confidence 8899999999999985 777777543 11244 678999999887764 23 33222 678888875 79999
Q ss_pred EecCCcccHHHHHHHHH--cCCeEEEecCCCCCHHHHHHHHH
Q 018445 79 VVLAGQAQVDTSLKLLK--AGKHVIQEKPAAANISEIENALS 118 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~--~GkhVl~EKP~a~~~~e~~~l~~ 118 (355)
+|+||..-.+++..... .+.++++-=-.+.++++.++++.
T Consensus 69 LavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 69 LSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred EEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence 99999666666655332 24568888888899999888763
No 51
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.39 E-value=6.4e-07 Score=81.51 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-++||||+|.++.. |+.++....+ ++-+.|||+++++++.++++.+++...+.. +++.+|++++ .|+|+.|||
T Consensus 129 ~~lgiiG~G~qA~~-~l~al~~~~~-~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~---~~~~~eav~~--aDiVitaT~ 201 (325)
T TIGR02371 129 SVLGIIGAGRQAWT-QLEALSRVFD-LEEVSVYCRTPSTREKFALRASDYEVPVRA---ATDPREAVEG--CDILVTTTP 201 (325)
T ss_pred CEEEEECCCHHHHH-HHHHHHhcCC-CCEEEEECCCHHHHHHHHHHHHhhCCcEEE---eCCHHHHhcc--CCEEEEecC
Confidence 47999999999985 8888887665 788899999999999998876554222222 2899999975 899999998
Q ss_pred CcccHHHH-HHHHHcCCeEEEe
Q 018445 83 GQAQVDTS-LKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~-~~al~~GkhVl~E 103 (355)
... +++ .+.++.|.||..=
T Consensus 202 s~~--P~~~~~~l~~g~~v~~v 221 (325)
T TIGR02371 202 SRK--PVVKADWVSEGTHINAI 221 (325)
T ss_pred CCC--cEecHHHcCCCCEEEec
Confidence 743 333 4568999998643
No 52
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.37 E-value=2.6e-06 Score=69.62 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=77.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
+|||+||+|.||.. ....|.+.+ ++| .+||+++++++.+.+. ++... +|++|+.+. .|+|++++|
T Consensus 2 ~~Ig~IGlG~mG~~-~a~~L~~~g--~~v-~~~d~~~~~~~~~~~~------g~~~~---~s~~e~~~~--~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSA-MARNLAKAG--YEV-TVYDRSPEKAEALAEA------GAEVA---DSPAEAAEQ--ADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHH-HHHHHHHTT--TEE-EEEESSHHHHHHHHHT------TEEEE---SSHHHHHHH--BSEEEE-SS
T ss_pred CEEEEEchHHHHHH-HHHHHHhcC--CeE-EeeccchhhhhhhHHh------hhhhh---hhhhhHhhc--ccceEeecc
Confidence 49999999999986 888887765 576 5789999999998762 33322 899999997 799999999
Q ss_pred CcccHHHHHHH---HHc--CCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEe
Q 018445 83 GQAQVDTSLKL---LKA--GKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAE 137 (355)
Q Consensus 83 ~~~H~~~~~~a---l~~--GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~ 137 (355)
+....+-+... +.. .-.++++=- +.++++++++.+.+++ +|+.+.-+-
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~------~g~~~vdap 119 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAA------KGVRYVDAP 119 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHH------TTEEEEEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhh------ccceeeeee
Confidence 97765444332 321 133555432 7788889999988887 365554443
No 53
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.34 E-value=5.5e-06 Score=74.75 Aligned_cols=106 Identities=11% Similarity=0.162 Sum_probs=75.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCC-CccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKED-SILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~-~~D~V~I~t 81 (355)
|||||||+|.||.. +...|.+.+ .+|+ ++|+++++.+.+.+ . +... +.+++++++.. +.|+|++++
T Consensus 1 m~Ig~IGlG~mG~~-mA~~L~~~g--~~v~-v~dr~~~~~~~~~~----~--g~~~---~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGLGKMGGN-MAERLREDG--HEVV-GYDVNQEAVDVAGK----L--GITA---RHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcccHHHHH-HHHHHHhCC--CEEE-EEECCHHHHHHHHH----C--CCee---cCCHHHHHHhCCCCCEEEEEe
Confidence 48999999999985 788887754 5765 79999999887754 2 3322 27899998763 379999999
Q ss_pred CCcccHHHHHHHHHcC---CeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 82 AGQAQVDTSLKLLKAG---KHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 82 p~~~H~~~~~~al~~G---khVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
|+..+.+-+..-+... ..++++= -+.++.+.+++.+.+++
T Consensus 68 p~~~~~~~v~~~i~~~l~~g~ivid~-st~~~~~~~~~~~~~~~ 110 (299)
T PRK12490 68 PAGEVTESVIKDLYPLLSPGDIVVDG-GNSRYKDDLRRAEELAE 110 (299)
T ss_pred cCchHHHHHHHHHhccCCCCCEEEEC-CCCCchhHHHHHHHHHH
Confidence 9996655443333322 2466663 25567778888877776
No 54
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.33 E-value=2.1e-06 Score=77.56 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=73.5
Q ss_pred eEEEEecccccchhccchhhhcC--CeEEEEEEEeCCHHHHHHHHHHHhh-h--cC-------------Cccccc-cCcc
Q 018445 4 RIAILGAGIFVKTQYIPRLAEIS--DLVSLKFIWSRSEESAKSAAEVARK-H--FA-------------DVECVW-GDNG 64 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~--~~~~vvai~d~~~~~~~~~~~~~~~-~--~~-------------~~~~~~-~~~~ 64 (355)
||||+|+|+||+. +++.+.+.+ ++++|++|.|....+..+..-+.+. + ++ +-...+ ...+
T Consensus 1 ~IaInGfGrIGR~-vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRN-VLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHH-HHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 7999999999986 888887643 3499999999876554443321100 0 00 000000 0124
Q ss_pred hhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCCCC
Q 018445 65 LEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAAAN 109 (355)
Q Consensus 65 ~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a~~ 109 (355)
++++- .+.++|+|+-||+...+.+.+..++++| |.|.+.+|+..+
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d 126 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASD 126 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCC
Confidence 55543 3468999999999999999999999999 999999998754
No 55
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=6.6e-06 Score=73.30 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=69.5
Q ss_pred ceEEEEecccccchhccchhhhcC--CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEIS--DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~--~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
+||+|||+|.||.. +...|.+.+ ...+|+.+..+.+++.+.+.+ .++.... +++.++++++ .|+|++|
T Consensus 2 ~~I~iIG~G~mG~a-la~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~----~~~~~~~---~~~~~e~~~~--aDvVila 71 (277)
T PRK06928 2 EKIGFIGYGSMADM-IATKLLETEVATPEEIILYSSSKNEHFNQLYD----KYPTVEL---ADNEAEIFTK--CDHSFIC 71 (277)
T ss_pred CEEEEECccHHHHH-HHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH----HcCCeEE---eCCHHHHHhh--CCEEEEe
Confidence 48999999999985 777777543 113665554444454444433 1222221 1677888765 7999999
Q ss_pred cCCcccHHHHHHHH---HcCCeEEEecCCCCCHHHHHHHH
Q 018445 81 LAGQAQVDTSLKLL---KAGKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 81 tp~~~H~~~~~~al---~~GkhVl~EKP~a~~~~e~~~l~ 117 (355)
+|+..+.+++.++. ..+++|++ ..-+.+.++.+++.
T Consensus 72 vpp~~~~~vl~~l~~~l~~~~~ivS-~~aGi~~~~l~~~~ 110 (277)
T PRK06928 72 VPPLAVLPLLKDCAPVLTPDRHVVS-IAAGVSLDDLLEIT 110 (277)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEE-ECCCCCHHHHHHHc
Confidence 99999888887653 35665544 67788888887765
No 56
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=98.30 E-value=5.7e-05 Score=70.20 Aligned_cols=210 Identities=14% Similarity=0.197 Sum_probs=138.5
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCC-HHHHHHHHHHHhhhcCC-----------------------cc
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRS-EESAKSAAEVARKHFAD-----------------------VE 57 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~-~~~~~~~~~~~~~~~~~-----------------------~~ 57 (355)
.||+|+|+ |.||.. -+..+.++++.++|+++...+ -+.+...+. ++.|. ..
T Consensus 58 KkI~ILGSTGSIGtq-tLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~---~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~ 133 (454)
T PLN02696 58 KPISLLGSTGSIGTQ-TLDIVAENPDKFKVVALAAGSNVTLLADQVR---KFKPKLVAVRNESLVDELKEALADLDDKPE 133 (454)
T ss_pred cEEEEecCCcHhhHH-HHHHHHhCccccEEEEEECCCCHHHHHHHHH---HhCCCEEEEcCHHHHHHHHHhhcCCCCCcE
Confidence 49999998 999986 788888888889999976643 334333222 22111 12
Q ss_pred ccccCcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEe-cCCCCCHHHH-HHHHHHhhccCCCCCCCCeEEE
Q 018445 58 CVWGDNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQE-KPAAANISEI-ENALSRYNSICPDPPGQPIWAV 135 (355)
Q Consensus 58 ~~~~~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~E-KP~a~~~~e~-~~l~~~a~~~~~~~~~~~~~~v 135 (355)
..++.+++.++++.+++|.|+.+.--..=...+.+||++||+|.+- | .++--+ ..+..+++++ |..+..
T Consensus 134 vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANK---ESLV~aG~lI~~~ak~~------~~~IlP 204 (454)
T PLN02696 134 IIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK---ETLIAGGPFVLPLAKKH------GVKILP 204 (454)
T ss_pred EEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEecH---HHHHhhHHHHHHHHHHc------CCeEee
Confidence 2233367888999999999999999988888899999999998663 2 233333 3456788884 655443
Q ss_pred EecccCchHHHHHHHHHHH--hCCeeEEEEEEeec-cCCCCC-----------ccCcccccc----ccCccccchhhHHH
Q 018445 136 AENYRFEPAFVECKKLIAE--IGDMMSVQVIVEGS-MNSSNP-----------YFSSSWRRN----FTGGFILDMGVHFI 197 (355)
Q Consensus 136 ~~~~r~~p~~~~~k~~i~~--iG~i~~v~~~~~~~-~~~~~~-----------~~~~~w~~~----~~gg~l~d~g~H~i 197 (355)
-+.-.-.+.+.++. -+.|..+.++-++. +..+.. -..++|.=. .+.-.|++-|.--|
T Consensus 205 -----VDSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvI 279 (454)
T PLN02696 205 -----ADSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVI 279 (454)
T ss_pred -----cchhhHHHHHHccCCCccCccEEEEECCchhccCCCHHHHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHH
Confidence 35555666666653 23466666654432 221110 013567521 33446677777777
Q ss_pred HHHHHHhCCcceeEEEeecccCCCCCCCceEEEEEEecCCc
Q 018445 198 AGLRMITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENGC 238 (355)
Q Consensus 198 d~~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~ 238 (355)
... ||||-++.++....+ .....+.+++|.||.
T Consensus 280 EA~-~LF~~~~d~I~vvIH-------PqSiIHsmVef~DGS 312 (454)
T PLN02696 280 EAH-YLFGADYDDIDIVIH-------PQSIIHSMVETQDSS 312 (454)
T ss_pred HHH-HHcCCCHHHeEEEEC-------cCCeeeEEEEEcCCc
Confidence 765 999988888888764 345788999999995
No 57
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.23 E-value=2.3e-06 Score=69.29 Aligned_cols=126 Identities=21% Similarity=0.127 Sum_probs=80.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.||+|||+|.+|.. +...+.+.+ ...+.++|+++++++.+++..... .+...+ .+.++++++ +|+|+++||
T Consensus 20 ~~i~iiG~G~~g~~-~a~~l~~~g--~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~Dvvi~~~~ 90 (155)
T cd01065 20 KKVLILGAGGAARA-VAYALAELG--AAKIVIVNRTLEKAKALAERFGEL--GIAIAY--LDLEELLAE--ADLIINTTP 90 (155)
T ss_pred CEEEEECCcHHHHH-HHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHhhc--ccceee--cchhhcccc--CCEEEeCcC
Confidence 58999999999985 888887654 345678899999998877632111 011122 567777554 999999999
Q ss_pred Cccc----HHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHH
Q 018445 83 GQAQ----VDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVE 147 (355)
Q Consensus 83 ~~~H----~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~ 147 (355)
+..| .......++.|+-|+ += +...... ++.+.+++ .|..+..|+..--++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~v~-D~--~~~~~~~-~l~~~~~~------~g~~~v~g~~~~~~q~~~~ 149 (155)
T cd01065 91 VGMKPGDELPLPPSLLKPGGVVY-DV--VYNPLET-PLLKEARA------LGAKTIDGLEMLVYQAAEA 149 (155)
T ss_pred CCCCCCCCCCCCHHHcCCCCEEE-Ec--CcCCCCC-HHHHHHHH------CCCceeCCHHHHHHHHHHH
Confidence 9998 222234455565333 32 1112222 77788888 4777777766655544443
No 58
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.19 E-value=1.3e-05 Score=72.21 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=71.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~t 81 (355)
|||||||+|.||.. ....|.+.+ .+|+ ++|+++++.+.+.+ . +.... .+++++.+. .+.|+|++++
T Consensus 1 M~Ig~IGlG~mG~~-la~~L~~~g--~~V~-~~dr~~~~~~~l~~----~--g~~~~---~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGAN-IVRRLAKRG--HDCV-GYDHDQDAVKAMKE----D--RTTGV---ANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHH-HHHHHHHCC--CEEE-EEECCHHHHHHHHH----c--CCccc---CCHHHHHhhcCCCCEEEEEc
Confidence 48999999999985 778887754 5764 58999999888775 1 22211 577777653 4589999999
Q ss_pred CCcccHHHHHHHH---HcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 82 AGQAQVDTSLKLL---KAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 82 p~~~H~~~~~~al---~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
|+....+++...+ +.| +++++ --+..+.+..++.+..++
T Consensus 68 p~~~~~~v~~~l~~~l~~g-~ivid-~st~~~~~t~~~~~~~~~ 109 (298)
T TIGR00872 68 PHGIVDAVLEELAPTLEKG-DIVID-GGNSYYKDSLRRYKLLKE 109 (298)
T ss_pred CchHHHHHHHHHHhhCCCC-CEEEE-CCCCCcccHHHHHHHHHh
Confidence 9995555554433 334 46666 223344667777666666
No 59
>PRK07680 late competence protein ComER; Validated
Probab=98.19 E-value=3.5e-05 Score=68.56 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=68.8
Q ss_pred ceEEEEecccccchhccchhhhcCC-eEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISD-LVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~-~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
|||+|||+|.||.. +...|.+.+. ...-+.++++++++++.+.+ .++++... .+.++++.. .|+|++++
T Consensus 1 m~I~iIG~G~mG~a-la~~L~~~g~~~~~~v~v~~r~~~~~~~~~~----~~~g~~~~---~~~~~~~~~--aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTI-LIEAFLESGAVKPSQLTITNRTPAKAYHIKE----RYPGIHVA---KTIEEVISQ--SDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHH-HHHHHHHCCCCCcceEEEECCCHHHHHHHHH----HcCCeEEE---CCHHHHHHh--CCEEEEec
Confidence 48999999999985 7888776541 12346789999998877654 22244322 678888765 79999999
Q ss_pred CCcccHHHHHHHHH---cCCeEEEecCCCCCHHHHHHH
Q 018445 82 AGQAQVDTSLKLLK---AGKHVIQEKPAAANISEIENA 116 (355)
Q Consensus 82 p~~~H~~~~~~al~---~GkhVl~EKP~a~~~~e~~~l 116 (355)
|+....+++..... .++ +++-=.-+.+.++..++
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~-~iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEH-CLVSITSPISVEQLETL 107 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCC-EEEEECCCCCHHHHHHH
Confidence 99888887766432 344 33332233466655554
No 60
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.17 E-value=1e-05 Score=69.28 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=89.2
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHH-HHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAK-SAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|.|++-+-|.|.+|.. .++.+.+.++ ++||+.++++.++.- .+.+.......++.. .++++..++-..-++++.
T Consensus 1 m~~~vvqyGtG~vGv~-air~l~akpe-~elvgawv~s~ak~Gkdlgelagl~dlgV~a---~~~~~avlAtl~~~~~y~ 75 (350)
T COG3804 1 MSLRVVQYGTGSVGVA-AIRGLLAKPE-LELVGAWVHSAAKSGKDLGELAGLPDLGVIA---TNSIDAVLATLADAVIYA 75 (350)
T ss_pred CCceeEEeccchHHHH-HHHHHHcCCC-CceEEEEecCcccccccHHHhcCCCCceeEe---ecccccceeccccceeee
Confidence 8999999999999974 7888888887 999999999887753 344432222223332 267888888544455555
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEe-----cCCCCCHHHHHHHHHHhhcc
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQE-----KPAAANISEIENALSRYNSI 123 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~E-----KP~a~~~~e~~~l~~~a~~~ 123 (355)
..-+ . ++-..++|.+|++|.|- -|-...++.+.+..++|+++
T Consensus 76 ~~~~-~-~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAara 122 (350)
T COG3804 76 PLLP-S-VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARA 122 (350)
T ss_pred cccc-h-HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhc
Confidence 5444 3 88889999999999998 78899999999999999996
No 61
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.15 E-value=2.6e-06 Score=76.74 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=69.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+++|||+|.+++. |+..+....+ ++-+.||+++++++++++++.+.. ++...+ ++.++++.+ .|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~-~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~~--~~~~~av~~--aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARA-HLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTAEP--LDGEAIPEA--VDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHH-HHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCeeEE--CCHHHHhhc--CCEEEEccC
Confidence 48999999999985 8998876444 567899999999999999865433 222222 788988875 999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018445 83 GQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~E 103 (355)
... .++...++.|.||..=
T Consensus 198 s~~--Pl~~~~~~~g~hi~~i 216 (304)
T PRK07340 198 SRT--PVYPEAARAGRLVVAV 216 (304)
T ss_pred CCC--ceeCccCCCCCEEEec
Confidence 774 4445568899998874
No 62
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=98.15 E-value=1.8e-05 Score=61.06 Aligned_cols=97 Identities=25% Similarity=0.307 Sum_probs=69.4
Q ss_pred EEEEe-cccccchhccchhhhcCCeEEEEEEEeC-CHHHHHHHHHHHh----------------h----hcCCccccccC
Q 018445 5 IAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSR-SEESAKSAAEVAR----------------K----HFADVECVWGD 62 (355)
Q Consensus 5 igiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~-~~~~~~~~~~~~~----------------~----~~~~~~~~~~~ 62 (355)
|.|+| +|.||+. -+..++++++.++|+++... +.+.+...+.+++ + ..+++...++.
T Consensus 1 i~ILGsTGSIG~q-tLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~ 79 (129)
T PF02670_consen 1 IAILGSTGSIGTQ-TLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP 79 (129)
T ss_dssp EEEESTTSHHHHH-HHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred CEEEcCCcHHHHH-HHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence 57888 7889986 79999999988999996654 4444433333211 0 01233334444
Q ss_pred cchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEE
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~ 102 (355)
+.+.++.+.+++|.|+.+..-..-...+.+|+++||.|.+
T Consensus 80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 6678899889999999999999999999999999999875
No 63
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.15 E-value=2.6e-06 Score=77.87 Aligned_cols=104 Identities=14% Similarity=0.219 Sum_probs=75.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+++|||+|.++.. |+.++....+ ++-+.++++++++++.++++.++.+ ++... .++|+++++.+ .|+|+.+||
T Consensus 133 ~~v~IiGaG~~a~~-~~~al~~~~~-~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~-~~~d~~~al~~--aDiVi~aT~ 206 (330)
T PRK08291 133 SRAAVIGAGEQARL-QLEALTLVRP-IREVRVWARDAAKAEAYAADLRAEL-GIPVT-VARDVHEAVAG--ADIIVTTTP 206 (330)
T ss_pred CEEEEECCCHHHHH-HHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHhhcc-CceEE-EeCCHHHHHcc--CCEEEEeeC
Confidence 48999999999975 8888876544 7888999999999999988653322 33321 13788999986 799999998
Q ss_pred CcccHHHHH-HHHHcCCeEEEecCCCCCHHHHHHHH
Q 018445 83 GQAQVDTSL-KLLKAGKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 83 ~~~H~~~~~-~al~~GkhVl~EKP~a~~~~e~~~l~ 117 (355)
... +++. ..++.|.||.+ +..+....+++.
T Consensus 207 s~~--p~i~~~~l~~g~~v~~---vg~d~~~~rEld 237 (330)
T PRK08291 207 SEE--PILKAEWLHPGLHVTA---MGSDAEHKNEIA 237 (330)
T ss_pred CCC--cEecHHHcCCCceEEe---eCCCCCCcccCC
Confidence 753 4443 45899999987 555555555543
No 64
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.13 E-value=0.00052 Score=59.08 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=94.8
Q ss_pred CCceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHH--HHHHHHHhhhcCCccccccCcchhhhhcCCCccEE
Q 018445 1 MAPRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESA--KSAAEVARKHFADVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 1 m~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V 77 (355)
|.|||+|+|+ |+||+. .++.+.+.++ ++|++..++.+... +.+.+......-+++.. ++ ..+...+.|++
T Consensus 1 ~~iki~V~Ga~GRMG~~-ii~~v~~~~~-~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~---~~--~~~~~~~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRT-LIRAVLEAPD-LELVAAFDRPGSLSLGSDAGELAGLGLLGVPVT---DD--LLLVKADADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHH-HHHHHhcCCC-ceEEEEEecCCccccccchhhhccccccCceee---cc--hhhcccCCCEE
Confidence 6799999998 899986 8888888876 99999999976532 11111000011133321 44 33334559999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH---
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE--- 154 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--- 154 (355)
+-.|.|..-.+.+..|+++|+++.+=- -..|.++..+|.+++++. +++ ++.|+ +=.+.-+.++++.
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGT-TGf~~e~~~~l~~~a~~v------~vv--~a~Nf--SiGvnll~~l~~~aak 142 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGT-TGFTEEQLEKLREAAEKV------PVV--IAPNF--SLGVNLLFKLAEQAAK 142 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEEC-CCCCHHHHHHHHHHHhhC------CEE--Eeccc--hHHHHHHHHHHHHHHH
Confidence 999999999999999999997655532 256777788888888773 433 33333 3334444444432
Q ss_pred -hC--CeeEEEEE
Q 018445 155 -IG--DMMSVQVI 164 (355)
Q Consensus 155 -iG--~i~~v~~~ 164 (355)
++ +|--++++
T Consensus 143 ~l~~~DiEIiE~H 155 (266)
T COG0289 143 VLDDYDIEIIEAH 155 (266)
T ss_pred hcCCCCEEehhhh
Confidence 77 56555554
No 65
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.11 E-value=9.4e-07 Score=65.29 Aligned_cols=89 Identities=12% Similarity=0.223 Sum_probs=67.2
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
+-|++|+|+|+.|.. .+....+..+ +.+++++|.++++.-. ...+++.. .+.++|.+.-++|..+|++
T Consensus 3 ~~~v~ivGag~~G~a-~~~~~~~~~g-~~i~~~~dv~~~~~G~-------~i~gipV~---~~~~~l~~~~~i~iaii~V 70 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRA-LLYNGFSMRG-FGIVAVFDVDPEKIGK-------EIGGIPVY---GSMDELEEFIEIDIAIITV 70 (96)
T ss_dssp TEEEEEETTTSHHHH-HHHHHHHHHC-ECEEEEEEECTTTTTS-------EETTEEEE---SSHHHHHHHCTTSEEEEES
T ss_pred CCeEEEECCCCcHHH-HHHhHHHHcC-CCCEEEEEcCCCccCc-------EECCEEee---ccHHHhhhhhCCCEEEEEc
Confidence 358999999999875 3333344444 8999999999997542 22356542 6888888865699999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018445 82 AGQAQVDTSLKLLKAG-KHVIQ 102 (355)
Q Consensus 82 p~~~H~~~~~~al~~G-khVl~ 102 (355)
|+..-.+.+.+++++| |.|++
T Consensus 71 P~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999 55544
No 66
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.11 E-value=5e-05 Score=77.38 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=104.5
Q ss_pred CCceEEEEecccccchhccchhhhc-------CCeEEEEEEEeCCHHHH-------HHHHHHHhhhcCCccccccCcchh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI-------SDLVSLKFIWSRSEESA-------KSAAEVARKHFADVECVWGDNGLE 66 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~-------~~~~~vvai~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (355)
|+++|+|+|+|.+|.. .+..|.+. +-+++|++|++.+.... ..+.+..... ...+..+++-
T Consensus 464 ~~~~i~l~G~G~VG~~-~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~ 538 (819)
T PRK09436 464 QVLDVFVIGVGGVGGA-LLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEA----GEPFDLDRLI 538 (819)
T ss_pred ccccEEEEecCHHHHH-HHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhc----cCCCCHHHHH
Confidence 5789999999999986 77776532 22488999998643311 1222111111 0111013344
Q ss_pred hhhcCC--CccEEEEecCCcccHHHHHHHHHcCCeEEEe-c-CCCCCHHHHHHHHHHhhccCCCCCCCCeEEE-EecccC
Q 018445 67 QIIKED--SILGVAVVLAGQAQVDTSLKLLKAGKHVIQE-K-PAAANISEIENALSRYNSICPDPPGQPIWAV-AENYRF 141 (355)
Q Consensus 67 ell~~~--~~D~V~I~tp~~~H~~~~~~al~~GkhVl~E-K-P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v-~~~~r~ 141 (355)
+++... ..|+|+=||+...-.....+||++||||..- | |++.+.....+|.++|++. ++.+.. +...=-
T Consensus 539 ~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~------~~~~~yeatV~~g 612 (819)
T PRK09436 539 RLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKS------RRKFLYETNVGAG 612 (819)
T ss_pred HHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHc------CCeEEEeeeeccc
Confidence 455432 3589999999876677778999999998765 4 6677788999999999994 665553 444556
Q ss_pred chHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 142 EPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 142 ~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
-|....+++++..--+|..++..+.+
T Consensus 613 iPii~~l~~~~~~g~~i~~i~GilnG 638 (819)
T PRK09436 613 LPVIETLQNLLNAGDELLKFEGILSG 638 (819)
T ss_pred cchHHHHHHHHhccCcEEEEEEEEeC
Confidence 79999999988642468888887654
No 67
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.08 E-value=7.1e-05 Score=66.87 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred ceEEEEecccccchhccchhhhcC--CeEEEEEEEeCCH-HHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEIS--DLVSLKFIWSRSE-ESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~--~~~~vvai~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|||||||+|.||.. .+..|.+.+ ...+| .++++++ ++++.+.. .+ ++... ++..+++++ .|+|++
T Consensus 4 mkI~~IG~G~mG~a-ia~~l~~~g~~~~~~v-~v~~r~~~~~~~~l~~---~~--g~~~~---~~~~e~~~~--aDvVil 71 (279)
T PRK07679 4 QNISFLGAGSIAEA-IIGGLLHANVVKGEQI-TVSNRSNETRLQELHQ---KY--GVKGT---HNKKELLTD--ANILFL 71 (279)
T ss_pred CEEEEECccHHHHH-HHHHHHHCCCCCcceE-EEECCCCHHHHHHHHH---hc--CceEe---CCHHHHHhc--CCEEEE
Confidence 69999999999985 777777653 11344 5688875 45666554 22 33322 677888765 799999
Q ss_pred ecCCcccHHHHHHHHHc--CCeEEEecCCCCCHHHHHHHH
Q 018445 80 VLAGQAQVDTSLKLLKA--GKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~--GkhVl~EKP~a~~~~e~~~l~ 117 (355)
++|+..-.+++...... ..++++.==-+.+++..+++.
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 99999888877665432 234666533456777777654
No 68
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.07 E-value=4.3e-05 Score=69.05 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=74.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCC-CccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKED-SILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~-~~D~V~I~t 81 (355)
|||||||+|.||.. ....|.+.+ .+| .+||+++++.+.+.+ . ++... ++++|+.+.. +.|+|++++
T Consensus 1 m~Ig~IGlG~MG~~-mA~~L~~~g--~~v-~v~dr~~~~~~~~~~----~--g~~~~---~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGN-MARRLLRGG--HEV-VGYDRNPEAVEALAE----E--GATGA---DSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHH-HHHHHHHCC--CeE-EEEECCHHHHHHHHH----C--CCeec---CCHHHHHhhcCCCCEEEEEe
Confidence 48999999999986 788887654 565 568999999888754 2 33322 7899998753 479999999
Q ss_pred CCcccHH-HHHHHHHc--CCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 82 AGQAQVD-TSLKLLKA--GKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 82 p~~~H~~-~~~~al~~--GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
|+..+.+ ++..++.. ..+++++= -+.++...+++.+.+++.
T Consensus 68 ~~~~~~~~v~~~l~~~l~~g~ivid~-st~~~~~~~~~~~~~~~~ 111 (301)
T PRK09599 68 PAGEITDATIDELAPLLSPGDIVIDG-GNSYYKDDIRRAELLAEK 111 (301)
T ss_pred cCCcHHHHHHHHHHhhCCCCCEEEeC-CCCChhHHHHHHHHHHHc
Confidence 9985433 33333222 13566653 256667788888887773
No 69
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=98.06 E-value=5.6e-06 Score=66.73 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=68.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.++.|||+|++|+. .+..-....+++++++++|.+++..-. ...+++ .+.-+++++.+++.++|.+++|+|
T Consensus 85 tnviiVG~GnlG~A-ll~Y~f~~~~~~~iv~~FDv~~~~VG~-------~~~~v~-V~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRA-LLNYNFSKKNGMKIVAAFDVDPDKVGT-------KIGDVP-VYDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHH-HhcCcchhhcCceEEEEecCCHHHhCc-------ccCCee-eechHHHHHHHHhcCccEEEEEcc
Confidence 48999999999974 333222223449999999999985432 222443 233378999999889999999999
Q ss_pred CcccHHHHHHHHHcC-CeEEEecC
Q 018445 83 GQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 83 ~~~H~~~~~~al~~G-khVl~EKP 105 (355)
...-.+++...+++| |.++-=-|
T Consensus 156 a~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 156 AEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHHHHHHHHHcCCceEEeccc
Confidence 998889999999999 44444333
No 70
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.05 E-value=0.00011 Score=74.59 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=102.8
Q ss_pred CCceEEEEecccccchhccchhhhc--------CCeEEEEEEEeCCHHH-------HHHHHHHHhhhcCCccccccCcch
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI--------SDLVSLKFIWSRSEES-------AKSAAEVARKHFADVECVWGDNGL 65 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~--------~~~~~vvai~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (355)
|+++|+|+|+|.+|.. .+..|.+. +-+++|++|++++... ...+.+.+... ...+..+.+
T Consensus 457 ~~i~i~l~G~G~VG~~-l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~----~~~~~~~~~ 531 (810)
T PRK09466 457 KRIGLVLFGKGNIGSR-WLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDE----AVEWDEESL 531 (810)
T ss_pred ceEEEEEEecCCChHH-HHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhh----cCCccHHHH
Confidence 4689999999999986 67666532 2348999999876431 12222211111 111100233
Q ss_pred hhhhc--CCCccEEEEecCCcccHHHHHHHHHcCCeEEEe-c-CCCCCHHHHHHHHHHhhccCCCCCCCCeEEE-Eeccc
Q 018445 66 EQIIK--EDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQE-K-PAAANISEIENALSRYNSICPDPPGQPIWAV-AENYR 140 (355)
Q Consensus 66 ~ell~--~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~E-K-P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v-~~~~r 140 (355)
-|++. +.+.++|+=||+...-.....+||++||||..- | +++.......+|.+++++. |+.+.. +...=
T Consensus 532 ~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~------~~~~~yEasV~~ 605 (810)
T PRK09466 532 FLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKT------GRHWLYNATVGA 605 (810)
T ss_pred HHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHc------CCeEEEeceeee
Confidence 34444 233468999999887777778999999997764 5 4555678899999999994 665543 33444
Q ss_pred CchHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 141 FEPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 141 ~~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
--|....++.++..--+|..++..+.+
T Consensus 606 giPii~~l~~l~~~gd~i~~i~GIlnG 632 (810)
T PRK09466 606 GLPINHTVRDLRNSGDSILAISGIFSG 632 (810)
T ss_pred ccChHHHHHHHHhccCcEEEEEEEEcc
Confidence 568888888877652378999988765
No 71
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.04 E-value=4.4e-05 Score=68.76 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=73.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||||||+|.||.. ....|.+.+ .+| .+||+++++.+.+.+. +.... ++..+++++ .|+|++++|+
T Consensus 3 ~Ig~IGlG~mG~~-mA~~l~~~G--~~V-~v~d~~~~~~~~~~~~------g~~~~---~s~~~~~~~--aDvVi~~vp~ 67 (296)
T PRK15461 3 AIAFIGLGQMGSP-MASNLLKQG--HQL-QVFDVNPQAVDALVDK------GATPA---ASPAQAAAG--AEFVITMLPN 67 (296)
T ss_pred eEEEEeeCHHHHH-HHHHHHHCC--CeE-EEEcCCHHHHHHHHHc------CCccc---CCHHHHHhc--CCEEEEecCC
Confidence 8999999999985 777777655 455 6789999998887651 33222 678888876 7999999999
Q ss_pred cccHHHHHH----HH---HcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 84 QAQVDTSLK----LL---KAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 84 ~~H~~~~~~----al---~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
..+.+.+.. ++ +.| .++++. -+.++..++++.+..++.
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g-~lvid~-sT~~p~~~~~l~~~l~~~ 112 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRD-ALVIDM-STIHPLQTDKLIADMQAK 112 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCC-CEEEEC-CCCCHHHHHHHHHHHHHc
Confidence 876554432 12 222 355554 367888888888877773
No 72
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=98.04 E-value=0.00023 Score=63.70 Aligned_cols=211 Identities=14% Similarity=0.205 Sum_probs=140.1
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeC-CHHHHHHHHHHHhhhcCCc-------------------ccccc
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSR-SEESAKSAAEVARKHFADV-------------------ECVWG 61 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 61 (355)
.|+.|+| +|+||.. -+..++++|+.++|+++..- +.+.+.+-++ ++.|.. ....+
T Consensus 2 k~i~iLGSTGSIG~q-tLdVi~~~p~~f~vval~ag~n~~~l~~q~~---~f~P~~v~~~d~~~~~~l~~~~~~~~v~~G 77 (385)
T COG0743 2 KKLTILGSTGSIGTQ-TLDVIRRNPDKFEVVALAAGKNVELLAEQIR---EFKPKYVVIADESAAKELEDLLPGTEVLVG 77 (385)
T ss_pred ceEEEEecCCchhHH-HHHHHHhCCCcEEEEEEecCCcHHHHHHHHH---HhCCceEEecChHHHHHHHhhccCceEEec
Confidence 3899999 8999986 79999999999999996554 4444433332 443332 22334
Q ss_pred CcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHH-HHHHHHhhccCCCCCCCCeEEEEeccc
Q 018445 62 DNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEI-ENALSRYNSICPDPPGQPIWAVAENYR 140 (355)
Q Consensus 62 ~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~~~~~~v~~~~r 140 (355)
.+.+.|+.+.+++|.|+.+.--..-..-+.+|+++||.|.+--= .++--+ .-+.++++++ |..+..
T Consensus 78 ~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANK--EsLV~aG~l~~~~~k~~------g~~llP----- 144 (385)
T COG0743 78 EEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANK--ESLVTAGELVMDAAKES------GAQLLP----- 144 (385)
T ss_pred HHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecch--hhhhcccHHHHHHHHHc------CCEEec-----
Confidence 46778888889999999999999999999999999999876421 222222 3355777774 555543
Q ss_pred CchHHHHHHHHHHH--hCCeeEEEEEEeec-cCCCCC-----------ccCcccccc----ccCccccchhhHHHHHHHH
Q 018445 141 FEPAFVECKKLIAE--IGDMMSVQVIVEGS-MNSSNP-----------YFSSSWRRN----FTGGFILDMGVHFIAGLRM 202 (355)
Q Consensus 141 ~~p~~~~~k~~i~~--iG~i~~v~~~~~~~-~~~~~~-----------~~~~~w~~~----~~gg~l~d~g~H~id~~~~ 202 (355)
-+.-...+.+.++. -+.|..+-.+-++. +..+.- -..++|.=. .+.-.|++-|--.|... |
T Consensus 145 VDSEH~AifQ~L~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIEA~-~ 223 (385)
T COG0743 145 VDSEHNAIFQCLQGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIEAH-W 223 (385)
T ss_pred cCchhHHHHHHcCccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHHHH-H
Confidence 25556677777764 45566555554332 221110 013577531 33456777777777765 9
Q ss_pred HhCCcceeEEEeecccCCCCCCCceEEEEEEecCCc
Q 018445 203 ITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENGC 238 (355)
Q Consensus 203 l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~ 238 (355)
|||-+++.+....+ ...-.+.+++|.||.
T Consensus 224 LF~~~~~~IeVvIH-------PQSiIHsmV~~~DGS 252 (385)
T COG0743 224 LFGLPYEQIEVVIH-------PQSIIHSMVEYVDGS 252 (385)
T ss_pred HhCCCHHHeeEEEc-------ccchheeeEEeccCC
Confidence 99988888887664 244678899999995
No 73
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=98.04 E-value=1.2e-05 Score=76.09 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=46.5
Q ss_pred ccEEEEecCCcccHHHHHHHHHcC------CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 74 ILGVAVVLAGQAQVDTSLKLLKAG------KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 74 ~D~V~I~tp~~~H~~~~~~al~~G------khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
-.++++++||..|..++..+.++| ++|+||||++.|++.|++|.+...+.
T Consensus 110 n~lfYLA~PP~~f~~i~~~L~~~gl~~~g~~RIVvEKPFG~DL~SA~~Ln~~l~~~ 165 (482)
T TIGR00871 110 NRLFYLATPPSVFGTIIKQLKKHGLNEQGWSRVVVEKPFGHDLASAQELNKQLRAV 165 (482)
T ss_pred ceEEEEECChHHHHHHHHHHHHhCCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999998 69999999999999999999988775
No 74
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.02 E-value=7.7e-05 Score=66.16 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=55.8
Q ss_pred ceEEEEecccccchhccchhhhcCC--eEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISD--LVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~--~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
||||+||+|.||.. ....|.+.+. ..+|+...++++++.+.+.+ . ++... ++.++++++ .|+|++|
T Consensus 1 ~kI~~IG~G~mG~a-~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----~--g~~~~---~~~~e~~~~--aDvVil~ 68 (266)
T PLN02688 1 FRVGFIGAGKMAEA-IARGLVASGVVPPSRISTADDSNPARRDVFQS----L--GVKTA---ASNTEVVKS--SDVIILA 68 (266)
T ss_pred CeEEEECCcHHHHH-HHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----c--CCEEe---CChHHHHhc--CCEEEEE
Confidence 68999999999985 7888875431 12665444999998877653 2 44322 678888765 7999999
Q ss_pred cCCcccHHHHHHH
Q 018445 81 LAGQAQVDTSLKL 93 (355)
Q Consensus 81 tp~~~H~~~~~~a 93 (355)
+|+..-.++....
T Consensus 69 v~~~~~~~vl~~l 81 (266)
T PLN02688 69 VKPQVVKDVLTEL 81 (266)
T ss_pred ECcHHHHHHHHHH
Confidence 9876656665443
No 75
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=98.02 E-value=0.00046 Score=62.95 Aligned_cols=210 Identities=13% Similarity=0.221 Sum_probs=134.7
Q ss_pred eEEEEe-cccccchhccchhhhcCCeEEEEEEEeC-CHHHHHHHHHHHhhhcCC-----------------------ccc
Q 018445 4 RIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSR-SEESAKSAAEVARKHFAD-----------------------VEC 58 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~-~~~~~~~~~~~~~~~~~~-----------------------~~~ 58 (355)
||+|+| +|+||.. -+..++++++.++|++++.. +-+.+.+.+. ++.|. +..
T Consensus 3 ~i~IlGsTGSIG~q-tL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~---~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v 78 (389)
T TIGR00243 3 QIVILGSTGSIGKS-TLDVVRHNPDHFQVVALSAGKNVALMVEQIL---EFRPKFVAIDDEASLKDLKTMLQQQGSRTEV 78 (389)
T ss_pred eEEEEecChHHHHH-HHHHHHhCccccEEEEEEcCCCHHHHHHHHH---HcCCCEEEEcCHHHHHHHHHHhhcCCCCcEE
Confidence 899999 7889986 78888888888999998764 3334333333 33222 122
Q ss_pred cccCcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHH-HHHhhccCCCCCCCCeEEEEe
Q 018445 59 VWGDNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENA-LSRYNSICPDPPGQPIWAVAE 137 (355)
Q Consensus 59 ~~~~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~~~~~~v~~ 137 (355)
..+.+.+.++.+.+++|.|+.+..-..-...+.+|+++||.|.+-- =.++--+-++ ..+++++ +..+..
T Consensus 79 ~~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN--KEsLV~aG~li~~~a~~~------~~~I~P-- 148 (389)
T TIGR00243 79 LVGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALAN--KESLVTAGHLFLDAVKKY------GVQLLP-- 148 (389)
T ss_pred EECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec--hhHHHhhHHHHHHHHHHc------CCeEEe--
Confidence 2233467777888889999999999999999999999999876642 1333334444 4677773 544332
Q ss_pred cccCchHHHHHHHHHHH---hCCeeEEEEEEeec-cCCCCC-----------ccCcccccc----ccCccccchhhHHHH
Q 018445 138 NYRFEPAFVECKKLIAE---IGDMMSVQVIVEGS-MNSSNP-----------YFSSSWRRN----FTGGFILDMGVHFIA 198 (355)
Q Consensus 138 ~~r~~p~~~~~k~~i~~---iG~i~~v~~~~~~~-~~~~~~-----------~~~~~w~~~----~~gg~l~d~g~H~id 198 (355)
-+.-.-.+.+.+++ ..+|..+..+-++. +..... -..++|.=. .+.-.|++-|.--|.
T Consensus 149 ---VDSEHsAIfQ~L~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvIE 225 (389)
T TIGR00243 149 ---VDSEHNAIFQSLQHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYIE 225 (389)
T ss_pred ---ecchHhHHHHHcccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHH
Confidence 24444555555552 12366666554432 221110 013567521 334466667667777
Q ss_pred HHHHHhCCcceeEEEeecccCCCCCCCceEEEEEEecCCc
Q 018445 199 GLRMITGCEVVSVSAITSHIDKTLPPPDNISSNFQLENGC 238 (355)
Q Consensus 199 ~~~~l~G~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~ 238 (355)
.. ||||-++.++....+ .....+.+++|.||.
T Consensus 226 A~-~LF~~~~d~I~vvIH-------pqSiIHsmVef~DGS 257 (389)
T TIGR00243 226 AR-WLFGASAEQIDVLIH-------PQSIIHSMVEFQDGS 257 (389)
T ss_pred HH-HHcCCCHHHeEEEEC-------CCCceeEEEEEcCcc
Confidence 65 999977788888763 355788999999995
No 76
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00015 Score=63.32 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=94.3
Q ss_pred ceEEEEecccccchhccchhhhcCC-eEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISD-LVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~-~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
+|||+||+|+||.. .+..|.+.+. ...-+-++++++++++.+.+ ++ ++.. +++.+++.+. .|+|+++.
T Consensus 2 ~~IgfIG~G~Mg~A-i~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~---~~--g~~~---~~~~~~~~~~--advv~Lav 70 (266)
T COG0345 2 MKIGFIGAGNMGEA-ILSGLLKSGALPPEEIIVTNRSEEKRAALAA---EY--GVVT---TTDNQEAVEE--ADVVFLAV 70 (266)
T ss_pred ceEEEEccCHHHHH-HHHHHHhcCCCCcceEEEeCCCHHHHHHHHH---Hc--CCcc---cCcHHHHHhh--CCEEEEEe
Confidence 68999999999985 7888876551 23566899999999986665 34 3332 2777888876 79999999
Q ss_pred CCcccHHHHHHHHH--cCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEE-------------EecccCchHH-
Q 018445 82 AGQAQVDTSLKLLK--AGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAV-------------AENYRFEPAF- 145 (355)
Q Consensus 82 p~~~H~~~~~~al~--~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v-------------~~~~r~~p~~- 145 (355)
.|....++....-. .+|.|+. =-...+.+..++++. .. +=+.+|. ..+..-++..
T Consensus 71 KPq~~~~vl~~l~~~~~~~lvIS-iaAGv~~~~l~~~l~--~~------~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~ 141 (266)
T COG0345 71 KPQDLEEVLSKLKPLTKDKLVIS-IAAGVSIETLERLLG--GL------RVVRVMPNTPALVGAGVTAISANANVSEEDK 141 (266)
T ss_pred ChHhHHHHHHHhhcccCCCEEEE-EeCCCCHHHHHHHcC--CC------ceEEeCCChHHHHcCcceeeecCccCCHHHH
Confidence 99888888877532 4554443 345778888887775 11 1222222 2222333333
Q ss_pred HHHHHHHHHhCCeeEEE
Q 018445 146 VECKKLIAEIGDMMSVQ 162 (355)
Q Consensus 146 ~~~k~~i~~iG~i~~v~ 162 (355)
..+.++++.+|++..+.
T Consensus 142 ~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 142 AFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHHHHHHHhcCCeEEec
Confidence 36666666699998887
No 77
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.02 E-value=5.4e-05 Score=66.73 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=82.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
+|||+||+|.||.. ...+|.+.+ .++ .++|++++++..... .. +.... ++..|+.+. .|+|+.+.|
T Consensus 1 ~kIafIGLG~MG~p-mA~~L~~aG--~~v-~v~~r~~~ka~~~~~---~~--Ga~~a---~s~~eaa~~--aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSP-MAANLLKAG--HEV-TVYNRTPEKAAELLA---AA--GATVA---ASPAEAAAE--ADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHH-HHHHHHHCC--CEE-EEEeCChhhhhHHHH---Hc--CCccc---CCHHHHHHh--CCEEEEecC
Confidence 58999999999986 788888755 455 788999999554443 22 33322 778888887 899999999
Q ss_pred CcccHHHHHH----HHH---cCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEec
Q 018445 83 GQAQVDTSLK----LLK---AGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAEN 138 (355)
Q Consensus 83 ~~~H~~~~~~----al~---~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~ 138 (355)
+..|..-+.. .++ .|+ ++++- -+.+++.++++.+.+++. |..++-+-.
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~-i~IDm-STisp~~a~~~a~~~~~~------G~~~lDAPV 121 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGA-IVIDM-STISPETARELAAALAAK------GLEFLDAPV 121 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCC-EEEEC-CCCCHHHHHHHHHHHHhc------CCcEEecCc
Confidence 9999887764 222 233 44442 288999999999999994 666555433
No 78
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.00 E-value=1.5e-05 Score=72.74 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=69.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+++|||+|.+++. |+.++....+ ++-+.|++|++++++.++++..+.+ ++.... ++++++.+.+ .|+|+.+||
T Consensus 130 ~~v~iiGaG~qA~~-~~~al~~~~~-i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~-~~~~~~av~~--aDiVvtaT~ 203 (326)
T TIGR02992 130 SVVAIFGAGMQARL-QLEALTLVRD-IRSARIWARDSAKAEALALQLSSLL-GIDVTA-ATDPRAAMSG--ADIIVTTTP 203 (326)
T ss_pred cEEEEECCCHHHHH-HHHHHHHhCC-ccEEEEECCCHHHHHHHHHHHHhhc-CceEEE-eCCHHHHhcc--CCEEEEecC
Confidence 37999999999985 8888875554 7888999999999999988653322 232211 2788888875 899999998
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018445 83 GQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~ 102 (355)
... .-+-...++.|.||..
T Consensus 204 s~~-p~i~~~~l~~g~~i~~ 222 (326)
T TIGR02992 204 SET-PILHAEWLEPGQHVTA 222 (326)
T ss_pred CCC-cEecHHHcCCCcEEEe
Confidence 854 2223467899998873
No 79
>PLN02700 homoserine dehydrogenase family protein
Probab=97.97 E-value=0.00015 Score=66.44 Aligned_cols=158 Identities=9% Similarity=0.094 Sum_probs=98.5
Q ss_pred CCceEEEEecccccchhccchhhh-------cCCeEEEEEEEeCCHHHH-----------HHHHHHHh--hhcCCcccc-
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAE-------ISDLVSLKFIWSRSEESA-----------KSAAEVAR--KHFADVECV- 59 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~-------~~~~~~vvai~d~~~~~~-----------~~~~~~~~--~~~~~~~~~- 59 (355)
|.++|+|||+|.+|.. .+..|.+ .+-+++|++|++...--. +.+.++.. .........
T Consensus 2 ~~i~i~liG~G~VG~~-ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~ 80 (377)
T PLN02700 2 KKIPVLLLGCGGVGRH-LLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALG 80 (377)
T ss_pred cEEEEEEEecChHHHH-HHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhh
Confidence 3579999999999986 6766542 122388999988522111 11111100 000011000
Q ss_pred --------cc-------CcchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHhhc
Q 018445 60 --------WG-------DNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQE--KPAAANISEIENALSRYNS 122 (355)
Q Consensus 60 --------~~-------~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~E--KP~a~~~~e~~~l~~~a~~ 122 (355)
|. ..+..+.+.....++++=||+...-.++..++|++|+||..- ||++...++..+|. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la---~~ 157 (377)
T PLN02700 81 ALAGGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLA---AH 157 (377)
T ss_pred hccccccccccccccchhhhHHHHhhccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHH---Hc
Confidence 00 012234343334589999999977789999999999998764 47788888876665 33
Q ss_pred cCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCeeEEEEEEeec
Q 018445 123 ICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMSVQVIVEGS 168 (355)
Q Consensus 123 ~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i~~v~~~~~~~ 168 (355)
+....+-+..---.|....+++++..--+|..++..+++.
T Consensus 158 ------~~~~~yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT 197 (377)
T PLN02700 158 ------PRRIRHESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGT 197 (377)
T ss_pred ------CCeEEEEeeeeeccchHHHHHHHhhccCCEEEEEEEEeCh
Confidence 2344444555667799999999987534689998887653
No 80
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.94 E-value=5.7e-05 Score=67.92 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=71.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||||||+|.||.. ....|.+.+ .+|+ ++|+++++.+.+.+ . +.... ++.++++++ .|+|+++.|+
T Consensus 1 ~IgvIG~G~mG~~-iA~~l~~~G--~~V~-~~dr~~~~~~~~~~----~--g~~~~---~~~~~~~~~--aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSP-MSINLAKAG--YQLH-VTTIGPEVADELLA----A--GAVTA---ETARQVTEQ--ADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHH-HHHHHHHCC--CeEE-EEcCCHHHHHHHHH----C--CCccc---CCHHHHHhc--CCEEEEecCC
Confidence 6999999999986 677777654 5664 78999999888765 2 22221 678888876 8999999999
Q ss_pred cccHHHHH---H-HH---HcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 84 QAQVDTSL---K-LL---KAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 84 ~~H~~~~~---~-al---~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
..+...+. . ++ ..| .+++.- -+.++...+++.+..++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g-~iivd~-st~~~~~~~~l~~~l~~ 109 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPG-KTLVDM-SSISPIESKRFAKAVKE 109 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCC-CEEEEC-CCCCHHHHHHHHHHHHH
Confidence 76665442 1 22 223 355552 25667778888888777
No 81
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.85 E-value=9.6e-05 Score=66.34 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=69.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||||||+|.||.. ....|.+.+ .+|. ++|+++. .+.+.+ . +.... .+..++.+. .|+|++++|
T Consensus 1 m~Ig~IGlG~MG~~-ma~~L~~~G--~~v~-v~~~~~~-~~~~~~----~--g~~~~---~s~~~~~~~--advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGLGIMGTP-MAINLARAG--HQLH-VTTIGPV-ADELLS----L--GAVSV---ETARQVTEA--SDIIFIMVP 64 (292)
T ss_pred CeEEEEccCHHHHH-HHHHHHHCC--CeEE-EEeCCHh-HHHHHH----c--CCeec---CCHHHHHhc--CCEEEEeCC
Confidence 48999999999985 778887654 5664 7788874 444432 2 33322 678888765 799999999
Q ss_pred CcccHHHHH-------HHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 83 GQAQVDTSL-------KLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 83 ~~~H~~~~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+..+.+-+. ..+..| .++++- -+.++++++++.+.+++.
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~-sT~~p~~~~~~~~~~~~~ 110 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKG-KTIVDM-SSISPIETKRFARQVNEL 110 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCC-CEEEEC-CCCCHHHHHHHHHHHHHc
Confidence 985433332 112223 355553 478889999999988874
No 82
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.84 E-value=2.4e-05 Score=71.85 Aligned_cols=97 Identities=22% Similarity=0.214 Sum_probs=64.1
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccc---cccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVEC---VWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~ell~~~~~D~V 77 (355)
+||+|+|+ |.+|.. .++.+..++. ++|+++++..+...+.+.+..... +.+... .....++++.. ..++|+|
T Consensus 1 ~kVaIvGatG~~G~~-L~~~l~~~~~-~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQK-FVKLLAKHPY-FELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVA-SKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHH-HHHHHHhCCC-ceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHH-hccCCEE
Confidence 68999996 667764 7787777776 899999987655444443311000 001110 00002223221 1469999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl~ 102 (355)
+.++|+..|.+++.+++++|++|+.
T Consensus 78 f~a~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999987
No 83
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=3.5e-05 Score=69.87 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=66.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|+|||+|.+|.. ++..+....+ ++=+.+++|++++++.++++..+....+.. .++.++.+.+ .|+|+.+||
T Consensus 126 ~~v~iiG~G~~a~~-~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~---~~~~~~av~~--aDIVi~aT~ 198 (314)
T PRK06141 126 SRLLVVGTGRLASL-LALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQGFDAEV---VTDLEAAVRQ--ADIISCATL 198 (314)
T ss_pred ceEEEECCcHHHHH-HHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhcCCceEE---eCCHHHHHhc--CCEEEEeeC
Confidence 48999999999985 7776665434 555689999999999999865433212322 2788888875 899988888
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018445 83 GQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~E 103 (355)
.. +.-+-.+.++.|.||.+=
T Consensus 199 s~-~pvl~~~~l~~g~~i~~i 218 (314)
T PRK06141 199 ST-EPLVRGEWLKPGTHLDLV 218 (314)
T ss_pred CC-CCEecHHHcCCCCEEEee
Confidence 66 433334678899988763
No 84
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.83 E-value=7.1e-05 Score=62.31 Aligned_cols=111 Identities=17% Similarity=0.239 Sum_probs=57.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc----CCc----------cccccCcchhhh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF----ADV----------ECVWGDNGLEQI 68 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~el 68 (355)
|||+|||+|..|.. ..-.+...+ .+|+++ |.++++.+.+.+ ... |+. .....++++++.
T Consensus 1 M~I~ViGlGyvGl~-~A~~lA~~G--~~V~g~-D~~~~~v~~l~~---g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a 73 (185)
T PF03721_consen 1 MKIAVIGLGYVGLP-LAAALAEKG--HQVIGV-DIDEEKVEALNN---GELPIYEPGLDELLKENVSAGRLRATTDIEEA 73 (185)
T ss_dssp -EEEEE--STTHHH-HHHHHHHTT--SEEEEE--S-HHHHHHHHT---TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH
T ss_pred CEEEEECCCcchHH-HHHHHHhCC--CEEEEE-eCChHHHHHHhh---ccccccccchhhhhccccccccchhhhhhhhh
Confidence 79999999999975 566666654 688766 999999888764 111 110 001112677777
Q ss_pred hcCCCccEEEEecCCcccH------H-------HHHHHHHcCCeEEEec--CCCCCHHHHHHHHHHhhc
Q 018445 69 IKEDSILGVAVVLAGQAQV------D-------TSLKLLKAGKHVIQEK--PAAANISEIENALSRYNS 122 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H~------~-------~~~~al~~GkhVl~EK--P~a~~~~e~~~l~~~a~~ 122 (355)
+.+ .|+++||.|+.... . .+...++.|+-|.+|- |...+-+..+.+++....
T Consensus 74 i~~--adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 74 IKD--ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG 140 (185)
T ss_dssp HHH---SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred hhc--cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence 766 78888887765321 2 2223333455666666 334444445555555443
No 85
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.82 E-value=6.9e-05 Score=67.97 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=68.7
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC--HHHHHHHHHH--HhhhcCC--ccc------cc--------c
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS--EESAKSAAEV--ARKHFAD--VEC------VW--------G 61 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~--~~~~~~~~~~--~~~~~~~--~~~------~~--------~ 61 (355)
++||||+|+|+||+. |++.+.+.++ ++|++|+|++ ++....+.+. ....+++ +.. .+ .
T Consensus 5 ~lrVaI~G~GrIGr~-~~r~~~~~~~-velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~ 82 (338)
T PLN02358 5 KIRIGINGFGRIGRL-VARVVLQRDD-VELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 82 (338)
T ss_pred ceEEEEEeecHHHHH-HHHHHhhCCC-cEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence 589999999999985 8998887766 9999999975 3333332210 0001222 111 00 0
Q ss_pred Ccchhhh-hcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 62 DNGLEQI-IKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 62 ~~~~~el-l~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
..+.+++ ..+.++|+|+-||......+.+..++++| |-|++--|
T Consensus 83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC
Confidence 0223344 23357999999999999999999999999 66777655
No 86
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.80 E-value=0.00018 Score=65.20 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=56.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.||+|||+|.+|.. +...+.+.+...+ +.++|+++++.+.+.+ . ++.... .++.++.+++ .|+|++|+|
T Consensus 7 ~~I~IIG~G~mG~s-la~~l~~~g~~~~-V~~~dr~~~~~~~a~~----~--g~~~~~-~~~~~~~~~~--aDvViiavp 75 (307)
T PRK07502 7 DRVALIGIGLIGSS-LARAIRRLGLAGE-IVGADRSAETRARARE----L--GLGDRV-TTSAAEAVKG--ADLVILCVP 75 (307)
T ss_pred cEEEEEeeCHHHHH-HHHHHHhcCCCcE-EEEEECCHHHHHHHHh----C--CCCcee-cCCHHHHhcC--CCEEEECCC
Confidence 48999999999985 7777776542124 4688999988776643 2 221111 1567777764 899999999
Q ss_pred CcccHHHHHHHH
Q 018445 83 GQAQVDTSLKLL 94 (355)
Q Consensus 83 ~~~H~~~~~~al 94 (355)
+..+.+++....
T Consensus 76 ~~~~~~v~~~l~ 87 (307)
T PRK07502 76 VGASGAVAAEIA 87 (307)
T ss_pred HHHHHHHHHHHH
Confidence 988877766543
No 87
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.78 E-value=0.0003 Score=67.21 Aligned_cols=113 Identities=17% Similarity=0.277 Sum_probs=80.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~t 81 (355)
.+||+||+|.||.. ...+|.+.+ ++| .+|||++++.+.+.+..... +........+++|+.+. ..+|+|+++.
T Consensus 7 ~~IG~IGLG~MG~~-mA~nL~~~G--~~V-~V~NRt~~k~~~l~~~~~~~--Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 7 SRIGLAGLAVMGQN-LALNIAEKG--FPI-SVYNRTTSKVDETVERAKKE--GNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCEEEEeeHHHHHH-HHHHHHhCC--CeE-EEECCCHHHHHHHHHhhhhc--CCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 48999999999986 788888754 566 68999999999887621111 22111112789999875 4589999999
Q ss_pred CCcccHHHHHH----HHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 82 AGQAQVDTSLK----LLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 82 p~~~H~~~~~~----al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
|+....+-+.. .++.| .|+++= -+.++.+++++.+.+++.
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G-~iiID~-sT~~~~~t~~~~~~l~~~ 124 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPG-DCIIDG-GNEWYENTERRIKEAAEK 124 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCC-CEEEEC-CCCCHHHHHHHHHHHHHc
Confidence 99988766532 33334 477774 356688999998888773
No 88
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.78 E-value=8.3e-05 Score=60.31 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=59.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh--hhcCCcc---ccccCcchhhhhcCCCccEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR--KHFADVE---CVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~ell~~~~~D~V~ 78 (355)
||+|||+|.+|.. ....+..++ .+| -+++++++..+.+.+.-. .+.|+.. ....++|+++.+++ .|+++
T Consensus 1 KI~ViGaG~~G~A-lA~~la~~g--~~V-~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTA-LAALLADNG--HEV-TLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED--ADIII 74 (157)
T ss_dssp EEEEESSSHHHHH-HHHHHHHCT--EEE-EEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---SEEE
T ss_pred CEEEECcCHHHHH-HHHHHHHcC--CEE-EEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--ccEEE
Confidence 7999999999974 555555554 344 788999988888776321 1233321 01113789999987 79999
Q ss_pred EecCCcccHHHHHHHHH
Q 018445 79 VVLAGQAQVDTSLKLLK 95 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~ 95 (355)
+++|...|.+++.+...
T Consensus 75 iavPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAP 91 (157)
T ss_dssp E-S-GGGHHHHHHHHTT
T ss_pred ecccHHHHHHHHHHHhh
Confidence 99999999999887655
No 89
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.77 E-value=0.00022 Score=62.17 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=78.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.|||+||+|.||.. ...+|.+.+ ..| -|+|++.++.+.+++. +.... ++..|+.++ .|+|+.+.|
T Consensus 36 ~~iGFIGLG~MG~~-M~~nLik~G--~kV-tV~dr~~~k~~~f~~~------Ga~v~---~sPaeVae~--sDvvitmv~ 100 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSA-MVSNLIKAG--YKV-TVYDRTKDKCKEFQEA------GARVA---NSPAEVAED--SDVVITMVP 100 (327)
T ss_pred ceeeEEeeccchHH-HHHHHHHcC--CEE-EEEeCcHHHHHHHHHh------chhhh---CCHHHHHhh--cCEEEEEcC
Confidence 48999999999985 788888765 455 6889999999999873 44333 899999998 899999999
Q ss_pred CcccHHHHHH-------HHHcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 83 GQAQVDTSLK-------LLKAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 83 ~~~H~~~~~~-------al~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
+..|..-+.. .+..|+..+++- -+.+++-+++|.+.++.
T Consensus 101 ~~~~v~~v~~g~~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~ 146 (327)
T KOG0409|consen 101 NPKDVKDVLLGKSGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISN 146 (327)
T ss_pred ChHhhHHHhcCCCcceeeccCCCceEEec-cccCHHHHHHHHHHHHh
Confidence 9988776542 222333333332 16777888888888777
No 90
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.76 E-value=0.00058 Score=61.28 Aligned_cols=101 Identities=8% Similarity=0.065 Sum_probs=73.0
Q ss_pred EEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCCccc
Q 018445 7 ILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 7 iiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~~H 86 (355)
|||+|.||.. ....|.+.+ .+| .+||+++++.+.+.+ . ++... ++..+++++ .|+|+++.|+..+
T Consensus 1 ~IGlG~mG~~-mA~~L~~~G--~~V-~v~dr~~~~~~~l~~----~--g~~~~---~s~~~~~~~--advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGP-MAANLLKAG--HPV-RVFDLFPDAVEEAVA----A--GAQAA---ASPAEAAEG--ADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHH-HHHHHHhCC--CeE-EEEeCCHHHHHHHHH----c--CCeec---CCHHHHHhc--CCEEEEeCCChHH
Confidence 5899999985 777777654 454 678999999888765 2 33222 688898886 7999999999777
Q ss_pred HHHHH----HHHHcC--CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 87 VDTSL----KLLKAG--KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 87 ~~~~~----~al~~G--khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
.+-+. ..+..- ..++++-- +.++..++++.+.+++.
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~ 107 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH 107 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc
Confidence 55443 222221 24666655 89999999999988873
No 91
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.72 E-value=0.00043 Score=66.01 Aligned_cols=142 Identities=15% Similarity=0.202 Sum_probs=87.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~tp 82 (355)
+|||||+|.||.. ...+|.+.+ .+| .++|+++++.+.+.+........+.. +++++|+++. +++|+|+++.|
T Consensus 3 ~IgvIGLG~MG~~-lA~nL~~~G--~~V-~v~dr~~~~~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~v~ 75 (470)
T PTZ00142 3 DIGLIGLAVMGQN-LALNIASRG--FKI-SVYNRTYEKTEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILLIK 75 (470)
T ss_pred EEEEEeEhHHHHH-HHHHHHHCC--CeE-EEEeCCHHHHHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEEeC
Confidence 8999999999986 788888765 454 68899999999887632211111211 3789999975 35899999977
Q ss_pred CcccH-HHHHHHH---HcCCeEEEecCCCCCHHHHHHHHHHhhccCCCC------------CCCCeEEEEecccCchHHH
Q 018445 83 GQAQV-DTSLKLL---KAGKHVIQEKPAAANISEIENALSRYNSICPDP------------PGQPIWAVAENYRFEPAFV 146 (355)
Q Consensus 83 ~~~H~-~~~~~al---~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~------------~~~~~~~v~~~~r~~p~~~ 146 (355)
+.... +++...+ +.| .++++= -+.+..+..++.+..++.|-.+ .+|..+|+|=.. ..+.
T Consensus 76 ~~~~v~~vi~~l~~~L~~g-~iIID~-gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~---~a~~ 150 (470)
T PTZ00142 76 AGEAVDETIDNLLPLLEKG-DIIIDG-GNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNK---EAYD 150 (470)
T ss_pred ChHHHHHHHHHHHhhCCCC-CEEEEC-CCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCH---HHHH
Confidence 76544 4433332 223 466663 2334677777777766631000 013345555543 3566
Q ss_pred HHHHHHHHhCC
Q 018445 147 ECKKLIAEIGD 157 (355)
Q Consensus 147 ~~k~~i~~iG~ 157 (355)
+++.+++.+|.
T Consensus 151 ~~~piL~~ia~ 161 (470)
T PTZ00142 151 HVKDILEKCSA 161 (470)
T ss_pred HHHHHHHHHhh
Confidence 77777766554
No 92
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.71 E-value=0.00019 Score=63.90 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=64.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||+|||+|.||.. +...|.+.+...+| .++|+++++.+.+.+ . ++.... .+++++. + .|+|++|+|
T Consensus 1 m~I~iIG~G~mG~s-la~~l~~~g~~~~v-~~~d~~~~~~~~~~~----~--g~~~~~--~~~~~~~-~--aD~Vilavp 67 (275)
T PRK08507 1 MKIGIIGLGLMGGS-LGLALKEKGLISKV-YGYDHNELHLKKALE----L--GLVDEI--VSFEELK-K--CDVIFLAIP 67 (275)
T ss_pred CEEEEEccCHHHHH-HHHHHHhcCCCCEE-EEEcCCHHHHHHHHH----C--CCCccc--CCHHHHh-c--CCEEEEeCc
Confidence 48999999999986 77888765432354 457999988777643 2 322122 5677754 2 899999999
Q ss_pred CcccHHHHHHHHH--cCCeEEEecCCCCCHHHHH
Q 018445 83 GQAQVDTSLKLLK--AGKHVIQEKPAAANISEIE 114 (355)
Q Consensus 83 ~~~H~~~~~~al~--~GkhVl~EKP~a~~~~e~~ 114 (355)
+....+++..... .|+ +++. ++.+.....
T Consensus 68 ~~~~~~~~~~l~~l~~~~-iv~d--~gs~k~~i~ 98 (275)
T PRK08507 68 VDAIIEILPKLLDIKENT-TIID--LGSTKAKII 98 (275)
T ss_pred HHHHHHHHHHHhccCCCC-EEEE--CccchHHHH
Confidence 9998888876543 333 6665 444444333
No 93
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=97.69 E-value=0.00018 Score=68.60 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=46.1
Q ss_pred CccEEEEecCCcccHHHHHHHHHcC-------CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 73 SILGVAVVLAGQAQVDTSLKLLKAG-------KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 73 ~~D~V~I~tp~~~H~~~~~~al~~G-------khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
...++++++||..+..++..+.++| ..|.+|||++.|++.|++|.+...+.
T Consensus 117 ~nrlFYLAvPPs~F~~I~~~L~~~gl~~~~g~~RIVIEKPFG~DL~SA~~Ln~~l~~~ 174 (495)
T PRK05722 117 GNRVFYLATPPSLFGTICENLAAAGLNEGGGWRRVVIEKPFGHDLASARELNDQVGEV 174 (495)
T ss_pred CceEEEEECCHHHHHHHHHHHHHhCCCcCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999988887 68999999999999999999888774
No 94
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.68 E-value=9.7e-05 Score=67.48 Aligned_cols=95 Identities=9% Similarity=0.092 Sum_probs=71.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+++|||+|..+.. |+.++....+ ++=+-|+++++++++++++..++. ++.... .++.++.+.+ .|+|+-+||
T Consensus 130 ~~l~iiGaG~QA~~-~l~a~~~vr~-i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~-~~~~~~av~~--ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEF-QALAFKALLG-IEEIRLYDIDPAATAKLARNLAGP--GLRIVA-CRSVAEAVEG--ADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHH-HHHHHHHhCC-ceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE-eCCHHHHHhc--CCEEEEecC
Confidence 47999999999985 8888886655 677789999999999999866543 322221 2789999987 899999998
Q ss_pred CcccHHHH-HHHHHcCCeEEEec
Q 018445 83 GQAQVDTS-LKLLKAGKHVIQEK 104 (355)
Q Consensus 83 ~~~H~~~~-~~al~~GkhVl~EK 104 (355)
.....+++ .+.++.|.||..=-
T Consensus 203 S~~~~Pvl~~~~lkpG~hV~aIG 225 (346)
T PRK07589 203 DKTNATILTDDMVEPGMHINAVG 225 (346)
T ss_pred CCCCCceecHHHcCCCcEEEecC
Confidence 65433434 35789999998743
No 95
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.67 E-value=3.6e-05 Score=69.74 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=66.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+++|||+|..+.. |+..+...-+ ++=+-|++|+++++++++++.++. ++.... .+|.++.+.+ .|+|+-+||.
T Consensus 130 ~l~viGaG~QA~~-~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~~--~~~v~~-~~~~~~av~~--aDii~taT~s 202 (313)
T PF02423_consen 130 TLGVIGAGVQARW-HLRALAAVRP-IKEVRVYSRSPERAEAFAARLRDL--GVPVVA-VDSAEEAVRG--ADIIVTATPS 202 (313)
T ss_dssp EEEEE--SHHHHH-HHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHCC--CTCEEE-ESSHHHHHTT--SSEEEE----
T ss_pred eEEEECCCHHHHH-HHHHHHHhCC-ceEEEEEccChhHHHHHHHhhccc--ccccee-ccchhhhccc--CCEEEEccCC
Confidence 7899999999985 8999987665 788899999999999999977663 443322 2789999997 7899999988
Q ss_pred cccHHHH-HHHHHcCCeEEEecCCCCCHHH
Q 018445 84 QAQVDTS-LKLLKAGKHVIQEKPAAANISE 112 (355)
Q Consensus 84 ~~H~~~~-~~al~~GkhVl~EKP~a~~~~e 112 (355)
....+++ ...++.|.||..=-.-..+..|
T Consensus 203 ~~~~P~~~~~~l~~g~hi~~iGs~~~~~~E 232 (313)
T PF02423_consen 203 TTPAPVFDAEWLKPGTHINAIGSYTPGMRE 232 (313)
T ss_dssp SSEEESB-GGGS-TT-EEEE-S-SSTTBES
T ss_pred CCCCccccHHHcCCCcEEEEecCCCCchhh
Confidence 7742222 3568889998875443333333
No 96
>PLN02256 arogenate dehydrogenase
Probab=97.66 E-value=0.00011 Score=66.03 Aligned_cols=77 Identities=17% Similarity=0.090 Sum_probs=54.0
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
.+||+|||+|.||.. +...+.+.+ .+|+ ++|+++.. ..+. +. ++. . +++.++++. .+.|+|++|+
T Consensus 36 ~~kI~IIG~G~mG~s-lA~~L~~~G--~~V~-~~d~~~~~--~~a~---~~--gv~-~--~~~~~e~~~-~~aDvVilav 100 (304)
T PLN02256 36 KLKIGIVGFGNFGQF-LAKTFVKQG--HTVL-ATSRSDYS--DIAA---EL--GVS-F--FRDPDDFCE-EHPDVVLLCT 100 (304)
T ss_pred CCEEEEEeeCHHHHH-HHHHHHhCC--CEEE-EEECccHH--HHHH---Hc--CCe-e--eCCHHHHhh-CCCCEEEEec
Confidence 469999999999985 788887654 5776 45666532 2222 22 332 2 278888875 3489999999
Q ss_pred CCcccHHHHHHH
Q 018445 82 AGQAQVDTSLKL 93 (355)
Q Consensus 82 p~~~H~~~~~~a 93 (355)
|+....+++.+.
T Consensus 101 p~~~~~~vl~~l 112 (304)
T PLN02256 101 SILSTEAVLRSL 112 (304)
T ss_pred CHHHHHHHHHhh
Confidence 998877777664
No 97
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.64 E-value=0.0001 Score=68.35 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=69.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcc-ccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVE-CVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-+++|||+|..+.. |+..+...-+.++=+-|++++++++++++++....++++. ... .+|.++.+.+ .|+|+-+|
T Consensus 156 ~~l~iiG~G~QA~~-~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~-~~s~~eav~~--ADIVvtaT 231 (379)
T PRK06199 156 KVVGLLGPGVMGKT-ILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV-VDSIEEVVRG--SDIVTYCN 231 (379)
T ss_pred CEEEEECCcHHHHH-HHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE-eCCHHHHHcC--CCEEEEcc
Confidence 37999999999985 8988886432277789999999999999987655544321 111 2889999987 88899888
Q ss_pred CCcc----cHHHH-HHHHHcCCeEEE
Q 018445 82 AGQA----QVDTS-LKLLKAGKHVIQ 102 (355)
Q Consensus 82 p~~~----H~~~~-~~al~~GkhVl~ 102 (355)
+... -.+++ .+.++.|.||.+
T Consensus 232 ~s~~~~~s~~Pv~~~~~lkpG~hv~~ 257 (379)
T PRK06199 232 SGETGDPSTYPYVKREWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCCcCcEecHHHcCCCcEEec
Confidence 7432 11222 456789999985
No 98
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.63 E-value=0.00012 Score=65.78 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=70.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc-CCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF-ADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-++||||+|..+.. |+..+....+ ++=+-|++++++++++++++.++.+ ..+... ++.++.+.+ .|+|+-+|
T Consensus 118 ~~l~iiGaG~QA~~-~~~a~~~v~~-i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~---~~~~eav~~--aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAET-QLEGMASVYN-PKRIRVYSRNFDHARAFAERFSKEFGVDIRPV---DNAEAALRD--ADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHH-HHHHHHhcCC-CCEEEEECCCHHHHHHHHHHHHHhcCCcEEEe---CCHHHHHhc--CCEEEEec
Confidence 37999999999985 8988887766 7778999999999999998765432 122222 789999987 89999888
Q ss_pred CCcccHHHHHHHHHcCCeEEEe
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~E 103 (355)
+... .-+-.+.++.|.||..=
T Consensus 191 ~s~~-P~~~~~~l~pg~hV~ai 211 (301)
T PRK06407 191 NSDT-PIFNRKYLGDEYHVNLA 211 (301)
T ss_pred CCCC-cEecHHHcCCCceEEec
Confidence 8653 22335568889998873
No 99
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.63 E-value=0.00016 Score=68.38 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=51.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH------------hhh-cCC-ccccccCcchhhh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA------------RKH-FAD-VECVWGDNGLEQI 68 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~------------~~~-~~~-~~~~~~~~~~~el 68 (355)
|||||||+|.+|.. ....|.+.+ .+|+ ++|+++++.+.+.+-. .+. ..+ +. . +++++++
T Consensus 1 mkI~vIGlG~~G~~-lA~~La~~G--~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~-~--~~~~~~~ 73 (411)
T TIGR03026 1 MKIAVIGLGYVGLP-LAALLADLG--HEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLR-A--TTDYEDA 73 (411)
T ss_pred CEEEEECCCchhHH-HHHHHHhcC--CeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeE-E--ECCHHHH
Confidence 48999999999986 677777654 4664 5699999988765300 000 001 11 1 2678887
Q ss_pred hcCCCccEEEEecCCccc
Q 018445 69 IKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H 86 (355)
+++ .|+|+||+|+..+
T Consensus 74 ~~~--advvii~vpt~~~ 89 (411)
T TIGR03026 74 IRD--ADVIIICVPTPLK 89 (411)
T ss_pred Hhh--CCEEEEEeCCCCC
Confidence 765 8999999998865
No 100
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.63 E-value=0.0027 Score=57.95 Aligned_cols=206 Identities=11% Similarity=0.124 Sum_probs=130.7
Q ss_pred Ee-cccccchhccchhhhcCCeEEEEEEEe-CCHHHHHHHHHHHhhhcCC---------------------ccccccCcc
Q 018445 8 LG-AGIFVKTQYIPRLAEISDLVSLKFIWS-RSEESAKSAAEVARKHFAD---------------------VECVWGDNG 64 (355)
Q Consensus 8 iG-~G~~~~~~~~~~l~~~~~~~~vvai~d-~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 64 (355)
+| +|+||+. -+..+++++++++|+++.. .+.+.+.+.++ ++.|. ....++.+.
T Consensus 2 LGsTGSIG~q-tLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~---~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~ 77 (383)
T PRK12464 2 LGSTGSIGTS-ALDVVSAHPEHFKVVGLTANYNIELLEQQIK---RFQPRIVSVADKELADTLRTRLSANTSKITYGTDG 77 (383)
T ss_pred CccccHHHHH-HHHHHHhCccccEEEEEECCCCHHHHHHHHH---HhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHH
Confidence 44 6889986 7888888888899999766 34444444333 33222 122233356
Q ss_pred hhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHH-HHHhhccCCCCCCCCeEEEEecccCch
Q 018445 65 LEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENA-LSRYNSICPDPPGQPIWAVAENYRFEP 143 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~~~~~~v~~~~r~~p 143 (355)
+.+|.+.+++|.|+.+..-..-...+.+|+++||.|.+-- =.++--+-.+ .+++++. +..+.. -+.
T Consensus 78 l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLAN--KESLV~aG~li~~~~~~~------~~~iiP-----VDS 144 (383)
T PRK12464 78 LIAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALAN--KETLVAAGHIVTDLAKQN------GCRLIP-----VDS 144 (383)
T ss_pred HHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEec--hhhHhhhHHHHHHHHHHc------CCeEEe-----ech
Confidence 7788888889999999999999999999999999876642 1333333334 4677773 544332 245
Q ss_pred HHHHHHHHHHH--hCCeeEEEEEEeec-cCCCCC-----------ccCcccccc----ccCccccchhhHHHHHHHHHhC
Q 018445 144 AFVECKKLIAE--IGDMMSVQVIVEGS-MNSSNP-----------YFSSSWRRN----FTGGFILDMGVHFIAGLRMITG 205 (355)
Q Consensus 144 ~~~~~k~~i~~--iG~i~~v~~~~~~~-~~~~~~-----------~~~~~w~~~----~~gg~l~d~g~H~id~~~~l~G 205 (355)
-.-.+.+.++. ..+|..+..+-++. +..... -..++|.=. .+.-.|++-|.--|... |||+
T Consensus 145 EHsAIfQ~L~~~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~-~LF~ 223 (383)
T PRK12464 145 EHSAIFQCLNGENNKEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAH-WLFD 223 (383)
T ss_pred hHHHHHHHccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHH-HHcC
Confidence 55556666652 23366666654432 221110 013567521 23346666666777765 9999
Q ss_pred CcceeEEEeecccCCCCCCCceEEEEEEecCCc
Q 018445 206 CEVVSVSAITSHIDKTLPPPDNISSNFQLENGC 238 (355)
Q Consensus 206 ~~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~ 238 (355)
-+++++....+ .....+.+++|.||.
T Consensus 224 i~~d~I~vvIH-------PqSiVHsmVef~DGS 249 (383)
T PRK12464 224 IPYEKIDVLIH-------KESIIHSLVEFIDGS 249 (383)
T ss_pred CCHHHeEEEEC-------CCCceeEEEEEcCcc
Confidence 87888888763 345788999999995
No 101
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00019 Score=64.09 Aligned_cols=94 Identities=26% Similarity=0.304 Sum_probs=64.1
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccc----ccCcchhhhhcCCCccE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECV----WGDNGLEQIIKEDSILG 76 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ell~~~~~D~ 76 (355)
|++||+|||.-+.+..-.++.|..+|+ +++..+..+. ...+.+. +.+|+.... +..-+.+++ ...++|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~-ve~~~~ss~~-~~g~~~~----~~~p~l~g~~~l~~~~~~~~~~-~~~~~Dv 73 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD-VELILISSRE-RAGKPVS----DVHPNLRGLVDLPFQTIDPEKI-ELDECDV 73 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC-eEEEEeechh-hcCCchH----HhCcccccccccccccCChhhh-hcccCCE
Confidence 789999999655443337888888987 8965554433 3333333 355555422 111234555 4456999
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEE
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl 101 (355)
|+.|+|+..-.+++-..++.|+.|+
T Consensus 74 vFlalPhg~s~~~v~~l~~~g~~VI 98 (349)
T COG0002 74 VFLALPHGVSAELVPELLEAGCKVI 98 (349)
T ss_pred EEEecCchhHHHHHHHHHhCCCeEE
Confidence 9999999999999999999998754
No 102
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00015 Score=65.63 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=70.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+++|||+|..+.. |+..+....+ ++=+-|++++++++++++++.++....+.. .++.++.+.+ .|+|+-+|+
T Consensus 129 ~~l~iiG~G~qA~~-~~~a~~~v~~-i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~---~~~~~~av~~--ADIV~taT~ 201 (315)
T PRK06823 129 SAIGIVGTGIQARM-QLMYLKNVTD-CRQLWVWGRSETALEEYRQYAQALGFAVNT---TLDAAEVAHA--ANLIVTTTP 201 (315)
T ss_pred CEEEEECCcHHHHH-HHHHHHhcCC-CCEEEEECCCHHHHHHHHHHHHhcCCcEEE---ECCHHHHhcC--CCEEEEecC
Confidence 37999999999985 8988887665 677899999999999998866443222221 2789999976 899998887
Q ss_pred CcccHHHH-HHHHHcCCeEEEe
Q 018445 83 GQAQVDTS-LKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~-~~al~~GkhVl~E 103 (355)
... +++ -+.++.|-||..=
T Consensus 202 s~~--P~~~~~~l~~G~hi~~i 221 (315)
T PRK06823 202 SRE--PLLQAEDIQPGTHITAV 221 (315)
T ss_pred CCC--ceeCHHHcCCCcEEEec
Confidence 553 333 4578899998854
No 103
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.60 E-value=0.00022 Score=65.25 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=65.7
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh--hhcCCcc--c-cccCcchhhhhcCCCccE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR--KHFADVE--C-VWGDNGLEQIIKEDSILG 76 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~ell~~~~~D~ 76 (355)
.|||+|||+|.||.. ....|.+.+ .+| -++++++++.+.+.+... .+.++.. . ...++++++.+++ .|+
T Consensus 4 ~m~I~iIG~G~mG~~-ia~~L~~~G--~~V-~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~ 77 (328)
T PRK14618 4 GMRVAVLGAGAWGTA-LAVLAASKG--VPV-RLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADF 77 (328)
T ss_pred CCeEEEECcCHHHHH-HHHHHHHCC--CeE-EEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCE
Confidence 369999999999985 777777654 454 578999998887765210 1111210 0 1112678887764 899
Q ss_pred EEEecCCcccHHHHHHHHHcCC-eEEEecCCCCC
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGK-HVIQEKPAAAN 109 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~Gk-hVl~EKP~a~~ 109 (355)
|++++|+....+++ +.++.+. -|.+-|.+...
T Consensus 78 Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~ 110 (328)
T PRK14618 78 AVVAVPSKALRETL-AGLPRALGYVSCAKGLAPD 110 (328)
T ss_pred EEEECchHHHHHHH-HhcCcCCEEEEEeeccccC
Confidence 99999999765544 4455564 45588876544
No 104
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.60 E-value=0.00022 Score=64.68 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=64.5
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
..||+|||+|.+|.. ++..+...+ ..-+.++++++++++.+++ ++ +.. ...++++++.+.+ .|+|+.+|
T Consensus 178 ~~~V~ViGaG~iG~~-~a~~L~~~g--~~~V~v~~r~~~ra~~la~---~~--g~~-~~~~~~~~~~l~~--aDvVi~at 246 (311)
T cd05213 178 GKKVLVIGAGEMGEL-AAKHLAAKG--VAEITIANRTYERAEELAK---EL--GGN-AVPLDELLELLNE--ADVVISAT 246 (311)
T ss_pred CCEEEEECcHHHHHH-HHHHHHHcC--CCEEEEEeCCHHHHHHHHH---Hc--CCe-EEeHHHHHHHHhc--CCEEEECC
Confidence 368999999999985 777777633 4556888999999988877 33 221 1111455666654 89999999
Q ss_pred CCcccHHHHHHHHHc---CCeEEEecCC
Q 018445 82 AGQAQVDTSLKLLKA---GKHVIQEKPA 106 (355)
Q Consensus 82 p~~~H~~~~~~al~~---GkhVl~EKP~ 106 (355)
+.....++...+++. +..++++=.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 988775666665544 2456766543
No 105
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.58 E-value=0.00041 Score=65.44 Aligned_cols=72 Identities=10% Similarity=0.179 Sum_probs=49.0
Q ss_pred CC-ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhc---------
Q 018445 1 MA-PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIK--------- 70 (355)
Q Consensus 1 m~-~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~--------- 70 (355)
|. +||+|||+|.+|.. ....|.+.+ .+|+ .+|+++++.+.+.. .. ++ .+ ..++++++.
T Consensus 1 m~~~kI~VIGlG~~G~~-~A~~La~~G--~~V~-~~D~~~~~v~~l~~---g~---~~-~~-e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 1 MSFETISVIGLGYIGLP-TAAAFASRQ--KQVI-GVDINQHAVDTINR---GE---IH-IV-EPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred CCccEEEEECcchhhHH-HHHHHHhCC--CEEE-EEeCCHHHHHHHHC---CC---CC-cC-CCCHHHHHHHHhhcCcee
Confidence 66 59999999999986 677777654 5664 56999999887543 11 11 11 144555532
Q ss_pred ----CCCccEEEEecCCc
Q 018445 71 ----EDSILGVAVVLAGQ 84 (355)
Q Consensus 71 ----~~~~D~V~I~tp~~ 84 (355)
..+.|+|+||+|+.
T Consensus 69 ~~~~~~~aDvvii~vptp 86 (415)
T PRK11064 69 ATTTPEPADAFLIAVPTP 86 (415)
T ss_pred eecccccCCEEEEEcCCC
Confidence 12589999999985
No 106
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.56 E-value=0.0017 Score=58.21 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCc-eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhh----hc---------------CCccccc
Q 018445 1 MAP-RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARK----HF---------------ADVECVW 60 (355)
Q Consensus 1 m~~-rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~----~~---------------~~~~~~~ 60 (355)
|++ ||+|||+|.||.. ....+...+ .+ |-++|++++..+.+.+..++ +. ..+.
T Consensus 1 ~~~~kIaViGaG~mG~~-iA~~la~~G--~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--- 73 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQ-IAFQTAFHG--FD-VTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT--- 73 (287)
T ss_pred CCccEEEEECCCHHHHH-HHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE---
Confidence 554 8999999999986 555565544 45 46779999887766543211 10 0111
Q ss_pred cCcchhhhhcCCCccEEEEecCCcc--cHHHHHHHHHcC--CeEEEecCCCCCHHH
Q 018445 61 GDNGLEQIIKEDSILGVAVVLAGQA--QVDTSLKLLKAG--KHVIQEKPAAANISE 112 (355)
Q Consensus 61 ~~~~~~ell~~~~~D~V~I~tp~~~--H~~~~~~al~~G--khVl~EKP~a~~~~e 112 (355)
.++|+++.+++ .|+|+.+.|... ..++..+..+.- ..+++--.-+.++.+
T Consensus 74 ~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 74 LTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred EeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 12788888776 899999999773 444444433322 235544433444443
No 107
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00018 Score=64.95 Aligned_cols=91 Identities=24% Similarity=0.303 Sum_probs=72.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCC-ccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFAD-VECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+||||+|..+.. |+.++...-+ ++=+-|++++++.++++++.+++.++. +... +|.++.++. .|+|+-+||
T Consensus 132 ~laiIGaG~qA~~-ql~a~~~v~~-~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~---~s~~~av~~--aDiIvt~T~ 204 (330)
T COG2423 132 TLAIIGAGAQART-QLEALKAVRD-IREIRVYSRDPEAAEAFAARLRKRGGEAVGAA---DSAEEAVEG--ADIVVTATP 204 (330)
T ss_pred EEEEECCcHHHHH-HHHHHHhhCC-ccEEEEEcCCHHHHHHHHHHHHhhcCccceec---cCHHHHhhc--CCEEEEecC
Confidence 5899999999975 9999998766 677789999999999999877666543 3332 889999997 799999999
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018445 83 GQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~ 102 (355)
... .-+-..-|+.|-||-.
T Consensus 205 s~~-Pil~~~~l~~G~hI~a 223 (330)
T COG2423 205 STE-PVLKAEWLKPGTHINA 223 (330)
T ss_pred CCC-CeecHhhcCCCcEEEe
Confidence 887 4444566778888764
No 108
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.54 E-value=0.00017 Score=56.80 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=63.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
|+.|||+|.+++. .+..|...+ ++=+.++.|+.++++.+++.+... .+.. ..++++.+.+.. .|+|+.+||.
T Consensus 14 ~vlviGaGg~ar~-v~~~L~~~g--~~~i~i~nRt~~ra~~l~~~~~~~--~~~~-~~~~~~~~~~~~--~DivI~aT~~ 85 (135)
T PF01488_consen 14 RVLVIGAGGAARA-VAAALAALG--AKEITIVNRTPERAEALAEEFGGV--NIEA-IPLEDLEEALQE--ADIVINATPS 85 (135)
T ss_dssp EEEEESSSHHHHH-HHHHHHHTT--SSEEEEEESSHHHHHHHHHHHTGC--SEEE-EEGGGHCHHHHT--ESEEEE-SST
T ss_pred EEEEECCHHHHHH-HHHHHHHcC--CCEEEEEECCHHHHHHHHHHcCcc--ccce-eeHHHHHHHHhh--CCeEEEecCC
Confidence 8999999999985 788888764 555588999999999998844111 1211 112556656665 8999999997
Q ss_pred cccHHHHHHHHHcCC---eEEEec
Q 018445 84 QAQVDTSLKLLKAGK---HVIQEK 104 (355)
Q Consensus 84 ~~H~~~~~~al~~Gk---hVl~EK 104 (355)
..+ .+....++... .++++=
T Consensus 86 ~~~-~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 86 GMP-IITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp TST-SSTHHHHTTTCHHCSEEEES
T ss_pred CCc-ccCHHHHHHHHhhhhceecc
Confidence 766 55555566664 477775
No 109
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0035 Score=53.18 Aligned_cols=152 Identities=12% Similarity=0.135 Sum_probs=105.0
Q ss_pred ceEEEEecccccchhccchhhhc-------CCeEEEEEEEeCC---------HHHH-HHHHHHHhhhcCCccccccCcch
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEI-------SDLVSLKFIWSRS---------EESA-KSAAEVARKHFADVECVWGDNGL 65 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-------~~~~~vvai~d~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 65 (355)
++|+++|||.+|+. ++..+... .-.++|+++||-. ++.. ..+.. +...+-...+ ++
T Consensus 4 vnVa~~G~G~vG~~-lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~---~L~~st~~al---sL 76 (364)
T KOG0455|consen 4 VNVALMGCGGVGRH-LLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKS---ELIKSTGSAL---SL 76 (364)
T ss_pred ccEEEEeccchHHH-HHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHH---HHHHhcCCcc---cH
Confidence 69999999999974 67666522 1238999999863 2222 11111 0111222222 35
Q ss_pred hhhhc----CCCccEEEEecCCcccHHHHHHHHHcCCeEEE--ecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecc
Q 018445 66 EQIIK----EDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQ--EKPAAANISEIENALSRYNSICPDPPGQPIWAVAENY 139 (355)
Q Consensus 66 ~ell~----~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~ 139 (355)
++|++ .+.+-+++-+|....-.+....+++.|+.+-. -||++.+++..+.|....+. ++.+..-+..-
T Consensus 77 daLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s------~~fi~HEatVG 150 (364)
T KOG0455|consen 77 DALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKS------PRFIRHEATVG 150 (364)
T ss_pred HHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCC------CceEEeecccc
Confidence 55544 57777888888888889999999999987765 58999999999998877664 45444455555
Q ss_pred cCchHHHHHHHHHHHhCCeeEEEEEEee
Q 018445 140 RFEPAFVECKKLIAEIGDMMSVQVIVEG 167 (355)
Q Consensus 140 r~~p~~~~~k~~i~~iG~i~~v~~~~~~ 167 (355)
--.|....++++|+.--+|..+...|.+
T Consensus 151 AGLPiIs~L~eiI~tGDev~kIeGifSG 178 (364)
T KOG0455|consen 151 AGLPIISSLNEIISTGDEVHKIEGIFSG 178 (364)
T ss_pred CCchhHHHHHHHHhcCCceeEEEEEeec
Confidence 6679999999999974457777777654
No 110
>PLN02712 arogenate dehydrogenase
Probab=97.50 E-value=0.00067 Score=67.65 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
+.+||||||+|.||.. +...|.+.+ .+|+ ++|++... +.+. +. ++. . +++++++++. +.|+|++|
T Consensus 368 ~~~kIgIIGlG~mG~s-lA~~L~~~G--~~V~-~~dr~~~~-~~a~----~~--Gv~-~--~~~~~el~~~-~aDvVILa 432 (667)
T PLN02712 368 SKLKIAIVGFGNFGQF-LAKTMVKQG--HTVL-AYSRSDYS-DEAQ----KL--GVS-Y--FSDADDLCEE-HPEVILLC 432 (667)
T ss_pred CCCEEEEEecCHHHHH-HHHHHHHCc--CEEE-EEECChHH-HHHH----Hc--CCe-E--eCCHHHHHhc-CCCEEEEC
Confidence 4689999999999985 888887654 5776 66877543 2222 22 332 2 2788998863 47999999
Q ss_pred cCCcccHHHHHHHH
Q 018445 81 LAGQAQVDTSLKLL 94 (355)
Q Consensus 81 tp~~~H~~~~~~al 94 (355)
+|+..-.+++.+..
T Consensus 433 vP~~~~~~vi~~l~ 446 (667)
T PLN02712 433 TSILSTEKVLKSLP 446 (667)
T ss_pred CChHHHHHHHHHHH
Confidence 99977777666543
No 111
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.50 E-value=0.00072 Score=63.88 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=56.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--C--------CccccccCcchhhhhcC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--A--------DVECVWGDNGLEQIIKE 71 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~ell~~ 71 (355)
+|||||||+|.+|.. ....+.+ + .+|++ +|+++++.+.+.+ ....+ | +.-.+ +++.+ .+++
T Consensus 6 ~mkI~vIGlGyvGlp-mA~~la~--~-~~V~g-~D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~--t~~~~-~~~~ 76 (425)
T PRK15182 6 EVKIAIIGLGYVGLP-LAVEFGK--S-RQVVG-FDVNKKRILELKN-GVDVNLETTEEELREARYLKF--TSEIE-KIKE 76 (425)
T ss_pred CCeEEEECcCcchHH-HHHHHhc--C-CEEEE-EeCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeE--EeCHH-HHcC
Confidence 589999999999986 5555654 3 67755 6999999998873 10000 0 00011 13444 4554
Q ss_pred CCccEEEEecCCcccH------HHHH-------HHHHcCCeEEEec
Q 018445 72 DSILGVAVVLAGQAQV------DTSL-------KLLKAGKHVIQEK 104 (355)
Q Consensus 72 ~~~D~V~I~tp~~~H~------~~~~-------~al~~GkhVl~EK 104 (355)
.|+++||.|+..+. +.+. +.++.|.-|..|.
T Consensus 77 --advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 77 --CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred --CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence 89999998887443 3333 2334466666666
No 112
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.47 E-value=0.00031 Score=62.02 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=60.3
Q ss_pred CC-ceEEEEecccccchhccchhhhcC--CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEE
Q 018445 1 MA-PRIAILGAGIFVKTQYIPRLAEIS--DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 1 m~-~rigiiG~G~~~~~~~~~~l~~~~--~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V 77 (355)
|. |||||||+|.||.. .+..|.+.+ ..-++ -++++++++. +... ..+.++++++ .|+|
T Consensus 1 ~~~mkI~iIG~G~mG~a-i~~~l~~~~~~~~~~i-~~~~~~~~~~------------~~~~---~~~~~~~~~~--~D~V 61 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSA-LAYGIENSNIIGKENI-YYHTPSKKNT------------PFVY---LQSNEELAKT--CDII 61 (260)
T ss_pred CCCCEEEEECccHHHHH-HHHHHHhCCCCCcceE-EEECCChhcC------------CeEE---eCChHHHHHh--CCEE
Confidence 44 89999999999985 788887543 11234 4567766441 1111 1566777764 7999
Q ss_pred EEecCCcccHHHHHHHHHc--CCeEEEecCCCCCHHHHHHHH
Q 018445 78 AVVLAGQAQVDTSLKLLKA--GKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~--GkhVl~EKP~a~~~~e~~~l~ 117 (355)
++|+|+..-.++....... ++.|++- =-+.+.+..+++.
T Consensus 62 ilavkp~~~~~vl~~i~~~l~~~~iIS~-~aGi~~~~l~~~~ 102 (260)
T PTZ00431 62 VLAVKPDLAGKVLLEIKPYLGSKLLISI-CGGLNLKTLEEMV 102 (260)
T ss_pred EEEeCHHHHHHHHHHHHhhccCCEEEEE-eCCccHHHHHHHc
Confidence 9999998877777765431 2333332 1244555555554
No 113
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.46 E-value=0.0013 Score=62.87 Aligned_cols=108 Identities=12% Similarity=0.251 Sum_probs=72.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCC--ccccccCcchhhhhcC-CCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFAD--VECVWGDNGLEQIIKE-DSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ell~~-~~~D~V~I~ 80 (355)
+|||||+|.||.. ...+|.+.+ ++| .++|+++++.+.+.+ ...++ +.. +++++++.+. ..+|+|+++
T Consensus 1 ~IG~IGLG~MG~~-mA~nL~~~G--~~V-~v~drt~~~~~~l~~---~~~~g~~~~~---~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSN-LALNMADHG--FTV-SVYNRTPEKTDEFLA---EHAKGKKIVG---AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHH-HHHHHHhcC--CeE-EEEeCCHHHHHHHHh---hccCCCCcee---cCCHHHHHhhcCCCCEEEEE
Confidence 5899999999986 788888765 565 678999999988876 21111 222 2678888864 458999999
Q ss_pred cCCcccHHHHHHHHHcC---CeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 81 LAGQAQVDTSLKLLKAG---KHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 81 tp~~~H~~~~~~al~~G---khVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
.|+....+-+...+... -+++++=- +....+..+..+..++
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~g-ns~~~~t~~~~~~l~~ 114 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGG-NSHYPDTERRYKELKA 114 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECC-CcCHHHHHHHHHHHHh
Confidence 99976655554433322 35777731 2345666666666655
No 114
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.43 E-value=0.00045 Score=61.71 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=58.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||+|||+|.||.. ....|.+.+ .+| .++|+++++.+.+.+. +..... .++. +.+. +.|+|++|+|
T Consensus 1 m~I~IIG~G~mG~s-la~~L~~~g--~~V-~~~d~~~~~~~~a~~~------g~~~~~-~~~~-~~~~--~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGS-LGLDLRSLG--HTV-YGVSRRESTCERAIER------GLVDEA-STDL-SLLK--DCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHH-HHHHHHHCC--CEE-EEEECCHHHHHHHHHC------CCcccc-cCCH-hHhc--CCCEEEEcCC
Confidence 48999999999986 777777654 455 5679999888776541 211111 1344 3444 4899999999
Q ss_pred CcccHHHHHHHHHc--CCeEEEe
Q 018445 83 GQAQVDTSLKLLKA--GKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~~~al~~--GkhVl~E 103 (355)
+..-.+++...... ...++++
T Consensus 67 ~~~~~~~~~~l~~~l~~~~ii~d 89 (279)
T PRK07417 67 IGLLLPPSEQLIPALPPEAIVTD 89 (279)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEe
Confidence 98887777665543 2334444
No 115
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.42 E-value=0.0011 Score=52.96 Aligned_cols=103 Identities=24% Similarity=0.239 Sum_probs=63.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeC-CHHHHHHHHHHHhhh--cCC-ccc-------------cccCcch
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR-SEESAKSAAEVARKH--FAD-VEC-------------VWGDNGL 65 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~-~~~~~~~~~~~~~~~--~~~-~~~-------------~~~~~~~ 65 (355)
|||||+|+|+||+. +++.+...++ ++|++++|+ +++....+.+.=.-+ ++. +.. .....++
T Consensus 1 ikv~I~G~GriGr~-v~~~~~~~~~-~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGFGRIGRL-VLRALLERPD-IEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECcCHHHHH-HHHHHHhCCC-CEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCCh
Confidence 69999999999985 8888876665 999999995 555554443200001 111 000 0000123
Q ss_pred hhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCC
Q 018445 66 EQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAA 107 (355)
Q Consensus 66 ~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a 107 (355)
+++- .+.++|+|+=||.-....+-+..=+++| |.|++==|..
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~ 122 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK 122 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCC
Confidence 3331 2345788888877766666666667778 8888877743
No 116
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.42 E-value=0.00043 Score=63.24 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=53.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh--hhcC------CccccccCcchhhhhcCCCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR--KHFA------DVECVWGDNGLEQIIKEDSI 74 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~ell~~~~~ 74 (355)
|||+|||+|.+|.. ....|.+.+ .+| .+++++++..+.+.+... .+.+ ++. . .++.++.+++ .
T Consensus 2 mkI~iiG~G~mG~~-~a~~L~~~g--~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--~ 72 (325)
T PRK00094 2 MKIAVLGAGSWGTA-LAIVLARNG--HDV-TLWARDPEQAAEINADRENPRYLPGIKLPDNLR-A--TTDLAEALAD--A 72 (325)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CEE-EEEECCHHHHHHHHHcCcccccCCCCcCCCCeE-E--eCCHHHHHhC--C
Confidence 59999999999985 777777654 454 788999988887765210 0001 121 1 2677777765 7
Q ss_pred cEEEEecCCcccHHHHH
Q 018445 75 LGVAVVLAGQAQVDTSL 91 (355)
Q Consensus 75 D~V~I~tp~~~H~~~~~ 91 (355)
|+|++++|+..-.+++.
T Consensus 73 D~vi~~v~~~~~~~v~~ 89 (325)
T PRK00094 73 DLILVAVPSQALREVLK 89 (325)
T ss_pred CEEEEeCCHHHHHHHHH
Confidence 99999999964334433
No 117
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.40 E-value=0.0011 Score=58.24 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=88.4
Q ss_pred CCceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCC---Ccc-
Q 018445 1 MAPRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKED---SIL- 75 (355)
Q Consensus 1 m~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~---~~D- 75 (355)
|++||.|.|+ |+||+. .+.++.+ ++ ++||+..|+.++-.....+.. .. +++. +.-+|++++|..- .+|
T Consensus 10 ~~i~V~V~Ga~G~MG~~-~~~av~~-~~-~~Lv~~~~~~~~~~~~~~~~~-g~--~v~~-~~~~dl~~~l~~~~~~~~~~ 82 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHA-VAEAAVS-AG-LQLVPVSFTGPAGVGVTVEVC-GV--EVRL-VGPSEREAVLSSVKAEYPNL 82 (286)
T ss_pred CCCeEEEECCCChHHHH-HHHHHhc-CC-CEEEEEeccccccccccceec-cc--eeee-ecCccHHHHHHHhhccCCCE
Confidence 5789999995 678875 7788777 65 999999998763322110100 00 2221 1117899999654 689
Q ss_pred EEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHH
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIA 153 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 153 (355)
+++-.|.|..=.+.+..|++.|+++.+=-. ..+.+ ++.+++++ +++.+.++.|+- -....+.++++
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTT-G~~~e---~l~~~~~~------~~i~vv~apNfS--iGv~ll~~l~~ 148 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTT-GGDRD---RLLKDVEE------SGVYAVIAPQMG--KQVVAFQAAME 148 (286)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECC-CCCHH---HHHHHHhc------CCccEEEECccc--HHHHHHHHHHH
Confidence 788899999999999999999999888654 23444 44455554 366676666654 44444444444
No 118
>PLN02858 fructose-bisphosphate aldolase
Probab=97.34 E-value=0.00092 Score=71.82 Aligned_cols=136 Identities=12% Similarity=0.106 Sum_probs=92.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-|||+||+|.||.. ...+|.+.+ .+| .+||+++++.+.+.+. +.... ++..|+.+. .|+|+++.|
T Consensus 5 ~~IGfIGLG~MG~~-mA~~L~~~G--~~v-~v~dr~~~~~~~l~~~------Ga~~~---~s~~e~a~~--advVi~~l~ 69 (1378)
T PLN02858 5 GVVGFVGLDSLSFE-LASSLLRSG--FKV-QAFEISTPLMEKFCEL------GGHRC---DSPAEAAKD--AAALVVVLS 69 (1378)
T ss_pred CeEEEEchhHHHHH-HHHHHHHCC--CeE-EEEcCCHHHHHHHHHc------CCeec---CCHHHHHhc--CCEEEEEcC
Confidence 48999999999985 778887754 566 5889999999988762 33322 789999986 799999999
Q ss_pred CcccHHHHH----HHHHcC--CeEEEecCCCCCHHHHHHHHHHhhccCCC---------------CCCCCeEEEEecccC
Q 018445 83 GQAQVDTSL----KLLKAG--KHVIQEKPAAANISEIENALSRYNSICPD---------------PPGQPIWAVAENYRF 141 (355)
Q Consensus 83 ~~~H~~~~~----~al~~G--khVl~EKP~a~~~~e~~~l~~~a~~~~~~---------------~~~~~~~~v~~~~r~ 141 (355)
+..+.+-+. .+++.- -.++++- -+.+++..+++.+.+++.|.. -...+.+|+|=.
T Consensus 70 ~~~~v~~V~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~--- 145 (1378)
T PLN02858 70 HPDQVDDVFFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGR--- 145 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCC---
Confidence 998766553 122221 2466664 278889999998888774300 001234444432
Q ss_pred chHHHHHHHHHHHhCC
Q 018445 142 EPAFVECKKLIAEIGD 157 (355)
Q Consensus 142 ~p~~~~~k~~i~~iG~ 157 (355)
...+.+++.+++.+|+
T Consensus 146 ~~~~~~~~p~l~~~g~ 161 (1378)
T PLN02858 146 SDAITRAQPFLSAMCQ 161 (1378)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 2346677777777775
No 119
>PLN02858 fructose-bisphosphate aldolase
Probab=97.34 E-value=0.0011 Score=71.19 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=91.4
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
..+||+||+|.||.. ....|.+.+ ++| .++|+++++.+.+.+ . +.... ++.+++++. .|+|++|.
T Consensus 324 ~~~IGfIGlG~MG~~-mA~~L~~~G--~~V-~v~dr~~~~~~~l~~----~--Ga~~~---~s~~e~~~~--aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFG-MASHLLKSN--FSV-CGYDVYKPTLVRFEN----A--GGLAG---NSPAEVAKD--VDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHH-HHHHHHHCC--CEE-EEEeCCHHHHHHHHH----c--CCeec---CCHHHHHhc--CCEEEEec
Confidence 468999999999985 778887654 566 578999999888765 1 22222 788999886 79999999
Q ss_pred CCcccHHHHH-------HHHHcCCeEEEecCCCCCHHHHHHHHHHhhc--cCCC-------------CCCCCeEEEEecc
Q 018445 82 AGQAQVDTSL-------KLLKAGKHVIQEKPAAANISEIENALSRYNS--ICPD-------------PPGQPIWAVAENY 139 (355)
Q Consensus 82 p~~~H~~~~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~--~~~~-------------~~~~~~~~v~~~~ 139 (355)
|+....+-+. ..++.|+ ++++- -+.+++.++++.+.+++ .|-. ......+|+|=.
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~-STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~- 465 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGA-SIVLS-STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGT- 465 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCC-EEEEC-CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECC-
Confidence 9776544332 2233444 44543 37788899998887766 2100 002456666643
Q ss_pred cCchHHHHHHHHHHHhCC
Q 018445 140 RFEPAFVECKKLIAEIGD 157 (355)
Q Consensus 140 r~~p~~~~~k~~i~~iG~ 157 (355)
...+.+++.+++.+|+
T Consensus 466 --~~~~~~~~plL~~lg~ 481 (1378)
T PLN02858 466 --DEALKSAGSVLSALSE 481 (1378)
T ss_pred --HHHHHHHHHHHHHHhC
Confidence 2567778888777775
No 120
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.33 E-value=0.00054 Score=61.91 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=52.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.||||||+|.||.. ++..|...+ ++++...++++++.+.+.+ . ++.. .+.++++++ .|+|++++|
T Consensus 4 kkIgiIG~G~mG~A-iA~~L~~sG--~~Viv~~~~~~~~~~~a~~----~--Gv~~----~s~~ea~~~--ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIGYGSQGHA-QALNLRDSG--LNVIVGLRKGGASWKKATE----D--GFKV----GTVEEAIPQ--ADLIMNLLP 68 (314)
T ss_pred CEEEEEeEcHHHHH-HHHHHHHCC--CeEEEEECcChhhHHHHHH----C--CCEE----CCHHHHHhc--CCEEEEeCC
Confidence 58999999999985 888888754 5665556666555554433 2 4432 457777765 799999999
Q ss_pred CcccHHHHHH
Q 018445 83 GQAQVDTSLK 92 (355)
Q Consensus 83 ~~~H~~~~~~ 92 (355)
+..+...+.+
T Consensus 69 p~~~~~~v~~ 78 (314)
T TIGR00465 69 DEVQHEVYEA 78 (314)
T ss_pred cHhHHHHHHH
Confidence 9966665544
No 121
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.33 E-value=0.001 Score=57.06 Aligned_cols=98 Identities=26% Similarity=0.191 Sum_probs=63.2
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcC--Cc--cccccCcchhhhhcCCCccEE
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFA--DV--ECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~ell~~~~~D~V 77 (355)
|||+||| +|.||.. ....|.+.+ .+|+ ++++++++++.+.+....... ++ .... .+..+.+++ .|+|
T Consensus 1 MkI~IIGG~G~mG~a-la~~L~~~G--~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~--aDvV 72 (219)
T TIGR01915 1 MKIAVLGGTGDQGKG-LALRLAKAG--NKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKR--ADVV 72 (219)
T ss_pred CEEEEEcCCCHHHHH-HHHHHHhCC--CEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhc--CCEE
Confidence 5899997 9999985 777777654 3554 569999998877653211111 11 1111 355666665 7999
Q ss_pred EEecCCcccHHHHHHHHH--cCCe-EEEecCCCC
Q 018445 78 AVVLAGQAQVDTSLKLLK--AGKH-VIQEKPAAA 108 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~--~Gkh-Vl~EKP~a~ 108 (355)
++++|+....+++..... .++- |-|-+|+..
T Consensus 73 ilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 73 ILAVPWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred EEECCHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 999999998888765432 2332 335677654
No 122
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=97.32 E-value=0.00078 Score=53.83 Aligned_cols=105 Identities=21% Similarity=0.181 Sum_probs=69.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC--HHHHHHHHHHHhhh--cCC-cc-------------ccccCcc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS--EESAKSAAEVARKH--FAD-VE-------------CVWGDNG 64 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~--~~~~~~~~~~~~~~--~~~-~~-------------~~~~~~~ 64 (355)
|||||-|.|+||+. .++.+...++ ++|++|.|+. ++....+.+.-.-+ ++. +. ..+...+
T Consensus 1 ikVgINGfGRIGR~-v~r~~~~~~~-~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRL-VLRAALDQPD-IEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHH-HHHHHHTSTT-EEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHH-HHHhhcccce-EEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhh
Confidence 69999999999986 7888887666 9999999998 33333332200000 000 00 0000122
Q ss_pred hhhh-hcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCCCC
Q 018445 65 LEQI-IKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAAAN 109 (355)
Q Consensus 65 ~~el-l~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a~~ 109 (355)
++++ ..+.++|+|+=||+.....+-+..=+++| |-|++-=|....
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~ 125 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDD 125 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSS
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccc
Confidence 3333 12246899999999999999999999999 899998887654
No 123
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.30 E-value=0.00077 Score=60.97 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=51.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||||+|.+|.. +..+|...+ ++|+.. ++...+....+. +. ++.. .+.+++++. .|+|++++|
T Consensus 18 ktIgIIG~GsmG~A-lA~~L~~sG--~~Vvv~-~r~~~~s~~~A~---~~--G~~~----~s~~eaa~~--ADVVvLaVP 82 (330)
T PRK05479 18 KKVAIIGYGSQGHA-HALNLRDSG--VDVVVG-LREGSKSWKKAE---AD--GFEV----LTVAEAAKW--ADVIMILLP 82 (330)
T ss_pred CEEEEEeeHHHHHH-HHHHHHHCC--CEEEEE-ECCchhhHHHHH---HC--CCee----CCHHHHHhc--CCEEEEcCC
Confidence 48999999999985 888888754 576544 444333333222 22 3321 478898887 799999999
Q ss_pred CcccHHHH
Q 018445 83 GQAQVDTS 90 (355)
Q Consensus 83 ~~~H~~~~ 90 (355)
+..+..+.
T Consensus 83 d~~~~~V~ 90 (330)
T PRK05479 83 DEVQAEVY 90 (330)
T ss_pred HHHHHHHH
Confidence 99887777
No 124
>PLN02712 arogenate dehydrogenase
Probab=97.29 E-value=0.0017 Score=64.86 Aligned_cols=77 Identities=17% Similarity=0.087 Sum_probs=53.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
++||||||+|.||.. +...|.+.+ .+|++ +|++..+ +. +. +. ++.. ++++++++.. +.|+|++|+
T Consensus 52 ~~kIgIIG~G~mG~s-lA~~L~~~G--~~V~~-~dr~~~~-~~-A~---~~--Gv~~---~~d~~e~~~~-~aDvViLav 116 (667)
T PLN02712 52 QLKIAIIGFGNYGQF-LAKTLISQG--HTVLA-HSRSDHS-LA-AR---SL--GVSF---FLDPHDLCER-HPDVILLCT 116 (667)
T ss_pred CCEEEEEccCHHHHH-HHHHHHHCC--CEEEE-EeCCHHH-HH-HH---Hc--CCEE---eCCHHHHhhc-CCCEEEEcC
Confidence 479999999999985 888888764 57755 5776443 22 22 23 4432 2788887752 489999999
Q ss_pred CCcccHHHHHHH
Q 018445 82 AGQAQVDTSLKL 93 (355)
Q Consensus 82 p~~~H~~~~~~a 93 (355)
|+..-.+++...
T Consensus 117 P~~~~~~vl~~l 128 (667)
T PLN02712 117 SIISTENVLKSL 128 (667)
T ss_pred CHHHHHHHHHhh
Confidence 998666666553
No 125
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.27 E-value=0.00048 Score=61.86 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 1 MAPRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 1 m~~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|++|||||| +|..|.. .++.|.++|. +++++++...... . .+.+++++ ++|+|+.
T Consensus 1 ~~~~VaIvGAtGy~G~e-LlrlL~~hp~-~~l~~~~s~~~~~--------------~------~~~~~~~~--~~DvvFl 56 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQ-IRERLAGRSD-IELLSIPEAKRKD--------------A------AARRELLN--AADVAIL 56 (313)
T ss_pred CCcEEEEECCCCHHHHH-HHHHHhcCCC-eEEEEEecCCCCc--------------c------cCchhhhc--CCCEEEE
Confidence 899999999 5666765 8999999987 9999997654321 1 12234444 3899999
Q ss_pred ecCCcccHHHHHHHHHcCCeEE
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl 101 (355)
|+|+..-.+++.++.++|+.|+
T Consensus 57 alp~~~s~~~~~~~~~~g~~VI 78 (313)
T PRK11863 57 CLPDDAAREAVALIDNPATRVI 78 (313)
T ss_pred CCCHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999988654
No 126
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.21 E-value=0.0011 Score=59.11 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||.|||+|..|+. .+..|...+ +.=+.|++|+.++++.+++.....++.... ...+++.+.+.+ .|+|+.+||.
T Consensus 129 ~vlIlGaGGaara-ia~aL~~~G--~~~I~I~nR~~~ka~~la~~l~~~~~~~~~-~~~~~~~~~~~~--aDiVInaTp~ 202 (284)
T PRK12549 129 RVVQLGAGGAGAA-VAHALLTLG--VERLTIFDVDPARAAALADELNARFPAARA-TAGSDLAAALAA--ADGLVHATPT 202 (284)
T ss_pred EEEEECCcHHHHH-HHHHHHHcC--CCEEEEECCCHHHHHHHHHHHHhhCCCeEE-EeccchHhhhCC--CCEEEECCcC
Confidence 7999999999975 777777654 444688899999999998755333333221 111344444543 8999999997
Q ss_pred ccc
Q 018445 84 QAQ 86 (355)
Q Consensus 84 ~~H 86 (355)
..+
T Consensus 203 Gm~ 205 (284)
T PRK12549 203 GMA 205 (284)
T ss_pred CCC
Confidence 653
No 127
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.21 E-value=0.003 Score=60.02 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=59.7
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
|||+||| +|.||.. ....|.+.+ .+| -++++++++++..+. +. ++.. .++.++.+++ .|+|++|+
T Consensus 1 MkI~IIGG~G~mG~s-lA~~L~~~G--~~V-~v~~r~~~~~~~~a~---~~--gv~~---~~~~~e~~~~--aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKW-FARFLKEKG--FEV-IVTGRDPKKGKEVAK---EL--GVEY---ANDNIDAAKD--ADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHH-HHHHHHHCC--CEE-EEEECChHHHHHHHH---Hc--CCee---ccCHHHHhcc--CCEEEEec
Confidence 5899998 8999985 777777654 455 456899888765554 23 3321 2677888775 79999999
Q ss_pred CCcccHHHHHHHHHc--CCeEEEe
Q 018445 82 AGQAQVDTSLKLLKA--GKHVIQE 103 (355)
Q Consensus 82 p~~~H~~~~~~al~~--GkhVl~E 103 (355)
|...-.+++...... ...+++.
T Consensus 67 p~~~~~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 67 PINVTEDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 998766766665432 1235555
No 128
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0029 Score=57.54 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--C-------------CccccccCcch
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--A-------------DVECVWGDNGL 65 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~ 65 (355)
|.++|||||+|.+|-- ..-.+... + ++|+|+ |.++.+.+.+.+ .+.+. | .++. ++++
T Consensus 8 ~~~~I~ViGLGYVGLP-lA~~fA~~-G-~~ViG~-DIn~~~Vd~ln~-G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~ 79 (436)
T COG0677 8 MSATIGVIGLGYVGLP-LAAAFASA-G-FKVIGV-DINQKKVDKLNR-GESYIEEPDLDEVVKEAVESGKLRA---TTDP 79 (436)
T ss_pred CceEEEEEccccccHH-HHHHHHHc-C-CceEeE-eCCHHHHHHHhC-CcceeecCcHHHHHHHHHhcCCceE---ecCh
Confidence 5689999999999975 33333433 3 889887 999888776643 00010 0 1111 2566
Q ss_pred hhhhcCCCccEEEEecCCccc-------------HHHHHHHHHcCCeEEEec--CCCCCHHHHHHHHHH
Q 018445 66 EQIIKEDSILGVAVVLAGQAQ-------------VDTSLKLLKAGKHVIQEK--PAAANISEIENALSR 119 (355)
Q Consensus 66 ~ell~~~~~D~V~I~tp~~~H-------------~~~~~~al~~GkhVl~EK--P~a~~~~e~~~l~~~ 119 (355)
++|- +.|+++||.|+..- .+-+...|+.|-=|.+|- |..+|-+-++-|++.
T Consensus 80 ~~l~---~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 80 EELK---ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred hhcc---cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 6665 37889988777532 234455677788899997 556666666665554
No 129
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.18 E-value=0.0052 Score=55.12 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=51.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCc-----cc---------cccCcchhhh
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADV-----EC---------VWGDNGLEQI 68 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~-----~~---------~~~~~~~~el 68 (355)
||+|||+|.||.. ....+.+.+ .+| .++|+++++.+.+.+..... .++. .. .-.++++++.
T Consensus 3 ~V~VIG~G~mG~~-iA~~la~~G--~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRG-IAYVFAVSG--FQT-TLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred EEEEECccHHHHH-HHHHHHhCC--CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 7999999999986 566666544 455 46799999988865421111 0010 00 0012678888
Q ss_pred hcCCCccEEEEecCCcccH
Q 018445 69 IKEDSILGVAVVLAGQAQV 87 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H~ 87 (355)
+++ .|+|+.|+|.....
T Consensus 79 ~~~--aD~Vi~avpe~~~~ 95 (288)
T PRK09260 79 VAD--ADLVIEAVPEKLEL 95 (288)
T ss_pred hcC--CCEEEEeccCCHHH
Confidence 876 89999999998653
No 130
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.11 E-value=0.0067 Score=58.02 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=33.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHH
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAE 47 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~ 47 (355)
|||+|||+|.+|.. ..-.|...+.+++|+++ |.++++.+.+.+
T Consensus 2 m~I~ViG~GyvGl~-~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGP-TMAVIALKCPDIEVVVV-DISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHH-HHHHHHhcCCCCeEEEE-ECCHHHHHHHHc
Confidence 68999999999975 56666655434788776 999999888653
No 131
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.11 E-value=0.0016 Score=49.76 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=64.8
Q ss_pred eEEEEec----ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 4 RIAILGA----GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 4 rigiiG~----G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
+|+|||. +.+|.. .+..|.+.+ ++|..|-.. . +...+.. .| .+++|. -..+|+++|
T Consensus 2 siAVvGaS~~~~~~g~~-v~~~l~~~G--~~v~~Vnp~---~---------~~i~G~~-~y--~sl~e~--p~~iDlavv 61 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYR-VLRNLKAAG--YEVYPVNPK---G---------GEILGIK-CY--PSLAEI--PEPIDLAVV 61 (116)
T ss_dssp EEEEET--SSTTSHHHH-HHHHHHHTT---EEEEESTT---C---------SEETTEE--B--SSGGGC--SST-SEEEE
T ss_pred EEEEEcccCCCCChHHH-HHHHHHhCC--CEEEEECCC---c---------eEECcEE-ee--ccccCC--CCCCCEEEE
Confidence 6899995 455654 677777733 688777332 2 1112443 33 888883 456999999
Q ss_pred ecCCcccHHHHHHHHHcC-CeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEE
Q 018445 80 VLAGQAQVDTSLKLLKAG-KHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWA 134 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~G-khVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~ 134 (355)
++|+..-.+++.+|.+.| +.|++.-- ++..++.+.++++ |..+.
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~~g-----~~~~~~~~~a~~~------gi~vi 106 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQPG-----AESEELIEAAREA------GIRVI 106 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-TT-----S--HHHHHHHHHT------T-EEE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEEcc-----hHHHHHHHHHHHc------CCEEE
Confidence 999999999999999999 67777643 6778889999994 76653
No 132
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.11 E-value=0.0011 Score=52.96 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=54.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|||+|..|.. |..+|+..+ ++|+--...+....+.+.+ . +... .+++|+.+. .|+|++.+|+
T Consensus 6 ~IAViGyGsQG~a-~AlNLrDSG--~~V~Vglr~~s~s~~~A~~----~--Gf~v----~~~~eAv~~--aDvV~~L~PD 70 (165)
T PF07991_consen 6 TIAVIGYGSQGHA-HALNLRDSG--VNVIVGLREGSASWEKAKA----D--GFEV----MSVAEAVKK--ADVVMLLLPD 70 (165)
T ss_dssp EEEEES-SHHHHH-HHHHHHHCC---EEEEEE-TTCHHHHHHHH----T--T-EC----CEHHHHHHC---SEEEE-S-H
T ss_pred EEEEECCChHHHH-HHHHHHhCC--CCEEEEecCCCcCHHHHHH----C--CCee----ccHHHHHhh--CCEEEEeCCh
Confidence 8999999999975 888998865 5654322223323333332 2 4432 588999987 8999999999
Q ss_pred cccHHHH----HHHHHcCCeEEEecCC
Q 018445 84 QAQVDTS----LKLLKAGKHVIQEKPA 106 (355)
Q Consensus 84 ~~H~~~~----~~al~~GkhVl~EKP~ 106 (355)
..|.++. ..-|+.|+-+..--.+
T Consensus 71 ~~q~~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 71 EVQPEVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp HHHHHHHHHHHHHHS-TT-EEEESSSH
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCcc
Confidence 9998776 4456677766655444
No 133
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.10 E-value=0.0013 Score=58.81 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=49.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|||||+|.||.. +...|...+ ++|+.. ++.....+.+. .. +.. . .+++|+++. .|+|++++|+
T Consensus 18 tVGIIG~GsIG~a-mA~nL~d~G--~~ViV~-~r~~~s~~~A~----~~--G~~--v--~sl~Eaak~--ADVV~llLPd 81 (335)
T PRK13403 18 TVAVIGYGSQGHA-QAQNLRDSG--VEVVVG-VRPGKSFEVAK----AD--GFE--V--MSVSEAVRT--AQVVQMLLPD 81 (335)
T ss_pred EEEEEeEcHHHHH-HHHHHHHCc--CEEEEE-ECcchhhHHHH----Hc--CCE--E--CCHHHHHhc--CCEEEEeCCC
Confidence 7999999999986 888888765 777654 44333322222 12 332 1 589999997 7999999998
Q ss_pred cccHHHH
Q 018445 84 QAQVDTS 90 (355)
Q Consensus 84 ~~H~~~~ 90 (355)
..+..+.
T Consensus 82 ~~t~~V~ 88 (335)
T PRK13403 82 EQQAHVY 88 (335)
T ss_pred hHHHHHH
Confidence 6655444
No 134
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.0016 Score=59.63 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=63.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH--hhhcCCccc---cccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA--RKHFADVEC---VWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~ell~~~~~D~V 77 (355)
|||+|||+|.+|.. +...|.+.+ .+| .+++++++..+.+.+.. ..+.++... ...++++++.+. .+.|+|
T Consensus 1 MkI~IiGaGa~G~a-la~~L~~~g--~~V-~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~Dli 75 (326)
T PRK14620 1 MKISILGAGSFGTA-IAIALSSKK--ISV-NLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-DNATCI 75 (326)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCC--CeE-EEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-CCCCEE
Confidence 48999999999974 677777654 466 48899988887776521 011122110 001256666654 348999
Q ss_pred EEecCCcccHHHHHHHHH-c---CCe-EEEecCC
Q 018445 78 AVVLAGQAQVDTSLKLLK-A---GKH-VIQEKPA 106 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~-~---Gkh-Vl~EKP~ 106 (355)
+|++|+....+++..... . ... |.+-|=+
T Consensus 76 iiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 76 ILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 999999998888877654 2 222 4556655
No 135
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.08 E-value=0.00093 Score=61.61 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=61.2
Q ss_pred CCceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHH-HHHHHHHhhh-----cCC--ccccccCcchhhhhcC
Q 018445 1 MAPRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESA-KSAAEVARKH-----FAD--VECVWGDNGLEQIIKE 71 (355)
Q Consensus 1 m~~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~-~~~~~~~~~~-----~~~--~~~~~~~~~~~ell~~ 71 (355)
|++||+|+| +|.+|.. .++.|.+++. ++|+++. .++... +.+.... .+ .++ ....+...+.+++ .
T Consensus 2 ~~~~V~I~GatG~iG~~-l~~~L~~~p~-~el~~~~-~s~~~~G~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~- 75 (349)
T PRK08664 2 MKLKVGILGATGMVGQR-FVQLLANHPW-FEVTALA-ASERSAGKTYGEAV-RWQLDGPIPEEVADMEVVSTDPEAV-D- 75 (349)
T ss_pred CCcEEEEECCCCHHHHH-HHHHHHcCCC-ceEEEEE-cChhhcCCcccccc-cccccccccccccceEEEeCCHHHh-c-
Confidence 568999998 8999986 8888888876 8999982 232222 1121100 00 000 0001100234443 3
Q ss_pred CCccEEEEecCCcccHHHHHHHHHcCCeEEE
Q 018445 72 DSILGVAVVLAGQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 72 ~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~ 102 (355)
++|+|+.++|+..+.+++.++.++|+.|+.
T Consensus 76 -~~DvVf~a~p~~~s~~~~~~~~~~G~~vID 105 (349)
T PRK08664 76 -DVDIVFSALPSDVAGEVEEEFAKAGKPVFS 105 (349)
T ss_pred -CCCEEEEeCChhHHHHHHHHHHHCCCEEEE
Confidence 599999999999999999988899987654
No 136
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.07 E-value=0.0049 Score=55.90 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=63.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-----cCCc------------cccccCcchh
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-----FADV------------ECVWGDNGLE 66 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-----~~~~------------~~~~~~~~~~ 66 (355)
||+|||+|.||.. ....+.+.+ .+| -++|++++..+.+.+..... ..+. -.. .++++
T Consensus 4 ~V~VIG~G~mG~~-iA~~la~~G--~~V-~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~--~~~~~ 77 (308)
T PRK06129 4 SVAIIGAGLIGRA-WAIVFARAG--HEV-RLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV--TDSLA 77 (308)
T ss_pred EEEEECccHHHHH-HHHHHHHCC--Cee-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE--ECcHH
Confidence 8999999999985 666666654 465 47799998777644321100 0011 011 26888
Q ss_pred hhhcCCCccEEEEecCCccc--HHHHHHHHHc-CCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 67 QIIKEDSILGVAVVLAGQAQ--VDTSLKLLKA-GKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 67 ell~~~~~D~V~I~tp~~~H--~~~~~~al~~-GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
+.+++ .|+|+.++|.... ..+..++-+. ..++++- .+.+.....++.+.++.
T Consensus 78 ~a~~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~--ssts~~~~~~la~~~~~ 132 (308)
T PRK06129 78 DAVAD--ADYVQESAPENLELKRALFAELDALAPPHAILA--SSTSALLASAFTEHLAG 132 (308)
T ss_pred HhhCC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE--EeCCCCCHHHHHHhcCC
Confidence 88875 8999999998743 3333222111 2233332 33444455666666654
No 137
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.05 E-value=0.0029 Score=57.47 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=69.1
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeC--CHHHHHHHHHHHhhh--cCC-cc------------ccc-cC
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR--SEESAKSAAEVARKH--FAD-VE------------CVW-GD 62 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~--~~~~~~~~~~~~~~~--~~~-~~------------~~~-~~ 62 (355)
|++||||.|+|+||+. .++.+...++ ++|+++.|+ +.+.+..+.+.=.-+ +++ +. ... ..
T Consensus 1 m~ikigInG~GRiGr~-v~r~~~~~~~-~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~ 78 (334)
T PRK08955 1 MTIKVGINGFGRIGRL-ALRAAWDWPE-LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQN 78 (334)
T ss_pred CCeEEEEECcCHHHHH-HHHHHHhCCC-cEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEec
Confidence 8899999999999975 7777766555 999999985 444444433210001 111 10 000 00
Q ss_pred cchhhhhcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
.+++++-- .++|+|+-||......+.+..++++| |-|.+-=|
T Consensus 79 ~~~~~~~w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 79 KAIADTDW-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred CChhhCCc-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 24555433 37999999999999999999999999 66777666
No 138
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.00 E-value=0.0022 Score=57.39 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=74.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHH--HhhhcCCcccc---ccCcchhhhhcCCCccE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEV--ARKHFADVECV---WGDNGLEQIIKEDSILG 76 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~ell~~~~~D~ 76 (355)
.+||+|||.|.||.. ....+.+++. -|-+|.++++-.+.+.+. +.+|.|++..- ..++|+++.+++ .|.
T Consensus 1 ~~kI~ViGaGswGTA-LA~~la~ng~---~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~--ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTA-LAKVLARNGH---EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG--ADI 74 (329)
T ss_pred CceEEEEcCChHHHH-HHHHHHhcCC---eeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc--CCE
Confidence 369999999999985 6666777653 346789999998887763 44556654211 013789999997 899
Q ss_pred EEEecCCcccHHHHHHH---HHcC-CeEEEecCCCCC
Q 018445 77 VAVVLAGQAQVDTSLKL---LKAG-KHVIQEKPAAAN 109 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~a---l~~G-khVl~EKP~a~~ 109 (355)
|++++|.....+++... ++.+ +-|.|-|=+-..
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCC
Confidence 99999999999988874 2233 348888876553
No 139
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.99 E-value=0.0045 Score=57.38 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=51.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||+|||+|.||.. ....|.+.+..+. ++++++...+..... .. ++.... .+++++++++ .|+|++|+|+
T Consensus 2 ~I~iIG~GliG~s-iA~~L~~~G~~v~---i~~~~~~~~~~~~a~--~~--~~~~~~-~~~~~~~~~~--aDlVilavP~ 70 (359)
T PRK06545 2 TVLIVGLGLIGGS-LALAIKAAGPDVF---IIGYDPSAAQLARAL--GF--GVIDEL-AADLQRAAAE--ADLIVLAVPV 70 (359)
T ss_pred eEEEEEeCHHHHH-HHHHHHhcCCCeE---EEEeCCCHHHHHHHh--cC--CCCccc-ccCHHHHhcC--CCEEEEeCCH
Confidence 7999999999986 7888876653233 455555544333221 11 221111 2567777765 8999999999
Q ss_pred cccHHHHHHHH
Q 018445 84 QAQVDTSLKLL 94 (355)
Q Consensus 84 ~~H~~~~~~al 94 (355)
..-.+++.+..
T Consensus 71 ~~~~~vl~~l~ 81 (359)
T PRK06545 71 DATAALLAELA 81 (359)
T ss_pred HHHHHHHHHHh
Confidence 87666665544
No 140
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.98 E-value=0.018 Score=55.82 Aligned_cols=75 Identities=11% Similarity=0.198 Sum_probs=51.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh---hh---c-------CC-ccccccCcchhhh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR---KH---F-------AD-VECVWGDNGLEQI 68 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~---~~---~-------~~-~~~~~~~~~~~el 68 (355)
+||||||+|.||.. ....+.+.+ ++| .++|+++++.+.+.+... .. . .+ +. . .+|+++.
T Consensus 5 ~kIavIG~G~MG~~-iA~~la~~G--~~V-~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~-~--~~~~~ea 77 (495)
T PRK07531 5 MKAACIGGGVIGGG-WAARFLLAG--IDV-AVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT-F--CASLAEA 77 (495)
T ss_pred CEEEEECcCHHHHH-HHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE-e--eCCHHHH
Confidence 48999999999986 666666554 566 578999998876543110 00 0 01 21 1 2788888
Q ss_pred hcCCCccEEEEecCCccc
Q 018445 69 IKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H 86 (355)
+++ .|+|+.++|+...
T Consensus 78 ~~~--aD~Vieavpe~~~ 93 (495)
T PRK07531 78 VAG--ADWIQESVPERLD 93 (495)
T ss_pred hcC--CCEEEEcCcCCHH
Confidence 876 8999999999964
No 141
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0038 Score=55.64 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=75.4
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEe-CCHHHHHHHHHHHhhh--cCC---------------ccccccCc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWS-RSEESAKSAAEVARKH--FAD---------------VECVWGDN 63 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d-~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~ 63 (355)
++||||=|.|+||+. .++++...+++++||||-| .+++....+...=.-+ |++ ++. . .
T Consensus 1 ~ikV~INGfGrIGR~-v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v-~--~ 76 (335)
T COG0057 1 MIKVAINGFGRIGRL-VARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKV-L--A 76 (335)
T ss_pred CcEEEEecCcHHHHH-HHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEE-E--e
Confidence 479999999999986 8888887763499999999 7777776665421001 111 111 1 2
Q ss_pred chh-hhhcC--CCccEEEEecCCcccHHHHHHHHHcC--CeEEEecCCCCC
Q 018445 64 GLE-QIIKE--DSILGVAVVLAGQAQVDTSLKLLKAG--KHVIQEKPAAAN 109 (355)
Q Consensus 64 ~~~-ell~~--~~~D~V~I~tp~~~H~~~~~~al~~G--khVl~EKP~a~~ 109 (355)
+.+ ++|.. ..+|+|+=|||-....+-+.+-+++| |-|++-=|-..+
T Consensus 77 ~~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~ 127 (335)
T COG0057 77 ERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDD 127 (335)
T ss_pred cCChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCC
Confidence 333 55553 45899999999999999999889996 999998887654
No 142
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.98 E-value=0.0047 Score=57.71 Aligned_cols=74 Identities=8% Similarity=-0.037 Sum_probs=46.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhh-hcC---------CccccccCcchhhhhcCC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARK-HFA---------DVECVWGDNGLEQIIKED 72 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~ell~~~ 72 (355)
|||+|||+|.+|.. ....+. . + .+|+ .+|+++++.+.+.+.... +.| +.... .+.+..+.+++
T Consensus 1 mkI~VIGlGyvGl~-~A~~lA-~-G-~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~-~t~~~~~~~~~- 73 (388)
T PRK15057 1 MKITISGTGYVGLS-NGLLIA-Q-N-HEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFN-ATLDKNEAYRD- 73 (388)
T ss_pred CEEEEECCCHHHHH-HHHHHH-h-C-CcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE-EecchhhhhcC-
Confidence 48999999999976 454444 3 3 5764 669999999887651000 000 11111 01335566654
Q ss_pred CccEEEEecCCc
Q 018445 73 SILGVAVVLAGQ 84 (355)
Q Consensus 73 ~~D~V~I~tp~~ 84 (355)
.|+|++|+|+.
T Consensus 74 -ad~vii~Vpt~ 84 (388)
T PRK15057 74 -ADYVIIATPTD 84 (388)
T ss_pred -CCEEEEeCCCC
Confidence 89999999976
No 143
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.97 E-value=0.01 Score=54.31 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=59.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh-hhcCCcc----------ccccCcchhhhhcC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR-KHFADVE----------CVWGDNGLEQIIKE 71 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~ell~~ 71 (355)
|||.|||+|-.|.. ..-.|..+++ +|+++ |.++.+.+.+.+--. -+-|++. ....++|+++.+++
T Consensus 1 MkI~viGtGYVGLv-~g~~lA~~GH--eVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ 76 (414)
T COG1004 1 MKITVIGTGYVGLV-TGACLAELGH--EVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD 76 (414)
T ss_pred CceEEECCchHHHH-HHHHHHHcCC--eEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc
Confidence 79999999999976 5666677765 66655 999999887654100 0011111 01124788888887
Q ss_pred CCccEEEEecCCccc------HHHHHHHH----H--cCCeEEEec
Q 018445 72 DSILGVAVVLAGQAQ------VDTSLKLL----K--AGKHVIQEK 104 (355)
Q Consensus 72 ~~~D~V~I~tp~~~H------~~~~~~al----~--~GkhVl~EK 104 (355)
.|+++|++|+... ..++.+++ + .++||++-|
T Consensus 77 --adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~K 119 (414)
T COG1004 77 --ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIK 119 (414)
T ss_pred --CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEc
Confidence 5667777655432 23333322 2 246999999
No 144
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.97 E-value=0.0034 Score=56.95 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=67.0
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-HHHHHHHHHHHhhh--cCC-cc------------ccc-cCc
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-EESAKSAAEVARKH--FAD-VE------------CVW-GDN 63 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-~~~~~~~~~~~~~~--~~~-~~------------~~~-~~~ 63 (355)
|++||||-|.|+||+. .++.+...++ ++||+|-|.. ++.+..+.+.=.-+ +++ +. ..+ ...
T Consensus 1 m~~ki~INGfGRIGR~-~~r~~~~~~~-~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 1 MKTKVAINGFGRIGRM-VFRKAIKESA-FEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNR 78 (343)
T ss_pred CceEEEEECcChHHHH-HHHHHhhcCC-cEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 8999999999999985 7777655454 9999999863 33333322200000 111 10 000 012
Q ss_pred chhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 64 GLEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 64 ~~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
+++++- .+.++|+|+-||......+.+..++++| |-|.+==|
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP 122 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence 555553 2357999999999999999999999999 55555544
No 145
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.96 E-value=0.02 Score=51.43 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCc-eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh---c-----CCc----------ccccc
Q 018445 1 MAP-RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH---F-----ADV----------ECVWG 61 (355)
Q Consensus 1 m~~-rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~---~-----~~~----------~~~~~ 61 (355)
|++ ||+|||+|.||.. ....+...+ .+| -++|+++++.+...+...+. . .+. .....
T Consensus 1 ~~i~~I~ViGaG~mG~~-iA~~la~~G--~~V-~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQG-IAQVFARTG--YDV-TIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCCcEEEEECccHHHHH-HHHHHHhcC--CeE-EEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe
Confidence 665 7999999999986 666666543 565 56799999887654321110 0 000 00001
Q ss_pred CcchhhhhcCCCccEEEEecCCccc
Q 018445 62 DNGLEQIIKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 62 ~~~~~ell~~~~~D~V~I~tp~~~H 86 (355)
++++ +.+++ .|+|+.++|+...
T Consensus 77 ~~~~-~~~~~--aDlVieav~e~~~ 98 (291)
T PRK06035 77 STSY-ESLSD--ADFIVEAVPEKLD 98 (291)
T ss_pred eCCH-HHhCC--CCEEEEcCcCcHH
Confidence 1455 34444 8999999999863
No 146
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.95 E-value=0.012 Score=53.36 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=88.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCc--c-hhhhhcCCCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDN--G-LEQIIKEDSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ell~~~~~D~V~I~ 80 (355)
+|+|+|+|..|.. -++..+... .+|+++ |+++++.+.+.+. +....+..+ + .+++-+ ..|+++.+
T Consensus 169 ~V~I~G~GGlGh~-avQ~Aka~g--a~Via~-~~~~~K~e~a~~l------GAd~~i~~~~~~~~~~~~~--~~d~ii~t 236 (339)
T COG1064 169 WVAVVGAGGLGHM-AVQYAKAMG--AEVIAI-TRSEEKLELAKKL------GADHVINSSDSDALEAVKE--IADAIIDT 236 (339)
T ss_pred EEEEECCcHHHHH-HHHHHHHcC--CeEEEE-eCChHHHHHHHHh------CCcEEEEcCCchhhHHhHh--hCcEEEEC
Confidence 7999999976643 444444454 788777 8899998877653 222222111 1 222222 29999999
Q ss_pred cCCcccHHHHHHHHHcC-CeEEEecCC-----------------------CCCHHHHHHHHHHhhccCCCCCCCCeEEEE
Q 018445 81 LAGQAQVDTSLKLLKAG-KHVIQEKPA-----------------------AANISEIENALSRYNSICPDPPGQPIWAVA 136 (355)
Q Consensus 81 tp~~~H~~~~~~al~~G-khVl~EKP~-----------------------a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~ 136 (355)
.+ ..-++....+|+.| ..|++==|. .-+..|.+++++++.+ .++.-.+.
T Consensus 237 v~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~------g~Ikp~i~ 309 (339)
T COG1064 237 VG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAE------GKIKPEIL 309 (339)
T ss_pred CC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHh------CCceeeEE
Confidence 99 77777778888776 666654431 1245778999999999 57777776
Q ss_pred ecccCchHHHHHHHHHHHhCCeeE
Q 018445 137 ENYRFEPAFVECKKLIAEIGDMMS 160 (355)
Q Consensus 137 ~~~r~~p~~~~~k~~i~~iG~i~~ 160 (355)
..++....-..+.++.+ |++..
T Consensus 310 e~~~l~~in~A~~~m~~--g~v~g 331 (339)
T COG1064 310 ETIPLDEINEAYERMEK--GKVRG 331 (339)
T ss_pred eeECHHHHHHHHHHHHc--CCeee
Confidence 56666665555555544 55543
No 147
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=96.95 E-value=0.0035 Score=58.24 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=66.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeC--CHHHHHHHHHHHh--hhcCC-ccc-------------cc-cCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR--SEESAKSAAEVAR--KHFAD-VEC-------------VW-GDN 63 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~--~~~~~~~~~~~~~--~~~~~-~~~-------------~~-~~~ 63 (355)
+||||.|.|+||+. .++.+...++ ++|++|-|+ +.+.+..+.+.=. ..+++ +.. .. ...
T Consensus 86 ~kvgInGFGRIGR~-v~R~~~~~~~-i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRL-VLRIATSRDD-IEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHH-HHHHHhhcCC-cEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 59999999999975 6766554344 999999996 4444433322100 00111 110 00 001
Q ss_pred chhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 64 GLEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 64 ~~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
+++++- .+.++|+|+-||......+.+...+++| |-|++.-|
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 333432 2237999999999999999999999999 89999999
No 148
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.0028 Score=59.12 Aligned_cols=202 Identities=13% Similarity=0.141 Sum_probs=106.7
Q ss_pred ceEEEEe-cccccchhccchhhh------cCCeEEEEEEEeCC--HHHHHHHHHH--------------HhhhcCCc---
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAE------ISDLVSLKFIWSRS--EESAKSAAEV--------------ARKHFADV--- 56 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~------~~~~~~vvai~d~~--~~~~~~~~~~--------------~~~~~~~~--- 56 (355)
..+.|.| +|.-+.+..+|+|-+ ++..++|+|+.-.. .+..+..... +.++...+
T Consensus 8 ~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i~~~~~~~~~~~~~~~F~~~~~Y~ 87 (483)
T COG0364 8 FDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAIEFAKTEEIDEAVWEEFASRLSYV 87 (483)
T ss_pred ceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHhhhcccccccHHHHHHHHhceEEE
Confidence 4566777 566776667788863 44558888886542 1211111100 00010000
Q ss_pred cccc----cCcchhhhhcCCC-ccEEEEecCCcccHHHHHHHHHcCC-----eEEEecCCCCCHHHHHHHHHHhhccCCC
Q 018445 57 ECVW----GDNGLEQIIKEDS-ILGVAVVLAGQAQVDTSLKLLKAGK-----HVIQEKPAAANISEIENALSRYNSICPD 126 (355)
Q Consensus 57 ~~~~----~~~~~~ell~~~~-~D~V~I~tp~~~H~~~~~~al~~Gk-----hVl~EKP~a~~~~e~~~l~~~a~~~~~~ 126 (355)
...| .|..+.+++++.+ .-+.+.++||+.-..++...-++|. -|.+|||++.+++.|++|.+...+.-++
T Consensus 88 ~~d~~~~~~~~~L~~~l~~~~~~~vfYLa~pP~~f~~i~~~L~~~~l~~~~~RlviEKPfG~dL~SA~~Ln~~i~~~F~E 167 (483)
T COG0364 88 SGDYDDPESFDELKDLLGELEGNRVFYLAVPPSLFGTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQISAVFKE 167 (483)
T ss_pred ecCCCCHHHHHHHHHHHhcccCceEEEEecChHHHHHHHHHHHHccCCCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCh
Confidence 0000 0123344455422 4589999999999999888777772 5999999999999999999987765222
Q ss_pred CCCCCeEEEEecccCchHHHHHHH------HHH---HhCCeeEEEEEEeeccCCCCCccCccccccccCccccchhh-HH
Q 018445 127 PPGQPIWAVAENYRFEPAFVECKK------LIA---EIGDMMSVQVIVEGSMNSSNPYFSSSWRRNFTGGFILDMGV-HF 196 (355)
Q Consensus 127 ~~~~~~~~v~~~~r~~p~~~~~k~------~i~---~iG~i~~v~~~~~~~~~~~~~~~~~~w~~~~~gg~l~d~g~-H~ 196 (355)
.-++-+.|-. --+.+|-+-. ++. .=--|-+|+++...... - ..+|..-...|+|-|+-- |.
T Consensus 168 ---~qIyRIDHYL-GKetVQNllalRFaN~~fE~lWNr~~Id~VqIt~aE~~G---v--EgRggYYD~~GalRDMvQNHl 238 (483)
T COG0364 168 ---EQIYRIDHYL-GKETVQNLLALRFANAIFEPLWNRNYIDHVQITVAETLG---V--EGRGGYYDKAGALRDMVQNHL 238 (483)
T ss_pred ---hheEeecccc-CHHHHHHHHHHHHhhhhhhhhhccccceeEEEEEeeecc---c--cccccchhccchHHHHHHHHH
Confidence 3333332211 0011111111 111 11245555555432111 0 112222236789999865 66
Q ss_pred HHHHHHHhCCcceeEEE
Q 018445 197 IAGLRMITGCEVVSVSA 213 (355)
Q Consensus 197 id~~~~l~G~~~~~V~a 213 (355)
+-++..+.=++|.+..+
T Consensus 239 LQlL~LvAME~P~~~~a 255 (483)
T COG0364 239 LQLLCLVAMEPPASFSA 255 (483)
T ss_pred HHHHHHHhcCCCCCCCH
Confidence 66665555335555544
No 149
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.93 E-value=0.0026 Score=52.22 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=70.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH--HHHHHHHHHHhhhcCCccccccCcchhhhhcC---CCccE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE--ESAKSAAEVARKHFADVECVWGDNGLEQIIKE---DSILG 76 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~---~~~D~ 76 (355)
+.||+|||.|+||.....+.|+. ++-.+.-+.+..|| +-+.++++ . +++... +..+-||.. +++|+
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~-g~~le~~~mvgidp~sdglaraar----l--gv~tt~--egv~~ll~~p~~~di~l 74 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRH-GQHLEMAVMVGIDPQSDGLARAAR----L--GVATTH--EGVIGLLNMPEFADIDL 74 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhc-CCcccceeEEccCCCccHHHHHHh----c--CCcchh--hHHHHHHhCCCCCCcce
Confidence 46999999999999866665554 33355555555544 44444443 2 555432 566777764 56889
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEEEecCCCCCH
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANI 110 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~ 110 (355)
|+-+|....|...+-+..++|...+-=.|.+..+
T Consensus 75 vfdatsa~~h~~~a~~~ae~gi~~idltpaaigp 108 (310)
T COG4569 75 VFDATSAGAHVKNAAALAEAGIRLIDLTPAAIGP 108 (310)
T ss_pred EEeccccchhhcchHhHHhcCCceeecchhccCC
Confidence 9999999999999999999999887766665443
No 150
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.93 E-value=0.0015 Score=54.08 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=46.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.||+. ..+.+...+ .+|+ ++|++......+.+ . +. .+ .+++|+++. .|+|+++.|
T Consensus 37 ~tvgIiG~G~IG~~-vA~~l~~fG--~~V~-~~d~~~~~~~~~~~----~--~~--~~--~~l~ell~~--aDiv~~~~p 100 (178)
T PF02826_consen 37 KTVGIIGYGRIGRA-VARRLKAFG--MRVI-GYDRSPKPEEGADE----F--GV--EY--VSLDELLAQ--ADIVSLHLP 100 (178)
T ss_dssp SEEEEESTSHHHHH-HHHHHHHTT---EEE-EEESSCHHHHHHHH----T--TE--EE--SSHHHHHHH---SEEEE-SS
T ss_pred CEEEEEEEcCCcCe-EeeeeecCC--ceeE-EecccCChhhhccc----c--cc--ee--eehhhhcch--hhhhhhhhc
Confidence 48999999999985 777777775 6774 55887776552222 1 22 22 799999997 899999999
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
..
T Consensus 101 lt 102 (178)
T PF02826_consen 101 LT 102 (178)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 151
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.93 E-value=0.003 Score=53.48 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=51.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCccccccC-
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWGD- 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~- 62 (355)
-||.|||+|..|.. .+..|.+.+ +.=+.++|.+ ..+++.++++.++..|.+......
T Consensus 22 ~~VlviG~GglGs~-ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 22 SHVLIIGAGGLGSP-AALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred CCEEEECCCHHHHH-HHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 48999999999985 778887765 3333556776 355666666555555554322110
Q ss_pred ----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCe
Q 018445 63 ----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKH 99 (355)
Q Consensus 63 ----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~Gkh 99 (355)
.+.++++++ .|+|+.|+.+. .+..+...|.+.+++
T Consensus 99 ~i~~~~~~~~~~~--~D~Vi~~~d~~~~r~~l~~~~~~~~ip 138 (202)
T TIGR02356 99 RVTAENLELLINN--VDLVLDCTDNFATRYLINDACVALGTP 138 (202)
T ss_pred cCCHHHHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 123444543 67777766543 222233344444443
No 152
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.92 E-value=0.0062 Score=55.31 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=61.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc----C-Cc-----cccccCcchhhhhcCCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF----A-DV-----ECVWGDNGLEQIIKEDS 73 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~----~-~~-----~~~~~~~~~~ell~~~~ 73 (355)
||+|||+|.||.. ....+.+.+ .+|+ ++|+++++.+.+.+...+.. + +. .....++++++.+++
T Consensus 6 ~I~vIGaG~mG~~-iA~~l~~~g--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 79 (311)
T PRK06130 6 NLAIIGAGTMGSG-IAALFARKG--LQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG-- 79 (311)
T ss_pred EEEEECCCHHHHH-HHHHHHhCC--CeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc--
Confidence 8999999999985 666666543 5664 57999988877665211110 0 00 000012677777765
Q ss_pred ccEEEEecCCccc--HHHHHHHHH--cCCeEEEecCCCCCHH
Q 018445 74 ILGVAVVLAGQAQ--VDTSLKLLK--AGKHVIQEKPAAANIS 111 (355)
Q Consensus 74 ~D~V~I~tp~~~H--~~~~~~al~--~GkhVl~EKP~a~~~~ 111 (355)
.|+|++++|+..+ ..+..+.-. .+..+++--..+.+..
T Consensus 80 aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~ 121 (311)
T PRK06130 80 ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT 121 (311)
T ss_pred CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 8999999999864 334433222 2334555444455544
No 153
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.90 E-value=0.0045 Score=56.14 Aligned_cols=105 Identities=19% Similarity=0.150 Sum_probs=70.6
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeC--CHHHHHHHHHHHhhh--cCC-cc-------------ccccC
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR--SEESAKSAAEVARKH--FAD-VE-------------CVWGD 62 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~--~~~~~~~~~~~~~~~--~~~-~~-------------~~~~~ 62 (355)
|++||||-|.|+||+. .++.+...++ ++||||=|+ +++.+..+.+.=.-+ +++ +. ..+..
T Consensus 1 m~~ki~INGfGRIGr~-v~r~~~~~~~-~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~ 78 (337)
T PTZ00023 1 MVVKLGINGFGRIGRL-VFRAALERED-VEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFE 78 (337)
T ss_pred CceEEEEECcChHHHH-HHHHHHhcCC-eEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeC
Confidence 8899999999999985 7777655454 999999884 555544432200001 111 10 01112
Q ss_pred cchhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCC
Q 018445 63 NGLEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAA 107 (355)
Q Consensus 63 ~~~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a 107 (355)
.+++++- .+.++|+|+-||......+.+..++++| |-|.+-=|+.
T Consensus 79 ~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~ 125 (337)
T PTZ00023 79 KDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPK 125 (337)
T ss_pred CChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCC
Confidence 4556653 3467999999999999999999999999 6666665644
No 154
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.90 E-value=0.0047 Score=51.59 Aligned_cols=81 Identities=21% Similarity=0.076 Sum_probs=60.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|+++|+|+|++|.. ....+...+ .+|+-...+.+++.+..++ ...|.+.. .+.++..+. .|+|++++|
T Consensus 2 ~~~~i~GtGniG~a-lA~~~a~ag--~eV~igs~r~~~~~~a~a~---~l~~~i~~----~~~~dA~~~--aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSA-LALRLAKAG--HEVIIGSSRGPKALAAAAA---ALGPLITG----GSNEDAAAL--ADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHH-HHHHHHhCC--CeEEEecCCChhHHHHHHH---hhcccccc----CChHHHHhc--CCEEEEecc
Confidence 58999999999985 777777765 4776565777777777665 34444432 466777776 799999999
Q ss_pred CcccHHHHHHHHH
Q 018445 83 GQAQVDTSLKLLK 95 (355)
Q Consensus 83 ~~~H~~~~~~al~ 95 (355)
-..+.+++.+.-.
T Consensus 70 ~~a~~~v~~~l~~ 82 (211)
T COG2085 70 FEAIPDVLAELRD 82 (211)
T ss_pred HHHHHhHHHHHHH
Confidence 9999998887653
No 155
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.82 E-value=0.0045 Score=50.98 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=24.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCH
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE 39 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~ 39 (355)
||+|||+|.+|.. .+..|.+.+ +.=+.++|.+.
T Consensus 1 ~VlViG~GglGs~-ia~~La~~G--vg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSN-IAVLLARSG--VGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHH-HHHHHHHcC--CCeEEEEeCCE
Confidence 6899999999985 777777654 44345667765
No 156
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.79 E-value=0.0036 Score=54.89 Aligned_cols=75 Identities=20% Similarity=0.128 Sum_probs=52.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|||+|+.|.. |..+|+.++-+ -++++-.-+. ..+.+. +. +... -+++|+... .|+|++.+|+
T Consensus 20 ~iaIIGYGsQG~a-halNLRDSGln-ViiGlr~g~~-s~~kA~----~d--Gf~V----~~v~ea~k~--ADvim~L~PD 84 (338)
T COG0059 20 KVAIIGYGSQGHA-QALNLRDSGLN-VIIGLRKGSS-SWKKAK----ED--GFKV----YTVEEAAKR--ADVVMILLPD 84 (338)
T ss_pred eEEEEecChHHHH-HHhhhhhcCCc-EEEEecCCch-hHHHHH----hc--CCEe----ecHHHHhhc--CCEEEEeCch
Confidence 8999999999975 88888876643 3335543332 222222 22 4432 579999987 8999999999
Q ss_pred cccHHHHHHH
Q 018445 84 QAQVDTSLKL 93 (355)
Q Consensus 84 ~~H~~~~~~a 93 (355)
..|.++....
T Consensus 85 e~q~~vy~~~ 94 (338)
T COG0059 85 EQQKEVYEKE 94 (338)
T ss_pred hhHHHHHHHH
Confidence 9998887743
No 157
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.78 E-value=0.005 Score=55.37 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=49.2
Q ss_pred CCc-eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh----cC-C-cc----------ccccCc
Q 018445 1 MAP-RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH----FA-D-VE----------CVWGDN 63 (355)
Q Consensus 1 m~~-rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~----~~-~-~~----------~~~~~~ 63 (355)
|++ ||+|||+|.||.. ....+...+ .+| .++|++++..+.+.+...+. .. + +. ... .+
T Consensus 2 ~~~~kI~vIGaG~mG~~-iA~~la~~G--~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~ 76 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNG-IAHVCALAG--YDV-LLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-AT 76 (292)
T ss_pred CCCCEEEEECCcHHHHH-HHHHHHHCC--CeE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eC
Confidence 454 8999999999986 566666544 566 46799999887654321111 00 1 00 011 25
Q ss_pred chhhhhcCCCccEEEEecCCccc
Q 018445 64 GLEQIIKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 64 ~~~ell~~~~~D~V~I~tp~~~H 86 (355)
++++ ++ +.|+|+.++|...+
T Consensus 77 ~~~~-~~--~aD~Vieavpe~~~ 96 (292)
T PRK07530 77 DLED-LA--DCDLVIEAATEDET 96 (292)
T ss_pred CHHH-hc--CCCEEEEcCcCCHH
Confidence 6754 44 48999999999755
No 158
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.77 E-value=0.0021 Score=57.28 Aligned_cols=125 Identities=19% Similarity=0.100 Sum_probs=75.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
++.|+|+|.+|+. .+..|...+ +.-+.+++|+.++++.+++...... .+. + ..+..+.+. +.|+|+.+||.
T Consensus 125 ~vlVlGaGg~a~a-i~~aL~~~g--~~~V~v~~R~~~~a~~l~~~~~~~~-~~~--~-~~~~~~~~~--~~DivInaTp~ 195 (278)
T PRK00258 125 RILILGAGGAARA-VILPLLDLG--VAEITIVNRTVERAEELAKLFGALG-KAE--L-DLELQEELA--DFDLIINATSA 195 (278)
T ss_pred EEEEEcCcHHHHH-HHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhhhcc-cee--e-cccchhccc--cCCEEEECCcC
Confidence 7899999999975 788888665 3345788999999998887432111 011 1 012234443 48999999998
Q ss_pred cccH-----HHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHH
Q 018445 84 QAQV-----DTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVE 147 (355)
Q Consensus 84 ~~H~-----~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~ 147 (355)
..+. ++....+..++. +++= .-++.+ ..+++.|++ .|..+.-|..+-...+..+
T Consensus 196 g~~~~~~~~~~~~~~l~~~~~-v~Di--vY~P~~-T~ll~~A~~------~G~~~~~G~~Ml~~Qa~~~ 254 (278)
T PRK00258 196 GMSGELPLPPLPLSLLRPGTI-VYDM--IYGPLP-TPFLAWAKA------QGARTIDGLGMLVHQAAEA 254 (278)
T ss_pred CCCCCCCCCCCCHHHcCCCCE-EEEe--ecCCCC-CHHHHHHHH------CcCeecCCHHHHHHHHHHH
Confidence 8764 223344544433 3331 111111 346677777 4777777766655444443
No 159
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.012 Score=49.94 Aligned_cols=117 Identities=11% Similarity=0.160 Sum_probs=77.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~t 81 (355)
|+||+||+|+||.. ....+.+.. -++|+ +|++++..+.+.. . ++... ++++|+++. +.+-+|++-.
T Consensus 1 M~iGmiGLGrMG~n-~v~rl~~~g--hdvV~-yD~n~~av~~~~~----~--ga~~a---~sl~el~~~L~~pr~vWlMv 67 (300)
T COG1023 1 MQIGMIGLGRMGAN-LVRRLLDGG--HDVVG-YDVNQTAVEELKD----E--GATGA---ASLDELVAKLSAPRIVWLMV 67 (300)
T ss_pred CcceeeccchhhHH-HHHHHHhCC--CeEEE-EcCCHHHHHHHHh----c--CCccc---cCHHHHHHhcCCCcEEEEEc
Confidence 57899999999986 677777654 46754 5999999988765 2 33222 789999886 4456666666
Q ss_pred CCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCeeEE
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMSV 161 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i~~v 161 (355)
|... .+-+-.++|...-.+ |=++.-|=|..|.-..++.+++-.. .|..+
T Consensus 68 Pag~----------------------it~~vi~~la~~L~~-------GDivIDGGNS~y~Ds~rr~~~l~~k--gi~fl 116 (300)
T COG1023 68 PAGD----------------------ITDAVIDDLAPLLSA-------GDIVIDGGNSNYKDSLRRAKLLAEK--GIHFL 116 (300)
T ss_pred cCCC----------------------chHHHHHHHHhhcCC-------CCEEEECCccchHHHHHHHHHHHhc--CCeEE
Confidence 6542 233333444444444 6667778888888888777777553 44444
Q ss_pred EE
Q 018445 162 QV 163 (355)
Q Consensus 162 ~~ 163 (355)
++
T Consensus 117 D~ 118 (300)
T COG1023 117 DV 118 (300)
T ss_pred ec
Confidence 44
No 160
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.75 E-value=0.012 Score=51.73 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=81.5
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEE-EeCCHHHHHHHHHHHhhhcCCcccc---ccCcchhhhhcCCCcc-E
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFI-WSRSEESAKSAAEVARKHFADVECV---WGDNGLEQIIKEDSIL-G 76 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai-~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ell~~~~~D-~ 76 (355)
+||.|.|+ |.||+. .+.++.+ ++ ++||+. +|+.... +...+.. .. +++.. --+++++++++ ..+| +
T Consensus 1 ~~V~V~Ga~GkMG~~-v~~av~~-~~-~~Lv~~~~~~~~~~-~~~~~~~-g~--~v~v~~~~~~~~~l~~~~~-~~~d~V 72 (275)
T TIGR02130 1 IQIMVNGCPGKMGKA-VAEAADA-AG-LEIVPTSFGGEEEA-ENEAEVA-GK--EILLHGPSEREARIGEVFA-KYPELI 72 (275)
T ss_pred CeEEEeCCCChHHHH-HHHHHhc-CC-CEEEeeEccccccc-cchhhhc-cc--ceeeeccccccccHHHHHh-hcCCEE
Confidence 58999995 678876 7777777 55 999997 7764321 1111110 00 22220 00288999995 4478 8
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHH
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIA 153 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 153 (355)
++-.|.|..=++.+..|++.|+++.+=-. ..+.++..+| ++++ ++.+.++.|+-. ....+.++++
T Consensus 73 vIDFT~P~~~~~n~~~~~~~gv~~ViGTT-G~~~~~~~~l---~~~~------~i~~l~apNfSi--Gv~ll~~~~~ 137 (275)
T TIGR02130 73 CIDYTHPSAVNDNAAFYGKHGIPFVMGTT-GGDREALAKL---VADA------KHPAVIAPNMAK--QIVAFLAAIE 137 (275)
T ss_pred EEECCChHHHHHHHHHHHHCCCCEEEcCC-CCCHHHHHHH---HHhc------CCCEEEECcccH--HHHHHHHHHH
Confidence 89999999999999999999999877532 3444444444 4442 455555555443 3334444444
No 161
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=96.74 E-value=0.0094 Score=53.96 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=67.8
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-HHHHHHHHH--HhhhcCC-cc------------ccc-cCc
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-ESAKSAAEV--ARKHFAD-VE------------CVW-GDN 63 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-~~~~~~~~~--~~~~~~~-~~------------~~~-~~~ 63 (355)
|++||||-|.|+||+. .++.+...++ ++||||=|... +.+..+.+. ....+++ +. ... ...
T Consensus 1 m~~~i~inGfGRIGr~-~~r~~~~~~~-~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 1 MTIKVGINGFGRIGRI-VFRAAQKRSD-IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 78 (331)
T ss_pred CceEEEEEeeChHHHH-HHHHHHHCCC-CEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcC
Confidence 7899999999999986 7777654454 99999998642 222222110 0000111 10 000 002
Q ss_pred chhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCC
Q 018445 64 GLEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAA 107 (355)
Q Consensus 64 ~~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a 107 (355)
+++++- .+.++|+|+-||......+.+..++++| |-|.+-=|+.
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~ 124 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK 124 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCC
Confidence 445442 2347999999999999999999999999 6777776743
No 162
>PRK08223 hypothetical protein; Validated
Probab=96.72 E-value=0.0057 Score=54.15 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=55.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccc---
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVW--- 60 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~--- 60 (355)
-||.|||+|..|.. .+..|.+.+ +.=..++|.|. .+++.++++.++..|.+....
T Consensus 28 s~VlIvG~GGLGs~-va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 28 SRVAIAGLGGVGGI-HLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred CCEEEECCCHHHHH-HHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 48999999999985 788887654 33334555543 345555555444555443211
Q ss_pred --cCcchhhhhcCCCccEEEEecCC---cccHHHHHHHHHcCCeEEE
Q 018445 61 --GDNGLEQIIKEDSILGVAVVLAG---QAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 61 --~~~~~~ell~~~~~D~V~I~tp~---~~H~~~~~~al~~GkhVl~ 102 (355)
..++.++++++ +|+|+-++.+ ..++.+-..|.+.|++++.
T Consensus 105 ~l~~~n~~~ll~~--~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 105 GIGKENADAFLDG--VDVYVDGLDFFEFDARRLVFAACQQRGIPALT 149 (287)
T ss_pred ccCccCHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 11345556654 6777666655 3555566666666665544
No 163
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.71 E-value=0.0051 Score=56.33 Aligned_cols=96 Identities=22% Similarity=0.103 Sum_probs=62.0
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH---------------------HHHHHHHHHHhhhcCCccccc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE---------------------ESAKSAAEVARKHFADVECVW 60 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (355)
.-||.|||+|..|.. .+..|.+.+ +.-+.++|.|. .+++.++++.++..|.+....
T Consensus 24 ~~~VlIiG~GglGs~-va~~La~aG--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 24 EKHVLIVGAGALGAA-NAEALVRAG--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred CCcEEEECCCHHHHH-HHHHHHHcC--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 358999999999975 788887765 54557778874 356666666666666654322
Q ss_pred cC-----cchhhhhcCCCccEEEEecCCccc-HHHHHHHHHcCCeEEE
Q 018445 61 GD-----NGLEQIIKEDSILGVAVVLAGQAQ-VDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 61 ~~-----~~~~ell~~~~~D~V~I~tp~~~H-~~~~~~al~~GkhVl~ 102 (355)
.. .++++++++ .|+|+.+|.+..- +-+...|.+.|++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~--~DlVid~~D~~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 101 VVTDVTVEELEELVKE--VDLIIDATDNFDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred EeccCCHHHHHHHhcC--CCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 345666665 8999999876533 3334556666766443
No 164
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.71 E-value=0.014 Score=49.21 Aligned_cols=98 Identities=20% Similarity=0.106 Sum_probs=63.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|+|+|+|.+|.. ....|.+.+ .+|+ ++|+++++.+.+.+ .+ +.. + -+.++++.. ++|+++-|..
T Consensus 29 k~v~I~G~G~vG~~-~A~~L~~~G--~~Vv-v~D~~~~~~~~~~~---~~--g~~--~--v~~~~l~~~-~~Dv~vp~A~ 94 (200)
T cd01075 29 KTVAVQGLGKVGYK-LAEHLLEEG--AKLI-VADINEEAVARAAE---LF--GAT--V--VAPEEIYSV-DADVFAPCAL 94 (200)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEE-EEcCCHHHHHHHHH---Hc--CCE--E--Ecchhhccc-cCCEEEeccc
Confidence 58999999999975 667777654 6887 88999998888765 22 222 1 244777763 6999986655
Q ss_pred Cc-ccHHHHHHHHHcCCeEEEecCCCCCH-HHHHHHH
Q 018445 83 GQ-AQVDTSLKLLKAGKHVIQEKPAAANI-SEIENAL 117 (355)
Q Consensus 83 ~~-~H~~~~~~al~~GkhVl~EKP~a~~~-~e~~~l~ 117 (355)
.. .+.+.+.+ | +..+++|+--.... .++.+++
T Consensus 95 ~~~I~~~~~~~-l--~~~~v~~~AN~~~~~~~~~~~L 128 (200)
T cd01075 95 GGVINDDTIPQ-L--KAKAIAGAANNQLADPRHGQML 128 (200)
T ss_pred ccccCHHHHHH-c--CCCEEEECCcCccCCHhHHHHH
Confidence 33 44444433 2 46788888443333 4554444
No 165
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=96.70 E-value=0.0059 Score=56.39 Aligned_cols=102 Identities=18% Similarity=0.108 Sum_probs=67.8
Q ss_pred CCceEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHh---hh--cC--------------Cccccc
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVAR---KH--FA--------------DVECVW 60 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~---~~--~~--------------~~~~~~ 60 (355)
|++||||.|.|++|+. .++.+...+ +.++|++|-|.... +..+-.++ .+ ++ +-....
T Consensus 59 ~~~kVaInGfGrIGR~-vlr~l~~~~~~~~evvaINd~~~~--~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v 135 (395)
T PLN03096 59 AKIKVAINGFGRIGRN-FLRCWHGRKDSPLDVVAINDTGGV--KQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKV 135 (395)
T ss_pred cccEEEEECcCHHHHH-HHHHHHhCCCCCeEEEEEcCCCCH--HHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEE
Confidence 7899999999999986 788876542 24899999887542 22221110 00 00 000000
Q ss_pred -cCcchhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 61 -GDNGLEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 61 -~~~~~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
...|++++- .+.++|+|+=||......+.+...+++| |-|++-=|
T Consensus 136 ~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 136 VSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred EEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence 012345542 2357999999999999999999999999 77887777
No 166
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.015 Score=51.67 Aligned_cols=85 Identities=19% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|.++|+|||+|-||.. +...|++.+..+.+.+. |++.+..+...+ . ++.-.+. .+. ......+.|+|+++
T Consensus 2 ~~~~v~IvG~GliG~s-~a~~l~~~g~~v~i~g~-d~~~~~~~~a~~----l--gv~d~~~-~~~-~~~~~~~aD~Viva 71 (279)
T COG0287 2 ASMKVGIVGLGLMGGS-LARALKEAGLVVRIIGR-DRSAATLKAALE----L--GVIDELT-VAG-LAEAAAEADLVIVA 71 (279)
T ss_pred CCcEEEEECCchHHHH-HHHHHHHcCCeEEEEee-cCcHHHHHHHhh----c--Ccccccc-cch-hhhhcccCCEEEEe
Confidence 4579999999999986 88888876643333322 444444443322 1 3321110 111 12223448999999
Q ss_pred cCCcccHHHHHHHHH
Q 018445 81 LAGQAQVDTSLKLLK 95 (355)
Q Consensus 81 tp~~~H~~~~~~al~ 95 (355)
+|-..-.+++++...
T Consensus 72 vPi~~~~~~l~~l~~ 86 (279)
T COG0287 72 VPIEATEEVLKELAP 86 (279)
T ss_pred ccHHHHHHHHHHhcc
Confidence 999988888887653
No 167
>PLN03139 formate dehydrogenase; Provisional
Probab=96.67 E-value=0.0023 Score=59.33 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=48.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||||+|+||+. .++.+...+ .+|.+ +|++....+...+ . ++.. + ++++|++++ .|+|++++|
T Consensus 200 ktVGIVG~G~IG~~-vA~~L~afG--~~V~~-~d~~~~~~~~~~~----~--g~~~-~--~~l~ell~~--sDvV~l~lP 264 (386)
T PLN03139 200 KTVGTVGAGRIGRL-LLQRLKPFN--CNLLY-HDRLKMDPELEKE----T--GAKF-E--EDLDAMLPK--CDVVVINTP 264 (386)
T ss_pred CEEEEEeecHHHHH-HHHHHHHCC--CEEEE-ECCCCcchhhHhh----c--Ccee-c--CCHHHHHhh--CCEEEEeCC
Confidence 48999999999986 788887764 67754 7887543333221 1 3321 1 689999976 899999998
Q ss_pred Cccc
Q 018445 83 GQAQ 86 (355)
Q Consensus 83 ~~~H 86 (355)
....
T Consensus 265 lt~~ 268 (386)
T PLN03139 265 LTEK 268 (386)
T ss_pred CCHH
Confidence 6544
No 168
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.65 E-value=0.0067 Score=52.39 Aligned_cols=94 Identities=22% Similarity=0.124 Sum_probs=53.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeC-------------------CHHHHHHHHHHHhhhcCCccccccC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR-------------------SEESAKSAAEVARKHFADVECVWGD 62 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (355)
.-||.|||+|..|.. .+..|.+.+ +.-..++|. ...+++.++++.++..|.+......
T Consensus 21 ~~~VlivG~GglGs~-va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVGAGGLGSP-AAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred CCcEEEECCCHHHHH-HHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 358999999999985 788887765 333344443 4456666666666666654322211
Q ss_pred -----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeE
Q 018445 63 -----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHV 100 (355)
Q Consensus 63 -----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhV 100 (355)
.++++++.+ +|+|+.|+.+. .+..+...|.+.|+++
T Consensus 98 ~~i~~~~~~~~~~~--~DvVi~~~d~~~~r~~l~~~~~~~~ip~ 139 (228)
T cd00757 98 ERLDAENAEELIAG--YDLVLDCTDNFATRYLINDACVKLGKPL 139 (228)
T ss_pred ceeCHHHHHHHHhC--CCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 233445544 67777776553 2233334444444443
No 169
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.62 E-value=0.0038 Score=55.83 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=58.4
Q ss_pred ceEEEEecc-cccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAG-IFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G-~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-||+|+|.. ..|.. .++.|..+|+ ++++.+++... + .. .+.++++++ +|+|+.++
T Consensus 2 ~~v~IvGasGy~G~e-l~rlL~~HP~-~el~~l~s~~~-----~---------~~------~~~~~~~~~--~D~vFlal 57 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQ-IRERLSGRDD-IELLSIAPDRR-----K---------DA------AERAKLLNA--ADVAILCL 57 (310)
T ss_pred CeEEEECCCChhHHH-HHHHHhCCCC-eEEEEEecccc-----c---------Cc------CCHhHhhcC--CCEEEECC
Confidence 489999954 45665 8888999987 99999987643 0 10 245666665 99999999
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018445 82 AGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl 101 (355)
|+....+++..+.++|+.|+
T Consensus 58 p~~~s~~~~~~~~~~g~~VI 77 (310)
T TIGR01851 58 PDDAAREAVSLVDNPNTCII 77 (310)
T ss_pred CHHHHHHHHHHHHhCCCEEE
Confidence 99999999999888888654
No 170
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.58 E-value=0.012 Score=53.16 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=51.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCc-c-ccccCcchhhhhcCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADV-E-CVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|||+|||+|.+|.. +...|.+.+ .+| -+++++++..+.+.+..-....+. . .....++.+++ ...|.|+++
T Consensus 1 m~I~IiG~G~~G~~-~a~~L~~~g--~~V-~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~d~vila 73 (304)
T PRK06522 1 MKIAILGAGAIGGL-FGAALAQAG--HDV-TLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL---GPQDLVILA 73 (304)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CeE-EEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc---CCCCEEEEe
Confidence 58999999999974 777777654 355 455777777766654110000000 0 00111455554 458999999
Q ss_pred cCCcccHHHHHHHH
Q 018445 81 LAGQAQVDTSLKLL 94 (355)
Q Consensus 81 tp~~~H~~~~~~al 94 (355)
+++....+++....
T Consensus 74 ~k~~~~~~~~~~l~ 87 (304)
T PRK06522 74 VKAYQLPAALPSLA 87 (304)
T ss_pred cccccHHHHHHHHh
Confidence 99987766665543
No 171
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.58 E-value=0.0065 Score=54.31 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=72.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|||+|.+|.. ....+...+ .+| .++++++++.+.+.+ . +.... .++++++++.+ .|+|+.++|.
T Consensus 153 ~v~IiG~G~iG~a-vA~~L~~~G--~~V-~v~~R~~~~~~~~~~----~--g~~~~-~~~~l~~~l~~--aDiVint~P~ 219 (287)
T TIGR02853 153 NVMVLGFGRTGMT-IARTFSALG--ARV-FVGARSSADLARITE----M--GLIPF-PLNKLEEKVAE--IDIVINTIPA 219 (287)
T ss_pred EEEEEcChHHHHH-HHHHHHHCC--CEE-EEEeCCHHHHHHHHH----C--CCeee-cHHHHHHHhcc--CCEEEECCCh
Confidence 7999999999985 778887765 465 578999887665433 2 22111 12567777765 8999999987
Q ss_pred cccHHHHHHHHHcCCeEEEe---cCCCCCHHHHHHHHHHhhccCCCCCCCCeEE--EEecccCchHH
Q 018445 84 QAQVDTSLKLLKAGKHVIQE---KPAAANISEIENALSRYNSICPDPPGQPIWA--VAENYRFEPAF 145 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~--v~~~~r~~p~~ 145 (355)
..--.-..+.++.+ .++++ +|..++. +.+++. |.... .|..-.+.|..
T Consensus 220 ~ii~~~~l~~~k~~-aliIDlas~Pg~tdf-------~~Ak~~------G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 220 LVLTADVLSKLPKH-AVIIDLASKPGGTDF-------EYAKKR------GIKALLAPGLPGIVAPKT 272 (287)
T ss_pred HHhCHHHHhcCCCC-eEEEEeCcCCCCCCH-------HHHHHC------CCEEEEeCCCCcccCchh
Confidence 53222222333333 34443 5655554 445663 65555 67788888765
No 172
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.55 E-value=0.012 Score=52.37 Aligned_cols=105 Identities=6% Similarity=0.135 Sum_probs=71.9
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-||.|.| .|+.+.. |.+.+...+ +.+++ ..+|.+... ...++++ | .+++|+-+..++|+++|++
T Consensus 7 ~~~~~~g~~~~~~~~-~~~~~~~~g--~~~v~--~V~p~~~~~-------~v~G~~~-y--~sv~dlp~~~~~Dlavi~v 71 (286)
T TIGR01019 7 TKVIVQGITGSQGSF-HTEQMLAYG--TNIVG--GVTPGKGGT-------TVLGLPV-F--DSVKEAVEETGANASVIFV 71 (286)
T ss_pred CcEEEecCCcHHHHH-HHHHHHhCC--CCEEE--EECCCCCcc-------eecCeec-c--CCHHHHhhccCCCEEEEec
Confidence 3788999 6777874 888887765 45554 334442111 0115543 3 8999998854589999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 82 AGQAQVDTSLKLLKAG-KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 82 p~~~H~~~~~~al~~G-khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
|...=.+.+.+|.++| |.+.+--.- ....+.++|.+.++++
T Consensus 72 pa~~v~~~l~e~~~~Gvk~avIis~G-f~e~~~~~l~~~a~~~ 113 (286)
T TIGR01019 72 PAPFAADAIFEAIDAGIELIVCITEG-IPVHDMLKVKRYMEES 113 (286)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHc
Confidence 9999999999999999 455442111 1222457899999995
No 173
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.54 E-value=0.0051 Score=55.00 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=52.0
Q ss_pred CCc-eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH-------hhhc-----------CCcccccc
Q 018445 1 MAP-RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA-------RKHF-----------ADVECVWG 61 (355)
Q Consensus 1 m~~-rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~-------~~~~-----------~~~~~~~~ 61 (355)
|.| ||+|||+|.||.. ....+...+ .+|+ ++|+++++.+...+.. .+.. ..+. .
T Consensus 1 ~~~~kI~VIG~G~mG~~-ia~~la~~g--~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~---~ 73 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNG-IAQVCAVAG--YDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT---G 73 (282)
T ss_pred CCccEEEEEccCHHHHH-HHHHHHHCC--CceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---E
Confidence 665 7999999999986 566666554 4665 4699999886432111 0111 0111 1
Q ss_pred CcchhhhhcCCCccEEEEecCCccc--HHHHHHHH
Q 018445 62 DNGLEQIIKEDSILGVAVVLAGQAQ--VDTSLKLL 94 (355)
Q Consensus 62 ~~~~~ell~~~~~D~V~I~tp~~~H--~~~~~~al 94 (355)
++++++ ++ +.|+|++|+|+..- .++..+..
T Consensus 74 ~~~~~~-~~--~aDlVi~av~e~~~~k~~~~~~l~ 105 (282)
T PRK05808 74 TTDLDD-LK--DADLVIEAATENMDLKKKIFAQLD 105 (282)
T ss_pred eCCHHH-hc--cCCeeeecccccHHHHHHHHHHHH
Confidence 256665 44 48999999998655 45555543
No 174
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.53 E-value=0.004 Score=56.48 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=47.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
+|||+|||+|.||.. ....|.+.+ .+| -++++++. +++++++++ .|+|++++
T Consensus 4 ~m~I~iiG~G~~G~~-lA~~l~~~G--~~V-~~~~r~~~----------------------~~~~~~~~~--advvi~~v 55 (308)
T PRK14619 4 PKTIAILGAGAWGST-LAGLASANG--HRV-RVWSRRSG----------------------LSLAAVLAD--ADVIVSAV 55 (308)
T ss_pred CCEEEEECccHHHHH-HHHHHHHCC--CEE-EEEeCCCC----------------------CCHHHHHhc--CCEEEEEC
Confidence 579999999999985 777777665 466 47787642 356777765 79999999
Q ss_pred CCcccHHHHHHH
Q 018445 82 AGQAQVDTSLKL 93 (355)
Q Consensus 82 p~~~H~~~~~~a 93 (355)
|...+.+++...
T Consensus 56 p~~~~~~v~~~l 67 (308)
T PRK14619 56 SMKGVRPVAEQV 67 (308)
T ss_pred ChHHHHHHHHHH
Confidence 998666666554
No 175
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.51 E-value=0.012 Score=56.21 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=69.3
Q ss_pred ceEEEEec----ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEE
Q 018445 3 PRIAILGA----GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 3 ~rigiiG~----G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
=+|+|||. |.+|.. .+..|.+.+-.-+|..| +|...+ ..++++ | .+++|+-+ .+|+++
T Consensus 8 ~siavvGaS~~~~~~g~~-~~~~l~~~gf~g~v~~V---np~~~~---------i~G~~~-~--~sl~~lp~--~~Dlav 69 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYA-IMKNLIEGGYKGKIYPV---NPKAGE---------ILGVKA-Y--PSVLEIPD--PVDLAV 69 (447)
T ss_pred CEEEEEccCCCCCchHHH-HHHHHHhCCCCCcEEEE---CCCCCc---------cCCccc-c--CCHHHCCC--CCCEEE
Confidence 48999999 567765 77888765411145433 443321 115543 3 89999854 499999
Q ss_pred EecCCcccHHHHHHHHHcC-CeEEE------ecCCCCCHHHHHHHHHHhhcc
Q 018445 79 VVLAGQAQVDTSLKLLKAG-KHVIQ------EKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~G-khVl~------EKP~a~~~~e~~~l~~~a~~~ 123 (355)
|++|+..-.+.+++|.+.| +.+++ |.- ....+..++|.+.++++
T Consensus 70 i~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g-~~g~~~~~~l~~~a~~~ 120 (447)
T TIGR02717 70 IVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVG-EEGAELEQELVEIARKY 120 (447)
T ss_pred EecCHHHHHHHHHHHHhcCCCEEEEECCCccccC-cchHHHHHHHHHHHHHc
Confidence 9999999999999999999 55655 421 11223347899999994
No 176
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.50 E-value=0.017 Score=49.31 Aligned_cols=114 Identities=16% Similarity=0.061 Sum_probs=73.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH----------HHHHHHHHHHh-hhcCCccccccCcchhhhhc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE----------ESAKSAAEVAR-KHFADVECVWGDNGLEQIIK 70 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~ell~ 70 (355)
..||+|.|+|+.|.. ....|.+.+ ..+|+++|.+. +..+...+... ..+|. ..+ .+-++++.
T Consensus 23 g~~vaIqGfGnVG~~-~a~~L~~~G--~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~--~~~--~~~~~l~~ 95 (217)
T cd05211 23 GLTVAVQGLGNVGWG-LAKKLAEEG--GKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKV--QDY--FPGEAILG 95 (217)
T ss_pred CCEEEEECCCHHHHH-HHHHHHHcC--CEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCc--ccc--cCccccee
Confidence 479999999999984 677777664 79999999988 66665544210 00111 111 34577776
Q ss_pred CCCccEEEEecCCc-ccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEE
Q 018445 71 EDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAV 135 (355)
Q Consensus 71 ~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v 135 (355)
. ++|+++-|++.. .+.+.+. +-+..+++|+-=.....++.+++. + +|+.+..
T Consensus 96 ~-~~DVlipaA~~~~i~~~~a~---~l~a~~V~e~AN~p~t~~a~~~L~---~------~Gi~v~P 148 (217)
T cd05211 96 L-DVDIFAPCALGNVIDLENAK---KLKAKVVAEGANNPTTDEALRILH---E------RGIVVAP 148 (217)
T ss_pred c-cccEEeeccccCccChhhHh---hcCccEEEeCCCCCCCHHHHHHHH---H------CCcEEEC
Confidence 5 799999998765 3333333 346889999844333346766653 3 4766654
No 177
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.49 E-value=0.0062 Score=54.10 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=77.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+++|+|+|.+|+. .+..+...+ .+| .++++++++++.+++...... ... . .++++.. ..+.|+|+.+||.
T Consensus 119 ~vliiGaGg~g~a-ia~~L~~~g--~~v-~v~~R~~~~~~~la~~~~~~~-~~~-~---~~~~~~~-~~~~DivInatp~ 188 (270)
T TIGR00507 119 RVLIIGAGGAARA-VALPLLKAD--CNV-IIANRTVSKAEELAERFQRYG-EIQ-A---FSMDELP-LHRVDLIINATSA 188 (270)
T ss_pred EEEEEcCcHHHHH-HHHHHHHCC--CEE-EEEeCCHHHHHHHHHHHhhcC-ceE-E---echhhhc-ccCccEEEECCCC
Confidence 6899999999975 777777654 454 577999999988877442221 111 1 2344432 2458999999998
Q ss_pred cccHHH-----HHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHH
Q 018445 84 QAQVDT-----SLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECK 149 (355)
Q Consensus 84 ~~H~~~-----~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k 149 (355)
..+... ....++.++ ++++= ..++.+. .+++.+++ +|..+.-|..+-...+..+.+
T Consensus 189 gm~~~~~~~~~~~~~l~~~~-~v~D~--~y~p~~T-~ll~~A~~------~G~~~vdG~~Ml~~Qa~~~f~ 249 (270)
T TIGR00507 189 GMSGNIDEPPVPAEKLKEGM-VVYDM--VYNPGET-PFLAEAKS------LGTKTIDGLGMLVAQAALAFE 249 (270)
T ss_pred CCCCCCCCCCCCHHHcCCCC-EEEEe--ccCCCCC-HHHHHHHH------CCCeeeCCHHHHHHHHHHHHH
Confidence 754322 234455554 34442 1111222 57888888 488888877766555544433
No 178
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.48 E-value=0.0079 Score=53.73 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=50.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~tp 82 (355)
++.|||+|..++. .+.+|...+ +.-+.|++|+.++++.+++.+... ..+. .+ ...+++-+. .+.|+|+.+||
T Consensus 127 ~vlvlGaGGaara-i~~aL~~~G--~~~i~I~nRt~~ka~~La~~~~~~-~~~~-~~--~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 127 RGLVIGAGGTSRA-AVYALASLG--VTDITVINRNPDKLSRLVDLGVQV-GVIT-RL--EGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred eEEEEcCcHHHHH-HHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhhhc-Ccce-ec--cchhhhhhcccCCCEEEECCC
Confidence 7999999999975 677777654 455678899999999988743221 1111 11 222333211 45899999999
Q ss_pred Cccc
Q 018445 83 GQAQ 86 (355)
Q Consensus 83 ~~~H 86 (355)
-...
T Consensus 200 ~g~~ 203 (282)
T TIGR01809 200 ADVP 203 (282)
T ss_pred CCCC
Confidence 8753
No 179
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.48 E-value=0.0024 Score=58.20 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=61.0
Q ss_pred CCceEEEEec-ccccchhccchhhh--cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEE
Q 018445 1 MAPRIAILGA-GIFVKTQYIPRLAE--ISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 1 m~~rigiiG~-G~~~~~~~~~~l~~--~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V 77 (355)
+++||||||+ |-.|.. .++.|.+ +|. ++|+.+++.+. ..+.+. +.+....+ .+.++.. -.++|+|
T Consensus 3 ~~~~vaIvGATG~vG~e-llrlL~~~~hP~-~~l~~laS~~s-aG~~~~------~~~~~~~v--~~~~~~~-~~~~Dvv 70 (336)
T PRK08040 3 EGWNIALLGATGAVGEA-LLELLAERQFPV-GELYALASEES-AGETLR------FGGKSVTV--QDAAEFD-WSQAQLA 70 (336)
T ss_pred CCCEEEEEccCCHHHHH-HHHHHhcCCCCc-eEEEEEEccCc-CCceEE------ECCcceEE--EeCchhh-ccCCCEE
Confidence 3689999997 666765 8888887 776 89999977632 222211 11111111 3455532 1359999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl 101 (355)
+.++|+....+++.+++++|+.|+
T Consensus 71 f~a~p~~~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 71 FFVAGREASAAYAEEATNAGCLVI 94 (336)
T ss_pred EECCCHHHHHHHHHHHHHCCCEEE
Confidence 999999999999999999998654
No 180
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.48 E-value=0.0071 Score=55.37 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=60.9
Q ss_pred eEEEEecccccchhccchhhhcC--------CeEEEEEEEeC-----CHHHHHHHHHH--HhhhcCCccc---cccCcch
Q 018445 4 RIAILGAGIFVKTQYIPRLAEIS--------DLVSLKFIWSR-----SEESAKSAAEV--ARKHFADVEC---VWGDNGL 65 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~--------~~~~vvai~d~-----~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~ 65 (355)
||+|||+|.||.. ....+..+. ..+ -+|.+ +++-.+.+.+. ..++.|++.. ...++|+
T Consensus 1 kI~VIGaG~wGtA-LA~~la~ng~~~~~~~~~~V---~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl 76 (342)
T TIGR03376 1 RVAVVGSGNWGTA-IAKIVAENARALPELFEESV---RMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDL 76 (342)
T ss_pred CEEEECcCHHHHH-HHHHHHHcCCcccccCCceE---EEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCH
Confidence 7999999999974 555555544 323 34555 44444444331 1223445411 0013789
Q ss_pred hhhhcCCCccEEEEecCCcccHHHHHHHH---HcCC-eEEEecCCCC
Q 018445 66 EQIIKEDSILGVAVVLAGQAQVDTSLKLL---KAGK-HVIQEKPAAA 108 (355)
Q Consensus 66 ~ell~~~~~D~V~I~tp~~~H~~~~~~al---~~Gk-hVl~EKP~a~ 108 (355)
++++++ .|+|++++|+..+.+++.+.- +.++ =|.+-|=+..
T Consensus 77 ~eal~~--ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 77 VEAAKG--ADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred HHHHhc--CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 999987 789999999999999887753 3343 3556665543
No 181
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.44 E-value=0.0084 Score=47.16 Aligned_cols=95 Identities=21% Similarity=0.137 Sum_probs=55.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccccC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVWGD 62 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (355)
..||.|+|+|..|.. .+..|.+.+ +.=.-++|.+. .+++.+++...+..|.+......
T Consensus 2 ~~~v~iiG~G~vGs~-va~~L~~~G--v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSE-VAKNLARSG--VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEESTSHHHHH-HHHHHHHHT--TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECcCHHHHH-HHHHHHHhC--CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 358999999999986 788887654 33335556532 44555555555555554432211
Q ss_pred -----cchhhhhcCCCccEEEEecCC-cccHHHHHHHHHcCCeEE
Q 018445 63 -----NGLEQIIKEDSILGVAVVLAG-QAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 63 -----~~~~ell~~~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl 101 (355)
.++++++++ .|+|+.|+.+ .....+...|.+.|++++
T Consensus 79 ~~~~~~~~~~~~~~--~d~vi~~~d~~~~~~~l~~~~~~~~~p~i 121 (135)
T PF00899_consen 79 EKIDEENIEELLKD--YDIVIDCVDSLAARLLLNEICREYGIPFI 121 (135)
T ss_dssp SHCSHHHHHHHHHT--SSEEEEESSSHHHHHHHHHHHHHTT-EEE
T ss_pred cccccccccccccC--CCEEEEecCCHHHHHHHHHHHHHcCCCEE
Confidence 234455543 6777776655 344445556666666654
No 182
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.41 E-value=0.0067 Score=55.38 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=47.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
++|||||+|.||+. ....+...+ .+|+ ++|++++..... .. . ..+++++++. .|+|++++|
T Consensus 147 ~~VgIIG~G~IG~~-vA~~L~~~G--~~V~-~~d~~~~~~~~~----------~~-~--~~~l~ell~~--aDiVil~lP 207 (330)
T PRK12480 147 MTVAIIGTGRIGAA-TAKIYAGFG--ATIT-AYDAYPNKDLDF----------LT-Y--KDSVKEAIKD--ADIISLHVP 207 (330)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CEEE-EEeCChhHhhhh----------hh-c--cCCHHHHHhc--CCEEEEeCC
Confidence 58999999999986 677777654 5775 568876543211 11 1 1689999987 799999999
Q ss_pred Cccc
Q 018445 83 GQAQ 86 (355)
Q Consensus 83 ~~~H 86 (355)
...+
T Consensus 208 ~t~~ 211 (330)
T PRK12480 208 ANKE 211 (330)
T ss_pred CcHH
Confidence 8764
No 183
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.41 E-value=0.0094 Score=53.97 Aligned_cols=75 Identities=11% Similarity=0.004 Sum_probs=46.4
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--CCccccccCcchhhhhcCCCccEEEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--ADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
.+||+|||+|.+|.. .+..|...+- ..=+.++|+++++++..+....... ........+++|++ +++ .|+|+|
T Consensus 3 ~~Ki~IiGaG~VG~~-~a~~l~~~~~-~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~--adivvi 77 (312)
T cd05293 3 RNKVTVVGVGQVGMA-CAISILAKGL-ADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TAN--SKVVIV 77 (312)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhcCC-CCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCC--CCEEEE
Confidence 369999999999975 5555554433 3434778998887766544322221 11112222368887 454 899999
Q ss_pred ec
Q 018445 80 VL 81 (355)
Q Consensus 80 ~t 81 (355)
+.
T Consensus 78 ta 79 (312)
T cd05293 78 TA 79 (312)
T ss_pred CC
Confidence 64
No 184
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.41 E-value=0.012 Score=54.72 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=63.9
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~tp 82 (355)
|+.|||+|-|+.- .+..|...+ +.-+.|+.|+.++++.++++ + +.. + ..++|+.+. .+.|+|+.+|.
T Consensus 180 ~vlvIGAGem~~l-va~~L~~~g--~~~i~IaNRT~erA~~La~~---~--~~~--~--~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 180 KVLVIGAGEMGEL-VAKHLAEKG--VKKITIANRTLERAEELAKK---L--GAE--A--VALEELLEALAEADVVISSTS 247 (414)
T ss_pred eEEEEcccHHHHH-HHHHHHhCC--CCEEEEEcCCHHHHHHHHHH---h--CCe--e--ecHHHHHHhhhhCCEEEEecC
Confidence 6999999999974 777787754 67779999999999999983 3 221 1 344444332 33899999876
Q ss_pred Cc---ccHHHHHHHHHcCCe-EEEec
Q 018445 83 GQ---AQVDTSLKLLKAGKH-VIQEK 104 (355)
Q Consensus 83 ~~---~H~~~~~~al~~Gkh-Vl~EK 104 (355)
.. .....+..+++.-++ ++++=
T Consensus 248 a~~~ii~~~~ve~a~~~r~~~livDi 273 (414)
T COG0373 248 APHPIITREMVERALKIRKRLLIVDI 273 (414)
T ss_pred CCccccCHHHHHHHHhcccCeEEEEe
Confidence 54 456777778777777 66553
No 185
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.39 E-value=0.0063 Score=55.69 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=46.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
++|||||+|.||+. ....+.+ +-+.+|. .+|+++.... .. .+. . .+++++++++ .|+|++++|
T Consensus 147 ~~VgIIG~G~IG~~-vA~~L~~-~~g~~V~-~~d~~~~~~~--~~-------~~~-~--~~~l~ell~~--aDvIvl~lP 209 (332)
T PRK08605 147 LKVAVIGTGRIGLA-VAKIFAK-GYGSDVV-AYDPFPNAKA--AT-------YVD-Y--KDTIEEAVEG--ADIVTLHMP 209 (332)
T ss_pred CEEEEECCCHHHHH-HHHHHHh-cCCCEEE-EECCCccHhH--Hh-------hcc-c--cCCHHHHHHh--CCEEEEeCC
Confidence 58999999999985 6666632 2226775 4688765421 11 121 1 1689999986 799999999
Q ss_pred CcccHH
Q 018445 83 GQAQVD 88 (355)
Q Consensus 83 ~~~H~~ 88 (355)
....-.
T Consensus 210 ~t~~t~ 215 (332)
T PRK08605 210 ATKYNH 215 (332)
T ss_pred CCcchh
Confidence 865443
No 186
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.37 E-value=0.026 Score=57.69 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=58.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-||+|||+|.||.. ....+.+.+...+ +-++|+++++.+.+.+ . ++... ..+++++.+++ .|+|++++|
T Consensus 4 ~~I~IIG~G~mG~a-la~~l~~~G~~~~-V~~~d~~~~~~~~a~~----~--g~~~~-~~~~~~~~~~~--aDvVilavp 72 (735)
T PRK14806 4 GRVVVIGLGLIGGS-FAKALRERGLARE-VVAVDRRAKSLELAVS----L--GVIDR-GEEDLAEAVSG--ADVIVLAVP 72 (735)
T ss_pred cEEEEEeeCHHHHH-HHHHHHhcCCCCE-EEEEECChhHHHHHHH----C--CCCCc-ccCCHHHHhcC--CCEEEECCC
Confidence 48999999999985 7777776541134 4557999988776543 2 22100 12567887775 799999999
Q ss_pred CcccHHHHHHHHHc--CCeEEEec
Q 018445 83 GQAQVDTSLKLLKA--GKHVIQEK 104 (355)
Q Consensus 83 ~~~H~~~~~~al~~--GkhVl~EK 104 (355)
+..-.+++....+. ...|++.-
T Consensus 73 ~~~~~~vl~~l~~~~~~~~ii~d~ 96 (735)
T PRK14806 73 VLAMEKVLADLKPLLSEHAIVTDV 96 (735)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEc
Confidence 97544444443321 23455543
No 187
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.37 E-value=0.0047 Score=57.44 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccc-c-cCcchhhh-hcCCCccE
Q 018445 1 MAPRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECV-W-GDNGLEQI-IKEDSILG 76 (355)
Q Consensus 1 m~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~el-l~~~~~D~ 76 (355)
|++||+|||+ |..|.. .++.|.++|. ++|+.+... +...+.+.. .+|.+... . ...+++.. + .++|+
T Consensus 37 ~~~kVaIvGATG~vG~e-LlrlL~~hP~-~el~~l~s~-~saG~~i~~----~~~~l~~~~~~~~~~~~~~~~--~~~Dv 107 (381)
T PLN02968 37 EKKRIFVLGASGYTGAE-VRRLLANHPD-FEITVMTAD-RKAGQSFGS----VFPHLITQDLPNLVAVKDADF--SDVDA 107 (381)
T ss_pred cccEEEEECCCChHHHH-HHHHHHhCCC-CeEEEEECh-hhcCCCchh----hCccccCccccceecCCHHHh--cCCCE
Confidence 5789999996 667775 8888888876 899998774 333333222 11111100 0 00222322 3 35999
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEEE
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl~ 102 (355)
|+.++|+..-.+++.+ +++|+.|+-
T Consensus 108 Vf~Alp~~~s~~i~~~-~~~g~~VID 132 (381)
T PLN02968 108 VFCCLPHGTTQEIIKA-LPKDLKIVD 132 (381)
T ss_pred EEEcCCHHHHHHHHHH-HhCCCEEEE
Confidence 9999999988888888 578865543
No 188
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.37 E-value=0.0047 Score=56.55 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=46.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.||+. ....+...+ .+|. ++|+++.... .. .. +. .+ .++++++++ .|+|++++|
T Consensus 151 ktvgIiG~G~IG~~-vA~~l~~~G--~~V~-~~d~~~~~~~--~~---~~--~~--~~--~~l~ell~~--aDiV~l~lP 213 (333)
T PRK13243 151 KTIGIIGFGRIGQA-VARRAKGFG--MRIL-YYSRTRKPEA--EK---EL--GA--EY--RPLEELLRE--SDFVSLHVP 213 (333)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCC--CEEE-EECCCCChhh--HH---Hc--CC--Ee--cCHHHHHhh--CCEEEEeCC
Confidence 38999999999986 677777664 5765 6688765432 11 12 22 22 689999987 799999999
Q ss_pred Ccc
Q 018445 83 GQA 85 (355)
Q Consensus 83 ~~~ 85 (355)
...
T Consensus 214 ~t~ 216 (333)
T PRK13243 214 LTK 216 (333)
T ss_pred CCh
Confidence 754
No 189
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.35 E-value=0.0077 Score=55.42 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=64.2
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH--hhhcC-Ccc---ccccCcchhhhhcCCCcc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA--RKHFA-DVE---CVWGDNGLEQIIKEDSIL 75 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~--~~~~~-~~~---~~~~~~~~~ell~~~~~D 75 (355)
.+||+|||+|.||.. +...|.+.+. + -++.++++..+.+.+.. ..+.+ +.. ....++|+++.+++ .|
T Consensus 7 ~mkI~IiGaGa~G~a-lA~~La~~g~---v-~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~--aD 79 (341)
T PRK12439 7 EPKVVVLGGGSWGTT-VASICARRGP---T-LQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC--AD 79 (341)
T ss_pred CCeEEEECCCHHHHH-HHHHHHHCCC---E-EEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--CC
Confidence 479999999999985 6666776542 2 24568888887776521 11222 111 00012677777665 79
Q ss_pred EEEEecCCcccHHHHHHHHHc---CC-eEEEecCCCC
Q 018445 76 GVAVVLAGQAQVDTSLKLLKA---GK-HVIQEKPAAA 108 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~---Gk-hVl~EKP~a~ 108 (355)
+|++++|+..+.+++.+.... +. -|.+-|-+..
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 999999999887777765432 22 3578887654
No 190
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.35 E-value=0.011 Score=56.96 Aligned_cols=117 Identities=18% Similarity=0.132 Sum_probs=71.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+++|+|+|.+|+. ....+...+ ++| .+++++.++++.+++. . +.. . .+++++-+-.+.|+|+.|||
T Consensus 333 k~vlIiGaGgiG~a-ia~~L~~~G--~~V-~i~~R~~~~~~~la~~---~--~~~-~---~~~~~~~~l~~~DiVInatP 399 (477)
T PRK09310 333 QHVAIVGAGGAAKA-IATTLARAG--AEL-LIFNRTKAHAEALASR---C--QGK-A---FPLESLPELHRIDIIINCLP 399 (477)
T ss_pred CEEEEEcCcHHHHH-HHHHHHHCC--CEE-EEEeCCHHHHHHHHHH---h--ccc-e---echhHhcccCCCCEEEEcCC
Confidence 47999999999974 677777654 455 4779999988877652 2 111 1 23344332346999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHH
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVE 147 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~ 147 (355)
.....+ ..+. +++++= ...+.+.. +++.|++ .|....-|..+-...+..+
T Consensus 400 ~g~~~~---~~l~---~~v~D~--~Y~P~~T~-ll~~A~~------~G~~~~~G~~Ml~~Qa~~~ 449 (477)
T PRK09310 400 PSVTIP---KAFP---PCVVDI--NTLPKHSP-YTQYARS------QGSSIIYGYEMFAEQALLQ 449 (477)
T ss_pred CCCcch---hHHh---hhEEec--cCCCCCCH-HHHHHHH------CcCEEECcHHHHHHHHHHH
Confidence 987533 1222 244442 22222222 6788888 4777777766555444443
No 191
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.34 E-value=0.0086 Score=54.29 Aligned_cols=77 Identities=8% Similarity=0.199 Sum_probs=49.9
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcC-----Cc-------cccccCcchhhhhcC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFA-----DV-------ECVWGDNGLEQIIKE 71 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~ell~~ 71 (355)
||||||+|.||.. ....+...+ .+| .++|++++..+.+.+..++... +. ...+ .+++++.+++
T Consensus 9 ~VaVIGaG~MG~g-iA~~~a~aG--~~V-~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-~~~l~~av~~ 83 (321)
T PRK07066 9 TFAAIGSGVIGSG-WVARALAHG--LDV-VAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF-VATIEACVAD 83 (321)
T ss_pred EEEEECcCHHHHH-HHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee-cCCHHHHhcC
Confidence 7999999999986 555555543 676 4789999877654432211100 00 0011 2688888876
Q ss_pred CCccEEEEecCCcccH
Q 018445 72 DSILGVAVVLAGQAQV 87 (355)
Q Consensus 72 ~~~D~V~I~tp~~~H~ 87 (355)
.|.|+-+.|...-.
T Consensus 84 --aDlViEavpE~l~v 97 (321)
T PRK07066 84 --ADFIQESAPEREAL 97 (321)
T ss_pred --CCEEEECCcCCHHH
Confidence 89999999987653
No 192
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=96.34 E-value=0.014 Score=55.88 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=61.9
Q ss_pred ceEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-|+.|||.|..+.. ....+.+++ .+.+++|++|.++.+... ..+.+..-..+++++++.+.++|.|+|+.
T Consensus 126 ~rvLIvGag~~a~~-l~~~L~~~~~~g~~vvG~idd~~~~~~~--------i~g~pVlg~~~~l~~~i~~~~id~ViIa~ 196 (445)
T TIGR03025 126 RRVLIVGTGEAARE-LAAALSRNPDLGYRVVGFVDDRPSDRVE--------VAGLPVLGKLDDLVELVRAHRVDEVIIAL 196 (445)
T ss_pred CcEEEEECCHHHHH-HHHHHhhCccCCeEEEEEEeCCcccccc--------cCCCcccCCHHHHHHHHHhCCCCEEEEec
Confidence 37999999999875 777777543 248999999977655311 11333211115677888888999999999
Q ss_pred CCcccH---HHHHHHHHcCCeEEE
Q 018445 82 AGQAQV---DTSLKLLKAGKHVIQ 102 (355)
Q Consensus 82 p~~~H~---~~~~~al~~GkhVl~ 102 (355)
|...+. +++..|-+.|+.|.+
T Consensus 197 p~~~~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 197 PLSEEARILELLLQLRDLGVDVRL 220 (445)
T ss_pred CcccHHHHHHHHHHHHhcCCEEEE
Confidence 987764 455566666666554
No 193
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.30 E-value=0.011 Score=55.05 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=62.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCccccccC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWGD 62 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (355)
.-||.|||+|..|.. .+..|.+.+ +.=+.++|.+ ..+++.++++.++..|.+......
T Consensus 135 ~~~VlvvG~GG~Gs~-ia~~La~~G--vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 135 EARVLLIGAGGLGSP-AALYLAAAG--VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred cCcEEEECCCHHHHH-HHHHHHHcC--CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999975 777777665 4444666877 567777777666666665422111
Q ss_pred -----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEEE
Q 018445 63 -----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 63 -----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl~ 102 (355)
.++++++++ +|+|+.||-+. .+..+...|.+.+++++.
T Consensus 212 ~~~~~~~~~~~~~~--~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~ 255 (376)
T PRK08762 212 ERVTSDNVEALLQD--VDVVVDGADNFPTRYLLNDACVKLGKPLVY 255 (376)
T ss_pred ccCChHHHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 234456654 78888887764 455555666666666544
No 194
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.30 E-value=0.015 Score=52.84 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=66.5
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeC--CHHHHHHHHHHHhhh--cC--Cccc--------------cc
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR--SEESAKSAAEVARKH--FA--DVEC--------------VW 60 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~--~~~~~~~~~~~~~~~--~~--~~~~--------------~~ 60 (355)
|++||||-|.|+||+. .++.+...++ ++||+|-|+ +++....+.+.=.-+ ++ .+.. .+
T Consensus 1 m~~kv~INGfGRIGR~-v~R~~~~~~~-~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~ 78 (342)
T PTZ00353 1 LPITVGINGFGPVGKA-VLFASLTDPL-VTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVS 78 (342)
T ss_pred CCeEEEEECCChHHHH-HHHHHHhcCC-cEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEE
Confidence 8899999999999985 7777655444 999999994 666655543310001 21 1110 00
Q ss_pred cCcchhhh-hcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 61 GDNGLEQI-IKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 61 ~~~~~~el-l~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
...+++++ ..+.++|+|+-||......+-+.+-+++| |-|++==|
T Consensus 79 ~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisap 125 (342)
T PTZ00353 79 AKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQ 125 (342)
T ss_pred ecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCC
Confidence 01233333 22347999999999998777777778886 66666656
No 195
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.27 E-value=0.014 Score=53.49 Aligned_cols=95 Identities=18% Similarity=0.089 Sum_probs=57.2
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH---------------------HHHHHHHHHHhhhcCCccccc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE---------------------ESAKSAAEVARKHFADVECVW 60 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (355)
.-||.|||+|..|.. .+..|.+.+ +.=+.++|.+. .+++.++++.++..|.+....
T Consensus 24 ~~~VlVvG~GglGs~-va~~La~aG--vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 24 EKHVLIIGAGALGTA-NAEMLVRAG--VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred CCcEEEECCCHHHHH-HHHHHHHcC--CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 358999999999985 778887664 44456778863 344444554444555543211
Q ss_pred c-----CcchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEE
Q 018445 61 G-----DNGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 61 ~-----~~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl 101 (355)
. ..+.++++++ .|+|+.++.+. .++.+...|.+.|++.+
T Consensus 101 ~~~~~~~~~~~~~~~~--~DlVid~~Dn~~~r~~ln~~~~~~~iP~i 145 (339)
T PRK07688 101 IVQDVTAEELEELVTG--VDLIIDATDNFETRFIVNDAAQKYGIPWI 145 (339)
T ss_pred EeccCCHHHHHHHHcC--CCEEEEcCCCHHHHHHHHHHHHHhCCCEE
Confidence 1 1234556554 67788776664 44445556666666543
No 196
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.02 Score=49.32 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=60.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC---CCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE---DSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~---~~~D~V~I 79 (355)
|++.|||+|..|.. .++.|.+.+. +|+. .|.++++.+++... +. ......+..+-++.|.+ .+.|+|++
T Consensus 1 m~iiIiG~G~vG~~-va~~L~~~g~--~Vv~-Id~d~~~~~~~~~~--~~--~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRS-VARELSEEGH--NVVL-IDRDEERVEEFLAD--EL--DTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHH-HHHHHHhCCC--ceEE-EEcCHHHHHHHhhh--hc--ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 68999999999985 7888888764 5544 48899998885431 12 22222222333444443 56999999
Q ss_pred ecCCcccHHHH-HHHHH-cCCeEEEec
Q 018445 80 VLAGQAQVDTS-LKLLK-AGKHVIQEK 104 (355)
Q Consensus 80 ~tp~~~H~~~~-~~al~-~GkhVl~EK 104 (355)
+|.++.--.++ ..|++ .|.+-.+=|
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 99996554444 44545 475544444
No 197
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.22 E-value=0.018 Score=52.11 Aligned_cols=97 Identities=19% Similarity=0.083 Sum_probs=56.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCcccc---ccCcchhhhhcCCCccEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECV---WGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~ell~~~~~D~V~ 78 (355)
|||+|||+|.+|.. +...|.+.+ .+|+ ++++ +++.+.+.+..-.. .+..... ...++.+++. ...|+|+
T Consensus 1 mkI~IiG~G~iG~~-~a~~L~~~g--~~V~-~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi 73 (305)
T PRK12921 1 MRIAVVGAGAVGGT-FGGRLLEAG--RDVT-FLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELT--GPFDLVI 73 (305)
T ss_pred CeEEEECCCHHHHH-HHHHHHHCC--CceE-EEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHcc--CCCCEEE
Confidence 58999999999985 777777654 3543 3466 66666655411000 0000000 0014555554 3489999
Q ss_pred EecCCcccHHHHHHHHHc---CCeE-EEecCC
Q 018445 79 VVLAGQAQVDTSLKLLKA---GKHV-IQEKPA 106 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~---GkhV-l~EKP~ 106 (355)
++++...+.+++...... +..| .+-+.+
T Consensus 74 lavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 74 LAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred EEecccCHHHHHHHHHhhcCCCCEEEEeeCCC
Confidence 999999888777655432 2233 345655
No 198
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.21 E-value=0.029 Score=50.03 Aligned_cols=105 Identities=7% Similarity=0.095 Sum_probs=69.9
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-||.|.|. |.++.. .++.|.+.+. +.+.-..+..-. +. ..++++ | .+++|+-+..++|+++|++
T Consensus 9 ~~~~v~~~~~~~g~~-~l~~l~~~g~--~~v~pVnp~~~~-~~--------v~G~~~-y--~sv~dlp~~~~~DlAvi~v 73 (291)
T PRK05678 9 TKVIVQGITGKQGTF-HTEQMLAYGT--NIVGGVTPGKGG-TT--------VLGLPV-F--NTVAEAVEATGANASVIYV 73 (291)
T ss_pred CeEEEeCCCchHHHH-HHHHHHHCCC--CEEEEECCCCCC-Ce--------EeCeec-c--CCHHHHhhccCCCEEEEEc
Confidence 48899996 557765 7888887653 333333333001 11 115543 3 8999998843599999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 82 AGQAQVDTSLKLLKAG-KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 82 p~~~H~~~~~~al~~G-khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
|...=.+.+.+|.++| |.+.+--- ....++.++|.+.++++
T Consensus 74 p~~~v~~~l~e~~~~gvk~avI~s~-Gf~~~~~~~l~~~a~~~ 115 (291)
T PRK05678 74 PPPFAADAILEAIDAGIDLIVCITE-GIPVLDMLEVKAYLERK 115 (291)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHc
Confidence 9999999999999999 44333211 12255567999999994
No 199
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.20 E-value=0.016 Score=50.42 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=24.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE 39 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~ 39 (355)
-||.|||+|..|.. .+..|.+.+ +.=..++|.|.
T Consensus 25 ~~VlvvG~GglGs~-va~~La~~G--vg~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGLGGLGCA-ASQYLAAAG--VGNLTLLDFDT 58 (240)
T ss_pred CcEEEECcCHHHHH-HHHHHHHcC--CCEEEEEeCCc
Confidence 48999999999985 777777654 33334556544
No 200
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.20 E-value=0.054 Score=46.74 Aligned_cols=145 Identities=16% Similarity=0.055 Sum_probs=90.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCccccccC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWGD 62 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (355)
.-||.|||+|..|.. .+.+|.+.+- .=.-++|.+ ..+++.++++..+..|.+......
T Consensus 11 ~~~VlVvG~GGvGs~-va~~Lar~GV--g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGLGGVGSW-AAEALARSGV--GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECCCHHHHH-HHHHHHHcCC--CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 458999999999985 7888876542 222333443 346666677666667765433211
Q ss_pred -----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEE
Q 018445 63 -----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVA 136 (355)
Q Consensus 63 -----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~ 136 (355)
++.++++. .++|+|+.|+-+. ....+...|.+.+++++.--= ...+. .|..+.+.-=
T Consensus 88 ~~i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g-------------~g~~~---dp~~i~i~di 150 (231)
T cd00755 88 EFLTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMG-------------AGGKL---DPTRIRVADI 150 (231)
T ss_pred eecCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeC-------------CcCCC---CCCeEEEccE
Confidence 24566664 4589999996654 445677788888888877521 12221 1134445555
Q ss_pred ecccCchHHHHHHHHHHHhCCeeEEEEEEe
Q 018445 137 ENYRFEPAFVECKKLIAEIGDMMSVQVIVE 166 (355)
Q Consensus 137 ~~~r~~p~~~~~k~~i~~iG~i~~v~~~~~ 166 (355)
+....+|..+.+|+.+++-|--..+.+.|+
T Consensus 151 ~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S 180 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIFFGVPVVYS 180 (231)
T ss_pred eccccCcHHHHHHHHHHHcCCCCCeEEEeC
Confidence 566678999999999997121124556554
No 201
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=96.18 E-value=0.018 Score=51.43 Aligned_cols=105 Identities=9% Similarity=0.019 Sum_probs=70.8
Q ss_pred eEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||.|.| +|..+. .|.+.+...+ .+|++=..+.....+ ..++++ | .+++|+.+.+++|+++|++|
T Consensus 14 ~v~~~gi~~~~~~-~~~~~~~~yg--t~~~~gV~p~~~~~~---------i~G~~~-y--~sv~dlp~~~~~DlAvI~vP 78 (300)
T PLN00125 14 RVICQGITGKNGT-FHTEQAIEYG--TKMVGGVTPKKGGTE---------HLGLPV-F--NTVAEAKAETKANASVIYVP 78 (300)
T ss_pred eEEEecCCCHHHH-HHHHHHHHhC--CcEEEEECCCCCCce---------EcCeec-c--CCHHHHhhccCCCEEEEecC
Confidence 788888 677787 4899888885 477776666521111 115553 3 89999998667899999999
Q ss_pred CcccHHHHHHHHHcCCe-EEEecCCCCCHHHHHHHHHHhhcc
Q 018445 83 GQAQVDTSLKLLKAGKH-VIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 83 ~~~H~~~~~~al~~Gkh-Vl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
...=.+.+++|+++|.+ +.+=---......-+++.+.++++
T Consensus 79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~ 120 (300)
T PLN00125 79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120 (300)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhc
Confidence 99999999999999955 434211111111234455557773
No 202
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.17 E-value=0.019 Score=53.28 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=56.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCccccccC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWGD 62 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (355)
.-||.|||+|..|.. .+..|.+.+ +.=+.++|.+ ..+++.++++.++..|.+......
T Consensus 41 ~~~VliiG~GglG~~-v~~~La~~G--vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGAGGLGCP-AMQSLASAG--VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred CCcEEEECCCHHHHH-HHHHHHHcC--CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 358999999999985 788887655 3333556665 345666666555555654322211
Q ss_pred -----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeE
Q 018445 63 -----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHV 100 (355)
Q Consensus 63 -----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhV 100 (355)
.+.++++++ +|+|+.|+-+. .++.+-..|.+.|+++
T Consensus 118 ~~i~~~~~~~~~~~--~DlVid~~Dn~~~r~~in~~~~~~~iP~ 159 (370)
T PRK05600 118 ERLTAENAVELLNG--VDLVLDGSDSFATKFLVADAAEITGTPL 159 (370)
T ss_pred eecCHHHHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 234556654 77777777663 3333344555555543
No 203
>PLN00203 glutamyl-tRNA reductase
Probab=96.17 E-value=0.017 Score=55.85 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=56.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccc-cCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVW-GDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ell~~~~~D~V~I~t 81 (355)
-+|+|||+|.+|.. .+..|...+ +.-+.++++++++++.+++. + ++....+ .+++..+.+.+ .|+|+.+|
T Consensus 267 kkVlVIGAG~mG~~-~a~~L~~~G--~~~V~V~nRs~era~~La~~---~-~g~~i~~~~~~dl~~al~~--aDVVIsAT 337 (519)
T PLN00203 267 ARVLVIGAGKMGKL-LVKHLVSKG--CTKMVVVNRSEERVAALREE---F-PDVEIIYKPLDEMLACAAE--ADVVFTST 337 (519)
T ss_pred CEEEEEeCHHHHHH-HHHHHHhCC--CCeEEEEeCCHHHHHHHHHH---h-CCCceEeecHhhHHHHHhc--CCEEEEcc
Confidence 48999999999985 788887654 44457889999999998863 2 1221111 11455566654 89999997
Q ss_pred CCc---ccHHHHHHHHH
Q 018445 82 AGQ---AQVDTSLKLLK 95 (355)
Q Consensus 82 p~~---~H~~~~~~al~ 95 (355)
+.. ...+++..+.+
T Consensus 338 ~s~~pvI~~e~l~~~~~ 354 (519)
T PLN00203 338 SSETPLFLKEHVEALPP 354 (519)
T ss_pred CCCCCeeCHHHHHHhhh
Confidence 543 34566666543
No 204
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0052 Score=55.75 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=69.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.||+. ....+...+ ++|.+. |+...+...... +... ..+++++|+. .|+|.+.+|
T Consensus 143 kTvGIiG~G~IG~~-va~~l~afg--m~v~~~-d~~~~~~~~~~~-------~~~~---~~~Ld~lL~~--sDiv~lh~P 206 (324)
T COG0111 143 KTVGIIGLGRIGRA-VAKRLKAFG--MKVIGY-DPYSPRERAGVD-------GVVG---VDSLDELLAE--ADILTLHLP 206 (324)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CeEEEE-CCCCchhhhccc-------ccee---cccHHHHHhh--CCEEEEcCC
Confidence 47999999999985 666677765 788654 773232211111 2211 2789999998 788999888
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCeeEEE
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMSVQ 162 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i~~v~ 162 (355)
--.- -+|++ .+++ ++..++ |. +.++.-+==-=....+.+.+++ |+|...-
T Consensus 207 lT~e----------T~g~i----------~~~~-~a~MK~-------ga-ilIN~aRG~vVde~aL~~AL~~-G~i~gA~ 256 (324)
T COG0111 207 LTPE----------TRGLI----------NAEE-LAKMKP-------GA-ILINAARGGVVDEDALLAALDS-GKIAGAA 256 (324)
T ss_pred CCcc----------hhccc----------CHHH-HhhCCC-------Ce-EEEECCCcceecHHHHHHHHHc-CCcceEE
Confidence 6422 11111 1111 111222 43 5555554444455667777777 8888777
Q ss_pred EEEe
Q 018445 163 VIVE 166 (355)
Q Consensus 163 ~~~~ 166 (355)
....
T Consensus 257 lDVf 260 (324)
T COG0111 257 LDVF 260 (324)
T ss_pred ecCC
Confidence 6653
No 205
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.14 E-value=0.014 Score=55.15 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=59.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|+|||+|.+|.. .+..|...+ +.-+.+++++.++++.+++. .. ..... ++++.+.+.. .|+|+.||+
T Consensus 181 ~~VlViGaG~iG~~-~a~~L~~~G--~~~V~v~~rs~~ra~~la~~---~g-~~~i~--~~~l~~~l~~--aDvVi~aT~ 249 (417)
T TIGR01035 181 KKALLIGAGEMGEL-VAKHLLRKG--VGKILIANRTYERAEDLAKE---LG-GEAVK--FEDLEEYLAE--ADIVISSTG 249 (417)
T ss_pred CEEEEECChHHHHH-HHHHHHHCC--CCEEEEEeCCHHHHHHHHHH---cC-CeEee--HHHHHHHHhh--CCEEEECCC
Confidence 38999999999985 777787654 34456789999998877762 21 11111 1566666664 899999988
Q ss_pred Cccc---HHHHHHHHHcC-C-eEEEecC
Q 018445 83 GQAQ---VDTSLKLLKAG-K-HVIQEKP 105 (355)
Q Consensus 83 ~~~H---~~~~~~al~~G-k-hVl~EKP 105 (355)
...+ .+++..++... + -+++.=+
T Consensus 250 s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 250 APHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred CCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 7655 35555554432 2 2555543
No 206
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.14 E-value=0.014 Score=49.18 Aligned_cols=93 Identities=15% Similarity=0.072 Sum_probs=54.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccccC-
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVWGD- 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~- 62 (355)
-||.|||+|..|.. .+..|...+ +.=+.++|.+. .+++.+++..++..|.+......
T Consensus 22 s~VlIiG~gglG~e-vak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 22 ARILLIGLKGLGAE-IAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred CcEEEEcCCHHHHH-HHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 48999999999986 788887654 55556667642 34555555555666665432211
Q ss_pred ---cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeE
Q 018445 63 ---NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHV 100 (355)
Q Consensus 63 ---~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhV 100 (355)
...++++++ .|+|+.++.+. .+..+-..|.+.|+++
T Consensus 99 ~~~~~~~~~~~~--~dvVi~~~~~~~~~~~ln~~c~~~~ip~ 138 (197)
T cd01492 99 DISEKPEEFFSQ--FDVVVATELSRAELVKINELCRKLGVKF 138 (197)
T ss_pred CccccHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 122344443 67777776542 3344445555555443
No 207
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.12 E-value=0.038 Score=47.56 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=71.6
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeC----------CHHHHHHHHHHHhh--hcCCccccccCcchhhh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR----------SEESAKSAAEVARK--HFADVECVWGDNGLEQI 68 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~el 68 (355)
|.+||+|.|+|.+|+. .+..|.+.+ .+|++|+|. |.+......+.... .++.. .+ -+.+++
T Consensus 30 ~~~~v~I~G~G~VG~~-~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~--~~--~~~~~i 102 (227)
T cd01076 30 AGARVAIQGFGNVGSH-AARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGA--ER--ITNEEL 102 (227)
T ss_pred cCCEEEEECCCHHHHH-HHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCc--ee--cCCccc
Confidence 4579999999999985 677777653 899999999 77776665542110 01111 11 245677
Q ss_pred hcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEEEec---CCCCCHHHHHHHHHHhhccCCCCCCCCeEEE
Q 018445 69 IKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVIQEK---PAAANISEIENALSRYNSICPDPPGQPIWAV 135 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl~EK---P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v 135 (355)
+.. ++|+++=|++.. .+.+.+.. + ...+++|- |++ .++.+++. + +|+.+..
T Consensus 103 ~~~-~~Dvlip~a~~~~i~~~~~~~-l--~a~~I~egAN~~~t---~~a~~~L~---~------rGi~~~P 157 (227)
T cd01076 103 LEL-DCDILIPAALENQITADNADR-I--KAKIIVEAANGPTT---PEADEILH---E------RGVLVVP 157 (227)
T ss_pred eee-cccEEEecCccCccCHHHHhh-c--eeeEEEeCCCCCCC---HHHHHHHH---H------CCCEEEC
Confidence 774 789999887665 44444443 3 37788886 553 44554442 3 4777654
No 208
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.12 E-value=0.011 Score=54.63 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=52.7
Q ss_pred CceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
+.||+|||+ |-||.. +...|++..+ .+|++ +|++ + .. ..+.++++.+ .|+|++|
T Consensus 4 ~~~I~IIGl~GliGgs-lA~alk~~~~-~~V~g-~D~~--------d-------~~-----~~~~~~~v~~--aDlVila 58 (370)
T PRK08818 4 QPVVGIVGSAGAYGRW-LARFLRTRMQ-LEVIG-HDPA--------D-------PG-----SLDPATLLQR--ADVLIFS 58 (370)
T ss_pred CCEEEEECCCCHHHHH-HHHHHHhcCC-CEEEE-EcCC--------c-------cc-----cCCHHHHhcC--CCEEEEe
Confidence 469999999 999986 8888886433 67765 5763 1 10 1567777765 8999999
Q ss_pred cCCcccHHHHHHHHHc
Q 018445 81 LAGQAQVDTSLKLLKA 96 (355)
Q Consensus 81 tp~~~H~~~~~~al~~ 96 (355)
+|...-.+++.+....
T Consensus 59 vPv~~~~~~l~~l~~~ 74 (370)
T PRK08818 59 APIRHTAALIEEYVAL 74 (370)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999988888876653
No 209
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=96.11 E-value=0.024 Score=51.56 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=67.7
Q ss_pred ceEEEEecccccchhccchhhhc--CCeEEEEEEEeCCHHH-HHHHHHHHhhh--cC-------------Cccccc-cCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEI--SDLVSLKFIWSRSEES-AKSAAEVARKH--FA-------------DVECVW-GDN 63 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~--~~~~~vvai~d~~~~~-~~~~~~~~~~~--~~-------------~~~~~~-~~~ 63 (355)
+||||+|.|++|+. .++.+.+. +++++|+||=|..... ...+.+.-..+ ++ +-.... ...
T Consensus 2 ~~IaInGfGrIGR~-~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRN-VLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHH-HHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 69999999999986 78877643 3459999998865322 21111100010 00 000000 012
Q ss_pred chhhhhc-CCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCC
Q 018445 64 GLEQIIK-EDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAA 107 (355)
Q Consensus 64 ~~~ell~-~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a 107 (355)
+++++-- +.++|+|+-||......+.+..++++| |-|.+--|..
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~ 126 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGS 126 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcc
Confidence 4555432 367999999999999999999999999 7788887765
No 210
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.10 E-value=0.0071 Score=55.22 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=57.5
Q ss_pred ceEEEEec-ccccchhccchhh--hcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhh-hcCCCccEEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLA--EISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQI-IKEDSILGVA 78 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~--~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-l~~~~~D~V~ 78 (355)
+||+|||+ |..|.. .++.|. .+|. ++|+.+.+.+.. .+.+. +.+....+ .+.++. ++ ++|+|+
T Consensus 5 ~~IaIvGATG~vG~e-LlrlL~~~~hP~-~~l~~v~s~~~a-G~~l~------~~~~~l~~--~~~~~~~~~--~vD~vF 71 (336)
T PRK05671 5 LDIAVVGATGTVGEA-LVQILEERDFPV-GTLHLLASSESA-GHSVP------FAGKNLRV--REVDSFDFS--QVQLAF 71 (336)
T ss_pred CEEEEEccCCHHHHH-HHHHHhhCCCCc-eEEEEEECcccC-CCeec------cCCcceEE--eeCChHHhc--CCCEEE
Confidence 79999995 778876 888888 5666 899888776432 11111 11111111 222221 33 599999
Q ss_pred EecCCcccHHHHHHHHHcCCeEE
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl 101 (355)
.++|+....+++.+++++|+-|+
T Consensus 72 la~p~~~s~~~v~~~~~~G~~VI 94 (336)
T PRK05671 72 FAAGAAVSRSFAEKARAAGCSVI 94 (336)
T ss_pred EcCCHHHHHHHHHHHHHCCCeEE
Confidence 99999989999999999997544
No 211
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.09 E-value=0.021 Score=48.65 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=24.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
.||+|||+|.+|.. .+..|.+.+ +.=+.++|.+
T Consensus 29 ~~V~ViG~GglGs~-ia~~La~~G--vg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSN-IAVALARSG--VGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHH-HHHHHHHcC--CCeEEEEeCC
Confidence 48999999999985 777887654 3434566766
No 212
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.07 E-value=0.055 Score=52.39 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=59.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc-----CC-------------ccccccCcch
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF-----AD-------------VECVWGDNGL 65 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~ 65 (355)
||||||+|.||.. ....+...+ .+| .++|++++.++...+..++.. .+ +.. .+|+
T Consensus 7 kV~VIGaG~MG~g-IA~~la~aG--~~V-~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~ 79 (503)
T TIGR02279 7 TVAVIGAGAMGAG-IAQVAASAG--HQV-LLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VTDL 79 (503)
T ss_pred EEEEECcCHHHHH-HHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eCCH
Confidence 8999999999986 566666544 566 478999999876533211110 01 111 2678
Q ss_pred hhhhcCCCccEEEEecCCcccHHHH--HHH--HHcCCeEEEecCCCCCHHH
Q 018445 66 EQIIKEDSILGVAVVLAGQAQVDTS--LKL--LKAGKHVIQEKPAAANISE 112 (355)
Q Consensus 66 ~ell~~~~~D~V~I~tp~~~H~~~~--~~a--l~~GkhVl~EKP~a~~~~e 112 (355)
+++ + +.|+|+-+.|........ .+. +-...-|++----+.++.+
T Consensus 80 ~~l-~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~ 127 (503)
T TIGR02279 80 HAL-A--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITA 127 (503)
T ss_pred HHh-C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence 764 3 489999999987664443 221 1223345554444555543
No 213
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=96.06 E-value=0.031 Score=53.32 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.0
Q ss_pred EEEEecCCcccHHHHHHHHHcC-------CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAG-------KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~G-------khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
++++++||..-..++...-+.| .-|.+|||++.+++.|++|.+...+.
T Consensus 130 ifYLA~PP~~f~~i~~~L~~~~l~~~g~~~RiviEKPFG~Dl~SA~~Ln~~l~~~ 184 (491)
T PLN02539 130 LFYLALPPSVYPPVCKMIKKCCMNKSGLWTRIVVEKPFGKDLESAEELSSQIGEL 184 (491)
T ss_pred EEEEecChHHHHHHHHHHHHhcCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999998888887766666 37999999999999999999877664
No 214
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.05 E-value=0.011 Score=54.57 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=63.0
Q ss_pred CceEEEEecccccchhccchhhhcCCeE----EEEEEEeCCHH-----HHHHHHH--HHhhhcCCcccc---ccCcchhh
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLV----SLKFIWSRSEE-----SAKSAAE--VARKHFADVECV---WGDNGLEQ 67 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~----~vvai~d~~~~-----~~~~~~~--~~~~~~~~~~~~---~~~~~~~e 67 (355)
++||+|||+|.||.. ....+.++.... .-|-+|.++++ -.+.+.+ .+.++.|++.-- ..++|+++
T Consensus 11 ~~ki~ViGaG~wGtA-lA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGSGNWGSA-ISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECCCHHHHH-HHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 579999999999984 666666553100 12345667765 2343332 122344554310 01278888
Q ss_pred hhcCCCccEEEEecCCcccHHHHHHHHH-----cCC-eEEEecCCC
Q 018445 68 IIKEDSILGVAVVLAGQAQVDTSLKLLK-----AGK-HVIQEKPAA 107 (355)
Q Consensus 68 ll~~~~~D~V~I~tp~~~H~~~~~~al~-----~Gk-hVl~EKP~a 107 (355)
.+++ .|+|++++|+....+++.+.-. .++ -|.+-|=+.
T Consensus 90 av~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 90 AVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 8876 7899999999999888877543 122 244666554
No 215
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.05 E-value=0.014 Score=55.34 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred ceEEEEecccccch-hccchhh---hcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCc---cccccCcchhhhhcCCCcc
Q 018445 3 PRIAILGAGIFVKT-QYIPRLA---EISDLVSLKFIWSRSEESAKSAAEVARKHFADV---ECVWGDNGLEQIIKEDSIL 75 (355)
Q Consensus 3 ~rigiiG~G~~~~~-~~~~~l~---~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ell~~~~~D 75 (355)
+||+|||.|.+|.. .++..+. ...+ .+| .++|+++++++.......+..+.. .....++|+++.+++ .|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g-~eV-~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~--AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG-STI-ALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG--AD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC-CEE-EEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC--CC
Confidence 58999999998753 1111232 2332 344 678999999888765443321111 111123788888887 89
Q ss_pred EEEEecCCcccHHHHH
Q 018445 76 GVAVVLAGQAQVDTSL 91 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~ 91 (355)
.|+++.|...+.....
T Consensus 77 ~Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 77 FVINTIQVGGHEYTET 92 (423)
T ss_pred EEEEeeEecCccchhh
Confidence 9999999877665554
No 216
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.05 E-value=0.017 Score=51.44 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=51.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccc-cccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVEC-VWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
++.|+|+|..++. .+.+|...+ +.-+.|++|+.++++.+++.....++.... .....++++.+. +.|+|+.+||
T Consensus 129 ~vlilGaGGaarA-i~~aL~~~g--~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~--~~divINaTp 203 (283)
T PRK14027 129 SVVQVGAGGVGNA-VAYALVTHG--VQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIA--AADGVVNATP 203 (283)
T ss_pred eEEEECCcHHHHH-HHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHh--hcCEEEEcCC
Confidence 6899999999975 677777654 455688899999999988754322222111 110012334444 4899999999
Q ss_pred Cccc
Q 018445 83 GQAQ 86 (355)
Q Consensus 83 ~~~H 86 (355)
-..+
T Consensus 204 ~Gm~ 207 (283)
T PRK14027 204 MGMP 207 (283)
T ss_pred CCCC
Confidence 7664
No 217
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=96.02 E-value=0.0019 Score=53.55 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=38.6
Q ss_pred ccEEEEecCCcccHHHHHHHHHcCC--------eEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 74 ILGVAVVLAGQAQVDTSLKLLKAGK--------HVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 74 ~D~V~I~tp~~~H~~~~~~al~~Gk--------hVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
-=+.+.++||..=..++...-++|. -|.+|||++.+++.|++|.+...+.
T Consensus 106 ~rifYLAvPP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl~SA~~Ln~~l~~~ 163 (183)
T PF00479_consen 106 NRIFYLAVPPSLFGPIARNLSEAGLNEEPNGWSRIVVEKPFGRDLESARELNDQLAEY 163 (183)
T ss_dssp EEEEEE-S-GGGHHHHHHHHHHHT-S-TSSS-EEEEESSTSTSSHHHHHHHHHHHCTT
T ss_pred ceEEEeccCHHHHHHHHHHHHHHhcccccCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3578899999888777776655552 5999999999999999999887653
No 218
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.02 E-value=0.0098 Score=55.59 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=52.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEE-EE----EeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLK-FI----WSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vv-ai----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V 77 (355)
-+|+|||+|.+|.. |.-+++..+ ++++ ++ .|.+....+.+.+ . +.. . .+++|++.. .|+|
T Consensus 37 KtIaIIGyGSqG~A-qAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~----d--GF~--v--~~~~Ea~~~--ADvV 101 (487)
T PRK05225 37 KKIVIVGCGAQGLN-QGLNMRDSG--LDISYALRKEAIAEKRASWRKATE----N--GFK--V--GTYEELIPQ--ADLV 101 (487)
T ss_pred CEEEEEccCHHHHH-HhCCCcccc--ceeEEeccccccccccchHHHHHh----c--CCc--c--CCHHHHHHh--CCEE
Confidence 38999999999974 676666554 5665 22 2323333333322 1 332 1 578999887 8999
Q ss_pred EEecCCcccHHHHH---HHHHcCCe
Q 018445 78 AVVLAGQAQVDTSL---KLLKAGKH 99 (355)
Q Consensus 78 ~I~tp~~~H~~~~~---~al~~Gkh 99 (355)
++.+|+..|..+-. ..|+.|..
T Consensus 102 viLlPDt~q~~v~~~i~p~LK~Ga~ 126 (487)
T PRK05225 102 INLTPDKQHSDVVRAVQPLMKQGAA 126 (487)
T ss_pred EEcCChHHHHHHHHHHHhhCCCCCE
Confidence 99999998766654 44445543
No 219
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.99 E-value=0.026 Score=53.50 Aligned_cols=91 Identities=20% Similarity=0.129 Sum_probs=58.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|+|||+|.+|.. .+..+...+ +.-+.++++++++++.+++. + +.. ...+.++.+.+. +.|+|+.+|+
T Consensus 183 ~~vlViGaG~iG~~-~a~~L~~~G--~~~V~v~~r~~~ra~~la~~---~--g~~-~~~~~~~~~~l~--~aDvVI~aT~ 251 (423)
T PRK00045 183 KKVLVIGAGEMGEL-VAKHLAEKG--VRKITVANRTLERAEELAEE---F--GGE-AIPLDELPEALA--EADIVISSTG 251 (423)
T ss_pred CEEEEECchHHHHH-HHHHHHHCC--CCeEEEEeCCHHHHHHHHHH---c--CCc-EeeHHHHHHHhc--cCCEEEECCC
Confidence 48999999999985 777777553 44457889999999887762 2 111 111145555565 4899999998
Q ss_pred Cccc---HHHHHHHHHc---CCeEEEec
Q 018445 83 GQAQ---VDTSLKLLKA---GKHVIQEK 104 (355)
Q Consensus 83 ~~~H---~~~~~~al~~---GkhVl~EK 104 (355)
.... .+.+..+++. +.-+++.-
T Consensus 252 s~~~~i~~~~l~~~~~~~~~~~~vviDl 279 (423)
T PRK00045 252 APHPIIGKGMVERALKARRHRPLLLVDL 279 (423)
T ss_pred CCCcEEcHHHHHHHHhhccCCCeEEEEe
Confidence 6543 4555555532 22455554
No 220
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=95.98 E-value=0.027 Score=52.57 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCceEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhh------cCC-ccc-------------c
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKH------FAD-VEC-------------V 59 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~------~~~-~~~-------------~ 59 (355)
|++||||=|.|+||+. .++.+...+ +.++||+|=|.... +..+-.+ +| +++ +.. .
T Consensus 74 ~~ikVgINGFGRIGR~-vlR~~~~~~~~~ievVaINd~~~~--~~~ayLl-kyDS~hG~f~~~v~~~~~~~L~v~Gk~I~ 149 (442)
T PLN02237 74 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGV--KNASHLL-KYDSMLGTFKADVKIVDDETISVDGKPIK 149 (442)
T ss_pred ceEEEEEECCChHHHH-HHHHHHHccCCCeEEEEECCCCCH--HHHHHHH-ccccCCCCcCCceEECCCCEEEECCEEEE
Confidence 7899999999999985 777755332 34999999886432 2222211 11 111 100 0
Q ss_pred c-cCcchhhh-hcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 60 W-GDNGLEQI-IKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 60 ~-~~~~~~el-l~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
+ ...+++++ ..+.++|+|+-||......+.+...+++| |-|++-=|
T Consensus 150 V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP 198 (442)
T PLN02237 150 VVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 198 (442)
T ss_pred EEEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCC
Confidence 0 00122233 22357999999999999999999999999 66666544
No 221
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.016 Score=51.81 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=50.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcC-----C-cc---------ccccCcchhhh
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFA-----D-VE---------CVWGDNGLEQI 68 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~-----~-~~---------~~~~~~~~~el 68 (355)
||||||+|.||.. ....+...+ .+| -++|++++..+...+..++... + .. ..-.++|+++
T Consensus 7 ~V~ViGaG~mG~~-iA~~~a~~G--~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 7 RVGVVGAGQMGAG-IAEVCARAG--VDV-LVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred EEEEEcccHHHHH-HHHHHHhCC--CEE-EEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 8999999999986 555555543 565 6779999998774433211110 1 00 0001267754
Q ss_pred hcCCCccEEEEecCCcccHHHHH
Q 018445 69 IKEDSILGVAVVLAGQAQVDTSL 91 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H~~~~~ 91 (355)
+++ .|+|+-+.|.........
T Consensus 82 ~~~--~d~ViEav~E~~~~K~~l 102 (286)
T PRK07819 82 FAD--RQLVIEAVVEDEAVKTEI 102 (286)
T ss_pred hCC--CCEEEEecccCHHHHHHH
Confidence 444 899999999887755443
No 222
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.94 E-value=0.012 Score=55.44 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=51.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-||.|||+|.+|.. .+..|...+ +.-+.|+.|+.++++.+++. +. ... ...++++.+++.+ .|+|+.||+
T Consensus 182 kkvlviGaG~~a~~-va~~L~~~g--~~~I~V~nRt~~ra~~La~~---~~-~~~-~~~~~~l~~~l~~--aDiVI~aT~ 251 (414)
T PRK13940 182 KNVLIIGAGQTGEL-LFRHVTALA--PKQIMLANRTIEKAQKITSA---FR-NAS-AHYLSELPQLIKK--ADIIIAAVN 251 (414)
T ss_pred CEEEEEcCcHHHHH-HHHHHHHcC--CCEEEEECCCHHHHHHHHHH---hc-CCe-EecHHHHHHHhcc--CCEEEECcC
Confidence 38999999999975 788887654 45568999999999998873 21 111 1112555666665 899999987
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
..
T Consensus 252 a~ 253 (414)
T PRK13940 252 VL 253 (414)
T ss_pred CC
Confidence 64
No 223
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.93 E-value=0.024 Score=52.36 Aligned_cols=93 Identities=17% Similarity=0.075 Sum_probs=57.9
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccccC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVWGD 62 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (355)
.-||.|||+|..|.. .+..|.+.+ +.=..++|.+. .+++.++++.++..|.+......
T Consensus 28 ~~~VlivG~GGlGs~-~a~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGAGGLGSP-ALLYLAGAG--VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECCCHHHHH-HHHHHHHcC--CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 358999999999985 777777654 34445666654 56666666666666666533211
Q ss_pred -----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCe
Q 018445 63 -----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKH 99 (355)
Q Consensus 63 -----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~Gkh 99 (355)
++..+++++ .|+|+.|+.+. .++-+...|.+.+++
T Consensus 105 ~~i~~~~~~~~~~~--~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 105 RRLTWSNALDELRD--ADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred eecCHHHHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 223455554 78888887653 333344556666665
No 224
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.93 E-value=0.035 Score=49.99 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=46.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh-------hhcC----------CccccccCcchh
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR-------KHFA----------DVECVWGDNGLE 66 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~-------~~~~----------~~~~~~~~~~~~ 66 (355)
||||||+|.||.. ....+...+ .+| .++|+++++++...+..+ +... +.. .+ .++++
T Consensus 6 ~V~vIG~G~mG~~-iA~~l~~~G--~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~ 79 (295)
T PLN02545 6 KVGVVGAGQMGSG-IAQLAAAAG--MDV-WLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRI-RC-TTNLE 79 (295)
T ss_pred EEEEECCCHHHHH-HHHHHHhcC--CeE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce-Ee-eCCHH
Confidence 7999999999986 666666543 566 577999988765332111 1100 111 11 14554
Q ss_pred hhhcCCCccEEEEecCCcccH
Q 018445 67 QIIKEDSILGVAVVLAGQAQV 87 (355)
Q Consensus 67 ell~~~~~D~V~I~tp~~~H~ 87 (355)
.+++ .|+|+.|.|...+.
T Consensus 80 -~~~~--aD~Vieav~e~~~~ 97 (295)
T PLN02545 80 -ELRD--ADFIIEAIVESEDL 97 (295)
T ss_pred -HhCC--CCEEEEcCccCHHH
Confidence 4544 89999999966553
No 225
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.91 E-value=0.085 Score=44.15 Aligned_cols=130 Identities=13% Similarity=0.032 Sum_probs=83.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEE-Ee
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVA-VV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~-I~ 80 (355)
|||+||..|..|.+ ...++.-..-..+++++.+. |+....+. +..+++|.. ++.|+++ +.
T Consensus 2 mki~vlt~g~yG~R-~~~nl~~~~f~~~~v~v~~~-Pe~~~~fi----------------e~P~~~Lp~~~e~Di~va~~ 63 (224)
T COG1810 2 MKILVLTDGEYGKR-AVNNLACKGFKNQFVAVKEY-PEELPDFI----------------EEPEDLLPKLPEADIVVAYG 63 (224)
T ss_pred cEEEEEeeccchHH-HHHhHhhhccccceEEEEec-cccccchh----------------hCHHHhcCCCCCCCEEEEec
Confidence 69999999999987 77777742211478888887 43322211 456666665 7888877 55
Q ss_pred cCCcccHHHHHHHHHcC-CeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHH--HHHHHHHHHhCC
Q 018445 81 LAGQAQVDTSLKLLKAG-KHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAF--VECKKLIAEIGD 157 (355)
Q Consensus 81 tp~~~H~~~~~~al~~G-khVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~--~~~k~~i~~iG~ 157 (355)
..|+.-+.+...|.+.| +.|++. ....-.-.++|.+.+.+. |+.+.+-..+.-.... -.+++.++.+|+
T Consensus 64 lHPDl~~~L~e~~~~~~~~alIvp--~~~~~g~rkqL~~~~~~~------g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~ 135 (224)
T COG1810 64 LHPDLLLALPEKAAEGGVKALIVP--AEPPEGLRKQLKEFCEEL------GVEFEAPEPFCSLEPNENPHIDEFAERFGK 135 (224)
T ss_pred cCccHHHHHHHHHHhCCccEEEEe--cCCChhHHHHHHHHhhhc------ceeeecCCccccCCCCCChHHHHHHHHcCC
Confidence 77888888888887777 566653 334446778888888873 6666444433322111 244555544555
Q ss_pred e
Q 018445 158 M 158 (355)
Q Consensus 158 i 158 (355)
+
T Consensus 136 P 136 (224)
T COG1810 136 P 136 (224)
T ss_pred c
Confidence 4
No 226
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.91 E-value=0.06 Score=53.54 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=71.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC---CCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE---DSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~---~~~D~V~I 79 (355)
.+|.|+|+|++|+. ..+.|.+.+ .+++ +.|.|+++.+.+.+ . +....|++.+-.++|++ ++.|+|++
T Consensus 401 ~~vII~G~Gr~G~~-va~~L~~~g--~~vv-vID~d~~~v~~~~~----~--g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQV-IGRLLMANK--MRIT-VLERDISAVNLMRK----Y--GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHH-HHHHHHhCC--CCEE-EEECCHHHHHHHHh----C--CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 47999999999985 677777654 4554 44999999988754 3 55566665455566653 56899999
Q ss_pred ecCCcccHHHHHHHHH-cC--CeEEEecCCCCCHHHHHHHHHH
Q 018445 80 VLAGQAQVDTSLKLLK-AG--KHVIQEKPAAANISEIENALSR 119 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~-~G--khVl~EKP~a~~~~e~~~l~~~ 119 (355)
+++++.....+...++ .. .+|++- +.+.+++++|.+.
T Consensus 471 ~~~d~~~n~~i~~~~r~~~p~~~IiaR---a~~~~~~~~L~~~ 510 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHFPHLHILAR---ARGRVEAHELLQA 510 (601)
T ss_pred EeCCHHHHHHHHHHHHHHCCCCeEEEE---eCCHHHHHHHHhC
Confidence 9999866544444333 33 456664 6777777777665
No 227
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.91 E-value=0.013 Score=56.27 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=60.2
Q ss_pred ceEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-|+.|||.|..+.. ....+.+++ .+++++|++|.++...... .+++..-..+++.+++++.++|.|+|+.
T Consensus 129 ~rvLIiGag~~~~~-l~~~L~~~~~~g~~vvG~idd~~~~~~~~--------~gvpVlg~~~dl~~~i~~~~vd~ViIA~ 199 (451)
T TIGR03023 129 RRVLIVGAGELGRR-LAERLARNPELGYRVVGFFDDRPDARTGV--------RGVPVLGKLDDLEELIREGEVDEVYIAL 199 (451)
T ss_pred CcEEEEeCCHHHHH-HHHHHHhCccCCcEEEEEEeCCCcccccc--------CCCCccCCHHHHHHHHHhcCCCEEEEee
Confidence 37999999999875 677777543 2489999999776543211 1333221115677888889999999999
Q ss_pred CCcccH---HHHHHHHHcCCeEEE
Q 018445 82 AGQAQV---DTSLKLLKAGKHVIQ 102 (355)
Q Consensus 82 p~~~H~---~~~~~al~~GkhVl~ 102 (355)
|...+. +++..|-+.|..|.+
T Consensus 200 p~~~~~~~~~ll~~~~~~gv~V~v 223 (451)
T TIGR03023 200 PLAAEDRILELLDALEDLTVDVRL 223 (451)
T ss_pred CcccHHHHHHHHHHHHhcCCEEEE
Confidence 987653 333344445555543
No 228
>PRK07574 formate dehydrogenase; Provisional
Probab=95.90 E-value=0.014 Score=54.31 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=70.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||||+|+||+. ..+.+...+ ++|. ++|+.....+...+ . ++. . +.+++|+++. .|+|+++.|
T Consensus 193 ktVGIvG~G~IG~~-vA~~l~~fG--~~V~-~~dr~~~~~~~~~~----~--g~~-~--~~~l~ell~~--aDvV~l~lP 257 (385)
T PRK07574 193 MTVGIVGAGRIGLA-VLRRLKPFD--VKLH-YTDRHRLPEEVEQE----L--GLT-Y--HVSFDSLVSV--CDVVTIHCP 257 (385)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CEEE-EECCCCCchhhHhh----c--Cce-e--cCCHHHHhhc--CCEEEEcCC
Confidence 48999999999985 677777654 6775 55876533222111 1 332 1 2789999987 799999999
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCeeEEE
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMSVQ 162 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i~~v~ 162 (355)
...+-..+.. +++++..++ |. +.|+.-+=---....+.+.+++ |+|...-
T Consensus 258 lt~~T~~li~---------------------~~~l~~mk~-------ga-~lIN~aRG~iVDe~AL~~AL~s-G~i~GAa 307 (385)
T PRK07574 258 LHPETEHLFD---------------------ADVLSRMKR-------GS-YLVNTARGKIVDRDAVVRALES-GHLAGYA 307 (385)
T ss_pred CCHHHHHHhC---------------------HHHHhcCCC-------Cc-EEEECCCCchhhHHHHHHHHHh-CCccEEE
Confidence 8654332211 122333333 32 4455554444455666667766 7876554
Q ss_pred EE
Q 018445 163 VI 164 (355)
Q Consensus 163 ~~ 164 (355)
..
T Consensus 308 LD 309 (385)
T PRK07574 308 GD 309 (385)
T ss_pred Ee
Confidence 44
No 229
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.87 E-value=0.032 Score=44.25 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=50.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCccccccCc-
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWGDN- 63 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~- 63 (355)
||.|||+|.+|.. .+..|.+.+ +.=+.++|.+ ..+++.++++.++..|.+.......
T Consensus 1 ~VliiG~GglGs~-ia~~L~~~G--v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSE-IALNLARSG--VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHH-HHHHHHHCC--CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 6899999999986 788887755 3323455554 2445555555545555443221111
Q ss_pred ----chhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEE
Q 018445 64 ----GLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 64 ----~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl 101 (355)
+..+++. +.|+|+.|+.+. ....+...|.+.|++++
T Consensus 78 ~~~~~~~~~~~--~~diVi~~~d~~~~~~~l~~~~~~~~i~~i 118 (143)
T cd01483 78 ISEDNLDDFLD--GVDLVIDAIDNIAVRRALNRACKELGIPVI 118 (143)
T ss_pred cChhhHHHHhc--CCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 1123333 366666666552 23334455555555543
No 230
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.86 E-value=0.08 Score=40.16 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=62.1
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC-cchhhhhc--CCCccEEEEec
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD-NGLEQIIK--EDSILGVAVVL 81 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ell~--~~~~D~V~I~t 81 (355)
|.|+|+|.+|.. .+..|.+ .+ .++ -+.|.++++.+.+.+. +....++. ++.+.|.+ -.+.++|+++|
T Consensus 1 vvI~G~g~~~~~-i~~~L~~-~~-~~v-vvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYGRIGRE-IAEQLKE-GG-IDV-VVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-SHHHHH-HHHHHHH-TT-SEE-EEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCCHHHHH-HHHHHHh-CC-CEE-EEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 579999999986 7888887 33 455 4559999998888762 23333332 33333322 15689999999
Q ss_pred CCcccHHHHHHHHHc---CCeEEEecCCCCCHHHHHHHH
Q 018445 82 AGQAQVDTSLKLLKA---GKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 82 p~~~H~~~~~~al~~---GkhVl~EKP~a~~~~e~~~l~ 117 (355)
+++.---.+...++. .++|++. +.+....+.|.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~---~~~~~~~~~l~ 106 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR---VNDPENAELLR 106 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHHH
Confidence 987555444444443 3677776 45555554443
No 231
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.84 E-value=0.053 Score=49.06 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=48.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc---C-CccccccCcchhhhhcCCCccEEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF---A-DVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
||+|||+|.+|.. ....|...+- ..=+.++|+++++++..+....... + ..... ..+++++ . +.|+|++
T Consensus 2 kI~IIGaG~vG~~-~a~~l~~~g~-~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~~~l-~--~aDIVIi 74 (306)
T cd05291 2 KVVIIGAGHVGSS-FAYSLVNQGI-ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDYSDC-K--DADIVVI 74 (306)
T ss_pred EEEEECCCHHHHH-HHHHHHhcCC-CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCHHHh-C--CCCEEEE
Confidence 8999999999975 5666665442 3234788999999887766432221 1 11111 2567764 3 4899999
Q ss_pred ecCCc
Q 018445 80 VLAGQ 84 (355)
Q Consensus 80 ~tp~~ 84 (355)
++...
T Consensus 75 tag~~ 79 (306)
T cd05291 75 TAGAP 79 (306)
T ss_pred ccCCC
Confidence 98764
No 232
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.048 Score=49.04 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=93.2
Q ss_pred CceEEEEe-cccccchhccchhhh-cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 2 APRIAILG-AGIFVKTQYIPRLAE-ISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 2 ~~rigiiG-~G~~~~~~~~~~l~~-~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
++||||+| +|..|+. ++..|.+ +.. +..+.+....+...+.+.+.. ...-.+. ++..++...+++|+|+-
T Consensus 1 ~~~VavvGATG~VG~~-~~~~L~e~~f~-~~~~~~~AS~rSaG~~~~~f~-~~~~~v~-----~~~~~~~~~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQV-LLELLEERHFP-FEELVLLASARSAGKKYIEFG-GKSIGVP-----EDAADEFVFSDVDIVFF 72 (334)
T ss_pred CcEEEEEeccchHHHH-HHHHHHhcCCC-cceEEEEecccccCCcccccc-CccccCc-----cccccccccccCCEEEE
Confidence 47999998 6777876 8888886 555 675555554444444322211 1100111 34455555568999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEec---------CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHH
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQEK---------PAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKK 150 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~EK---------P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~ 150 (355)
|.+...-.++..++.++|.-|+--. |+-...--...|.+.-++ | .+..+-|.-=...+..++-
T Consensus 73 ~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~r-------g-~IianpNCst~~l~~aL~P 144 (334)
T COG0136 73 AAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKR-------G-FIIANPNCSTIQLVLALKP 144 (334)
T ss_pred eCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhhC-------C-CEEECCChHHHHHHHHHHH
Confidence 9999988999999999998776532 442222222335554444 6 6777777777888888888
Q ss_pred HHHHhCCeeEEEEE
Q 018445 151 LIAEIGDMMSVQVI 164 (355)
Q Consensus 151 ~i~~iG~i~~v~~~ 164 (355)
+.+..| |..+.+.
T Consensus 145 L~~~~~-i~~v~Vs 157 (334)
T COG0136 145 LHDAFG-IKRVVVS 157 (334)
T ss_pred HHhhcC-ceEEEEE
Confidence 888744 5555543
No 233
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=95.81 E-value=0.049 Score=51.95 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=46.3
Q ss_pred chhhh---hcCCCccEEEEecCCcccHHHHHHHHHcC-----CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 64 GLEQI---IKEDSILGVAVVLAGQAQVDTSLKLLKAG-----KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 64 ~~~el---l~~~~~D~V~I~tp~~~H~~~~~~al~~G-----khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+|++| ++.+.--+++.++||..-..++...-+.| .-|.+|||++.|++.|++|.+...++
T Consensus 97 ~~~~L~~~l~~~~~~lfYLA~PP~~f~~i~~~L~~~~l~~~~~RiviEKPFG~Dl~SA~~Ln~~l~~~ 164 (482)
T PRK12853 97 DYARLAEALGPGGNPVFYLAVPPSLFAPVVENLGAAGLLPEGRRVVLEKPFGHDLASARALNATLAKV 164 (482)
T ss_pred HHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45555 43223348899999998888887766665 37999999999999999998877764
No 234
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.76 E-value=0.025 Score=50.92 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=67.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-|++|||+|.+|.. .+..+.+.+ .+| .++|+++++.+.+.+ . +.... .++++.+.+.. .|+|+.++|
T Consensus 153 ~kvlViG~G~iG~~-~a~~L~~~G--a~V-~v~~r~~~~~~~~~~----~--G~~~~-~~~~l~~~l~~--aDiVI~t~p 219 (296)
T PRK08306 153 SNVLVLGFGRTGMT-LARTLKALG--ANV-TVGARKSAHLARITE----M--GLSPF-HLSELAEEVGK--IDIIFNTIP 219 (296)
T ss_pred CEEEEECCcHHHHH-HHHHHHHCC--CEE-EEEECCHHHHHHHHH----c--CCeee-cHHHHHHHhCC--CCEEEECCC
Confidence 48999999999985 777777765 554 567999877555432 2 22211 12456667765 899999998
Q ss_pred CcccHHHHHHHHHcCCeEEEe---cCCCCCHHHHHHHHHHhhccCCCCCCCCeEE--EEecccCch
Q 018445 83 GQAQVDTSLKLLKAGKHVIQE---KPAAANISEIENALSRYNSICPDPPGQPIWA--VAENYRFEP 143 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~--v~~~~r~~p 143 (355)
+..-.+-..+.++.| .++++ +|-..+. +.+++ +|+... .+...++.|
T Consensus 220 ~~~i~~~~l~~~~~g-~vIIDla~~pggtd~-------~~a~~------~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 220 ALVLTKEVLSKMPPE-ALIIDLASKPGGTDF-------EYAEK------RGIKALLAPGLPGKVAP 271 (296)
T ss_pred hhhhhHHHHHcCCCC-cEEEEEccCCCCcCe-------eehhh------CCeEEEEECCCCccCCH
Confidence 643222222233433 34443 2322222 24555 366665 666777766
No 235
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.72 E-value=0.014 Score=53.18 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=43.5
Q ss_pred ceEEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-++||||+|+||+. ..+.+. ..+ .+|+ ++|+..... .. . .. +. .+ .+++|+++. .|+|+++.
T Consensus 146 ktvGIiG~G~IG~~-va~~l~~~fg--m~V~-~~~~~~~~~-~~-~---~~--~~--~~--~~l~ell~~--sDvv~lh~ 208 (323)
T PRK15409 146 KTLGIVGMGRIGMA-LAQRAHFGFN--MPIL-YNARRHHKE-AE-E---RF--NA--RY--CDLDTLLQE--SDFVCIIL 208 (323)
T ss_pred CEEEEEcccHHHHH-HHHHHHhcCC--CEEE-EECCCCchh-hH-H---hc--Cc--Ee--cCHHHHHHh--CCEEEEeC
Confidence 38999999999985 566665 454 6776 567653221 11 1 11 22 22 689999997 79999998
Q ss_pred CCc
Q 018445 82 AGQ 84 (355)
Q Consensus 82 p~~ 84 (355)
|-.
T Consensus 209 plt 211 (323)
T PRK15409 209 PLT 211 (323)
T ss_pred CCC
Confidence 854
No 236
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.71 E-value=0.014 Score=53.04 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=45.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-++||||+|+||+. ..+.++..+ .+| ..+|+.+. .+. .+ .....| -+++||++. .|+|.+..|
T Consensus 147 ktvGIiG~GrIG~a-vA~r~~~Fg--m~v-~y~~~~~~-~~~-~~-------~~~~~y--~~l~ell~~--sDii~l~~P 209 (324)
T COG1052 147 KTLGIIGLGRIGQA-VARRLKGFG--MKV-LYYDRSPN-PEA-EK-------ELGARY--VDLDELLAE--SDIISLHCP 209 (324)
T ss_pred CEEEEECCCHHHHH-HHHHHhcCC--CEE-EEECCCCC-hHH-Hh-------hcCcee--ccHHHHHHh--CCEEEEeCC
Confidence 48999999999985 666666443 566 56788765 222 11 111233 459999998 788999888
Q ss_pred Cccc
Q 018445 83 GQAQ 86 (355)
Q Consensus 83 ~~~H 86 (355)
....
T Consensus 210 lt~~ 213 (324)
T COG1052 210 LTPE 213 (324)
T ss_pred CChH
Confidence 7543
No 237
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.71 E-value=0.049 Score=43.16 Aligned_cols=76 Identities=18% Similarity=0.073 Sum_probs=45.8
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCCccccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH--FADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|||+|||+ |..|.. ....|...+-.-+ +.++|+++++++..+..+... +..........+++++ .+ .|+|+|
T Consensus 1 ~KV~IiGa~G~VG~~-~a~~l~~~~l~~e-i~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~~--aDivvi 75 (141)
T PF00056_consen 1 MKVAIIGAAGNVGST-LALLLAQQGLADE-IVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-KD--ADIVVI 75 (141)
T ss_dssp SEEEEESTTSHHHHH-HHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-TT--ESEEEE
T ss_pred CEEEEECCCChHHHH-HHHHHHhCCCCCc-eEEeccCcccceeeehhhhhhhhhccccccccccccccc-cc--ccEEEE
Confidence 69999999 999974 5666654443234 478899988877765433222 1111222211344444 33 899999
Q ss_pred ecCC
Q 018445 80 VLAG 83 (355)
Q Consensus 80 ~tp~ 83 (355)
+.-.
T Consensus 76 tag~ 79 (141)
T PF00056_consen 76 TAGV 79 (141)
T ss_dssp TTST
T ss_pred eccc
Confidence 8643
No 238
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.68 E-value=0.061 Score=48.38 Aligned_cols=84 Identities=8% Similarity=0.058 Sum_probs=63.1
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-||.|-| +|..|. +|.+.+.+.+ .+|||=..+...-.+-. .+ +++. | ++++|+.+..++|+++|++
T Consensus 30 t~v~vqGitg~~g~-~h~~~~~~yg--t~iv~GV~Pgkgg~~v~-----~~--Gvpv-y--~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGT-FHTEQAIEYG--TKMVGGVNPKKAGTTHL-----KH--GLPV-F--ATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHH-HHHHHHHHhC--CcEEEEECCCCCCceEe-----cC--Cccc-c--CCHHHHhcccCCCEEEEec
Confidence 3788888 477887 4898888875 47887666654111100 01 4553 3 8999999987899999999
Q ss_pred CCcccHHHHHHHHHcCCe
Q 018445 82 AGQAQVDTSLKLLKAGKH 99 (355)
Q Consensus 82 p~~~H~~~~~~al~~Gkh 99 (355)
|+..=.+.+.+|+++|..
T Consensus 97 Pa~~v~dai~Ea~~aGI~ 114 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEIP 114 (317)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 999999999999999954
No 239
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.65 E-value=0.015 Score=53.44 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCceEEEEeccc-ccchhccchhhh--cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchh-hhhcCCCccE
Q 018445 1 MAPRIAILGAGI-FVKTQYIPRLAE--ISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLE-QIIKEDSILG 76 (355)
Q Consensus 1 m~~rigiiG~G~-~~~~~~~~~l~~--~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ell~~~~~D~ 76 (355)
+++||+|||+.+ .|.. .++.|.+ +|. ++++.+.+.+.. .+.... . +....+ .+++ +.++ ++|+
T Consensus 6 ~~~kVaVvGAtG~vG~e-LlrlL~~~~hP~-~~l~~las~rsa-Gk~~~~----~--~~~~~v--~~~~~~~~~--~~D~ 72 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQE-FLSVLTDRDFPY-SSLKMLASARSA-GKKVTF----E--GRDYTV--EELTEDSFD--GVDI 72 (344)
T ss_pred CCCeEEEEcCCChHHHH-HHHHHHhCCCCc-ceEEEEEccCCC-CCeeee----c--CceeEE--EeCCHHHHc--CCCE
Confidence 368999999655 5654 7888876 666 788888665332 111111 1 111111 2222 3343 4999
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEE
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl 101 (355)
|+.++|+..-.+++.++.++|+.|+
T Consensus 73 vf~a~p~~~s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 73 ALFSAGGSISKKFGPIAVDKGAVVV 97 (344)
T ss_pred EEECCCcHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999997655
No 240
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.60 E-value=0.066 Score=47.17 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=85.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCcccccc-
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWG- 61 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~- 61 (355)
.-+|.|||+|..|.. .+..|.+.+ +.=+-++|.+ ..+++.+++...+..|.+.....
T Consensus 30 ~s~VlVvG~GGVGs~-vae~Lar~G--Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 30 DAHICVVGIGGVGSW-AAEALARTG--IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred CCCEEEECcCHHHHH-HHHHHHHcC--CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 358999999999975 778887655 1112333433 34555666666566666543211
Q ss_pred ----CcchhhhhcCCCccEEEEecCC-cccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEE
Q 018445 62 ----DNGLEQIIKEDSILGVAVVLAG-QAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVA 136 (355)
Q Consensus 62 ----~~~~~ell~~~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~ 136 (355)
.++.++++. .++|.|+.|.-+ .....+...|.+.+++++.-- ....+. -|..+.+.-=
T Consensus 107 ~~i~~e~~~~ll~-~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~g-------------Gag~k~---dp~~~~~~di 169 (268)
T PRK15116 107 DFITPDNVAEYMS-AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTG-------------GAGGQI---DPTQIQVVDL 169 (268)
T ss_pred cccChhhHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEC-------------CcccCC---CCCeEEEEee
Confidence 134556664 458999999876 566778888889998887551 122222 1234555555
Q ss_pred ecccCchHHHHHHHHHHH
Q 018445 137 ENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 137 ~~~r~~p~~~~~k~~i~~ 154 (355)
+....+|..+.+|+.++.
T Consensus 170 ~~t~~~pla~~~R~~lr~ 187 (268)
T PRK15116 170 AKTIQDPLAAKLRERLKS 187 (268)
T ss_pred ecccCChHHHHHHHHHHH
Confidence 666678999999999986
No 241
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.60 E-value=0.037 Score=50.87 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--CCccc------cccCcchhhhhcCC
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--ADVEC------VWGDNGLEQIIKED 72 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~ell~~~ 72 (355)
|-|||+|||+|.+|.. +...|.+.+ .+|+ ++++++. .+.+.+...... ++... ....++. +.+ .
T Consensus 1 ~~mkI~IiG~G~mG~~-~A~~L~~~G--~~V~-~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ 72 (341)
T PRK08229 1 MMARICVLGAGSIGCY-LGGRLAAAG--ADVT-LIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AAL--A 72 (341)
T ss_pred CCceEEEECCCHHHHH-HHHHHHhcC--CcEE-EEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhc--c
Confidence 7789999999999985 777777654 3554 3566543 343332100000 00000 0001344 333 3
Q ss_pred CccEEEEecCCcccHHHHHHHHH
Q 018445 73 SILGVAVVLAGQAQVDTSLKLLK 95 (355)
Q Consensus 73 ~~D~V~I~tp~~~H~~~~~~al~ 95 (355)
+.|+|++++++....+++.....
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~ 95 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAG 95 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHh
Confidence 58999999999877766655433
No 242
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.59 E-value=0.044 Score=47.36 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=22.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR 37 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~ 37 (355)
||.|||+|..|.. .+..|...+ +.=.-++|.
T Consensus 1 kVlvvG~GGlG~e-ilk~La~~G--vg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGAGGIGCE-LLKNLALMG--FGQIHVIDM 31 (234)
T ss_pred CEEEECCCHHHHH-HHHHHHHcC--CCeEEEEeC
Confidence 6899999999986 788887654 233344455
No 243
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.57 E-value=0.013 Score=53.05 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=43.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.||+. ..+.+...+ .+|++ +|+.... .. . ..+ .+++|+++. .|+|+++.|
T Consensus 148 ktvgIiG~G~IG~~-va~~l~~fg--~~V~~-~~~~~~~---------~~--~--~~~--~~l~ell~~--sDiv~l~~P 206 (314)
T PRK06932 148 STLGVFGKGCLGTE-VGRLAQALG--MKVLY-AEHKGAS---------VC--R--EGY--TPFEEVLKQ--ADIVTLHCP 206 (314)
T ss_pred CEEEEECCCHHHHH-HHHHHhcCC--CEEEE-ECCCccc---------cc--c--ccc--CCHHHHHHh--CCEEEEcCC
Confidence 48999999999986 666666665 67766 4654210 01 1 112 689999998 799999998
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
-.
T Consensus 207 lt 208 (314)
T PRK06932 207 LT 208 (314)
T ss_pred CC
Confidence 54
No 244
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=95.56 E-value=0.06 Score=51.97 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=41.2
Q ss_pred EEEEecCCcccHHHHHHHHHcC------CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAG------KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~G------khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
++++++||..-..++...-++| .-|.+|||++.+++.|++|.+...++
T Consensus 167 lfYLAlPP~~f~~i~~~L~~~~l~~~G~~RiViEKPFG~Dl~SA~~Ln~~l~~~ 220 (542)
T PTZ00309 167 LFYLALPPSVFASVCEGIHRGCMSKNGWVRVIVEKPFGRDLESSEELSNQLEPL 220 (542)
T ss_pred EEEEECCHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999888887766665 36999999999999999999877664
No 245
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=95.56 E-value=0.026 Score=51.38 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCceEEEEecccccchhccchhhhc---CCeEEEEEEEeC--CHHHHHHHHHHHhhh--cC-------------------
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI---SDLVSLKFIWSR--SEESAKSAAEVARKH--FA------------------- 54 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~---~~~~~vvai~d~--~~~~~~~~~~~~~~~--~~------------------- 54 (355)
|++||||-|.|+||+. .++.+... .++++||||-|+ +++.+..+.+.=.-+ ++
T Consensus 2 m~ikVgINGFGRIGR~-v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGINGFGRIGRM-VFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEECcChHHHH-HHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 7889999999999986 67776543 134999999995 444433321100000 10
Q ss_pred --C--ccccccCcchhhhh-cCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecCCC
Q 018445 55 --D--VECVWGDNGLEQII-KEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKPAA 107 (355)
Q Consensus 55 --~--~~~~~~~~~~~ell-~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP~a 107 (355)
+ +...+...+++++- .+.++|.|+=||--....+-+..=|++| |-|++-=|..
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~ 139 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPAS 139 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCC
Confidence 0 00000123555553 2357999999999988888888888898 8999988844
No 246
>PRK08328 hypothetical protein; Provisional
Probab=95.55 E-value=0.049 Score=47.09 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=26.3
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHH
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEES 41 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~ 41 (355)
.-||.|||+|..|.. .+..|.+.+ +.=..++|.+.-.
T Consensus 27 ~~~VlIiG~GGlGs~-ia~~La~~G--vg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSP-VAYYLAAAG--VGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHH-HHHHHHHcC--CCEEEEEcCCccC
Confidence 348999999999975 788887765 3444566766543
No 247
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.53 E-value=0.03 Score=46.37 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=43.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcC------Ccc---------ccccCcchhhh
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFA------DVE---------CVWGDNGLEQI 68 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~el 68 (355)
||+|||+|.||.. ....+... + .+| .++|++++..+...+..++... .+. ....++|++++
T Consensus 1 ~V~ViGaG~mG~~-iA~~~a~~-G-~~V-~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRG-IAALFARA-G-YEV-TLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHH-HHHHHHHT-T-SEE-EEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG
T ss_pred CEEEEcCCHHHHH-HHHHHHhC-C-CcE-EEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH
Confidence 7999999999985 44444444 3 566 6779999988776554332110 000 00012677777
Q ss_pred hcCCCccEEEEecCCccc
Q 018445 69 IKEDSILGVAVVLAGQAQ 86 (355)
Q Consensus 69 l~~~~~D~V~I~tp~~~H 86 (355)
. + .|+|+=+.|....
T Consensus 77 ~-~--adlViEai~E~l~ 91 (180)
T PF02737_consen 77 V-D--ADLVIEAIPEDLE 91 (180)
T ss_dssp C-T--ESEEEE-S-SSHH
T ss_pred h-h--hheehhhccccHH
Confidence 7 3 7888888876544
No 248
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.51 E-value=0.014 Score=53.22 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=57.0
Q ss_pred CceEEEEec-ccccchhccchhhhcCCeEE---EEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEE
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISDLVS---LKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~~---vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V 77 (355)
++||||||+ |-.|.. .++.|.++++ ++ |..+.+... ..+.+ . + .+....+...+.+++ . ++|+|
T Consensus 5 ~~~VaIvGATG~vG~e-ll~lL~~h~~-f~v~~l~~~aS~~s-aGk~~-~----~-~~~~l~v~~~~~~~~-~--~~Div 72 (347)
T PRK06728 5 GYHVAVVGATGAVGQK-IIELLEKETK-FNIAEVTLLSSKRS-AGKTV-Q----F-KGREIIIQEAKINSF-E--GVDIA 72 (347)
T ss_pred CCEEEEEeCCCHHHHH-HHHHHHHCCC-CCcccEEEEECccc-CCCCe-e----e-CCcceEEEeCCHHHh-c--CCCEE
Confidence 579999996 666765 8888887776 77 655655421 11111 0 1 011111100233443 3 49999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl 101 (355)
+.++|+....+++..+.++|..|+
T Consensus 73 f~a~~~~~s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 73 FFSAGGEVSRQFVNQAVSSGAIVI 96 (347)
T ss_pred EECCChHHHHHHHHHHHHCCCEEE
Confidence 999999999999999999997665
No 249
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.49 E-value=0.026 Score=50.37 Aligned_cols=69 Identities=25% Similarity=0.150 Sum_probs=48.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
+++|||||.|.+|+- +...+.+.+. .| -+|||+. -..+++ ++ +.. . ++.+.++.++ .+|.|+.||
T Consensus 52 tl~IaIIGfGnmGqf-lAetli~aGh--~l-i~hsRsd--yssaa~---~y--g~~-~--ft~lhdlcer-hpDvvLlct 116 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQF-LAETLIDAGH--GL-ICHSRSD--YSSAAE---KY--GSA-K--FTLLHDLCER-HPDVVLLCT 116 (480)
T ss_pred ceEEEEEecCcHHHH-HHHHHHhcCc--ee-EecCcch--hHHHHH---Hh--ccc-c--cccHHHHHhc-CCCEEEEEe
Confidence 579999999999984 8888887653 44 4677765 333443 34 332 2 3889998885 489999998
Q ss_pred CCcc
Q 018445 82 AGQA 85 (355)
Q Consensus 82 p~~~ 85 (355)
....
T Consensus 117 sils 120 (480)
T KOG2380|consen 117 SILS 120 (480)
T ss_pred hhhh
Confidence 6543
No 250
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.45 E-value=0.014 Score=52.91 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=46.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||||+|.||+. ..+.+...+ ++|.+ +|+.+.... +....+...++++++++ .|+|+++.|
T Consensus 137 ~tvgIvG~G~IG~~-vA~~l~afG--~~V~~-~~~~~~~~~-----------~~~~~~~~~~l~e~l~~--aDvvv~~lP 199 (312)
T PRK15469 137 FTIGILGAGVLGSK-VAQSLQTWG--FPLRC-WSRSRKSWP-----------GVQSFAGREELSAFLSQ--TRVLINLLP 199 (312)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEEE-EeCCCCCCC-----------CceeecccccHHHHHhc--CCEEEECCC
Confidence 48999999999986 677777665 67764 577554321 11111112689999997 799999999
Q ss_pred Cccc
Q 018445 83 GQAQ 86 (355)
Q Consensus 83 ~~~H 86 (355)
....
T Consensus 200 lt~~ 203 (312)
T PRK15469 200 NTPE 203 (312)
T ss_pred CCHH
Confidence 7654
No 251
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.42 E-value=0.17 Score=49.23 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=51.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc-----CC-------------ccccccCcch
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF-----AD-------------VECVWGDNGL 65 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~ 65 (355)
||||||+|.||.. ....+...+ ++| .++|++++.++...+..++.+ .+ +.. .+++
T Consensus 9 ~V~VIGaG~MG~g-IA~~la~aG--~~V-~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~ 81 (507)
T PRK08268 9 TVAVIGAGAMGAG-IAQVAAQAG--HTV-LLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL 81 (507)
T ss_pred EEEEECCCHHHHH-HHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence 7999999999985 555555543 676 478999999887533221110 01 111 2677
Q ss_pred hhhhcCCCccEEEEecCCcccHHHH
Q 018445 66 EQIIKEDSILGVAVVLAGQAQVDTS 90 (355)
Q Consensus 66 ~ell~~~~~D~V~I~tp~~~H~~~~ 90 (355)
+++ . +.|+|+-+.|........
T Consensus 82 ~~~-~--~aDlViEav~E~~~vK~~ 103 (507)
T PRK08268 82 ADL-A--DCDLVVEAIVERLDVKQA 103 (507)
T ss_pred HHh-C--CCCEEEEcCcccHHHHHH
Confidence 764 3 489999999998775554
No 252
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.36 E-value=0.019 Score=51.83 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|||+|+|+||+. .+..|...+ +....+.+.+.+.+...+ ++.. + .|+++|+.. .|+++|+.|-
T Consensus 164 ~vgilG~G~IG~~-ia~rL~~Fg---~~i~y~~r~~~~~~~~~~----~~~~----~--~d~~~~~~~--sD~ivv~~pL 227 (336)
T KOG0069|consen 164 TVGILGLGRIGKA-IAKRLKPFG---CVILYHSRTQLPPEEAYE----YYAE----F--VDIEELLAN--SDVIVVNCPL 227 (336)
T ss_pred EEEEecCcHHHHH-HHHhhhhcc---ceeeeecccCCchhhHHH----hccc----c--cCHHHHHhh--CCEEEEecCC
Confidence 8999999999986 777777654 555778887777766654 2111 1 689999997 7999999988
Q ss_pred cccHHH
Q 018445 84 QAQVDT 89 (355)
Q Consensus 84 ~~H~~~ 89 (355)
..+-..
T Consensus 228 t~~T~~ 233 (336)
T KOG0069|consen 228 TKETRH 233 (336)
T ss_pred CHHHHH
Confidence 654433
No 253
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.34 E-value=0.016 Score=53.75 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=43.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||||+|+||+. ....+...+ ++|.+ ||+.... . +....+ .+++++++. .|+|++++|
T Consensus 117 ktvGIIG~G~IG~~-vA~~l~a~G--~~V~~-~dp~~~~--~----------~~~~~~--~~L~ell~~--sDiI~lh~P 176 (378)
T PRK15438 117 RTVGIVGVGNVGRR-LQARLEALG--IKTLL-CDPPRAD--R----------GDEGDF--RSLDELVQE--ADILTFHTP 176 (378)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCC--CEEEE-ECCcccc--c----------cccccc--CCHHHHHhh--CCEEEEeCC
Confidence 48999999999986 677777765 67764 5764211 0 111112 789999987 799999988
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
-.
T Consensus 177 Lt 178 (378)
T PRK15438 177 LF 178 (378)
T ss_pred CC
Confidence 53
No 254
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.33 E-value=0.037 Score=50.12 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=46.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh---cCCccccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH---FADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|||+|||+|.+|.. .+..+...+- ..-+.++|+++++++..+...... .+... .+ .+++++ +.+ .|+|+|
T Consensus 1 mkI~IIGaG~VG~~-~a~~l~~~g~-~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~-i~-~~d~~~-l~~--aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGST-TAYALLLRGL-ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVR-IY-AGDYAD-CKG--ADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHH-HHHHHHHcCC-CCEEEEEECCchhhhhHHHHHHccccccCCeE-Ee-eCCHHH-hCC--CCEEEE
Confidence 58999999999975 5656665442 455678899998876432211111 01111 11 256765 444 899999
Q ss_pred ecCCc
Q 018445 80 VLAGQ 84 (355)
Q Consensus 80 ~tp~~ 84 (355)
+.+..
T Consensus 74 ta~~~ 78 (308)
T cd05292 74 TAGAN 78 (308)
T ss_pred ccCCC
Confidence 98764
No 255
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.33 E-value=0.063 Score=46.88 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=23.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
-||.|||+|..|.. .+..|.+.+ +.=..++|.+
T Consensus 33 ~~VliiG~GglGs~-va~~La~~G--vg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCA-ASQYLAAAG--VGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHH-HHHHHHHcC--CCEEEEEcCC
Confidence 48999999999985 788887654 3333455554
No 256
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.30 E-value=0.053 Score=48.91 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=23.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
||.|||+|..|.. .+..|...+ +.=+.+.|.+
T Consensus 1 kVlIVGaGGlG~E-iaKnLal~G--vg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCE-LLKNLVLTG--FGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHH-HHHHHHHhc--CCeEEEEcCC
Confidence 7899999999986 788887654 3444555653
No 257
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.30 E-value=0.062 Score=45.26 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=52.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC---------------------HHHHHHHHHHHhhhcCCccccc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS---------------------EESAKSAAEVARKHFADVECVW 60 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (355)
.-||.|||+|..|.. .+..|...+ +.=+.++|.+ ..+++.++++.++..|.+....
T Consensus 19 ~s~VlviG~gglGse-vak~L~~~G--Vg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGAGALGAE-IAKNLVLAG--IDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECCCHHHHH-HHHHHHHcC--CCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 358999999999986 788887654 3333455543 2344555555555556553222
Q ss_pred cC-------cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEEE
Q 018445 61 GD-------NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVIQ 102 (355)
Q Consensus 61 ~~-------~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl~ 102 (355)
.. ++.++++.. .|+|+.++.+. .+..+-..|.+.+++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~--~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~ 143 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQK--FTLVIATEENYERTAKVNDVCRKHHIPFIS 143 (198)
T ss_pred EecccccchhhHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 122334433 67777665442 333444555555555443
No 258
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=95.30 E-value=0.19 Score=45.91 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=100.9
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC-c----chhhhhcCCCccE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD-N----GLEQIIKEDSILG 76 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~ell~~~~~D~ 76 (355)
.-+|.++|.|.++.- .+..|.+..+ ++|+ |..+....++++.+ .. ++.....+ . .++... .+.|+
T Consensus 2 ~~~vlllgsg~v~~p-~~d~ls~~~d-v~vt-va~~~~~~~~~~~~---~~--~~~av~ldv~~~~~~L~~~v--~~~D~ 71 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRP-VADFLSRKKD-VNVT-VASRTLKDAEALVK---GI--NIKAVSLDVADEELALRKEV--KPLDL 71 (445)
T ss_pred CcceEEecCccccch-HHHHHhhcCC-ceEE-EehhhHHHHHHHhc---CC--CccceEEEccchHHHHHhhh--cccce
Confidence 348999999999986 8888888766 7874 55667777887765 22 22221110 1 233333 34899
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHH-----
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKL----- 151 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~----- 151 (355)
|+-.+|-..|.-+++.|+...+|+..- +--..|.++|-+.+..+ |...+--.- +.|....|-++
T Consensus 72 viSLlP~t~h~lVaK~~i~~~~~~vts---Syv~pe~~~L~~~~v~A------G~ti~~e~g--ldpGidhm~a~~ti~~ 140 (445)
T KOG0172|consen 72 VISLLPYTFHPLVAKGCIITKEDSVTS---SYVDPELEELEKAAVPA------GSTIMNEIG--LDPGIDHMPAMKTIDL 140 (445)
T ss_pred eeeeccchhhHHHHHHHHHhhcccccc---cccCHHHHhhhhhccCC------CceEecccc--cCcchhhhhhhccchH
Confidence 999999999999999999999998654 44456778888888885 665543333 88888776553
Q ss_pred HHH-hCCeeEEEEEEe
Q 018445 152 IAE-IGDMMSVQVIVE 166 (355)
Q Consensus 152 i~~-iG~i~~v~~~~~ 166 (355)
+.+ +|++.+...+++
T Consensus 141 vh~hgg~i~sf~sycG 156 (445)
T KOG0172|consen 141 VHEHGGKIKSFKSYCG 156 (445)
T ss_pred HHhhcceeeehhhhcC
Confidence 334 888888776654
No 259
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.28 E-value=0.06 Score=48.92 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=64.0
Q ss_pred ceEEEEecccccchhccchhhhcC-CeEEEEEEEeCC-HHHHHHHHHHHhhh--cCC-cc------------ccc-cCcc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRS-EESAKSAAEVARKH--FAD-VE------------CVW-GDNG 64 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~-~~~~~~~~~~~~~~--~~~-~~------------~~~-~~~~ 64 (355)
+||||=|.|+||+. .++.+...+ ++++||+|-|.. ++....+.+.=.-+ +++ +. ... ...+
T Consensus 2 ~ki~INGfGRIGR~-~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRN-FLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHH-HHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 49999999999986 777765442 349999999864 33322222100000 111 10 000 0022
Q ss_pred hhhh-hcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 65 LEQI-IKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 65 ~~el-l~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
++++ ..+.++|+|+=||......+.+...+++| |-|.+-=|
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap 123 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP 123 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC
Confidence 3333 22347999999999999999999999999 66776656
No 260
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.27 E-value=0.032 Score=49.42 Aligned_cols=117 Identities=15% Similarity=0.032 Sum_probs=70.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
++.|+|+|..++. .+.+|...+ +.-+.|++|++++++.+++. . +. ++.+-+.....|+|+.|||-
T Consensus 124 ~vlilGaGGaarA-i~~aL~~~g--~~~i~i~nR~~~~a~~la~~---~--~~-------~~~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 124 VVALRGSGGMAKA-VAAALRDAG--FTDGTIVARNEKTGKALAEL---Y--GY-------EWRPDLGGIEADILVNVTPI 188 (272)
T ss_pred eEEEECCcHHHHH-HHHHHHHCC--CCEEEEEeCCHHHHHHHHHH---h--CC-------cchhhcccccCCEEEECCcc
Confidence 6899999999875 677777654 44468899999999988762 2 11 11111223458999999997
Q ss_pred cccHH-------HHHHHHHcCCeEEEe---cCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHH
Q 018445 84 QAQVD-------TSLKLLKAGKHVIQE---KPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVEC 148 (355)
Q Consensus 84 ~~H~~-------~~~~al~~GkhVl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~ 148 (355)
..+.. +-...+..+ .++++ +|. --.+++.|++ .|..+.-|..+-......+.
T Consensus 189 Gm~~~~~~~~~pi~~~~l~~~-~~v~D~vY~P~------~T~ll~~A~~------~G~~~i~Gl~MLi~Qa~~~f 250 (272)
T PRK12550 189 GMAGGPEADKLAFPEAEIDAA-SVVFDVVALPA------ETPLIRYARA------RGKTVITGAEVIALQAVEQF 250 (272)
T ss_pred ccCCCCccccCCCCHHHcCCC-CEEEEeecCCc------cCHHHHHHHH------CcCeEeCCHHHHHHHHHHHH
Confidence 76521 112223322 23333 332 1345666777 37777666665555444433
No 261
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.24 E-value=0.053 Score=48.25 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=53.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEe---------------------CCHHHHHHHHHHHhhhcCCcccccc-
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWS---------------------RSEESAKSAAEVARKHFADVECVWG- 61 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d---------------------~~~~~~~~~~~~~~~~~~~~~~~~~- 61 (355)
||.|||+|..|.. .+..|...+ +.=..++| ....+++.+++..++.+|.+.....
T Consensus 1 kVLIvGaGGLGs~-vA~~La~aG--Vg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~ 77 (307)
T cd01486 1 KCLLLGAGTLGCN-VARNLLGWG--VRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIV 77 (307)
T ss_pred CEEEECCCHHHHH-HHHHHHHcC--CCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEee
Confidence 7899999999975 677776543 22222333 2334566666666666666543110
Q ss_pred ---------------------CcchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEE
Q 018445 62 ---------------------DNGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 62 ---------------------~~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl 101 (355)
.+++++++++ .|+|+.+|.+. .+.-+...|.+.+|.++
T Consensus 78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~--~DvV~d~tDn~esR~L~~~~~~~~~k~~I 137 (307)
T cd01486 78 LSIPMPGHPISESEVPSTLKDVKRLEELIKD--HDVIFLLTDSRESRWLPTLLSAAKNKLVI 137 (307)
T ss_pred eeccccccccccccccccccCHHHHHHHHhh--CCEEEECCCCHHHHHHHHHHHHHhCCcEE
Confidence 0124455554 67777777663 45556666666666443
No 262
>PRK07877 hypothetical protein; Provisional
Probab=95.21 E-value=0.06 Score=54.10 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=68.0
Q ss_pred ceEEEEecccccchhccchhhhcC--CeEEEE---------------EEEeCCHHHHHHHHHHHhhhcCCccccccC---
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEIS--DLVSLK---------------FIWSRSEESAKSAAEVARKHFADVECVWGD--- 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~--~~~~vv---------------ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~--- 62 (355)
-||+|||+| .|.. .+..|.+.+ +.+.|+ ...|....|++.++++..+..|.+......
T Consensus 108 ~~V~IvG~G-lGs~-~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGLS-VGHA-IAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEec-HHHH-HHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 589999998 7764 677777544 222221 234445567777777776676776543321
Q ss_pred --cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEEEec
Q 018445 63 --NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 63 --~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl~EK 104 (355)
++++++++. +|+|+-|+.+. ..+.+-..|.+.|++++..-
T Consensus 186 ~~~n~~~~l~~--~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 186 TEDNVDAFLDG--LDVVVEECDSLDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred CHHHHHHHhcC--CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 467888876 89999999884 56667788999999988875
No 263
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.38 Score=44.15 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAV 79 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I 79 (355)
|...||+||+|-||.. ..-++.+++ +.| +|+.|++++.+.+.+...+ ..++.. +.++||+++. +.|--+++
T Consensus 2 ~~~~iGviGLaVMG~N-LaLNi~~~G--~~V-avyNRt~~ktd~f~~~~~~-~k~i~~---~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 2 MKADIGVIGLAVMGSN-LALNIADHG--YTV-AVYNRTTEKTDEFLAERAK-GKNIVP---AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred CccceeeEehhhhhHH-HHHHHHhcC--ceE-EEEeCCHHHHHHHHHhCcc-CCCccc---cCcHHHHHHHhcCCceEEE
Confidence 4568999999999987 555666654 566 8999999999998763211 113322 2578888664 22333443
Q ss_pred ecCC----cccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 80 VLAG----QAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 80 ~tp~----~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
-.-. +.--+..+..|+.| .|+++-==+--.+.-++..++.++
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~g-DIiIDGGNs~y~DT~RR~~eL~~~ 119 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKG-DIIIDGGNSHYKDTIRRNKELSEK 119 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCC-CEEEeCCCcCCchHHHHHHHHHhc
Confidence 3222 22222222322222 355554434334444555555444
No 264
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.052 Score=51.48 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCc-eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 1 MAP-RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 1 m~~-rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
|.. ||.|||+|.+|.. ....|.+.+ .+| ..+|+++...+.. . .... .+ ..+.+.++. +.|+|+.
T Consensus 1 ~~~~~i~iiGlG~~G~s-lA~~l~~~G--~~V-~g~D~~~~~~~~~-~----~~~~---~~-~~~~~~~~~--~~dlvV~ 65 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKS-IARFLAQKG--VYV-IGVDKSLEALQSC-P----YIHE---RY-LENAEEFPE--QVDLVVR 65 (418)
T ss_pred CCCCeEEEEEECHHHHH-HHHHHHHCC--CEE-EEEeCCccccchh-H----HHhh---hh-cCCcHHHhc--CCCEEEE
Confidence 444 8999999999986 677777655 455 4578776543321 1 0000 01 023333333 3788888
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEe
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~E 103 (355)
+.+.....+.+.+|+++|.+|..+
T Consensus 66 s~gi~~~~~~l~~A~~~g~~vv~~ 89 (418)
T PRK00683 66 SPGIKKEHPWVQAAIASHIPVVTD 89 (418)
T ss_pred CCCCCCCcHHHHHHHHCCCcEEEH
Confidence 887778888999999999886655
No 265
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.12 E-value=0.15 Score=50.90 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=68.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC---CCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE---DSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~---~~~D~V~I 79 (355)
-+|-|+|+|++|+. ..+.|.+.+ .+++.+ |.|+++.+.+.+ . +....|++.+=.++|+. ++.|+|++
T Consensus 401 ~~vII~G~Gr~G~~-va~~L~~~g--~~vvvI-D~d~~~v~~~~~----~--g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQI-VGRLLLSSG--VKMTVL-DHDPDHIETLRK----F--GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHH-HHHHHHhCC--CCEEEE-ECCHHHHHHHHh----c--CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 47899999999985 667777654 566544 999999988764 2 45556655444555543 46899999
Q ss_pred ecCCcccHHHH-HHHHHcC--CeEEEecCCCCCHHHHHHHHHH
Q 018445 80 VLAGQAQVDTS-LKLLKAG--KHVIQEKPAAANISEIENALSR 119 (355)
Q Consensus 80 ~tp~~~H~~~~-~~al~~G--khVl~EKP~a~~~~e~~~l~~~ 119 (355)
+++++.--..+ ..+-+.. .++++ -+.+..++.+|.+.
T Consensus 471 ~~~d~~~n~~i~~~ar~~~p~~~iia---Ra~d~~~~~~L~~~ 510 (621)
T PRK03562 471 AIDDPQTSLQLVELVKEHFPHLQIIA---RARDVDHYIRLRQA 510 (621)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEE---EECCHHHHHHHHHC
Confidence 99886554444 3333333 34544 25677776666554
No 266
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.12 E-value=0.067 Score=50.16 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=24.4
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE 39 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~ 39 (355)
.-||.|||+|..|.. .+..|.+.+ +.=+.++|.+.
T Consensus 42 ~~~VlviG~GGlGs~-va~~La~~G--vg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSP-TLLYLAAAG--VGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHH-HHHHHHHcC--CCeEEEECCCE
Confidence 458999999999985 777777654 33335556543
No 267
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.11 E-value=0.019 Score=52.02 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=43.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|+||+. ..+.+...+ .+|.+ +|+..... .. +.. +.+++|+++. .|+|+++.|
T Consensus 146 ktvGIiG~G~IG~~-vA~~~~~fg--m~V~~-~d~~~~~~--------~~--~~~----~~~l~ell~~--sDvv~lh~P 205 (311)
T PRK08410 146 KKWGIIGLGTIGKR-VAKIAQAFG--AKVVY-YSTSGKNK--------NE--EYE----RVSLEELLKT--SDIISIHAP 205 (311)
T ss_pred CEEEEECCCHHHHH-HHHHHhhcC--CEEEE-ECCCcccc--------cc--Cce----eecHHHHhhc--CCEEEEeCC
Confidence 37999999999986 667666665 67765 57753210 01 221 2689999997 799999998
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
-.
T Consensus 206 lt 207 (311)
T PRK08410 206 LN 207 (311)
T ss_pred CC
Confidence 54
No 268
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.10 E-value=0.12 Score=46.76 Aligned_cols=73 Identities=21% Similarity=0.145 Sum_probs=42.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cC-Ccc-ccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FA-DVE-CVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~ell~~~~~D~V~I 79 (355)
+||+|||+|.+|.. ....+...+- .+| .++|+++++++......... .+ ... ....++++++ +++ .|+|++
T Consensus 3 ~KI~VIGaG~vG~~-ia~~la~~~~-~ev-~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~--aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGAT-LAHLLALKEL-GDV-VLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG--SDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCC-eEE-EEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC--CCEEEE
Confidence 59999999999975 5555555432 244 56699888775533211111 00 110 1111267766 454 799998
Q ss_pred ec
Q 018445 80 VL 81 (355)
Q Consensus 80 ~t 81 (355)
+.
T Consensus 77 ~~ 78 (307)
T PRK06223 77 TA 78 (307)
T ss_pred CC
Confidence 85
No 269
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.09 E-value=0.3 Score=48.24 Aligned_cols=124 Identities=12% Similarity=0.113 Sum_probs=77.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC---CCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE---DSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~---~~~D~V~I 79 (355)
=+|-|+|+|++|+. ..+.|.+.+ .++ -+.|.|+++.+.+.+ . +....+++.+-++.+++ ++.|+|++
T Consensus 418 ~hiiI~G~G~~G~~-la~~L~~~g--~~v-vvId~d~~~~~~~~~----~--g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSL-LGEKLLAAG--IPL-VVIETSRTRVDELRE----R--GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHH-HHHHHHHCC--CCE-EEEECCHHHHHHHHH----C--CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 36899999999985 778887655 355 345999999888765 2 44444443333445542 56899999
Q ss_pred ecCCcccHHHH-HHHHHc--CCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHh
Q 018445 80 VLAGQAQVDTS-LKLLKA--GKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEI 155 (355)
Q Consensus 80 ~tp~~~H~~~~-~~al~~--GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~i 155 (355)
+++++.....+ ..+.+. .++++.= +.+.++.+.+ ++. |....+ +|.....+++.+.+
T Consensus 488 ~~~~~~~~~~iv~~~~~~~~~~~iiar---~~~~~~~~~l----~~~------Gad~vv------~p~~~~a~~i~~~l 547 (558)
T PRK10669 488 TIPNGYEAGEIVASAREKRPDIEIIAR---AHYDDEVAYI----TER------GANQVV------MGEREIARTMLELL 547 (558)
T ss_pred EcCChHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHH----HHc------CCCEEE------ChHHHHHHHHHHHh
Confidence 99987665433 333332 2455542 4555555554 232 444444 77777777776643
No 270
>PRK04148 hypothetical protein; Provisional
Probab=95.08 E-value=0.18 Score=39.33 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=59.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhc-----CCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIK-----EDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~-----~~~~D~V 77 (355)
.||..||+| .|.. +...|.+.+ .+|+|+ |.+++..+.+.+. ..... .+++++ -.+.|++
T Consensus 18 ~kileIG~G-fG~~-vA~~L~~~G--~~ViaI-Di~~~aV~~a~~~------~~~~v-----~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 18 KKIVELGIG-FYFK-VAKKLKESG--FDVIVI-DINEKAVEKAKKL------GLNAF-----VDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred CEEEEEEec-CCHH-HHHHHHHCC--CEEEEE-ECCHHHHHHHHHh------CCeEE-----ECcCCCCCHHHHhcCCEE
Confidence 579999999 6653 566677654 688877 9999988777652 22111 122222 1348999
Q ss_pred EEecCC-cccHHHHHHHHHcCCeEEEecCCCCC
Q 018445 78 AVVLAG-QAQVDTSLKLLKAGKHVIQEKPAAAN 109 (355)
Q Consensus 78 ~I~tp~-~~H~~~~~~al~~GkhVl~EKP~a~~ 109 (355)
+=.-|+ ..|..+..-|-+-|..+++ ||++-+
T Consensus 82 ysirpp~el~~~~~~la~~~~~~~~i-~~l~~e 113 (134)
T PRK04148 82 YSIRPPRDLQPFILELAKKINVPLII-KPLSGE 113 (134)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCEEE-EcCCCC
Confidence 966665 5777777777777777666 677544
No 271
>PRK14967 putative methyltransferase; Provisional
Probab=95.08 E-value=0.97 Score=38.76 Aligned_cols=72 Identities=17% Similarity=0.010 Sum_probs=42.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
+|.-+|||. |. ....+...+. .+++++ |.++...+.+.+........+. +...|+.+.+.+...|+|+...|
T Consensus 39 ~vLDlGcG~-G~--~~~~la~~~~-~~v~~v-D~s~~~l~~a~~n~~~~~~~~~--~~~~d~~~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 39 RVLDLCTGS-GA--LAVAAAAAGA-GSVTAV-DISRRAVRSARLNALLAGVDVD--VRRGDWARAVEFRPFDVVVSNPP 110 (223)
T ss_pred eEEEecCCH-HH--HHHHHHHcCC-CeEEEE-ECCHHHHHHHHHHHHHhCCeeE--EEECchhhhccCCCeeEEEECCC
Confidence 688899997 53 2333444332 366555 9999888766654433321222 22256666666677998876543
No 272
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.07 E-value=0.1 Score=43.02 Aligned_cols=76 Identities=21% Similarity=0.141 Sum_probs=45.8
Q ss_pred eEEEEecccccchhccc-hhh---hcCCeEEEEEEEeCCHHHHHHHHHHHh----hhcCCccccccCcchhhhhcCCCcc
Q 018445 4 RIAILGAGIFVKTQYIP-RLA---EISDLVSLKFIWSRSEESAKSAAEVAR----KHFADVECVWGDNGLEQIIKEDSIL 75 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~-~l~---~~~~~~~vvai~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ell~~~~~D 75 (355)
||.|||.|+.-...-+- -+. .++ ..-+.++|+|++|++.....++ +..+.... ..++|.+|.|++ .|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~--~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v-~~ttd~~eAl~g--AD 75 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELS--GSEIVLMDIDEERLEIVERLARRMVEEAGADLKV-EATTDRREALEG--AD 75 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTST--EEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEE-EEESSHHHHHTT--ES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCC--CcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEE-EEeCCHHHHhCC--CC
Confidence 79999999854321222 222 233 3455889999999986544332 33344432 225899999997 89
Q ss_pred EEEEecCCc
Q 018445 76 GVAVVLAGQ 84 (355)
Q Consensus 76 ~V~I~tp~~ 84 (355)
.|++.....
T Consensus 76 fVi~~irvG 84 (183)
T PF02056_consen 76 FVINQIRVG 84 (183)
T ss_dssp EEEE---TT
T ss_pred EEEEEeeec
Confidence 999987665
No 273
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.99 E-value=0.19 Score=46.40 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=52.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC-c--chhhhhc---CCCccEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD-N--GLEQIIK---EDSILGV 77 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~ell~---~~~~D~V 77 (355)
+|.|+|+|.+|.- .+..++..+- .+| -+.|++++|++.+.+. . +....... . ..+.+++ ...+|+|
T Consensus 171 ~V~V~GaGpIGLl-a~~~a~~~Ga-~~V-iv~d~~~~Rl~~A~~~---~--g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 171 TVVVVGAGPIGLL-AIALAKLLGA-SVV-IVVDRSPERLELAKEA---G--GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred EEEEECCCHHHHH-HHHHHHHcCC-ceE-EEeCCCHHHHHHHHHh---C--CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 6899999999974 4555555543 455 4459999999988762 1 21111100 1 1122222 2368999
Q ss_pred EEecCCcccHHHHHHHHHcC
Q 018445 78 AVVLAGQAQVDTSLKLLKAG 97 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~G 97 (355)
+-|+........+.++++.|
T Consensus 243 ie~~G~~~~~~~ai~~~r~g 262 (350)
T COG1063 243 IEAVGSPPALDQALEALRPG 262 (350)
T ss_pred EECCCCHHHHHHHHHHhcCC
Confidence 99999655555666666555
No 274
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=94.98 E-value=0.16 Score=48.73 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=58.8
Q ss_pred eEEEEecccccchhccchhhhcCC-eEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc-CcchhhhhcCCCccEEEEec
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISD-LVSLKFIWSRSEESAKSAAEVARKHFADVECVWG-DNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~-~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ell~~~~~D~V~I~t 81 (355)
|+.|||+|..|.. ....+.+++. +++++|+.|.++.. .. .++ .++ .+++.++++..++|-|+|+.
T Consensus 145 rVLIvGaG~~g~~-l~~~L~~~~~~g~~vVGfiDdd~~~---------g~--~Vp-vlG~~~dL~~~v~~~~IdeViIAi 211 (463)
T PRK10124 145 MVAVAGDLPAGQM-LLESFRNEPWLGFEVVGVYHDPKPG---------GV--SND-WAGNLQQLVEDAKAGKIHNVYIAM 211 (463)
T ss_pred cEEEEECCHHHHH-HHHHHhcCccCCeEEEEEEeCCccc---------cC--CCC-cCCCHHHHHHHHHhCCCCEEEEeC
Confidence 7999999999975 6778876542 48999999976511 01 221 111 14577788888999999999
Q ss_pred CCcccHH---HHHHHHHcCCeEEE
Q 018445 82 AGQAQVD---TSLKLLKAGKHVIQ 102 (355)
Q Consensus 82 p~~~H~~---~~~~al~~GkhVl~ 102 (355)
|...+.+ ++..|-+.|++|.+
T Consensus 212 p~~~~~~l~ell~~~~~~~v~V~i 235 (463)
T PRK10124 212 SMCDGARVKKLVRQLADTTCSVLL 235 (463)
T ss_pred CCcchHHHHHHHHHHHHcCCeEEE
Confidence 9876643 44456666776654
No 275
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.98 E-value=0.11 Score=43.74 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=25.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
..||+|||+|.+|.. .+..|.+.+ +.=+.++|.+
T Consensus 21 ~~~V~IvG~GglGs~-ia~~La~~G--vg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSN-VAINLARAG--IGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHH-HHHHHHHcC--CCEEEEECCC
Confidence 358999999999986 777777654 5444677887
No 276
>PRK07411 hypothetical protein; Validated
Probab=94.98 E-value=0.069 Score=50.04 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=54.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccccC-
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVWGD- 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~- 62 (355)
-||.|||+|..|.. .+..|.+.+ +.=..++|.|. .+++.++++.++..|.+......
T Consensus 39 ~~VlivG~GGlG~~-va~~La~~G--vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 39 ASVLCIGTGGLGSP-LLLYLAAAG--IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred CcEEEECCCHHHHH-HHHHHHHcC--CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 58999999999975 777777654 33345555532 44555555555555555322211
Q ss_pred ----cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCe
Q 018445 63 ----NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKH 99 (355)
Q Consensus 63 ----~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~Gkh 99 (355)
.+..+++.+ .|+|+.|+-+. .+.-+-..|.+.+++
T Consensus 116 ~~~~~~~~~~~~~--~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 116 RLSSENALDILAP--YDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ccCHHhHHHHHhC--CCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 123445554 77777776664 444455566666655
No 277
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.98 E-value=0.056 Score=47.99 Aligned_cols=78 Identities=22% Similarity=0.125 Sum_probs=53.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
++.|+|+|..++. .+..|...+ +.=+.|+.|+.++++++++.+.+.++.+.. .++.++-...+.|+++.+||.
T Consensus 128 ~vlilGAGGAarA-v~~aL~~~g--~~~i~V~NRt~~ra~~La~~~~~~~~~~~~----~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 128 RVLILGAGGAARA-VAFALAEAG--AKRITVVNRTRERAEELADLFGELGAAVEA----AALADLEGLEEADLLINATPV 200 (283)
T ss_pred EEEEECCcHHHHH-HHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhhhccccccc----ccccccccccccCEEEECCCC
Confidence 6999999999975 777888765 333478899999999999866444321111 223333221158999999998
Q ss_pred cccHH
Q 018445 84 QAQVD 88 (355)
Q Consensus 84 ~~H~~ 88 (355)
..+..
T Consensus 201 Gm~~~ 205 (283)
T COG0169 201 GMAGP 205 (283)
T ss_pred CCCCC
Confidence 87653
No 278
>PRK14852 hypothetical protein; Provisional
Probab=94.96 E-value=0.098 Score=53.86 Aligned_cols=98 Identities=15% Similarity=0.009 Sum_probs=65.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEe-------------------CCHHHHHHHHHHHhhhcCCcccccc--
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWS-------------------RSEESAKSAAEVARKHFADVECVWG-- 61 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d-------------------~~~~~~~~~~~~~~~~~~~~~~~~~-- 61 (355)
-||+|||||+.|.. ++..|...+- .=..++| ....|++.++++.++..|.+.....
T Consensus 333 srVlVvGlGGlGs~-ia~~LAraGV--G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 333 SRVAIAGLGGVGGI-HLMTLARTGI--GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred CcEEEECCcHHHHH-HHHHHHHcCC--CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 48999999999975 7878776542 1112223 3445677777776666666654321
Q ss_pred ---CcchhhhhcCCCccEEEEecCCc---ccHHHHHHHHHcCCeEEEecC
Q 018445 62 ---DNGLEQIIKEDSILGVAVVLAGQ---AQVDTSLKLLKAGKHVIQEKP 105 (355)
Q Consensus 62 ---~~~~~ell~~~~~D~V~I~tp~~---~H~~~~~~al~~GkhVl~EKP 105 (355)
.++.+++++. +|+|+-|+.+. ....+...|.+.|++++..-+
T Consensus 410 ~I~~en~~~fl~~--~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 410 GVAAETIDAFLKD--VDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred CCCHHHHHHHhhC--CCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 1467777765 89999988763 235667789999998776544
No 279
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.072 Score=49.80 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=53.6
Q ss_pred CCceEEEEecccccchhccchhh----hcCCeEEEEEEEeCCHHHHHHHHHHH----hhhcCCccccccCcchhhhhcCC
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLA----EISDLVSLKFIWSRSEESAKSAAEVA----RKHFADVECVWGDNGLEQIIKED 72 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~----~~~~~~~vvai~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ell~~~ 72 (355)
|++||.|||.|+......+-.+. +++. .+ ++++|.++++.+.....+ ++.++.+.. ..++|.++.|++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~-~e-l~L~Did~~r~~~i~~~~~~~v~~~g~~~kv-~~ttd~~eAl~g- 77 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPV-RE-LALYDIDEERLKIIAILAKKLVEEAGAPVKV-EATTDRREALEG- 77 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCc-ce-EEEEeCCHHHHHHHHHHHHHHHHhhCCCeEE-EEecCHHHHhcC-
Confidence 35799999999865432232222 3443 34 489999999998654433 334444432 235899999998
Q ss_pred CccEEEEecCCcccH
Q 018445 73 SILGVAVVLAGQAQV 87 (355)
Q Consensus 73 ~~D~V~I~tp~~~H~ 87 (355)
.|.|+.+-......
T Consensus 78 -AdfVi~~~rvG~l~ 91 (442)
T COG1486 78 -ADFVITQIRVGGLE 91 (442)
T ss_pred -CCEEEEEEeeCCcc
Confidence 88899886665443
No 280
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.95 E-value=0.029 Score=51.46 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=56.5
Q ss_pred ceEEEEec-ccccchhccchhhh--cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhh-hhcCCCccEEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAE--ISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQ-IIKEDSILGVA 78 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~--~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-ll~~~~~D~V~ 78 (355)
+||+|||+ |..|.. .++.|.+ ++. ++|+++..... ..+.+. . .+....+ .+.++ .+ .++|+|+
T Consensus 2 ~~V~IvGAtG~vG~~-l~~lL~~~~hp~-~~l~~l~s~~~-~g~~l~-----~-~g~~i~v--~d~~~~~~--~~vDvVf 68 (334)
T PRK14874 2 YNVAVVGATGAVGRE-MLNILEERNFPV-DKLRLLASARS-AGKELS-----F-KGKELKV--EDLTTFDF--SGVDIAL 68 (334)
T ss_pred CEEEEECCCCHHHHH-HHHHHHhCCCCc-ceEEEEEcccc-CCCeee-----e-CCceeEE--eeCCHHHH--cCCCEEE
Confidence 69999995 556664 7888876 565 79999866532 222221 0 1111121 23322 22 3599999
Q ss_pred EecCCcccHHHHHHHHHcCCeEE
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl 101 (355)
.|+|+....+++.+++++|.-|+
T Consensus 69 ~A~g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred ECCChHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999998443
No 281
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.93 E-value=0.071 Score=50.01 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=51.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|+|+|.+|.. .+..++..+ .+|+ ++|+++.+++.+.. . ++.. .+.++.+.. .|+|+.+|.+
T Consensus 204 tVvViG~G~IG~~-va~~ak~~G--a~Vi-V~d~d~~R~~~A~~----~--G~~~----~~~~e~v~~--aDVVI~atG~ 267 (413)
T cd00401 204 VAVVAGYGDVGKG-CAQSLRGQG--ARVI-VTEVDPICALQAAM----E--GYEV----MTMEEAVKE--GDIFVTTTGN 267 (413)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEEE-EEECChhhHHHHHh----c--CCEE----ccHHHHHcC--CCEEEECCCC
Confidence 7999999999985 666666655 5654 48999998876654 2 3321 345677654 7999888765
Q ss_pred cccHHHH-HHHHHcCC
Q 018445 84 QAQVDTS-LKLLKAGK 98 (355)
Q Consensus 84 ~~H~~~~-~~al~~Gk 98 (355)
..=.... ..+++.|.
T Consensus 268 ~~~i~~~~l~~mk~Gg 283 (413)
T cd00401 268 KDIITGEHFEQMKDGA 283 (413)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 4322222 34445553
No 282
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.92 E-value=0.02 Score=52.49 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=55.3
Q ss_pred eEEEEe-cccccchhccchhhh--cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchh-hhhcCCCccEEEE
Q 018445 4 RIAILG-AGIFVKTQYIPRLAE--ISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLE-QIIKEDSILGVAV 79 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~--~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ell~~~~~D~V~I 79 (355)
||+||| .|..|.. .++.|.+ ++. ++++.++... ...+.+. +.+....+ .+++ +.+ .++|+|+.
T Consensus 1 ~VaIvGAtG~vG~e-Li~lL~~~~hp~-~~l~~~as~~-~~g~~~~------~~~~~~~~--~~~~~~~~--~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQE-MLKILEERNFPI-DKLVLLASDR-SAGRKVT------FKGKELEV--NEAKIESF--EGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHH-HHHHHHhCCCCh-hhEEEEeccc-cCCCeee------eCCeeEEE--EeCChHHh--cCCCEEEE
Confidence 689999 6777875 7888876 565 7776665542 2222221 11211121 2222 223 35999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEE
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl 101 (355)
|+|+....+++.+++++|..|+
T Consensus 68 a~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 68 SAGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCCHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999998544
No 283
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.92 E-value=0.12 Score=45.93 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=28.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHH
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEES 41 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~ 41 (355)
.-||.|||+|..|.. .+.+|...+ +.=+.++|.+.-.
T Consensus 19 ~s~VLIvG~gGLG~E-iaKnLalaG--Vg~itI~D~d~ve 55 (286)
T cd01491 19 KSNVLISGLGGLGVE-IAKNLILAG--VKSVTLHDTKPCS 55 (286)
T ss_pred cCcEEEEcCCHHHHH-HHHHHHHcC--CCeEEEEcCCccc
Confidence 358999999999986 788887654 5666778876533
No 284
>PRK06091 membrane protein FdrA; Validated
Probab=94.89 E-value=0.35 Score=46.72 Aligned_cols=70 Identities=7% Similarity=0.045 Sum_probs=54.8
Q ss_pred CcchhhhhcC-CCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecc
Q 018445 62 DNGLEQIIKE-DSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENY 139 (355)
Q Consensus 62 ~~~~~ell~~-~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~ 139 (355)
+.++.+++++ +++|+++|++|...=.+.+++|+++|++|++=-= ....+.-++|.++|+++ |+. ++|-|.
T Consensus 105 ~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~-gfg~~~E~~L~e~Ar~~------Glr-vmGPNC 175 (555)
T PRK06091 105 VRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLNVMMFSD-NVTLEDEIRLKTRAREK------GLL-VMGPDC 175 (555)
T ss_pred cccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcC-CCCHHHHHHHHHHHHHc------CCE-EECCCC
Confidence 3789998865 6789999999999999999999999998776322 23566778999999994 644 355554
No 285
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=94.88 E-value=0.067 Score=51.36 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=57.8
Q ss_pred eEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|+.|||+|..+.. ....+.+++ .+.+++|++|.++..... ...+.+. ++.+++.+.+.+.++|.|+|+.|
T Consensus 127 rvlIiGag~~~~~-l~~~l~~~~~~g~~vvGfidd~~~~~~~-------~i~g~pV-lg~~~l~~~i~~~~id~ViIAip 197 (456)
T TIGR03022 127 PAVIIGAGQNAAI-LYRALQSNPQLGLRPLAVVDTDPAASGR-------LLTGLPV-VGADDALRLYARTRYAYVIVAMP 197 (456)
T ss_pred eEEEEeCCHHHHH-HHHHHhhCccCCcEEEEEEeCCcccccc-------ccCCCcc-cChhHHHHHHHhCCCCEEEEecC
Confidence 6999999998875 677776543 248999999976543211 1123332 22245666777788999999999
Q ss_pred Cccc---HHHHHHHHHcCC-eEEE
Q 018445 83 GQAQ---VDTSLKLLKAGK-HVIQ 102 (355)
Q Consensus 83 ~~~H---~~~~~~al~~Gk-hVl~ 102 (355)
.... .+++..+-+.|. +|.+
T Consensus 198 ~~~~~~~~~ll~~l~~~~v~~V~~ 221 (456)
T TIGR03022 198 GTQAEDMARLVRKLGALHFRNVLI 221 (456)
T ss_pred CccHHHHHHHHHHHHhCCCeEEEE
Confidence 6543 344445555565 5544
No 286
>PRK14851 hypothetical protein; Provisional
Probab=94.88 E-value=0.11 Score=52.04 Aligned_cols=100 Identities=14% Similarity=-0.030 Sum_probs=65.2
Q ss_pred ceEEEEecccccchhccchhhhcCCe-EEEE----------------EEEeCCHHHHHHHHHHHhhhcCCcccccc----
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDL-VSLK----------------FIWSRSEESAKSAAEVARKHFADVECVWG---- 61 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~-~~vv----------------ai~d~~~~~~~~~~~~~~~~~~~~~~~~~---- 61 (355)
-||+|||+|..|.. ++..|.+.+-+ +.|+ -..|....|++.++++..+..|.+.....
T Consensus 44 ~~VlIvG~GGlGs~-va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i 122 (679)
T PRK14851 44 AKVAIPGMGGVGGV-HLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGI 122 (679)
T ss_pred CeEEEECcCHHHHH-HHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 48999999999975 78888764421 1111 12333445667777766666666543221
Q ss_pred -CcchhhhhcCCCccEEEEecCCc---ccHHHHHHHHHcCCeEEEecC
Q 018445 62 -DNGLEQIIKEDSILGVAVVLAGQ---AQVDTSLKLLKAGKHVIQEKP 105 (355)
Q Consensus 62 -~~~~~ell~~~~~D~V~I~tp~~---~H~~~~~~al~~GkhVl~EKP 105 (355)
.++.+++++. +|+|+-|+.+. ....+...|.+.|+++++--|
T Consensus 123 ~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~ 168 (679)
T PRK14851 123 NADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGP 168 (679)
T ss_pred ChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeec
Confidence 1356777875 89999888763 244677789999999887753
No 287
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.86 E-value=0.069 Score=51.19 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC-cchhhhhc--CCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD-NGLEQIIK--EDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ell~--~~~~D~V~I 79 (355)
|+|.|+|+|.+|.. ....|.+.+ .+++ +.|+++++.+.+.+. . ++...++. ++.+.+.+ -.++|+|++
T Consensus 1 m~viIiG~G~ig~~-~a~~L~~~g--~~v~-vid~~~~~~~~~~~~---~--~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYT-LAENLSGEN--NDVT-VIDTDEERLRRLQDR---L--DVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CcEE-EEECCHHHHHHHHhh---c--CEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 58999999999985 677776643 5665 569999988877541 1 22222221 22222221 135999999
Q ss_pred ecCCcccHHHHHHHH-Hc-C-CeEEEe
Q 018445 80 VLAGQAQVDTSLKLL-KA-G-KHVIQE 103 (355)
Q Consensus 80 ~tp~~~H~~~~~~al-~~-G-khVl~E 103 (355)
+++....-..+...+ +. + +++++.
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEEE
Confidence 999865554443333 32 3 455553
No 288
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.83 E-value=0.07 Score=50.20 Aligned_cols=64 Identities=14% Similarity=0.017 Sum_probs=45.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|+|+|.+|.. .+..++..+ .+ |-++|+++.++..+.. . +.. . .+++++++. .|+|+.+|.+
T Consensus 214 ~VlViG~G~IG~~-vA~~lr~~G--a~-ViV~d~dp~ra~~A~~----~--G~~--v--~~l~eal~~--aDVVI~aTG~ 277 (425)
T PRK05476 214 VVVVAGYGDVGKG-CAQRLRGLG--AR-VIVTEVDPICALQAAM----D--GFR--V--MTMEEAAEL--GDIFVTATGN 277 (425)
T ss_pred EEEEECCCHHHHH-HHHHHHhCC--CE-EEEEcCCchhhHHHHh----c--CCE--e--cCHHHHHhC--CCEEEECCCC
Confidence 7999999999985 677777665 56 4678999988755443 1 332 1 467888764 8999888754
No 289
>PLN02928 oxidoreductase family protein
Probab=94.82 E-value=0.034 Score=51.19 Aligned_cols=73 Identities=18% Similarity=0.063 Sum_probs=44.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHH-----HHHhhhcCCccccccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAA-----EVARKHFADVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V 77 (355)
-+|||||+|.||+. ....+...+ .+|++ +|++........ ........... . +.+++|++.. .|+|
T Consensus 160 ktvGIiG~G~IG~~-vA~~l~afG--~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~L~ell~~--aDiV 230 (347)
T PLN02928 160 KTVFILGYGAIGIE-LAKRLRPFG--VKLLA-TRRSWTSEPEDGLLIPNGDVDDLVDEKG-G--HEDIYEFAGE--ADIV 230 (347)
T ss_pred CEEEEECCCHHHHH-HHHHHhhCC--CEEEE-ECCCCChhhhhhhccccccccccccccC-c--ccCHHHHHhh--CCEE
Confidence 38999999999985 677777665 67765 577632211110 00000000001 1 2789999997 7999
Q ss_pred EEecCCc
Q 018445 78 AVVLAGQ 84 (355)
Q Consensus 78 ~I~tp~~ 84 (355)
++++|..
T Consensus 231 vl~lPlt 237 (347)
T PLN02928 231 VLCCTLT 237 (347)
T ss_pred EECCCCC
Confidence 9999854
No 290
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=94.81 E-value=0.17 Score=44.16 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=81.5
Q ss_pred eEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|+.+-| .|..|. .|...+.+. + ..+|+=..+..-- ....+.+.+ ++.+|.++..++|+.+|+.|
T Consensus 10 kvivqGitg~~gt-fh~~~~l~y-G-t~~V~GvtPgkgG---------~~~~g~PVf---~tV~EA~~~~~a~~svI~Vp 74 (293)
T COG0074 10 KVIVQGITGKQGT-FHTEQMLAY-G-TKIVGGVTPGKGG---------QTILGLPVF---NTVEEAVKETGANASVIFVP 74 (293)
T ss_pred eEEEeccccccch-HHHHHHHHh-C-CceeecccCCCCc---------eEEcCccHH---HHHHHHHHhhCCCEEEEecC
Confidence 677777 566776 488888776 3 5677655554322 112245543 89999999999999999999
Q ss_pred CcccHHHHHHHHHcCCe---EEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecc
Q 018445 83 GQAQVDTSLKLLKAGKH---VIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENY 139 (355)
Q Consensus 83 ~~~H~~~~~~al~~Gkh---Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~ 139 (355)
+..-++-+.+|+++|.. ++.| ...+.+..++.+.+++ ++ ..++|-|.
T Consensus 75 ~~~aadai~EAida~i~liv~ITE---gIP~~D~~~~~~~a~~------~g-~~iiGPnc 124 (293)
T COG0074 75 PPFAADAILEAIDAGIKLVVIITE---GIPVLDMLELKRYARE------KG-TRLIGPNC 124 (293)
T ss_pred cHHHHHHHHHHHhCCCcEEEEEeC---CCCHHHHHHHHHHHHh------cC-CEEECCCC
Confidence 99999999999999955 4455 6788888899999998 35 44455543
No 291
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.80 E-value=0.091 Score=49.49 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=55.1
Q ss_pred eEEEEecccccchhccchhhhcCCeE-----EEEEEEeCCH-------------------HHHHHHHHHHhhhcCCcccc
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLV-----SLKFIWSRSE-------------------ESAKSAAEVARKHFADVECV 59 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~-----~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~ 59 (355)
||.|||+|.+|.. .+..|...+ + .-+.|+|.|. .+++.+++..++..|.+...
T Consensus 1 kVlvVGaGGlGcE-~lKnLal~G--v~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCE-LLKNFALMG--VGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHH-HHHHHHHcC--CCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 6899999999987 888887654 3 3335556533 34555555555566665433
Q ss_pred ccCcch----hhhhcC---CCccEEEEecCC-cccHHHHHHHHHcCCeEE
Q 018445 60 WGDNGL----EQIIKE---DSILGVAVVLAG-QAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 60 ~~~~~~----~ell~~---~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl 101 (355)
.....+ ++++.+ .+.|+|+.|+-+ ..+..+-..|...+++++
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli 127 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLL 127 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 221111 111111 237877777655 355566677777766533
No 292
>PLN02602 lactate dehydrogenase
Probab=94.78 E-value=0.059 Score=49.52 Aligned_cols=75 Identities=5% Similarity=-0.015 Sum_probs=45.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCCccccccCcchhhhhcCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH--FADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
.||+|||+|.+|.. .+..|...+- +.=+.++|+++++++..+-..... +.+.......++|++ +++ .|+|+|+
T Consensus 38 ~KI~IIGaG~VG~~-~a~~l~~~~l-~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d--aDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMA-IAQTILTQDL-ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG--SDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCC-CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC--CCEEEEC
Confidence 59999999999975 5555554332 444578899888776654322221 111112222257777 554 7999998
Q ss_pred cC
Q 018445 81 LA 82 (355)
Q Consensus 81 tp 82 (355)
.-
T Consensus 113 AG 114 (350)
T PLN02602 113 AG 114 (350)
T ss_pred CC
Confidence 43
No 293
>KOG0563 consensus Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.77 E-value=0.51 Score=44.00 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=37.9
Q ss_pred EEEEecCCcccHHHHHHHHHcC------CeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAG------KHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~G------khVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
+.+++.||+.-..+++.+=+.. -.|++|||++.+.+.+.+|.....+
T Consensus 128 iFYlalPPsvy~~V~~~I~~~~~~~~GwtRvIVEKPFG~d~~Sa~~L~~~l~~ 180 (499)
T KOG0563|consen 128 IFYLALPPSVYVDVAKNIKKSCSSVNGWTRVIVEKPFGRDLESAQELSSELGK 180 (499)
T ss_pred EEEEecChHHHHHHHHHHhhhccCCCCceEEEEecCCCCchHhHHHHHHHHHh
Confidence 8899999999888887754333 2499999999999999998875433
No 294
>PRK06153 hypothetical protein; Provisional
Probab=94.76 E-value=0.12 Score=47.55 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=24.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
.||+|||||+.|.. .+..|.+.+- -+| .++|.|
T Consensus 177 ~~VaIVG~GG~GS~-Va~~LAR~GV-geI-~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSY-ILDLVAKTPV-REI-HLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHH-HHHHHHHcCC-CEE-EEECCC
Confidence 48999999999975 7888887763 233 455665
No 295
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.74 E-value=0.034 Score=51.62 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.+|+. ....+...+ ++|. +||+..... + +. ..+ .+++|+++. .|+|.+++|
T Consensus 117 ktvGIIG~G~IG~~-va~~l~a~G--~~V~-~~Dp~~~~~----~-------~~-~~~--~~l~ell~~--aDiV~lh~P 176 (381)
T PRK00257 117 RTYGVVGAGHVGGR-LVRVLRGLG--WKVL-VCDPPRQEA----E-------GD-GDF--VSLERILEE--CDVISLHTP 176 (381)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEE-EECCccccc----c-------cC-ccc--cCHHHHHhh--CCEEEEeCc
Confidence 47999999999986 677777665 6775 457643211 0 11 112 689999987 899999999
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
..
T Consensus 177 lt 178 (381)
T PRK00257 177 LT 178 (381)
T ss_pred CC
Confidence 63
No 296
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.73 E-value=0.075 Score=47.66 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=68.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCH---HHHHHHHHHHhhhcCCcccc-ccCcc---hhhhhcCCCccE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE---ESAKSAAEVARKHFADVECV-WGDNG---LEQIIKEDSILG 76 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~---~~ell~~~~~D~ 76 (355)
++.|+|+|++|+. .+..|...+ ++-+.|++|++ ++++.+++...+.++..... ...++ ++++++ .+|+
T Consensus 128 ~vlI~GAGGagrA-ia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--~~Di 202 (289)
T PRK12548 128 KLTVIGAGGAATA-IQVQCALDG--AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--SSDI 202 (289)
T ss_pred EEEEECCcHHHHH-HHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--cCCE
Confidence 6889999998874 566666554 55457789986 67777666443333222111 00122 233333 3799
Q ss_pred EEEecCCcccHHH----H--HHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHH
Q 018445 77 VAVVLAGQAQVDT----S--LKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFV 146 (355)
Q Consensus 77 V~I~tp~~~H~~~----~--~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~ 146 (355)
++.+||...+... + ...+..+ .++++- .-++.+ -.|++.|++ .|..+.-|..+-...+..
T Consensus 203 lINaTp~Gm~~~~~~~~~~~~~~l~~~-~~v~D~--vY~P~~-T~ll~~A~~------~G~~~~~G~~ML~~Qa~~ 268 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIKDTSVFRKD-LVVADT--VYNPKK-TKLLEDAEA------AGCKTVGGLGMLLWQGAE 268 (289)
T ss_pred EEEeCCCCCCCCCCCCCCCcHHhcCCC-CEEEEe--cCCCCC-CHHHHHHHH------CCCeeeCcHHHHHHHHHH
Confidence 9999998775311 1 1223322 233331 111122 345666666 366666665554444433
No 297
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.73 E-value=0.086 Score=49.32 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=44.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|+|+|.+|.. .+..++..+ .+| -++|+++.++..+.. . +... .+.++++.. .|+|+.+|.+
T Consensus 197 ~VvViG~G~IG~~-vA~~ak~~G--a~V-iV~d~dp~r~~~A~~----~--G~~v----~~leeal~~--aDVVItaTG~ 260 (406)
T TIGR00936 197 TVVVAGYGWCGKG-IAMRARGMG--ARV-IVTEVDPIRALEAAM----D--GFRV----MTMEEAAKI--GDIFITATGN 260 (406)
T ss_pred EEEEECCCHHHHH-HHHHHhhCc--CEE-EEEeCChhhHHHHHh----c--CCEe----CCHHHHHhc--CCEEEECCCC
Confidence 8999999999986 677777654 575 558989887654432 2 3321 456777764 7888877754
No 298
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.71 E-value=0.14 Score=49.01 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=58.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-HHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-ESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-+|.|+|.|.+|.. ....|.+.+ .+|+ ++|++. +..+...+...+. ++..... +..++.+. ++|+|++++
T Consensus 6 k~v~iiG~g~~G~~-~A~~l~~~G--~~V~-~~d~~~~~~~~~~~~~l~~~--~~~~~~~-~~~~~~~~--~~d~vv~~~ 76 (450)
T PRK14106 6 KKVLVVGAGVSGLA-LAKFLKKLG--AKVI-LTDEKEEDQLKEALEELGEL--GIELVLG-EYPEEFLE--GVDLVVVSP 76 (450)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEE-EEeCCchHHHHHHHHHHHhc--CCEEEeC-CcchhHhh--cCCEEEECC
Confidence 48999999999974 677777665 5665 456654 3343332322222 3322221 22334443 489999998
Q ss_pred CCcccHHHHHHHHHcCCeEEEe
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~E 103 (355)
-.....+.+.+|-+.|++|+..
T Consensus 77 g~~~~~~~~~~a~~~~i~~~~~ 98 (450)
T PRK14106 77 GVPLDSPPVVQAHKKGIEVIGE 98 (450)
T ss_pred CCCCCCHHHHHHHHCCCcEEeH
Confidence 8777778889999999998753
No 299
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.12 Score=49.96 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=56.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||.|+|+|..|.. .+..|...+ .+|++ +|..+++.+.+. +. ++....+ ....+.+.+ .|+|+++..-
T Consensus 14 ~v~V~G~G~sG~a-a~~~L~~~G--~~v~~-~D~~~~~~~~l~----~~--g~~~~~~-~~~~~~l~~--~D~VV~SpGi 80 (488)
T PRK03369 14 PVLVAGAGVTGRA-VLAALTRFG--ARPTV-CDDDPDALRPHA----ER--GVATVST-SDAVQQIAD--YALVVTSPGF 80 (488)
T ss_pred eEEEEcCCHHHHH-HHHHHHHCC--CEEEE-EcCCHHHHHHHH----hC--CCEEEcC-cchHhHhhc--CCEEEECCCC
Confidence 8999999999975 566666654 56655 887766544322 22 3322211 223344443 7877777655
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+.+++|.++|++|+-|
T Consensus 81 ~~~~p~~~~a~~~gi~v~~~ 100 (488)
T PRK03369 81 RPTAPVLAAAAAAGVPIWGD 100 (488)
T ss_pred CCCCHHHHHHHHCCCcEeeH
Confidence 55667888889999999976
No 300
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.66 E-value=0.041 Score=53.67 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=43.9
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|||||+|.||+. ....+...+ .+|.+ +|+.... +... .. ++.. .++++|++++ .|+|++++|.
T Consensus 140 tvgIiG~G~IG~~-vA~~l~~fG--~~V~~-~d~~~~~-~~~~----~~--g~~~---~~~l~ell~~--aDvV~l~lPl 203 (525)
T TIGR01327 140 TLGVIGLGRIGSI-VAKRAKAFG--MKVLA-YDPYISP-ERAE----QL--GVEL---VDDLDELLAR--ADFITVHTPL 203 (525)
T ss_pred EEEEECCCHHHHH-HHHHHHhCC--CEEEE-ECCCCCh-hHHH----hc--CCEE---cCCHHHHHhh--CCEEEEccCC
Confidence 7999999999986 777777664 67754 5764221 1111 12 3321 1589999987 7999999886
Q ss_pred c
Q 018445 84 Q 84 (355)
Q Consensus 84 ~ 84 (355)
.
T Consensus 204 t 204 (525)
T TIGR01327 204 T 204 (525)
T ss_pred C
Confidence 5
No 301
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.57 E-value=0.1 Score=45.01 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=48.2
Q ss_pred EEEEec-ccccchhccchhhhcCCeEEEEEEEeCCH-HHHHHHHHHHhhhcCCccccc-cCcc---hhhhhcCCCccEEE
Q 018445 5 IAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSE-ESAKSAAEVARKHFADVECVW-GDNG---LEQIIKEDSILGVA 78 (355)
Q Consensus 5 igiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ell~~~~~D~V~ 78 (355)
|.|+|. |..|.. .++.|.. .+ ++|.+++-... +.++.+.+ . ++.... .+.| +.+.|+ ++|+|+
T Consensus 1 I~V~GatG~~G~~-v~~~L~~-~~-~~V~~l~R~~~~~~~~~l~~----~--g~~vv~~d~~~~~~l~~al~--g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRS-VVRALLS-AG-FSVRALVRDPSSDRAQQLQA----L--GAEVVEADYDDPESLVAALK--GVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHH-HHHHHHH-TT-GCEEEEESSSHHHHHHHHHH----T--TTEEEES-TT-HHHHHHHHT--TCSEEE
T ss_pred CEEECCccHHHHH-HHHHHHh-CC-CCcEEEEeccchhhhhhhhc----c--cceEeecccCCHHHHHHHHc--CCceEE
Confidence 689995 999985 7888887 33 78888766542 33444443 1 222111 1233 444455 499999
Q ss_pred EecCCcc------cHHHHHHHHHcC
Q 018445 79 VVLAGQA------QVDTSLKLLKAG 97 (355)
Q Consensus 79 I~tp~~~------H~~~~~~al~~G 97 (355)
++++... +..++.+|.++|
T Consensus 70 ~~~~~~~~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 70 SVTPPSHPSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp EESSCSCCCHHHHHHHHHHHHHHHT
T ss_pred eecCcchhhhhhhhhhHHHhhhccc
Confidence 9999653 334444444444
No 302
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.48 E-value=1.3 Score=38.48 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=53.2
Q ss_pred cchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
.+.+.+.+ .+|++-|++.+-.++++.+++.+.||+|++-|+...+++|....++...+.|
T Consensus 90 ~~v~~~~e--~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~G 149 (250)
T PRK13397 90 RQLEEAYD--YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTG 149 (250)
T ss_pred HHHHHHHh--cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 34555545 4999999999999999999999999999999999999999999999988863
No 303
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.44 E-value=0.42 Score=42.07 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=52.9
Q ss_pred cchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
.+.+.+.+ - +|++-|++..-.+.++..++.+.||+|++.|+++.+++|....++..++.|
T Consensus 100 ~~~~~l~~-~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~G 159 (260)
T TIGR01361 100 RDVEIVAE-Y-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSG 159 (260)
T ss_pred hhHHHHHh-h-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 34455544 4 899999999999999999999999999999999999999999999998863
No 304
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.42 E-value=0.6 Score=42.91 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=56.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc--CcchhhhhcC-CCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWG--DNGLEQIIKE-DSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ell~~-~~~D~V~I~ 80 (355)
+|.|+|+|.+|.. .+..++..+ ...+.+.++++++.+.+.+ . +....+. ..+++++... ..+|+|+-+
T Consensus 172 ~VlV~G~G~vG~~-aiqlak~~G--~~~Vi~~~~~~~~~~~a~~----l--Ga~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 172 RVFVSGVGPIGCL-IVAAVKTLG--AAEIVCADVSPRSLSLARE----M--GADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred EEEEECCCHHHHH-HHHHHHHcC--CcEEEEEeCCHHHHHHHHH----c--CCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 6899999999974 555555543 5444556888888876544 3 3222211 1345555543 248999999
Q ss_pred cCCcccHHHHHHHHHcCCe-EEE
Q 018445 81 LAGQAQVDTSLKLLKAGKH-VIQ 102 (355)
Q Consensus 81 tp~~~H~~~~~~al~~Gkh-Vl~ 102 (355)
+....-.+.+..+++.|-. |++
T Consensus 243 ~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 SGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEE
Confidence 9876566677777877644 444
No 305
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.37 E-value=0.038 Score=52.03 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=43.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|||||+|+||+. ..+.+...+ .+|++ +|+.+... . .+.. . ..+++|+++. .|+|.++.|.
T Consensus 153 tvGIiG~G~IG~~-vA~~~~~fG--m~V~~-~d~~~~~~---------~-~~~~-~--~~~l~ell~~--sDiVslh~Pl 213 (409)
T PRK11790 153 TLGIVGYGHIGTQ-LSVLAESLG--MRVYF-YDIEDKLP---------L-GNAR-Q--VGSLEELLAQ--SDVVSLHVPE 213 (409)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEEEE-ECCCcccc---------c-CCce-e--cCCHHHHHhh--CCEEEEcCCC
Confidence 7999999999986 677777665 67755 57653210 0 0121 1 1689999997 7999999885
Q ss_pred c
Q 018445 84 Q 84 (355)
Q Consensus 84 ~ 84 (355)
.
T Consensus 214 t 214 (409)
T PRK11790 214 T 214 (409)
T ss_pred C
Confidence 3
No 306
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.35 E-value=0.14 Score=45.89 Aligned_cols=126 Identities=13% Similarity=0.022 Sum_probs=68.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCH---HHHHHHHHHHhhhcCCccccccCcchhh---hhc-CCCccE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE---ESAKSAAEVARKHFADVECVWGDNGLEQ---IIK-EDSILG 76 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e---ll~-~~~~D~ 76 (355)
++.|+|+|..++. .+..+...+ +.-+.|++|++ ++++.+++.+...++ ....+ .++++ +.+ -.+.|+
T Consensus 126 ~vlvlGaGGaarA-i~~~l~~~g--~~~i~i~nRt~~~~~ka~~la~~~~~~~~-~~~~~--~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 126 TMVLLGAGGASTA-IGAQGAIEG--LKEIKLFNRRDEFFDKALAFAQRVNENTD-CVVTV--TDLADQQAFAEALASADI 199 (288)
T ss_pred EEEEECCcHHHHH-HHHHHHHCC--CCEEEEEeCCccHHHHHHHHHHHhhhccC-ceEEE--echhhhhhhhhhcccCCE
Confidence 6899999998863 555555543 45568889984 588887764422211 11111 23322 111 135899
Q ss_pred EEEecCCcccHH----HH--HHHHHcCCeEEEe---cCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHH
Q 018445 77 VAVVLAGQAQVD----TS--LKLLKAGKHVIQE---KPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVE 147 (355)
Q Consensus 77 V~I~tp~~~H~~----~~--~~al~~GkhVl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~ 147 (355)
|+.+||...+.. .. ...+..+. ++++ +|. + -.+++.|++ +|....-|..+-......+
T Consensus 200 vINaTp~Gm~~~~~~~~~~~~~~l~~~~-~v~D~vY~P~-----~-T~ll~~A~~------~G~~~~~Gl~ML~~Qa~~~ 266 (288)
T PRK12749 200 LTNGTKVGMKPLENESLVNDISLLHPGL-LVTECVYNPH-----M-TKLLQQAQQ------AGCKTIDGYGMLLWQGAEQ 266 (288)
T ss_pred EEECCCCCCCCCCCCCCCCcHHHCCCCC-EEEEecCCCc-----c-CHHHHHHHH------CCCeEECCHHHHHHHHHHH
Confidence 999999876531 10 12233332 2222 332 1 245666666 3777766666555444444
Q ss_pred H
Q 018445 148 C 148 (355)
Q Consensus 148 ~ 148 (355)
.
T Consensus 267 f 267 (288)
T PRK12749 267 F 267 (288)
T ss_pred H
Confidence 3
No 307
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.33 E-value=0.099 Score=49.67 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=44.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
+|+|||+|.+|+. ....+...+ .+| -++++++.++..+.. . ++. + .+++++++. .|+|+++|.
T Consensus 256 tVgVIG~G~IGr~-vA~rL~a~G--a~V-iV~e~dp~~a~~A~~----~--G~~--~--~~leell~~--ADIVI~atG 318 (476)
T PTZ00075 256 TVVVCGYGDVGKG-CAQALRGFG--ARV-VVTEIDPICALQAAM----E--GYQ--V--VTLEDVVET--ADIFVTATG 318 (476)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEE-EEEeCCchhHHHHHh----c--Cce--e--ccHHHHHhc--CCEEEECCC
Confidence 7999999999985 677666654 564 568888877644332 1 332 1 578999875 899998854
No 308
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=94.31 E-value=0.22 Score=44.77 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=84.5
Q ss_pred ceEEEEecccccchhccchhh---h------------------cCCeEEEEEEEeCCHHHHHH-HHHHHhhhcCCccccc
Q 018445 3 PRIAILGAGIFVKTQYIPRLA---E------------------ISDLVSLKFIWSRSEESAKS-AAEVARKHFADVECVW 60 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~---~------------------~~~~~~vvai~d~~~~~~~~-~~~~~~~~~~~~~~~~ 60 (355)
+||||+|.|+-+.. +++.+. . ...++++||-+|.+..+.-. +.+.. ...|+....+
T Consensus 1 irvai~GvGncaSs-lvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai-~~~pN~t~~~ 78 (351)
T TIGR03450 1 VRVAIVGVGNCASS-LVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAI-FASENNTIKI 78 (351)
T ss_pred CeEEEEeccHHHHH-HHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHH-hcCCCCceee
Confidence 69999999997654 454442 1 11238999999998876421 22110 1112211111
Q ss_pred c--------------------------------CcchhhhhcCCCccEEEEecCCccc---HHHHHHHHHcCCeEEEecC
Q 018445 61 G--------------------------------DNGLEQIIKEDSILGVAVVLAGQAQ---VDTSLKLLKAGKHVIQEKP 105 (355)
Q Consensus 61 ~--------------------------------~~~~~ell~~~~~D~V~I~tp~~~H---~~~~~~al~~GkhVl~EKP 105 (355)
. ..|.-+.|.+.++|+++.-.|..+. .-++.+||++|.+..-=-|
T Consensus 79 ~~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P 158 (351)
T TIGR03450 79 ADVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALP 158 (351)
T ss_pred eccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccC
Confidence 0 0134455778889999999888755 4467899999998877777
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCeEEEEeccc----CchHHHHHHHHHHH
Q 018445 106 AAANISEIENALSRYNSICPDPPGQPIWAVAENYR----FEPAFVECKKLIAE 154 (355)
Q Consensus 106 ~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r----~~p~~~~~k~~i~~ 154 (355)
.... ..-++.+++++ +|+++ .|--.. -......+-+++.+
T Consensus 159 ~~ia--~~p~~a~~f~e------~glPi-~GDD~Ksq~GaTi~h~vLa~lf~~ 202 (351)
T TIGR03450 159 VFIA--SDPEWAKKFTD------AGVPI-VGDDIKSQVGATITHRVLAKLFED 202 (351)
T ss_pred cccc--CCHHHHHHHHH------CCCCE-ecccccccCCCchHHHHHHHHHHH
Confidence 4332 33456777777 36664 554443 23444455555554
No 309
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.27 E-value=0.049 Score=49.11 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=43.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|||||+|.||+. ....+...+ .+|+ ++|++... . +....+ .++++++++ .|+|+++.|
T Consensus 123 ktvgIiG~G~IG~~-vA~~l~afG--~~V~-~~~r~~~~-----~-------~~~~~~--~~l~ell~~--aDiv~~~lp 182 (303)
T PRK06436 123 KSLGILGYGGIGRR-VALLAKAFG--MNIY-AYTRSYVN-----D-------GISSIY--MEPEDIMKK--SDFVLISLP 182 (303)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCC--CEEE-EECCCCcc-----c-------Cccccc--CCHHHHHhh--CCEEEECCC
Confidence 38999999999985 566565554 6775 45765321 1 222112 689999987 799999999
Q ss_pred Ccc
Q 018445 83 GQA 85 (355)
Q Consensus 83 ~~~ 85 (355)
...
T Consensus 183 ~t~ 185 (303)
T PRK06436 183 LTD 185 (303)
T ss_pred CCc
Confidence 754
No 310
>PRK15076 alpha-galactosidase; Provisional
Probab=94.21 E-value=0.076 Score=50.39 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=47.2
Q ss_pred ceEEEEecccccch-hccchhh---hcCCeEEEEEEEeCCHHHHHHHHHHHhhh----cCCccccccCcchhhhhcCCCc
Q 018445 3 PRIAILGAGIFVKT-QYIPRLA---EISDLVSLKFIWSRSEESAKSAAEVARKH----FADVECVWGDNGLEQIIKEDSI 74 (355)
Q Consensus 3 ~rigiiG~G~~~~~-~~~~~l~---~~~~~~~vvai~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ell~~~~~ 74 (355)
+||+|||+|++|.. .++..+. ..++ .+ +.++|+++++++...+..+.. .+..... .++|+.+.+++ .
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~-~e-vvLvDid~er~~~~~~l~~~~~~~~~~~~~i~-~ttD~~eal~d--A 76 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRD-AE-IALMDIDPERLEESEIVARKLAESLGASAKIT-ATTDRREALQG--A 76 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCC-CE-EEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EECCHHHHhCC--C
Confidence 69999999997632 1223332 2222 24 478899999987543332222 2222222 24787888887 7
Q ss_pred cEEEEecCCc
Q 018445 75 LGVAVVLAGQ 84 (355)
Q Consensus 75 D~V~I~tp~~ 84 (355)
|.|+++....
T Consensus 77 DfVv~ti~vg 86 (431)
T PRK15076 77 DYVINAIQVG 86 (431)
T ss_pred CEEeEeeeeC
Confidence 9999887765
No 311
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.20 E-value=0.48 Score=44.94 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=71.8
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEe----------CCHHHHHHHHHHHh---hhcCCc-cccccCcchhh
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWS----------RSEESAKSAAEVAR---KHFADV-ECVWGDNGLEQ 67 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d----------~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~e 67 (355)
..||+|.|.|+.|.. .+..|.+.+ .+||+++| .|.+.+.+..+..+ ..++.. ...+ .+-++
T Consensus 232 g~rVaIqGfGnVG~~-~A~~L~~~G--akVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~--i~~~~ 306 (445)
T PRK09414 232 GKRVVVSGSGNVAIY-AIEKAQQLG--AKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY--LEGGS 306 (445)
T ss_pred CCEEEEECCCHHHHH-HHHHHHHCC--CEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee--cCCcc
Confidence 369999999999974 566666654 89999999 78776665543110 011110 1112 35567
Q ss_pred hhcCCCccEEEEecC-CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH
Q 018445 68 IIKEDSILGVAVVLA-GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 68 ll~~~~~D~V~I~tp-~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~ 117 (355)
+++ .++|+++=|+. +.-+.+.+....+.+..+++|--=..+..++.+++
T Consensus 307 i~~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 307 PWS-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH
Confidence 776 46899987654 46788888887777899999973333344455554
No 312
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.17 E-value=0.17 Score=42.73 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=68.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-HHHHHHHHHHhhhcCCccccccCcchh-hhhcCCCccEEEEec
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-ESAKSAAEVARKHFADVECVWGDNGLE-QIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-ell~~~~~D~V~I~t 81 (355)
||.|||.|.+|.. -+..|.+.+ .+|+-| +++. +..+.++. .. .+. +....++ +.++ +.|+|+.+|
T Consensus 12 ~vLVIGgG~va~~-ka~~Ll~~g--a~V~VI-s~~~~~~l~~l~~---~~--~i~--~~~~~~~~~~l~--~adlViaaT 78 (202)
T PRK06718 12 RVVIVGGGKVAGR-RAITLLKYG--AHIVVI-SPELTENLVKLVE---EG--KIR--WKQKEFEPSDIV--DAFLVIAAT 78 (202)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CeEEEE-cCCCCHHHHHHHh---CC--CEE--EEecCCChhhcC--CceEEEEcC
Confidence 8999999999975 566777654 355433 4443 22233332 11 111 1001222 2233 489999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH-HHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENAL-SRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~-~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 154 (355)
.+..=-..+....++++.|-+ +.+++.+.=.. ...++ .++.+.|..+-.---..+.+|+.|++
T Consensus 79 ~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~------g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 79 NDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHR------GKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred CCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEc------CCeEEEEECCCCChHHHHHHHHHHHH
Confidence 887644444444477765544 23333332222 22333 46777777666544444677777765
No 313
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.15 E-value=0.13 Score=50.43 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=56.2
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeC----------------------CHHHHHHHHHHHhhhcCCcccc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR----------------------SEESAKSAAEVARKHFADVECV 59 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~----------------------~~~~~~~~~~~~~~~~~~~~~~ 59 (355)
..||.|||+|..|.. .+..|.+.+ +.=..++|. ...+++.+++..++.+|++...
T Consensus 338 ~~kVLIvGaGGLGs~-VA~~La~~G--Vg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~ 414 (664)
T TIGR01381 338 QLKVLLLGAGTLGCN-VARCLIGWG--VRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQAT 414 (664)
T ss_pred cCeEEEECCcHHHHH-HHHHHHHcC--CCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEE
Confidence 358999999999975 677777654 232334443 2345555666666666665432
Q ss_pred ccC----------------------cchhhhhcCCCccEEEEecCCc-ccHHHHHHHHHcCCeEE
Q 018445 60 WGD----------------------NGLEQIIKEDSILGVAVVLAGQ-AQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 60 ~~~----------------------~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~~GkhVl 101 (355)
... .+++++++. .|+|+.||.+. .+.-+...|.+.||+++
T Consensus 415 ~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~--~DvV~d~tDn~esR~L~n~~c~~~~kplI 477 (664)
T TIGR01381 415 GHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD--HDVVFLLLDSREARWLPTVLCSRHKKIAI 477 (664)
T ss_pred EeeeeeccccccCCchhhhhccccHHHHHHHHhh--CCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 100 123445554 67777777773 55666666666666554
No 314
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.08 E-value=1.3 Score=36.46 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=65.7
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+.=||||.-+. -+......+. .+++|| |+++++.+...+..+++ .+++...-+ +.++.|-.-+++|+++|.-.
T Consensus 38 l~DIGaGtGsi--~iE~a~~~p~-~~v~AI-e~~~~a~~~~~~N~~~fg~~n~~vv~g-~Ap~~L~~~~~~daiFIGGg- 111 (187)
T COG2242 38 LWDIGAGTGSI--TIEWALAGPS-GRVIAI-ERDEEALELIERNAARFGVDNLEVVEG-DAPEALPDLPSPDAIFIGGG- 111 (187)
T ss_pred EEEeCCCccHH--HHHHHHhCCC-ceEEEE-ecCHHHHHHHHHHHHHhCCCcEEEEec-cchHhhcCCCCCCEEEECCC-
Confidence 44578876443 2333333444 688887 99999988877655455 333333321 33444444457999999977
Q ss_pred cccHHHHHHH---HHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 84 QAQVDTSLKL---LKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 84 ~~H~~~~~~a---l~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
..=..+...| |+.|-.+..- +.+++-+..+++.-++.
T Consensus 112 ~~i~~ile~~~~~l~~ggrlV~n---aitlE~~~~a~~~~~~~ 151 (187)
T COG2242 112 GNIEEILEAAWERLKPGGRLVAN---AITLETLAKALEALEQL 151 (187)
T ss_pred CCHHHHHHHHHHHcCcCCeEEEE---eecHHHHHHHHHHHHHc
Confidence 3333333333 3445566665 67777777777777663
No 315
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=94.07 E-value=0.029 Score=41.19 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=51.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhc---CCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIK---EDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~---~~~~D~V~I 79 (355)
|||.|||.|..-. .....|.+.+. +.-+.++.-|+...+.. + .+... .+|++++++ +.++|.|+|
T Consensus 1 MkVLviGsGgREH-Aia~~l~~s~~-v~~v~~aPGN~G~~~~~-----~---~~~~~--~~d~~~l~~~a~~~~idlvvv 68 (100)
T PF02844_consen 1 MKVLVIGSGGREH-AIAWKLSQSPS-VEEVYVAPGNPGTAELG-----K---NVPID--ITDPEELADFAKENKIDLVVV 68 (100)
T ss_dssp EEEEEEESSHHHH-HHHHHHTTCTT-EEEEEEEE--TTGGGTS-----E---EE-S---TT-HHHHHHHHHHTTESEEEE
T ss_pred CEEEEECCCHHHH-HHHHHHhcCCC-CCEEEEeCCCHHHHhhc-----e---ecCCC--CCCHHHHHHHHHHcCCCEEEE
Confidence 7999999994332 13344455554 65556666655443221 1 11111 155555544 688999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEE
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl 101 (355)
..-...-.-++-...++|.+||
T Consensus 69 GPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 69 GPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp SSHHHHHTTHHHHHHHTT-CEE
T ss_pred CChHHHHHHHHHHHHHCCCcEE
Confidence 9877777778888888888776
No 316
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.07 E-value=0.092 Score=48.95 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=45.0
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
.||+||| +|.||.. ....|.+.+ .+| -++|++.. ++.++++.+ .|+|++|+
T Consensus 99 ~~I~IiGG~GlmG~s-lA~~l~~~G--~~V-~~~d~~~~----------------------~~~~~~~~~--aDlVilav 150 (374)
T PRK11199 99 RPVVIVGGKGQLGRL-FAKMLTLSG--YQV-RILEQDDW----------------------DRAEDILAD--AGMVIVSV 150 (374)
T ss_pred ceEEEEcCCChhhHH-HHHHHHHCC--CeE-EEeCCCcc----------------------hhHHHHHhc--CCEEEEeC
Confidence 5899999 9999986 778887755 344 45566421 234555554 78999999
Q ss_pred CCcccHHHHHHHHH
Q 018445 82 AGQAQVDTSLKLLK 95 (355)
Q Consensus 82 p~~~H~~~~~~al~ 95 (355)
|...-.+++.....
T Consensus 151 P~~~~~~~~~~l~~ 164 (374)
T PRK11199 151 PIHLTEEVIARLPP 164 (374)
T ss_pred cHHHHHHHHHHHhC
Confidence 99877666665433
No 317
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.05 E-value=0.064 Score=52.38 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||||+|.||+. ....+...+ .+|+ .+|+..... ... .. ++. + .+++|++++ .|+|++++|
T Consensus 141 ktvgIiG~G~IG~~-vA~~l~~fG--~~V~-~~d~~~~~~-~~~----~~--g~~--~--~~l~ell~~--aDiV~l~lP 203 (526)
T PRK13581 141 KTLGIIGLGRIGSE-VAKRAKAFG--MKVI-AYDPYISPE-RAA----QL--GVE--L--VSLDELLAR--ADFITLHTP 203 (526)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CEEE-EECCCCChh-HHH----hc--CCE--E--EcHHHHHhh--CCEEEEccC
Confidence 37999999999986 677777664 6775 457653221 111 11 332 2 479999986 799999988
Q ss_pred Cc
Q 018445 83 GQ 84 (355)
Q Consensus 83 ~~ 84 (355)
..
T Consensus 204 ~t 205 (526)
T PRK13581 204 LT 205 (526)
T ss_pred CC
Confidence 75
No 318
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.00 E-value=0.29 Score=44.54 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=42.9
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--CCcc-ccccCcchhhhhcCCCccEEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--ADVE-CVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~ell~~~~~D~V~ 78 (355)
.+||+|||+|.+|.. ....+...+- .+ +.++|+++++++..+-...... .+.. ....+++++++ .+ .|+|+
T Consensus 5 ~~KI~IIGaG~vG~~-ia~~l~~~~~-~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~--ADiVV 78 (319)
T PTZ00117 5 RKKISMIGAGQIGST-VALLILQKNL-GD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD--SDVVV 78 (319)
T ss_pred CcEEEEECCCHHHHH-HHHHHHHCCC-Ce-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC--CCEEE
Confidence 469999999999975 4444444332 45 6888999877653221010110 1111 11113678844 54 79999
Q ss_pred Eec
Q 018445 79 VVL 81 (355)
Q Consensus 79 I~t 81 (355)
++.
T Consensus 79 ita 81 (319)
T PTZ00117 79 ITA 81 (319)
T ss_pred ECC
Confidence 987
No 319
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.99 E-value=0.21 Score=42.24 Aligned_cols=127 Identities=11% Similarity=0.059 Sum_probs=75.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-HHHHHHHHHHhhhcCCccccccCcch-hhhhcCCCccEEEEec
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-ESAKSAAEVARKHFADVECVWGDNGL-EQIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~ell~~~~~D~V~I~t 81 (355)
||.|||.|..|.. -+..|.+.+ ..|+ |++++. +..+.+++ .. .+... ..++ .+.++ +.++|+++|
T Consensus 11 ~vlVvGgG~va~r-k~~~Ll~~g--a~Vt-Vvsp~~~~~l~~l~~---~~--~i~~~--~~~~~~~dl~--~~~lVi~at 77 (205)
T TIGR01470 11 AVLVVGGGDVALR-KARLLLKAG--AQLR-VIAEELESELTLLAE---QG--GITWL--ARCFDADILE--GAFLVIAAT 77 (205)
T ss_pred eEEEECcCHHHHH-HHHHHHHCC--CEEE-EEcCCCCHHHHHHHH---cC--CEEEE--eCCCCHHHhC--CcEEEEECC
Confidence 7999999999976 577777655 4554 445543 23333333 11 22111 0122 23344 489999999
Q ss_pred CCc-ccHHHHHHHHHcCCeEEE-ecCCCCCHHHHHH-HHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH
Q 018445 82 AGQ-AQVDTSLKLLKAGKHVIQ-EKPAAANISEIEN-ALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 82 p~~-~H~~~~~~al~~GkhVl~-EKP~a~~~~e~~~-l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 154 (355)
.+. ....+...|-++|+.|-+ ..| +.+.= +-...++ .++.+.|..+-.---..+.+|+.|++
T Consensus 78 ~d~~ln~~i~~~a~~~~ilvn~~d~~-----e~~~f~~pa~~~~------g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 78 DDEELNRRVAHAARARGVPVNVVDDP-----ELCSFIFPSIVDR------SPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCc-----ccCeEEEeeEEEc------CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 997 788888898889988742 222 11111 1123333 46777777665555555677777765
No 320
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.2 Score=47.88 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=54.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|.|+|.|.+|.. ....|.+.+ .+|+ ++|.+........+..... ++....+ .+..+++. ..+|.|+++..-
T Consensus 7 ~v~v~G~g~~G~s-~a~~l~~~G--~~V~-~~d~~~~~~~~~~~~l~~~--g~~~~~~-~~~~~~~~-~~~d~vV~s~gi 78 (447)
T PRK02472 7 KVLVLGLAKSGYA-AAKLLHKLG--ANVT-VNDGKPFSENPEAQELLEE--GIKVICG-SHPLELLD-EDFDLMVKNPGI 78 (447)
T ss_pred EEEEEeeCHHHHH-HHHHHHHCC--CEEE-EEcCCCccchhHHHHHHhc--CCEEEeC-CCCHHHhc-CcCCEEEECCCC
Confidence 6899999999976 566676654 5664 4577654332222222222 3332221 23344443 248877665533
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+...+|.+.|++|+.|
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~ 98 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITE 98 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeH
Confidence 44557888889999999865
No 321
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.72 E-value=0.15 Score=48.18 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=52.1
Q ss_pred ceEEEEecccccchhccchhhhcCC--eEEEEEEEeCCHHHHHHHHHHHh----hhcCCccccccCcchhhhhcCCCccE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISD--LVSLKFIWSRSEESAKSAAEVAR----KHFADVECVWGDNGLEQIIKEDSILG 76 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~--~~~vvai~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ell~~~~~D~ 76 (355)
|||.|||.|+.-....+..|...+. ...=+.++|++++|.+.....++ +.++.+... .++|.++.|++ .|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~-~ttD~~~Al~g--ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFE-KTMDLEDAIID--ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEE-EeCCHHHHhCC--CCE
Confidence 6999999998422223444443221 12344788999999887554333 334444332 25899999998 899
Q ss_pred EEEecCCccc
Q 018445 77 VAVVLAGQAQ 86 (355)
Q Consensus 77 V~I~tp~~~H 86 (355)
|+......-+
T Consensus 78 Vi~~irvGg~ 87 (425)
T cd05197 78 VINQFRVGGL 87 (425)
T ss_pred EEEeeecCCh
Confidence 9988776544
No 322
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.71 E-value=0.12 Score=46.90 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=47.1
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc---CCccccccCcchhhhhcCCCccEEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF---ADVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
..||+|||+|.+|.. ....|...+- +.-+.++|++.++++..+....... ...... .++|+++ ++ .|+|+
T Consensus 6 ~~ki~iiGaG~vG~~-~a~~l~~~~~-~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~~~~-~~--adivI 78 (315)
T PRK00066 6 HNKVVLVGDGAVGSS-YAYALVNQGI-ADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDYSDC-KD--ADLVV 78 (315)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhcCC-CCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCHHHh-CC--CCEEE
Confidence 469999999999975 5555655443 4445788999888776654332221 122211 2577774 44 89999
Q ss_pred EecC
Q 018445 79 VVLA 82 (355)
Q Consensus 79 I~tp 82 (355)
|+.-
T Consensus 79 itag 82 (315)
T PRK00066 79 ITAG 82 (315)
T ss_pred EecC
Confidence 9754
No 323
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.66 E-value=0.39 Score=43.31 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=61.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcch---hhh---hcCCCccEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGL---EQI---IKEDSILGV 77 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~el---l~~~~~D~V 77 (355)
.++|+|+|.+|-. .+......+- -+|+|| |+++++.+.+.+ + +...++.-.+. -+. +.+-.+|.+
T Consensus 188 tvaV~GlGgVGla-aI~gA~~agA-~~IiAv-D~~~~Kl~~A~~----f--GAT~~vn~~~~~~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 188 TVAVFGLGGVGLA-AIQGAKAAGA-GRIIAV-DINPEKLELAKK----F--GATHFVNPKEVDDVVEAIVELTDGGADYA 258 (366)
T ss_pred eEEEEeccHhHHH-HHHHHHHcCC-ceEEEE-eCCHHHHHHHHh----c--CCceeecchhhhhHHHHHHHhcCCCCCEE
Confidence 5899999999975 6666665554 467666 999999988765 3 44444311112 111 223478999
Q ss_pred EEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 78 AVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
+.++-+-.+.+.+.++...+ +-|++==|
T Consensus 259 ~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 259 FECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred EEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 99888887777777766654 56665544
No 324
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.59 E-value=0.12 Score=46.77 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=44.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCC-cc-ccccCcchhhhhcCCCccEEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH--FAD-VE-CVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~ell~~~~~D~V~I 79 (355)
||+|||+|.+|.. .+..|...+- +.=+.++|.++++++.-+--.... ++. .. ..+ ..+|+++-+ .|+|+|
T Consensus 1 Ki~IIGaG~VG~~-~a~~l~~~~~-~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~~~y~~~~~---aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSA-VLNYALALGL-FSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-AGDYDDCAD---ADIIVI 74 (307)
T ss_pred CEEEECCCHHHHH-HHHHHHhcCC-CCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-ECCHHHhCC---CCEEEE
Confidence 7999999999975 5555554332 444578899988776654322221 111 11 122 256766544 799999
Q ss_pred ecC
Q 018445 80 VLA 82 (355)
Q Consensus 80 ~tp 82 (355)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 854
No 325
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.56 E-value=0.68 Score=42.80 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=52.5
Q ss_pred chhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 64 GLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 64 ~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
+.+.+.+ - +|++-|++..-.++++..++.+.||+|++.|+++.+++|....++...+.|
T Consensus 194 ~~~~l~~-~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~G 252 (360)
T PRK12595 194 DVEVALD-Y-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQG 252 (360)
T ss_pred HHHHHHH-h-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCC
Confidence 4455544 4 999999999999999999999999999999999999999999999998863
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.28 Score=47.40 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCC-HHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-EESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||.|||.|.+|.. .+..|.+.+ .+|+ ++|.+ .+......+..++. ++....+ .+.+ . ..++|+|++++-
T Consensus 18 ~v~viG~G~~G~~-~A~~L~~~G--~~V~-~~d~~~~~~~~~~~~~l~~~--gv~~~~~-~~~~-~--~~~~D~Vv~s~G 87 (480)
T PRK01438 18 RVVVAGLGVSGFA-AADALLELG--ARVT-VVDDGDDERHRALAAILEAL--GATVRLG-PGPT-L--PEDTDLVVTSPG 87 (480)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEEE-EEeCCchhhhHHHHHHHHHc--CCEEEEC-CCcc-c--cCCCCEEEECCC
Confidence 7999999999986 567776654 5654 45644 33333333333333 4433221 1222 2 234899999887
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018445 83 GQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~E 103 (355)
-....+.+..|.++|.+|+-|
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~ 108 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGE 108 (480)
T ss_pred cCCCCHHHHHHHHCCCeecch
Confidence 766677888888999998654
No 327
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.42 E-value=0.082 Score=48.07 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=42.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|||||+|+||+. ..+.+...+ .+|+++ |+.... . .. .+ .+++|+++. .|+|+++.|-
T Consensus 150 tvgIiG~G~IG~~-vA~~l~~fg--m~V~~~-~~~~~~-----~-------~~--~~--~~l~ell~~--sDiv~l~lPl 207 (317)
T PRK06487 150 TLGLLGHGELGGA-VARLAEAFG--MRVLIG-QLPGRP-----A-------RP--DR--LPLDELLPQ--VDALTLHCPL 207 (317)
T ss_pred EEEEECCCHHHHH-HHHHHhhCC--CEEEEE-CCCCCc-----c-------cc--cc--cCHHHHHHh--CCEEEECCCC
Confidence 8999999999986 677776664 687654 554210 0 11 11 589999997 7999999986
Q ss_pred c
Q 018445 84 Q 84 (355)
Q Consensus 84 ~ 84 (355)
.
T Consensus 208 t 208 (317)
T PRK06487 208 T 208 (317)
T ss_pred C
Confidence 4
No 328
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.41 E-value=0.8 Score=41.96 Aligned_cols=58 Identities=21% Similarity=0.060 Sum_probs=51.6
Q ss_pred chhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 64 GLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 64 ~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+.+.+.+ - +|++-|++.+-.++++.+++.+.||+|++.++++.|++|....++...+.
T Consensus 177 ~v~~~~~-~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~ 234 (352)
T PRK13396 177 DLEKIAE-V-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAA 234 (352)
T ss_pred HHHHHHh-h-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4444444 3 89999999999999999999999999999999999999999999988875
No 329
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.41 E-value=0.19 Score=45.41 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=43.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHH-HHHhhh-cCCcc-ccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAA-EVARKH-FADVE-CVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~-~~~~~~-~~~~~-~~~~~~~~~ell~~~~~D~V~I 79 (355)
+||+|||+|.+|.. ....+...+. .+ +.++|++++.++..+ +..... ..... ....++|+++ +++ .|+|+|
T Consensus 2 ~KV~VIGaG~vG~~-iA~~la~~g~-~~-VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~--aDiVIi 75 (305)
T TIGR01763 2 KKISVIGAGFVGAT-TAFRLAEKEL-AD-LVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN--SDIVVI 75 (305)
T ss_pred CEEEEECcCHHHHH-HHHHHHHcCC-Ce-EEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC--CCEEEE
Confidence 58999999999975 5555555443 35 567788766554222 111000 00001 1111378888 444 799999
Q ss_pred ecCC
Q 018445 80 VLAG 83 (355)
Q Consensus 80 ~tp~ 83 (355)
+.+.
T Consensus 76 tag~ 79 (305)
T TIGR01763 76 TAGL 79 (305)
T ss_pred cCCC
Confidence 8773
No 330
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=93.40 E-value=0.23 Score=47.31 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=60.7
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeC-CHHHHHHHHHHHhhhcCCccccccCcchhhhhc---CCCccE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR-SEESAKSAAEVARKHFADVECVWGDNGLEQIIK---EDSILG 76 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~---~~~~D~ 76 (355)
|+|||.|||.|..... ....|++.+ .+|.++... ++... ..+. .+. .+ ...|++++++ +.++|+
T Consensus 1 ~~~kVLvlG~G~re~a-l~~~l~~~g--~~v~~~~~~~Npg~~-~~a~---~~~-~~----~~~d~e~l~~~~~~~~id~ 68 (435)
T PRK06395 1 MTMKVMLVGSGGREDA-IARAIKRSG--AILFSVIGHENPSIK-KLSK---KYL-FY----DEKDYDLIEDFALKNNVDI 68 (435)
T ss_pred CceEEEEECCcHHHHH-HHHHHHhCC--CeEEEEECCCChhhh-hccc---cee-ec----CCCCHHHHHHHHHHhCCCE
Confidence 8999999999975532 444566654 466666332 32221 1221 111 11 1256666544 688999
Q ss_pred EEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHH-HHHHhhc
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIEN-ALSRYNS 122 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~-l~~~a~~ 122 (355)
|++......-..++.+..+.|.+|+.-.+-+.-.+.-+. +.++.++
T Consensus 69 Vi~~~d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~ 115 (435)
T PRK06395 69 VFVGPDPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMER 115 (435)
T ss_pred EEECCChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHH
Confidence 998744445445555667789888864333322222222 2455555
No 331
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=93.34 E-value=0.082 Score=43.18 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=46.4
Q ss_pred EEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCCc
Q 018445 6 AILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAGQ 84 (355)
Q Consensus 6 giiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~ 84 (355)
-++|.|..+.. ....+.+.+ .+.+++|++|.++..... ...+.+..-..+++.+++.+.++|-|+|+.|..
T Consensus 81 ~~v~~~~~~~~-~~~~l~~~~~~g~~vvg~~d~~~~~~~~-------~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~ 152 (175)
T PF13727_consen 81 LIVGAGGAGRE-LAEALRSNPRLGYRVVGFVDDDPSDRGP-------EIDGVPVLGDLDDLPELVREHDIDEVIIALPWS 152 (175)
T ss_dssp EEE--SHHHHH-HHHHHHH--SSSEEEEEEE-S-GGGTT--------EETTEEEE--GGGHHHHHHHHT--EEEE--TTS
T ss_pred EEEEEechHHH-HHHHHHhhhhcCceEEEEEeCchhhccC-------cccCceeEcCHHHHHHHHHhCCCCEEEEEcCcc
Confidence 46676666654 566666433 248999999998765322 111333221237888888889999999999998
Q ss_pred ccHHH---HHHHHHcCCeEE
Q 018445 85 AQVDT---SLKLLKAGKHVI 101 (355)
Q Consensus 85 ~H~~~---~~~al~~GkhVl 101 (355)
.+..+ +..|-+.|.+|.
T Consensus 153 ~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 153 EEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp -HHHHHHHHHHHHTTT-EEE
T ss_pred CHHHHHHHHHHHHhCCCEEE
Confidence 76543 344444555554
No 332
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.32 E-value=0.19 Score=43.22 Aligned_cols=103 Identities=15% Similarity=0.018 Sum_probs=58.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEE--EEEEEeCC----HHHH-------HHHHHHHhhhcCCccccccCcchhhhh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVS--LKFIWSRS----EESA-------KSAAEVARKHFADVECVWGDNGLEQII 69 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~--vvai~d~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ell 69 (355)
.||.|+|+|..|.. ....|...+ +. -+.++|++ .+++ +.+++ ... ... . ..++.+.+
T Consensus 26 ~rvlvlGAGgAg~a-iA~~L~~~G--~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~-~~~-~--~~~l~~~l 95 (226)
T cd05311 26 VKIVINGAGAAGIA-IARLLLAAG--AKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETN-PEK-T--GGTLKEAL 95 (226)
T ss_pred CEEEEECchHHHHH-HHHHHHHcC--cCcceEEEEeCCCccccccchhhhHHHHHHHH---Hhc-cCc-c--cCCHHHHH
Confidence 48999999999975 666666543 44 56888998 5554 22332 221 011 1 03576667
Q ss_pred cCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 70 KEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 70 ~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
.+ +|+++-+||....-+...+.+..+ +++. |+. ++. ...+.+.+++
T Consensus 96 ~~--~dvlIgaT~~G~~~~~~l~~m~~~-~ivf--~ls-nP~-~e~~~~~A~~ 141 (226)
T cd05311 96 KG--ADVFIGVSRPGVVKKEMIKKMAKD-PIVF--ALA-NPV-PEIWPEEAKE 141 (226)
T ss_pred hc--CCEEEeCCCCCCCCHHHHHhhCCC-CEEE--EeC-CCC-CcCCHHHHHH
Confidence 65 899999998655433333444433 3333 333 222 1336666666
No 333
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.29 E-value=0.26 Score=45.89 Aligned_cols=71 Identities=8% Similarity=0.081 Sum_probs=46.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc-CcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWG-DNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ell~~~~~D~V~I~t 81 (355)
-||.|||+|.+|.. .+..+...+ .+ |.++|+++++++.+... +...+...+. ..++++.+.+ .|+|+.++
T Consensus 168 ~~VlViGaG~vG~~-aa~~a~~lG--a~-V~v~d~~~~~~~~l~~~---~g~~v~~~~~~~~~l~~~l~~--aDvVI~a~ 238 (370)
T TIGR00518 168 GDVTIIGGGVVGTN-AAKMANGLG--AT-VTILDINIDRLRQLDAE---FGGRIHTRYSNAYEIEDAVKR--ADLLIGAV 238 (370)
T ss_pred ceEEEEcCCHHHHH-HHHHHHHCC--Ce-EEEEECCHHHHHHHHHh---cCceeEeccCCHHHHHHHHcc--CCEEEEcc
Confidence 37999999999985 677777765 56 56689999998877652 2111111110 0345556654 89999887
Q ss_pred C
Q 018445 82 A 82 (355)
Q Consensus 82 p 82 (355)
+
T Consensus 239 ~ 239 (370)
T TIGR00518 239 L 239 (370)
T ss_pred c
Confidence 3
No 334
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.26 E-value=0.26 Score=36.60 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=49.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
-+|.|||.|..+.. -+..|.+.+ .+|+-+.... +..+ + .+... ...+++.++. .++|+++|+
T Consensus 8 ~~vlVvGgG~va~~-k~~~Ll~~g--A~v~vis~~~-~~~~---~-------~i~~~--~~~~~~~l~~--~~lV~~at~ 69 (103)
T PF13241_consen 8 KRVLVVGGGPVAAR-KARLLLEAG--AKVTVISPEI-EFSE---G-------LIQLI--RREFEEDLDG--ADLVFAATD 69 (103)
T ss_dssp -EEEEEEESHHHHH-HHHHHCCCT--BEEEEEESSE-HHHH---T-------SCEEE--ESS-GGGCTT--ESEEEE-SS
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CEEEEECCch-hhhh---h-------HHHHH--hhhHHHHHhh--heEEEecCC
Confidence 48999999999976 566666654 5665554443 1111 1 12111 1455666665 899999997
Q ss_pred Cc-ccHHHHHHHHHcCCeEEEe
Q 018445 83 GQ-AQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~-~H~~~~~~al~~GkhVl~E 103 (355)
+. ....+...|-++|+.|-+-
T Consensus 70 d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 70 DPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp -HHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHhhCCEEEEEC
Confidence 74 5566666776688877653
No 335
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.26 E-value=0.063 Score=49.46 Aligned_cols=90 Identities=14% Similarity=0.205 Sum_probs=53.6
Q ss_pred CceEEEEec-ccccchhccchhhhcCCeEE---EEEEEeCCHHHHHHHHHHHhhhcCCcc-ccccCcchhhhhcCCCccE
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISDLVS---LKFIWSRSEESAKSAAEVARKHFADVE-CVWGDNGLEQIIKEDSILG 76 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~~---vvai~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ell~~~~~D~ 76 (355)
-+||||||+ |-.|.. .+..+.++++ +. ++.+.+. ........ + .+.. ......+.++ + .++|+
T Consensus 1 m~~VAIVGATG~vG~e-ll~llL~~~~-f~~~~l~~~ss~--~sg~~~~~----f-~g~~~~v~~~~~~~~-~--~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSV-LMQRMVEEND-FDLIEPVFFSTS--QAGGAAPS----F-GGKEGTLQDAFDIDA-L--KKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHH-HHHHHHhCCC-CCcCcEEEecch--hhCCcccc----c-CCCcceEEecCChhH-h--cCCCE
Confidence 079999996 666765 7775666665 66 6664332 11111110 1 1110 1100012233 3 34999
Q ss_pred EEEecCCcccHHHHHHHHHcCCe-EEEe
Q 018445 77 VAVVLAGQAQVDTSLKLLKAGKH-VIQE 103 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~Gkh-Vl~E 103 (355)
|+.++|+....+++.++.++|+. +.++
T Consensus 69 vf~a~~~~~s~~~~~~~~~aG~~~~VID 96 (369)
T PRK06598 69 IITCQGGDYTNEVYPKLRAAGWQGYWID 96 (369)
T ss_pred EEECCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999974 4444
No 336
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.17 E-value=0.3 Score=46.95 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=53.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHH-HHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESA-KSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||+|+|+|..|.. ....|.+.+ .+| .++|.++... ....+..++. ++....+ ....+.+. ++|+|+++..
T Consensus 16 ~i~v~G~G~sG~a-~a~~L~~~G--~~V-~~~D~~~~~~~~~~~~~l~~~--gi~~~~~-~~~~~~~~--~~dlVV~Spg 86 (458)
T PRK01710 16 KVAVVGIGVSNIP-LIKFLVKLG--AKV-TAFDKKSEEELGEVSNELKEL--GVKLVLG-ENYLDKLD--GFDVIFKTPS 86 (458)
T ss_pred eEEEEcccHHHHH-HHHHHHHCC--CEE-EEECCCCCccchHHHHHHHhC--CCEEEeC-CCChHHhc--cCCEEEECCC
Confidence 8999999999974 566666655 455 4578764211 1111111122 3332221 22334444 3788877633
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018445 83 GQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~E 103 (355)
-....+.+.+|.+.|++|+.|
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~ 107 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSE 107 (458)
T ss_pred CCCCchHHHHHHHcCCcEEec
Confidence 345567888889999999875
No 337
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.08 E-value=0.15 Score=46.24 Aligned_cols=83 Identities=22% Similarity=0.118 Sum_probs=45.0
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--CCccc---cccCcchhhhhcCCCccE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--ADVEC---VWGDNGLEQIIKEDSILG 76 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~ell~~~~~D~ 76 (355)
.|||+|||+|.+|.. +...|.+.+ .+|+ ++.+++. +...+...... .+-.. .-.+++.++ .+.+|.
T Consensus 5 ~m~I~IiG~GaiG~~-lA~~L~~~g--~~V~-~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGTGAIGGF-YGAMLARAG--FDVH-FLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED---MPPCDW 75 (313)
T ss_pred CcEEEEECCCHHHHH-HHHHHHHCC--CeEE-EEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh---cCCCCE
Confidence 479999999999985 777777655 3554 3345542 22222110000 00000 000123332 245899
Q ss_pred EEEecCCcccHHHHHHH
Q 018445 77 VAVVLAGQAQVDTSLKL 93 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~a 93 (355)
|+||++.....+.+...
T Consensus 76 vilavK~~~~~~~~~~l 92 (313)
T PRK06249 76 VLVGLKTTANALLAPLI 92 (313)
T ss_pred EEEEecCCChHhHHHHH
Confidence 99999988776655443
No 338
>PLN02306 hydroxypyruvate reductase
Probab=93.05 E-value=0.16 Score=47.35 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=42.8
Q ss_pred ceEEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHH-HHHHHHHHhhhcC--------CccccccCcchhhhhcCC
Q 018445 3 PRIAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEES-AKSAAEVARKHFA--------DVECVWGDNGLEQIIKED 72 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~ell~~~ 72 (355)
-+|||||+|+||+. ..+.+. ..+ .+|. .+|+.+.. .+.+.. .+.. .....+ ..+++|+++.
T Consensus 166 ktvGIiG~G~IG~~-vA~~l~~~fG--m~V~-~~d~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~-~~~L~ell~~- 236 (386)
T PLN02306 166 QTVGVIGAGRIGSA-YARMMVEGFK--MNLI-YYDLYQSTRLEKFVT---AYGQFLKANGEQPVTWKR-ASSMEEVLRE- 236 (386)
T ss_pred CEEEEECCCHHHHH-HHHHHHhcCC--CEEE-EECCCCchhhhhhhh---hhcccccccccccccccc-cCCHHHHHhh-
Confidence 37999999999985 555553 443 6775 45776532 111111 1100 000011 2589999997
Q ss_pred CccEEEEecCC
Q 018445 73 SILGVAVVLAG 83 (355)
Q Consensus 73 ~~D~V~I~tp~ 83 (355)
.|+|++++|-
T Consensus 237 -sDiV~lh~Pl 246 (386)
T PLN02306 237 -ADVISLHPVL 246 (386)
T ss_pred -CCEEEEeCCC
Confidence 7999999884
No 339
>PLN02494 adenosylhomocysteinase
Probab=93.05 E-value=0.25 Score=46.88 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=48.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|+|+|+|.+|+. ....+...+ .+| -++++++.++..+.. . +... .++++++.. .|+|+.+|.+
T Consensus 256 tVvViGyG~IGr~-vA~~aka~G--a~V-IV~e~dp~r~~eA~~----~--G~~v----v~leEal~~--ADVVI~tTGt 319 (477)
T PLN02494 256 VAVICGYGDVGKG-CAAAMKAAG--ARV-IVTEIDPICALQALM----E--GYQV----LTLEDVVSE--ADIFVTTTGN 319 (477)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEE-EEEeCCchhhHHHHh----c--CCee----ccHHHHHhh--CCEEEECCCC
Confidence 7999999999986 677666654 565 457999877554432 1 3221 357888765 7888876554
Q ss_pred ccc-HHHHHHHHHcC
Q 018445 84 QAQ-VDTSLKLLKAG 97 (355)
Q Consensus 84 ~~H-~~~~~~al~~G 97 (355)
..= ..-..+.++.|
T Consensus 320 ~~vI~~e~L~~MK~G 334 (477)
T PLN02494 320 KDIIMVDHMRKMKNN 334 (477)
T ss_pred ccchHHHHHhcCCCC
Confidence 321 13334444444
No 340
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.97 E-value=0.81 Score=40.98 Aligned_cols=135 Identities=10% Similarity=0.103 Sum_probs=81.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhh---h----hcCCCcc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQ---I----IKEDSIL 75 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---l----l~~~~~D 75 (355)
=|+.|+|+|.||-. -+...+..+- .+| .+.|..+.|++.+.+..-+.+...... .+.++ + +.+..+|
T Consensus 171 s~vLV~GAGPIGl~-t~l~Aka~GA-~~V-Vi~d~~~~Rle~Ak~~Ga~~~~~~~~~---~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLL-TGLVAKAMGA-SDV-VITDLVANRLELAKKFGATVTDPSSHK---SSPQELAELVEKALGKKQPD 244 (354)
T ss_pred CeEEEECCcHHHHH-HHHHHHHcCC-CcE-EEeecCHHHHHHHHHhCCeEEeecccc---ccHHHHHHHHHhhccccCCC
Confidence 38999999999974 4445555543 344 566888888887765211111111111 12233 3 3335599
Q ss_pred EEEEecCCcccHHHHHHHHHcCCe-EEEe--c-CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCch-HHHHHHH
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAGKH-VIQE--K-PAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEP-AFVECKK 150 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~Gkh-Vl~E--K-P~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p-~~~~~k~ 150 (355)
.++-||--..-.+.+..|++.|=+ |+.. + ++...+ ...+-+ . +-+--.+||.- .|..+.+
T Consensus 245 ~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi------~~v~~k-------E--~~~~g~fry~~~~y~~ai~ 309 (354)
T KOG0024|consen 245 VTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPI------IDVALK-------E--VDLRGSFRYCNGDYPTAIE 309 (354)
T ss_pred eEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccCh------hhhhhh-------e--eeeeeeeeeccccHHHHHH
Confidence 999999999999999999999855 3333 1 112222 222222 1 22333456666 8888889
Q ss_pred HHHHhCCee
Q 018445 151 LIAEIGDMM 159 (355)
Q Consensus 151 ~i~~iG~i~ 159 (355)
+|++ |+|-
T Consensus 310 li~s-Gki~ 317 (354)
T KOG0024|consen 310 LVSS-GKID 317 (354)
T ss_pred HHHc-CCcC
Confidence 9987 6653
No 341
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=92.96 E-value=0.33 Score=46.10 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred ceEEEEecccccchhccchhhhcCC--eEEEEEEEeCCHHHHHHHHHHHhhh----cCCccccccCcchhhhhcCCCccE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISD--LVSLKFIWSRSEESAKSAAEVARKH----FADVECVWGDNGLEQIIKEDSILG 76 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~--~~~vvai~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ell~~~~~D~ 76 (355)
|||.|||.|+.-....+..|...++ ...-+.++|+++++++.....+++. ...+... .++|.+|.|++ .|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~-~Ttdr~eAl~g--ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFV-YTTDPEEAFTD--ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEE-EECCHHHHhCC--CCE
Confidence 6999999998422223333432211 1344578899999998866554433 2333222 24899999998 899
Q ss_pred EEEecCCcccHHH---HHHHHHcCC
Q 018445 77 VAVVLAGQAQVDT---SLKLLKAGK 98 (355)
Q Consensus 77 V~I~tp~~~H~~~---~~~al~~Gk 98 (355)
|+.......+... .+-.++.|.
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi 102 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGV 102 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCc
Confidence 9988766544322 245577774
No 342
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=92.96 E-value=0.36 Score=45.63 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=55.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC-------------------HHHHHHHHHHHhhhcCCccccccCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS-------------------EESAKSAAEVARKHFADVECVWGDN 63 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (355)
-+|.|||+|..|.. .+.+|...+ +.=+.++|.+ ..+++.+.+...+..|.+...+...
T Consensus 21 s~VlliG~gglGsE-ilKNLvL~G--Ig~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e 97 (425)
T cd01493 21 AHVCLLNATATGTE-ILKNLVLPG--IGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE 97 (425)
T ss_pred CeEEEEcCcHHHHH-HHHHHHHcC--CCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec
Confidence 48999999999986 677776433 3333444543 3456666666666677775444334
Q ss_pred chhhhhcC-----CCccEEEEecCCccc-HHHHHHHHHcCCeEE
Q 018445 64 GLEQIIKE-----DSILGVAVVLAGQAQ-VDTSLKLLKAGKHVI 101 (355)
Q Consensus 64 ~~~ell~~-----~~~D~V~I~tp~~~H-~~~~~~al~~GkhVl 101 (355)
+++++++. .+.|+|+.++.+... ..+...|.+.+++++
T Consensus 98 ~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI 141 (425)
T cd01493 98 SPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLL 141 (425)
T ss_pred ccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 45444331 236777766654322 334455556665543
No 343
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=92.91 E-value=0.27 Score=47.00 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=55.0
Q ss_pred eEEEEecccccchhccchhh-hcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 4 RIAILGAGIFVKTQYIPRLA-EIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~-~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
|+.|||+|..+.. . ..+. +++ .+.+++|+++.+.+.. . .++.+..-..+++.+++++.++|-|+|+.
T Consensus 126 rvLIIGag~~~~~-L-~~l~~~~~~~g~~vVGfi~~dd~~~-~--------i~gvpVlG~~~dl~~~v~~~~Id~ViIAl 194 (442)
T TIGR03013 126 RILVLGTGPRARE-I-ARLRRSSDRRGHEIVGFVPLPDEPA-Y--------VPSEHVIENGDGLVEYVLRHRIDEIVIAL 194 (442)
T ss_pred cEEEEECCHHHHH-H-HHHHHhCccCCeEEEEEEcCCcccc-c--------cCCCcccCCHHHHHHHHHhCCCCEEEEEC
Confidence 6999999998875 3 4443 332 2489999996543221 1 11333211014677788889999999999
Q ss_pred CCcccH---HHHHHHHHcCCeEEE
Q 018445 82 AGQAQV---DTSLKLLKAGKHVIQ 102 (355)
Q Consensus 82 p~~~H~---~~~~~al~~GkhVl~ 102 (355)
|..... +.+..|-+.|++|.+
T Consensus 195 p~~~~~~~~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 195 DERRGSLPVDELLECKLSGIEVVD 218 (442)
T ss_pred chhhcchHHHHHHHHHhCCCEEEE
Confidence 865553 234555556666644
No 344
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.85 E-value=0.24 Score=44.83 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHH
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAE 47 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~ 47 (355)
|.|||+|||+|.+|.. +.-.|.+.+. +|+ ++++..+..+++.+
T Consensus 1 ~~m~I~IiGaGaiG~~-~a~~L~~~G~--~V~-lv~r~~~~~~~i~~ 43 (305)
T PRK05708 1 MSMTWHILGAGSLGSL-WACRLARAGL--PVR-LILRDRQRLAAYQQ 43 (305)
T ss_pred CCceEEEECCCHHHHH-HHHHHHhCCC--CeE-EEEechHHHHHHhh
Confidence 6799999999999974 6666666543 443 45777777776654
No 345
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.70 E-value=0.36 Score=38.92 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=48.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
++.|+|.|..|+. ....++..+ .+| .|+++||-++-++.. . +... .++++++.+ .|+++-+|.+
T Consensus 25 ~vvV~GYG~vG~g-~A~~lr~~G--a~V-~V~e~DPi~alqA~~----d--Gf~v----~~~~~a~~~--adi~vtaTG~ 88 (162)
T PF00670_consen 25 RVVVIGYGKVGKG-IARALRGLG--ARV-TVTEIDPIRALQAAM----D--GFEV----MTLEEALRD--ADIFVTATGN 88 (162)
T ss_dssp EEEEE--SHHHHH-HHHHHHHTT---EE-EEE-SSHHHHHHHHH----T--T-EE----E-HHHHTTT---SEEEE-SSS
T ss_pred EEEEeCCCcccHH-HHHHHhhCC--CEE-EEEECChHHHHHhhh----c--CcEe----cCHHHHHhh--CCEEEECCCC
Confidence 6899999999986 788888776 455 788999988766554 1 3332 578898886 7888888887
Q ss_pred cc--cHHHHHHHHHcCC
Q 018445 84 QA--QVDTSLKLLKAGK 98 (355)
Q Consensus 84 ~~--H~~~~~~al~~Gk 98 (355)
.. ..++..+ |+.|.
T Consensus 89 ~~vi~~e~~~~-mkdga 104 (162)
T PF00670_consen 89 KDVITGEHFRQ-MKDGA 104 (162)
T ss_dssp SSSB-HHHHHH-S-TTE
T ss_pred ccccCHHHHHH-hcCCe
Confidence 53 3444444 55553
No 346
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.68 E-value=0.29 Score=46.23 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=49.7
Q ss_pred ceEEEEecccccchhccchhhhc-C-CeEEEEEEEeCC-HHHHHHHHHHHh----hhcCCccccccCcchhhhhcCCCcc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEI-S-DLVSLKFIWSRS-EESAKSAAEVAR----KHFADVECVWGDNGLEQIIKEDSIL 75 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-~-~~~~vvai~d~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ell~~~~~D 75 (355)
|||.|||.|+.-....+..|... + -...=+.++|+| +++++.....++ +..+.+... .++|.++.|++ .|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~-~t~d~~~al~g--ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVH-LTTDRREALEG--AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEE-EeCCHHHHhCC--CC
Confidence 69999999985332233444331 1 113445788999 888866544332 333333322 24899999998 78
Q ss_pred EEEEecCCcc
Q 018445 76 GVAVVLAGQA 85 (355)
Q Consensus 76 ~V~I~tp~~~ 85 (355)
.|+++.....
T Consensus 78 fVi~~~~vg~ 87 (419)
T cd05296 78 FVFTQIRVGG 87 (419)
T ss_pred EEEEEEeeCC
Confidence 9998865544
No 347
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.66 E-value=0.25 Score=45.03 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHH-HHHh--hhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAA-EVAR--KHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
||+|||+|.+|.. ....+.. .+..+ +.++|+++++++.-+ +... ...........++|++++ ++ .|+|+++
T Consensus 8 KI~IIGaG~vG~~-ia~~la~-~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~--aDiVI~t 81 (321)
T PTZ00082 8 KISLIGSGNIGGV-MAYLIVL-KNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG--SDVVIVT 81 (321)
T ss_pred EEEEECCCHHHHH-HHHHHHh-CCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC--CCEEEEC
Confidence 8999999999974 4433333 33236 788899998754211 1100 011111112223688654 44 8999997
Q ss_pred c
Q 018445 81 L 81 (355)
Q Consensus 81 t 81 (355)
.
T Consensus 82 a 82 (321)
T PTZ00082 82 A 82 (321)
T ss_pred C
Confidence 5
No 348
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.64 E-value=0.7 Score=38.83 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=42.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--CCccccccCcchhhhhcC--CCccEEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--ADVECVWGDNGLEQIIKE--DSILGVAV 79 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ell~~--~~~D~V~I 79 (355)
+|.-+|||. |.- -+......+....|+++ |.+++..+.+.+.++... ..+... ..|..+++.. +.+|+|++
T Consensus 43 ~vlDlG~Gt-G~~-s~~~a~~~~~~~~v~av-D~~~~~~~~a~~n~~~~g~~~~v~~~--~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 43 MILDIGCGT-GSV-TVEASLLVGETGKVYAV-DKDEKAINLTRRNAEKFGVLNNIVLI--KGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred EEEEeCCcC-CHH-HHHHHHHhCCCCEEEEE-ECCHHHHHHHHHHHHHhCCCCCeEEE--EechhhhHhhcCCCCCEEEE
Confidence 688999997 532 23333333322466655 999998887766554442 122211 1456565442 56899988
Q ss_pred ec
Q 018445 80 VL 81 (355)
Q Consensus 80 ~t 81 (355)
..
T Consensus 118 ~~ 119 (198)
T PRK00377 118 GG 119 (198)
T ss_pred CC
Confidence 53
No 349
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.44 Score=46.00 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=52.9
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||.|+|+|..|.. .+..|.+.+ .+| -++|+++.......+ +. ++....+ ....+.+. +.|+|+++..-
T Consensus 17 ~v~v~G~G~sG~a-~a~~L~~~G--~~V-~~~D~~~~~~~~~l~---~~--gi~~~~~-~~~~~~~~--~~d~vV~Spgi 84 (473)
T PRK00141 17 RVLVAGAGVSGRG-IAAMLSELG--CDV-VVADDNETARHKLIE---VT--GVADIST-AEASDQLD--SFSLVVTSPGW 84 (473)
T ss_pred eEEEEccCHHHHH-HHHHHHHCC--CEE-EEECCChHHHHHHHH---hc--CcEEEeC-CCchhHhc--CCCEEEeCCCC
Confidence 7999999999974 666676654 444 567876654433222 22 4432221 12234444 47877665433
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+...+|.++|++|+-+
T Consensus 85 ~~~~p~~~~a~~~gi~v~~~ 104 (473)
T PRK00141 85 RPDSPLLVDAQSQGLEVIGD 104 (473)
T ss_pred CCCCHHHHHHHHCCCceeeH
Confidence 33446677888999988864
No 350
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=92.54 E-value=2.2 Score=37.33 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=72.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeC----------CHHHHHHHHHHHhh-------h---cCCccccccC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR----------SEESAKSAAEVARK-------H---FADVECVWGD 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~----------~~~~~~~~~~~~~~-------~---~~~~~~~~~~ 62 (355)
.||+|.|.|..|.. ....|.+.+ .+|++|+|. |.+.++.+.+.-.+ + +|+. .+
T Consensus 39 ~~vaIqGfGnVG~~-~a~~L~e~G--akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a--~~-- 111 (254)
T cd05313 39 KRVAISGSGNVAQY-AAEKLLELG--AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTA--KY-- 111 (254)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCC--EE--
Confidence 59999999999974 566666653 899999993 44444333211000 1 1111 22
Q ss_pred cchhhhhcCCCccEEEEe-cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEE
Q 018445 63 NGLEQIIKEDSILGVAVV-LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAV 135 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~-tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v 135 (355)
-+-+++++. ++|+.+=| +.+.-+.+.+....+.+..+++|--=.....++.+++.. +|+.+..
T Consensus 112 ~~~~~~~~~-~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L~~---------rGI~vvP 175 (254)
T cd05313 112 FEGKKPWEV-PCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQ---------AGVLFAP 175 (254)
T ss_pred eCCcchhcC-CCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHH---------CCcEEEC
Confidence 356788874 58888855 556678888888777788999996322222256655433 3766654
No 351
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=92.50 E-value=1 Score=40.56 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=63.7
Q ss_pred ceEEEEecccccc-------------------hhccchhhhcCCeEEEEEEEeCCHHHHHH-HHHHHhhhcCCccccccC
Q 018445 3 PRIAILGAGIFVK-------------------TQYIPRLAEISDLVSLKFIWSRSEESAKS-AAEVARKHFADVECVWGD 62 (355)
Q Consensus 3 ~rigiiG~G~~~~-------------------~~~~~~l~~~~~~~~vvai~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 62 (355)
|||.|-|+|+.-- ......|.+.+ ++| .++|+++++.+. ..+.+.+. ++...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV-~V~Drnrsa~e~e~~e~Laea--GA~~A--- 72 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDV-VLAEPNREFMSDDLWKKVEDA--GVKVV--- 72 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEE-EEEeCChhhhhhhhhHHHHHC--CCeec---
Confidence 6889999997421 11223333322 566 588998876532 11111123 44332
Q ss_pred cchhhhhcCCCccEEEEecCCcccH-HHHHHH---HHcCCeEEEecCCCCCHHHHHHHHHH
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQV-DTSLKL---LKAGKHVIQEKPAAANISEIENALSR 119 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H~-~~~~~a---l~~GkhVl~EKP~a~~~~e~~~l~~~ 119 (355)
++..++.++ .|+|++++|+..+. +++..+ +..| +++|+= -|.++....++++-
T Consensus 73 aS~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~~G-aIVID~-STIsP~t~~~~~e~ 129 (341)
T TIGR01724 73 SDDKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVPEN-AVICNT-CTVSPVVLYYSLEK 129 (341)
T ss_pred CCHHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCCCC-CEEEEC-CCCCHHHHHHHHHH
Confidence 788899987 79999999998886 443322 2334 366664 47777777777766
No 352
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.45 E-value=0.43 Score=39.97 Aligned_cols=77 Identities=21% Similarity=0.098 Sum_probs=47.8
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc-Ccch---hhhhcCCCccEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWG-DNGL---EQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~ell~~~~~D~V 77 (355)
.++.|+|. |.+|.. ....+.+.+ .+|+ +++|+.++++.+.+.....+ +...... ..+. .+.+.+ .|+|
T Consensus 29 ~~vlVlGgtG~iG~~-~a~~l~~~g--~~V~-l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~diV 101 (194)
T cd01078 29 KTAVVLGGTGPVGQR-AAVLLAREG--ARVV-LVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKG--ADVV 101 (194)
T ss_pred CEEEEECCCCHHHHH-HHHHHHHCC--CEEE-EEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhc--CCEE
Confidence 48999995 999975 677776644 4554 45899999888776432111 1111100 1233 355544 8999
Q ss_pred EEecCCccc
Q 018445 78 AVVLAGQAQ 86 (355)
Q Consensus 78 ~I~tp~~~H 86 (355)
+.+||....
T Consensus 102 i~at~~g~~ 110 (194)
T cd01078 102 FAAGAAGVE 110 (194)
T ss_pred EECCCCCce
Confidence 999987775
No 353
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=92.43 E-value=2.3 Score=37.05 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=68.8
Q ss_pred EEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCCcccHHHHHHHHH---cCCeEEEecCC
Q 018445 30 SLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLK---AGKHVIQEKPA 106 (355)
Q Consensus 30 ~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~---~GkhVl~EKP~ 106 (355)
+| -+++|++++++.+++ ++ ++... .+.+++.++ .|+|++|++|..-.++... ++ .+.++++===-
T Consensus 11 ~I-~v~~R~~e~~~~l~~---~~--g~~~~---~~~~e~~~~--aDiIiLaVkP~~i~~vl~~-l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 11 DI-IVINRSPEKLAALAK---EL--GIVAS---SDAQEAVKE--ADVVFLAVKPQDLEEVLSE-LKSEKGKDKLLISIAA 78 (245)
T ss_pred eE-EEEcCCHHHHHHHHH---Hc--CcEEe---CChHHHHhh--CCEEEEEeCHHHHHHHHHH-HhhhccCCCEEEEecC
Confidence 44 588999999888766 33 33322 677888775 7999999997666665544 33 23345555555
Q ss_pred CCCHHHHHHHHHH----hhcc-CC--CCCCCCeEEEEecccCch-HHHHHHHHHHHhCCeeEEE
Q 018445 107 AANISEIENALSR----YNSI-CP--DPPGQPIWAVAENYRFEP-AFVECKKLIAEIGDMMSVQ 162 (355)
Q Consensus 107 a~~~~e~~~l~~~----a~~~-~~--~~~~~~~~~v~~~~r~~p-~~~~~k~~i~~iG~i~~v~ 162 (355)
+.++++.++++.- ++-- +. ...+|...+ .+.....+ ....+++++..+|++..+.
T Consensus 79 gi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~-~~~~~~~~~~~~~v~~lf~~~G~~~~v~ 141 (245)
T TIGR00112 79 GVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAI-AANANVSEEDRALVLALFKAVGEVVELP 141 (245)
T ss_pred CCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 7888888776531 1100 00 000122221 12222222 2455666666699988775
No 354
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.41 E-value=0.39 Score=45.88 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=52.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||.|||+|..|.. -+..|....++++|+ ++|..+... . .+..+ . ++....+..+. +.+. ++|.|+++..-
T Consensus 9 ~v~viG~G~sG~s-~~~~l~~~~~~~~v~-~~D~~~~~~-~-~~~l~-~--g~~~~~g~~~~-~~~~--~~d~vV~SpgI 78 (438)
T PRK04663 9 NVVVVGLGITGLS-VVKHLRKYQPQLTVK-VIDTRETPP-G-QEQLP-E--DVELHSGGWNL-EWLL--EADLVVTNPGI 78 (438)
T ss_pred eEEEEeccHHHHH-HHHHHHhcCCCCeEE-EEeCCCCch-h-HHHhh-c--CCEEEeCCCCh-HHhc--cCCEEEECCCC
Confidence 7999999999976 566666654335664 578654321 1 11111 1 33322211133 3343 47877665544
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+...+|.++|++|+.|
T Consensus 79 ~~~~p~~~~a~~~gi~i~~~ 98 (438)
T PRK04663 79 ALATPEIQQVLAAGIPVVGD 98 (438)
T ss_pred CCCCHHHHHHHHCCCcEEEH
Confidence 44556777889999998865
No 355
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.34 E-value=2.8 Score=36.98 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=51.5
Q ss_pred chhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 64 GLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 64 ~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
+.+.+ ++- +|++-|++.+-.+.++.+++.+.||+|++.++++.+++|....++..+..|
T Consensus 103 ~~~~l-~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~G 161 (266)
T PRK13398 103 DVEEV-ADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEG 161 (266)
T ss_pred hHHHH-HHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 34444 434 899999999999999999999999999999999999999999998888753
No 356
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=92.21 E-value=1.6 Score=41.90 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=65.7
Q ss_pred ccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEecCCcccHHHHHHHHHc
Q 018445 18 YIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVLAGQAQVDTSLKLLKA 96 (355)
Q Consensus 18 ~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~tp~~~H~~~~~~al~~ 96 (355)
...+|.+++ ++| .++|+++++.+.+.+.. ....++.. ..|++|+.+. +.+|+|+++.|+....+-+..-|..
T Consensus 5 mA~nL~~~G--~~V-~v~nrt~~~~~~l~~~~-g~~~g~~~---~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 5 LALNIASHG--YTV-AVYNRTPEKTDEFLAEE-GKGKKIVP---AYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred HHHHHHhCC--CeE-EEECCCHHHHHHHHHhh-CCCCCeEe---eCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 455666654 676 68999999999987621 00012332 2799999985 3589999999999876666443333
Q ss_pred C---CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 97 G---KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 97 G---khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+ -.|+++= -+.+..++.++.+.+++.
T Consensus 78 ~l~~GdiiID~-gn~~~~~t~~~~~~l~~~ 106 (459)
T PRK09287 78 LLEKGDIIIDG-GNSNYKDTIRREKELAEK 106 (459)
T ss_pred cCCCCCEEEEC-CCCCHHHHHHHHHHHHhc
Confidence 2 2477774 246788888888877773
No 357
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=92.13 E-value=2.3 Score=38.87 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=51.0
Q ss_pred chhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 64 GLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 64 ~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+++.+.+ - +|++-|++.+-.++++.+++.+.||+|++.++++.|++|....++.....
T Consensus 169 ~~~~l~~-~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~ 226 (335)
T PRK08673 169 DVELVAE-Y-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAE 226 (335)
T ss_pred HHHHHHH-h-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 3444443 3 89999999999999999999999999999999999999999998888875
No 358
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.06 E-value=0.25 Score=43.69 Aligned_cols=72 Identities=21% Similarity=0.145 Sum_probs=44.8
Q ss_pred EEEEec-ccccchhccchhhhcC--CeEEEEEEEeCCHHHHHHHHHHHhhhc-C--CccccccCcchhhhhcCCCccEEE
Q 018445 5 IAILGA-GIFVKTQYIPRLAEIS--DLVSLKFIWSRSEESAKSAAEVARKHF-A--DVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 5 igiiG~-G~~~~~~~~~~l~~~~--~~~~vvai~d~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
|+|||+ |.+|.. .+..+...+ . ..=+.++|+++++++......+... + ..... .++|+++.+++ .|+|+
T Consensus 1 I~IIGagG~vG~~-ia~~l~~~~~~~-~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~--aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPA-LAFGLADGSVLL-AIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKD--ADVVI 75 (263)
T ss_pred CEEECCCChHHHH-HHHHHHhCCCCc-ceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCC--CCEEE
Confidence 689999 888875 566665544 3 2334677999988877665443321 1 11111 13666666666 89999
Q ss_pred Eec
Q 018445 79 VVL 81 (355)
Q Consensus 79 I~t 81 (355)
++.
T Consensus 76 ~t~ 78 (263)
T cd00650 76 ITA 78 (263)
T ss_pred ECC
Confidence 965
No 359
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.04 E-value=0.5 Score=42.23 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeC-------------------CHHHHHHHHHHHhhhcCCccccccCcc
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR-------------------SEESAKSAAEVARKHFADVECVWGDNG 64 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (355)
||.|||+|..|.. .+..|...+ +.=+.++|. ...+++.+++..++..|++........
T Consensus 1 kVlVVGaGGlG~e-ilknLal~G--vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCE-LLKNLALSG--FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHH-HHHHHHHcC--CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 6899999999986 788887654 333344454 335666666666666666543321112
Q ss_pred h----hhhhcCCCccEEEEecCCcccHHHH
Q 018445 65 L----EQIIKEDSILGVAVVLAGQAQVDTS 90 (355)
Q Consensus 65 ~----~ell~~~~~D~V~I~tp~~~H~~~~ 90 (355)
+ +++++. .|+|+.++.+.....++
T Consensus 78 i~~~~~~f~~~--fdvVi~alDn~~aR~~i 105 (291)
T cd01488 78 IQDKDEEFYRQ--FNIIICGLDSIEARRWI 105 (291)
T ss_pred cCchhHHHhcC--CCEEEECCCCHHHHHHH
Confidence 2 344443 78888887665433333
No 360
>PLN02477 glutamate dehydrogenase
Probab=91.90 E-value=1.1 Score=42.23 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=65.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC----------HHHHHHHHHHHh--hhcCCccccccCcchhhhhc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS----------EESAKSAAEVAR--KHFADVECVWGDNGLEQIIK 70 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ell~ 70 (355)
.||+|.|+|+.|.. .+..|.+.+ .+|+||+|.+ .+.+.+..+... ..+++.. + -+.++++.
T Consensus 207 ~~VaIqGfGnVG~~-~A~~L~e~G--akVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~--~--i~~~e~l~ 279 (410)
T PLN02477 207 QTFVIQGFGNVGSW-AAQLIHEKG--GKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD--P--IDPDDILV 279 (410)
T ss_pred CEEEEECCCHHHHH-HHHHHHHcC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce--E--ecCcccee
Confidence 58999999999985 666666653 8999999987 665544333110 0122221 1 25577777
Q ss_pred CCCccEEEEe-cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH
Q 018445 71 EDSILGVAVV-LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALS 118 (355)
Q Consensus 71 ~~~~D~V~I~-tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~ 118 (355)
. ++|+++=| +.+.-+.+.+.. -+..+++|--=...-.++.++++
T Consensus 280 ~-~~DvliP~Al~~~I~~~na~~---i~ak~I~egAN~p~t~ea~~~L~ 324 (410)
T PLN02477 280 E-PCDVLIPAALGGVINKENAAD---VKAKFIVEAANHPTDPEADEILR 324 (410)
T ss_pred c-cccEEeeccccccCCHhHHHH---cCCcEEEeCCCCCCCHHHHHHHH
Confidence 4 68988866 455666666655 36788899633223335555553
No 361
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.90 E-value=0.16 Score=48.73 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=65.0
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.|+.|||+|..|.. .++.+...+. ..+||+.|.++...-.- .-|++. ++..++.+++++..++-++|+-|
T Consensus 117 ~r~lIiGAG~ag~~-l~r~~~~~~~-~~pV~fiDdd~~~~g~~-------i~Gv~V-~g~~~i~~~v~~~~~~~iiiAip 186 (588)
T COG1086 117 IRLLIIGAGSAGDL-LLRALRRDPE-YTPVAFLDDDPDLTGMK-------IRGVPV-LGRIEIERVVEELGIQLILIAIP 186 (588)
T ss_pred CceEEEcCchHHHH-HHHHHHhCCC-cceEEEECCChhhcCCE-------Eeceee-echhHHHHHHHHcCCceEEEecC
Confidence 48999999999974 8999998888 99999999998654321 124432 33234899999999999999999
Q ss_pred CcccHHH---HHHHHHcCCeE
Q 018445 83 GQAQVDT---SLKLLKAGKHV 100 (355)
Q Consensus 83 ~~~H~~~---~~~al~~GkhV 100 (355)
...+.+. ...+-+.|..|
T Consensus 187 s~~~~~~~~i~~~l~~~~~~v 207 (588)
T COG1086 187 SASQEERRRILLRLARTGIAV 207 (588)
T ss_pred CCCHHHHHHHHHHHHhcCCcE
Confidence 9877554 44555555443
No 362
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.75 E-value=0.39 Score=38.25 Aligned_cols=83 Identities=22% Similarity=0.124 Sum_probs=45.7
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCC-ccccccCcchhh-hhcCCCccEEEEec
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FAD-VECVWGDNGLEQ-IIKEDSILGVAVVL 81 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~e-ll~~~~~D~V~I~t 81 (355)
|+|+|+|.+|.- +...|.+.+ .+| .++++.+ +.+.+.+..-.. .+. -........... ......+|.|+||+
T Consensus 1 I~I~G~GaiG~~-~a~~L~~~g--~~V-~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSL-YAARLAQAG--HDV-TLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHH-HHHHHHHTT--CEE-EEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEECcCHHHHH-HHHHHHHCC--Cce-EEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
Confidence 789999999974 777777644 454 5557776 666655421000 111 000000000111 12335699999999
Q ss_pred CCcccHHHHHH
Q 018445 82 AGQAQVDTSLK 92 (355)
Q Consensus 82 p~~~H~~~~~~ 92 (355)
......+.+..
T Consensus 76 Ka~~~~~~l~~ 86 (151)
T PF02558_consen 76 KAYQLEQALQS 86 (151)
T ss_dssp SGGGHHHHHHH
T ss_pred cccchHHHHHH
Confidence 88877665555
No 363
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=91.70 E-value=1.5 Score=34.05 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=41.3
Q ss_pred cchhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHH
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSR 119 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~ 119 (355)
.|+.|+-+ .+|+|.|.-++..-.+++.++++.|..|+.=-+-..+.+ +.+..+.
T Consensus 65 ~sL~dIpe--~IDiVdvFR~~e~~~~i~~eal~~~~kv~W~QlGi~n~e-a~~~~~~ 118 (140)
T COG1832 65 PSLADIPE--PIDIVDVFRRSEAAPEVAREALEKGAKVVWLQLGIRNEE-AAEKARD 118 (140)
T ss_pred hcHHhCCC--CCcEEEEecChhhhHHHHHHHHhhCCCeEEEecCcCCHH-HHHHHHH
Confidence 78888875 499999999999999999999999966666555555444 5444433
No 364
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=91.69 E-value=0.34 Score=46.35 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=42.1
Q ss_pred EEEEecCCcccHHHHHHHHHcC----CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAG----KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~G----khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+++.++||..-..++...-+.| .-|.+|||++.|++.|++|.+...+.
T Consensus 121 ifYLA~PP~~f~~i~~~l~~~~l~~~~RiViEKPFG~Dl~SA~~Ln~~l~~~ 172 (484)
T PRK12854 121 VHYLAVPPSAFLDVTRALGEAGLAEGSRVVMEKPFGTDLASAEALNAAVHEV 172 (484)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999888888777776 47999999999999999999877664
No 365
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=91.44 E-value=1 Score=41.87 Aligned_cols=145 Identities=20% Similarity=0.089 Sum_probs=90.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|||.|||.|..-.. ..-.|.+.+. +.=+.++-.|+..+....- . +.........+-++..+.++|+|+|.--
T Consensus 1 mkVLviGsGgREHA-iA~~la~s~~-v~~~~~apgN~G~a~~~~~----~--~~~~~~~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 1 MKVLVIGSGGREHA-LAWKLAQSPL-VLYVYVAPGNPGTALEAYL----V--NIEIDTDHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred CeEEEEcCCchHHH-HHHHHhcCCc-eeEEEEeCCCCccchhhhh----c--cCccccCHHHHHHHHHHcCCCEEEECCc
Confidence 79999999964321 3344445554 5555666666666542110 1 2221100134555566788999999988
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHH-HHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCeeEE
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEIENA-LSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDMMSV 161 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i~~v 161 (355)
..+-.-++-..-++|.+||==+=-+.-++..+.. .++.++ ++++ .+.-..|. ....++..|++.|...-|
T Consensus 73 ~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k------~~IP--ta~y~~f~-~~e~a~ayi~~~g~piVV 143 (428)
T COG0151 73 APLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKK------YGIP--TAEYEVFT-DPEEAKAYIDEKGAPIVV 143 (428)
T ss_pred HHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHH------cCCC--cccccccC-CHHHHHHHHHHcCCCEEE
Confidence 8888888889899999998543333333333332 345555 5777 55555566 788888888888887766
Q ss_pred EEE
Q 018445 162 QVI 164 (355)
Q Consensus 162 ~~~ 164 (355)
...
T Consensus 144 Kad 146 (428)
T COG0151 144 KAD 146 (428)
T ss_pred ecc
Confidence 654
No 366
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=91.40 E-value=0.29 Score=40.88 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=50.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~tp 82 (355)
++.|+|+|..|+. .++.|.+. ++++++++|.++.+... ...+.+. + .+.+++... .+.+.++++.+
T Consensus 1 ~~~I~Gag~~g~~-~~~~l~~~--g~~vvgfid~~~~~~~~-------~i~g~pv-l--g~~~~l~~~~~~~~~~iiai~ 67 (201)
T TIGR03570 1 KLVIIGAGGHGRV-VADIAEDS--GWEIVGFLDDNPALQGT-------SVDGLPV-L--GGDEDLLRYPPDEVDLVVAIG 67 (201)
T ss_pred CEEEEcCCHHHHH-HHHHHHhC--CCEEEEEEcCCccccCc-------ccCCccE-E--CCHHHHhhhcccccEEEEEcC
Confidence 5789999999985 77777754 38999999987654222 1224442 2 233333321 23688888886
Q ss_pred C-cccHHHHHHHHHcCC
Q 018445 83 G-QAQVDTSLKLLKAGK 98 (355)
Q Consensus 83 ~-~~H~~~~~~al~~Gk 98 (355)
. ..+.++...+.+.|.
T Consensus 68 ~~~~~~~i~~~l~~~g~ 84 (201)
T TIGR03570 68 DNKLRRRLFEKLKAKGY 84 (201)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 4 445555555555554
No 367
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.33 E-value=0.84 Score=34.02 Aligned_cols=71 Identities=17% Similarity=0.026 Sum_probs=45.4
Q ss_pred eEEEEecccccchhccchhhh-cCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCCccccccCcch-hhhhcCCCccEEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAE-ISDLVSLKFIWSRSEESAKSAAEVARKH--FADVECVWGDNGL-EQIIKEDSILGVAV 79 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~-~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~ell~~~~~D~V~I 79 (355)
||.-||||. |. +.-.+.+ .++ .++++| |.+++..+.+.+...+. .+.+. +...|+ .+.-..+.+|+|++
T Consensus 4 ~vLDlGcG~-G~--~~~~l~~~~~~-~~v~gv-D~s~~~~~~a~~~~~~~~~~~~i~--~~~~d~~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 4 RVLDLGCGT-GR--LSIALARLFPG-ARVVGV-DISPEMLEIARERAAEEGLSDRIT--FVQGDAEFDPDFLEPFDLVIC 76 (112)
T ss_dssp EEEEETTTT-SH--HHHHHHHHHTT-SEEEEE-ESSHHHHHHHHHHHHHTTTTTTEE--EEESCCHGGTTTSSCEEEEEE
T ss_pred EEEEEcCcC-CH--HHHHHHhcCCC-CEEEEE-eCCHHHHHHHHHHHHhcCCCCCeE--EEECccccCcccCCCCCEEEE
Confidence 788899996 53 3334444 455 788777 99999999888765222 23332 222566 23333356999998
Q ss_pred ec
Q 018445 80 VL 81 (355)
Q Consensus 80 ~t 81 (355)
..
T Consensus 77 ~~ 78 (112)
T PF12847_consen 77 SG 78 (112)
T ss_dssp CS
T ss_pred CC
Confidence 77
No 368
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.29 E-value=0.5 Score=38.15 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=69.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhh-hcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQI-IKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-l~~~~~D~V~I~tp 82 (355)
||.|||.|.+|.+ -+..|.+.+ .+|+-| + ++..+.+.+. +.+... ...|++- + .+.|+|+.+|.
T Consensus 15 ~vlVvGGG~va~r-ka~~Ll~~g--a~V~VI-s--p~~~~~l~~l-----~~i~~~--~~~~~~~dl--~~a~lViaaT~ 79 (157)
T PRK06719 15 VVVIIGGGKIAYR-KASGLKDTG--AFVTVV-S--PEICKEMKEL-----PYITWK--QKTFSNDDI--KDAHLIYAATN 79 (157)
T ss_pred EEEEECCCHHHHH-HHHHHHhCC--CEEEEE-c--CccCHHHHhc-----cCcEEE--ecccChhcC--CCceEEEECCC
Confidence 8999999999975 566776654 455433 3 3333333321 111110 1222221 2 34799999998
Q ss_pred CcccHHHHHHHHHcCCeEEEecCCCCCHHHHHH-HHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEKPAAANISEIEN-ALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~-l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 154 (355)
+..--..+.++.+++..|- .+.+++.+.- +-+..++ .+..+.|..+-.---..+.+|+.|++
T Consensus 80 d~e~N~~i~~~a~~~~~vn----~~d~~~~~~f~~pa~v~~------~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 80 QHAVNMMVKQAAHDFQWVN----VVSDGTESSFHTPGVIRN------DEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CHHHHHHHHHHHHHCCcEE----ECCCCCcCcEEeeeEEEE------CCeEEEEECCCcChHHHHHHHHHHHH
Confidence 8765555555555543222 1222222222 2234444 47788887777655555788888875
No 369
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.28 E-value=1.2 Score=40.18 Aligned_cols=71 Identities=24% Similarity=0.168 Sum_probs=39.2
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh---c-CCccccccCcchhhhhcCCCccEEEEe
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH---F-ADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
|+|||+|.+|.. ....+...+- .+ +.++|+++++++..+-..... . .... ...++|+++ +.+ .|+|+++
T Consensus 1 I~IIGaG~vG~~-ia~~la~~~l-~e-V~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~~t~d~~~-l~d--ADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGAT-LAQLLALKEL-GD-VVLLDIVEGLPQGKALDISQAAPILGSDTK-VTGTNDYED-IAG--SDVVVIT 73 (300)
T ss_pred CEEECCCHHHHH-HHHHHHhCCC-cE-EEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EEEcCCHHH-hCC--CCEEEEe
Confidence 689999999975 4444444332 24 467799987654322111111 0 1111 111256776 444 7999987
Q ss_pred cC
Q 018445 81 LA 82 (355)
Q Consensus 81 tp 82 (355)
..
T Consensus 74 ~g 75 (300)
T cd01339 74 AG 75 (300)
T ss_pred cC
Confidence 53
No 370
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.25 E-value=0.7 Score=39.21 Aligned_cols=129 Identities=11% Similarity=0.062 Sum_probs=75.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|.|||.|..+.+ =++.|.+.+ ..|+-+++...+..+.+.+..+ ..-+... -+.+++ .+ +++|+++|++
T Consensus 14 ~VlvvGgG~va~r-Ka~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~--i~~~~~~---~~~~~~-~~--~~lviaAt~d 82 (210)
T COG1648 14 KVLVVGGGSVALR-KARLLLKAG--ADVTVVSPEFEPELKALIEEGK--IKWIERE---FDAEDL-DD--AFLVIAATDD 82 (210)
T ss_pred EEEEECCCHHHHH-HHHHHHhcC--CEEEEEcCCccHHHHHHHHhcC--cchhhcc---cChhhh-cC--ceEEEEeCCC
Confidence 7999999999976 566666655 4666665555455555554211 0011111 122222 22 8999999999
Q ss_pred -cccHHHHHHHHHcCCeEEE-ecCCCCCHHHHHHHH-HHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH
Q 018445 84 -QAQVDTSLKLLKAGKHVIQ-EKPAAANISEIENAL-SRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 84 -~~H~~~~~~al~~GkhVl~-EKP~a~~~~e~~~l~-~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 154 (355)
..-..++..|-++++.|-+ ++|-- +.=+. ...++ ..+.+.|...-.---..+.+++.|.+
T Consensus 83 ~~ln~~i~~~a~~~~i~vNv~D~p~~-----~~f~~Pa~~~r------~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 83 EELNERIAKAARERRILVNVVDDPEL-----CDFIFPAIVDR------GPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHHHHHHHHhCCceeccCCccc-----Cceecceeecc------CCeEEEEECCCCChHHHHHHHHHHHH
Confidence 5677788888888987653 44432 22222 22333 35555554444434445677888876
No 371
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=91.23 E-value=0.64 Score=41.86 Aligned_cols=95 Identities=22% Similarity=0.098 Sum_probs=62.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccc----
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVW---- 60 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~---- 60 (355)
+|-|||+|+-|.- .++.|.+.+ +.=.++.|-|. .+++.++...++..|.+....
T Consensus 68 ~VLVVGaGGLGcP-a~~YLaaaG--vG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~ 144 (427)
T KOG2017|consen 68 SVLVVGAGGLGCP-AAQYLAAAG--VGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF 144 (427)
T ss_pred cEEEEccCCCCCH-HHHHHHHcC--CCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence 6899999999975 677777544 33335555532 334444444444545543211
Q ss_pred -cCcchhhhhcCCCccEEEEecCC-cccHHHHHHHHHcCCeEEEe
Q 018445 61 -GDNGLEQIIKEDSILGVAVVLAG-QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 61 -~~~~~~ell~~~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl~E 103 (355)
..++..+++.. +|+|.-||.+ .++|-+.-.|...||++.+-
T Consensus 145 L~~sNa~~Ii~~--YdvVlDCTDN~~TRYLisD~CVlLgkpLVSg 187 (427)
T KOG2017|consen 145 LSSSNAFDIIKQ--YDVVLDCTDNVPTRYLISDVCVLLGKPLVSG 187 (427)
T ss_pred ccchhHHHHhhc--cceEEEcCCCccchhhhhhHHHHcCCccccc
Confidence 01345555554 9999999988 58899999999999987654
No 372
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.12 E-value=0.64 Score=44.07 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=53.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.||.|+|+|.-|.. ..+.|.+.+ .+| .++|.++.. +..... ....+++....+ ...+ ....+.|+|+++=-
T Consensus 8 ~kv~V~GLG~sG~a-~a~~L~~~G--~~v-~v~D~~~~~-~~~~~~-~~~~~~i~~~~g--~~~~-~~~~~~d~vV~SPG 78 (448)
T COG0771 8 KKVLVLGLGKSGLA-AARFLLKLG--AEV-TVSDDRPAP-EGLAAQ-PLLLEGIEVELG--SHDD-EDLAEFDLVVKSPG 78 (448)
T ss_pred CEEEEEecccccHH-HHHHHHHCC--CeE-EEEcCCCCc-cchhhh-hhhccCceeecC--ccch-hccccCCEEEECCC
Confidence 58999999999975 778888765 566 455655554 211110 012234443321 2222 22234777776532
Q ss_pred C-cccHHHHHHHHHcCCeEEEe
Q 018445 83 G-QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~-~~H~~~~~~al~~GkhVl~E 103 (355)
- ..|. ++.+|.++|.+|+.|
T Consensus 79 i~~~~p-~v~~A~~~gi~i~~d 99 (448)
T COG0771 79 IPPTHP-LVEAAKAAGIEIIGD 99 (448)
T ss_pred CCCCCH-HHHHHHHcCCcEEeH
Confidence 2 3444 888899999999976
No 373
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.09 E-value=1.1 Score=42.87 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=56.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC-cchhhhhc--CCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD-NGLEQIIK--EDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ell~--~~~~D~V~I 79 (355)
.+|.|+|+|.+|.. ....|.+.+ .++ -+.|.++++.+.+.+. +++....++. ++.+.|.+ -.+.|+|++
T Consensus 232 ~~iiIiG~G~~g~~-l~~~L~~~~--~~v-~vid~~~~~~~~~~~~----~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGGGNIGYY-LAKLLEKEG--YSV-KLIERDPERAEELAEE----LPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCC--CeE-EEEECCHHHHHHHHHH----CCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 58999999999986 677777654 455 4558999988887652 1233333322 23333322 256899999
Q ss_pred ecCCcccH-HHHHHHHHcC-CeEEEe
Q 018445 80 VLAGQAQV-DTSLKLLKAG-KHVIQE 103 (355)
Q Consensus 80 ~tp~~~H~-~~~~~al~~G-khVl~E 103 (355)
++++..-- ..+..|-+.| ++|+..
T Consensus 304 ~~~~~~~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 304 LTNDDEANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred CCCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 98875332 2222233334 456654
No 374
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=0.83 Score=43.87 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=53.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHH-HHHHHHHHHhhhcCCccccccC-cch---hhhhcCCCccEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEE-SAKSAAEVARKHFADVECVWGD-NGL---EQIIKEDSILGVA 78 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~---~ell~~~~~D~V~ 78 (355)
||.|||+|..|.. ....|.+.+ .+| .++|..+. ..+...+..+.. ++....+. .++ ++.+.+ .|+|+
T Consensus 2 ~v~viG~G~sG~s-~a~~l~~~G--~~V-~~~D~~~~~~~~~~~~~l~~~--gi~~~~g~~~~~~~~~~~~~~--~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIA-AARLLKAQG--WEV-VVSDRNDSPELLERQQELEQE--GITVKLGKPLELESFQPWLDQ--PDLVV 73 (459)
T ss_pred eEEEEccCHHHHH-HHHHHHHCC--CEE-EEECCCCchhhHHHHHHHHHc--CCEEEECCccchhhhhHHhhc--CCEEE
Confidence 7999999999986 466666654 565 45676543 222211111122 33322111 111 134443 78888
Q ss_pred EecCCcccHHHHHHHHHcCCeEEEe
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl~E 103 (355)
++..-....+...+|.+.|++|+-+
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 74 VSPGIPWDHPTLVELRERGIEVIGE 98 (459)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEh
Confidence 8655555667788889999998765
No 375
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.86 E-value=0.4 Score=44.67 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=43.8
Q ss_pred CceEEEEec-ccccchhccchhhhcCC-----eEEEEEE-EeCCHHHHHHHHHHHhhhc-CCcc-ccccCcchhhhhcCC
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISD-----LVSLKFI-WSRSEESAKSAAEVARKHF-ADVE-CVWGDNGLEQIIKED 72 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~-----~~~vvai-~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~ell~~~ 72 (355)
++||+|||+ |++|.. .+..|...+- .+.|+-+ +|++.++++..+-...... |-.. .....++|+++-+
T Consensus 44 p~KV~IIGAaG~VG~~-~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd-- 120 (387)
T TIGR01757 44 TVNVAVSGAAGMISNH-LLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED-- 120 (387)
T ss_pred CeEEEEECCCcHHHHH-HHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC--
Confidence 689999999 999975 5655553221 1344444 5888888877554322211 2111 1111245555544
Q ss_pred CccEEEEec
Q 018445 73 SILGVAVVL 81 (355)
Q Consensus 73 ~~D~V~I~t 81 (355)
.|+|+|+.
T Consensus 121 -aDIVVitA 128 (387)
T TIGR01757 121 -ADWALLIG 128 (387)
T ss_pred -CCEEEECC
Confidence 79999974
No 376
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=90.77 E-value=2.6 Score=38.29 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=67.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~t 81 (355)
.+||+||++-||+. .+-++.. .++.| .++.|...+...+.+.-.+ +. ..++..|+|||... ..+-.|++..
T Consensus 7 ~digLiGLaVMGqn-LiLN~~d--~Gf~v-~~yNRT~skvD~flaneak---~~-~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQN-LILNIAD--KGFTV-CAYNRTTSKVDEFLANEAK---GT-KIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhh-hhhcccc--cCceE-EEeccchHhHHHHHHHhhc---CC-cccCCCCHHHHHHhcCCCcEEEEEe
Confidence 68999999999987 4444444 33777 5668888887776542212 11 12234799999775 3466777776
Q ss_pred CCcccHHHHHHHHHcC---CeEEEecCCCCCHHHHHHHHHHhhc
Q 018445 82 AGQAQVDTSLKLLKAG---KHVIQEKPAAANISEIENALSRYNS 122 (355)
Q Consensus 82 p~~~H~~~~~~al~~G---khVl~EKP~a~~~~e~~~l~~~a~~ 122 (355)
-...-.+.....|..- -.|+++--=+.-.+.-++..+++++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~ 122 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKK 122 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhc
Confidence 6655555555554432 2466665444444445555555554
No 377
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=90.76 E-value=1.5 Score=43.02 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=62.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEE-EEeCCHH---HHHHHHHHHhhhcCCccccc----cCcchhhhhcCCCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKF-IWSRSEE---SAKSAAEVARKHFADVECVW----GDNGLEQIIKEDSI 74 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vva-i~d~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~ell~~~~~ 74 (355)
-||+|+|+|.++.. .+-.|..++- -.+.+ ++|..+. |..++++.++++.+++.... ...++.++++. .
T Consensus 130 akVlVlG~Gg~~s~-lv~sL~~sG~-~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~ 205 (637)
T TIGR03693 130 AKILAAGSGDFLTK-LVRSLIDSGF-PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEP--A 205 (637)
T ss_pred ccEEEEecCchHHH-HHHHHHhcCC-CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcC--C
Confidence 48999999999975 7778887654 34533 2344332 22344555555555542211 12567777765 8
Q ss_pred cEEEEecCCcccH---HHHHHHHHcCCeEEEecCC
Q 018445 75 LGVAVVLAGQAQV---DTSLKLLKAGKHVIQEKPA 106 (355)
Q Consensus 75 D~V~I~tp~~~H~---~~~~~al~~GkhVl~EKP~ 106 (355)
|.|+..+.+..+. .+-.+|++.|++.+.=||.
T Consensus 206 DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~ 240 (637)
T TIGR03693 206 DWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICL 240 (637)
T ss_pred cEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEc
Confidence 9999998877655 3446888999765554443
No 378
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=90.76 E-value=0.74 Score=41.86 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=63.2
Q ss_pred eEEEEecccccchhccchhhhcC-CeEEEEEEEeC-CHHHHHHHHHHHhhh--cCC-ccc------ccc---------Cc
Q 018445 4 RIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSR-SEESAKSAAEVARKH--FAD-VEC------VWG---------DN 63 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~-~~~~~~~~~~~~~~~--~~~-~~~------~~~---------~~ 63 (355)
||||-|.|+||+. .++.+.+.+ ++++||+|-|. +++.+..+.+.=.-+ +++ +.. .+. ..
T Consensus 1 ~i~INGfGRIGr~-~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRL-VLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHH-HHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 7999999999985 677765543 34999999996 333333322200000 110 100 000 01
Q ss_pred chhhh-hcCCCccEEEEecCCcccHHHHHHHHHcC-CeEEEecC
Q 018445 64 GLEQI-IKEDSILGVAVVLAGQAQVDTSLKLLKAG-KHVIQEKP 105 (355)
Q Consensus 64 ~~~el-l~~~~~D~V~I~tp~~~H~~~~~~al~~G-khVl~EKP 105 (355)
+++++ ..+.++|+|+=||......+.+..++++| |-|.+-=|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC
Confidence 22322 22237999999999999999999999999 67777666
No 379
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=90.70 E-value=0.79 Score=48.21 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=54.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCH-------------------HHHHHHHHHHhhhcCCccccccCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSE-------------------ESAKSAAEVARKHFADVECVWGDN 63 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 63 (355)
-||.|||+|+.|.. .+.+|...+ +.=+.++|.+. .|++.++++.++..|.+.......
T Consensus 25 s~VLIiG~gGLG~E-iaKnL~laG--Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 101 (1008)
T TIGR01408 25 SNVLISGMGGLGLE-IAKNLVLAG--VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV 101 (1008)
T ss_pred CcEEEECCCHHHHH-HHHHHHHcC--CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence 48999999999986 777777654 44556667543 456666666666666665433212
Q ss_pred ch-hhhhcCCCccEEEEecCCccc-HHHHHHHHHcC
Q 018445 64 GL-EQIIKEDSILGVAVVLAGQAQ-VDTSLKLLKAG 97 (355)
Q Consensus 64 ~~-~ell~~~~~D~V~I~tp~~~H-~~~~~~al~~G 97 (355)
.+ ++++.. .|+|+.++.+... ..+-..|.+.|
T Consensus 102 ~l~~e~l~~--fdvVV~t~~~~~~~~~in~~cr~~~ 135 (1008)
T TIGR01408 102 PFNEEFLDK--FQCVVLTEMSLPLQKEINDFCHSQC 135 (1008)
T ss_pred cCCHHHHcC--CCEEEECCCCHHHHHHHHHHHHHcC
Confidence 22 445554 6777776655422 34444555555
No 380
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.65 E-value=0.75 Score=44.35 Aligned_cols=89 Identities=13% Similarity=-0.001 Sum_probs=52.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHH-HHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEE-SAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||+|+|+|..|.. .+..|.+.+ .++ -+.|.++. ......+ +++ +....++..+ .+.+. ++|.|+++..
T Consensus 10 ~v~v~G~G~sG~~-~~~~l~~~g--~~v-~~~d~~~~~~~~~~~~-l~~---~~~~~~~~~~-~~~~~--~~d~vV~Spg 78 (468)
T PRK04690 10 RVALWGWGREGRA-AYRALRAHL--PAQ-ALTLFCNAVEAREVGA-LAD---AALLVETEAS-AQRLA--AFDVVVKSPG 78 (468)
T ss_pred EEEEEccchhhHH-HHHHHHHcC--CEE-EEEcCCCcccchHHHH-Hhh---cCEEEeCCCC-hHHcc--CCCEEEECCC
Confidence 8999999998875 677777665 455 34675432 2111111 111 1111111122 34454 3788766544
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018445 83 GQAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~E 103 (355)
-....+..++|.+.|++|+.|
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~ 99 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGG 99 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEH
Confidence 445566788889999999976
No 381
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=90.58 E-value=2.7 Score=36.51 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=50.1
Q ss_pred hhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 65 LEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
.+.+.+- +|++-|.+.+...+++.+++-+.||+|++=|+++.+++|..-.++.....|
T Consensus 86 ~~~vae~--vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~G 143 (258)
T TIGR01362 86 CEPVAEV--VDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTG 143 (258)
T ss_pred HHHHHhh--CcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 4444443 999999999999999999999999999999999999999877777777753
No 382
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.58 E-value=0.55 Score=45.90 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
++.|+|+|.+|+. .+..|...+ ++| .+++++.++++.+++.. ......+ .++++.+. .+.|+|+.+||.
T Consensus 381 ~vlIlGaGGagrA-ia~~L~~~G--~~V-~i~nR~~e~a~~la~~l----~~~~~~~--~~~~~~~~-~~~diiINtT~v 449 (529)
T PLN02520 381 LFVVIGAGGAGKA-LAYGAKEKG--ARV-VIANRTYERAKELADAV----GGQALTL--ADLENFHP-EEGMILANTTSV 449 (529)
T ss_pred EEEEECCcHHHHH-HHHHHHHCC--CEE-EEEcCCHHHHHHHHHHh----CCceeeH--hHhhhhcc-ccCeEEEecccC
Confidence 5889999998875 677777654 565 47899999998887632 1111111 33333332 236888888988
Q ss_pred cccHH-----HHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHHHH
Q 018445 84 QAQVD-----TSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFVEC 148 (355)
Q Consensus 84 ~~H~~-----~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~ 148 (355)
..+.. +-...++ ...++++- .-++.+ -.|++.|++ .|..+.-|..+-...+..+.
T Consensus 450 Gm~~~~~~~pl~~~~l~-~~~~v~D~--vY~P~~-T~ll~~A~~------~G~~~~~Gl~MLv~Qa~~~f 509 (529)
T PLN02520 450 GMQPNVDETPISKHALK-HYSLVFDA--VYTPKI-TRLLREAEE------SGAIIVSGTEMFIRQAYEQF 509 (529)
T ss_pred CCCCCCCCCcccHhhCC-CCCEEEEe--ccCCCc-CHHHHHHHH------CCCeEeCcHHHHHHHHHHHH
Confidence 76532 1122222 23334332 122222 346667777 37767666655544444433
No 383
>PLN00106 malate dehydrogenase
Probab=90.55 E-value=0.38 Score=43.79 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=41.3
Q ss_pred CceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcC--CccccccCcchhhhhcCCCccEEE
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFA--DVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
+.||+|||+ |++|.. ....|...+- +.-..++|+++...+.. +.. ...+ .+......+++.+.+.+ .|+|+
T Consensus 18 ~~KV~IiGaaG~VG~~-~a~~l~~~~~-~~el~L~Di~~~~g~a~-Dl~-~~~~~~~i~~~~~~~d~~~~l~~--aDiVV 91 (323)
T PLN00106 18 GFKVAVLGAAGGIGQP-LSLLMKMNPL-VSELHLYDIANTPGVAA-DVS-HINTPAQVRGFLGDDQLGDALKG--ADLVI 91 (323)
T ss_pred CCEEEEECCCCHHHHH-HHHHHHhCCC-CCEEEEEecCCCCeeEc-hhh-hCCcCceEEEEeCCCCHHHHcCC--CCEEE
Confidence 359999999 999975 5555653332 33346678877222111 100 0111 11111122455666766 89999
Q ss_pred EecCC
Q 018445 79 VVLAG 83 (355)
Q Consensus 79 I~tp~ 83 (355)
++.-.
T Consensus 92 itAG~ 96 (323)
T PLN00106 92 IPAGV 96 (323)
T ss_pred EeCCC
Confidence 98543
No 384
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.54 E-value=1.1 Score=42.90 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=54.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|.|+|.|..|.. -...|.+.+ ..|++ .|.++.... . +..++...++....+ ..-++.+. +.|+|+++.--
T Consensus 7 ~~~v~G~g~~G~~-~a~~l~~~g--~~v~~-~d~~~~~~~-~-~~l~~~~~gi~~~~g-~~~~~~~~--~~d~vv~spgi 77 (445)
T PRK04308 7 KILVAGLGGTGIS-MIAYLRKNG--AEVAA-YDAELKPER-V-AQIGKMFDGLVFYTG-RLKDALDN--GFDILALSPGI 77 (445)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEEEE-EeCCCCchh-H-HHHhhccCCcEEEeC-CCCHHHHh--CCCEEEECCCC
Confidence 7999999999976 466666654 56654 465443211 1 111122224433321 11223333 48998887666
Q ss_pred cccHHHHHHHHHcCCeEEEec
Q 018445 84 QAQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~EK 104 (355)
....+..++|.++|++|+.|-
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~ 98 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDI 98 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhH
Confidence 666678888899999988653
No 385
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.45 E-value=2.9 Score=36.39 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=50.3
Q ss_pred hhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 65 LEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
.+.+.+- +|++-|...+...+++++++-+.||+|++=|+++.+++|..-.++.....|
T Consensus 94 ~~~v~~~--~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~G 151 (264)
T PRK05198 94 AAPVAEV--VDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAG 151 (264)
T ss_pred HHHHHhh--CcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 4444443 999999999999999999999999999999999999999888887777753
No 386
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=90.37 E-value=0.53 Score=42.48 Aligned_cols=74 Identities=19% Similarity=0.039 Sum_probs=44.1
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCc--cccccCcchhhhhcCCCccEEEEecC
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADV--ECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
|+|||+|.+|.. ..-.+...+- +.=+.++|+++++++..+.......+.. ...+..++++ .+++ .|+|+|+..
T Consensus 1 i~iiGaG~VG~~-~a~~l~~~~~-~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~--aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAA-VAFALIAKGL-ASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD--ADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHH-HHHHHHhcCC-CCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC--CCEEEEcCC
Confidence 689999999975 4544544432 4445788999998887765443332111 1111124565 4444 788888865
Q ss_pred C
Q 018445 83 G 83 (355)
Q Consensus 83 ~ 83 (355)
.
T Consensus 76 ~ 76 (300)
T cd00300 76 A 76 (300)
T ss_pred C
Confidence 4
No 387
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.36 E-value=0.65 Score=38.17 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=55.1
Q ss_pred EEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc-C---cchhhhhcCCCccEEEE
Q 018445 5 IAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWG-D---NGLEQIIKEDSILGVAV 79 (355)
Q Consensus 5 igiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ell~~~~~D~V~I 79 (355)
|.|+|+ |.+|.. .++.|.+.+ .+|++++ |++++.+. .. ++....+ . +++.+.++ ++|+|+.
T Consensus 1 I~V~GatG~vG~~-l~~~L~~~~--~~V~~~~-R~~~~~~~-~~-------~~~~~~~d~~d~~~~~~al~--~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRA-LAKQLLRRG--HEVTALV-RSPSKAED-SP-------GVEIIQGDLFDPDSVKAALK--GADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHH-HHHHHHHTT--SEEEEEE-SSGGGHHH-CT-------TEEEEESCTTCHHHHHHHHT--TSSEEEE
T ss_pred eEEECCCChHHHH-HHHHHHHCC--CEEEEEe-cCchhccc-cc-------ccccceeeehhhhhhhhhhh--hcchhhh
Confidence 689995 999986 788887765 6898876 56776665 11 2221111 1 24455566 4999999
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+.++..- +...++.++++++++
T Consensus 67 ~~~~~~~----------------------~~~~~~~~~~a~~~~ 88 (183)
T PF13460_consen 67 AAGPPPK----------------------DVDAAKNIIEAAKKA 88 (183)
T ss_dssp CCHSTTT----------------------HHHHHHHHHHHHHHT
T ss_pred hhhhhcc----------------------ccccccccccccccc
Confidence 9876544 166677888888775
No 388
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.27 E-value=0.8 Score=39.97 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=49.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~t 81 (355)
.|+-|+|.|+.+.. ..+..... + ++|+ ++|.+++... . ..+|++.... ...+++.+.. ..-++|+|.|
T Consensus 101 ~~L~IfGaG~va~~-la~la~~l-G-f~V~-v~D~R~~~~~---~---~~~~~~~~~~-~~~~~~~~~~~~~~t~vvi~t 169 (246)
T TIGR02964 101 PHVVLFGAGHVGRA-LVRALAPL-P-CRVT-WVDSREAEFP---E---DLPDGVATLV-TDEPEAEVAEAPPGSYFLVLT 169 (246)
T ss_pred CEEEEECCcHHHHH-HHHHHhcC-C-CEEE-EEeCCccccc---c---cCCCCceEEe-cCCHHHHHhcCCCCcEEEEEe
Confidence 58999999999974 44444444 3 8886 6687766221 1 2334543221 1445666552 2468999999
Q ss_pred CCcccHHHHHHHH
Q 018445 82 AGQAQVDTSLKLL 94 (355)
Q Consensus 82 p~~~H~~~~~~al 94 (355)
.++.+-..+.+++
T Consensus 170 h~h~~D~~~L~~a 182 (246)
T TIGR02964 170 HDHALDLELCHAA 182 (246)
T ss_pred CChHHHHHHHHHH
Confidence 8887765554443
No 389
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.18 E-value=1.8 Score=38.74 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=59.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|||+|+|..|.. -++.-++.+ .+|++|-..+..+-+++. .-..|..++++-
T Consensus 183 ~~vgI~GlGGLGh~-aVq~AKAMG--~rV~vis~~~~kkeea~~------------------------~LGAd~fv~~~~ 235 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHM-AVQYAKAMG--MRVTVISTSSKKKEEAIK------------------------SLGADVFVDSTE 235 (360)
T ss_pred cEEEEecCcccchH-HHHHHHHhC--cEEEEEeCCchhHHHHHH------------------------hcCcceeEEecC
Confidence 47999999987743 344444554 788887444333333322 222455555665
Q ss_pred CcccHHHHHHHHHcCCeEE---EecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEeccc
Q 018445 83 GQAQVDTSLKLLKAGKHVI---QEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYR 140 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl---~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r 140 (355)
+..-.+.+..++.-+.|-. .++|+ +.++++.+. +|..++||...-
T Consensus 236 d~d~~~~~~~~~dg~~~~v~~~a~~~~-------~~~~~~lk~------~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 236 DPDIMKAIMKTTDGGIDTVSNLAEHAL-------EPLLGLLKV------NGTLVLVGLPEK 283 (360)
T ss_pred CHHHHHHHHHhhcCcceeeeeccccch-------HHHHHHhhc------CCEEEEEeCcCC
Confidence 5555566666677776632 45553 445666766 688888888765
No 390
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.08 E-value=0.95 Score=43.13 Aligned_cols=92 Identities=12% Similarity=-0.028 Sum_probs=52.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHH-HHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEES-AKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||.|||+|..|. .....|.+.+ .+| .++|..+.. ........ +...++....+ .+ .+.++ +.|+|+++..
T Consensus 1 ~~~~iG~G~~G~-a~a~~l~~~G--~~V-~~sD~~~~~~~~~~~~~~-~~~~gi~~~~g-~~-~~~~~--~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGR-AVARFLHKKG--AEV-TVTDLKPNEELEPSMGQL-RLNEGSVLHTG-LH-LEDLN--NADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHH-HHHHHHHHCC--CEE-EEEeCCCCccchhHHHHH-hhccCcEEEec-Cc-hHHhc--cCCEEEECCC
Confidence 689999999998 4677777655 565 457865432 11100000 10014433322 23 34454 3787766554
Q ss_pred CcccHHHHHHHHHcCCeEEEec
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EK 104 (355)
-....+...+|.++|++|+.|-
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~ 93 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDI 93 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHH
Confidence 3344466777789999998774
No 391
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=90.03 E-value=0.78 Score=48.24 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=60.6
Q ss_pred CceEEEEecccccchhccchhhhcCCeE-----EEEEEEeC-------------------CHHHHHHHHHHHhhhcCCcc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLV-----SLKFIWSR-------------------SEESAKSAAEVARKHFADVE 57 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~-----~vvai~d~-------------------~~~~~~~~~~~~~~~~~~~~ 57 (355)
..||.|||+|.+|.. .+..|...+ + .=+.|+|. ...+++.+++..++..|++.
T Consensus 419 ~~kVlvvGaGGlG~e-~lknLal~G--v~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~ 495 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCE-MLKNFALMG--VGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIK 495 (1008)
T ss_pred hCcEEEECCChHHHH-HHHHHHHhC--CCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCE
Confidence 368999999999986 788877543 2 11233343 33556666666666777765
Q ss_pred ccccCcch----hhhhcC---CCccEEEEecCC-cccHHHHHHHHHcCCeEE
Q 018445 58 CVWGDNGL----EQIIKE---DSILGVAVVLAG-QAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 58 ~~~~~~~~----~ell~~---~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl 101 (355)
.......+ +.++.+ .+.|+|+.|+.+ ..+.-+-..|...+++++
T Consensus 496 I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli 547 (1008)
T TIGR01408 496 IDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLL 547 (1008)
T ss_pred EEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 43221111 222211 348999999877 456667788899888743
No 392
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.01 E-value=1.1 Score=42.70 Aligned_cols=90 Identities=10% Similarity=0.049 Sum_probs=51.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||.|||.|..|.. -+..|.+.+ .+|++ +|..+.... ... . +. ++....+ ....+.+.+ .|+|+++..-
T Consensus 8 ~i~v~G~G~sG~s-~~~~l~~~G--~~v~~-~D~~~~~~~-~~~-l-~~--g~~~~~~-~~~~~~~~~--~d~vv~spgi 75 (438)
T PRK03806 8 KVVIIGLGLTGLS-CVDFFLARG--VTPRV-IDTRITPPG-LDK-L-PE--NVERHTG-SLNDEWLLA--ADLIVASPGI 75 (438)
T ss_pred EEEEEeeCHHHHH-HHHHHHHCC--CeEEE-EcCCCCchh-HHH-H-hc--CCEEEeC-CCCHHHhcC--CCEEEECCCC
Confidence 7999999999976 566666654 56654 675432211 111 1 11 3332221 112233433 6755554433
Q ss_pred cccHHHHHHHHHcCCeEEEecC
Q 018445 84 QAQVDTSLKLLKAGKHVIQEKP 105 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~EKP 105 (355)
..+.+.+.+|.+.|++|+.|-.
T Consensus 76 ~~~~~~~~~a~~~g~~v~~~~e 97 (438)
T PRK03806 76 ALAHPSLSAAADAGIEIVGDIE 97 (438)
T ss_pred CCCCHHHHHHHHCCCeEEEHHH
Confidence 4556788888999999988743
No 393
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.85 E-value=0.97 Score=46.84 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCc-eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHH-HHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEE
Q 018445 1 MAP-RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEES-AKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVA 78 (355)
Q Consensus 1 m~~-rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~ 78 (355)
|+| +|.|||+|..|.......|.+.+ .+|+ ++|.++.. .+.+ ++. ++....+ ...+.+. +.|+|+
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G--~~V~-~sD~~~~~~~~~L----~~~--gi~~~~g--~~~~~~~--~~d~vV 68 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRG--YSVS-GSDLSEGKTVEKL----KAK--GARFFLG--HQEEHVP--EDAVVV 68 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCC--CeEE-EECCCCChHHHHH----HHC--CCEEeCC--CCHHHcC--CCCEEE
Confidence 455 69999999999763355666654 5664 56865422 2222 223 4443322 2234554 378887
Q ss_pred EecCCcccHHHHHHHHHcCCeEEEec
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl~EK 104 (355)
++..-....+...+|.++|++|+-|-
T Consensus 69 ~SpgI~~~~p~~~~a~~~gi~v~~~~ 94 (809)
T PRK14573 69 YSSSISKDNVEYLSAKSRGNRLVHRA 94 (809)
T ss_pred ECCCcCCCCHHHHHHHHCCCcEEeHH
Confidence 76554555566777899999999873
No 394
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=89.77 E-value=4.2 Score=38.62 Aligned_cols=107 Identities=8% Similarity=0.096 Sum_probs=71.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCC----------HHHHHHHHHHH-------hhh---cCCccccccC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRS----------EESAKSAAEVA-------RKH---FADVECVWGD 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~----------~~~~~~~~~~~-------~~~---~~~~~~~~~~ 62 (355)
.||+|=|.|+.|.. ....|.+.+ .+|++++|.+ .++++.+.+.- ..+ .++. .+
T Consensus 238 k~VaVqG~GnVg~~-aa~~L~e~G--akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a--~~-- 310 (454)
T PTZ00079 238 KTVVVSGSGNVAQY-AVEKLLQLG--AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTA--KY-- 310 (454)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCc--EE--
Confidence 58999999999974 556666654 7999999998 66664433210 011 1121 22
Q ss_pred cchhhhhcCCCccEEEEe-cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH
Q 018445 63 NGLEQIIKEDSILGVAVV-LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENAL 117 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~-tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~ 117 (355)
-+-+++++ -++|+.+=| +.+..+.+-+...++.|..+++|--=..+..++.+++
T Consensus 311 ~~~~~~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L 365 (454)
T PTZ00079 311 VPGKKPWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF 365 (454)
T ss_pred eCCcCccc-CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 23456666 458888844 7778899999998899999999973333333666555
No 395
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=89.76 E-value=3.8 Score=37.37 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=51.6
Q ss_pred hhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 67 QIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 67 ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+++++-++|+.=|++.+-.++++++++.+.||+|++=..++ +++|.++.++..++.
T Consensus 103 d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma-tl~Ei~~Av~~i~~~ 158 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA-TLEEIEAAVGVLRDA 158 (329)
T ss_pred HHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHHHc
Confidence 55666789999999999999999999999999999999995 999999999999885
No 396
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.73 E-value=1.1 Score=43.19 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=54.1
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHH-HHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEES-AKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
||.|||+|..|.......|.+.+ .+| .++|.++.. .+.+ ++. ++....+ .+ .+.++ ++|+|+++..
T Consensus 9 ~v~viG~G~sG~s~~a~~L~~~G--~~V-~~~D~~~~~~~~~l----~~~--gi~~~~~-~~-~~~~~--~~d~vv~spg 75 (461)
T PRK00421 9 RIHFVGIGGIGMSGLAEVLLNLG--YKV-SGSDLKESAVTQRL----LEL--GAIIFIG-HD-AENIK--DADVVVYSSA 75 (461)
T ss_pred EEEEEEEchhhHHHHHHHHHhCC--CeE-EEECCCCChHHHHH----HHC--CCEEeCC-CC-HHHCC--CCCEEEECCC
Confidence 79999999999752356666654 566 456765432 1222 222 4433221 22 34444 4887776654
Q ss_pred CcccHHHHHHHHHcCCeEEEec
Q 018445 83 GQAQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 83 ~~~H~~~~~~al~~GkhVl~EK 104 (355)
-....+..++|.++|++|+.|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~ 97 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRA 97 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHH
Confidence 4555667788899999998874
No 397
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=89.72 E-value=3.8 Score=34.12 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=42.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc-CCccccccCcchhhhhcCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF-ADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
.+|.=||||.-... +......++ .+|+++ |.+++..+.+.+..++.. +++... ..+.+++.....+|+|+..
T Consensus 47 ~~VLDiGcGtG~~a--l~la~~~~~-~~V~gi-D~s~~~l~~A~~~~~~~~l~~i~~~--~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 47 ERVLDVGSGAGFPG--IPLAIARPE-LKVTLV-DSLGKKIAFLREVAAELGLKNVTVV--HGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CeEEEEcCCCCHHH--HHHHHHCCC-CeEEEE-eCcHHHHHHHHHHHHHcCCCCEEEE--eccHhhCCCCCCccEEEEc
Confidence 47888999963321 211223444 688776 999988776665443432 222211 2566665545579999963
No 398
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.69 E-value=1.2 Score=40.44 Aligned_cols=95 Identities=12% Similarity=0.171 Sum_probs=52.5
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC----cchhhhhcCCCccEE
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD----NGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ell~~~~~D~V 77 (355)
|||.|+| +|.+|.. .++.|.+.+ .+|+++ +|++++...... . ++....+. +++++.++. +|+|
T Consensus 1 MkIlVtGatG~iG~~-lv~~Ll~~g--~~V~~l-~R~~~~~~~l~~----~--~v~~v~~Dl~d~~~l~~al~g--~d~V 68 (317)
T CHL00194 1 MSLLVIGATGTLGRQ-IVRQALDEG--YQVRCL-VRNLRKASFLKE----W--GAELVYGDLSLPETLPPSFKG--VTAI 68 (317)
T ss_pred CEEEEECCCcHHHHH-HHHHHHHCC--CeEEEE-EcChHHhhhHhh----c--CCEEEECCCCCHHHHHHHHCC--CCEE
Confidence 5899999 5999974 778887654 677776 455554433221 1 22221110 234555664 8998
Q ss_pred EEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+-+.+.... +.. .-...+...+..++++++++
T Consensus 69 i~~~~~~~~----------~~~----~~~~~~~~~~~~l~~aa~~~ 100 (317)
T CHL00194 69 IDASTSRPS----------DLY----NAKQIDWDGKLALIEAAKAA 100 (317)
T ss_pred EECCCCCCC----------Ccc----chhhhhHHHHHHHHHHHHHc
Confidence 876532110 000 01123445567777877775
No 399
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=89.60 E-value=2.4 Score=40.97 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=52.1
Q ss_pred eEEEEecccccchhccchhhhcC-CeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEIS-DLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~-~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
++.|||+|..|.. ....+.+.+ .+.+++|+.|.++... ...+++..-..+++.++.....+|+ +|+.|
T Consensus 148 rvLIIGaG~~a~~-l~~~L~~~~~~g~~vVGfIDd~~~~~---------~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip 216 (476)
T PRK15204 148 KTIILGSGQNARG-AYSALQSEEMMGFDVIAFFDTDASDA---------EINMLPVIKDTEIIWDLNRTGDVHY-ILAYE 216 (476)
T ss_pred eEEEEECCHHHHH-HHHHHHhCccCCcEEEEEEcCCcccc---------ccCCCcccCCHHHHHHHHHhCCCcE-EEEeC
Confidence 6899999999975 677776543 2489999999765531 1114432210123344555556774 78887
Q ss_pred Ccc---cHHHHHHHHHcCC
Q 018445 83 GQA---QVDTSLKLLKAGK 98 (355)
Q Consensus 83 ~~~---H~~~~~~al~~Gk 98 (355)
... ..+++..+.+.|.
T Consensus 217 ~~~~~~r~~il~~l~~~gv 235 (476)
T PRK15204 217 YTELEKTHFWLRELSKHHC 235 (476)
T ss_pred cCcHHHHHHHHHHHhhcCC
Confidence 654 3356677777776
No 400
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.21 E-value=0.62 Score=42.44 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=39.8
Q ss_pred CceEEEEec-ccccchhccchhhhcCC-----eEEEEEEEeCCH--HHHHHHHHHHhhh-cCCccc-cccCcchhhhhcC
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISD-----LVSLKFIWSRSE--ESAKSAAEVARKH-FADVEC-VWGDNGLEQIIKE 71 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~-----~~~vvai~d~~~--~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ell~~ 71 (355)
|+||+|||+ |.+|.. .+..|...+- ..+| .+.|..+ ++++..+.-.... .+.... ....++|+++-.
T Consensus 3 p~KV~IIGa~G~VG~~-~a~~l~~~~~~~~~~~~el-~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d- 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYS-LLFRIASGELFGKDQPVVL-HLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD- 79 (323)
T ss_pred CeEEEEECCCcHHHHH-HHHHHHhCCcccCCCccEE-EEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC-
Confidence 689999998 999975 4555543321 1145 6779854 3344433211111 111110 010144555543
Q ss_pred CCccEEEEecC
Q 018445 72 DSILGVAVVLA 82 (355)
Q Consensus 72 ~~~D~V~I~tp 82 (355)
.|+|+|+.-
T Consensus 80 --aDvVVitAG 88 (323)
T TIGR01759 80 --VDAALLVGA 88 (323)
T ss_pred --CCEEEEeCC
Confidence 799998853
No 401
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.20 E-value=4.2 Score=35.76 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=45.3
Q ss_pred ccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 74 ILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 74 ~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+|++-|.+.+...+++.+++-+.||+|++=|+.+.+++|..-.++.....
T Consensus 107 vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~ 156 (281)
T PRK12457 107 ADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREA 156 (281)
T ss_pred CeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998876666666665
No 402
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=89.12 E-value=6.5 Score=34.75 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=51.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccccccCcchhhhh-cCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECVWGDNGLEQII-KEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell-~~~~~D~V~I~ 80 (355)
-+|..||||. |.. -+......+...+|+++ |++++..+.+.+..... .+.+. +...+++++- .+..+|+|+..
T Consensus 79 ~~VLDiG~G~-G~~-~~~~a~~~g~~~~v~gv-D~s~~~l~~A~~~~~~~g~~~v~--~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 79 ETVLDLGSGG-GFD-CFLAARRVGPTGKVIGV-DMTPEMLAKARANARKAGYTNVE--FRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CEEEEeCCCC-CHH-HHHHHHHhCCCCEEEEE-CCCHHHHHHHHHHHHHcCCCCEE--EEEcchhhCCCCCCceeEEEEc
Confidence 3789999998 643 22222222222467664 99998888776644333 12221 1124666653 34468988754
Q ss_pred cCC------cccHHHHHHHHHcC-CeEEEe
Q 018445 81 LAG------QAQVDTSLKLLKAG-KHVIQE 103 (355)
Q Consensus 81 tp~------~~H~~~~~~al~~G-khVl~E 103 (355)
.-- ..-+.-+..+|+.| .=++.+
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 321 11244555666666 334433
No 403
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=88.99 E-value=0.79 Score=44.60 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=38.8
Q ss_pred EEEEecCCcccHHHHHHHHHcC------CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAG------KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~G------khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+++.++||..-..++...-.+| .-|.+|||++.|++.|++|.+...++
T Consensus 198 ifYLAvPP~~f~~i~~~L~~~~~~~~g~~RIVvEKPFG~DL~SA~~Ln~~L~~~ 251 (573)
T PLN02640 198 LFYLSIPPNIFVDVVRCASLRASSENGWTRVIVEKPFGRDSESSGELTRCLKQY 251 (573)
T ss_pred EEEEECCHHHHHHHHHHHHhccCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7889999988777776532333 47999999999999999998887764
No 404
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.98 E-value=2.2 Score=36.72 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=94.4
Q ss_pred eEEEEecccccchhccchhhhcCC-eEEEEE-----EE-----------eCCHHHHHHHHHHHhhhcCCcccc-----cc
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISD-LVSLKF-----IW-----------SRSEESAKSAAEVARKHFADVECV-----WG 61 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~-~~~vva-----i~-----------d~~~~~~~~~~~~~~~~~~~~~~~-----~~ 61 (355)
+|.|||+|..|.. .+.+|.+.+- ...|+- +. +....+.+...+..++..|.+... +.
T Consensus 32 ~V~VvGiGGVGSw-~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t 110 (263)
T COG1179 32 HVCVVGIGGVGSW-AVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFIT 110 (263)
T ss_pred cEEEEecCchhHH-HHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhC
Confidence 7999999999974 8888887542 122221 11 112345555666555555655422 11
Q ss_pred CcchhhhhcCCCccEEEEecCC-cccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEeccc
Q 018445 62 DNGLEQIIKEDSILGVAVVLAG-QAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYR 140 (355)
Q Consensus 62 ~~~~~ell~~~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r 140 (355)
-+++++++.. ++|.|+-|.-+ ..-.+++..|.+++++|+.-- -.+.+. -|+.+.+.-=...-
T Consensus 111 ~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~-------------Gag~k~---DPTri~v~DiskT~ 173 (263)
T COG1179 111 EENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSM-------------GAGGKL---DPTRIQVADISKTI 173 (263)
T ss_pred HhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcCCCEEeec-------------cccCCC---CCceEEeeechhhc
Confidence 2578888885 89999988777 466778888999999887642 223333 12344444444455
Q ss_pred CchHHHHHHHHHHH--hCCeeEEEEEEe
Q 018445 141 FEPAFVECKKLIAE--IGDMMSVQVIVE 166 (355)
Q Consensus 141 ~~p~~~~~k~~i~~--iG~i~~v~~~~~ 166 (355)
++|..+.+|..+++ .|.-..+.+.|+
T Consensus 174 ~DPLa~~vR~~LRk~~~~~~~gi~vVfS 201 (263)
T COG1179 174 QDPLAAKVRRKLRKRFPKIKFGVPVVFS 201 (263)
T ss_pred cCcHHHHHHHHHHHhccCCccCCceEec
Confidence 78999999999997 366666877775
No 405
>PRK14982 acyl-ACP reductase; Provisional
Probab=88.90 E-value=0.78 Score=41.95 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=57.4
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-+|.|+|+ |.||.. .++.|....+ +.-+.+++++++++..+++++. .. .. .++++.+.+ +|+|+.+|
T Consensus 156 k~VLVtGAtG~IGs~-lar~L~~~~g-v~~lilv~R~~~rl~~La~el~----~~--~i--~~l~~~l~~--aDiVv~~t 223 (340)
T PRK14982 156 ATVAVVGATGDIGSA-VCRWLDAKTG-VAELLLVARQQERLQELQAELG----GG--KI--LSLEEALPE--ADIVVWVA 223 (340)
T ss_pred CEEEEEccChHHHHH-HHHHHHhhCC-CCEEEEEcCCHHHHHHHHHHhc----cc--cH--HhHHHHHcc--CCEEEECC
Confidence 37999998 899975 7777764322 3223466899898888776321 11 11 467777776 88888877
Q ss_pred CCcccHHHHHHHHHcCCeEEEecCCCCCHH
Q 018445 82 AGQAQVDTSLKLLKAGKHVIQEKPAAANIS 111 (355)
Q Consensus 82 p~~~H~~~~~~al~~GkhVl~EKP~a~~~~ 111 (355)
.......+-.+-+ ...-++|+=-+=.+++
T Consensus 224 s~~~~~~I~~~~l-~~~~~viDiAvPRDVd 252 (340)
T PRK14982 224 SMPKGVEIDPETL-KKPCLMIDGGYPKNLD 252 (340)
T ss_pred cCCcCCcCCHHHh-CCCeEEEEecCCCCCC
Confidence 6544322222323 2335666654444443
No 406
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=88.67 E-value=3 Score=35.26 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=42.2
Q ss_pred eEEEEecccccchhccchhhhc-CCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEI-SDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~-~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
+|.=||||. |. .+..|... ++ .+++|| |.+++..+.+.+. .+.+...- .+..+-+.+...|+|+..
T Consensus 46 ~VLDiGCG~-G~--~~~~L~~~~~~-~~v~gi-DiS~~~l~~A~~~----~~~~~~~~--~d~~~~~~~~sfD~V~~~ 112 (204)
T TIGR03587 46 SILELGANI-GM--NLAALKRLLPF-KHIYGV-EINEYAVEKAKAY----LPNINIIQ--GSLFDPFKDNFFDLVLTK 112 (204)
T ss_pred cEEEEecCC-CH--HHHHHHHhCCC-CeEEEE-ECCHHHHHHHHhh----CCCCcEEE--eeccCCCCCCCEEEEEEC
Confidence 688899995 43 45555543 44 688888 9999998887652 23332221 344444556679998853
No 407
>PRK14031 glutamate dehydrogenase; Provisional
Probab=88.62 E-value=3.2 Score=39.42 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=71.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEe----------CCHHHHHHHHHHHhhh-------cCC-ccccccCcc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWS----------RSEESAKSAAEVARKH-------FAD-VECVWGDNG 64 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d----------~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~ 64 (355)
.||+|.|.|+.|.. .+..|.+.+ .+|++|+| .+.+......+ .+.. ++. ....+ -+
T Consensus 229 ~rVaVQGfGNVG~~-aA~~L~e~G--AkVVaVSD~~G~iy~~~Gld~~~l~~~~~-~k~~~~~~v~~~~~~~ga~~--i~ 302 (444)
T PRK14031 229 KVCLVSGSGNVAQY-TAEKVLELG--GKVVTMSDSDGYIYDPDGIDREKLDYIME-LKNLYRGRIREYAEKYGCKY--VE 302 (444)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHH-HHhhcCCchhhhHhhcCCEE--cC
Confidence 58999999999974 566666654 79999999 77766542211 0000 110 01111 34
Q ss_pred hhhhhcCCCccEEEEe-cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH
Q 018445 65 LEQIIKEDSILGVAVV-LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALS 118 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~-tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~ 118 (355)
-+++++ .++|+.+=| +.+.-+.+.+......|.-+++|--=..+..++.+++.
T Consensus 303 ~d~~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~ 356 (444)
T PRK14031 303 GARPWG-EKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQ 356 (444)
T ss_pred Cccccc-CCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHH
Confidence 567776 457887744 56668888888877778889999866666667766553
No 408
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.58 E-value=11 Score=35.00 Aligned_cols=145 Identities=15% Similarity=0.156 Sum_probs=94.4
Q ss_pred eEEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCC------------------ccccccCcc
Q 018445 4 RIAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEESAKSAAEVARKHFAD------------------VECVWGDNG 64 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 64 (355)
||-|+|+|..+. ++..+. +... .+ ++++.|...+.+.+.+...+..-. +... +.+
T Consensus 3 ~VLI~GtGPvAi--QLAv~lk~~~~-~~-vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~--~~~ 76 (429)
T PF10100_consen 3 NVLIVGTGPVAI--QLAVILKKHGN-CR-VGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHV--FQD 76 (429)
T ss_pred ceEEEcCCHHHH--HHHHHHHhccC-ce-eeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHh--hcC
Confidence 899999999886 444444 4433 34 488999888888876644331000 1111 256
Q ss_pred hhhhhcCCCccEEEEecCCcccHHHHH----HHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc----------------C
Q 018445 65 LEQIIKEDSILGVAVVLAGQAQVDTSL----KLLKAGKHVIQEKPAAANISEIENALSRYNSI----------------C 124 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~tp~~~H~~~~~----~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~----------------~ 124 (355)
++++..+ -|.++.|+|.+.=.++.. +.|+.=|+|++=-|---+--=.+.++...... .
T Consensus 77 ~~~i~g~--WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 77 YEEIEGE--WDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred HHHhccc--ccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 7777665 899999999998877775 56666789888877655554444443322200 0
Q ss_pred CCCC-------CCCeEEEEecccCchHHHHHHHHHHHhC
Q 018445 125 PDPP-------GQPIWAVAENYRFEPAFVECKKLIAEIG 156 (355)
Q Consensus 125 ~~~~-------~~~~~~v~~~~r~~p~~~~~k~~i~~iG 156 (355)
...+ -+.++++|.+.--++...+++.+++++|
T Consensus 155 ~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~g 193 (429)
T PF10100_consen 155 GEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLG 193 (429)
T ss_pred CCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcC
Confidence 0000 1346889999999999999999998743
No 409
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=88.44 E-value=0.88 Score=44.52 Aligned_cols=48 Identities=15% Similarity=0.067 Sum_probs=40.8
Q ss_pred EEEEecCCcccHHHHHHHHHcC------CeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 76 GVAVVLAGQAQVDTSLKLLKAG------KHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 76 ~V~I~tp~~~H~~~~~~al~~G------khVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+.++++||..-..++...-++| .-|.+|||++.|++.|++|.+...+.
T Consensus 227 lfYLAlPP~~f~~v~~~L~~~~l~~~gw~RIVvEKPFG~Dl~SA~~Ln~~L~~~ 280 (604)
T PLN02333 227 LFYLSIPPNIFVDAVKCASSSASSVNGWTRVIVEKPFGRDSESSAALTKSLKQY 280 (604)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCcCCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 7899999999888887766665 37999999999999999998877664
No 410
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=88.36 E-value=0.78 Score=43.50 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=45.4
Q ss_pred CceEEEEec-ccccchhccchhhhc-------CCeEEEEEEEeCCHHHHHHHHHHHhhhc-CCc-cccccCcchhhhhcC
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEI-------SDLVSLKFIWSRSEESAKSAAEVARKHF-ADV-ECVWGDNGLEQIIKE 71 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~-------~~~~~vvai~d~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ell~~ 71 (355)
++||+|||+ |.+|.. .+..|... +--.+|+ +.|+++++++.-+-...... |-. .......+|+++-+
T Consensus 100 ~~KV~IIGAaG~VG~~-~A~~L~~~~v~g~~~~i~~eLv-liD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd- 176 (444)
T PLN00112 100 LINVAVSGAAGMISNH-LLFKLASGEVFGPDQPIALKLL-GSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD- 176 (444)
T ss_pred CeEEEEECCCcHHHHH-HHHHHHhcccccCCCCcccEEE-EEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc-
Confidence 579999999 999974 56555543 2112554 66999999877654332211 111 11111256665544
Q ss_pred CCccEEEEecCC
Q 018445 72 DSILGVAVVLAG 83 (355)
Q Consensus 72 ~~~D~V~I~tp~ 83 (355)
.|+|+|+.-.
T Consensus 177 --aDiVVitAG~ 186 (444)
T PLN00112 177 --AEWALLIGAK 186 (444)
T ss_pred --CCEEEECCCC
Confidence 7999987543
No 411
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.81 E-value=0.68 Score=41.89 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=23.0
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
|||+|||+ |++|.. .+-.|...+- +.=+.++|++
T Consensus 1 ~KI~IIGaaG~VG~~-~a~~l~~~~~-~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQP-LSLLLKLNPL-VSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHH-HHHHHHhCCC-CcEEEEEecC
Confidence 69999999 999974 4444543332 3334677887
No 412
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.70 E-value=1.8 Score=42.12 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=51.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHH--HHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEES--AKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
||.|+|+|..|.. .+..|.+.+ .+|+ ++|..... .+.+ +...+++....+ ....+.++ +.|+|+++.
T Consensus 9 ~i~v~G~G~sG~s-~a~~L~~~G--~~v~-~~D~~~~~~~~~~L----~~~~~~~~~~~g-~~~~~~~~--~~d~vv~sp 77 (498)
T PRK02006 9 MVLVLGLGESGLA-MARWCARHG--ARLR-VADTREAPPNLAAL----RAELPDAEFVGG-PFDPALLD--GVDLVALSP 77 (498)
T ss_pred EEEEEeecHhHHH-HHHHHHHCC--CEEE-EEcCCCCchhHHHH----HhhcCCcEEEeC-CCchhHhc--CCCEEEECC
Confidence 7999999999975 666666665 5664 46765422 1222 122223332221 12344555 378777763
Q ss_pred CC-ccc---HHHHHHHHHcCCeEEEe
Q 018445 82 AG-QAQ---VDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 82 p~-~~H---~~~~~~al~~GkhVl~E 103 (355)
.- ..| .+...+|-+.|++|+.|
T Consensus 78 ~I~~~~~~~~~~~~~a~~~~i~v~~~ 103 (498)
T PRK02006 78 GLSPLEAALAPLVAAARERGIPVWGE 103 (498)
T ss_pred CCCCcccccCHHHHHHHHCCCcEEEH
Confidence 22 223 47777888889999865
No 413
>PRK06444 prephenate dehydrogenase; Provisional
Probab=87.64 E-value=0.6 Score=39.21 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=35.2
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
|||+|||. |.+|+. +...+.+.+ +.|. + .+.|+|++|+
T Consensus 1 ~~~~iiG~~G~mG~~-~~~~~~~~g--~~v~------------------------------------~--~~~DlVilav 39 (197)
T PRK06444 1 MMEIIIGKNGRLGRV-LCSILDDNG--LGVY------------------------------------I--KKADHAFLSV 39 (197)
T ss_pred CEEEEEecCCcHHHH-HHHHHHhCC--CEEE------------------------------------E--CCCCEEEEeC
Confidence 68999998 999974 666666554 4542 0 2478888888
Q ss_pred CCcccHHHHHHH
Q 018445 82 AGQAQVDTSLKL 93 (355)
Q Consensus 82 p~~~H~~~~~~a 93 (355)
|...-.+++.+.
T Consensus 40 Pv~~~~~~i~~~ 51 (197)
T PRK06444 40 PIDAALNYIESY 51 (197)
T ss_pred CHHHHHHHHHHh
Confidence 888766666553
No 414
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=1.5 Score=39.45 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=91.1
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc--CcchhhhhcCCCccEEE
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWG--DNGLEQIIKEDSILGVA 78 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ell~~~~~D~V~ 78 (355)
|+.-|-|.|+-..........+.+... .. ++..||..+..++... ..|+....=. -..+++|++. .++|+
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~--~~-aLAgRs~~kl~~l~~~---LG~~~~~~p~~~p~~~~~~~~~--~~VVl 76 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGL--TA-ALAGRSSAKLDALRAS---LGPEAAVFPLGVPAALEAMASR--TQVVL 76 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCC--ch-hhccCCHHHHHHHHHh---cCccccccCCCCHHHHHHHHhc--ceEEE
Confidence 345788999766554545666666543 33 8999999999998874 3333321100 0357888887 88999
Q ss_pred EecCCccc--HHHHHHHHHcCCe---EEEecCCCCCHHHHHHH-HHHhhccCCCCCCCCeEEEEecccCch----HHHHH
Q 018445 79 VVLAGQAQ--VDTSLKLLKAGKH---VIQEKPAAANISEIENA-LSRYNSICPDPPGQPIWAVAENYRFEP----AFVEC 148 (355)
Q Consensus 79 I~tp~~~H--~~~~~~al~~Gkh---Vl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~~~~~~v~~~~r~~p----~~~~~ 148 (355)
.|.-|..| .+++.+|+.+|-| +-=|-++..+. ..+ -+.|+++ |+.+..+.-+=--| .+...
T Consensus 77 ncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~---i~~yh~~A~~~------Ga~Ii~~cGFDsIPsDl~v~~l~ 147 (382)
T COG3268 77 NCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENS---IDLYHAQAADA------GARIIPGCGFDSIPSDLGVYALL 147 (382)
T ss_pred eccccccccccHHHHHHHHhCCCeeeccccHHHHHHH---HHHHHHHHHhc------CCEEeccCCCCcCccchHHHHHH
Confidence 99999877 5788999999976 33344433322 222 3446663 66554443332222 34444
Q ss_pred HHHHHH-hCCeeEEEEEE
Q 018445 149 KKLIAE-IGDMMSVQVIV 165 (355)
Q Consensus 149 k~~i~~-iG~i~~v~~~~ 165 (355)
++.+.. .|++...+...
T Consensus 148 ~~~~~d~~~~~~~t~l~l 165 (382)
T COG3268 148 KQALPDGTEELIATHLAL 165 (382)
T ss_pred HhhCcccccchhhhheee
Confidence 444444 78877777654
No 415
>PRK00536 speE spermidine synthase; Provisional
Probab=87.46 E-value=4.8 Score=35.43 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=28.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHH
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAE 47 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~ 47 (355)
=||.|||-|.-|. ++.+.+++. +| -+||.|++-.+.+.+
T Consensus 74 k~VLIiGGGDGg~---~REvLkh~~--~v-~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 74 KEVLIVDGFDLEL---AHQLFKYDT--HV-DFVQADEKILDSFIS 112 (262)
T ss_pred CeEEEEcCCchHH---HHHHHCcCC--ee-EEEECCHHHHHHHHH
Confidence 3899999998663 556666664 44 567999987776654
No 416
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=87.44 E-value=5.7 Score=32.82 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=40.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccccccCcchhhhhcCCCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECVWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell~~~~~D~V~I~ 80 (355)
.+|.=||||.-... +......++ .+|+++ |.+++..+.+.+..++. .+++. +...|.+++..+..+|+|+..
T Consensus 44 ~~vLDiGcGtG~~s--~~la~~~~~-~~V~~i-D~s~~~~~~a~~~~~~~~~~~i~--~i~~d~~~~~~~~~fD~I~s~ 116 (181)
T TIGR00138 44 KKVIDIGSGAGFPG--IPLAIARPE-LKLTLL-ESNHKKVAFLREVKAELGLNNVE--IVNGRAEDFQHEEQFDVITSR 116 (181)
T ss_pred CeEEEecCCCCccH--HHHHHHCCC-CeEEEE-eCcHHHHHHHHHHHHHhCCCCeE--EEecchhhccccCCccEEEeh
Confidence 36778999963322 111122233 577666 99998776555433333 22332 223677776555679987653
No 417
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.40 E-value=2.1 Score=41.00 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=51.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
-|+|||+|..|.. ....|.+.+ .+| .++|..+... . .+..++.++++....+..+ .+.+.+ .|.|+++.--
T Consensus 8 ~~~v~G~G~sG~s-~a~~L~~~G--~~v-~~~D~~~~~~-~-~~~l~~~~~g~~~~~~~~~-~~~~~~--~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLS-VVRFLARQG--IPF-AVMDSREQPP-G-LDTLAREFPDVELRCGGFD-CELLVQ--ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHH-HHHHHHhCC--CeE-EEEeCCCCch-h-HHHHHhhcCCcEEEeCCCC-hHHhcC--CCEEEECCCC
Confidence 4899999999975 666666654 565 4578654321 1 1111121224433221123 344443 7877665443
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+...+|.++|++|+.|
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~ 98 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGD 98 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEH
Confidence 44556677778999998865
No 418
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=87.40 E-value=5 Score=34.97 Aligned_cols=137 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeC-------CHHHHHHHHHHHhhhcCCccccc-------cCcch-hh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR-------SEESAKSAAEVARKHFADVECVW-------GDNGL-EQ 67 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~e 67 (355)
.|++|-|.|..|.. .+..|.+.+ ..|+++.|. +.-..+.+.+...+....+.... -+-+- ++
T Consensus 33 ~~v~IqGfG~VG~~-~a~~l~~~G--a~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 33 KRVAIQGFGNVGSH-AARFLAELG--AKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp CEEEEEESSHHHHH-HHHHHHHTT--EEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred CEEEEECCCHHHHH-HHHHHHHcC--CEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 58999999999974 667777664 788888554 33344444332112211011100 00122 27
Q ss_pred hhcCCCccEEEEec-CCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccCchHHH
Q 018445 68 IIKEDSILGVAVVL-AGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRFEPAFV 146 (355)
Q Consensus 68 ll~~~~~D~V~I~t-p~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~ 146 (355)
+++ .++|+.+-|. ++.-+.+.+...+++|..++||=-=.....++.++ .++ +|+.+...+--.-.....
T Consensus 110 il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~---L~~------rGI~viPD~~aNaGGvi~ 179 (244)
T PF00208_consen 110 ILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEI---LRE------RGILVIPDFLANAGGVIV 179 (244)
T ss_dssp GGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHH---HHH------TT-EEE-HHHHTTHHHHH
T ss_pred ccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHH---HHH------CCCEEEcchhhcCCCeEe
Confidence 777 4699999875 77788998887789999999997333333556553 233 388887765554444443
Q ss_pred HHHHHH
Q 018445 147 ECKKLI 152 (355)
Q Consensus 147 ~~k~~i 152 (355)
...+++
T Consensus 180 s~~E~~ 185 (244)
T PF00208_consen 180 SYFEWL 185 (244)
T ss_dssp HHHHHH
T ss_pred ehhhhc
Confidence 334443
No 419
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=87.29 E-value=4.5 Score=35.63 Aligned_cols=51 Identities=16% Similarity=-0.005 Sum_probs=48.1
Q ss_pred ccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccC
Q 018445 74 ILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSIC 124 (355)
Q Consensus 74 ~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 124 (355)
+|++-|...+..-+++.+++.+.||+|++=|+++.+++|..-.++.....|
T Consensus 107 ~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~G 157 (290)
T PLN03033 107 ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAG 157 (290)
T ss_pred CcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999998888888863
No 420
>PRK00811 spermidine synthase; Provisional
Probab=87.28 E-value=15 Score=32.73 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=45.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh------cCCccccccCcchhhhhc--CCCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH------FADVECVWGDNGLEQIIK--EDSI 74 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ell~--~~~~ 74 (355)
-||.+||+|.-+ .+..+.+.++ +.-+-++|.|++-.+.+.+.+... .|.+.... .|..+.+. ....
T Consensus 78 ~~VL~iG~G~G~---~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~--~Da~~~l~~~~~~y 151 (283)
T PRK00811 78 KRVLIIGGGDGG---TLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI--GDGIKFVAETENSF 151 (283)
T ss_pred CEEEEEecCchH---HHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE--CchHHHHhhCCCcc
Confidence 489999999633 2344444444 333456699999888776643221 23333322 66666665 3569
Q ss_pred cEEEEecCC
Q 018445 75 LGVAVVLAG 83 (355)
Q Consensus 75 D~V~I~tp~ 83 (355)
|+|++-.++
T Consensus 152 DvIi~D~~d 160 (283)
T PRK00811 152 DVIIVDSTD 160 (283)
T ss_pred cEEEECCCC
Confidence 999986543
No 421
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.86 E-value=1.8 Score=41.54 Aligned_cols=87 Identities=6% Similarity=0.013 Sum_probs=50.9
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||+|+|+|.-|.. .+..|.+ + .+| .++|..++......+ .+ ... ..+ ....+.++ ++|.|+++..-
T Consensus 8 ~v~v~G~G~sG~a-~~~~L~~--g-~~v-~v~D~~~~~~~~~~~-~~----~~~-~~~-~~~~~~~~--~~d~vV~SPgI 73 (454)
T PRK01368 8 KIGVFGLGKTGIS-VYEELQN--K-YDV-IVYDDLKANRDIFEE-LY----SKN-AIA-ALSDSRWQ--NLDKIVLSPGI 73 (454)
T ss_pred EEEEEeecHHHHH-HHHHHhC--C-CEE-EEECCCCCchHHHHh-hh----cCc-eec-cCChhHhh--CCCEEEECCCC
Confidence 8999999998875 6676763 3 666 467854433222211 00 000 011 11234444 37877665443
Q ss_pred cccHHHHHHHHHcCCeEEEec
Q 018445 84 QAQVDTSLKLLKAGKHVIQEK 104 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~EK 104 (355)
....+.+++|.+.|++|+.|-
T Consensus 74 ~~~~p~~~~a~~~gi~v~~e~ 94 (454)
T PRK01368 74 PLTHEIVKIAKNFNIPITSDI 94 (454)
T ss_pred CCCCHHHHHHHHCCCceecHH
Confidence 455577888899999998763
No 422
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=86.79 E-value=2.2 Score=40.94 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=51.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|-+||.|..|.......|.+.+ .+| .++|.+... . .+..++. ++....+ .+ .+.++ ++|+|+++.--
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G--~~v-~~~D~~~~~--~-~~~l~~~--gi~~~~g-~~-~~~~~--~~d~vV~spgi 68 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG--YQV-SGSDIAENA--T-TKRLEAL--GIPIYIG-HS-AENLD--DADVVVVSAAI 68 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC--CeE-EEECCCcch--H-HHHHHHC--cCEEeCC-CC-HHHCC--CCCEEEECCCC
Confidence 57899999988643456666654 566 457865542 1 1112222 4433221 12 33444 37877766433
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+..++|.++|++|+-|
T Consensus 69 ~~~~p~~~~a~~~~i~v~~~ 88 (448)
T TIGR01082 69 KDDNPEIVEAKERGIPVIRR 88 (448)
T ss_pred CCCCHHHHHHHHcCCceEeH
Confidence 44456777889999999876
No 423
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=86.75 E-value=3 Score=38.00 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=58.0
Q ss_pred eEEEEecccccchhccchhhh---cCCeEEEEEEEeCCHHHHHHHHHHHhhhc-CCc---ccccc----CcchhhhhcCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAE---ISDLVSLKFIWSRSEESAKSAAEVARKHF-ADV---ECVWG----DNGLEQIIKED 72 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~---~~~~~~vvai~d~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~~~ell~~~ 72 (355)
-+.|.|+........+..+.. .++ ..+ ||+.||++++++..++..+.. +++ ..... ..++.||...
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~sl-avAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~- 83 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSL-AVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ- 83 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceE-EEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh-
Confidence 467778654432213333332 333 566 999999999999887654442 111 10100 1357888877
Q ss_pred CccEEEEecCCccc--HHHHHHHHHcCCe
Q 018445 73 SILGVAVVLAGQAQ--VDTSLKLLKAGKH 99 (355)
Q Consensus 73 ~~D~V~I~tp~~~H--~~~~~~al~~Gkh 99 (355)
.-+|+.|.-|..| ..++++|+++|-|
T Consensus 84 -~~vivN~vGPyR~hGE~VVkacienG~~ 111 (423)
T KOG2733|consen 84 -ARVIVNCVGPYRFHGEPVVKACIENGTH 111 (423)
T ss_pred -hEEEEeccccceecCcHHHHHHHHcCCc
Confidence 6778889888644 6788999999975
No 424
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=86.51 E-value=1.4 Score=41.76 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=47.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchh---hhhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLE---QIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ell~~~~~D~V~I 79 (355)
|||+|||.|..+.. .+..+.+.+ ..+..+++++........+ .. .+... +.|.+ ++.+..++|+|+.
T Consensus 1 ~kiliiG~G~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~--~~~~~--~~d~~~l~~~~~~~~id~vi~ 70 (423)
T TIGR00877 1 MKVLVIGNGGREHA-LAWKLAQSP--LVKYVYVAPGNAGTARLAK---NK--NVAIS--ITDIEALVEFAKKKKIDLAVI 70 (423)
T ss_pred CEEEEECCChHHHH-HHHHHHhCC--CccEEEEECCCHHHhhhcc---cc--cccCC--CCCHHHHHHHHHHhCCCEEEE
Confidence 69999999998764 566666544 2333445554333322221 01 11111 14544 4555678999885
Q ss_pred ecCCcccHHHHHHHHHcCCeEE
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl 101 (355)
.........++..+-+.|.+++
T Consensus 71 ~~e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 71 GPEAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred CCchHHHHHHHHHHHHCCCeEE
Confidence 4332222345556566777665
No 425
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=86.42 E-value=1.9 Score=40.87 Aligned_cols=139 Identities=18% Similarity=0.123 Sum_probs=67.8
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhh---hhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQ---IIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---ll~~~~~D~V~I 79 (355)
|||+|||.|..... ....+.+.+. ...+.+ ++.........+ ..+ +. +.|.++ +....++|+|++
T Consensus 1 ~kvliiG~G~~~~~-l~~~l~~~~~-~~~i~~-~~~n~g~~~~~~----~~~-~~----~~d~~~l~~~~~~~~id~vi~ 68 (420)
T PRK00885 1 MKVLVIGSGGREHA-LAWKLAQSPL-VEKVYV-APGNAGTALLAE----NVV-ID----VTDIEALVAFAKEEGIDLTVV 68 (420)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCC-CCEEEE-eCCCHHHHhhcc----ccC-CC----CCCHHHHHHHHHHhCCCEEEE
Confidence 69999999965432 4445555443 444444 443333222221 111 11 145444 555677999986
Q ss_pred ecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHH-HHHHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCCe
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEI-ENALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGDM 158 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~i 158 (355)
..-...-..++..+-+.|.+++.-.|-+.....- ..+.++.+++ |+..- . ++.......+.+.++++|-+
T Consensus 69 ~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~------gip~p-~--~~~~~~~~~~~~~~~~~~~P 139 (420)
T PRK00885 69 GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARY------GIPTA-A--YETFTDAEEALAYLDEKGAP 139 (420)
T ss_pred CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHc------CCCCC-C--eEEeCCHHHHHHHHHHcCCC
Confidence 5433333344555566788877533322211111 1223455553 55521 1 11112335556666667766
Q ss_pred eEEE
Q 018445 159 MSVQ 162 (355)
Q Consensus 159 ~~v~ 162 (355)
.-+.
T Consensus 140 ~VvK 143 (420)
T PRK00885 140 IVVK 143 (420)
T ss_pred EEEE
Confidence 5555
No 426
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.34 E-value=5 Score=36.32 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|.|.|+|.+|.. .+..++.. + ++++++.+. .++.+.+. +. ++... -+.++. ....+|.++.+++.
T Consensus 170 ~vlV~g~g~vg~~-~~~la~~~-g-~~v~~~~~~-~~~~~~~~----~~--g~~~~---~~~~~~-~~~~vD~vi~~~~~ 235 (329)
T cd08298 170 RLGLYGFGASAHL-ALQIARYQ-G-AEVFAFTRS-GEHQELAR----EL--GADWA---GDSDDL-PPEPLDAAIIFAPV 235 (329)
T ss_pred EEEEECCcHHHHH-HHHHHHHC-C-CeEEEEcCC-hHHHHHHH----Hh--CCcEE---eccCcc-CCCcccEEEEcCCc
Confidence 6888999988863 45444443 4 688766554 45555442 23 33222 122222 23468999998887
Q ss_pred cccHHHHHHHHHcCC
Q 018445 84 QAQVDTSLKLLKAGK 98 (355)
Q Consensus 84 ~~H~~~~~~al~~Gk 98 (355)
..+.+.+..+++.+-
T Consensus 236 ~~~~~~~~~~l~~~G 250 (329)
T cd08298 236 GALVPAALRAVKKGG 250 (329)
T ss_pred HHHHHHHHHHhhcCC
Confidence 788898999988653
No 427
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=86.31 E-value=3.5 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=28.7
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHH
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAE 47 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~ 47 (355)
||-++|||. |. .+..|++.+ .+|+|| |.++...+.+++
T Consensus 37 rvLd~GCG~-G~--da~~LA~~G--~~V~gv-D~S~~Ai~~~~~ 74 (213)
T TIGR03840 37 RVFVPLCGK-SL--DLAWLAEQG--HRVLGV-ELSEIAVEQFFA 74 (213)
T ss_pred eEEEeCCCc-hh--HHHHHHhCC--CeEEEE-eCCHHHHHHHHH
Confidence 899999995 54 355566543 799888 999999887654
No 428
>PRK06988 putative formyltransferase; Provisional
Probab=86.25 E-value=1.1 Score=40.66 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=44.1
Q ss_pred CCceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHH--------HHHHHHHHHhhhcCCcccccc----Ccchhhh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEE--------SAKSAAEVARKHFADVECVWG----DNGLEQI 68 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~--------~~~~~~~~~~~~~~~~~~~~~----~~~~~el 68 (355)
|.|||.++|.+.++.. .+..|.+.+ .+|++|+..... ..+.++. +. +++.... .....+.
T Consensus 1 ~~mkIvf~Gs~~~a~~-~L~~L~~~~--~~i~~Vvt~~d~~~~~~~~~~v~~~A~---~~--gip~~~~~~~~~~~~~~~ 72 (312)
T PRK06988 1 MKPRAVVFAYHNVGVR-CLQVLLARG--VDVALVVTHEDNPTENIWFGSVAAVAA---EH--GIPVITPADPNDPELRAA 72 (312)
T ss_pred CCcEEEEEeCcHHHHH-HHHHHHhCC--CCEEEEEcCCCCCccCcCCCHHHHHHH---Hc--CCcEEccccCCCHHHHHH
Confidence 6689999999999975 788877643 677777764211 2334443 33 4432210 0123445
Q ss_pred hcCCCccEEEEec
Q 018445 69 IKEDSILGVAVVL 81 (355)
Q Consensus 69 l~~~~~D~V~I~t 81 (355)
+.+.++|+++++.
T Consensus 73 l~~~~~Dliv~~~ 85 (312)
T PRK06988 73 VAAAAPDFIFSFY 85 (312)
T ss_pred HHhcCCCEEEEeh
Confidence 6667788887764
No 429
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.11 E-value=2.4 Score=38.33 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=49.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
++.|+|+|.+|.. .+..++..+ ++++.++|+++++.+.+.+ . . .+ ++++- ....+|+|+-++..
T Consensus 147 ~vlV~G~G~vG~~-a~q~ak~~G--~~~v~~~~~~~~rl~~a~~----~--~---~i---~~~~~-~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGHGTLGRL-LARLTKAAG--GSPPAVWETNPRRRDGATG----Y--E---VL---DPEKD-PRRDYRAIYDASGD 210 (308)
T ss_pred cEEEECCCHHHHH-HHHHHHHcC--CceEEEeCCCHHHHHhhhh----c--c---cc---Chhhc-cCCCCCEEEECCCC
Confidence 6899999999974 555444443 6767777988888665432 1 1 11 11211 22357888888887
Q ss_pred cccHHHHHHHHHcC-CeEE
Q 018445 84 QAQVDTSLKLLKAG-KHVI 101 (355)
Q Consensus 84 ~~H~~~~~~al~~G-khVl 101 (355)
..-.+.+..+++.| +-|+
T Consensus 211 ~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred HHHHHHHHHhhhcCcEEEE
Confidence 65555555555554 4343
No 430
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=85.96 E-value=3.9 Score=37.64 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=53.5
Q ss_pred ceEEEEecccccc-------------------hhccchhhhcCCeEEEEEEEeCCHHHHHH-HHHHHhhhcCCccccccC
Q 018445 3 PRIAILGAGIFVK-------------------TQYIPRLAEISDLVSLKFIWSRSEESAKS-AAEVARKHFADVECVWGD 62 (355)
Q Consensus 3 ~rigiiG~G~~~~-------------------~~~~~~l~~~~~~~~vvai~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 62 (355)
|||.|-|+|+.-- ......|.+.+ .+| .++|+++++.+. ..+..... ++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V-~v~Dr~~~~l~~~~~~~l~~~--Gi~~a--- 72 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDV-VLAEPNRSILSEELWKKVEDA--GVKVV--- 72 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeE-EEEECCHHHhhHHHHHHHHHC--CCEEe---
Confidence 6889999997421 01222333332 454 567998875432 11111122 44322
Q ss_pred cchhhhhcCCCccEEEEecCCccc-HHHHHHHH---HcCCeEEEecCCCCCHHHH
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQAQ-VDTSLKLL---KAGKHVIQEKPAAANISEI 113 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~H-~~~~~~al---~~GkhVl~EKP~a~~~~e~ 113 (355)
+|..+++++ .|+|++++|+..+ .+++...+ ..| .+++.-. +.++...
T Consensus 73 sd~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~~g-~IVId~S-T~~~~~~ 123 (342)
T PRK12557 73 SDDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLPEN-AVICNTC-TVSPVVL 123 (342)
T ss_pred CCHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCCCC-CEEEEec-CCCHHHH
Confidence 677787765 8999999998874 34443332 223 3666643 3344444
No 431
>PRK05442 malate dehydrogenase; Provisional
Probab=85.95 E-value=0.74 Score=42.01 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=22.8
Q ss_pred CceEEEEec-ccccchhccchhhhcCC-----eEEEEEEEeCCH
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISD-----LVSLKFIWSRSE 39 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~-----~~~vvai~d~~~ 39 (355)
++||+|||+ |.+|.. .+..|...+- ..+| .++|.++
T Consensus 4 ~~KV~IiGaaG~VG~~-~a~~l~~~~~~~~~~~~el-~LiDi~~ 45 (326)
T PRK05442 4 PVRVAVTGAAGQIGYS-LLFRIASGDMLGKDQPVIL-QLLEIPP 45 (326)
T ss_pred CcEEEEECCCcHHHHH-HHHHHHhhhhcCCCCccEE-EEEecCC
Confidence 579999998 999975 4544443211 1244 6678854
No 432
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.86 E-value=0.62 Score=42.41 Aligned_cols=74 Identities=19% Similarity=0.102 Sum_probs=39.2
Q ss_pred CceEEEEec-ccccchhccchhhhcCC-----eEEEEEEEeCCHHH--HHHHHHHHhhh----cCCccccccCcchhhhh
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISD-----LVSLKFIWSRSEES--AKSAAEVARKH----FADVECVWGDNGLEQII 69 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~-----~~~vvai~d~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~ell 69 (355)
|+||+|||+ |.+|.. .+..|...+- ..+| .+.|..++. ++..+--.... .+.+. .. ..+|+++-
T Consensus 2 p~KV~IiGa~G~VG~~-~a~~l~~~~~~~~~~~~el-~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~-~~~~~~~~ 77 (322)
T cd01338 2 PVRVAVTGAAGQIGYS-LLFRIASGEMFGPDQPVIL-QLLELPQALKALEGVAMELEDCAFPLLAEIV-IT-DDPNVAFK 77 (322)
T ss_pred CeEEEEECCCcHHHHH-HHHHHHhccccCCCCceEE-EEEecCCcccccceeehhhhhccccccCceE-Ee-cCcHHHhC
Confidence 689999999 999975 5555543221 1244 677985433 43322211111 01111 11 24555543
Q ss_pred cCCCccEEEEecC
Q 018445 70 KEDSILGVAVVLA 82 (355)
Q Consensus 70 ~~~~~D~V~I~tp 82 (355)
. .|+|+|+.-
T Consensus 78 d---aDivvitaG 87 (322)
T cd01338 78 D---ADWALLVGA 87 (322)
T ss_pred C---CCEEEEeCC
Confidence 3 799999843
No 433
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=85.85 E-value=8.7 Score=32.06 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=45.8
Q ss_pred eEEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccccccCcchhhhh----cCCCccEE
Q 018445 4 RIAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECVWGDNGLEQII----KEDSILGV 77 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell----~~~~~D~V 77 (355)
+|.=||||. |. ++..+. +.++ ..++++ |.+++..+.+.++..+. ..++... ..|..+++ .+..+|.|
T Consensus 19 ~ilDiGcG~-G~--~~~~la~~~p~-~~v~gv-D~~~~~l~~a~~~~~~~~l~ni~~i--~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 19 LHLEIGCGK-GR--FLIDMAKQNPD-KNFLGI-EIHTPIVLAANNKANKLGLKNLHVL--CGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred eEEEeCCCc-cH--HHHHHHHhCCC-CCEEEE-EeeHHHHHHHHHHHHHhCCCCEEEE--ccCHHHHHHhhCCCCceeEE
Confidence 677899996 54 333343 4555 677776 99998887776654333 1233222 25666553 34469999
Q ss_pred EEecCCc
Q 018445 78 AVVLAGQ 84 (355)
Q Consensus 78 ~I~tp~~ 84 (355)
++.-|+.
T Consensus 92 ~~~~pdp 98 (194)
T TIGR00091 92 FLNFPDP 98 (194)
T ss_pred EEECCCc
Confidence 9887654
No 434
>PLN03075 nicotianamine synthase; Provisional
Probab=85.77 E-value=3.2 Score=37.15 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=43.3
Q ss_pred eEEEEecccccchhccchhhh-cCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcc--ccccCcchhhhhc-CCCccEEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAE-ISDLVSLKFIWSRSEESAKSAAEVARKHFADVE--CVWGDNGLEQIIK-EDSILGVAV 79 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~-~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ell~-~~~~D~V~I 79 (355)
||.-||||..+.. .+-.+.. .++ .+++++ |.+++..+.+.+.++.. +++. ..+...|.-++.. ..+.|+|++
T Consensus 126 ~VldIGcGpgplt-aiilaa~~~p~-~~~~gi-D~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 126 KVAFVGSGPLPLT-SIVLAKHHLPT-TSFHNF-DIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred EEEEECCCCcHHH-HHHHHHhcCCC-CEEEEE-eCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEE
Confidence 8999999976543 2222323 344 577766 99999988877654221 1221 1222245555442 256999998
Q ss_pred e
Q 018445 80 V 80 (355)
Q Consensus 80 ~ 80 (355)
.
T Consensus 202 ~ 202 (296)
T PLN03075 202 A 202 (296)
T ss_pred e
Confidence 7
No 435
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=85.56 E-value=1.4 Score=39.66 Aligned_cols=74 Identities=19% Similarity=0.097 Sum_probs=41.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCCccc-cccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH--FADVEC-VWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~ell~~~~~D~V~I 79 (355)
+||+|||+|.+|.. ++-.|....- ..=..++|+.++.++-.+-..... +.+... .+...+|+++- +.|+|+|
T Consensus 1 ~KVaviGaG~VG~s-~a~~l~~~~~-~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~---~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSS-LAFLLLLQGL-GSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLK---GADIVVI 75 (313)
T ss_pred CeEEEECCChHHHH-HHHHHhcccc-cceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhc---CCCEEEE
Confidence 58999999999985 6666633221 214467899866665543311111 111111 11112355543 3799999
Q ss_pred ec
Q 018445 80 VL 81 (355)
Q Consensus 80 ~t 81 (355)
+.
T Consensus 76 tA 77 (313)
T COG0039 76 TA 77 (313)
T ss_pred eC
Confidence 96
No 436
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=85.54 E-value=7.1 Score=33.32 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCceEEEEecccccchhccchhh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLA 23 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~ 23 (355)
|-+|||||=||++|....+..+.
T Consensus 1 mvvKiGiiKlGNig~s~~idl~l 23 (277)
T PRK00994 1 MVVKIGIIKLGNIGMSPVIDLLL 23 (277)
T ss_pred CeEEEEEEEecccchHHHHHHHH
Confidence 67899999999999875555554
No 437
>PRK05086 malate dehydrogenase; Provisional
Probab=85.45 E-value=0.97 Score=41.02 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred ceEEEEec-ccccchhccchhhh-cCCeEEEEEEEeCCHHHHHHH-HHHHhhhcCCcccccc--CcchhhhhcCCCccEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAE-ISDLVSLKFIWSRSEESAKSA-AEVARKHFADVECVWG--DNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~-~~~~~~vvai~d~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ell~~~~~D~V 77 (355)
|||+|||+ |.+|.. ....+.. .+. ...+.++|+++. ++.. .+. ...+......+ .+++.+.+.+ .|+|
T Consensus 1 ~KI~IIGAsG~VG~a-ia~~l~~~~~~-~~el~L~d~~~~-~~g~alDl--~~~~~~~~i~~~~~~d~~~~l~~--~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQA-LALLLKTQLPA-GSELSLYDIAPV-TPGVAVDL--SHIPTAVKIKGFSGEDPTPALEG--ADVV 73 (312)
T ss_pred CEEEEECCCCHHHHH-HHHHHHcCCCC-ccEEEEEecCCC-Ccceehhh--hcCCCCceEEEeCCCCHHHHcCC--CCEE
Confidence 69999999 999975 5555533 333 455677787754 2211 111 01111111111 1454455554 9999
Q ss_pred EEecCC
Q 018445 78 AVVLAG 83 (355)
Q Consensus 78 ~I~tp~ 83 (355)
+++.-.
T Consensus 74 IitaG~ 79 (312)
T PRK05086 74 LISAGV 79 (312)
T ss_pred EEcCCC
Confidence 998654
No 438
>TIGR03586 PseI pseudaminic acid synthase.
Probab=85.31 E-value=12 Score=34.18 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=51.0
Q ss_pred hhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 67 QIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 67 ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
+++++-++|++=|++.+-.++++++++.+.||+|++=..++ |++|.+..++..++.
T Consensus 104 d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~-t~~Ei~~Av~~i~~~ 159 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIA-TLEEIQEAVEACREA 159 (327)
T ss_pred HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHHHC
Confidence 44566779999999999999999999999999999999995 999999999999875
No 439
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.24 E-value=2.8 Score=40.30 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=49.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
||.|||+|..|.. -+..|.+.+ .+| .++|..+.....+. +. ++.... .+. +-+. +.|+|+++..-
T Consensus 11 ~i~viG~G~~G~~-~a~~l~~~G--~~v-~~~D~~~~~~~~l~----~~--g~~~~~--~~~-~~~~--~~d~vv~sp~i 75 (460)
T PRK01390 11 TVAVFGLGGSGLA-TARALVAGG--AEV-IAWDDNPASRAKAA----AA--GITTAD--LRT-ADWS--GFAALVLSPGV 75 (460)
T ss_pred EEEEEeecHhHHH-HHHHHHHCC--CEE-EEECCChhhHHHHH----hc--CccccC--CCh-hHHc--CCCEEEECCCC
Confidence 7999999999976 466666654 565 55786644332221 12 332111 111 2233 47866654311
Q ss_pred -ccc---HHHHHHHHHcCCeEEEe
Q 018445 84 -QAQ---VDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 -~~H---~~~~~~al~~GkhVl~E 103 (355)
..| ...+.++.++|++|+-+
T Consensus 76 ~~~~~~~~~~v~~a~~~gi~i~~~ 99 (460)
T PRK01390 76 PLTHPKPHWVVDLARAAGVEVIGD 99 (460)
T ss_pred CccCCcccHHHHHHHHcCCcEEeH
Confidence 222 24788889999999876
No 440
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=85.07 E-value=10 Score=31.74 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCceEEEEecccccchhccchhhh-----cCCeEEEEEE-EeCCHHHHHHHHH-HHhhhcCCccccc-------cCcchh
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAE-----ISDLVSLKFI-WSRSEESAKSAAE-VARKHFADVECVW-------GDNGLE 66 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~-----~~~~~~vvai-~d~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~ 66 (355)
|-+|||+|-||++|....+..|.. .+-.++|++- .--+|+..+++.. .++++.|++.... +-...+
T Consensus 1 ~vvkig~ik~GniGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kAR 80 (277)
T COG1927 1 MVVKIGFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAR 80 (277)
T ss_pred CeeEEEEEEecccchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCchHHH
Confidence 557999999999998755555541 1112555542 2235565554332 2233333321110 113456
Q ss_pred hhhcCCCccEEEEecCCcc
Q 018445 67 QIIKEDSILGVAVVLAGQA 85 (355)
Q Consensus 67 ell~~~~~D~V~I~tp~~~ 85 (355)
|++++.++-+++|.-.|..
T Consensus 81 E~l~~s~~PaiiigDaPg~ 99 (277)
T COG1927 81 EILSDSDVPAIIIGDAPGL 99 (277)
T ss_pred HHHhhcCCCEEEecCCccc
Confidence 6666666666666665543
No 441
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.01 E-value=9.8 Score=34.86 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=71.7
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccc-------cCcchhhhhcCCCc
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVW-------GDNGLEQIIKEDSI 74 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ell~~~~~ 74 (355)
++||.||......+......|...++ +++++......+..+.+. +..|++-.-- +-+.++.++.....
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~-i~vv~~a~ng~~a~~~~~----~~~PDVi~ld~emp~mdgl~~l~~im~~~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPD-IEVVGTARNGREAIDKVK----KLKPDVITLDVEMPVMDGLEALRKIMRLRPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCC-eEEEEecCCHHHHHHHHH----hcCCCEEEEecccccccHHHHHHHHhcCCCC
Confidence 47999999888777644455555555 899998765544444443 4555542110 11456677777678
Q ss_pred cEEEEecCCcccHHHHHHHHHcCCeEEEecCCC
Q 018445 75 LGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAA 107 (355)
Q Consensus 75 D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a 107 (355)
=+|++++-+..+.+.+.+|++.|.-=++-||-.
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 889999999999999999999998778889973
No 442
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=84.99 E-value=0.68 Score=42.69 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=53.5
Q ss_pred ceEEEEec-ccccchhccchhhhcCC--eEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEE
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISD--LVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAV 79 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~--~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I 79 (355)
+||||||+ |-.|+. ++..|..+++ ..+++.+.+........ .+.+..... .++++.-.-.++|+|+-
T Consensus 1 ~~VavvGATG~VG~~-ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-------~f~~~~~~v--~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSV-LMQRMQEERDFDAIRPVFFSTSQLGQAAP-------SFGGTTGTL--QDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHH-HHHHHHhCCCCccccEEEEEchhhCCCcC-------CCCCCcceE--EcCcccccccCCCEEEE
Confidence 48999996 777876 8887874443 03344444432211100 111111111 23322211145999999
Q ss_pred ecCCcccHHHHHHHHHcCCe-EEEe
Q 018445 80 VLAGQAQVDTSLKLLKAGKH-VIQE 103 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~Gkh-Vl~E 103 (355)
|.+.....++..++.++|.. +.+.
T Consensus 71 a~g~~~s~~~~p~~~~aG~~~~VID 95 (366)
T TIGR01745 71 CQGGDYTNEIYPKLRESGWQGYWID 95 (366)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999963 4443
No 443
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.89 E-value=1.4 Score=39.92 Aligned_cols=74 Identities=20% Similarity=0.155 Sum_probs=39.9
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCH--HHHHHHHHHHhh---hcC-CccccccCcchhhhhcCCCcc
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSE--ESAKSAAEVARK---HFA-DVECVWGDNGLEQIIKEDSIL 75 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~--~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ell~~~~~D 75 (355)
|||+|||+ |..|.. .+..+...+...+|+.+ |+++ ++++...-.... ..+ ..... ..+++++ +.+ .|
T Consensus 1 ~kI~IiGatG~vG~~-~a~~l~~~g~~~~v~lv-d~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~~~-l~~--aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSA-TALLLAKEDVVKEINLI-SRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDLSD-VAG--SD 74 (309)
T ss_pred CEEEEECCCChHHHH-HHHHHHhCCCCCEEEEE-ECcccccccccccchhhhchhccCCCcEEE-ECCCHHH-hCC--CC
Confidence 68999997 999975 66666655432245444 7644 444332211101 011 11111 1246776 554 78
Q ss_pred EEEEecC
Q 018445 76 GVAVVLA 82 (355)
Q Consensus 76 ~V~I~tp 82 (355)
+|+++..
T Consensus 75 iViitag 81 (309)
T cd05294 75 IVIITAG 81 (309)
T ss_pred EEEEecC
Confidence 8888864
No 444
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.80 E-value=3.5 Score=39.97 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=32.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHH
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAE 47 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~ 47 (355)
-||.|+|+|.+|.. .+..++..+ .+ |-++|+++++.+.+.+
T Consensus 166 ~kVlViGaG~iGL~-Ai~~Ak~lG--A~-V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLA-AIGAAGSLG--AI-VRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHH-HHHHHHHCC--CE-EEEEeCCHHHHHHHHH
Confidence 48999999999975 677777765 45 5677999999887654
No 445
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=84.75 E-value=10 Score=31.83 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=44.9
Q ss_pred ceEEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHHHHHHHHHHhhhc-CCccccccCcch-hhh---hcCCCccE
Q 018445 3 PRIAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEESAKSAAEVARKHF-ADVECVWGDNGL-EQI---IKEDSILG 76 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~el---l~~~~~D~ 76 (355)
.+|.=||||. |. +...+. ..++ .+++++ |.+++..+.+.+..+... +++... ..|. +.+ +.+..+|+
T Consensus 42 ~~VLDiGcGt-G~--~~~~la~~~p~-~~v~gV-D~s~~~i~~a~~~~~~~~~~~v~~~--~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 42 PIHLEIGFGK-GE--FLVEMAKANPD-INFIGI-EVHEPGVGKALKKIEEEGLTNLRLL--CGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CeEEEEccCC-CH--HHHHHHHHCCC-ccEEEE-EechHHHHHHHHHHHHcCCCCEEEE--ecCHHHHHHHHcCccccce
Confidence 3688899996 43 333444 3344 577666 999999988877554332 233222 2565 544 34566999
Q ss_pred EEEecCC
Q 018445 77 VAVVLAG 83 (355)
Q Consensus 77 V~I~tp~ 83 (355)
|++.-|.
T Consensus 115 V~~~~~~ 121 (202)
T PRK00121 115 IYLNFPD 121 (202)
T ss_pred EEEECCC
Confidence 9876543
No 446
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.63 E-value=0.61 Score=42.49 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=39.7
Q ss_pred ceEEEEec-ccccchhccchhhhcCCeEE-----EEEEEeCCH--HHHHHHHHHHhhh-cCCccccccCcchhhhhcCCC
Q 018445 3 PRIAILGA-GIFVKTQYIPRLAEISDLVS-----LKFIWSRSE--ESAKSAAEVARKH-FADVECVWGDNGLEQIIKEDS 73 (355)
Q Consensus 3 ~rigiiG~-G~~~~~~~~~~l~~~~~~~~-----vvai~d~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell~~~~ 73 (355)
+||+|||+ |.+|.. ....|...+- +. -+.++|+++ ++++..+...... .|........++..+.+++
T Consensus 1 ~KV~IiGAaG~VG~~-~a~~L~~~~~-~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~-- 76 (323)
T cd00704 1 LHVLITGAAGQIGYN-LLFLIASGEL-FGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD-- 76 (323)
T ss_pred CEEEEECCCcHHHHH-HHHHHHhCCc-cCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC--
Confidence 58999999 999975 5555554321 22 246779887 5544332111011 0111000001233455554
Q ss_pred ccEEEEecC
Q 018445 74 ILGVAVVLA 82 (355)
Q Consensus 74 ~D~V~I~tp 82 (355)
.|+|+++.-
T Consensus 77 aDiVVitAG 85 (323)
T cd00704 77 VDVAILVGA 85 (323)
T ss_pred CCEEEEeCC
Confidence 899998843
No 447
>PRK14030 glutamate dehydrogenase; Provisional
Probab=84.63 E-value=13 Score=35.44 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=71.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEE-------Ee---CCHHHHHHHHHHHhh----------hcCCccccccC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFI-------WS---RSEESAKSAAEVARK----------HFADVECVWGD 62 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai-------~d---~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 62 (355)
.||+|=|+|+.|.. ....|.+.+ .+|++| +| .+.++.+.+.+.-.+ .+|+. .+
T Consensus 229 ~~vaIQGfGnVG~~-aA~~L~e~G--akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga--~~-- 301 (445)
T PRK14030 229 KTVAISGFGNVAWG-AATKATELG--AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGS--TF-- 301 (445)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCC--CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCC--EE--
Confidence 58999999999974 566666653 799997 55 455553222221101 22332 22
Q ss_pred cchhhhhcCCCccEEEEe-cCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH
Q 018445 63 NGLEQIIKEDSILGVAVV-LAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALS 118 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~-tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~ 118 (355)
-+-+++++ .++|+.+=| +.+.-+.+-+....+.+..+++|--=..+..++.+++.
T Consensus 302 i~~~~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~ 357 (445)
T PRK14030 302 FAGKKPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFI 357 (445)
T ss_pred cCCcccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 24567777 468888844 77788999999988899999999755555556766653
No 448
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=84.49 E-value=12 Score=33.48 Aligned_cols=146 Identities=17% Similarity=0.078 Sum_probs=87.5
Q ss_pred EEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHH-------------------HHHHHHHhhhcCCcc-----ccc
Q 018445 5 IAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESA-------------------KSAAEVARKHFADVE-----CVW 60 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~-------------------~~~~~~~~~~~~~~~-----~~~ 60 (355)
|.|||+|..|. +.+..|.+.+ ++=.-|.|.+.-.. +-+.+-+++..|-+. ..|
T Consensus 77 VVVVG~GgVGS-wv~nmL~RSG--~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~ 153 (430)
T KOG2018|consen 77 VVVVGAGGVGS-WVANMLLRSG--VQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLW 153 (430)
T ss_pred EEEEecCchhH-HHHHHHHHhc--CceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhc
Confidence 78999999996 3555555543 33334445544222 222221222223221 112
Q ss_pred cCcchhhhhcCCCccEEEEecCC-cccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecc
Q 018445 61 GDNGLEQIIKEDSILGVAVVLAG-QAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENY 139 (355)
Q Consensus 61 ~~~~~~ell~~~~~D~V~I~tp~-~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~ 139 (355)
.-++-++|+. .++|.|+-|-.+ ++-.++...|-.+|..|+.---.+ |+.- |+.+-+.-=...
T Consensus 154 ~~~s~edll~-gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaa------------aksD----PTrv~v~Dis~t 216 (430)
T KOG2018|consen 154 TSSSEEDLLS-GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAA------------AKSD----PTRVNVADISET 216 (430)
T ss_pred CCCchhhhhc-CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCcc------------ccCC----Cceeehhhcccc
Confidence 1256788887 569999999888 578999999999999998753222 1210 123333333445
Q ss_pred cCchHHHHHHHHHHHhCCeeEEEEEEeeccC
Q 018445 140 RFEPAFVECKKLIAEIGDMMSVQVIVEGSMN 170 (355)
Q Consensus 140 r~~p~~~~~k~~i~~iG~i~~v~~~~~~~~~ 170 (355)
-++|..+..|+.++..|=...|-+.|..-.+
T Consensus 217 ~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekp 247 (430)
T KOG2018|consen 217 EEDPLSRSVRRRLRKRGIEGGIPVVFSLEKP 247 (430)
T ss_pred ccCcHHHHHHHHHHHhccccCCceEEecCCC
Confidence 5789999999999875655556666554333
No 449
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=84.49 E-value=1.4 Score=41.04 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=47.9
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHH-HHHHHHhhhcCCccccccCcc---hhhhhcCCCccEEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAK-SAAEVARKHFADVECVWGDNG---LEQIIKEDSILGVAV 79 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~ell~~~~~D~V~I 79 (355)
||+|||.|..+.. ++..+.+.+ ++++.+ |.++.... .+++ +.+. . . +.| +.++.+..++|+|+.
T Consensus 1 kililG~g~~~~~-l~~aa~~~G--~~v~~~-d~~~~~~~~~~ad---~~~~-~--~--~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGSGELGKE-VAIEAQRLG--VEVIAV-DRYANAPAMQVAH---RSYV-I--N--MLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECCCHHHHH-HHHHHHHcC--CEEEEE-eCCCCCchhhhCc---eEEE-c--C--CCCHHHHHHHHHHhCCCEEEe
Confidence 7999999988875 677777764 676544 66554322 2222 2210 1 1 145 444566667998865
Q ss_pred ecCCcccHHHHHHHHHcCCeEE
Q 018445 80 VLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 80 ~tp~~~H~~~~~~al~~GkhVl 101 (355)
.. ..........+-+.|.+++
T Consensus 69 ~~-e~v~~~~~~~l~~~g~~~~ 89 (380)
T TIGR01142 69 EI-EAIATDALFELEKEGYFVV 89 (380)
T ss_pred cc-CccCHHHHHHHHhcCCeeC
Confidence 43 3334444444455676543
No 450
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.47 E-value=4.8 Score=36.68 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=54.2
Q ss_pred eEEEEecccccchhccchhhhcCCeEE-EEEEEeCCHHHHHHHHHHHhhhcCCccccccCc--chh---hhhcCCCccEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVS-LKFIWSRSEESAKSAAEVARKHFADVECVWGDN--GLE---QIIKEDSILGV 77 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~-vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---ell~~~~~D~V 77 (355)
+|.|+|+|.+|.. .+..++..+ .+ |++ .++++++.+.+.+ . ++...+.+. +.+ ++.....+|+|
T Consensus 166 ~vlV~G~G~vG~~-~~~~ak~~G--~~~vi~-~~~~~~~~~~~~~----~--ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 166 TVLVVGAGPVGLG-ALMLARALG--AEDVIG-VDPSPERLELAKA----L--GADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred EEEEECCCHHHHH-HHHHHHHcC--CCEEEE-ECCCHHHHHHHHH----h--CCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 7899999998874 555555544 55 655 5778888766543 2 222221111 122 33333469999
Q ss_pred EEecCCcccHHHHHHHHHcCCeEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl 101 (355)
+-++........+..+++.+-++.
T Consensus 236 id~~g~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 236 IECSGNTAARRLALEAVRPWGRLV 259 (339)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEE
Confidence 999888777666777777764443
No 451
>PLN02366 spermidine synthase
Probab=84.33 E-value=9.5 Score=34.51 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=45.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-----cCCccccccCcchhhhhcC---CCc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-----FADVECVWGDNGLEQIIKE---DSI 74 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ell~~---~~~ 74 (355)
-||.+||+|.-+ .+..+.++++ +.-+-++|.|++-.+.+.+.+... .|.+.... .|..+.+++ ...
T Consensus 93 krVLiIGgG~G~---~~rellk~~~-v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~--~Da~~~l~~~~~~~y 166 (308)
T PLN02366 93 KKVLVVGGGDGG---VLREIARHSS-VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI--GDGVEFLKNAPEGTY 166 (308)
T ss_pred CeEEEEcCCccH---HHHHHHhCCC-CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE--ChHHHHHhhccCCCC
Confidence 489999999744 3455666665 555567799988777665532111 12333322 565555542 358
Q ss_pred cEEEEecCC
Q 018445 75 LGVAVVLAG 83 (355)
Q Consensus 75 D~V~I~tp~ 83 (355)
|+|++-.+.
T Consensus 167 DvIi~D~~d 175 (308)
T PLN02366 167 DAIIVDSSD 175 (308)
T ss_pred CEEEEcCCC
Confidence 999885443
No 452
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.19 E-value=11 Score=27.38 Aligned_cols=77 Identities=21% Similarity=0.127 Sum_probs=46.0
Q ss_pred eEEEEec--ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 4 RIAILGA--GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 4 rigiiG~--G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
+|.|||. ..... +-..+.+.+ .+++.. .++....+.. ..++..+.+ .|+|++.|
T Consensus 1 ~vliVGG~~~~~~~--~~~~~~~~G--~~~~~h-g~~~~~~~~~-----------------~~l~~~i~~--aD~VIv~t 56 (97)
T PF10087_consen 1 SVLIVGGREDRERR--YKRILEKYG--GKLIHH-GRDGGDEKKA-----------------SRLPSKIKK--ADLVIVFT 56 (97)
T ss_pred CEEEEcCCcccHHH--HHHHHHHcC--CEEEEE-ecCCCCccch-----------------hHHHHhcCC--CCEEEEEe
Confidence 5788887 54432 566666655 355444 3321110000 125666665 79999999
Q ss_pred CCcccHHH---HHHHHHcCCeEEEec
Q 018445 82 AGQAQVDT---SLKLLKAGKHVIQEK 104 (355)
Q Consensus 82 p~~~H~~~---~~~al~~GkhVl~EK 104 (355)
..-.|..+ -..|-+.|++++.-|
T Consensus 57 ~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 57 DYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 99888543 346666688877766
No 453
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=84.03 E-value=2.4 Score=39.82 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=47.9
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHH-HHHHHHhhhcCCccccccCcc---hhhhhcCCCccEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAK-SAAEVARKHFADVECVWGDNG---LEQIIKEDSILGV 77 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~ell~~~~~D~V 77 (355)
.+||+|||.|..+.. ++.++.+.+ ++++ ++|.+++... ..++ ..+ .+. +.| +.++++..++|+|
T Consensus 12 ~~~ilIiG~g~~~~~-~~~a~~~~G--~~v~-~~~~~~~~~~~~~ad---~~~-~~~----~~d~~~l~~~~~~~~id~v 79 (395)
T PRK09288 12 ATRVMLLGSGELGKE-VAIEAQRLG--VEVI-AVDRYANAPAMQVAH---RSH-VID----MLDGDALRAVIEREKPDYI 79 (395)
T ss_pred CCEEEEECCCHHHHH-HHHHHHHCC--CEEE-EEeCCCCCchHHhhh---heE-ECC----CCCHHHHHHHHHHhCCCEE
Confidence 368999999987765 777777764 6775 4455554322 2222 111 111 134 4455666679988
Q ss_pred EEecCCcccHHHHHHHHHcCCeE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHV 100 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhV 100 (355)
+.... ......+..+.+.|.++
T Consensus 80 i~~~e-~~~~~~~~~l~~~g~~~ 101 (395)
T PRK09288 80 VPEIE-AIATDALVELEKEGFNV 101 (395)
T ss_pred EEeeC-cCCHHHHHHHHhcCCee
Confidence 75433 33334444555556554
No 454
>PTZ00325 malate dehydrogenase; Provisional
Probab=83.99 E-value=1.2 Score=40.58 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=22.5
Q ss_pred eEEEEec-ccccchhccchhhhcCCeEEEEEEEeCC
Q 018445 4 RIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRS 38 (355)
Q Consensus 4 rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~ 38 (355)
||+|||+ |++|.. ....|...+- ..-+.++|++
T Consensus 10 KI~IiGaaG~VGs~-~a~~l~~~~~-~~elvL~Di~ 43 (321)
T PTZ00325 10 KVAVLGAAGGIGQP-LSLLLKQNPH-VSELSLYDIV 43 (321)
T ss_pred EEEEECCCCHHHHH-HHHHHhcCCC-CCEEEEEecC
Confidence 9999999 999975 5666653332 3334666774
No 455
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=83.93 E-value=1.8 Score=39.22 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=23.3
Q ss_pred eEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCH
Q 018445 4 RIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSE 39 (355)
Q Consensus 4 rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~ 39 (355)
||+|||+ |.+|.. ..-.|...+- +.=..++|+++
T Consensus 1 KV~IiGaaG~VG~~-~a~~l~~~~~-~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQP-LSLLLKLQPY-VSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHH-HHHHHHhCCC-CcEEEEecCCC
Confidence 7999999 999975 4444544332 34447779877
No 456
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=83.67 E-value=3.6 Score=35.40 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=49.5
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAV 79 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I 79 (355)
.+||.=||||. |. ....+++.+ ..|+|+ |.+++..+.+...+.+. ++...|-..+.||+.+. ...|+|+.
T Consensus 60 g~~vLDvGCGg-G~--Lse~mAr~G--a~Vtgi-D~se~~I~~Ak~ha~e~--gv~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 60 GLRVLDVGCGG-GI--LSEPLARLG--ASVTGI-DASEKPIEVAKLHALES--GVNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCeEEEecCCc-cH--hhHHHHHCC--CeeEEe-cCChHHHHHHHHhhhhc--cccccchhhhHHHHHhcCCCccEEEE
Confidence 35788899994 53 566777765 799888 99998888776544344 44334544688999987 67887764
No 457
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.55 E-value=3.1 Score=38.19 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=53.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccC--cchh---hhhcCCCcc-EE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGD--NGLE---QIIKEDSIL-GV 77 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---ell~~~~~D-~V 77 (355)
+|.|.|+|.+|.. .+...+..+ .+++.+.++++++.+.+.+ . +....+.+ .+.+ ++.....+| +|
T Consensus 163 ~vlV~G~g~vG~~-~~~~a~~~G--~~~v~~~~~~~~~~~~~~~----~--Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 163 NVIIIGAGTIGLL-AIQCAVALG--AKSVTAIDINSEKLALAKS----L--GAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred EEEEECCCHHHHH-HHHHHHHcC--CCeEEEECCCHHHHHHHHH----c--CCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 7889999998864 455444443 6655666888888776533 2 22111111 1122 233334577 77
Q ss_pred EEecCCcccHHHHHHHHHcC-CeEEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAG-KHVIQ 102 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~G-khVl~ 102 (355)
+-++....+...+..+++.| +=|++
T Consensus 234 ~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 234 LETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 77777766777777777776 33444
No 458
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.54 E-value=2.3 Score=38.45 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=47.4
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhh---hcC--CccccccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARK---HFA--DVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~ell~~~~~D~V 77 (355)
|||.|+|+|.+|.. +...|.+.+. .|-+.-|++. ++++.+..-. ... ...... .+-.+-+ ...|+|
T Consensus 1 mkI~IlGaGAvG~l-~g~~L~~~g~---~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~--~~~~~~~--~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSL-LGARLAKAGH---DVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVA--ATDAEAL--GPADLV 71 (307)
T ss_pred CeEEEECCcHHHHH-HHHHHHhCCC---eEEEEecHHH-HHHHHhCCeEEecCCCcccccccc--ccChhhc--CCCCEE
Confidence 69999999999974 7777776652 3344455544 6666552100 000 000000 1112222 258999
Q ss_pred EEecCCcccHHHHHHHHH
Q 018445 78 AVVLAGQAQVDTSLKLLK 95 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~ 95 (355)
+|++-...-.+.+.....
T Consensus 72 iv~vKa~q~~~al~~l~~ 89 (307)
T COG1893 72 IVTVKAYQLEEALPSLAP 89 (307)
T ss_pred EEEeccccHHHHHHHhhh
Confidence 999988776666655433
No 459
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=83.47 E-value=18 Score=34.18 Aligned_cols=96 Identities=19% Similarity=0.090 Sum_probs=53.5
Q ss_pred eEEEEe-cccccchhccchhhhcCCeE-EEEEEEeCCHHHHHHHHHHHhhh--cCCcc-ccccC---cchh----hhhcC
Q 018445 4 RIAILG-AGIFVKTQYIPRLAEISDLV-SLKFIWSRSEESAKSAAEVARKH--FADVE-CVWGD---NGLE----QIIKE 71 (355)
Q Consensus 4 rigiiG-~G~~~~~~~~~~l~~~~~~~-~vvai~d~~~~~~~~~~~~~~~~--~~~~~-~~~~~---~~~~----ell~~ 71 (355)
+|.|+| +|.+|.. .+..++..+-+. +|+ +.|+++++.+.+.+..... ..++. ..+.+ +++. ++...
T Consensus 178 ~VlV~G~~G~vG~~-aiq~ak~~G~g~~~Vi-~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g 255 (410)
T cd08238 178 NTAILGGAGPMGLM-AIDYAIHGPIGPSLLV-VTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG 255 (410)
T ss_pred EEEEEeCCCHHHHH-HHHHHHhcccCCceEE-EEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence 688998 6999974 555555432112 454 4588888887765420000 00111 01111 1232 23333
Q ss_pred CCccEEEEecCCcccHHHHHHHHHc-CCeEE
Q 018445 72 DSILGVAVVLAGQAQVDTSLKLLKA-GKHVI 101 (355)
Q Consensus 72 ~~~D~V~I~tp~~~H~~~~~~al~~-GkhVl 101 (355)
..+|+|+.++........+..+++. |.-|+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEE
Confidence 4699999998876677777888874 54443
No 460
>PLN02827 Alcohol dehydrogenase-like
Probab=83.38 E-value=13 Score=34.70 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=52.0
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCc----chhhhhc---CCCccE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDN----GLEQIIK---EDSILG 76 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ell~---~~~~D~ 76 (355)
+|.|+|+|.+|.. .+...+..+ +..+.+.++++++.+.+.+ . ++.....+. ++.+.+. ...+|+
T Consensus 196 ~VlV~G~G~vG~~-~iqlak~~G--~~~vi~~~~~~~~~~~a~~----l--Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~ 266 (378)
T PLN02827 196 SVVIFGLGTVGLS-VAQGAKLRG--ASQIIGVDINPEKAEKAKT----F--GVTDFINPNDLSEPIQQVIKRMTGGGADY 266 (378)
T ss_pred EEEEECCCHHHHH-HHHHHHHcC--CCeEEEECCCHHHHHHHHH----c--CCcEEEcccccchHHHHHHHHHhCCCCCE
Confidence 6889999999974 555545443 5544556778887766543 2 222111111 2223221 126899
Q ss_pred EEEecCCcccHHHHHHHHHcC
Q 018445 77 VAVVLAGQAQVDTSLKLLKAG 97 (355)
Q Consensus 77 V~I~tp~~~H~~~~~~al~~G 97 (355)
|+-++........+..+++.|
T Consensus 267 vid~~G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 267 SFECVGDTGIATTALQSCSDG 287 (378)
T ss_pred EEECCCChHHHHHHHHhhccC
Confidence 999998777777778878776
No 461
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.31 E-value=11 Score=34.88 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcc---hhhhhcCCCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNG---LEQIIKEDSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ell~~~~~D~V~I~ 80 (355)
+|.|.|+|.+|.. .+...+..+ .+++++.+ +.++...+++ +. ++...+.+.+ +.++.. .+|+|+-+
T Consensus 186 ~VlV~G~G~vG~~-avq~Ak~~G--a~vi~~~~-~~~~~~~~~~---~~--Ga~~vi~~~~~~~~~~~~~--~~D~vid~ 254 (360)
T PLN02586 186 HLGVAGLGGLGHV-AVKIGKAFG--LKVTVISS-SSNKEDEAIN---RL--GADSFLVSTDPEKMKAAIG--TMDYIIDT 254 (360)
T ss_pred EEEEECCCHHHHH-HHHHHHHCC--CEEEEEeC-CcchhhhHHH---hC--CCcEEEcCCCHHHHHhhcC--CCCEEEEC
Confidence 6889999999974 555555543 57766544 4444333332 23 3322211122 233332 48999998
Q ss_pred cCCcccHHHHHHHHHcCCe
Q 018445 81 LAGQAQVDTSLKLLKAGKH 99 (355)
Q Consensus 81 tp~~~H~~~~~~al~~Gkh 99 (355)
+......+.+..+++.|=.
T Consensus 255 ~g~~~~~~~~~~~l~~~G~ 273 (360)
T PLN02586 255 VSAVHALGPLLGLLKVNGK 273 (360)
T ss_pred CCCHHHHHHHHHHhcCCcE
Confidence 8765556667777777633
No 462
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.25 E-value=3.2 Score=36.81 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=46.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEE-EEEEEeCCHHHHHHHHHHHhhhcCCccccccCcch-h---hhhcCCCccEEE
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVS-LKFIWSRSEESAKSAAEVARKHFADVECVWGDNGL-E---QIIKEDSILGVA 78 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~-vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---ell~~~~~D~V~ 78 (355)
+|.|+|+|.+|.. .+..++..+ ++ |+++ ++++++.+.+.+ . +......+.+. + ++.....+|+|+
T Consensus 123 ~VlV~G~G~vG~~-~~~~ak~~G--~~~Vi~~-~~~~~r~~~a~~----~--Ga~~~i~~~~~~~~~~~~~~~~g~d~vi 192 (280)
T TIGR03366 123 RVLVVGAGMLGLT-AAAAAAAAG--AARVVAA-DPSPDRRELALS----F--GATALAEPEVLAERQGGLQNGRGVDVAL 192 (280)
T ss_pred EEEEECCCHHHHH-HHHHHHHcC--CCEEEEE-CCCHHHHHHHHH----c--CCcEecCchhhHHHHHHHhCCCCCCEEE
Confidence 6899999999964 555544443 55 5444 888888766543 2 22211111111 1 122223477777
Q ss_pred EecCCcccHHHHHHHHHcC
Q 018445 79 VVLAGQAQVDTSLKLLKAG 97 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~G 97 (355)
-++....-.+.+..+++.|
T Consensus 193 d~~G~~~~~~~~~~~l~~~ 211 (280)
T TIGR03366 193 EFSGATAAVRACLESLDVG 211 (280)
T ss_pred ECCCChHHHHHHHHHhcCC
Confidence 7776554455556666554
No 463
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=2.1 Score=38.30 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred hhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEE--EecCCccc----HHHHHHHH
Q 018445 21 RLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVA--VVLAGQAQ----VDTSLKLL 94 (355)
Q Consensus 21 ~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~--I~tp~~~H----~~~~~~al 94 (355)
.|.+....+.++++||+....-+...+ ....+.+++.. +|.+++++... |+.+ |..|-..| .+.+++|+
T Consensus 20 Gllr~~~~~~iv~vvD~~~~~~~~~~~-l~~~~~~vpii---~s~~~~~e~~~-e~liIgia~~gG~~~~~~~~~i~eAl 94 (339)
T COG3367 20 GLLRYSEKYAIVAVVDRREAGDDTPRE-LGGDKADVPII---SSVEEALEGLA-EALIIGIAPPGGVLPESWREYIVEAL 94 (339)
T ss_pred hhhcccccceeeeEEeeeccccccHHH-hCCccCCCccc---ccHHHHHhcCc-ceEEEEeecCCCcCcHHHHHHHHHHH
Confidence 334444558999999998766433222 22223455543 78899988643 5544 44554433 36689999
Q ss_pred HcCCeEEEecCCCCCHHHHHHHHHHhhcc
Q 018445 95 KAGKHVIQEKPAAANISEIENALSRYNSI 123 (355)
Q Consensus 95 ~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 123 (355)
++|.+|..===. -+++--++.++|++.
T Consensus 95 ~~G~nVvsglh~--~ls~dp~~~k~A~~~ 121 (339)
T COG3367 95 EAGMNVVSGLHS--FLSDDPEFVKLAERT 121 (339)
T ss_pred HhCchhhhhhHH--HhhcChHHHHHHHHc
Confidence 999877542111 144445677888883
No 464
>PRK01581 speE spermidine synthase; Validated
Probab=83.16 E-value=26 Score=32.51 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=45.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH------hh--hcCCccccccCcchhhhhcC--C
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA------RK--HFADVECVWGDNGLEQIIKE--D 72 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~ell~~--~ 72 (355)
-||.+||+|.-+ .+..+.+.+. +.-+-++|.|++-.+.+.+.. +. ..|.+.... .|..+.+.. .
T Consensus 152 krVLIIGgGdG~---tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi--~Da~~fL~~~~~ 225 (374)
T PRK01581 152 KRVLILGGGDGL---ALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV--CDAKEFLSSPSS 225 (374)
T ss_pred CEEEEECCCHHH---HHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE--CcHHHHHHhcCC
Confidence 489999999533 2444555554 444456799998887766410 00 123443332 566665543 4
Q ss_pred CccEEEEecCCc
Q 018445 73 SILGVAVVLAGQ 84 (355)
Q Consensus 73 ~~D~V~I~tp~~ 84 (355)
..|+|++-.|+.
T Consensus 226 ~YDVIIvDl~DP 237 (374)
T PRK01581 226 LYDVIIIDFPDP 237 (374)
T ss_pred CccEEEEcCCCc
Confidence 589999886653
No 465
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=83.10 E-value=5.2 Score=34.26 Aligned_cols=129 Identities=7% Similarity=-0.008 Sum_probs=67.5
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchh-hhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLE-QIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ell~~~~~D~V~I~t 81 (355)
.+|.|||.|.++.+ =+..|.+.+. +|+-|...-.+..+.+++ .. .+... ..+|+ +-++ +.+.|+++|
T Consensus 26 ~~VLVVGGG~VA~R-K~~~Ll~~gA--~VtVVap~i~~el~~l~~---~~--~i~~~--~r~~~~~dl~--g~~LViaAT 93 (223)
T PRK05562 26 IKVLIIGGGKAAFI-KGKTFLKKGC--YVYILSKKFSKEFLDLKK---YG--NLKLI--KGNYDKEFIK--DKHLIVIAT 93 (223)
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCC--EEEEEcCCCCHHHHHHHh---CC--CEEEE--eCCCChHHhC--CCcEEEECC
Confidence 47999999999976 5677776553 444443332233333332 11 12111 12222 2233 489999999
Q ss_pred CCc-ccHHHHHHHHHcCCeEEE-ecCCCCCHHHHHHHH-HHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH
Q 018445 82 AGQ-AQVDTSLKLLKAGKHVIQ-EKPAAANISEIENAL-SRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 82 p~~-~H~~~~~~al~~GkhVl~-EKP~a~~~~e~~~l~-~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 154 (355)
.+. ....+...|-++|+.|.+ ..| +.+.=+. +..++ .++.+.|...-.---..+.+|+.|++
T Consensus 94 dD~~vN~~I~~~a~~~~~lvn~vd~p-----~~~dFi~PAiv~r------g~l~IaIST~G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 94 DDEKLNNKIRKHCDRLYKLYIDCSDY-----KKGLCIIPYQRST------KNFVFALNTKGGSPKTSVFIGEKVKN 158 (223)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcCCc-----ccCeEEeeeEEec------CCEEEEEECCCcCcHHHHHHHHHHHH
Confidence 885 555556666566766553 222 2221111 22333 35666666555433334566666654
No 466
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.93 E-value=1 Score=41.06 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=40.4
Q ss_pred CceEEEEec-ccccchhccchhhhcCC-----eEEEEEEEeCCHH--HHHHHHHHHhh----hcCCccccccCcchhhhh
Q 018445 2 APRIAILGA-GIFVKTQYIPRLAEISD-----LVSLKFIWSRSEE--SAKSAAEVARK----HFADVECVWGDNGLEQII 69 (355)
Q Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~-----~~~vvai~d~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~ell 69 (355)
|+||+|+|+ |++|.. .+..|...+- ..+|+. .|+++. +++..+-.... ....+. . .+++.+.+
T Consensus 2 ~~kV~I~GAaG~VG~~-la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~-~--~~~~~~~l 76 (325)
T cd01336 2 PIRVLVTGAAGQIAYS-LLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGVVMELQDCAFPLLKSVV-A--TTDPEEAF 76 (325)
T ss_pred CeEEEEECCCCHHHHH-HHHHHHhCcccCCCCCcEEEE-EEcCCccccccceeeehhhccccccCCce-e--cCCHHHHh
Confidence 789999999 999975 6666664331 136644 487542 23221110000 001111 1 25665666
Q ss_pred cCCCccEEEEecC
Q 018445 70 KEDSILGVAVVLA 82 (355)
Q Consensus 70 ~~~~~D~V~I~tp 82 (355)
++ .|+|+++.-
T Consensus 77 ~~--aDiVI~tAG 87 (325)
T cd01336 77 KD--VDVAILVGA 87 (325)
T ss_pred CC--CCEEEEeCC
Confidence 65 899998843
No 467
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=82.91 E-value=2.4 Score=38.33 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred CCceEEEEecccccchhccchhhhcC-------CeEEEEEEEeCCH-HHHHHHHHH------HhhhcCCccc---cccCc
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEIS-------DLVSLKFIWSRSE-ESAKSAAEV------ARKHFADVEC---VWGDN 63 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~~-------~~~~vvai~d~~~-~~~~~~~~~------~~~~~~~~~~---~~~~~ 63 (355)
+++||+|||.|+||.. ..+.+..+- ..++. .+++-.- .+.+.+.+. +-+|.|++.. ..-.+
T Consensus 20 ~~~kV~ivGsGnWGsa-iaki~~~n~~~~~~f~~~Vrm-wv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSA-IAKIVGENVKEFPIFDPQVRM-WVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred CceEEEEEccChHHHH-HHHHHhhhhhhccccCceeeE-EEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 4789999999999975 555554321 11222 2222211 112233221 1234555421 01127
Q ss_pred chhhhhcCCCccEEEEecCCcccHHHHHHHHHc---CC-eEEEecCCC
Q 018445 64 GLEQIIKEDSILGVAVVLAGQAQVDTSLKLLKA---GK-HVIQEKPAA 107 (355)
Q Consensus 64 ~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~---Gk-hVl~EKP~a 107 (355)
|+.+...| .|+++-..|+..-..+..+.... +. .|-|=|=+.
T Consensus 98 dl~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 98 DLVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred hHHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 89999887 79999999999888887775433 21 255555443
No 468
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=82.81 E-value=2 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=27.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHH
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAA 46 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~ 46 (355)
.||||||.|.||.. -...+.. .+ ++| -++|++++.+++..
T Consensus 4 ~kv~ViGaG~MG~g-IA~~~A~-~G-~~V-~l~D~~~~~~~~~~ 43 (307)
T COG1250 4 KKVAVIGAGVMGAG-IAAVFAL-AG-YDV-VLKDISPEALERAL 43 (307)
T ss_pred cEEEEEcccchhHH-HHHHHhh-cC-Cce-EEEeCCHHHHHHHH
Confidence 39999999999975 3444343 43 666 56799977765543
No 469
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=82.76 E-value=3.9 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCceEEEEecccccchhccchhhhc
Q 018445 1 MAPRIAILGAGIFVKTQYIPRLAEI 25 (355)
Q Consensus 1 m~~rigiiG~G~~~~~~~~~~l~~~ 25 (355)
++.||.|||+|..|.. .+..|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~-v~~~Lar~ 33 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQ-VIAGLARL 33 (244)
T ss_pred CCCeEEEEcCChHHHH-HHHHHHHc
Confidence 3679999999999985 88888865
No 470
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=82.18 E-value=19 Score=33.58 Aligned_cols=87 Identities=10% Similarity=0.133 Sum_probs=47.6
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcC-CCccEEEEecC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKE-DSILGVAVVLA 82 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~tp 82 (355)
+|.|.|+|.+|.. .+...+..+ .+++++.+.++.+.+.+ + +. ++...+.+.+.+.+.+. ..+|+|+-++.
T Consensus 181 ~VlV~G~G~vG~~-avq~Ak~~G--a~Vi~~~~~~~~~~~~a-~---~l--Ga~~~i~~~~~~~v~~~~~~~D~vid~~G 251 (375)
T PLN02178 181 RLGVNGLGGLGHI-AVKIGKAFG--LRVTVISRSSEKEREAI-D---RL--GADSFLVTTDSQKMKEAVGTMDFIIDTVS 251 (375)
T ss_pred EEEEEcccHHHHH-HHHHHHHcC--CeEEEEeCChHHhHHHH-H---hC--CCcEEEcCcCHHHHHHhhCCCcEEEECCC
Confidence 6889999999974 455444443 67776654444333333 2 23 33222111222222221 25899999887
Q ss_pred CcccHHHHHHHHHcCCe
Q 018445 83 GQAQVDTSLKLLKAGKH 99 (355)
Q Consensus 83 ~~~H~~~~~~al~~Gkh 99 (355)
...-...+.++++.|=.
T Consensus 252 ~~~~~~~~~~~l~~~G~ 268 (375)
T PLN02178 252 AEHALLPLFSLLKVSGK 268 (375)
T ss_pred cHHHHHHHHHhhcCCCE
Confidence 66555666677766533
No 471
>PRK04457 spermidine synthase; Provisional
Probab=82.08 E-value=35 Score=30.08 Aligned_cols=72 Identities=13% Similarity=-0.036 Sum_probs=43.0
Q ss_pred ceEEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHHHHHHHHHHhhh--cCCccccccCcchhhhhcC--CCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEESAKSAAEVARKH--FADVECVWGDNGLEQIIKE--DSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ell~~--~~~D~V 77 (355)
-+|..||+|. |. ....+. ..++ .+++ ++|.+++-.+.+.+.+... .+.+... ..|..+.+.+ ...|+|
T Consensus 68 ~~vL~IG~G~-G~--l~~~l~~~~p~-~~v~-~VEidp~vi~~A~~~f~~~~~~~rv~v~--~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 68 QHILQIGLGG-GS--LAKFIYTYLPD-TRQT-AVEINPQVIAVARNHFELPENGERFEVI--EADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CEEEEECCCH-hH--HHHHHHHhCCC-CeEE-EEECCHHHHHHHHHHcCCCCCCCceEEE--ECCHHHHHHhCCCCCCEE
Confidence 3799999996 42 333343 3344 5664 4599999988777643211 1233222 2566666653 368999
Q ss_pred EEec
Q 018445 78 AVVL 81 (355)
Q Consensus 78 ~I~t 81 (355)
++-.
T Consensus 141 ~~D~ 144 (262)
T PRK04457 141 LVDG 144 (262)
T ss_pred EEeC
Confidence 8743
No 472
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=82.02 E-value=9.2 Score=28.68 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=40.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccccccCcchhhhhc--CCCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECVWGDNGLEQIIK--EDSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell~--~~~~D~V~I~ 80 (355)
+|.-||||. |.. ....+.+.++ .+++++ |.++...+.+.+..+.. .+.+... ..++.+.+. ...+|+|++.
T Consensus 22 ~vldlG~G~-G~~-~~~l~~~~~~-~~v~~v-D~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 22 VLWDIGAGS-GSI-TIEAARLVPN-GRVYAI-ERNPEALRLIERNARRFGVSNIVIV--EGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred EEEEeCCCC-CHH-HHHHHHHCCC-ceEEEE-cCCHHHHHHHHHHHHHhCCCceEEE--eccccccChhhcCCCCEEEEC
Confidence 788899996 542 3333344454 566555 99988887776544333 1222211 133333221 2469999885
Q ss_pred c
Q 018445 81 L 81 (355)
Q Consensus 81 t 81 (355)
.
T Consensus 96 ~ 96 (124)
T TIGR02469 96 G 96 (124)
T ss_pred C
Confidence 4
No 473
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=81.83 E-value=11 Score=28.59 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=48.5
Q ss_pred cchhhhhcCCCccEEEEecCCcc----cHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEe
Q 018445 63 NGLEQIIKEDSILGVAVVLAGQA----QVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAE 137 (355)
Q Consensus 63 ~~~~ell~~~~~D~V~I~tp~~~----H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~ 137 (355)
.+++++|+. ++|+|+|.|-... +.++.....+.|+-|.+. .|.+-|+....++.+ |+.+.-++
T Consensus 49 ~~l~~ll~~-~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m----~T~aAcrTYN~L~~E-------gRrV~Aa~ 115 (117)
T cd05126 49 EELEELLEE-GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVL----PTEEAVKRYNELAGK-------GRRVLAVI 115 (117)
T ss_pred HHHHHHHhc-CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEc----ChHHHHHHHHHHHhC-------CCeEEEEE
Confidence 688999984 6999999998873 556667777788888876 688888888888887 66555443
No 474
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=81.77 E-value=5.8 Score=35.76 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=40.8
Q ss_pred EEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc--CCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 7 ILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF--ADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 7 iiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
|||+|++|.. .+..|...+- +.=+.++|++.++++..+.-..... ..........+|+++-+ .|+|+|+.-.
T Consensus 1 iIGaG~VG~~-~a~~l~~~~l-~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSS-TAFALLNQGI-ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHH-HHHHHHhcCC-CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCC
Confidence 6999999975 5555554432 4445788998887766554222211 01111111245665543 7999997543
No 475
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=81.41 E-value=4.9 Score=35.28 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=60.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHH-hhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVA-RKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
|||-|+|.-.-|+. ....|.+.+ .+|++. -+++...+.+.+.. .....+. ....++.+++.+.++|+|+-+|
T Consensus 1 m~ILvlGGT~egr~-la~~L~~~g--~~v~~s-~~t~~~~~~~~~~g~~~v~~g~---l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 1 MTVLLMGGTVDSRA-IAKGLIAQG--IEILVT-VTTSEGKHLYPIHQALTVHTGA---LDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred CeEEEEechHHHHH-HHHHHHhCC--CeEEEE-EccCCccccccccCCceEEECC---CCHHHHHHHHHhcCCCEEEEcC
Confidence 58999998334875 677777654 566553 33333433333210 0000011 1114577788888999999999
Q ss_pred CCc---ccHHHHHHHHHcCCe-EEEecCC
Q 018445 82 AGQ---AQVDTSLKLLKAGKH-VIQEKPA 106 (355)
Q Consensus 82 p~~---~H~~~~~~al~~Gkh-Vl~EKP~ 106 (355)
.|. .+...+.+|-+.|++ +=.|.|.
T Consensus 74 HPfA~~is~~a~~a~~~~~ipylR~eR~~ 102 (256)
T TIGR00715 74 HPFAAQITTNATAVCKELGIPYVRFERPP 102 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 986 467777888888954 6778774
No 476
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=81.28 E-value=8.3 Score=36.72 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=63.0
Q ss_pred CceEEEEecccccchhccchhhhcC---CeEEEEEEEeC-----CHHHHHHHHHHHhhh--cCC-ccc------------
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEIS---DLVSLKFIWSR-----SEESAKSAAEVARKH--FAD-VEC------------ 58 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~---~~~~vvai~d~-----~~~~~~~~~~~~~~~--~~~-~~~------------ 58 (355)
+-||||-|.|+||+. .++.+...+ ++++|+||.++ +++....+.+.=.-+ +++ +..
T Consensus 127 ~~~V~InGFGRIGR~-v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRL-LARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHH-HHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCE
Confidence 459999999999985 677665432 34999999653 333332222200000 111 100
Q ss_pred ---cccCcchhhhh-cCCCcc--EEEEecCCcccHHHHHHHHH-cC-CeEEEecCCC
Q 018445 59 ---VWGDNGLEQII-KEDSIL--GVAVVLAGQAQVDTSLKLLK-AG-KHVIQEKPAA 107 (355)
Q Consensus 59 ---~~~~~~~~ell-~~~~~D--~V~I~tp~~~H~~~~~~al~-~G-khVl~EKP~a 107 (355)
.+...+++++- .+-++| +|+=||.-....+-+..=|+ +| |-|++-=|..
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k 262 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGK 262 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCC
Confidence 00013444442 234688 88889988888777777777 67 8899988854
No 477
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=81.18 E-value=1.9 Score=41.73 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=46.7
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeC--CHHHHHHHHHHHhhhcCCccccccCcchhhh---hcCCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSR--SEESAKSAAEVARKHFADVECVWGDNGLEQI---IKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el---l~~~~~D~V 77 (355)
|||.|||.|..... ....|++.+...+++++ .. ++...........+++ .+ . .+|.+++ ..+.++|+|
T Consensus 1 mkVLviG~Ggreha-l~~~l~~s~~g~~v~~~-~g~~Npg~~~~~~~~~~~~~-~~--~--~~d~~~l~~~a~~~~id~V 73 (486)
T PRK05784 1 MKVLLVGDGAREHA-LAEALEKSTKGYKVYAL-SSYLNPGINSVVKATGGEYF-IG--N--INSPEEVKKVAKEVNPDLV 73 (486)
T ss_pred CEEEEECCchhHHH-HHHHHHhCCCCCEEEEE-ECCCChhheeecccccCceE-ec--C--CCCHHHHHHHHHHhCCCEE
Confidence 69999999976542 45567776544677665 33 3322111000000110 11 1 1455664 445779998
Q ss_pred EEecCCcccHHHHHHHHHcCCeEE
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVI 101 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl 101 (355)
++..-...-..++..+-+.|.+++
T Consensus 74 i~g~E~~l~~glad~l~~~Gi~v~ 97 (486)
T PRK05784 74 VIGPEEPLFAGVADVLREEGFPVF 97 (486)
T ss_pred EECCchHHHHHHHHHHHhCCCCEE
Confidence 875433333344444445565543
No 478
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=81.10 E-value=6.2 Score=34.57 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=65.2
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhc---C--CccccccCcchhhhhcCCCccEE
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHF---A--DVECVWGDNGLEQIIKEDSILGV 77 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~ell~~~~~D~V 77 (355)
-||.|||+|..|.. -++.|...+- .=+.++|.+.-....+.+ +++ . +.++. ....+.+..-++++.
T Consensus 31 s~vlvvG~GglG~~-~~~~la~aGv--g~l~i~D~d~v~~snL~r---q~~~~~~dig~~Ka---~~a~~~l~~ln~~v~ 101 (254)
T COG0476 31 SRVLVVGAGGLGSP-AAKYLALAGV--GKLTIVDFDTVELSNLQR---QFLFTEADVGKPKA---EVAAKALRKLNPLVE 101 (254)
T ss_pred CCEEEEecChhHHH-HHHHHHHcCC--CeEEEEcCCcccccccCc---eeeecccccCCcHH---HHHHHHHHHhCCCCe
Confidence 38999999999976 6777776553 224688887655544332 111 0 11111 233344454455555
Q ss_pred EEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecccC
Q 018445 78 AVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENYRF 141 (355)
Q Consensus 78 ~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~r~ 141 (355)
+.+.......+.+...++. ..+.+.. +.+.+.-..+.+.+.+ .++.+..+-..+|
T Consensus 102 v~~~~~~l~~~~~~~~~~~-~d~v~d~--~dn~~~r~~iN~~~~~------~~~pli~~~~~~~ 156 (254)
T COG0476 102 VVAYLERLDEENAEELIAQ-FDVVLDC--TDNFETRYLINDACVK------LGIPLVHGGAIGF 156 (254)
T ss_pred EEEeecccChhhHHHHhcc-CCEEEEC--CCCHHHHHHHHHHHHH------hCCCeEeeeeccc
Confidence 5555555555656444444 4444443 3444444444455555 3666766555444
No 479
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=81.10 E-value=3.5 Score=36.88 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=35.8
Q ss_pred ceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
|||.|+| .|.+|.. ....+... + .+++++ ++.. . ++... +.+.+++++.++|+|+.|.
T Consensus 1 MriLI~GasG~lG~~-l~~~l~~~-~-~~v~~~-~r~~------------~--dl~d~---~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSA-LARALKER-G-YEVIAT-SRSD------------L--DLTDP---EAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHH-HHHHHTTT-S-EEEEEE-STTC------------S---TTSH---HHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHH-HHHHHhhC-C-CEEEEe-Cchh------------c--CCCCH---HHHHHHHHHhCCCeEeccc
Confidence 7999999 5888874 66666653 3 788887 4441 1 22111 4567777777799999885
No 480
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.00 E-value=3.8 Score=41.72 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=27.8
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHH
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAA 46 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~ 46 (355)
||+|||+|.||.. ....+....+ ++| .++|++++..+...
T Consensus 306 ~v~ViGaG~mG~~-iA~~~a~~~G-~~V-~l~d~~~~~l~~~~ 345 (699)
T TIGR02440 306 KVGILGGGLMGGG-IASVTATKAG-IPV-RIKDINPQGINNAL 345 (699)
T ss_pred EEEEECCcHHHHH-HHHHHHHHcC-CeE-EEEeCCHHHHHHHH
Confidence 7999999999986 4444442233 566 56899998766643
No 481
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=80.96 E-value=2.7 Score=37.92 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=41.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
.+||+|+|+||.. ....++... ..+++.-+..+....+. + ++.. -+++|++.. .|.+.+.+|-
T Consensus 148 TLgvlG~GrIGse-VA~r~k~~g--m~vI~~dpi~~~~~~~a------~--gvq~----vsl~Eil~~--ADFitlH~PL 210 (406)
T KOG0068|consen 148 TLGVLGLGRIGSE-VAVRAKAMG--MHVIGYDPITPMALAEA------F--GVQL----VSLEEILPK--ADFITLHVPL 210 (406)
T ss_pred EEEEeecccchHH-HHHHHHhcC--ceEEeecCCCchHHHHh------c--ccee----eeHHHHHhh--cCEEEEccCC
Confidence 4799999999986 444444443 57777655555443221 2 4432 689999987 7888877664
No 482
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=80.95 E-value=7.1 Score=34.61 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=33.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHh-hhcCCccccccCcchhhhhcC-CCccEEEEe
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVAR-KHFADVECVWGDNGLEQIIKE-DSILGVAVV 80 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ell~~-~~~D~V~I~ 80 (355)
=||++||+|..--. -+--...+..+..+.. +|++++..+...+... ....+....+.+.|..+.-.+ .+.|+|+++
T Consensus 122 ~rVaFIGSGPLPlT-~i~la~~~~~~~~v~~-iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLT-SIVLAKQHGPGARVHN-IDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HH-HHHHH--HTT--EEEE-EESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ceEEEEcCCCcchH-HHHHHHHhCCCCeEEE-EeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 38999999986543 2222223322245544 4999998877765443 111111112222344444322 458899987
Q ss_pred cCCc
Q 018445 81 LAGQ 84 (355)
Q Consensus 81 tp~~ 84 (355)
.--.
T Consensus 200 alVg 203 (276)
T PF03059_consen 200 ALVG 203 (276)
T ss_dssp TT-S
T ss_pred hhcc
Confidence 6543
No 483
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=80.79 E-value=9.3 Score=32.72 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=32.3
Q ss_pred ceEEEEecccccchhccchhhh----cCCeEEEEEEEeC---CHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCcc
Q 018445 3 PRIAILGAGIFVKTQYIPRLAE----ISDLVSLKFIWSR---SEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSIL 75 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~----~~~~~~vvai~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D 75 (355)
+|||||=||++|....+..+.. ..+ +++.-+-+- +++..++. ..+++++-++|
T Consensus 2 vKiGiiKlGNig~s~~idl~LDErAdRed-I~vrv~gsGaKm~pe~~e~~-------------------~~~~~~~~~pd 61 (276)
T PF01993_consen 2 VKIGIIKLGNIGTSVVIDLLLDERADRED-IDVRVVGSGAKMGPEDVEEV-------------------VTKMLKEWDPD 61 (276)
T ss_dssp EEEEEEEES--HHHHHTTGGGSTTS--SS-EEEEEEEEET--SHHHHHHH-------------------HHHHHHHH--S
T ss_pred eEEEEEEecccchHHHHHHHHHhhhccCC-ceEEEeccCCCCCHHHHHHH-------------------HHHHHHhhCCC
Confidence 5999999999998766655542 222 444332222 22222221 23344444689
Q ss_pred EEEEecCCcccH
Q 018445 76 GVAVVLAGQAQV 87 (355)
Q Consensus 76 ~V~I~tp~~~H~ 87 (355)
.|++.+||..-.
T Consensus 62 f~I~isPN~~~P 73 (276)
T PF01993_consen 62 FVIVISPNAAAP 73 (276)
T ss_dssp EEEEE-S-TTSH
T ss_pred EEEEECCCCCCC
Confidence 999999986543
No 484
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=80.77 E-value=5.2 Score=38.34 Aligned_cols=90 Identities=11% Similarity=-0.069 Sum_probs=50.5
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCC
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAG 83 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~ 83 (355)
+|=+||.|++|.......|.+.+ ..|+ ++|..+... .. +..++. ++....+ .+.+.++. +.|.|+++.--
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G--~~V~-~~D~~~~~~-~~-~~l~~~--gi~~~~~-~~~~~~~~--~~d~vV~SpgI 70 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLG--HEVT-GSDANVYPP-MS-TQLEAQ--GIEIIEG-FDAAQLEP--KPDLVVIGNAM 70 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCC--CEEE-EECCCCCcH-HH-HHHHHC--CCEEeCC-CCHHHCCC--CCCEEEECCCC
Confidence 35678999988765555555554 6764 578754221 11 111122 4433221 33344443 37877665433
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018445 84 QAQVDTSLKLLKAGKHVIQE 103 (355)
Q Consensus 84 ~~H~~~~~~al~~GkhVl~E 103 (355)
....+...+|.+.|++|+-|
T Consensus 71 ~~~~~~~~~a~~~~i~v~~~ 90 (448)
T TIGR01081 71 KRGNPCVEAVLNLNLPYTSG 90 (448)
T ss_pred CCCCHHHHHHHHCCCCEEeH
Confidence 34455677778999999877
No 485
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=80.49 E-value=3.6 Score=33.94 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=25.7
Q ss_pred ceEEEEecc-cccchhccchhhhcCCeEEEEEEEeCCHHHHHHH
Q 018445 3 PRIAILGAG-IFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSA 45 (355)
Q Consensus 3 ~rigiiG~G-~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~ 45 (355)
|||+|||+. ..|.. .+......+ -+|+||+ |++.+..+.
T Consensus 1 mKIaiIgAsG~~Gs~-i~~EA~~RG--HeVTAiv-Rn~~K~~~~ 40 (211)
T COG2910 1 MKIAIIGASGKAGSR-ILKEALKRG--HEVTAIV-RNASKLAAR 40 (211)
T ss_pred CeEEEEecCchhHHH-HHHHHHhCC--CeeEEEE-eChHhcccc
Confidence 799999964 45554 555554444 4899985 577776553
No 486
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=80.47 E-value=21 Score=29.77 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=38.6
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecC
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLA 82 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp 82 (355)
.+|.-||||. |. ....+.+. + .+|+|+ |.+++..+.+.+..... ++...+...++.+.--...+|+|+....
T Consensus 32 ~~vLDiGcG~-G~--~a~~la~~-g-~~V~~i-D~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~fD~I~~~~~ 103 (195)
T TIGR00477 32 CKTLDLGCGQ-GR--NSLYLSLA-G-YDVRAW-DHNPASIASVLDMKARE--NLPLRTDAYDINAAALNEDYDFIFSTVV 103 (195)
T ss_pred CcEEEeCCCC-CH--HHHHHHHC-C-CeEEEE-ECCHHHHHHHHHHHHHh--CCCceeEeccchhccccCCCCEEEEecc
Confidence 4788999995 43 23333433 3 577776 99998877766544333 2221110123322211345888875543
No 487
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=80.16 E-value=3.1 Score=37.66 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=43.9
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHH-----------HHHHHHHHHhhhcCCcccccc----Ccchhh
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEE-----------SAKSAAEVARKHFADVECVWG----DNGLEQ 67 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~----~~~~~e 67 (355)
|||.++|++.++.. .+..|.+. + .++++|+...+. ..+.+++ +. +++.... .....+
T Consensus 1 mkIvf~G~~~~a~~-~L~~L~~~-~-~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~---~~--~Ip~~~~~~~~~~~~~~ 72 (309)
T PRK00005 1 MRIVFMGTPEFAVP-SLKALLES-G-HEVVAVVTQPDRPAGRGKKLTPSPVKQLAL---EH--GIPVLQPEKLRDPEFLA 72 (309)
T ss_pred CEEEEECCCHHHHH-HHHHHHHC-C-CcEEEEECCCCCCCCCCCCCCCCHHHHHHH---Hc--CCCEECcCCCCCHHHHH
Confidence 69999999999976 78888764 3 688888864221 2344443 33 4433210 012334
Q ss_pred hhcCCCccEEEEec
Q 018445 68 IIKEDSILGVAVVL 81 (355)
Q Consensus 68 ll~~~~~D~V~I~t 81 (355)
.+...++|+++++.
T Consensus 73 ~l~~~~~Dliv~~~ 86 (309)
T PRK00005 73 ELAALNADVIVVVA 86 (309)
T ss_pred HHHhcCcCEEEEeh
Confidence 55667889888764
No 488
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.05 E-value=7 Score=35.97 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=51.3
Q ss_pred eEEEEecccccchhccchhhhcCCeEEEEEEEe--CCHHHHHHHHHHHhhhcCCccc-cccCcchhhhhcCCCccEEEEe
Q 018445 4 RIAILGAGIFVKTQYIPRLAEISDLVSLKFIWS--RSEESAKSAAEVARKHFADVEC-VWGDNGLEQIIKEDSILGVAVV 80 (355)
Q Consensus 4 rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ell~~~~~D~V~I~ 80 (355)
+|.|+|+|.+|.- .+..++..+ ++++++.. .++++.+.+.+ . ++.. .+...+.++......+|+|+-+
T Consensus 175 ~vlI~G~G~vG~~-a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~--Ga~~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 175 RALVLGAGPIGLL-AALLLRLRG--FEVYVLNRRDPPDPKADIVEE----L--GATYVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred EEEEECCCHHHHH-HHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----c--CCEEecCCccchhhhhhcCCCCEEEEC
Confidence 7899999999974 565555543 57766543 25666665433 3 2211 1111222221122458999998
Q ss_pred cCCcccHHHHHHHHHcC-CeEEEe
Q 018445 81 LAGQAQVDTSLKLLKAG-KHVIQE 103 (355)
Q Consensus 81 tp~~~H~~~~~~al~~G-khVl~E 103 (355)
+.......-+..+++.| +=|++-
T Consensus 246 ~g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 246 TGVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred cCCHHHHHHHHHHccCCcEEEEEe
Confidence 88665666666666665 434443
No 489
>PRK10637 cysG siroheme synthase; Provisional
Probab=79.89 E-value=6.6 Score=37.76 Aligned_cols=129 Identities=9% Similarity=-0.035 Sum_probs=67.1
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcch-hhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGL-EQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ell~~~~~D~V~I~t 81 (355)
-||.|||.|..+.+ =+..|.+.+. +|+-|...-.+..+.+.+ .. .+. +....| ++.++ +.++|+++|
T Consensus 13 ~~vlvvGgG~vA~r-k~~~ll~~ga--~v~visp~~~~~~~~l~~---~~--~i~--~~~~~~~~~dl~--~~~lv~~at 80 (457)
T PRK10637 13 RDCLLVGGGDVAER-KARLLLDAGA--RLTVNALAFIPQFTAWAD---AG--MLT--LVEGPFDESLLD--TCWLAIAAT 80 (457)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCCC--EEEEEcCCCCHHHHHHHh---CC--CEE--EEeCCCChHHhC--CCEEEEECC
Confidence 38999999999976 4666666553 443333222223333332 11 111 101122 23344 378999999
Q ss_pred CC-cccHHHHHHHHHcCCeEE-EecCCCCCHHHHHHHH-HHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHH
Q 018445 82 AG-QAQVDTSLKLLKAGKHVI-QEKPAAANISEIENAL-SRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAE 154 (355)
Q Consensus 82 p~-~~H~~~~~~al~~GkhVl-~EKP~a~~~~e~~~l~-~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 154 (355)
.+ .....+...|-++|+.|- +.+|- .+.=+. ...++ .++.+.|..+-.---..+.+|+.|++
T Consensus 81 ~d~~~n~~i~~~a~~~~~lvN~~d~~~-----~~~f~~pa~~~~------g~l~iaisT~G~sP~~a~~lr~~ie~ 145 (457)
T PRK10637 81 DDDAVNQRVSEAAEARRIFCNVVDAPK-----AASFIMPSIIDR------SPLMVAVSSGGTSPVLARLLREKLES 145 (457)
T ss_pred CCHHHhHHHHHHHHHcCcEEEECCCcc-----cCeEEEeeEEec------CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 88 567777777778887654 33331 111111 22222 35555555554444444555555554
No 490
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=79.67 E-value=11 Score=33.17 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=38.5
Q ss_pred hhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhhhcCCCccEEEEecCCcccHHHHHHHHH
Q 018445 21 RLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQIIKEDSILGVAVVLAGQAQVDTSLKLLK 95 (355)
Q Consensus 21 ~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~~H~~~~~~al~ 95 (355)
+|++.+..++|+ .+|++++.++.+.+ . ++.... .++ .+.+.+ .|+|++|+|...-.+++.+...
T Consensus 4 aL~~~g~~~~v~-g~d~~~~~~~~a~~----~--g~~~~~-~~~-~~~~~~--~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 4 ALRKAGPDVEVY-GYDRDPETLEAALE----L--GIIDEA-STD-IEAVED--ADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHTTTTSEEE-EE-SSHHHHHHHHH----T--TSSSEE-ESH-HHHGGC--CSEEEE-S-HHHHHHHHHHHHC
T ss_pred HHHhCCCCeEEE-EEeCCHHHHHHHHH----C--CCeeec-cCC-HhHhcC--CCEEEEcCCHHHHHHHHHHhhh
Confidence 455544336775 55999998877654 2 332221 134 456665 7999999999887777776544
No 491
>PLN00016 RNA-binding protein; Provisional
Probab=79.56 E-value=7 Score=36.43 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=25.6
Q ss_pred CCceEEEE----e-cccccchhccchhhhcCCeEEEEEEEeCCHH
Q 018445 1 MAPRIAIL----G-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEE 40 (355)
Q Consensus 1 m~~rigii----G-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~ 40 (355)
|..||.|+ | +|.+|.. .++.|.+.+ .+|+++. +++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~-lv~~L~~~G--~~V~~l~-R~~~ 91 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFY-LAKELVKAG--HEVTLFT-RGKE 91 (378)
T ss_pred ccceEEEEeccCCCceeEhHH-HHHHHHHCC--CEEEEEe-cCCc
Confidence 45789999 5 6999985 778787654 5777664 4433
No 492
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=79.37 E-value=2.5 Score=37.56 Aligned_cols=71 Identities=21% Similarity=0.241 Sum_probs=39.3
Q ss_pred eEEEEec-ccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCcccccc-CcchhhhhcC----CC-ccE
Q 018445 4 RIAILGA-GIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWG-DNGLEQIIKE----DS-ILG 76 (355)
Q Consensus 4 rigiiG~-G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ell~~----~~-~D~ 76 (355)
+|.|+|+ |.+|.. .++.|.+.+ .+|.++ .|++++.+.. ....+...+. .+++.+.++. .. +|.
T Consensus 1 ~ilVtGatG~iG~~-vv~~L~~~g--~~V~~~-~R~~~~~~~~------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASR-IARLLQAAS--VPFLVA-SRSSSSSAGP------NEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHH-HHHHHHhCC--CcEEEE-eCCCccccCC------CCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 5889996 889975 677777654 566554 5666544211 0001111220 0234444531 34 899
Q ss_pred EEEecCCc
Q 018445 77 VAVVLAGQ 84 (355)
Q Consensus 77 V~I~tp~~ 84 (355)
|+.++|+.
T Consensus 71 v~~~~~~~ 78 (285)
T TIGR03649 71 VYLVAPPI 78 (285)
T ss_pred EEEeCCCC
Confidence 99887753
No 493
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=79.09 E-value=5.2 Score=33.06 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=32.6
Q ss_pred hhhhhcCCCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCC
Q 018445 65 LEQIIKEDSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAAN 109 (355)
Q Consensus 65 ~~ell~~~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~ 109 (355)
+.+.|...+++.=+|...-+--.+++.+|+++|-.=|+|||+...
T Consensus 66 lq~~L~~~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q 110 (202)
T COG4566 66 LQDRLAERGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQ 110 (202)
T ss_pred HHHHHHhcCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchH
Confidence 344444445555555556666788999999999999999998543
No 494
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=78.97 E-value=2.7 Score=39.95 Aligned_cols=144 Identities=8% Similarity=-0.034 Sum_probs=72.0
Q ss_pred CceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhh---hcCCCccEEE
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQI---IKEDSILGVA 78 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el---l~~~~~D~V~ 78 (355)
.|||.|||.|..-. ..+..|.+.+. +..+.++-.|...+... . .. ..... ..|.+++ ..+.++|+|+
T Consensus 4 ~~kvLviG~g~reh-al~~~~~~~~~-~~~~~~~pgn~g~~~~~-~---~~--~~~~~--~~d~~~l~~~a~~~~iD~Vv 73 (426)
T PRK13789 4 KLKVLLIGSGGRES-AIAFALRKSNL-LSELKVFPGNGGFPDDE-L---LP--ADSFS--ILDKSSVQSFLKSNPFDLIV 73 (426)
T ss_pred CcEEEEECCCHHHH-HHHHHHHhCCC-CCEEEEECCchHHhccc-c---cc--ccCcC--cCCHHHHHHHHHHcCCCEEE
Confidence 37999999996543 24455556554 44445544454322211 0 00 11111 1566655 4467799999
Q ss_pred EecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHH-HHHHhhccCCCCCCCCeEEEEecccCchHHHHHHHHHHHhCC
Q 018445 79 VVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIEN-ALSRYNSICPDPPGQPIWAVAENYRFEPAFVECKKLIAEIGD 157 (355)
Q Consensus 79 I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~-l~~~a~~~~~~~~~~~~~~v~~~~r~~p~~~~~k~~i~~iG~ 157 (355)
+..-...-..++..+-+.|.+++-=.+.+...+.-+. +.++.++ .|+... .++.......+++.++++|-
T Consensus 74 ~g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~------~gIpt~---~~~~~~~~~ea~~~~~~~~~ 144 (426)
T PRK13789 74 VGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKE------AKIPTA---SYKTFTEYSSSLSYLESEML 144 (426)
T ss_pred ECCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHH------cCCCCC---CeEeeCCHHHHHHHHHhcCC
Confidence 7544444445666667788765511111111111111 2234445 365542 22333445566666766776
Q ss_pred eeEEEEE
Q 018445 158 MMSVQVI 164 (355)
Q Consensus 158 i~~v~~~ 164 (355)
+.-+...
T Consensus 145 PvVVKp~ 151 (426)
T PRK13789 145 PIVIKAD 151 (426)
T ss_pred CEEEEeC
Confidence 6666643
No 495
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=78.73 E-value=5.4 Score=34.30 Aligned_cols=75 Identities=8% Similarity=0.120 Sum_probs=48.5
Q ss_pred EEEEecccccchhccchhh-hcCCeEEEEEEEeCCHHHHHHHHHHHhhhcC-CccccccCcchhhhhc----CCCccEEE
Q 018445 5 IAILGAGIFVKTQYIPRLA-EISDLVSLKFIWSRSEESAKSAAEVARKHFA-DVECVWGDNGLEQIIK----EDSILGVA 78 (355)
Q Consensus 5 igiiG~G~~~~~~~~~~l~-~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ell~----~~~~D~V~ 78 (355)
+.=|||| +|. |+-.++ ++|+ ...+|| ++.......+.+++.+..- ++.... .|..++++ +.++|-|+
T Consensus 52 ~lEIGfG-~G~--~l~~~A~~nP~-~nfiGi-Ei~~~~v~~~l~k~~~~~l~Nlri~~--~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 52 VLEIGFG-MGE--FLVEMAKKNPE-KNFLGI-EIRVPGVAKALKKIKELGLKNLRLLC--GDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred EEEECCC-CCH--HHHHHHHHCCC-CCEEEE-EEehHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHhcCCCCCeeEEE
Confidence 3448999 564 555555 6666 788887 5655555555555545533 554432 56666665 33799999
Q ss_pred EecCCccc
Q 018445 79 VVLAGQAQ 86 (355)
Q Consensus 79 I~tp~~~H 86 (355)
|.=|+..|
T Consensus 125 i~FPDPWp 132 (227)
T COG0220 125 INFPDPWP 132 (227)
T ss_pred EECCCCCC
Confidence 99998866
No 496
>PLN02285 methionyl-tRNA formyltransferase
Probab=78.25 E-value=3.9 Score=37.50 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=27.8
Q ss_pred CceEEEEecccccchhccchhhhc----CCeEEEEEEEeCCHH
Q 018445 2 APRIAILGAGIFVKTQYIPRLAEI----SDLVSLKFIWSRSEE 40 (355)
Q Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~----~~~~~vvai~d~~~~ 40 (355)
+|||.++|++.++.. .+.+|.+. ...++|++|+...+.
T Consensus 6 ~~kI~f~Gt~~fa~~-~L~~L~~~~~~~~~~~~iv~Vvt~~~~ 47 (334)
T PLN02285 6 KKRLVFLGTPEVAAT-VLDALLDASQAPDSAFEVAAVVTQPPA 47 (334)
T ss_pred ccEEEEEECCHHHHH-HHHHHHhhhhccCCCCeEEEEEeCCCC
Confidence 589999999999875 77777643 113799997765443
No 497
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=78.23 E-value=29 Score=28.99 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=41.3
Q ss_pred ceEEEEecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhh-cCCccccccCcchhhhhcCCCccEEEEec
Q 018445 3 PRIAILGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKH-FADVECVWGDNGLEQIIKEDSILGVAVVL 81 (355)
Q Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ell~~~~~D~V~I~t 81 (355)
-+|.-+|||. |. +...|.+. + .+|+|+ |.+++..+.+.+..... ..++.... .|+.++--....|+|+...
T Consensus 32 ~~vLDiGcG~-G~--~a~~La~~-g-~~V~gv-D~S~~~i~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~fD~I~~~~ 103 (197)
T PRK11207 32 GKTLDLGCGN-GR--NSLYLAAN-G-FDVTAW-DKNPMSIANLERIKAAENLDNLHTAV--VDLNNLTFDGEYDFILSTV 103 (197)
T ss_pred CcEEEECCCC-CH--HHHHHHHC-C-CEEEEE-eCCHHHHHHHHHHHHHcCCCcceEEe--cChhhCCcCCCcCEEEEec
Confidence 4788999996 53 34445443 2 678777 99998777665543222 11222111 4555542234689888654
Q ss_pred C
Q 018445 82 A 82 (355)
Q Consensus 82 p 82 (355)
.
T Consensus 104 ~ 104 (197)
T PRK11207 104 V 104 (197)
T ss_pred c
Confidence 4
No 498
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=78.05 E-value=36 Score=27.69 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=51.8
Q ss_pred CCccEEEEecCCcccHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEEecc--cCchHHHHHH
Q 018445 72 DSILGVAVVLAGQAQVDTSLKLLKAGKHVIQEKPAAANISEIENALSRYNSICPDPPGQPIWAVAENY--RFEPAFVECK 149 (355)
Q Consensus 72 ~~~D~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~~~~~~~v~~~~--r~~p~~~~~k 149 (355)
.+.|.|+|=||+............+..-+++=.|-..+..++.++++.+++. +..+.+-.|+ ........++
T Consensus 91 ~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~------~~~~~vV~N~~~~~~~~~~~~~ 164 (179)
T cd03110 91 EGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHF------GIPVGVVINKYDLNDEIAEEIE 164 (179)
T ss_pred cCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHc------CCCEEEEEeCCCCCcchHHHHH
Confidence 5699999999998776544433344456777778778888999999998885 4433333332 2223445666
Q ss_pred HHHHHhC
Q 018445 150 KLIAEIG 156 (355)
Q Consensus 150 ~~i~~iG 156 (355)
+.++++|
T Consensus 165 ~~~~~~~ 171 (179)
T cd03110 165 DYCEEEG 171 (179)
T ss_pred HHHHHcC
Confidence 6666544
No 499
>PLN02427 UDP-apiose/xylose synthase
Probab=77.97 E-value=7.4 Score=36.34 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=28.1
Q ss_pred CceEEEEe-cccccchhccchhhhcCCeEEEEEEEeCCHHHHHH
Q 018445 2 APRIAILG-AGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKS 44 (355)
Q Consensus 2 ~~rigiiG-~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~ 44 (355)
+|||.|.| +|.+|.. .++.|.+.++ .+|+++ |++.++.+.
T Consensus 14 ~~~VlVTGgtGfIGs~-lv~~L~~~~g-~~V~~l-~r~~~~~~~ 54 (386)
T PLN02427 14 PLTICMIGAGGFIGSH-LCEKLMTETP-HKVLAL-DVYNDKIKH 54 (386)
T ss_pred CcEEEEECCcchHHHH-HHHHHHhcCC-CEEEEE-ecCchhhhh
Confidence 47999999 5999974 7777776543 577776 666555443
No 500
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=77.91 E-value=4.7 Score=28.48 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=36.2
Q ss_pred EecccccchhccchhhhcCCeEEEEEEEeCCHHHHHHHHHHHhhhcCCccccccCcchhhh-hcCCCccEEEEe
Q 018445 8 LGAGIFVKTQYIPRLAEISDLVSLKFIWSRSEESAKSAAEVARKHFADVECVWGDNGLEQI-IKEDSILGVAVV 80 (355)
Q Consensus 8 iG~G~~~~~~~~~~l~~~~~~~~vvai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-l~~~~~D~V~I~ 80 (355)
||||. |. ....+.+.++ .+++++ |.+++..+.+.+..... +.. +...+.+++ +.+..+|+|+..
T Consensus 3 iG~G~-G~--~~~~l~~~~~-~~v~~~-D~~~~~~~~~~~~~~~~--~~~--~~~~d~~~l~~~~~sfD~v~~~ 67 (95)
T PF08241_consen 3 IGCGT-GR--FAAALAKRGG-ASVTGI-DISEEMLEQARKRLKNE--GVS--FRQGDAEDLPFPDNSFDVVFSN 67 (95)
T ss_dssp ET-TT-SH--HHHHHHHTTT-CEEEEE-ES-HHHHHHHHHHTTTS--TEE--EEESBTTSSSS-TT-EEEEEEE
T ss_pred ecCcC-CH--HHHHHHhccC-CEEEEE-eCCHHHHHHHHhccccc--Cch--heeehHHhCccccccccccccc
Confidence 68883 43 4555665544 688666 99999888887744322 221 112456666 345778988654
Done!