BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018446
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSM|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
From Brucella Melitensis
pdb|3TSM|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
From Brucella Melitensis
Length = 272
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 114/185 (61%), Gaps = 2/185 (1%)
Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
G+ +IL +I +K E+ K R L LK + R F+ AL A + G AL
Sbjct: 3 GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKAL-EAKRAAGQFAL 61
Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
IAE+KKASPS+G++R DFDP +A++YE+GGAACLS+LTD F+G+ E L A R A
Sbjct: 62 IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120
Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
P L K+F+ D +Q+Y AR+ GAD +L+I A + D + + LG+ AL+EVHDE
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180
Query: 300 EMDRV 304
EM+R
Sbjct: 181 EMERA 185
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
+ +L +IV K + V KQ++PL+ +N + P R F AL A RT A I E
Sbjct: 2 QTVLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILEC 54
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
KKASPS+G++R+DFDP IA Y K A+ +S+LTDEKYF+GSF L V + P+L
Sbjct: 55 KKASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PIL 112
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
CK+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 107/178 (60%), Gaps = 9/178 (5%)
Query: 126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKK 185
+L +IV K + V KQ++PL+ +N + P R F AL A RT A I E KK
Sbjct: 4 VLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILECKK 56
Query: 186 ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK 245
ASPS+G++R+DFDP IA Y K A+ +S+LTDEKYF+GSF L V + P+LCK
Sbjct: 57 ASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PILCK 114
Query: 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 115 DFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172
>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form
pdb|3T40|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) Complex With
N-2-Carboxyphenyl Glycine (Cpg)
pdb|3T44|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Indole Glycerol Phosphate (Igp) Amd Anthranilate
pdb|3T55|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Phenoxymethyl Benzoic Acid (Pmba)
pdb|3T78|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
5-Fluoroanthranilate
Length = 272
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 113/182 (62%), Gaps = 6/182 (3%)
Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
+P +L+ I+ +V + LS +K A APP D +MAA + G+ +IA
Sbjct: 2 SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLD----VMAALREPGI-GVIA 56
Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
EVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR A V P
Sbjct: 57 EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-ASVSIP 115
Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
+L K+F+V +QI+ AR GAD +LLI A L + M + LG+TALVEVH E+E
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175
Query: 302 DR 303
DR
Sbjct: 176 DR 177
>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc)
Form Mycobacterium Tuberculosis
Length = 275
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 110/186 (59%), Gaps = 6/186 (3%)
Query: 118 NEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP 177
+ +P +L+ I+ +V + LS +K A APP D AL + G+
Sbjct: 1 SNAXSPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVXAAL----REPGI- 55
Query: 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG 237
+IAEVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR A
Sbjct: 56 GVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-AS 114
Query: 238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
V P+L K+F+V +QI+ AR GAD +LLI A L + + LG TALVEVH
Sbjct: 115 VSIPVLRKDFVVQPYQIHEARAHGADXLLLIVAALEQSVLVSXLDRTESLGXTALVEVHT 174
Query: 298 EREMDR 303
E+E DR
Sbjct: 175 EQEADR 180
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 88/130 (67%), Gaps = 4/130 (3%)
Query: 173 RTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA 232
R GL ++IAEVK+ SPS G++RE DPVE A +Y +GGA +S+LT+ F GS +L+
Sbjct: 43 RPGL-SVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKR 100
Query: 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292
VR A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL AL
Sbjct: 101 VREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEE-ARRLGLEAL 158
Query: 293 VEVHDEREMD 302
VEVH ERE++
Sbjct: 159 VEVHTERELE 168
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53|A Chain A, Complex Of Indole-3-Glycerolphosphate Synthase From
Sulfolobus Solfataricus With Indole-3-Glycerolphosphate
At 2.0 A Resolution
Length = 247
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 7 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSILT+EKYF GS+E L + S+ V P+L K+FIV
Sbjct: 59 -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D +
Sbjct: 116 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD-IALRIGAR 174
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 175 FIGINSRDLETLEINKENQRKLI 197
>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus At 2.0 A Resolution
pdb|1JUK|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Trigonal Crystal Form
pdb|1JUL|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Second Orthorhombic Crystal Form
Length = 248
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSILT+EKYF GS+E L + S+ V P+L K+FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIGINSRDLETLEINKENQRKLI 198
>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3-
Glycerol Phosphate Synthase From Sulfolobus Solfataricus
Length = 222
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Query: 167 LMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS 226
++ N+R + A+IAE K+ SPS L + DP+E ++ E+ A LSILT+EKYF GS
Sbjct: 11 ILEFNKR-NITAIIAEYKRKSPSG--LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGS 66
Query: 227 FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286
+E L + S+ V P+L K+FIV QI A GAD VLLI +L + ++ + + +
Sbjct: 67 YETLRKIASS-VSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARS 125
Query: 287 LGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
G+ L+E++DE ++D + T E++ N +KL+
Sbjct: 126 YGMEPLIEINDENDLD-IALRIGARFIGINSRDLETLEINKENQRKLI 172
>pdb|3UZ5|A Chain A, Designed Protein Ke59 R13 311H
pdb|3UZ5|B Chain B, Designed Protein Ke59 R13 311H
pdb|3UZJ|A Chain A, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
pdb|3UZJ|B Chain B, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
Length = 252
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV Q QRRP P ++ N+R + A++A K+ SPS
Sbjct: 8 WLEDV--VQRSQRRP----SVRASRQRPIISLKERILEFNKRN-ITAIMAVYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+G L+ILT+EKYF GS+E+L + S+ V P+L + IV
Sbjct: 60 -LDVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSVPILMWDIIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + LG+ + +HDE ++D +
Sbjct: 117 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSLGMEPAIVIHDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++N N +KL+
Sbjct: 176 FIIITSHDLETLEINNENQRKLI 198
>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-glycerol Phosphate Synthase
(tm0140) From Thermotoga Maritima At 3.0 A Resolution
Length = 242
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
+IAE KKASPS G + D + R Y++ A +SILT++ YFKG + A R+
Sbjct: 34 IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 92
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
+ P+L K+F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH
Sbjct: 93 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 151
Query: 299 REMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
++++V TFE+ + +LL
Sbjct: 152 EDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELL 187
>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
Length = 251
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
+IAE KKASPS G + D + R Y++ A +SILT++ YFKG + A R+
Sbjct: 43 IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 101
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
+ P+L K+F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH
Sbjct: 102 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 160
Query: 299 REMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLL 334
++++V TFE+ + +LL
Sbjct: 161 EDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELL 196
>pdb|4A29|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.0
Length = 258
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA ++ SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAVYERKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167
>pdb|4A2S|A Chain A, Structure Of The Engineered Retro-aldolase Ra95.5
Length = 258
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 11/171 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAYYSRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167
>pdb|3HOJ|A Chain A, Crystal Structure Of A Novel Engineered Retroaldolase:
Ra-22
Length = 248
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAGYDRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ L++++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIKINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIGIVSADWETLEINKENQRKLI 198
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 18/206 (8%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
W +DV QL RRP S+ +A R I ++ N+R A+IA K+ SP
Sbjct: 8 WLEDV--VQLSLRRP-SL------HASRQRPIISLRERILEFNKRNN-TAIIAVYKRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
S L + DP+E A+ E+G L+ILT+EKYF GS+E+L + S+ V P+L + I
Sbjct: 58 SG--LNVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDII 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXX 308
V QI A GAD V LI +L + +++ + + + G+ + ++DE ++D +
Sbjct: 114 VKESQIDDAYNLGADTVGLIVKILTERELKSLLEYARSYGMEPAIVINDENDLD-IALRI 172
Query: 309 XXXXXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 173 GARFIIISSHDLETLEINKENQRKLI 198
>pdb|4A2R|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.5-5
Length = 258
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
W +DV QL RRP +A R I ++ N ++ + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRPSV-------HASRQRPIISLNERILEFN-KSNITAIIAYYTRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
S L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FI
Sbjct: 58 SG--LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYEMLRKIASS-VSIPILMNDFI 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
V QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 114 VKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD 167
>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or63
Length = 258
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L ILT+EKYF GS+E L + S+ V P+ + IV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLKILTEEKYFNGSYETLRKIASS-VSIPIAMSDAIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V+LI +L + ++ + + + G+ L+ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVVLIVKILTERELESLLEYARSYGMEPLIVINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIGIESRDWETLEINKENQRKLI 198
>pdb|3UY8|A Chain A, Designed Protein Ke59 R5_115F
pdb|3UY8|B Chain B, Designed Protein Ke59 R5_115F
Length = 247
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP L+ + P ++ N+R A+IA K+ SPS
Sbjct: 7 WLEDV--VQLSLRRP--SLRAS--RQRPIISLKERILEFNKRNN-TAIIAVYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L+ILT+EKYF GS+E+L + S+ V P+L +FIV
Sbjct: 59 -LDVERDPIEYAKFMERY-AVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 116 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDENDLD-IALRIGAR 174
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 175 FIIISSHDLETLEINKENQRKLI 197
>pdb|4IJB|A Chain A, Crystal Structure Of Engineered Protein, Northeast
Structural Genomics Consortium Target Or288
Length = 256
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIALYXRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI+T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFXERY-AVGLSIVTEEKYFNGSYETLRKIASS-VSIPILXNDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V L +L + ++ + + + G L+E++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALKVKILTERELESLLEYARSYGXEPLIEINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIGIWSQDNETLEINKENQRKLI 198
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IA K+ SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKRN-ITAIIAAYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A L+I T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLAIATEEKYFNGSYETLRKIASS-VSIPILMWDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPAIVINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIEIASRDLETLEINKENQRKLI 198
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IAE K+ PS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAEYKRKDPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L I T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLFISTEEKYFNGSYETLRKIASS-VSIPILMYDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
QI A GAD V LI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIIINDENDLD 167
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 10/198 (5%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED 196
+V QL RRP L+ + P ++ N+R + A+IA K+ SPS L +
Sbjct: 11 DVVQLSLRRP--SLRAS--RQRPIISLRERILEFNKR-NITAIIAVYKRKSPSG--LDVE 63
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DP+E A+ E+ A L ILT+EKYF GS+E+L + S+ V P+L +FIV QI
Sbjct: 64 RDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQIDD 121
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXX 316
A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 122 AYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD-IALRIGARIIIIS 180
Query: 317 XXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 181 SRDLETLEINKENQRKLI 198
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASPSRGIL 193
+V QL RRP S+ A R I ++ N+R + A+IA K+ SPS L
Sbjct: 11 DVVQLSLRRP-SL------RASRQRPIISLRERILEFNKRN-ITAIIAVYKRKSPSG--L 60
Query: 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ 253
+ DP+E A+ E+ A L ILT+EKYF GS+E+L + S+ V P+L +FIV Q
Sbjct: 61 DVERDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQ 118
Query: 254 IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXX 313
I A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 119 IDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD-IALRIGARII 177
Query: 314 XXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 178 IISSRDLETLEINKENQRKLI 198
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKY GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ +++++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIGICSRDWETLEINKENQRKLI 198
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKY GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ ++ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLL 334
T E++ N +KL+
Sbjct: 176 FIGICSRDWETLEINKENQRKLI 198
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGSFENLEAV 233
++F PV + AR Y++ G + ++ DE Y +GS + A+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGSSQEHSAL 648
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 86 NEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRR 145
NE Q IR+ P ++ R+ + G+ ++ + IVW++DV V L
Sbjct: 148 NEDGELQFFSIRKNSENTPEFYFES--SIRLSDAGS--KDWVTHIVWYEDVLVAALSNNS 203
Query: 146 PLSMLKNALDNAPPAR 161
SM +A + P +R
Sbjct: 204 VFSMTVSASSHQPVSR 219
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|2V1L|A Chain A, Structure Of The Conserved Hypothetical Protein Vc1805
From Pathogenicity Island Vpi-2 Of Vibrio Cholerae O1
Biovar Eltor Str. N16961 Shares Structural Homology With
The Human P32 Protein
Length = 148
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLE 231
F PVEIA S G C+ +TD Y F LE
Sbjct: 57 FHPVEIALSQSSDGQWCIEYITDFAYVGNHFPELE 91
>pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 59 GSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQN 118
G+ + M DAE EWE G +I E QGI + P G +H GPF +
Sbjct: 124 GTIPCTRKMTDAEIN-GEYEWETGNVIVETFEKQGIDAAQMP--GVLVHSHGPFAWGKNA 180
Query: 119 EGNTPRNILEEIVWHKDVEVTQLKQRRP 146
E I+ E V + + QL + P
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLP 208
>pdb|1K0W|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 59 GSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQN 118
G+ + M DAE EWE G +I E QGI + P G +H GPF +
Sbjct: 124 GTIPCTRKMTDAEIN-GEYEWETGNVIVETFEKQGIDAAQMP--GVLVHSHGPFAWGKNA 180
Query: 119 EGNTPRNILEEIVWHKDVEVTQLKQRRP 146
E I+ E V + + QL + P
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLP 208
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 641
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 641
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 642
>pdb|1ZTP|A Chain A, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|B Chain B, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|C Chain C, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|2Q4K|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
Length = 251
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRS 235
P + A +R ++ +++ ++GG + + TD+ + G E A+R+
Sbjct: 135 PGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA 194
Query: 236 AGVKCPLLCKEFIVDAWQIYYA 257
AG+KC L K + IY A
Sbjct: 195 AGIKCLLTYKPDVYTYLGIYRA 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,738,102
Number of Sequences: 62578
Number of extensions: 372777
Number of successful extensions: 773
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 41
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)