Query 018446
Match_columns 355
No_of_seqs 217 out of 1244
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02460 indole-3-glycerol-pho 100.0 1.5E-94 3.3E-99 704.9 29.9 293 57-353 3-295 (338)
2 COG0134 TrpC Indole-3-glycerol 100.0 5.4E-73 1.2E-77 535.5 24.1 207 127-340 1-207 (254)
3 KOG4201 Anthranilate synthase 100.0 1.8E-73 3.9E-78 529.1 17.1 233 105-352 2-243 (289)
4 PF00218 IGPS: Indole-3-glycer 100.0 2.8E-70 6.2E-75 517.2 17.6 207 127-338 1-207 (254)
5 PRK13957 indole-3-glycerol-pho 100.0 2.5E-65 5.3E-70 482.2 23.5 200 124-339 2-201 (247)
6 PRK09427 bifunctional indole-3 100.0 5.5E-65 1.2E-69 513.8 25.5 206 124-339 4-209 (454)
7 PRK13802 bifunctional indole-3 100.0 3.9E-64 8.4E-69 528.2 25.6 217 124-352 1-217 (695)
8 PRK00278 trpC indole-3-glycero 100.0 2.3E-56 5E-61 421.2 23.2 209 123-338 1-209 (260)
9 cd00331 IGPS Indole-3-glycerol 100.0 1.6E-33 3.5E-38 255.7 17.8 160 175-336 9-168 (217)
10 PRK01130 N-acetylmannosamine-6 99.7 1.4E-16 3E-21 145.6 11.8 147 178-336 6-171 (221)
11 cd04729 NanE N-acetylmannosami 99.7 5.2E-16 1.1E-20 141.8 12.0 147 178-336 10-175 (219)
12 cd00958 DhnA Class I fructose- 99.2 1.5E-11 3.3E-16 113.1 7.3 135 195-338 19-179 (235)
13 TIGR00007 phosphoribosylformim 99.2 1.1E-10 2.5E-15 106.8 12.3 136 197-336 28-187 (230)
14 PRK00748 1-(5-phosphoribosyl)- 99.0 6.3E-09 1.4E-13 95.2 12.5 144 196-340 29-192 (233)
15 PRK04302 triosephosphate isome 98.7 5.7E-08 1.2E-12 89.8 8.3 102 222-325 40-150 (223)
16 PRK13125 trpA tryptophan synth 98.7 1.9E-07 4.2E-12 87.6 11.0 107 227-334 63-180 (244)
17 cd04732 HisA HisA. Phosphorib 98.2 2.5E-05 5.3E-10 71.5 13.5 138 196-336 28-188 (234)
18 cd00452 KDPG_aldolase KDPG and 98.2 1.5E-05 3.1E-10 72.1 10.6 109 198-317 17-125 (190)
19 cd04722 TIM_phosphate_binding 98.2 9.5E-06 2E-10 69.3 8.7 128 198-327 13-154 (200)
20 TIGR03128 RuMP_HxlA 3-hexulose 98.2 8.6E-06 1.9E-10 73.4 8.5 115 198-317 13-134 (206)
21 cd04726 KGPDC_HPS 3-Keto-L-gul 97.9 7.4E-05 1.6E-09 66.8 10.3 133 198-334 14-154 (202)
22 PRK09140 2-dehydro-3-deoxy-6-p 97.8 0.00035 7.5E-09 64.9 11.9 135 178-335 11-146 (206)
23 cd04727 pdxS PdxS is a subunit 97.3 0.0019 4.2E-08 63.3 11.0 119 178-317 10-140 (283)
24 PRK07455 keto-hydroxyglutarate 97.2 0.0035 7.6E-08 57.2 11.1 117 178-315 13-131 (187)
25 cd04739 DHOD_like Dihydroorota 97.2 0.0033 7.2E-08 61.8 11.3 134 178-321 101-271 (325)
26 PRK07565 dihydroorotate dehydr 97.1 0.008 1.7E-07 59.1 12.6 134 177-321 102-273 (334)
27 PF04131 NanE: Putative N-acet 96.9 0.0065 1.4E-07 56.8 9.5 115 200-324 2-127 (192)
28 TIGR01163 rpe ribulose-phospha 96.8 0.012 2.6E-07 52.7 10.3 115 199-318 13-135 (210)
29 PRK06552 keto-hydroxyglutarate 96.8 0.015 3.2E-07 54.6 11.2 120 178-315 14-135 (213)
30 TIGR01303 IMP_DH_rel_1 IMP deh 96.8 0.0099 2.1E-07 61.9 10.7 119 197-317 224-358 (475)
31 PTZ00314 inosine-5'-monophosph 96.7 0.014 3E-07 60.9 11.5 123 198-322 241-379 (495)
32 cd04736 MDH_FMN Mandelate dehy 96.6 0.0075 1.6E-07 60.9 8.1 95 226-323 224-325 (361)
33 PRK05567 inosine 5'-monophosph 96.5 0.021 4.5E-07 59.2 11.2 123 193-317 223-361 (486)
34 PRK05718 keto-hydroxyglutarate 96.5 0.029 6.2E-07 52.7 10.8 119 178-315 16-134 (212)
35 PRK00043 thiE thiamine-phospha 96.5 0.025 5.3E-07 50.8 9.9 107 198-318 22-133 (212)
36 TIGR00343 pyridoxal 5'-phospha 96.4 0.019 4.2E-07 56.5 9.6 111 201-316 21-141 (287)
37 cd02809 alpha_hydroxyacid_oxid 96.4 0.051 1.1E-06 52.7 12.0 118 202-322 134-262 (299)
38 COG3010 NanE Putative N-acetyl 96.3 0.025 5.4E-07 53.9 9.1 144 178-335 16-178 (229)
39 TIGR01304 IMP_DH_rel_2 IMP deh 96.3 0.043 9.3E-07 55.7 11.3 124 197-324 142-292 (369)
40 TIGR01302 IMP_dehydrog inosine 96.2 0.029 6.2E-07 57.7 10.1 119 198-318 224-358 (450)
41 cd02922 FCB2_FMN Flavocytochro 96.2 0.067 1.5E-06 53.6 12.2 98 225-325 200-309 (344)
42 cd00564 TMP_TenI Thiamine mono 96.2 0.069 1.5E-06 46.5 10.8 107 198-319 13-125 (196)
43 PRK06843 inosine 5-monophospha 96.1 0.086 1.9E-06 54.2 12.8 144 161-321 129-290 (404)
44 cd04731 HisF The cyclase subun 96.1 0.1 2.2E-06 48.6 12.2 136 197-336 27-191 (243)
45 cd02811 IDI-2_FMN Isopentenyl- 95.9 0.071 1.5E-06 52.6 10.8 132 178-317 114-285 (326)
46 PRK13585 1-(5-phosphoribosyl)- 95.9 0.2 4.2E-06 46.4 12.9 136 197-336 32-191 (241)
47 TIGR03569 NeuB_NnaB N-acetylne 95.7 0.041 9E-07 54.9 8.0 55 270-325 71-125 (329)
48 cd04740 DHOD_1B_like Dihydroor 95.6 0.15 3.3E-06 48.8 11.3 132 198-336 103-276 (296)
49 TIGR01182 eda Entner-Doudoroff 95.6 0.081 1.8E-06 49.6 9.1 120 178-316 9-128 (204)
50 TIGR00693 thiE thiamine-phosph 95.5 0.018 3.9E-07 51.5 4.6 107 199-318 15-125 (196)
51 TIGR03586 PseI pseudaminic aci 95.5 0.045 9.7E-07 54.7 7.7 53 271-324 73-125 (327)
52 PRK08649 inosine 5-monophospha 95.5 0.18 3.9E-06 51.1 12.0 127 197-326 141-295 (368)
53 PLN02535 glycolate oxidase 95.5 0.07 1.5E-06 54.1 9.1 96 226-324 211-315 (364)
54 cd00381 IMPDH IMPDH: The catal 95.5 0.14 3.1E-06 50.6 11.1 119 198-321 94-231 (325)
55 CHL00162 thiG thiamin biosynth 95.4 0.054 1.2E-06 52.9 7.5 78 197-276 146-226 (267)
56 PRK02083 imidazole glycerol ph 95.2 0.48 1E-05 44.6 13.2 136 196-335 29-194 (253)
57 TIGR00736 nifR3_rel_arch TIM-b 95.2 0.061 1.3E-06 51.3 7.0 74 197-274 148-226 (231)
58 PLN02274 inosine-5'-monophosph 95.1 0.2 4.2E-06 52.8 11.3 127 196-324 246-388 (505)
59 PRK05581 ribulose-phosphate 3- 95.1 0.18 3.8E-06 45.7 9.7 125 186-319 6-141 (220)
60 TIGR01037 pyrD_sub1_fam dihydr 95.0 0.11 2.4E-06 49.9 8.4 91 198-289 170-289 (300)
61 cd04724 Tryptophan_synthase_al 94.9 0.064 1.4E-06 50.7 6.3 116 199-317 16-163 (242)
62 cd02810 DHOD_DHPD_FMN Dihydroo 94.8 0.27 6E-06 46.7 10.5 131 178-318 100-274 (289)
63 TIGR00735 hisF imidazoleglycer 94.8 0.21 4.5E-06 47.3 9.6 95 195-290 153-252 (254)
64 PF05690 ThiG: Thiazole biosyn 94.6 0.14 3E-06 49.6 7.8 73 198-272 133-208 (247)
65 PRK05437 isopentenyl pyrophosp 94.6 0.23 5.1E-06 49.7 9.7 136 178-321 122-295 (352)
66 cd02940 DHPD_FMN Dihydropyrimi 94.5 0.14 3E-06 49.7 7.8 75 198-273 181-286 (299)
67 TIGR00007 phosphoribosylformim 94.5 0.17 3.6E-06 46.6 7.9 77 196-273 144-223 (230)
68 PF01081 Aldolase: KDPG and KH 94.5 0.26 5.6E-06 46.0 9.1 119 178-315 9-127 (196)
69 PRK07259 dihydroorotate dehydr 94.4 0.33 7.2E-06 46.7 10.1 144 178-336 93-279 (301)
70 TIGR02151 IPP_isom_2 isopenten 94.3 0.21 4.5E-06 49.5 8.8 117 199-317 130-284 (333)
71 TIGR03572 WbuZ glycosyl amidat 94.3 1.4 3E-05 40.8 13.6 136 196-336 29-195 (232)
72 PRK06015 keto-hydroxyglutarate 94.3 0.3 6.4E-06 45.9 9.2 108 198-316 17-124 (201)
73 PRK07028 bifunctional hexulose 94.3 0.21 4.6E-06 50.7 8.9 114 199-316 18-138 (430)
74 TIGR00735 hisF imidazoleglycer 94.3 1.3 2.9E-05 41.9 13.6 137 196-336 29-197 (254)
75 PLN02334 ribulose-phosphate 3- 94.2 0.39 8.4E-06 44.7 9.8 124 187-315 11-145 (229)
76 cd04732 HisA HisA. Phosphorib 94.2 0.19 4.1E-06 46.0 7.6 79 195-274 144-225 (234)
77 cd04728 ThiG Thiazole synthase 94.2 0.17 3.8E-06 49.1 7.5 74 198-273 133-209 (248)
78 PRK00748 1-(5-phosphoribosyl)- 94.1 0.22 4.7E-06 45.7 7.8 78 196-274 145-226 (233)
79 cd02940 DHPD_FMN Dihydropyrimi 94.1 0.43 9.4E-06 46.3 10.2 117 198-317 114-282 (299)
80 TIGR02708 L_lactate_ox L-lacta 94.1 0.68 1.5E-05 47.1 12.0 90 226-318 216-314 (367)
81 PRK13585 1-(5-phosphoribosyl)- 94.1 0.29 6.2E-06 45.4 8.6 87 196-283 148-238 (241)
82 TIGR03572 WbuZ glycosyl amidat 94.0 0.21 4.7E-06 46.1 7.7 74 196-270 152-229 (232)
83 COG2022 ThiG Uncharacterized e 94.0 0.16 3.4E-06 49.3 6.8 78 197-276 139-219 (262)
84 PRK00208 thiG thiazole synthas 94.0 0.2 4.2E-06 48.8 7.5 74 198-273 133-209 (250)
85 PRK05286 dihydroorotate dehydr 93.9 0.42 9.2E-06 47.5 9.9 74 198-272 226-322 (344)
86 PF01070 FMN_dh: FMN-dependent 93.8 0.17 3.6E-06 50.9 7.0 91 225-318 212-311 (356)
87 PRK07807 inosine 5-monophospha 93.8 0.053 1.2E-06 56.6 3.6 94 179-272 258-363 (479)
88 PRK01130 N-acetylmannosamine-6 93.7 0.26 5.6E-06 45.3 7.6 76 198-276 128-210 (221)
89 cd02809 alpha_hydroxyacid_oxid 93.7 0.53 1.1E-05 45.7 10.0 106 200-318 84-202 (299)
90 PRK05458 guanosine 5'-monophos 93.7 0.06 1.3E-06 53.8 3.6 71 201-272 152-234 (326)
91 PRK01033 imidazole glycerol ph 93.6 2.1 4.4E-05 40.9 13.7 136 197-336 30-194 (258)
92 cd02911 arch_FMN Archeal FMN-b 93.6 0.18 4E-06 47.6 6.5 68 197-267 152-219 (233)
93 PRK05458 guanosine 5'-monophos 93.6 0.57 1.2E-05 47.0 10.2 121 198-320 97-234 (326)
94 cd00945 Aldolase_Class_I Class 93.5 0.35 7.5E-06 42.1 7.7 129 198-336 14-168 (201)
95 cd00429 RPE Ribulose-5-phospha 93.5 0.97 2.1E-05 40.3 10.6 116 198-319 13-137 (211)
96 PRK07259 dihydroorotate dehydr 93.4 0.39 8.5E-06 46.3 8.5 76 198-274 170-269 (301)
97 PLN02591 tryptophan synthase 93.4 0.89 1.9E-05 43.9 10.9 81 223-307 63-153 (250)
98 cd00958 DhnA Class I fructose- 93.3 0.53 1.2E-05 43.5 8.9 76 202-283 148-229 (235)
99 cd04737 LOX_like_FMN L-Lactate 93.2 0.42 9.1E-06 48.2 8.6 94 226-322 209-311 (351)
100 PLN02979 glycolate oxidase 93.2 0.39 8.5E-06 49.0 8.4 96 226-324 211-315 (366)
101 TIGR00737 nifR3_yhdG putative 93.1 0.88 1.9E-05 44.4 10.6 129 178-315 64-221 (319)
102 TIGR00262 trpA tryptophan synt 93.1 0.35 7.5E-06 46.4 7.6 46 224-271 184-230 (256)
103 PRK06852 aldolase; Validated 93.0 0.61 1.3E-05 46.4 9.3 136 190-336 52-227 (304)
104 PF03102 NeuB: NeuB family; I 92.8 0.33 7.1E-06 46.6 6.9 53 271-324 52-104 (241)
105 cd00945 Aldolase_Class_I Class 92.8 0.41 8.9E-06 41.6 7.0 133 176-314 48-199 (201)
106 PRK02083 imidazole glycerol ph 92.7 0.79 1.7E-05 43.2 9.3 95 195-290 151-250 (253)
107 PRK09250 fructose-bisphosphate 92.7 0.55 1.2E-05 47.6 8.6 114 195-317 89-238 (348)
108 TIGR01306 GMP_reduct_2 guanosi 92.6 0.12 2.7E-06 51.5 3.9 70 198-268 146-227 (321)
109 cd04740 DHOD_1B_like Dihydroor 92.5 0.48 1.1E-05 45.3 7.7 76 198-274 167-266 (296)
110 TIGR00262 trpA tryptophan synt 92.5 0.46 9.9E-06 45.6 7.5 81 224-307 72-162 (256)
111 PRK14024 phosphoribosyl isomer 92.4 3.4 7.3E-05 39.0 13.1 138 198-336 33-188 (241)
112 PRK07807 inosine 5-monophospha 92.4 1.1 2.5E-05 46.9 10.8 119 198-318 227-361 (479)
113 PLN02493 probable peroxisomal 92.4 0.58 1.3E-05 47.7 8.4 95 226-323 212-315 (367)
114 TIGR00737 nifR3_yhdG putative 92.4 0.38 8.2E-06 47.0 6.9 79 197-276 147-230 (319)
115 cd04738 DHOD_2_like Dihydrooro 92.4 0.67 1.5E-05 45.7 8.6 74 198-272 217-313 (327)
116 COG0800 Eda 2-keto-3-deoxy-6-p 92.3 0.71 1.5E-05 43.9 8.4 117 178-313 14-130 (211)
117 PRK07565 dihydroorotate dehydr 92.3 0.33 7.1E-06 47.8 6.4 74 198-274 178-274 (334)
118 PRK04180 pyridoxal biosynthesi 92.3 0.29 6.3E-06 48.6 5.9 120 178-316 19-148 (293)
119 PLN02274 inosine-5'-monophosph 92.2 0.16 3.4E-06 53.5 4.3 94 179-273 279-385 (505)
120 PRK10415 tRNA-dihydrouridine s 92.1 0.72 1.6E-05 45.5 8.6 85 191-276 143-232 (321)
121 cd04730 NPD_like 2-Nitropropan 91.9 0.62 1.3E-05 42.7 7.3 107 201-318 17-131 (236)
122 PRK13125 trpA tryptophan synth 91.9 0.87 1.9E-05 43.0 8.5 96 177-287 130-236 (244)
123 PRK06843 inosine 5-monophospha 91.8 0.11 2.5E-06 53.3 2.7 93 179-271 184-288 (404)
124 cd03332 LMO_FMN L-Lactate 2-mo 91.8 0.72 1.6E-05 47.2 8.4 93 226-321 241-342 (383)
125 cd04729 NanE N-acetylmannosami 91.8 0.58 1.3E-05 43.0 7.0 76 198-276 132-214 (219)
126 PRK08318 dihydropyrimidine deh 91.6 0.71 1.5E-05 46.8 8.1 96 198-294 181-314 (420)
127 cd04739 DHOD_like Dihydroorota 91.5 0.64 1.4E-05 45.9 7.4 89 198-289 176-293 (325)
128 PRK11197 lldD L-lactate dehydr 91.4 0.68 1.5E-05 47.4 7.7 95 226-323 233-336 (381)
129 cd02801 DUS_like_FMN Dihydrour 91.4 0.58 1.3E-05 42.6 6.5 78 198-276 139-221 (231)
130 PRK11840 bifunctional sulfur c 91.3 0.64 1.4E-05 46.8 7.3 77 198-276 207-286 (326)
131 PRK05096 guanosine 5'-monophos 91.0 0.16 3.5E-06 51.3 2.8 89 179-267 141-241 (346)
132 cd04731 HisF The cyclase subun 91.0 1.2 2.5E-05 41.5 8.3 90 195-285 147-241 (243)
133 PRK09427 bifunctional indole-3 91.0 2.2 4.9E-05 44.5 11.1 144 177-338 160-306 (454)
134 COG0107 HisF Imidazoleglycerol 91.0 2.4 5.2E-05 41.4 10.5 127 161-290 110-252 (256)
135 PLN02495 oxidoreductase, actin 90.9 3 6.4E-05 42.8 11.7 134 177-321 114-304 (385)
136 PTZ00314 inosine-5'-monophosph 90.7 0.17 3.6E-06 53.1 2.6 95 179-273 272-378 (495)
137 cd00381 IMPDH IMPDH: The catal 90.7 0.26 5.6E-06 48.8 3.8 71 200-270 146-228 (325)
138 TIGR00343 pyridoxal 5'-phospha 90.6 2.1 4.4E-05 42.6 9.9 89 223-321 182-277 (287)
139 COG0107 HisF Imidazoleglycerol 90.5 1.6 3.5E-05 42.5 8.9 150 193-346 26-207 (256)
140 PRK07114 keto-hydroxyglutarate 90.4 1.7 3.7E-05 41.4 8.9 122 178-317 16-140 (222)
141 TIGR03234 OH-pyruv-isom hydrox 90.3 3.9 8.4E-05 37.9 11.0 64 253-316 89-175 (254)
142 cd08562 GDPD_EcUgpQ_like Glyce 90.0 6.4 0.00014 35.8 12.0 121 176-314 100-225 (229)
143 PRK10550 tRNA-dihydrouridine s 90.0 0.77 1.7E-05 45.4 6.4 80 198-278 149-234 (312)
144 cd02801 DUS_like_FMN Dihydrour 90.0 2.1 4.4E-05 39.0 8.8 131 177-316 55-213 (231)
145 cd04726 KGPDC_HPS 3-Keto-L-gul 89.8 1 2.2E-05 40.2 6.6 80 198-280 115-198 (202)
146 TIGR01037 pyrD_sub1_fam dihydr 89.7 3.7 8E-05 39.5 10.7 131 178-318 92-265 (300)
147 TIGR03151 enACPred_II putative 89.7 0.99 2.1E-05 44.4 6.9 93 161-273 99-195 (307)
148 PRK04128 1-(5-phosphoribosyl)- 89.7 1.8 4E-05 40.8 8.4 92 197-295 30-125 (228)
149 PRK14024 phosphoribosyl isomer 89.7 1.6 3.5E-05 41.1 8.1 93 190-283 139-238 (241)
150 TIGR03151 enACPred_II putative 89.5 2.5 5.4E-05 41.6 9.5 113 198-323 24-143 (307)
151 PRK01033 imidazole glycerol ph 89.2 1.6 3.6E-05 41.6 7.8 72 195-267 150-225 (258)
152 cd04727 pdxS PdxS is a subunit 89.2 2.9 6.4E-05 41.5 9.7 87 226-321 182-274 (283)
153 PRK13307 bifunctional formalde 89.1 1.3 2.9E-05 45.4 7.6 181 125-321 124-312 (391)
154 TIGR01306 GMP_reduct_2 guanosi 89.0 3.6 7.8E-05 41.3 10.3 113 201-316 97-227 (321)
155 cd02810 DHOD_DHPD_FMN Dihydroo 88.9 1 2.2E-05 42.9 6.2 76 198-274 177-278 (289)
156 PRK13111 trpA tryptophan synth 88.9 1.8 3.9E-05 41.9 7.9 80 225-307 75-164 (258)
157 PRK08318 dihydropyrimidine deh 88.6 1.3 2.9E-05 44.8 7.2 121 198-321 114-287 (420)
158 TIGR01949 AroFGH_arch predicte 88.6 3.2 6.9E-05 39.4 9.3 127 195-336 34-190 (258)
159 PRK07028 bifunctional hexulose 88.6 1.5 3.3E-05 44.6 7.6 108 198-307 119-236 (430)
160 PRK13523 NADPH dehydrogenase N 88.5 2 4.3E-05 42.9 8.2 79 198-277 228-314 (337)
161 PRK05567 inosine 5'-monophosph 88.5 0.35 7.6E-06 50.3 3.0 91 180-270 260-362 (486)
162 TIGR01305 GMP_reduct_1 guanosi 88.4 0.33 7.2E-06 49.1 2.6 89 180-268 141-241 (343)
163 cd00959 DeoC 2-deoxyribose-5-p 88.4 1.1 2.4E-05 41.1 5.8 109 203-315 75-202 (203)
164 TIGR01859 fruc_bis_ald_ fructo 88.3 9.8 0.00021 37.3 12.6 97 238-336 72-198 (282)
165 PRK07226 fructose-bisphosphate 88.0 7.6 0.00016 37.2 11.5 125 195-335 37-193 (267)
166 cd08564 GDPD_GsGDE_like Glycer 88.0 11 0.00023 35.8 12.4 132 162-315 109-254 (265)
167 PRK09856 fructoselysine 3-epim 87.9 4.4 9.4E-05 37.8 9.6 105 198-315 48-178 (275)
168 PLN02617 imidazole glycerol ph 87.9 3.7 8.1E-05 43.8 10.2 104 191-295 261-392 (538)
169 cd04730 NPD_like 2-Nitropropan 87.7 1.1 2.4E-05 41.0 5.4 72 201-274 113-191 (236)
170 cd04723 HisA_HisF Phosphoribos 87.6 5.2 0.00011 37.6 10.0 138 193-336 31-187 (233)
171 PRK13209 L-xylulose 5-phosphat 87.6 12 0.00025 35.2 12.4 65 252-316 103-185 (283)
172 cd08574 GDPD_GDE_2_3_6 Glycero 87.6 5.9 0.00013 37.5 10.4 120 177-313 128-248 (252)
173 PRK12677 xylose isomerase; Pro 87.5 7.9 0.00017 39.5 11.8 129 188-316 22-212 (384)
174 TIGR01949 AroFGH_arch predicte 87.5 2.2 4.7E-05 40.6 7.4 76 203-285 162-244 (258)
175 cd00452 KDPG_aldolase KDPG and 87.5 2.8 6.1E-05 37.9 7.9 101 202-317 68-172 (190)
176 COG0042 tRNA-dihydrouridine sy 87.4 1.6 3.4E-05 43.5 6.7 80 196-276 151-236 (323)
177 TIGR01302 IMP_dehydrog inosine 87.3 0.47 1E-05 48.9 3.0 72 200-271 276-359 (450)
178 cd03319 L-Ala-DL-Glu_epimerase 87.3 5.9 0.00013 38.3 10.4 102 198-304 192-295 (316)
179 cd08563 GDPD_TtGDE_like Glycer 87.1 13 0.00029 34.1 12.2 121 176-314 102-226 (230)
180 PRK13397 3-deoxy-7-phosphohept 87.1 1.3 2.9E-05 43.0 5.8 84 199-325 31-114 (250)
181 CHL00200 trpA tryptophan synth 87.1 4.9 0.00011 39.0 9.7 43 227-271 191-234 (263)
182 TIGR01305 GMP_reduct_1 guanosi 87.0 4.3 9.4E-05 41.3 9.6 114 201-316 110-241 (343)
183 TIGR00742 yjbN tRNA dihydrouri 86.9 1.6 3.5E-05 43.2 6.5 76 198-274 142-229 (318)
184 TIGR02129 hisA_euk phosphoribo 86.9 2.1 4.6E-05 41.7 7.0 86 198-288 38-126 (253)
185 cd04724 Tryptophan_synthase_al 86.6 2.9 6.3E-05 39.6 7.7 66 201-269 143-216 (242)
186 cd04735 OYE_like_4_FMN Old yel 86.4 2.2 4.8E-05 42.5 7.1 102 198-303 236-345 (353)
187 PRK13587 1-(5-phosphoribosyl)- 86.3 15 0.00032 34.9 12.2 136 197-336 31-190 (234)
188 PF01729 QRPTase_C: Quinolinat 86.2 1.9 4E-05 39.3 6.0 89 223-316 63-155 (169)
189 cd02803 OYE_like_FMN_family Ol 86.2 5.2 0.00011 38.7 9.4 116 200-316 144-311 (327)
190 cd08579 GDPD_memb_like Glycero 86.1 19 0.00042 32.8 12.6 133 161-316 83-218 (220)
191 PF04476 DUF556: Protein of un 85.9 2.7 5.8E-05 40.7 7.1 145 184-335 53-232 (235)
192 COG2876 AroA 3-deoxy-D-arabino 85.9 0.57 1.2E-05 46.3 2.6 52 272-325 93-144 (286)
193 PRK04165 acetyl-CoA decarbonyl 85.9 5.1 0.00011 42.0 9.7 121 175-306 90-219 (450)
194 COG1891 Uncharacterized protei 85.9 0.55 1.2E-05 44.3 2.4 79 256-335 139-232 (235)
195 TIGR02708 L_lactate_ox L-lacta 85.9 1.8 4E-05 44.1 6.3 68 200-268 239-312 (367)
196 cd08556 GDPD Glycerophosphodie 85.6 23 0.00049 30.6 13.2 135 162-315 50-187 (189)
197 PRK15452 putative protease; Pr 85.6 2.3 5E-05 44.2 7.0 66 250-317 12-97 (443)
198 cd02803 OYE_like_FMN_family Ol 85.4 2.8 6E-05 40.5 7.1 79 198-277 229-320 (327)
199 TIGR03128 RuMP_HxlA 3-hexulose 85.3 3.8 8.3E-05 36.9 7.5 85 198-283 114-201 (206)
200 PRK05198 2-dehydro-3-deoxyphos 85.3 1.7 3.6E-05 42.8 5.5 52 272-325 64-116 (264)
201 COG0036 Rpe Pentose-5-phosphat 84.9 5.6 0.00012 38.2 8.7 110 197-315 71-196 (220)
202 PRK08673 3-deoxy-7-phosphohept 84.9 1.9 4.1E-05 43.4 5.9 50 274-325 143-192 (335)
203 cd04736 MDH_FMN Mandelate dehy 84.8 0.99 2.1E-05 45.9 3.8 92 179-272 227-322 (361)
204 PLN02535 glycolate oxidase 84.8 1.7 3.7E-05 44.2 5.5 74 198-272 233-311 (364)
205 TIGR01362 KDO8P_synth 3-deoxy- 84.5 1.8 4E-05 42.4 5.4 52 272-325 56-108 (258)
206 COG1830 FbaB DhnA-type fructos 84.5 4.3 9.3E-05 40.0 7.9 128 193-336 39-200 (265)
207 smart00052 EAL Putative diguan 84.5 5.7 0.00012 35.4 8.2 108 178-312 118-227 (241)
208 PLN02446 (5-phosphoribosyl)-5- 84.4 4.4 9.6E-05 39.7 8.0 139 197-340 43-209 (262)
209 TIGR03849 arch_ComA phosphosul 84.2 4.8 0.0001 39.0 8.0 100 200-321 44-159 (237)
210 cd01568 QPRTase_NadC Quinolina 84.0 3.6 7.8E-05 39.8 7.2 39 281-320 171-212 (269)
211 PRK04180 pyridoxal biosynthesi 83.9 2.4 5.3E-05 42.2 6.0 90 223-322 188-284 (293)
212 cd00331 IGPS Indole-3-glycerol 83.7 3.7 8E-05 37.6 6.8 76 203-278 134-211 (217)
213 PLN02591 tryptophan synthase 83.6 1.9 4.2E-05 41.6 5.1 42 228-271 179-221 (250)
214 PRK12595 bifunctional 3-deoxy- 83.6 2.1 4.6E-05 43.3 5.6 51 272-324 166-216 (360)
215 PRK13587 1-(5-phosphoribosyl)- 83.4 4.5 9.7E-05 38.3 7.4 110 161-273 112-226 (234)
216 TIGR01036 pyrD_sub2 dihydrooro 83.2 2 4.3E-05 42.9 5.2 118 197-316 151-317 (335)
217 cd00564 TMP_TenI Thiamine mono 83.1 5 0.00011 34.8 7.1 77 198-277 104-187 (196)
218 TIGR01303 IMP_DH_rel_1 IMP deh 83.1 1.1 2.4E-05 46.9 3.5 67 200-267 277-356 (475)
219 cd04722 TIM_phosphate_binding 83.0 6.4 0.00014 33.4 7.6 130 178-316 59-199 (200)
220 cd03315 MLE_like Muconate lact 82.9 9.8 0.00021 35.9 9.5 101 198-303 144-246 (265)
221 cd02808 GltS_FMN Glutamate syn 82.8 2.5 5.4E-05 43.0 5.8 75 198-272 226-318 (392)
222 PTZ00170 D-ribulose-5-phosphat 82.7 9.4 0.0002 35.9 9.2 124 187-313 10-142 (228)
223 PRK00043 thiE thiamine-phospha 82.4 5.1 0.00011 35.9 7.1 78 198-281 113-201 (212)
224 cd08582 GDPD_like_2 Glyceropho 82.4 14 0.00031 33.9 10.1 136 162-316 88-229 (233)
225 PRK13398 3-deoxy-7-phosphohept 82.4 2.2 4.9E-05 41.4 5.0 49 274-324 77-125 (266)
226 TIGR01769 GGGP geranylgeranylg 82.2 1 2.2E-05 42.4 2.5 89 198-294 12-108 (205)
227 PRK11815 tRNA-dihydrouridine s 82.1 3.4 7.4E-05 41.0 6.3 77 198-275 152-240 (333)
228 PRK13340 alanine racemase; Rev 82.1 23 0.0005 35.9 12.3 103 199-315 80-199 (406)
229 COG0329 DapA Dihydrodipicolina 82.0 3.5 7.7E-05 40.4 6.3 59 175-243 72-134 (299)
230 PRK13396 3-deoxy-7-phosphohept 82.0 2.5 5.5E-05 43.0 5.4 52 272-325 149-200 (352)
231 cd07943 DRE_TIM_HOA 4-hydroxy- 81.9 17 0.00037 34.5 10.8 134 198-336 23-178 (263)
232 PLN02826 dihydroorotate dehydr 81.9 4.1 8.8E-05 42.1 7.0 74 198-272 277-374 (409)
233 PRK06096 molybdenum transport 81.9 2.1 4.4E-05 42.3 4.6 45 277-322 176-222 (284)
234 PRK05848 nicotinate-nucleotide 81.8 3.1 6.7E-05 40.8 5.8 42 276-318 167-211 (273)
235 cd04738 DHOD_2_like Dihydrooro 81.8 13 0.00029 36.6 10.3 133 178-316 130-309 (327)
236 cd00952 CHBPH_aldolase Trans-o 81.7 4.4 9.4E-05 39.8 6.8 60 175-244 76-140 (309)
237 PRK05286 dihydroorotate dehydr 81.6 3.7 8.1E-05 40.9 6.4 133 177-315 138-317 (344)
238 PRK07695 transcriptional regul 81.6 8.3 0.00018 35.0 8.2 103 199-317 17-123 (201)
239 TIGR01361 DAHP_synth_Bsub phos 81.6 2.9 6.3E-05 40.3 5.5 49 274-324 75-123 (260)
240 PRK04452 acetyl-CoA decarbonyl 81.4 4.4 9.5E-05 40.7 6.8 139 175-318 46-204 (319)
241 PRK09140 2-dehydro-3-deoxy-6-p 81.2 8 0.00017 36.1 8.1 105 201-317 74-180 (206)
242 TIGR01334 modD putative molybd 81.0 5.3 0.00011 39.3 7.1 45 276-321 174-220 (277)
243 PRK08673 3-deoxy-7-phosphohept 80.4 16 0.00036 36.8 10.5 145 175-333 92-257 (335)
244 cd04737 LOX_like_FMN L-Lactate 80.4 3.1 6.7E-05 42.1 5.4 71 201-272 233-309 (351)
245 TIGR02151 IPP_isom_2 isopenten 80.4 8.7 0.00019 38.2 8.5 72 200-271 193-286 (333)
246 PRK06096 molybdenum transport 80.3 4.3 9.4E-05 40.1 6.3 64 250-316 198-264 (284)
247 CHL00200 trpA tryptophan synth 80.3 3.4 7.4E-05 40.1 5.5 79 225-307 78-166 (263)
248 cd03174 DRE_TIM_metallolyase D 80.2 17 0.00036 33.7 9.8 132 198-336 20-183 (265)
249 PRK07107 inosine 5-monophospha 80.2 1.1 2.3E-05 47.3 2.2 88 180-267 274-380 (502)
250 PRK05848 nicotinate-nucleotide 80.2 4.3 9.4E-05 39.8 6.2 141 158-317 105-258 (273)
251 TIGR01036 pyrD_sub2 dihydrooro 80.0 7.3 0.00016 38.9 7.8 74 198-272 225-321 (335)
252 cd02811 IDI-2_FMN Isopentenyl- 80.0 5.2 0.00011 39.7 6.7 70 200-270 192-286 (326)
253 PRK07428 nicotinate-nucleotide 80.0 2.5 5.4E-05 41.8 4.5 33 288-321 196-228 (288)
254 PRK13111 trpA tryptophan synth 79.9 6.5 0.00014 38.0 7.3 42 227-271 189-231 (258)
255 PRK12457 2-dehydro-3-deoxyphos 79.9 3.5 7.6E-05 40.9 5.4 52 272-325 70-122 (281)
256 PRK09997 hydroxypyruvate isome 79.8 43 0.00092 31.3 12.5 63 254-316 91-176 (258)
257 PRK08883 ribulose-phosphate 3- 79.7 6 0.00013 37.3 6.8 87 193-282 113-209 (220)
258 cd01299 Met_dep_hydrolase_A Me 79.4 4.6 0.0001 38.7 6.1 60 253-313 125-197 (342)
259 cd04741 DHOD_1A_like Dihydroor 79.4 10 0.00023 36.9 8.6 45 227-272 230-276 (294)
260 PRK08508 biotin synthase; Prov 79.4 16 0.00034 35.3 9.7 122 197-319 40-189 (279)
261 PLN02716 nicotinate-nucleotide 79.4 8.3 0.00018 38.7 7.9 48 289-337 204-259 (308)
262 cd03316 MR_like Mandelate race 79.3 9.8 0.00021 37.2 8.4 92 200-298 206-299 (357)
263 cd02930 DCR_FMN 2,4-dienoyl-Co 79.2 6.6 0.00014 39.1 7.3 78 199-277 226-315 (353)
264 PRK09722 allulose-6-phosphate 79.1 17 0.00038 34.7 9.8 113 198-315 70-196 (229)
265 cd00377 ICL_PEPM Members of th 78.8 3.4 7.4E-05 39.3 4.9 68 198-272 161-230 (243)
266 PRK14114 1-(5-phosphoribosyl)- 78.5 15 0.00032 35.1 9.1 136 197-336 30-186 (241)
267 PRK08649 inosine 5-monophospha 78.5 3.6 7.9E-05 41.8 5.3 35 239-273 256-290 (368)
268 cd02932 OYE_YqiM_FMN Old yello 78.4 7.2 0.00015 38.4 7.2 78 199-277 243-329 (336)
269 PRK05437 isopentenyl pyrophosp 78.2 7.9 0.00017 38.9 7.5 73 200-272 200-294 (352)
270 PRK04147 N-acetylneuraminate l 78.1 4.4 9.5E-05 39.1 5.5 62 175-246 72-137 (293)
271 PRK02227 hypothetical protein; 77.7 6.3 0.00014 38.3 6.4 97 240-338 118-234 (238)
272 PRK07107 inosine 5-monophospha 77.7 16 0.00035 38.7 9.9 115 198-315 242-380 (502)
273 PRK02615 thiamine-phosphate py 77.5 7.1 0.00015 39.5 7.0 101 198-316 158-267 (347)
274 PRK14057 epimerase; Provisiona 77.3 23 0.0005 34.6 10.2 114 198-315 86-220 (254)
275 PRK06512 thiamine-phosphate py 77.3 7 0.00015 36.9 6.4 104 198-318 27-140 (221)
276 PF02679 ComA: (2R)-phospho-3- 77.3 3.9 8.4E-05 39.7 4.8 117 199-337 56-195 (244)
277 PF00977 His_biosynth: Histidi 77.2 2.2 4.8E-05 40.0 3.1 143 194-341 26-194 (229)
278 cd01573 modD_like ModD; Quinol 77.1 15 0.00033 35.7 8.9 32 289-321 184-215 (272)
279 cd03332 LMO_FMN L-Lactate 2-mo 77.1 10 0.00022 38.9 8.0 74 197-272 262-341 (383)
280 TIGR00542 hxl6Piso_put hexulos 77.0 66 0.0014 30.3 13.0 81 253-333 99-199 (279)
281 TIGR03217 4OH_2_O_val_ald 4-hy 76.8 34 0.00073 34.3 11.4 133 198-336 25-180 (333)
282 PRK13813 orotidine 5'-phosphat 76.7 6.1 0.00013 36.1 5.8 67 225-293 42-111 (215)
283 PF00563 EAL: EAL domain; Int 76.7 4.1 9E-05 36.1 4.6 38 275-313 190-228 (236)
284 PF00701 DHDPS: Dihydrodipicol 76.7 6.2 0.00013 37.7 6.1 63 175-247 69-135 (289)
285 PRK08883 ribulose-phosphate 3- 76.6 27 0.00058 33.0 10.1 113 198-316 69-195 (220)
286 PRK11930 putative bifunctional 76.4 1.3E+02 0.0028 33.4 17.1 104 198-316 498-616 (822)
287 TIGR01334 modD putative molybd 76.4 27 0.00059 34.4 10.5 142 157-316 106-263 (277)
288 PRK14114 1-(5-phosphoribosyl)- 76.2 9.4 0.0002 36.5 7.1 120 160-283 108-239 (241)
289 PRK07998 gatY putative fructos 76.2 57 0.0012 32.3 12.6 99 238-336 73-197 (283)
290 cd04734 OYE_like_3_FMN Old yel 76.0 9.4 0.0002 38.0 7.3 97 178-277 208-324 (343)
291 COG2070 Dioxygenases related t 75.6 8.4 0.00018 38.7 6.8 95 159-273 115-218 (336)
292 PRK13586 1-(5-phosphoribosyl)- 75.6 14 0.00029 35.2 7.9 89 198-290 31-122 (232)
293 TIGR01361 DAHP_synth_Bsub phos 75.5 23 0.00049 34.3 9.5 147 175-335 24-191 (260)
294 cd08567 GDPD_SpGDE_like Glycer 75.4 48 0.001 30.7 11.4 129 176-317 126-260 (263)
295 cd01948 EAL EAL domain. This d 75.4 15 0.00032 32.7 7.8 108 178-312 117-226 (240)
296 cd04728 ThiG Thiazole synthase 74.8 21 0.00045 35.0 9.0 98 213-318 95-206 (248)
297 PLN02617 imidazole glycerol ph 74.8 16 0.00036 39.1 9.1 94 195-290 436-535 (538)
298 PRK07896 nicotinate-nucleotide 74.2 8.2 0.00018 38.3 6.3 140 158-317 123-275 (289)
299 cd08606 GDPD_YPL110cp_fungi Gl 74.2 69 0.0015 30.5 12.4 131 176-316 121-275 (286)
300 PRK08091 ribulose-phosphate 3- 74.0 34 0.00074 32.8 10.2 113 197-315 78-206 (228)
301 PF01680 SOR_SNZ: SOR/SNZ fami 74.0 2.9 6.3E-05 39.5 2.9 121 178-318 16-147 (208)
302 COG0826 Collagenase and relate 73.9 9.1 0.0002 38.7 6.6 65 251-316 16-99 (347)
303 PLN03033 2-dehydro-3-deoxyphos 73.9 4.5 9.8E-05 40.3 4.4 51 272-324 70-121 (290)
304 TIGR02313 HpaI-NOT-DapA 2,4-di 73.7 7.6 0.00016 37.8 5.9 61 175-245 68-133 (294)
305 PF03060 NMO: Nitronate monoox 73.6 5.8 0.00013 39.2 5.1 94 159-272 124-223 (330)
306 TIGR01769 GGGP geranylgeranylg 73.5 12 0.00026 35.3 7.0 65 201-266 138-203 (205)
307 PF01791 DeoC: DeoC/LacD famil 73.5 2.1 4.6E-05 39.9 1.9 67 251-318 79-168 (236)
308 PRK14040 oxaloacetate decarbox 73.4 24 0.00051 38.3 10.0 135 198-338 28-194 (593)
309 PRK07714 hypothetical protein; 73.3 27 0.00058 28.9 8.2 84 228-320 8-91 (100)
310 PRK00278 trpC indole-3-glycero 73.0 10 0.00022 36.5 6.5 82 198-280 169-252 (260)
311 cd08605 GDPD_GDE5_like_1_plant 73.0 19 0.00041 34.4 8.3 88 226-316 179-280 (282)
312 TIGR00683 nanA N-acetylneurami 72.9 13 0.00028 36.1 7.2 60 175-243 69-132 (290)
313 PRK08072 nicotinate-nucleotide 72.9 15 0.00033 36.0 7.8 40 289-336 189-228 (277)
314 PF01180 DHO_dh: Dihydroorotat 72.7 3.3 7.2E-05 39.9 3.1 132 177-316 97-273 (295)
315 PRK06106 nicotinate-nucleotide 72.6 8.7 0.00019 38.0 6.0 32 289-321 195-226 (281)
316 PRK08195 4-hyroxy-2-oxovalerat 72.6 42 0.0009 33.7 10.9 134 198-336 26-181 (337)
317 cd07937 DRE_TIM_PC_TC_5S Pyruv 72.3 49 0.0011 31.9 11.0 134 198-336 22-186 (275)
318 PF01207 Dus: Dihydrouridine s 72.3 5.3 0.00011 39.2 4.4 77 198-275 139-220 (309)
319 cd08573 GDPD_GDE1 Glycerophosp 72.0 21 0.00045 34.0 8.3 49 258-311 202-252 (258)
320 cd02808 GltS_FMN Glutamate syn 71.9 20 0.00044 36.5 8.7 143 179-323 147-321 (392)
321 PRK07283 hypothetical protein; 71.8 14 0.0003 30.6 6.2 72 247-320 19-90 (98)
322 cd00951 KDGDH 5-dehydro-4-deox 71.5 7.9 0.00017 37.4 5.4 61 175-246 68-132 (289)
323 COG0157 NadC Nicotinate-nucleo 71.5 2.5 5.5E-05 41.8 2.0 46 276-322 173-221 (280)
324 TIGR01859 fruc_bis_ald_ fructo 71.4 15 0.00033 35.9 7.4 74 197-271 153-233 (282)
325 cd08613 GDPD_GDE4_like_1 Glyce 71.2 41 0.00088 33.8 10.4 141 161-318 143-304 (309)
326 PRK06978 nicotinate-nucleotide 71.2 6 0.00013 39.4 4.5 45 279-324 194-240 (294)
327 PRK04175 rpl7ae 50S ribosomal 71.1 14 0.00031 31.9 6.4 73 247-320 31-105 (122)
328 cd01572 QPRTase Quinolinate ph 71.1 15 0.00032 35.7 7.2 31 288-319 182-212 (268)
329 cd08608 GDPD_GDE2 Glycerophosp 71.0 45 0.00097 33.9 10.8 122 177-316 128-251 (351)
330 PF00478 IMPDH: IMP dehydrogen 71.0 17 0.00036 37.1 7.7 130 175-316 95-240 (352)
331 TIGR02320 PEP_mutase phosphoen 70.9 9.4 0.0002 37.6 5.8 69 198-271 170-243 (285)
332 PRK08745 ribulose-phosphate 3- 70.7 49 0.0011 31.5 10.4 112 198-315 73-198 (223)
333 cd08572 GDPD_GDE5_like Glycero 70.5 59 0.0013 31.6 11.2 128 177-313 137-288 (293)
334 PRK07695 transcriptional regul 70.4 21 0.00047 32.3 7.7 71 202-274 107-183 (201)
335 PRK06543 nicotinate-nucleotide 70.4 6.8 0.00015 38.7 4.7 34 289-323 194-227 (281)
336 PRK11197 lldD L-lactate dehydr 70.3 9.5 0.00021 39.2 5.9 70 201-270 257-331 (381)
337 TIGR02320 PEP_mutase phosphoen 70.1 4.2 9.1E-05 40.0 3.2 128 177-317 79-241 (285)
338 TIGR03677 rpl7ae 50S ribosomal 70.0 16 0.00034 31.3 6.3 73 248-321 28-102 (117)
339 PRK07428 nicotinate-nucleotide 69.9 12 0.00026 37.0 6.4 138 158-316 119-271 (288)
340 cd06826 PLPDE_III_AR2 Type III 69.8 72 0.0016 31.9 11.9 105 197-315 39-160 (365)
341 cd06565 GH20_GcnA-like Glycosy 69.7 11 0.00024 36.9 6.0 88 178-307 3-92 (301)
342 PRK12290 thiE thiamine-phospha 69.5 7.5 0.00016 40.8 5.0 105 200-318 220-329 (437)
343 cd00954 NAL N-Acetylneuraminic 69.5 12 0.00026 36.1 6.1 60 175-244 69-133 (288)
344 PLN02826 dihydroorotate dehydr 69.2 48 0.001 34.4 10.7 119 198-317 202-371 (409)
345 cd04733 OYE_like_2_FMN Old yel 69.1 12 0.00026 36.9 6.2 77 199-276 238-330 (338)
346 TIGR00078 nadC nicotinate-nucl 69.0 21 0.00045 34.7 7.7 39 281-320 168-209 (265)
347 PRK05692 hydroxymethylglutaryl 68.9 33 0.00071 33.6 9.1 131 198-336 27-192 (287)
348 TIGR00674 dapA dihydrodipicoli 68.8 12 0.00026 35.9 6.0 60 175-244 66-129 (285)
349 PRK06806 fructose-bisphosphate 68.5 20 0.00042 35.3 7.4 77 196-273 152-235 (281)
350 PRK08385 nicotinate-nucleotide 68.5 4.6 0.0001 39.7 3.1 32 289-321 183-214 (278)
351 PRK08005 epimerase; Validated 68.4 22 0.00047 33.7 7.4 116 186-306 3-127 (210)
352 PRK00077 eno enolase; Provisio 68.3 31 0.00067 35.6 9.2 124 197-326 261-391 (425)
353 PRK13210 putative L-xylulose 5 67.6 90 0.002 29.0 11.4 42 275-316 133-180 (284)
354 KOG1606 Stationary phase-induc 67.6 8.3 0.00018 37.6 4.5 112 201-318 32-154 (296)
355 PRK06801 hypothetical protein; 67.5 1.3E+02 0.0029 29.7 13.0 99 238-336 73-201 (286)
356 PF01729 QRPTase_C: Quinolinat 67.5 4 8.7E-05 37.2 2.3 30 291-321 83-112 (169)
357 PRK04169 geranylgeranylglycery 67.5 18 0.0004 34.7 6.8 77 196-276 136-221 (232)
358 PLN02979 glycolate oxidase 67.4 14 0.0003 38.0 6.3 69 201-269 235-308 (366)
359 PF03740 PdxJ: Pyridoxal phosp 67.1 58 0.0013 31.8 10.2 117 197-316 22-152 (239)
360 PRK01018 50S ribosomal protein 67.1 23 0.0005 29.4 6.6 74 250-323 20-94 (99)
361 PRK08385 nicotinate-nucleotide 67.0 15 0.00032 36.3 6.2 143 158-317 105-260 (278)
362 TIGR03249 KdgD 5-dehydro-4-deo 67.0 11 0.00025 36.4 5.5 58 175-243 73-134 (296)
363 cd07948 DRE_TIM_HCS Saccharomy 66.9 51 0.0011 31.9 9.8 132 198-336 23-178 (262)
364 cd04723 HisA_HisF Phosphoribos 66.8 23 0.00049 33.3 7.3 77 195-273 144-223 (233)
365 cd02931 ER_like_FMN Enoate red 66.8 19 0.0004 36.6 7.1 78 199-277 254-344 (382)
366 PRK08227 autoinducer 2 aldolas 66.7 6.7 0.00015 38.4 3.8 63 254-317 100-179 (264)
367 cd02932 OYE_YqiM_FMN Old yello 66.6 34 0.00073 33.7 8.7 44 201-245 158-227 (336)
368 PRK06806 fructose-bisphosphate 66.6 1.4E+02 0.003 29.4 14.2 99 238-336 73-198 (281)
369 TIGR00381 cdhD CO dehydrogenas 66.5 39 0.00085 35.1 9.4 126 175-302 110-255 (389)
370 PRK07226 fructose-bisphosphate 66.5 19 0.00041 34.5 6.8 79 196-281 156-244 (267)
371 cd08601 GDPD_SaGlpQ_like Glyce 66.4 1.1E+02 0.0025 28.5 12.2 129 176-316 111-246 (256)
372 PRK15447 putative protease; Pr 66.3 14 0.00031 36.1 6.1 46 259-306 59-105 (301)
373 cd04741 DHOD_1A_like Dihydroor 66.2 59 0.0013 31.7 10.2 119 198-320 104-276 (294)
374 cd04747 OYE_like_5_FMN Old yel 66.2 20 0.00042 36.4 7.1 78 199-277 237-337 (361)
375 TIGR00126 deoC deoxyribose-pho 66.1 8.1 0.00017 36.5 4.1 112 204-317 77-205 (211)
376 COG0269 SgbH 3-hexulose-6-phos 66.1 32 0.00068 33.2 8.0 106 228-335 45-162 (217)
377 TIGR01060 eno phosphopyruvate 65.5 25 0.00053 36.3 7.8 123 197-326 262-392 (425)
378 PLN02493 probable peroxisomal 65.4 16 0.00034 37.5 6.3 68 201-268 236-308 (367)
379 COG0157 NadC Nicotinate-nucleo 65.4 15 0.00032 36.6 5.8 137 158-316 111-262 (280)
380 PRK13561 putative diguanylate 65.0 30 0.00065 36.5 8.5 108 178-312 519-628 (651)
381 COG0106 HisA Phosphoribosylfor 64.7 31 0.00067 33.7 7.8 140 197-340 31-193 (241)
382 TIGR00492 alr alanine racemase 64.5 51 0.0011 32.6 9.6 104 199-316 42-160 (367)
383 PRK10558 alpha-dehydro-beta-de 64.2 21 0.00045 34.5 6.6 80 201-284 31-113 (256)
384 TIGR02311 HpaI 2,4-dihydroxyhe 64.1 20 0.00043 34.3 6.4 70 247-317 19-92 (249)
385 cd08610 GDPD_GDE6 Glycerophosp 64.1 85 0.0018 31.3 11.0 82 227-317 192-274 (316)
386 PLN02898 HMP-P kinase/thiamin- 63.9 21 0.00045 37.3 7.0 102 198-315 308-416 (502)
387 PRK13397 3-deoxy-7-phosphohept 63.9 73 0.0016 31.1 10.2 100 218-324 55-164 (250)
388 PRK05581 ribulose-phosphate 3- 63.5 14 0.0003 33.4 5.0 82 199-282 121-212 (220)
389 cd06812 PLPDE_III_DSD_D-TA_lik 63.4 87 0.0019 30.9 11.0 107 200-316 44-165 (374)
390 PF02662 FlpD: Methyl-viologen 63.2 7.1 0.00015 33.7 2.9 42 249-290 40-92 (124)
391 cd00959 DeoC 2-deoxyribose-5-p 63.2 19 0.00041 33.0 5.9 64 252-316 73-151 (203)
392 PRK02506 dihydroorotate dehydr 63.0 72 0.0016 31.4 10.2 131 178-320 94-274 (310)
393 PRK05583 ribosomal protein L7A 62.7 47 0.001 28.0 7.7 72 248-320 19-90 (104)
394 PRK03512 thiamine-phosphate py 62.7 28 0.00061 32.5 7.0 99 202-318 24-131 (211)
395 cd00377 ICL_PEPM Members of th 62.6 33 0.00072 32.6 7.6 33 178-216 71-103 (243)
396 PRK06559 nicotinate-nucleotide 62.5 10 0.00023 37.7 4.3 35 288-323 197-231 (290)
397 PRK12331 oxaloacetate decarbox 62.4 67 0.0014 33.7 10.3 135 198-338 27-193 (448)
398 cd00408 DHDPS-like Dihydrodipi 62.1 11 0.00024 35.7 4.3 60 175-244 65-128 (281)
399 PRK11815 tRNA-dihydrouridine s 61.9 41 0.00089 33.5 8.4 127 178-315 66-232 (333)
400 PRK05096 guanosine 5'-monophos 61.7 51 0.0011 33.9 9.0 117 198-316 109-242 (346)
401 COG0167 PyrD Dihydroorotate de 61.7 35 0.00076 34.3 7.8 115 198-315 110-269 (310)
402 COG5564 Predicted TIM-barrel e 61.4 75 0.0016 31.3 9.7 69 247-316 100-183 (276)
403 PTZ00106 60S ribosomal protein 61.3 34 0.00073 29.2 6.6 76 247-322 26-102 (108)
404 PRK10605 N-ethylmaleimide redu 61.3 19 0.00041 36.3 6.0 76 199-277 251-330 (362)
405 PRK09989 hypothetical protein; 61.3 1.1E+02 0.0024 28.5 10.7 107 196-315 39-175 (258)
406 PLN02334 ribulose-phosphate 3- 60.9 21 0.00045 33.3 5.8 81 198-279 126-213 (229)
407 cd08609 GDPD_GDE3 Glycerophosp 60.8 90 0.0019 31.1 10.5 122 176-317 152-274 (315)
408 PRK06348 aspartate aminotransf 60.6 15 0.00032 36.2 5.0 88 202-292 105-199 (384)
409 cd03321 mandelate_racemase Man 60.6 44 0.00095 33.2 8.3 128 162-305 174-303 (355)
410 PRK08185 hypothetical protein; 60.6 1.1E+02 0.0023 30.4 10.9 99 238-336 67-196 (283)
411 PRK04302 triosephosphate isome 60.5 30 0.00066 32.1 6.8 76 202-280 126-214 (223)
412 PF09370 TIM-br_sig_trns: TIM- 60.5 12 0.00026 37.0 4.3 145 201-348 26-217 (268)
413 cd06825 PLPDE_III_VanT Type II 60.4 1.1E+02 0.0023 30.8 11.1 103 197-315 39-152 (368)
414 TIGR01919 hisA-trpF 1-(5-phosp 60.3 84 0.0018 30.0 9.9 87 197-288 31-121 (243)
415 PRK10415 tRNA-dihydrouridine s 60.3 1E+02 0.0022 30.6 10.7 118 198-316 75-224 (321)
416 PRK12595 bifunctional 3-deoxy- 60.2 47 0.001 33.8 8.6 82 203-286 245-352 (360)
417 PRK10550 tRNA-dihydrouridine s 60.1 93 0.002 30.9 10.4 114 201-315 79-223 (312)
418 PRK05742 nicotinate-nucleotide 59.9 15 0.00032 36.1 4.9 136 158-317 113-262 (277)
419 cd01573 modD_like ModD; Quinol 59.6 89 0.0019 30.5 10.1 139 158-315 103-257 (272)
420 cd07944 DRE_TIM_HOA_like 4-hyd 59.5 1.4E+02 0.0031 28.7 11.4 134 199-337 22-176 (266)
421 TIGR02090 LEU1_arch isopropylm 59.4 95 0.0021 31.3 10.6 132 198-338 23-180 (363)
422 PRK13398 3-deoxy-7-phosphohept 59.4 57 0.0012 31.8 8.7 101 199-306 43-155 (266)
423 PRK09016 quinolinate phosphori 59.2 20 0.00043 35.8 5.6 137 158-317 132-281 (296)
424 PF02581 TMP-TENI: Thiamine mo 59.2 9 0.0002 34.3 3.0 105 199-318 14-124 (180)
425 cd03313 enolase Enolase: Enola 59.2 24 0.00052 36.2 6.4 122 196-325 260-390 (408)
426 PRK03620 5-dehydro-4-deoxygluc 59.0 19 0.00042 35.1 5.4 61 175-246 75-139 (303)
427 cd00019 AP2Ec AP endonuclease 58.8 1.2E+02 0.0027 28.4 10.7 66 251-316 88-174 (279)
428 cd02742 GH20_hexosaminidase Be 58.6 12 0.00027 36.4 4.1 37 271-307 68-104 (303)
429 PF00793 DAHP_synth_1: DAHP sy 58.4 17 0.00036 35.6 4.8 49 274-324 74-122 (270)
430 cd06828 PLPDE_III_DapDC Type I 58.2 98 0.0021 30.3 10.2 123 201-336 42-199 (373)
431 cd08607 GDPD_GDE5 Glycerophosp 58.0 1.7E+02 0.0038 27.8 12.9 88 226-316 184-288 (290)
432 PRK05742 nicotinate-nucleotide 58.0 12 0.00025 36.9 3.8 30 288-318 189-218 (277)
433 PRK08999 hypothetical protein; 57.9 23 0.0005 34.0 5.8 103 200-318 147-255 (312)
434 COG2200 Rtn c-di-GMP phosphodi 57.9 17 0.00038 34.5 4.8 107 178-312 121-230 (256)
435 PF00834 Ribul_P_3_epim: Ribul 57.6 31 0.00066 32.3 6.3 116 197-320 12-138 (201)
436 PRK03170 dihydrodipicolinate s 56.9 22 0.00049 34.1 5.4 48 197-246 83-134 (292)
437 PRK07315 fructose-bisphosphate 56.8 1.6E+02 0.0036 29.1 11.5 96 239-336 77-199 (293)
438 cd02922 FCB2_FMN Flavocytochro 56.8 54 0.0012 33.1 8.3 112 200-319 84-244 (344)
439 PRK06207 aspartate aminotransf 56.7 14 0.0003 36.9 4.1 48 245-292 162-215 (405)
440 KOG2335 tRNA-dihydrouridine sy 55.7 32 0.00068 35.4 6.4 94 197-291 155-270 (358)
441 PF01070 FMN_dh: FMN-dependent 55.6 13 0.00029 37.5 3.8 73 197-270 234-311 (356)
442 cd00953 KDG_aldolase KDG (2-ke 55.2 17 0.00036 35.1 4.2 43 197-243 78-125 (279)
443 PRK06559 nicotinate-nucleotide 55.1 25 0.00054 35.0 5.5 138 158-317 120-270 (290)
444 PRK12376 putative translaldola 54.9 41 0.00088 32.5 6.8 75 197-272 121-203 (236)
445 PRK06801 hypothetical protein; 54.8 50 0.0011 32.7 7.5 77 196-273 155-238 (286)
446 PRK12330 oxaloacetate decarbox 54.7 1E+02 0.0023 32.9 10.3 131 198-338 28-194 (499)
447 COG1794 RacX Aspartate racemas 54.6 53 0.0011 32.0 7.4 94 200-305 65-160 (230)
448 PRK07777 aminotransferase; Val 54.5 12 0.00025 36.8 3.2 80 215-294 111-198 (387)
449 PRK12858 tagatose 1,6-diphosph 54.0 8.9 0.00019 38.7 2.3 50 246-295 104-163 (340)
450 TIGR01919 hisA-trpF 1-(5-phosp 53.9 55 0.0012 31.3 7.5 112 160-274 109-231 (243)
451 PF04131 NanE: Putative N-acet 53.9 19 0.00042 34.0 4.3 74 201-276 103-181 (192)
452 cd00956 Transaldolase_FSA Tran 53.8 32 0.00069 32.2 5.8 76 196-273 109-190 (211)
453 cd00956 Transaldolase_FSA Tran 53.7 42 0.00091 31.4 6.5 125 178-318 53-187 (211)
454 TIGR00693 thiE thiamine-phosph 53.6 67 0.0014 28.6 7.6 80 198-279 105-191 (196)
455 PRK10060 RNase II stability mo 53.4 48 0.001 35.7 7.7 38 275-313 598-636 (663)
456 cd01568 QPRTase_NadC Quinolina 53.3 36 0.00078 33.0 6.2 135 159-315 105-254 (269)
457 PF00478 IMPDH: IMP dehydrogen 53.2 11 0.00023 38.5 2.7 85 182-267 142-239 (352)
458 PRK08185 hypothetical protein; 53.0 52 0.0011 32.6 7.3 88 176-267 122-227 (283)
459 PF01791 DeoC: DeoC/LacD famil 53.0 22 0.00048 33.1 4.6 132 176-315 56-227 (236)
460 cd06556 ICL_KPHMT Members of t 53.0 84 0.0018 30.2 8.6 102 164-282 64-188 (240)
461 PRK11858 aksA trans-homoaconit 52.6 1E+02 0.0023 31.2 9.6 133 198-336 27-182 (378)
462 PLN02417 dihydrodipicolinate s 52.3 33 0.00071 33.1 5.8 53 175-236 69-125 (280)
463 TIGR00734 hisAF_rel hisA/hisF 52.1 25 0.00054 33.0 4.8 89 179-272 125-217 (221)
464 cd07941 DRE_TIM_LeuA3 Desulfob 51.9 1.7E+02 0.0036 28.2 10.5 134 198-337 21-189 (273)
465 TIGR02631 xylA_Arthro xylose i 51.5 2.2E+02 0.0049 29.1 11.8 45 252-296 119-181 (382)
466 cd06368 PBP1_iGluR_non_NMDA_li 51.5 35 0.00077 31.9 5.7 84 203-290 119-206 (324)
467 TIGR01928 menC_lowGC/arch o-su 51.4 45 0.00098 32.7 6.7 97 202-303 191-289 (324)
468 PF03437 BtpA: BtpA family; I 51.4 1.1E+02 0.0023 30.0 9.1 86 176-267 140-226 (254)
469 PLN02746 hydroxymethylglutaryl 51.3 1.8E+02 0.0039 29.6 11.0 132 199-338 70-236 (347)
470 PRK11320 prpB 2-methylisocitra 51.2 32 0.0007 34.1 5.6 68 198-271 167-237 (292)
471 PTZ00081 enolase; Provisional 50.9 96 0.0021 32.5 9.2 124 196-326 280-411 (439)
472 TIGR03537 DapC succinyldiamino 50.6 23 0.00049 34.3 4.4 79 215-293 89-174 (350)
473 PRK11572 copper homeostasis pr 50.6 66 0.0014 31.5 7.5 104 203-311 14-143 (248)
474 cd00429 RPE Ribulose-5-phospha 50.5 15 0.00033 32.6 3.0 76 200-278 118-204 (211)
475 cd03317 NAAAR N-acylamino acid 50.4 55 0.0012 32.2 7.1 86 214-301 205-292 (354)
476 TIGR01163 rpe ribulose-phospha 50.2 16 0.00034 32.7 3.0 78 199-279 116-204 (210)
477 COG2513 PrpB PEP phosphonomuta 50.2 24 0.00052 35.3 4.5 67 198-270 167-236 (289)
478 PRK05265 pyridoxine 5'-phospha 50.2 2.4E+02 0.0052 27.6 11.2 118 196-317 23-155 (239)
479 cd08583 PI-PLCc_GDPD_SF_unchar 50.0 1E+02 0.0022 28.6 8.4 56 255-315 176-232 (237)
480 PRK07315 fructose-bisphosphate 49.9 71 0.0015 31.6 7.7 94 177-272 131-236 (293)
481 cd03174 DRE_TIM_metallolyase D 49.6 1.1E+02 0.0023 28.3 8.6 102 200-302 77-202 (265)
482 cd07376 PLPDE_III_DSD_D-TA_lik 49.6 2.1E+02 0.0045 27.9 10.9 110 199-317 29-154 (345)
483 KOG0538 Glycolate oxidase [Ene 49.4 50 0.0011 33.8 6.6 89 226-317 211-308 (363)
484 cd06819 PLPDE_III_LS_D-TA Type 49.4 2E+02 0.0044 28.1 10.9 102 200-315 45-165 (358)
485 PF00728 Glyco_hydro_20: Glyco 49.3 9.3 0.0002 37.0 1.5 36 271-306 69-104 (351)
486 PRK02506 dihydroorotate dehydr 49.1 1.1E+02 0.0025 30.0 9.1 64 227-291 228-299 (310)
487 cd06811 PLPDE_III_yhfX_like Ty 49.1 1.8E+02 0.0038 29.5 10.6 104 201-317 68-192 (382)
488 PRK08255 salicylyl-CoA 5-hydro 49.0 57 0.0012 36.0 7.6 90 199-291 640-738 (765)
489 PRK14041 oxaloacetate decarbox 48.8 1.3E+02 0.0029 31.8 9.9 136 198-338 26-192 (467)
490 PRK06552 keto-hydroxyglutarate 48.8 97 0.0021 29.2 8.1 107 197-318 76-185 (213)
491 PRK09776 putative diguanylate 48.7 48 0.001 36.7 7.0 37 276-313 1032-1069(1092)
492 cd00950 DHDPS Dihydrodipicolin 48.7 35 0.00077 32.5 5.3 62 175-246 68-133 (284)
493 PRK03620 5-dehydro-4-deoxygluc 48.7 80 0.0017 30.8 7.8 133 197-336 25-179 (303)
494 PRK09016 quinolinate phosphori 48.7 26 0.00057 35.0 4.6 32 288-320 208-239 (296)
495 cd00951 KDGDH 5-dehydro-4-deox 48.2 1.2E+02 0.0027 29.2 9.0 129 201-336 25-172 (289)
496 PRK12737 gatY tagatose-bisphos 48.1 75 0.0016 31.4 7.6 89 177-266 129-230 (284)
497 TIGR02317 prpB methylisocitrat 48.0 37 0.0008 33.6 5.4 69 198-272 162-233 (285)
498 PRK07896 nicotinate-nucleotide 47.9 14 0.00031 36.6 2.6 32 289-321 200-231 (289)
499 COG0352 ThiE Thiamine monophos 47.8 65 0.0014 30.6 6.9 104 200-318 24-133 (211)
500 PRK12581 oxaloacetate decarbox 47.7 1.4E+02 0.003 31.8 9.8 135 198-338 36-202 (468)
No 1
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=100.00 E-value=1.5e-94 Score=704.89 Aligned_cols=293 Identities=82% Similarity=1.285 Sum_probs=274.2
Q ss_pred CCCcceeeccchhhhhHhhhhHhhhcchhhhhhhcCCcEEEecCCCCCCCceecceeeeecCCCCCcccHHHHHHHHHHH
Q 018446 57 KDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDV 136 (355)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irrr~~~~~~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~ 136 (355)
+++++.+ +++.|++++++||+||++|+++++|||+|||||||+++.+.+++++|+++++.++|+|||++|+|+|+.
T Consensus 3 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~irr~~~~~~~~~~~~~~~~~~~~~~~~~~~iLe~Iv~~k~~ 78 (338)
T PLN02460 3 KSGSALY----DDMFNALEVKEWEVGMSQNEIAASQGIRIRRRPPTGPPLHYVGPFQFRLQNEGNTPRNILEEIVWYKDV 78 (338)
T ss_pred ccchhhh----hhhcchhHHHHhhccccchhccccCCceEecCCCCCcccccccccccccccccccHhHHHHHHHHHHHH
Confidence 4455554 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE
Q 018446 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI 216 (355)
Q Consensus 137 EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV 216 (355)
||++++.+.|+.+|++.+...|++++|.++|++.....++++|||||||+|||+|+|+++|||+++|+.|+++||+||||
T Consensus 79 eV~~~k~~~~l~~l~~~~~~~~~~r~f~~aL~~~~~~~g~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISV 158 (338)
T PLN02460 79 EVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRTGQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSV 158 (338)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCCCcCHHHHHHhhccccCCcceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999888889999999998632112458999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC
Q 018446 217 LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296 (355)
Q Consensus 217 LTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH 296 (355)
|||++||+||++||..||++++++||||||||||||||||||.+||||||||+++|++++|++|+++|++|||++|||||
T Consensus 159 LTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH 238 (338)
T PLN02460 159 LTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVH 238 (338)
T ss_pred ecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 99999999999999999985589999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccccccccCceEEeccc
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGPF 353 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~~ 353 (355)
|++||++|+.+.|++|||||||||+||+||+++|.+|++..++.++++.++++|+|-
T Consensus 239 ~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsES 295 (338)
T PLN02460 239 DEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGES 295 (338)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECC
Confidence 999999999965899999999999999999999999999767778876788899874
No 2
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-73 Score=535.49 Aligned_cols=207 Identities=54% Similarity=0.827 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHH
Q 018446 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206 (355)
Q Consensus 127 Le~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y 206 (355)
|++|+++|+.||++++...|+.+++......+ ++|.+||+.. .++++|||||||+|||+|.|+.+|||+++|+.|
T Consensus 1 L~~I~~~k~~ev~~~~~~~~l~~~~~~~~~~~--r~f~~AL~~~---~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Y 75 (254)
T COG0134 1 LEKILADKKEEVAARKAKLPLAELRAKIRSAD--RDFYAALKEA---SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAY 75 (254)
T ss_pred ChHHHHHHHHHHHhhhcccchHHHhhhhhhcc--ccHHHHHHhc---CCCceEEEEeecCCCCCCcccccCCHHHHHHHH
Confidence 68999999999999999999999999887665 9999999986 267899999999999999999999999999999
Q ss_pred HHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH
Q 018446 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286 (355)
Q Consensus 207 e~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~ 286 (355)
+++||+|||||||++||+||++||+.+|++ +++|||||||||||||||+||.+||||||||+++|++++|++|+++|++
T Consensus 76 e~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~-v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~ 154 (254)
T COG0134 76 EEGGAAAISVLTDPKYFQGSFEDLRAVRAA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHE 154 (254)
T ss_pred HHhCCeEEEEecCccccCCCHHHHHHHHHh-cCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccccc
Q 018446 287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGE 340 (355)
Q Consensus 287 LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~ 340 (355)
|||++||||||++||++|+++ |++|||||||||+||+||+++|.+|++.+|.+
T Consensus 155 LGm~~LVEVh~~eEl~rAl~~-ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~ 207 (254)
T COG0134 155 LGMEVLVEVHNEEELERALKL-GAKIIGINNRDLTTLEVDLETTEKLAPLIPKD 207 (254)
T ss_pred cCCeeEEEECCHHHHHHHHhC-CCCEEEEeCCCcchheecHHHHHHHHhhCCCC
Confidence 999999999999999999997 99999999999999999999999998876654
No 3
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-73 Score=529.09 Aligned_cols=233 Identities=56% Similarity=0.888 Sum_probs=219.9
Q ss_pred CCceecceeeeecCCCCCcccHHHHHHHHHHHHHHHHhccCC---HHHHHHhhhc--CCCCccHHHHHHhhhhcCCCceE
Q 018446 105 PLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRP---LSMLKNALDN--APPARDFIGALMAANQRTGLPAL 179 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~EV~~~k~~~p---l~~L~~~l~~--~pp~rdF~~aL~~~~~~~g~~aV 179 (355)
|..++|+.++++.+ |++|||+|.|+|..+|+++++ .| +..|++.+.. +||.+||+.+|+.++ .+|++
T Consensus 2 ~~n~~sp~e~rl~n----p~sILe~I~~~r~idvae~k~-~Pg~t~~dLq~~ld~~~aPP~~dF~~~Lr~sh---k~p~l 73 (289)
T KOG4201|consen 2 PENYSSPSETRLRN----PRSILEEIYARRDIDVAEMKE-KPGFTLQDLQKALDLGLAPPLQDFYGALRSSH---KRPGL 73 (289)
T ss_pred CCCCCCchhhhccC----HHHHHHHHHHHhhhhHHHhhc-CCCCcHHHHHHHHhccCCCchHHHHHHHHHhc---ccchH
Confidence 56788999998877 899999999999999999988 67 9999999887 899999999999986 46899
Q ss_pred EeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHH-hcCCCCC---eeccccccCHHHHH
Q 018446 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR-SAGVKCP---LLCKEFIVDAWQIY 255 (355)
Q Consensus 180 IAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR-~a~v~lP---VLrKDFIIdpyQI~ 255 (355)
||||||||||+|+|+.+++|+++|++|+++||+|||||||++||+||++||..+| .+++.+| +||||||+||||||
T Consensus 74 iAEVKrASPSkG~ik~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~ 153 (289)
T KOG4201|consen 74 IAEVKRASPSKGIIKLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIY 153 (289)
T ss_pred HHHHhhcCCCCCccccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 4568899 99999999999999
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhc
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~ 335 (355)
+||..|||+||||+++|++.+|++|+++|+.|||++|||||+++||+||+.+ |+++||||||||+||+||+++|.+|++
T Consensus 154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVDlstTskL~E 232 (289)
T KOG4201|consen 154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVDLSTTSKLLE 232 (289)
T ss_pred HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeechhhHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred cccccccccCceEEecc
Q 018446 336 GERGEIIRQKNIIVSGP 352 (355)
Q Consensus 336 ~~~~~~l~~~~i~~V~~ 352 (355)
.+ | +++++||+
T Consensus 233 ~i-----~-kDvilva~ 243 (289)
T KOG4201|consen 233 GI-----P-KDVILVAL 243 (289)
T ss_pred hC-----c-cceEEEec
Confidence 74 4 45577776
No 4
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=100.00 E-value=2.8e-70 Score=517.23 Aligned_cols=207 Identities=53% Similarity=0.816 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHH
Q 018446 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206 (355)
Q Consensus 127 Le~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y 206 (355)
|++|+|+|++||++++++.|+++|++.....+++++|.++|++. .++++|||||||+|||+|.|++++||.++|+.|
T Consensus 1 L~~Iv~~k~~ev~~~k~~~~~~~l~~~~~~~~~~~~f~~aL~~~---~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y 77 (254)
T PF00218_consen 1 LDEIVEHKREEVEERKKRVPLEELKKRIEAAPPPRSFKEALRQN---EGRISVIAEIKRASPSKGDIREDFDPAEIAKAY 77 (254)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHCSS-TTHHHHHHHSH---TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHhcC---CCCCeEEEEeecCCCCCCccCccCCHHHHHHHH
Confidence 79999999999999999999999999998889999999999885 267899999999999999999999999999999
Q ss_pred HHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH
Q 018446 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286 (355)
Q Consensus 207 e~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~ 286 (355)
+++||+|||||||++||+||++||..||++ +++|||||||||||||||+||.+||||||||+++|++++|++|+++|++
T Consensus 78 ~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~-~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~ 156 (254)
T PF00218_consen 78 EEAGAAAISVLTEPKFFGGSLEDLRAVRKA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHS 156 (254)
T ss_dssp HHTT-SEEEEE--SCCCHHHHHHHHHHHHH-SSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCCCCCCHHHHHHHHHH-hCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccc
Q 018446 287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGER 338 (355)
Q Consensus 287 LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~ 338 (355)
|||++||||||++|+++|+.+ |++|||||||||+||++|+++|.+|++.+|
T Consensus 157 lGle~lVEVh~~~El~~al~~-~a~iiGINnRdL~tf~vd~~~~~~l~~~ip 207 (254)
T PF00218_consen 157 LGLEALVEVHNEEELERALEA-GADIIGINNRDLKTFEVDLNRTEELAPLIP 207 (254)
T ss_dssp TT-EEEEEESSHHHHHHHHHT-T-SEEEEESBCTTTCCBHTHHHHHHHCHSH
T ss_pred cCCCeEEEECCHHHHHHHHHc-CCCEEEEeCccccCcccChHHHHHHHhhCc
Confidence 999999999999999999997 999999999999999999999999987655
No 5
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=100.00 E-value=2.5e-65 Score=482.17 Aligned_cols=200 Identities=40% Similarity=0.598 Sum_probs=188.3
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (355)
Q Consensus 124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA 203 (355)
.+||++|+++|++||++++...|+..+ +++|..+|.+ ++++|||||||+|||+|.|++++||+++|
T Consensus 2 ~~iL~~I~~~k~~~v~~~~~~~~~~~~---------~~~~~~~l~~-----~~~~vIaEiKr~SPs~G~i~~~~d~~~~A 67 (247)
T PRK13957 2 HRVLREIIETKQNEIEKISRWDPLPDR---------GLPLRDSLKS-----RSFSIIAECKRKSPSAGELRADYHPVQIA 67 (247)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCChhhh---------hhhHHHHHhC-----CCCeEEEEEecCCCCCCCcCCCCCHHHHH
Confidence 379999999999999988888887753 3468888864 34899999999999999999999999999
Q ss_pred HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (355)
Q Consensus 204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~ 283 (355)
+.|+++||+|||||||++||+||++||..+|++ +++||||||||+|||||+||+.+||||||||+++|++++|++|+++
T Consensus 68 ~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 146 (247)
T PRK13957 68 KTYETLGASAISVLTDQSYFGGSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKH 146 (247)
T ss_pred HHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHH
Confidence 999999999999999999999999999999996 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG 339 (355)
Q Consensus 284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~ 339 (355)
|++|||++||||||++|+++|+++ |+++||||||||+||++|+++|++|++.+|.
T Consensus 147 a~~lGle~LVEVh~~~El~~a~~~-ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~ 201 (247)
T PRK13957 147 ASSLGMDVLVEVHTEDEAKLALDC-GAEIIGINTRDLDTFQIHQNLVEEVAAFLPP 201 (247)
T ss_pred HHHcCCceEEEECCHHHHHHHHhC-CCCEEEEeCCCCccceECHHHHHHHHhhCCC
Confidence 999999999999999999999997 9999999999999999999999999887653
No 6
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=100.00 E-value=5.5e-65 Score=513.82 Aligned_cols=206 Identities=45% Similarity=0.739 Sum_probs=195.2
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (355)
Q Consensus 124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA 203 (355)
.+||++|+++|++||++++...|+.++++... +++++|..+|++. +++|||||||+|||+|.|++++||+++|
T Consensus 4 ~~iL~~Ii~~k~~ev~~~~~~~~~~~~~~~~~--~~~~~~~~al~~~-----~~~vIaEiKraSPs~G~i~~~~d~~~~a 76 (454)
T PRK09427 4 PTVLAKIVADKAIWVAARKQQQPLASFQNEIQ--PSDRSFYDALKGP-----KTAFILECKKASPSKGLIRDDFDPAEIA 76 (454)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCHHHHHhhcC--cCCCCHHHHHhcC-----CCceEEEeecCCCCCCccCCCCCHHHHH
Confidence 47999999999999999999999999988653 5679999999752 4689999999999999999999999999
Q ss_pred HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (355)
Q Consensus 204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~ 283 (355)
+.| ++||+|||||||++||+||++||..+|++ +++||||||||||+|||+|||.+||||||||+++|++++|.+|+++
T Consensus 77 ~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 154 (454)
T PRK09427 77 RVY-KHYASAISVLTDEKYFQGSFDFLPIVRAI-VTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAV 154 (454)
T ss_pred HHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHH
Confidence 999 78899999999999999999999999996 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccc
Q 018446 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG 339 (355)
Q Consensus 284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~ 339 (355)
|++|||++||||||++|+++|+++ |+++||||||||+||++|+++|++|++.+|.
T Consensus 155 a~~lGl~~lvEvh~~~El~~al~~-~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~ 209 (454)
T PRK09427 155 AHSLNMGVLTEVSNEEELERAIAL-GAKVIGINNRNLRDLSIDLNRTRELAPLIPA 209 (454)
T ss_pred HHHcCCcEEEEECCHHHHHHHHhC-CCCEEEEeCCCCccceECHHHHHHHHhhCCC
Confidence 999999999999999999999997 9999999999999999999999999987653
No 7
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.9e-64 Score=528.24 Aligned_cols=217 Identities=37% Similarity=0.569 Sum_probs=204.2
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHH
Q 018446 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (355)
Q Consensus 124 ~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA 203 (355)
|+||++|+++|++||++++...|+.+|++.+...+++++|..+|+.. +..+|||||||+|||+|.|++++||+++|
T Consensus 1 ~~iL~~Ii~~k~~ev~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~----~~~~vIaEiKraSPs~G~i~~~~d~~~~a 76 (695)
T PRK13802 1 MSVLDELVAGALEDQRTRELTVSLEEVKKAAAAAPAPIDATRWLKRA----DGIPVIAEIKRASPSKGHLSDIPDPAALA 76 (695)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCcccHHHHHhhC----CCCeEEEEeecCCCCCCcCCCCCCHHHHH
Confidence 47999999999999999999999999999877778889999999753 34789999999999999999999999999
Q ss_pred HHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHH
Q 018446 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (355)
Q Consensus 204 ~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~ 283 (355)
+.|+++||+|||||||++||+||++||..||++ +++||||||||||+|||+|||.+||||||||+++|++++|++|+++
T Consensus 77 ~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 155 (695)
T PRK13802 77 REYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDL 155 (695)
T ss_pred HHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHH
Confidence 999999999999999999999999999999996 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhccccccccccCceEEecc
Q 018446 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVSGP 352 (355)
Q Consensus 284 A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~~~~l~~~~i~~V~~ 352 (355)
|++|||++||||||++|+++|+++ |++|||||||||+||+||+++|++|++.+|. ++++|.|
T Consensus 156 a~~lGme~LvEvh~~~el~~a~~~-ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~------~~~~VsE 217 (695)
T PRK13802 156 AHELGMTVLVETHTREEIERAIAA-GAKVIGINARNLKDLKVDVNKYNELAADLPD------DVIKVAE 217 (695)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHhC-CCCEEEEeCCCCccceeCHHHHHHHHhhCCC------CcEEEEc
Confidence 999999999999999999999997 9999999999999999999999999987653 3356655
No 8
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=100.00 E-value=2.3e-56 Score=421.16 Aligned_cols=209 Identities=56% Similarity=0.850 Sum_probs=199.8
Q ss_pred cccHHHHHHHHHHHHHHHHhccCCHHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI 202 (355)
Q Consensus 123 p~~iLe~Iv~~K~~EV~~~k~~~pl~~L~~~l~~~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i 202 (355)
++++|++|+++|+++|+.++...|+++|++.+...|.+++|..+|+. ++++|||||||+|||+|+|+.++||+++
T Consensus 1 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~vIaeik~~sps~g~i~~~~~~~~~ 75 (260)
T PRK00278 1 MMDILDKIVAYKREEVAARKAQVPLAELKARAAAAPPPRDFAAALRA-----GKPAVIAEVKKASPSKGVIREDFDPVEI 75 (260)
T ss_pred CccHHHHHHHHHHHHHHHHhccCCHHHHHHHHhhCCCCcCHHHHHhc-----CCCeEEEEeeCCCCCCCccCCCCCHHHH
Confidence 46899999999999999999999999999988777778999999973 3589999999999999999999999999
Q ss_pred HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHH
Q 018446 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK 282 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~ 282 (355)
|+.|+++||+|||||||++||+|+++||..||++ +++|||+||||+|+|||++|+.+|||+|+|+++.|++++|++|++
T Consensus 76 A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~ 154 (260)
T PRK00278 76 AKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLD 154 (260)
T ss_pred HHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHH
Confidence 9999999999999999999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcccc
Q 018446 283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGER 338 (355)
Q Consensus 283 ~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~~~ 338 (355)
+|+++||++||||||.+|+++|.++ |+++|||||||+.||++|++++.+|++.++
T Consensus 155 ~a~~lGl~~lvevh~~~E~~~A~~~-gadiIgin~rdl~~~~~d~~~~~~l~~~~p 209 (260)
T PRK00278 155 YAHSLGLDVLVEVHDEEELERALKL-GAPLIGINNRNLKTFEVDLETTERLAPLIP 209 (260)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHhCC
Confidence 9999999999999999999999997 999999999999999999999999987654
No 9
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=100.00 E-value=1.6e-33 Score=255.69 Aligned_cols=160 Identities=57% Similarity=0.914 Sum_probs=154.5
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
++.+||||+||+|||+|.++...||.++|+.|+++||++|+|+|++.+|+|+++++..||+. +++||+.||||+++||+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v 87 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQI 87 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeecCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhh
Q 018446 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~ 334 (355)
.+++.+|||+|+|....++.++++++++.+..+|++++++||+.+|++++.++ |++.||+|+||.+++..|++.+.+|.
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~-g~~~i~~t~~~~~~~~~~~~~~~~l~ 166 (217)
T cd00331 88 YEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALAL-GAKIIGINNRDLKTFEVDLNTTERLA 166 (217)
T ss_pred HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc-CCCEEEEeCCCccccCcCHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999997 99999999999999999999998887
Q ss_pred cc
Q 018446 335 EG 336 (355)
Q Consensus 335 ~~ 336 (355)
+.
T Consensus 167 ~~ 168 (217)
T cd00331 167 PL 168 (217)
T ss_pred Hh
Confidence 65
No 10
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.69 E-value=1.4e-16 Score=145.60 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=122.0
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---ccc-----ccc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----FIV 249 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKD-----FII 249 (355)
++|.-+.-. +.+.|++..++.++|++|.++||.|+++. ++++++.+|+. +++|+| +|| |++
T Consensus 6 ~~~~~~~~~--~~~~~~~~~~~~~~a~a~~~~G~~~~~~~--------~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~~ 74 (221)
T PRK01130 6 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRAN--------GVEDIKAIRAV-VDVPIIGIIKRDYPDSEVYI 74 (221)
T ss_pred CEEEEecCC--CCCCCCCHHHHHHHHHHHHHCCCeEEEcC--------CHHHHHHHHHh-CCCCEEEEEecCCCCCCceE
Confidence 355444333 23568888999999999999999999984 48999999986 899998 888 678
Q ss_pred CHH--HHHHHHHcCCcchHHHHhcCC-H--HHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC--
Q 018446 250 DAW--QIYYARTKGADAVLLIAAVLP-D--LDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLE-- 321 (355)
Q Consensus 250 dpy--QI~eAr~~GADAVLLIaaiL~-~--~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~-- 321 (355)
+++ |+.+|+.+|||+|+++...+. + +++.++++.+++ .|+..++++||.+|+.++.++ |+++|++|++++.
T Consensus 75 ~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~-G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 75 TPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL-GFDFIGTTLSGYTEE 153 (221)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc-CCCEEEcCCceeecC
Confidence 877 899999999999999888763 2 688999999999 999999999999999999997 9999999988774
Q ss_pred ---ccccChhhHHhhhcc
Q 018446 322 ---TFEVDNSNTKKLLEG 336 (355)
Q Consensus 322 ---TfevDl~~t~~L~~~ 336 (355)
++..+++...++.+.
T Consensus 154 ~~~~~~~~~~~i~~i~~~ 171 (221)
T PRK01130 154 TKKPEEPDFALLKELLKA 171 (221)
T ss_pred CCCCCCcCHHHHHHHHHh
Confidence 344556666666554
No 11
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.67 E-value=5.2e-16 Score=141.81 Aligned_cols=147 Identities=19% Similarity=0.227 Sum_probs=125.5
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---cccc-----cc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKEF-----IV 249 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKDF-----II 249 (355)
++|.-+.-- ++|.+++..++.++|++|.++|+.++|+ |++++++.+|+. +++|+| +||| ++
T Consensus 10 ~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~--------~~~~~~~~i~~~-~~iPil~~~~~~~~~~~~~i 78 (219)
T cd04729 10 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA--------NGVEDIRAIRAR-VDLPIIGLIKRDYPDSEVYI 78 (219)
T ss_pred CeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc--------CCHHHHHHHHHh-CCCCEEEEEecCCCCCCcee
Confidence 577766555 7899999999999999999999999996 899999999986 899998 7999 78
Q ss_pred CHH--HHHHHHHcCCcchHHHHhcCC--H-HHHHHHHHHHHHcC-CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC--
Q 018446 250 DAW--QIYYARTKGADAVLLIAAVLP--D-LDIRYMTKICKLLG-LTALVEVHDEREMDRVLGIEGIELIGINNRNLE-- 321 (355)
Q Consensus 250 dpy--QI~eAr~~GADAVLLIaaiL~--~-~~L~~L~~~A~~LG-LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~-- 321 (355)
++| |+.+++.+|||+|+++...+. . +.+.++++.++++| +..++++||.+|+.++.++ |+++|++|++++.
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~-G~d~i~~~~~g~t~~ 157 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKL-GFDIIGTTLSGYTEE 157 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHc-CCCEEEccCcccccc
Confidence 888 999999999999999888763 2 37899999999999 9999999999999999997 9999999877543
Q ss_pred ---ccccChhhHHhhhcc
Q 018446 322 ---TFEVDNSNTKKLLEG 336 (355)
Q Consensus 322 ---TfevDl~~t~~L~~~ 336 (355)
+...+++...++.+.
T Consensus 158 ~~~~~~~~~~~l~~i~~~ 175 (219)
T cd04729 158 TAKTEDPDFELLKELRKA 175 (219)
T ss_pred ccCCCCCCHHHHHHHHHh
Confidence 344566666666544
No 12
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.24 E-value=1.5e-11 Score=113.09 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=112.5
Q ss_pred CCCCHHHHHHHHHHcCceEEEEe------ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 195 EDFDPVEIARSYEKGGAACLSIL------TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVL------TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
...|+.++++.|.++|++|++|+ |++.| .|+...+..++. .+.+|.+++|+....+|+.+|..+|||+|.+.
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~-~~~~~~i~~~~~-~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~ 96 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKGIARAYGREY-AGDIPLIVKLNG-STSLSPKDDNDKVLVASVEDAVRLGADAVGVT 96 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChHHHHhccccc-CCCCcEEEEECC-CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEE
Confidence 46699999999999999999999 99888 577667766665 36677779999999999999999999999887
Q ss_pred HhcCCHH------HHHHHHHHHHHcCCcEEEEeCC----------HHHHHH----HhccCCCeEEEeeCCCCCccccChh
Q 018446 269 AAVLPDL------DIRYMTKICKLLGLTALVEVHD----------EREMDR----VLGIEGIELIGINNRNLETFEVDNS 328 (355)
Q Consensus 269 aaiL~~~------~L~~L~~~A~~LGLeaLVEVH~----------~eELer----Al~l~ga~iIGINNRdL~TfevDl~ 328 (355)
....... ++..+.+.|+.+|+..+||+|. .+++++ +.++ ||++|++++ ..|++
T Consensus 97 ~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~-GaD~Ik~~~------~~~~~ 169 (235)
T cd00958 97 VYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL-GADIVKTKY------TGDAE 169 (235)
T ss_pred EecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH-CCCEEEecC------CCCHH
Confidence 7766543 7888889999999999999976 677777 6675 999999963 34888
Q ss_pred hHHhhhcccc
Q 018446 329 NTKKLLEGER 338 (355)
Q Consensus 329 ~t~~L~~~~~ 338 (355)
..+++.+..+
T Consensus 170 ~~~~i~~~~~ 179 (235)
T cd00958 170 SFKEVVEGCP 179 (235)
T ss_pred HHHHHHhcCC
Confidence 8888876543
No 13
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.22 E-value=1.1e-10 Score=106.78 Aligned_cols=136 Identities=19% Similarity=0.223 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
-||.++|+.|.+.||.+|+|++...+|.|+. +.++.+++. +++|++.+++|.+..|+.++..+|||+|++....+.
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 3899999999999999999999999998874 777888875 899999999999999999999999999999988886
Q ss_pred HHHHHHHHHHHHHcCCcEEE----------EeC--------CHHHHHH-HhccCCCe--EEEeeCCCCCccccChhhHHh
Q 018446 274 DLDIRYMTKICKLLGLTALV----------EVH--------DEREMDR-VLGIEGIE--LIGINNRNLETFEVDNSNTKK 332 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLV----------EVH--------~~eELer-Al~l~ga~--iIGINNRdL~TfevDl~~t~~ 332 (355)
+ ...+.++++.+|++.++ .+| +..++.+ ..+. |++ ++.-++|+-.+...|++...+
T Consensus 107 d--~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~-g~~~ii~~~~~~~g~~~g~~~~~i~~ 183 (230)
T TIGR00007 107 N--PDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL-GLEGIIYTDISRDGTLSGPNFELTKE 183 (230)
T ss_pred C--HHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC-CCCEEEEEeecCCCCcCCCCHHHHHH
Confidence 4 45678899999988654 333 3334433 3343 766 556677888889999999888
Q ss_pred hhcc
Q 018446 333 LLEG 336 (355)
Q Consensus 333 L~~~ 336 (355)
+.+.
T Consensus 184 i~~~ 187 (230)
T TIGR00007 184 LVKA 187 (230)
T ss_pred HHHh
Confidence 8765
No 14
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.98 E-value=6.3e-09 Score=95.19 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
..||.++|+.|.+.|++.|.|++...++.|+. +.++.+++. +++||+..++|-+..|+.++...|||.|++-.+++
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 45999999999999999999999988888854 445555575 88999999999999999999999999999999998
Q ss_pred CHH-HHHHHHHHH---HHcCCcE---EEEeCCH--------HHHHHHhccCCCe-EEEe-eCCCCCccccChhhHHhhhc
Q 018446 273 PDL-DIRYMTKIC---KLLGLTA---LVEVHDE--------REMDRVLGIEGIE-LIGI-NNRNLETFEVDNSNTKKLLE 335 (355)
Q Consensus 273 ~~~-~L~~L~~~A---~~LGLea---LVEVH~~--------eELerAl~l~ga~-iIGI-NNRdL~TfevDl~~t~~L~~ 335 (355)
++. .++++.+.. ..+.+++ .|++|.. .|+.+.+.-.|++ ++.. ++|+......|++...++.+
T Consensus 108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~ 187 (233)
T PRK00748 108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA 187 (233)
T ss_pred hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH
Confidence 753 455555542 2245554 5666643 5666655533777 5555 67888889999999999976
Q ss_pred ccccc
Q 018446 336 GERGE 340 (355)
Q Consensus 336 ~~~~~ 340 (355)
..+.+
T Consensus 188 ~~~ip 192 (233)
T PRK00748 188 AVPIP 192 (233)
T ss_pred hCCCC
Confidence 54433
No 15
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.69 E-value=5.7e-08 Score=89.80 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=88.3
Q ss_pred CCCCCHHHHHHHHhcCCCCCeeccccccCHHH-------HHHHHHcCCcchHHHHh--cCCHHHHHHHHHHHHHcCCcEE
Q 018446 222 YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ-------IYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTAL 292 (355)
Q Consensus 222 fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ-------I~eAr~~GADAVLLIaa--iL~~~~L~~L~~~A~~LGLeaL 292 (355)
++-.++.+|..+++. +++|+...|+-..+++ +..++.+|||+||+..+ .+..+++.++++.|+++||+++
T Consensus 40 ~~~p~~~~l~~v~~~-~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I 118 (223)
T PRK04302 40 AVAPQALDIRRVAEE-VDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESV 118 (223)
T ss_pred EEECCHHHHHHHHHh-cCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEE
Confidence 455899999999986 8999999998776666 55668899999999875 6778899999999999999999
Q ss_pred EEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 293 VEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 293 VEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
+++|+.++++++... +.++|++++|++.+..+
T Consensus 119 ~~v~~~~~~~~~~~~-~~~~I~~~p~~~igt~~ 150 (223)
T PRK04302 119 VCVNNPETSAAAAAL-GPDYVAVEPPELIGTGI 150 (223)
T ss_pred EEcCCHHHHHHHhcC-CCCEEEEeCccccccCC
Confidence 999999999998876 88999999998765543
No 16
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.65 E-value=1.9e-07 Score=87.61 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCCCee-c---cccccCHHH-HHHHHHcCCcchHHHHhcCC-HHHHHHHHHHHHHcCCcEEEEeCC---
Q 018446 227 FENLEAVRSAGVKCPLL-C---KEFIVDAWQ-IYYARTKGADAVLLIAAVLP-DLDIRYMTKICKLLGLTALVEVHD--- 297 (355)
Q Consensus 227 ~edL~~VR~a~v~lPVL-r---KDFIIdpyQ-I~eAr~~GADAVLLIaaiL~-~~~L~~L~~~A~~LGLeaLVEVH~--- 297 (355)
++.++++|+. +++|++ + ++|+.++.+ +.+++.+|||+|++....++ .+++.++++.++++||+++++||.
T Consensus 63 ~~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 63 WPLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 8999999985 899974 3 888889999 78899999999999755443 468899999999999999999999
Q ss_pred HHHHHHHhcc-CCCeEEEeeCCCCCccccChhhH-Hhhh
Q 018446 298 EREMDRVLGI-EGIELIGINNRNLETFEVDNSNT-KKLL 334 (355)
Q Consensus 298 ~eELerAl~l-~ga~iIGINNRdL~TfevDl~~t-~~L~ 334 (355)
.++++..++. ++.-++++|++...+|..++... .++.
T Consensus 142 ~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr 180 (244)
T PRK13125 142 DLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVR 180 (244)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHH
Confidence 6678877764 23344599999999998887644 4443
No 17
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.24 E-value=2.5e-05 Score=71.51 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
..||.++|+.|.+.||++|.|......|.| .++.++.+++. +++||.....|-++-|+.+....|||.|++-.+.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 349999999999999999999988777765 46777777775 78999999999999999999999999998877777
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe------------------CCHHHHHHHhccCCCeEEEeeCCCCCc--cccChhhHHh
Q 018446 273 PDLDIRYMTKICKLLGLTALVEV------------------HDEREMDRVLGIEGIELIGINNRNLET--FEVDNSNTKK 332 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVEV------------------H~~eELerAl~l~ga~iIGINNRdL~T--fevDl~~t~~ 332 (355)
.+ ...+.++++.+|-+.++-. ++..|+-+.+.-.|++-|-+.+++-.. -..|.+...+
T Consensus 107 ~d--p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~ 184 (234)
T cd04732 107 KN--PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKE 184 (234)
T ss_pred hC--hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHH
Confidence 54 4456777888887544332 245555554543478888887764432 2255666666
Q ss_pred hhcc
Q 018446 333 LLEG 336 (355)
Q Consensus 333 L~~~ 336 (355)
+...
T Consensus 185 i~~~ 188 (234)
T cd04732 185 LAAA 188 (234)
T ss_pred HHHh
Confidence 6543
No 18
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.18 E-value=1.5e-05 Score=72.09 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L 277 (355)
+..++++...++|+.+|-|-.... ...+.++.+++. ..-..+-=.-+++..|+.+|..+|||.|.+ +. ..
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~-~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~-----p~-~~ 86 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLRTP---GALEAIRALRKE-FPEALIGAGTVLTPEQADAAIAAGAQFIVS-----PG-LD 86 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHHHHcCCCEEEc-----CC-CC
Confidence 566889999999999999876644 366778888764 221122334468899999999999999853 32 34
Q ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 278 ~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
.++.++++.+|+..+++|.|.+|+.+|++. |+++|++..
T Consensus 87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~-Gad~i~~~p 125 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVATPTEIMQALEL-GADIVKLFP 125 (190)
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHC-CCCEEEEcC
Confidence 578999999999999999999999999996 999999843
No 19
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.17 E-value=9.5e-06 Score=69.28 Aligned_cols=128 Identities=23% Similarity=0.217 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHH----HHHHHhcCCCCCeeccccccCHHHHH-----HHHHcCCcchHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIY-----YARTKGADAVLLI 268 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed----L~~VR~a~v~lPVLrKDFIIdpyQI~-----eAr~~GADAVLLI 268 (355)
++.++++.+.++|+.++-+.+-...+.+.... +..+++. +++|++...++.+++|.. .++.+|+|+|.|.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 67889999999999999998877666666443 6667664 789999999999999976 7999999999998
Q ss_pred HhcCC-HHHHHHHHHHHHHc--CCcEEEEeCCHHHHHHH--hccCCCeEEEeeCCCCCccccCh
Q 018446 269 AAVLP-DLDIRYMTKICKLL--GLTALVEVHDEREMDRV--LGIEGIELIGINNRNLETFEVDN 327 (355)
Q Consensus 269 aaiL~-~~~L~~L~~~A~~L--GLeaLVEVH~~eELerA--l~l~ga~iIGINNRdL~TfevDl 327 (355)
..... .+.+.++++..++. ++...+.++...+.+.+ ... |++.|.+.++...+...+.
T Consensus 92 ~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~d~i~~~~~~~~~~~~~~ 154 (200)
T cd04722 92 GAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEA-GVDEVGLGNGGGGGGGRDA 154 (200)
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHc-CCCEEEEcCCcCCCCCccC
Confidence 77753 12344555555554 99999999988887775 554 8999999999988776654
No 20
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.15 E-value=8.6e-06 Score=73.43 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecccc-ccC--HHHHHHHHHcCCcchHHHHhcCCH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEF-IVD--AWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDF-IId--pyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
+...+++.. .+|...|-|=|.- +....++-+..+|+...+.++.+ |+ +.| .||+.++..+|||+|..-+ ..+.
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~-d~k~~d~~~~~~~~~~~~Gad~i~vh~-~~~~ 88 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLA-DLKTMDAGEYEAEQAFAAGADIVTVLG-VADD 88 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEE-EEeeccchHHHHHHHHHcCCCEEEEec-cCCH
Confidence 456788888 7899999993221 33456888999987522444443 55 334 5699999999999988443 3455
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCH----HHHHHHhccCCCeEEEeeC
Q 018446 275 LDIRYMTKICKLLGLTALVEVHDE----REMDRVLGIEGIELIGINN 317 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVEVH~~----eELerAl~l~ga~iIGINN 317 (355)
..+.+++++|+++||.+++++++. +++..+.++ |+++|+++.
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~p 134 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHT 134 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcC
Confidence 578999999999999999999775 777888886 999999974
No 21
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.94 E-value=7.4e-05 Score=66.80 Aligned_cols=133 Identities=20% Similarity=0.214 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
+..++++.+.++ +.+|-|-+.- +-...++.++.+|+...++|+..- =.-.+.|++.+++.+|||.|++..... ++
T Consensus 14 ~~~~~~~~l~~~-i~~ieig~~~-~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~-~~ 90 (202)
T cd04726 14 EALELAKKVPDG-VDIIEAGTPL-IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP-LS 90 (202)
T ss_pred HHHHHHHHhhhc-CCEEEcCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-HH
Confidence 456788888887 8887772221 112348899999885357888763 222334789999999999999887654 35
Q ss_pred HHHHHHHHHHHcCCcEEEE---eCCHHHHHHHhccCCCeEEEee-CCCCCcc--ccChhhHHhhh
Q 018446 276 DIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGIN-NRNLETF--EVDNSNTKKLL 334 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLVE---VH~~eELerAl~l~ga~iIGIN-NRdL~Tf--evDl~~t~~L~ 334 (355)
.+.++++++++.|+..+++ .+|.+|+.+++.. +++.++++ +++-.++ ....+...++.
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~-~~d~v~~~~~~~~~~~~~~~~~~~i~~~~ 154 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL-GVDIVILHRGIDAQAAGGWWPEDDLKKVK 154 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC-CCCEEEEcCcccccccCCCCCHHHHHHHH
Confidence 7889999999999999975 4599999998875 99999995 6666666 23344444443
No 22
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.77 E-value=0.00035 Score=64.90 Aligned_cols=135 Identities=15% Similarity=0.198 Sum_probs=96.6
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYY 256 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~e 256 (355)
.+|+=+.-.++. +..+++++..++|..+|=|--... +.++.|+.+++. ..-| ++===-++++.|+..
T Consensus 11 ~~~~v~r~~~~~--------~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~-~~~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 11 PLIAILRGITPD--------EALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKA-LGDRALIGAGTVLSPEQVDR 78 (206)
T ss_pred CEEEEEeCCCHH--------HHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHH-cCCCcEEeEEecCCHHHHHH
Confidence 366666444443 567899999999999998853322 566788888764 2212 111112678999999
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhc
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~ 335 (355)
|+.+|||.+++ +..-.++.+.|+..|+..++.+||.+|+.+|.+. |++.|++ +.+-.+.++.-..+..
T Consensus 79 a~~aGA~fivs------p~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~-Gad~vk~----Fpa~~~G~~~l~~l~~ 146 (206)
T PRK09140 79 LADAGGRLIVT------PNTDPEVIRRAVALGMVVMPGVATPTEAFAALRA-GAQALKL----FPASQLGPAGIKALRA 146 (206)
T ss_pred HHHcCCCEEEC------CCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHc-CCCEEEE----CCCCCCCHHHHHHHHh
Confidence 99999999766 3334578899999999999999999999999997 9999998 2233344555555543
No 23
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.33 E-value=0.0019 Score=63.33 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=90.6
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI 248 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFI 248 (355)
+||.+|. -+++|+.-+++||.++-|| .|..--+| +.+|++.|++. |++||+-+-=+
T Consensus 10 g~~~~v~--------------~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVIGi~K~ 74 (283)
T cd04727 10 GVIMDVT--------------NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVMAKVRI 74 (283)
T ss_pred CeEEEeC--------------CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeEEeeeh
Confidence 5888883 2479999999999998887 56655555 68999999996 99998765444
Q ss_pred cCHHHHHHHHHcCCcchHHHHhc--CCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 249 VDAWQIYYARTKGADAVLLIAAV--LPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 249 IdpyQI~eAr~~GADAVLLIaai--L~~~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
-+-..+.+-..+|+|-| .+- +.+ +.+++.+.+. ++.-.+-.+.|.+|..+|.++ |+++||--.
T Consensus 75 ~~~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~~~l~MAD~stleEal~a~~~-Gad~I~TTl 140 (283)
T cd04727 75 GHFVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKFKVPFVCGARNLGEALRRISE-GAAMIRTKG 140 (283)
T ss_pred hHHHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHcCCcEEccCCCHHHHHHHHHC-CCCEEEecC
Confidence 33344444456899998 332 333 5677877776 588888899999999999997 999999875
No 24
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.25 E-value=0.0035 Score=57.25 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=87.3
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIY 255 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdpyQI~ 255 (355)
.||+-+.-.+|. +..++++...++|+.++=+--... +..+.+..+++. .|.++ -..++..-|+.
T Consensus 13 ~~~~v~r~~~~~--------~~~~~~~~~~~~Gv~~vqlr~k~~---~~~e~~~~~~~~---~~~~~~g~gtvl~~d~~~ 78 (187)
T PRK07455 13 RAIAVIRAPDLE--------LGLQMAEAVAAGGMRLIEITWNSD---QPAELISQLREK---LPECIIGTGTILTLEDLE 78 (187)
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHh---CCCcEEeEEEEEcHHHHH
Confidence 366666544443 466788999999999988753222 567778888764 35432 33566668999
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI 315 (355)
.|..+|||.|.+= -++ .+..++|+.+|+..++=+||.+|+.+|.+. |++.|++
T Consensus 79 ~A~~~gAdgv~~p--~~~----~~~~~~~~~~~~~~i~G~~t~~e~~~A~~~-Gadyv~~ 131 (187)
T PRK07455 79 EAIAAGAQFCFTP--HVD----PELIEAAVAQDIPIIPGALTPTEIVTAWQA-GASCVKV 131 (187)
T ss_pred HHHHcCCCEEECC--CCC----HHHHHHHHHcCCCEEcCcCCHHHHHHHHHC-CCCEEEE
Confidence 9999999997542 233 345788999999999999999999999986 9999999
No 25
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.21 E-value=0.0033 Score=61.83 Aligned_cols=134 Identities=25% Similarity=0.319 Sum_probs=91.1
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe-----ccCCCCCCCH-----HHHHHHHhcCCCCCeecc--
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKGSF-----ENLEAVRSAGVKCPLLCK-- 245 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL-----TD~~fF~GS~-----edL~~VR~a~v~lPVLrK-- 245 (355)
.||+-+-..||. +..++|+..++.||++|=+. .++..++++. +.+..+|++ +++||+.|
T Consensus 101 pvi~si~g~~~~--------~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~ 171 (325)
T cd04739 101 PVIASLNGVSAG--------GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS 171 (325)
T ss_pred eEEEEeCCCCHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC
Confidence 588888554441 34688999999999999553 4566666665 567788885 89999999
Q ss_pred -ccccCHHHHHHHHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCCcEEE--EeCCHHH
Q 018446 246 -EFIVDAWQIYYARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGLTALV--EVHDERE 300 (355)
Q Consensus 246 -DFIIdpyQI~eAr~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGLeaLV--EVH~~eE 300 (355)
++---..-...+..+|||+|.++-..... .-|+.+.+.+...++..+- -|+|.+|
T Consensus 172 p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D 251 (325)
T cd04739 172 PFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED 251 (325)
T ss_pred CCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH
Confidence 54311223344678899999998765221 1123334444555554332 5899999
Q ss_pred HHHHhccCCCeEEEeeCCCCC
Q 018446 301 MDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 301 LerAl~l~ga~iIGINNRdL~ 321 (355)
+.+.+.+ ||+.|+|---.+.
T Consensus 252 a~e~l~a-GA~~Vqv~ta~~~ 271 (325)
T cd04739 252 VVKYLLA-GADVVMTTSALLR 271 (325)
T ss_pred HHHHHHc-CCCeeEEehhhhh
Confidence 9999986 9999999854443
No 26
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.09 E-value=0.008 Score=59.06 Aligned_cols=134 Identities=26% Similarity=0.365 Sum_probs=90.9
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe-----ccCCCCCCC-----HHHHHHHHhcCCCCCeecc-
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKGS-----FENLEAVRSAGVKCPLLCK- 245 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL-----TD~~fF~GS-----~edL~~VR~a~v~lPVLrK- 245 (355)
..||+-|-..++- +..++|+.+++.||++|-+. .++.+.++. .+.++.+|++ +++||+.|
T Consensus 102 ~pvi~sI~g~~~~--------e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl 172 (334)
T PRK07565 102 IPVIASLNGSSAG--------GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKL 172 (334)
T ss_pred CcEEEEeccCCHH--------HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEe
Confidence 3689988554442 45689999999999999883 344444333 3556788885 89999999
Q ss_pred --ccccCHHHHHH-HHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCCcEEE--EeCCH
Q 018446 246 --EFIVDAWQIYY-ARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGLTALV--EVHDE 298 (355)
Q Consensus 246 --DFIIdpyQI~e-Ar~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGLeaLV--EVH~~ 298 (355)
++ -+.-.+.. +..+|||+|.++-..... .-++...++.+.+++..+- -|+|.
T Consensus 173 ~p~~-~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~ 251 (334)
T PRK07565 173 SPYF-SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDA 251 (334)
T ss_pred CCCc-hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCH
Confidence 33 24445544 567999999887765321 1123333444555554332 48999
Q ss_pred HHHHHHhccCCCeEEEeeCCCCC
Q 018446 299 REMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 299 eELerAl~l~ga~iIGINNRdL~ 321 (355)
+|+.+.+.+ ||+.|+|-.=.+.
T Consensus 252 ~Da~e~l~a-GA~~V~v~t~~~~ 273 (334)
T PRK07565 252 EDVIKMLLA-GADVVMIASALLR 273 (334)
T ss_pred HHHHHHHHc-CCCceeeehHHhh
Confidence 999999986 9999999755444
No 27
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.90 E-value=0.0065 Score=56.77 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---cc-----ccccCHH--HHHHHHHcCCcchHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CK-----EFIVDAW--QIYYARTKGADAVLLIA 269 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rK-----DFIIdpy--QI~eAr~~GADAVLLIa 269 (355)
..+|++-+.+||.+|=.. +.+|++.+|+. +++||+ -+ |..|.|. .+.+-..+|||-|-|=+
T Consensus 2 ~~mA~Aa~~gGA~giR~~--------~~~dI~aik~~-v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa 72 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRAN--------GVEDIRAIKKA-VDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA 72 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE--------SHHHHHHHHTT-B-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-
T ss_pred HHHHHHHHHCCceEEEcC--------CHHHHHHHHHh-cCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec
Confidence 468999999999998765 79999999996 999975 23 3334442 45666778999887744
Q ss_pred hcC-CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 270 AVL-PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 270 aiL-~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
.-= -+..|.+|++..++.+.-.+-.+.|.+|...|.++ |+++||---.-...-.
T Consensus 73 T~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~-G~D~I~TTLsGYT~~t 127 (192)
T PF04131_consen 73 TDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL-GFDIIGTTLSGYTPYT 127 (192)
T ss_dssp SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT-T-SEEE-TTTTSSTTS
T ss_pred CCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc-CCCEEEcccccCCCCC
Confidence 332 12679999999999998888899999999999998 9999998766554444
No 28
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.82 E-value=0.012 Score=52.72 Aligned_cols=115 Identities=19% Similarity=0.166 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCceEEEEe-ccCCCCCCC---HHHHHHHHhcCCCCCeecccccc--CHHHHHHHHHcCCcchHHHHhcC
Q 018446 199 PVEIARSYEKGGAACLSIL-TDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIV--DAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVL-TD~~fF~GS---~edL~~VR~a~v~lPVLrKDFII--dpyQI~eAr~~GADAVLLIaaiL 272 (355)
..+.++...++||+.|=+- -|..|++++ ++.++.+|+. ++.|+. =|+.+ ....+.++..+|||.|.+-...
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~-v~lm~~~~~~~~~~~~~~gadgv~vh~~~- 89 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPID-VHLMVENPDRYIEDFAEAGADIITVHPEA- 89 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEE-EEeeeCCHHHHHHHHHHcCCCEEEEccCC-
Confidence 5578889999999999995 676676654 5677888874 677853 22222 3456888899999998876543
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCC
Q 018446 273 PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNR 318 (355)
.++....++.++.+|+...+- .|+..|..+++.. +++.|++-..
T Consensus 90 -~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~-~~d~i~~~~~ 135 (210)
T TIGR01163 90 -SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP-DVDLVLLMSV 135 (210)
T ss_pred -chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh-hCCEEEEEEE
Confidence 345677789999999887665 6666665555542 5677666433
No 29
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.81 E-value=0.015 Score=54.61 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=93.0
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC--eeccccccCHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP--LLCKEFIVDAWQIY 255 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP--VLrKDFIIdpyQI~ 255 (355)
.||+=+.-.++. +...+++++.++|..+|=|--.. .+.++-++.+++..-+-| ++-==-++++-|..
T Consensus 14 ~vi~vir~~~~~--------~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~ 82 (213)
T PRK06552 14 GVVAVVRGESKE--------EALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR 82 (213)
T ss_pred CEEEEEECCCHH--------HHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence 366656444332 56789999999999999886553 367888888886411113 34445578999999
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI 315 (355)
.|..+||+-++ ++---.+++++|++.|+-.+--+||..|+.+|++. |+++|++
T Consensus 83 ~a~~aGA~Fiv------sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~-Gad~vkl 135 (213)
T PRK06552 83 LAILAGAQFIV------SPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEA-GSEIVKL 135 (213)
T ss_pred HHHHcCCCEEE------CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHc-CCCEEEE
Confidence 99999999865 33334578999999999999999999999999996 9999998
No 30
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.77 E-value=0.0099 Score=61.88 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH--------HH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LI 268 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL--------LI 268 (355)
-+..+.++.+.++|+++|.|-+-..+=..-.+.++.+|+...++||+. +|+.+.-+...+..+|||+|- -+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~t 302 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVGPGAMCT 302 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCcCCcccc
Confidence 366789999999999999886655444444566777776545899999 999999999999999999997 55
Q ss_pred HhcCCH---HHHHH---HHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeC
Q 018446 269 AAVLPD---LDIRY---MTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 269 aaiL~~---~~L~~---L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINN 317 (355)
.+.+.. .++.. +.+.|+..|...+-+ +++..++-+|+.+ ||+.+++-+
T Consensus 303 tr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~-GA~~vm~g~ 358 (475)
T TIGR01303 303 TRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAA-GASNVMVGS 358 (475)
T ss_pred CccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CCCEEeech
Confidence 565532 34444 455567889888887 8999999999997 998777643
No 31
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.72 E-value=0.014 Score=60.93 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH-H--------
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL-I-------- 268 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL-I-------- 268 (355)
+-.+.+.+..++|+..|-|-+-..+-...++.++.+|+...++||... -+.++.+...+..+|||+|.. +
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG-~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t 319 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAG-NVVTADQAKNLIDAGADGLRIGMGSGSICIT 319 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEEC-CcCCHHHHHHHHHcCCCEEEECCcCCccccc
Confidence 446889999999999999987422222346789999885347899997 578999999999999999853 1
Q ss_pred ---Hhc-CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446 269 ---AAV-LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLET 322 (355)
Q Consensus 269 ---aai-L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~T 322 (355)
+.+ .+. ..+.++.++|++.|+..+. =+++..|+-+|+.+ ||+.+.+-+.=..|
T Consensus 320 ~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~-GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 320 QEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL-GADCVMLGSLLAGT 379 (495)
T ss_pred chhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc-CCCEEEECchhccc
Confidence 001 111 2345677788899999998 89999999999997 99999887764333
No 32
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.59 E-value=0.0075 Score=60.95 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=75.9
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHcCCcEEEE--eCCH
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLLGLTALVE--VHDE 298 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~LGLeaLVE--VH~~ 298 (355)
++++++.+|+. .+.|++.|+ |+++-....|..+|+|+|.+-- .-|+ ...+..|.++++..++..+++ |++-
T Consensus 224 ~w~~i~~ir~~-~~~pviiKg-V~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g 301 (361)
T cd04736 224 NWQDLRWLRDL-WPHKLLVKG-IVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRG 301 (361)
T ss_pred CHHHHHHHHHh-CCCCEEEec-CCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCH
Confidence 58999999996 899999999 6899999999999999985311 0111 124667777788889999997 9999
Q ss_pred HHHHHHhccCCCeEEEeeCCCCCcc
Q 018446 299 REMDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 299 eELerAl~l~ga~iIGINNRdL~Tf 323 (355)
.|+-+|+.+ ||+.++|-.-=|..+
T Consensus 302 ~Dv~KALaL-GA~aV~iGr~~l~~l 325 (361)
T cd04736 302 SDIVKALAL-GANAVLLGRATLYGL 325 (361)
T ss_pred HHHHHHHHc-CCCEEEECHHHHHHH
Confidence 999999998 999999866544433
No 33
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.54 E-value=0.021 Score=59.19 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH-----
Q 018446 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL----- 267 (355)
Q Consensus 193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL----- 267 (355)
+..+-+..+.++.+.++|+..|-|-+...+-.|-++.+..+|+...++||+.++ +++.-+...+..+|||+|-.
T Consensus 223 i~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~-v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 223 VGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGN-VATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred cccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEec-cCCHHHHHHHHHcCCCEEEECCCCC
Confidence 443335688999999999998865554344456778888998753489999965 77999999999999999853
Q ss_pred ---HHhcC---CHHHHHH---HHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeC
Q 018446 268 ---IAAVL---PDLDIRY---MTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 268 ---IaaiL---~~~~L~~---L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINN 317 (355)
+...+ +-.++.. ..+.|+..|...+. -+++..|+-+|+.+ ||+.+.+-.
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA~~v~~G~ 361 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GASAVMLGS 361 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CCCEEEECc
Confidence 01111 1113444 44555567999998 79999999999997 998877643
No 34
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.49 E-value=0.029 Score=52.73 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=94.4
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA 257 (355)
.+|+=+.-.+|. +..+++++..++|..+|=|--.. .+.++-++.+|+...+ -++==+-+++++|...|
T Consensus 16 ~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEitl~~---~~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a 83 (212)
T PRK05718 16 PVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVTLRT---PAALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQA 83 (212)
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHH
Confidence 477766555554 56789999999999998876332 2577888888864222 35666889999999999
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI 315 (355)
..+|||-++-. .+++ ++++.|+++|+..+=.+.|..|+..|.++ |+++|-+
T Consensus 84 ~~aGA~FivsP--~~~~----~vi~~a~~~~i~~iPG~~TptEi~~a~~~-Ga~~vKl 134 (212)
T PRK05718 84 IEAGAQFIVSP--GLTP----PLLKAAQEGPIPLIPGVSTPSELMLGMEL-GLRTFKF 134 (212)
T ss_pred HHcCCCEEECC--CCCH----HHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEE
Confidence 99999976543 3443 67899999999999999999999999997 9999999
No 35
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.46 E-value=0.025 Score=50.77 Aligned_cols=107 Identities=22% Similarity=0.264 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-----CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-----~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
+..+..+...++|++++- +..+. . ...+.+..+++. ..++|++-. .++..+..+|||+|.+-...+
T Consensus 22 ~~~~~~~~~~~~gv~~v~-lr~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~~~~ 92 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQ-LREKG-L-DTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQDDL 92 (212)
T ss_pred cHHHHHHHHHhcCCCEEE-EeCCC-C-CHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCcccC
Confidence 466777777788998883 44432 1 234444333321 134566544 356789999999988765544
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
... .++..+..|+-+=+.+||.+|+.++... |++.|++..-
T Consensus 93 ~~~----~~~~~~~~~~~~g~~~~t~~e~~~a~~~-gaD~v~~~~~ 133 (212)
T PRK00043 93 PVA----DARALLGPDAIIGLSTHTLEEAAAALAA-GADYVGVGPI 133 (212)
T ss_pred CHH----HHHHHcCCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCc
Confidence 332 2233445677788899999999999986 9999997643
No 36
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.43 E-value=0.019 Score=56.52 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=83.3
Q ss_pred HHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 201 EIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
++|+.-+++||.|+-.| .|-+--+| +.++++.|+++ |++||+-|==|-|-.....--++|+|-|= =...
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~-V~iPVig~~kigh~~Ea~~L~~~GvDiID-eTe~ 98 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDA-VSIPVMAKVRIGHFVEAQILEALGVDYID-ESEV 98 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHh-CCCCEEEEeeccHHHHHHHHHHcCCCEEE-ccCC
Confidence 69999999999999887 45555555 68999999996 99999766544443333333358999981 1123
Q ss_pred CCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446 272 LPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 272 L~~~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGIN 316 (355)
|.+ ..+++.+.+. ++.--+-.+.|.+|..++... |+++|+--
T Consensus 99 lrP--ade~~~~~K~~f~vpfmad~~~l~EAlrai~~-GadmI~Tt 141 (287)
T TIGR00343 99 LTP--ADWTFHIDKKKFKVPFVCGARDLGEALRRINE-GAAMIRTK 141 (287)
T ss_pred CCc--HHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCEEecc
Confidence 544 4667766666 588888899999999999996 99999987
No 37
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.36 E-value=0.051 Score=52.70 Aligned_cols=118 Identities=22% Similarity=0.327 Sum_probs=88.4
Q ss_pred HHHHHHHcCceEEEEeccCCCCC--CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CH
Q 018446 202 IARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PD 274 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~--GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~ 274 (355)
.++.-++.|+.+|.+..+....+ ...+.++.+|+. +++||+.|. +.++.....+..+|||+|.+.-. .+ ..
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~-v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~ 211 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKG-ILTPEDALRAVDAGADGIVVSNHGGRQLDGAP 211 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-cCCCEEEee-cCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCc
Confidence 34444667999999877754311 246899999985 789999997 47888889999999999987432 11 23
Q ss_pred HHHHHHHHHHHHcC--CcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446 275 LDIRYMTKICKLLG--LTALVE--VHDEREMDRVLGIEGIELIGINNRNLET 322 (355)
Q Consensus 275 ~~L~~L~~~A~~LG--LeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~T 322 (355)
..+..+.++++.++ +..+.. |+|..++.+++.+ ||+.|+|-..-|..
T Consensus 212 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l-GAd~V~ig~~~l~~ 262 (299)
T cd02809 212 ATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL-GADAVLIGRPFLYG 262 (299)
T ss_pred CHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEcHHHHHH
Confidence 35666777777774 766664 8999999999997 99999998766544
No 38
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.025 Score=53.90 Aligned_cols=144 Identities=23% Similarity=0.302 Sum_probs=103.2
Q ss_pred eEEeEeee--cCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee---ccc-----c
Q 018446 178 ALIAEVKK--ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----F 247 (355)
Q Consensus 178 aVIAEvKR--aSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL---rKD-----F 247 (355)
++|.-+.. -+| +...+=...+|++-+++||.+|=.. +.+|++.+|+. |++||+ -+| .
T Consensus 16 glIVSCQal~~~p----l~~~~iv~~mA~Aa~~gGAvgiR~~--------gv~dIkai~~~-v~vPIIGIiKrd~~~s~v 82 (229)
T COG3010 16 GLIVSCQALPGEP----LDSPEIVAAMALAAEQGGAVGIRIE--------GVEDIKAIRAV-VDVPIIGIIKRDYPDSPV 82 (229)
T ss_pred CeEEEeecCCCCC----CcchhHHHHHHHHHHhCCcceEeec--------chhhHHHHHhh-CCCCeEEEEecCCCCCCc
Confidence 36666642 233 3333445688999999999998654 79999999985 999965 343 3
Q ss_pred ccCHH--HHHHHHHcCCcchHHHHhcC--CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC---
Q 018446 248 IVDAW--QIYYARTKGADAVLLIAAVL--PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL--- 320 (355)
Q Consensus 248 IIdpy--QI~eAr~~GADAVLLIaaiL--~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL--- 320 (355)
-|.|+ .|.+-...|||-|-+=+..= ++.++++|++..+..|.-..-.+.|.+|-..|.++ |+++||=.=.-.
T Consensus 83 ~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~-G~D~IGTTLsGYT~~ 161 (229)
T COG3010 83 RITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL-GFDIIGTTLSGYTGY 161 (229)
T ss_pred eecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc-CCcEEecccccccCC
Confidence 44554 47777788998776544332 34489999999999999999999999999999998 999998543333
Q ss_pred --CccccChhhHHhhhc
Q 018446 321 --ETFEVDNSNTKKLLE 335 (355)
Q Consensus 321 --~TfevDl~~t~~L~~ 335 (355)
+.-+-|++--.+|.+
T Consensus 162 ~~~~~~pDf~lvk~l~~ 178 (229)
T COG3010 162 TEKPTEPDFQLVKQLSD 178 (229)
T ss_pred CCCCCCCcHHHHHHHHh
Confidence 333445555555544
No 39
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.26 E-value=0.043 Score=55.67 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHcCceEEEEe--c-cCCCC--CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh-
Q 018446 197 FDPVEIARSYEKGGAACLSIL--T-DEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA- 270 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVL--T-D~~fF--~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa- 270 (355)
.+..++++..+++||++|.|- | +..|+ .|.+.+|.++++. .++||+..| +.+.-...++...|||+|+ +..
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-~~IPVI~G~-V~t~e~A~~~~~aGaDgV~-~G~g 218 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-LDVPVIAGG-VNDYTTALHLMRTGAAGVI-VGPG 218 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEE-ECCC
Confidence 378899999999999999985 3 34443 3578999998885 799999977 7888888889999999998 331
Q ss_pred -------cCC--HHHHHHHHHH-------HHHcC---CcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 271 -------VLP--DLDIRYMTKI-------CKLLG---LTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 271 -------iL~--~~~L~~L~~~-------A~~LG---LeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
.|+ -.+...+.+. ..+.| ...+.+ +++-.++-+|+.+ ||+-+++-.+=+.|-|
T Consensus 219 g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAl-GAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 219 GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIAC-GADAVVLGSPLARAAE 292 (369)
T ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHc-CCCEeeeHHHHHhhhc
Confidence 221 1122233332 23345 566654 8999999999997 9999998766555444
No 40
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.24 E-value=0.029 Score=57.70 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH--------H
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI--------A 269 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI--------a 269 (355)
+-.+-++...++|+..|.|-+-..+-.+-.+.++.+|+...++||+.++ +.++-+...+..+|||+|-.= .
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~-v~t~~~a~~l~~aGad~i~vg~g~G~~~~t 302 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN-VATAEQAKALIDAGADGLRVGIGPGSICTT 302 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHHHhCCCEEEECCCCCcCCcc
Confidence 4456778888999999999774333345677888888753589999965 679999999999999998421 1
Q ss_pred hcC---C-H--HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 270 AVL---P-D--LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 270 aiL---~-~--~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNR 318 (355)
..+ + + ..+.+..++|+..|+..+. =+++..|+-+|+.+ ||+.+++-..
T Consensus 303 ~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~-GA~~V~~G~~ 358 (450)
T TIGR01302 303 RIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAA-GADAVMLGSL 358 (450)
T ss_pred ceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECch
Confidence 111 1 1 2345566778889998888 69999999999997 9998877543
No 41
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.19 E-value=0.067 Score=53.59 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=74.1
Q ss_pred CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh-------cCC-HHHHHHHHHHHHHcC--CcEEE-
Q 018446 225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-------VLP-DLDIRYMTKICKLLG--LTALV- 293 (355)
Q Consensus 225 GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa-------iL~-~~~L~~L~~~A~~LG--LeaLV- 293 (355)
+++++|+.+|+. .++||+-|.. .++.-...+..+|+|+|.+.-. ..+ -.-|.+..+..+.+| +..++
T Consensus 200 ~~~~~i~~l~~~-~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~ 277 (344)
T cd02922 200 LTWDDIKWLRKH-TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD 277 (344)
T ss_pred CCHHHHHHHHHh-cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 788999999985 8999999965 6899999999999999886431 111 223445555444554 55555
Q ss_pred -EeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 294 -EVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 294 -EVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
=|.+-.++-+++.+ ||+.++|-..-|..+..
T Consensus 278 GGIr~G~Dv~kalaL-GA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 278 GGVRRGTDVLKALCL-GAKAVGLGRPFLYALSA 309 (344)
T ss_pred CCCCCHHHHHHHHHc-CCCEEEECHHHHHHHhh
Confidence 37899999999998 99999998777766654
No 42
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.18 E-value=0.069 Score=46.52 Aligned_cols=107 Identities=24% Similarity=0.247 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
+..+..+...++|+.+| .+.++. ++.. .+..+++. ...++++..| . +..+..+|||+|-+-...
T Consensus 13 ~~~~~l~~l~~~g~~~i-~lr~~~---~~~~~~~~~~~~i~~~~~~~~~~l~~~~----~--~~~a~~~g~~~vh~~~~~ 82 (196)
T cd00564 13 DLLEVVEAALKGGVTLV-QLREKD---LSARELLELARALRELCRKYGVPLIIND----R--VDLALAVGADGVHLGQDD 82 (196)
T ss_pred hHHHHHHHHHhcCCCEE-EEeCCC---CCHHHHHHHHHHHHHHHHHhCCeEEEeC----h--HHHHHHcCCCEEecCccc
Confidence 56677778888899888 444432 3433 23344332 1356777655 2 445889999988666544
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCC
Q 018446 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN 319 (355)
Q Consensus 272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRd 319 (355)
+....+ +.....++.+-+.+||.+|+.++... |++.|.+....
T Consensus 83 ~~~~~~----~~~~~~~~~~g~~~~t~~~~~~~~~~-g~d~i~~~~~~ 125 (196)
T cd00564 83 LPVAEA----RALLGPDLIIGVSTHSLEEALRAEEL-GADYVGFGPVF 125 (196)
T ss_pred CCHHHH----HHHcCCCCEEEeeCCCHHHHHHHhhc-CCCEEEECCcc
Confidence 433232 33445688888899999999999986 99999987663
No 43
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.13 E-value=0.086 Score=54.21 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=97.9
Q ss_pred ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC
Q 018446 161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240 (355)
Q Consensus 161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l 240 (355)
+.|-.+.+.. .+++.|.|-+- + ..+-.+.++...++||+.|.|-+-..+-..-.+.++.+|+...++
T Consensus 129 ~~~~~a~~d~---~~~l~v~aavg---~-------~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 129 EDFPNACKDL---NNKLRVGAAVS---I-------DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred hhcchhhhhh---hcCeEEEEEEe---C-------CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 3344455543 26677877772 1 112347788888999999998554432222235677887753478
Q ss_pred CeeccccccCHHHHHHHHHcCCcchHHHHhc----------C---CHHHHH---HHHHHHHHcCCcEEEE--eCCHHHHH
Q 018446 241 PLLCKEFIVDAWQIYYARTKGADAVLLIAAV----------L---PDLDIR---YMTKICKLLGLTALVE--VHDEREMD 302 (355)
Q Consensus 241 PVLrKDFIIdpyQI~eAr~~GADAVLLIaai----------L---~~~~L~---~L~~~A~~LGLeaLVE--VH~~eELe 302 (355)
+|+.+| +.+.-+...+..+|||+|-. .+ + +..++. .+.++++..++..+.| +++..++-
T Consensus 196 ~vi~g~-V~T~e~a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 196 DLIAGN-IVTKEAALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred cEEEEe-cCCHHHHHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 888887 56888888999999999862 22 1 112444 4456667789999998 89999999
Q ss_pred HHhccCCCeEEEeeCCCCC
Q 018446 303 RVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 303 rAl~l~ga~iIGINNRdL~ 321 (355)
+|+.+ ||+-+.|-+.=-.
T Consensus 273 KALal-GA~aVmvGs~~ag 290 (404)
T PRK06843 273 KAIAA-GADSVMIGNLFAG 290 (404)
T ss_pred HHHHc-CCCEEEEcceeee
Confidence 99997 9988777655433
No 44
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.10 E-value=0.1 Score=48.56 Aligned_cols=136 Identities=21% Similarity=0.196 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHcCceEEEEeccC-CC-CCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDE-KY-FKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~-~f-F~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
.||.++|+.|++.|+..|.+.-=. .. =+| .++.+..+++. +++||..-==|-+.-++......|||+|.+-.+++.
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 499999999999999966654211 11 111 35667888875 789998877777888888888899999987777765
Q ss_pred HHHHHHHHHHHHHcCCcEEE-E-----------------------eCCHHHHHHHhccCCCeEEEeeCCCCC--ccccCh
Q 018446 274 DLDIRYMTKICKLLGLTALV-E-----------------------VHDEREMDRVLGIEGIELIGINNRNLE--TFEVDN 327 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLV-E-----------------------VH~~eELerAl~l~ga~iIGINNRdL~--TfevDl 327 (355)
+. .-+.++++.+|-+.++ - ....+.++.+.+. |++.|-+.+++-. .-..|.
T Consensus 106 ~p--~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-G~d~i~v~~i~~~g~~~g~~~ 182 (243)
T cd04731 106 NP--ELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTKKGYDL 182 (243)
T ss_pred Ch--HHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC-CCCEEEEeccCCCCCCCCCCH
Confidence 32 3355566666654222 1 1223344555564 8998888776532 123466
Q ss_pred hhHHhhhcc
Q 018446 328 SNTKKLLEG 336 (355)
Q Consensus 328 ~~t~~L~~~ 336 (355)
+...++...
T Consensus 183 ~~i~~i~~~ 191 (243)
T cd04731 183 ELIRAVSSA 191 (243)
T ss_pred HHHHHHHhh
Confidence 666666543
No 45
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.92 E-value=0.071 Score=52.62 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=88.6
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC----------CCCCCCHHHHHHHHhcCCCCCeeccc-
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKE- 246 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~----------~fF~GS~edL~~VR~a~v~lPVLrKD- 246 (355)
.+|+.+--.++ . .+++.++++..+..+|.|+-+-..+ +-|.+-++.|+.+++. +++||..|.
T Consensus 114 p~~~Nl~~~~~-----~-~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~-~~vPVivK~~ 186 (326)
T cd02811 114 PLIANLGAVQL-----N-GYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA-LSVPVIVKEV 186 (326)
T ss_pred eEEeecCcccc-----C-CCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEec
Confidence 57776642222 1 3578888888888888988886532 1244445788999985 899999994
Q ss_pred -cccCHHHHHHHHHcCCcchHHHH----------------------hcC---CHHHHHHHHHHHHHc-CCcEEE--EeCC
Q 018446 247 -FIVDAWQIYYARTKGADAVLLIA----------------------AVL---PDLDIRYMTKICKLL-GLTALV--EVHD 297 (355)
Q Consensus 247 -FIIdpyQI~eAr~~GADAVLLIa----------------------aiL---~~~~L~~L~~~A~~L-GLeaLV--EVH~ 297 (355)
|.....-......+|+|+|.+-- ..+ .-.....+.+..... ++..+. -++|
T Consensus 187 g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~ 266 (326)
T cd02811 187 GFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN 266 (326)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 45666667777789999988411 000 001233444444444 554444 4799
Q ss_pred HHHHHHHhccCCCeEEEeeC
Q 018446 298 EREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 298 ~eELerAl~l~ga~iIGINN 317 (355)
..++.+++.+ ||+.+||-.
T Consensus 267 ~~dv~kal~l-GAd~V~i~~ 285 (326)
T cd02811 267 GLDIAKALAL-GADLVGMAG 285 (326)
T ss_pred HHHHHHHHHh-CCCEEEEcH
Confidence 9999999997 999999976
No 46
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.88 E-value=0.2 Score=46.45 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCC-CCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEK-YFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~-fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
-||.++|+.|.++|+..|-+. |.. ...|. .+.+..+++. +++|+.--==|-+.-++..+..+|||.|.+=...+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEE-echhhhcCCcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 389999999999999999555 544 44454 4555555553 67887763333456778888899999998877776
Q ss_pred CHHHHHHHHHHHHHcCCcEE---EEeC---------------CHHHHHHHhccCCCeEEEeeCCCCC--ccccChhhHHh
Q 018446 273 PDLDIRYMTKICKLLGLTAL---VEVH---------------DEREMDRVLGIEGIELIGINNRNLE--TFEVDNSNTKK 332 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaL---VEVH---------------~~eELerAl~l~ga~iIGINNRdL~--TfevDl~~t~~ 332 (355)
.+ ...+.++++.+|=+.+ +.++ +..|+-+.+...|+.-|-+.+++-. .-..|++...+
T Consensus 110 ~~--~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~ 187 (241)
T PRK13585 110 EN--PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKE 187 (241)
T ss_pred hC--hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHH
Confidence 43 3345666777664444 2222 4555544443348887778777432 23356777777
Q ss_pred hhcc
Q 018446 333 LLEG 336 (355)
Q Consensus 333 L~~~ 336 (355)
+.+.
T Consensus 188 i~~~ 191 (241)
T PRK13585 188 LVDS 191 (241)
T ss_pred HHHh
Confidence 7654
No 47
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.66 E-value=0.041 Score=54.94 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=50.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
.-|+.++++.|.++|+++||..+.++.|.+.++.+.+. |++++=|-.+|+..+..
T Consensus 71 ~~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KIaS~~~~n~pL 125 (329)
T TIGR03569 71 LELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDL-GVPRFKIPSGEITNAPL 125 (329)
T ss_pred hCCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCEEEECcccccCHHH
Confidence 34888999999999999999999999999999999887 89999999999988653
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.58 E-value=0.15 Score=48.78 Aligned_cols=132 Identities=23% Similarity=0.343 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHcCceEEEEeccC-------CCCCCCHHH----HHHHHhcCCCCCeecccccc---CHHHHHH-HHHcCC
Q 018446 198 DPVEIARSYEKGGAACLSILTDE-------KYFKGSFEN----LEAVRSAGVKCPLLCKEFIV---DAWQIYY-ARTKGA 262 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~-------~fF~GS~ed----L~~VR~a~v~lPVLrKDFII---dpyQI~e-Ar~~GA 262 (355)
+..+.|+..+++|+++|-+..-- ..|+++.+. ++.+|++ +++||..| +-. +..++.+ +..+||
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vK-l~~~~~~~~~~a~~~~~~G~ 180 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVK-LTPNVTDIVEIARAAEEAGA 180 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEE-eCCCchhHHHHHHHHHHcCC
Confidence 56677888888899999885321 245566654 5566775 79999998 222 2335554 667999
Q ss_pred cchHHHHh--------------------cCC-----HHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446 263 DAVLLIAA--------------------VLP-----DLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 263 DAVLLIaa--------------------iL~-----~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGI 315 (355)
|+|.++-. -++ +-.+..+.++.+.+++..+. -|+|.+++.+++.+ ||+.|+|
T Consensus 181 d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~-GAd~V~i 259 (296)
T cd04740 181 DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMA-GASAVQV 259 (296)
T ss_pred CEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEE
Confidence 99876411 111 11344555555666765554 47999999999986 9999999
Q ss_pred eCCCCCccccChhhHHhhhcc
Q 018446 316 NNRNLETFEVDNSNTKKLLEG 336 (355)
Q Consensus 316 NNRdL~TfevDl~~t~~L~~~ 336 (355)
-.--+. |+....++...
T Consensus 260 gra~l~----~p~~~~~i~~~ 276 (296)
T cd04740 260 GTANFV----DPEAFKEIIEG 276 (296)
T ss_pred chhhhc----ChHHHHHHHHH
Confidence 754333 55556665543
No 49
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.56 E-value=0.081 Score=49.62 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=90.6
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA 257 (355)
.||+=+.-.+|. +..+++++..++|..+|=|-... .+.++-++.+++. ..==++-==-|+++-|...|
T Consensus 9 ~liaVlr~~~~e--------~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~-~~~~~vGAGTVl~~~~a~~a 76 (204)
T TIGR01182 9 KIVPVIRIDDVD--------DALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKE-VPDALIGAGTVLNPEQLRQA 76 (204)
T ss_pred CEEEEEecCCHH--------HHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHH
Confidence 366666444443 56789999999999999886644 4778888888863 21112223346899999999
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN 316 (355)
..+||+-++ ++.--.+++++|++.|+-.+-=+.|..|+..|++. |+++|=+-
T Consensus 77 ~~aGA~Fiv------sP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-Ga~~vKlF 128 (204)
T TIGR01182 77 VDAGAQFIV------SPGLTPELAKHAQDHGIPIIPGVATPSEIMLALEL-GITALKLF 128 (204)
T ss_pred HHcCCCEEE------CCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHC-CCCEEEEC
Confidence 999999872 23233478999999999999999999999999997 99887554
No 50
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=95.55 E-value=0.018 Score=51.50 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCH-HHHH---HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSF-ENLE---AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~-edL~---~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
..+..+.-.++|++++ .|.++..-...+ +.+. .+++. ...|++..|+ +..|..+|||+|-|-..-++.
T Consensus 15 ~~~~~~~~~~~g~~~v-~lR~~~~~~~~~~~~~~~l~~~~~~-~~~~l~i~~~------~~la~~~g~~GvHl~~~~~~~ 86 (196)
T TIGR00693 15 LLNRVEAALKGGVTLV-QLRDKGSNTRERLALAEKLQELCRR-YGVPFIVNDR------VDLALALGADGVHLGQDDLPA 86 (196)
T ss_pred HHHHHHHHHhcCCCEE-EEecCCCCHHHHHHHHHHHHHHHHH-hCCeEEEECH------HHHHHHcCCCEEecCcccCCH
Confidence 4455555556789888 666543211111 1222 22222 3678887774 356889999999776555554
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
...+.++ ..+.-.-+++||.+|+.+|.+. |++.|++-+-
T Consensus 87 ~~~r~~~----~~~~~ig~s~h~~~e~~~a~~~-g~dyi~~~~v 125 (196)
T TIGR00693 87 SEARALL----GPDKIIGVSTHNLEELAEAEAE-GADYIGFGPI 125 (196)
T ss_pred HHHHHhc----CCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCc
Confidence 4433332 3456777999999999999986 9999997554
No 51
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.52 E-value=0.045 Score=54.65 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
-|+.++..+|.++|+++||+.+.++.|.+.++.+..+ |++++=|-.+|+..+.
T Consensus 73 el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KI~S~~~~n~~ 125 (327)
T TIGR03586 73 HTPWEWHKELFERAKELGLTIFSSPFDETAVDFLESL-DVPAYKIASFEITDLP 125 (327)
T ss_pred hCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHc-CCCEEEECCccccCHH
Confidence 4788889999999999999999999999999999887 8999999999998765
No 52
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.51 E-value=0.18 Score=51.13 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHcCceEEEEec---cCCCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh-
Q 018446 197 FDPVEIARSYEKGGAACLSILT---DEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA- 270 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa- 270 (355)
.+..++++..+++|+++|.|-- |..|.++ +.+++.++.+. .++||+..+ +.++-...++..+|||+|..=..
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIaG~-V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIVGG-CVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEEECCCC
Confidence 3677999999999999999942 6666553 58888888775 799999977 78888888899999999943100
Q ss_pred --------cCC--HHHHHHHHHHH---HH----c---CCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446 271 --------VLP--DLDIRYMTKIC---KL----L---GLTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFEVD 326 (355)
Q Consensus 271 --------iL~--~~~L~~L~~~A---~~----L---GLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~TfevD 326 (355)
.++ -.++..+.+.+ +. + ++..+.. +++..++-+|+.+ ||+-+.+-.+=+.|-|-.
T Consensus 219 Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlal-GAd~Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 219 GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIAC-GADAVMLGSPLARAAEAP 295 (368)
T ss_pred CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHc-CCCeecccchhcccccCC
Confidence 121 12444444443 22 2 4666665 8999999999997 999999988877776644
No 53
>PLN02535 glycolate oxidase
Probab=95.50 E-value=0.07 Score=54.10 Aligned_cols=96 Identities=16% Similarity=0.284 Sum_probs=75.4
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcC--CHHHHHHHHHHHHHc--CCcEEEE--eC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLL--GLTALVE--VH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL--~~~~L~~L~~~A~~L--GLeaLVE--VH 296 (355)
++++++.+|+. .++||+.|+. +++.....|..+|+|+|.+.- ..+ +...+..|.++...+ .+..++. |+
T Consensus 211 tW~~i~~lr~~-~~~PvivKgV-~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr 288 (364)
T PLN02535 211 SWKDIEWLRSI-TNLPILIKGV-LTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVR 288 (364)
T ss_pred CHHHHHHHHhc-cCCCEEEecC-CCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCC
Confidence 58999999995 8999999998 889999999999999996531 011 122355566666555 4777765 89
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
+-.++-+||.+ ||+.++|-.--|..+.
T Consensus 289 ~g~Dv~KALal-GA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 289 RGTDVFKALAL-GAQAVLVGRPVIYGLA 315 (364)
T ss_pred CHHHHHHHHHc-CCCEEEECHHHHhhhh
Confidence 99999999998 9999999888777654
No 54
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.49 E-value=0.14 Score=50.61 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH------
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------ 268 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI------ 268 (355)
+-.+.++...++|+.+|-|-+- ++.+ .+.++.+|++..++||.. -.+.++.+...+..+|||+|..=
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~---~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSA---HGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGIGPGSI 169 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECC---CCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECCCCCcC
Confidence 3457788888899999887652 2222 566777887533488887 67799999999999999998741
Q ss_pred --Hhc-----CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 269 --AAV-----LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 269 --aai-----L~~-~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
... .+. ..+.+..+.++..++..+. -+.+..++.+|+.+ ||+.+++-.+=+.
T Consensus 170 ~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~-GA~~VmiGt~fa~ 231 (325)
T cd00381 170 CTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA-GADAVMLGSLLAG 231 (325)
T ss_pred cccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc-CCCEEEecchhcc
Confidence 010 011 2345566677778898888 79999999999997 9999888544433
No 55
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.38 E-value=0.054 Score=52.89 Aligned_cols=78 Identities=26% Similarity=0.226 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
-||+ +|+..++.|++|+-.|--|---+= +..+|+.+++. .++||++-==|=.|-++++|..+|||+||+--+|..
T Consensus 146 ~D~v-~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 146 ADPM-LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred CCHH-HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 3776 999999999999999887752221 36889999985 789999999999999999999999999999887774
Q ss_pred HHH
Q 018446 274 DLD 276 (355)
Q Consensus 274 ~~~ 276 (355)
-++
T Consensus 224 A~d 226 (267)
T CHL00162 224 AKN 226 (267)
T ss_pred CCC
Confidence 433
No 56
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.20 E-value=0.48 Score=44.59 Aligned_cols=136 Identities=20% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCC---CCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEK---YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~---fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
.-||.++|+.|++.||..|.|.-=.. .=+=+++.++.+++. +++||..-==|-+.-++.++...|||+|.+=...+
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 45999999999999999988753221 122345677777775 78998887777789999999999999997766666
Q ss_pred CHHHHHHHHHHHHHcCCcEE---EEe----------------------CCHHHHHHHhccCCCeEEEeeCCCC--Ccccc
Q 018446 273 PDLDIRYMTKICKLLGLTAL---VEV----------------------HDEREMDRVLGIEGIELIGINNRNL--ETFEV 325 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaL---VEV----------------------H~~eELerAl~l~ga~iIGINNRdL--~Tfev 325 (355)
.+ ...+.++++.+|=+.+ +-+ ...+.++++..+ |++-|-+++.+- ..-..
T Consensus 108 ~~--p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~ii~~~i~~~g~~~g~ 184 (253)
T PRK02083 108 AN--PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTKNGY 184 (253)
T ss_pred hC--cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHc-CCCEEEEcCCcCCCCCCCc
Confidence 53 3445566777662211 111 113344566665 888777766332 22334
Q ss_pred ChhhHHhhhc
Q 018446 326 DNSNTKKLLE 335 (355)
Q Consensus 326 Dl~~t~~L~~ 335 (355)
|++...++..
T Consensus 185 d~~~i~~~~~ 194 (253)
T PRK02083 185 DLELTRAVSD 194 (253)
T ss_pred CHHHHHHHHh
Confidence 6665566654
No 57
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.16 E-value=0.061 Score=51.31 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCC----CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G----S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
.+..++|+..+++||++|.| |. .+.| +++.+..++++ ++ +||+-.==|.+.-+..+...+|||+|.+=-++
T Consensus 148 ~~~~~~a~~l~~aGad~i~V--d~-~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHV--DA-MYPGKPYADMDLLKILSEE-FNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred chHHHHHHHHHHcCCCEEEE--ee-CCCCCchhhHHHHHHHHHh-cCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 46789999999999999999 44 4455 48889999986 74 99999999999999999999999999876565
Q ss_pred CCH
Q 018446 272 LPD 274 (355)
Q Consensus 272 L~~ 274 (355)
|..
T Consensus 224 l~~ 226 (231)
T TIGR00736 224 LKG 226 (231)
T ss_pred ccC
Confidence 543
No 58
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.14 E-value=0.2 Score=52.76 Aligned_cols=127 Identities=11% Similarity=0.112 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH-------
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------- 268 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI------- 268 (355)
..|..+-+++..++|++.|.|-+-..+-...++.++.+|+...+++|+++|. .+.-+-..|..+|||+|..=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g~G~~~ 324 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMGSGSIC 324 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCCCCccc
Confidence 3466789999999999999998743232333478999987534689999986 67888999999999998541
Q ss_pred -Hhc---C---CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 269 -AAV---L---PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 269 -aai---L---~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
-.. . ....+..+.++++..++.++.+ +++..++.+||.+ ||+-+.+-.+=..|-+
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~-GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTL-GASTVMMGSFLAGTTE 388 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEchhhccccc
Confidence 000 0 0124555778888889998888 8999999999997 9998887766554443
No 59
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.13 E-value=0.18 Score=45.73 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=80.6
Q ss_pred cCCCCCCCCCC-CCHHHHHHHHHHcCceEEEEec-cCCCCCC---CHHHHHHHHhcCCC----CCeeccccccCHHHHHH
Q 018446 186 ASPSRGILRED-FDPVEIARSYEKGGAACLSILT-DEKYFKG---SFENLEAVRSAGVK----CPLLCKEFIVDAWQIYY 256 (355)
Q Consensus 186 aSPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~G---S~edL~~VR~a~v~----lPVLrKDFIIdpyQI~e 256 (355)
-||| +..-| ....+.++...++|+.+|=+-. |..|.+. .++.++.+++. ++ ++++..| ....+..
T Consensus 6 ~~~s--~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v~l~v~d---~~~~i~~ 79 (220)
T PRK05581 6 IAPS--ILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKV-TKLPLDVHLMVEN---PDRYVPD 79 (220)
T ss_pred EEcc--hhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHH
Confidence 4565 23333 2345678888999999998832 3344333 57888888864 33 2333343 2235677
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccCCCeEEEeeCCC
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGINNRN 319 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~ga~iIGINNRd 319 (355)
+..+|+|.|.+.... .+.....++.++..|+...+-+ |+..|..+.+. .+++.|++-..+
T Consensus 80 ~~~~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~-~~~d~i~~~~~~ 141 (220)
T PRK05581 80 FAKAGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVL-DLLDLVLLMSVN 141 (220)
T ss_pred HHHcCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHH-hhCCEEEEEEEC
Confidence 789999998777654 3466777899999999988888 45555555443 246766665443
No 60
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.99 E-value=0.11 Score=49.90 Aligned_cols=91 Identities=25% Similarity=0.209 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHcCceEEEEec-------c-----------CCCCCCC------HHHHHHHHhcCCCCCeeccccccCHHH
Q 018446 198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKGS------FENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT-------D-----------~~fF~GS------~edL~~VR~a~v~lPVLrKDFIIdpyQ 253 (355)
|..++|+..+++|+++|.|-. | ...+.|. ++.+..++++ +++||+.--=|.++-+
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~d 248 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFED 248 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHHH
Confidence 678999999999999998741 1 1122332 4677888885 8999999999999999
Q ss_pred HHHHHHcCCcchHHHHhcCCHHH-----HHHHHHHHHHcCC
Q 018446 254 IYYARTKGADAVLLIAAVLPDLD-----IRYMTKICKLLGL 289 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL~~~~-----L~~L~~~A~~LGL 289 (355)
+.+....|||+|.+--++|.+-. .++|.++....|.
T Consensus 249 a~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 249 ALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 99999999999998777764422 2334444445554
No 61
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.88 E-value=0.064 Score=50.67 Aligned_cols=116 Identities=16% Similarity=0.284 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCceEEEEe-------ccCCCCC--------------CCHHHHHHHHhcCCCCCeec--c-ccccC---H
Q 018446 199 PVEIARSYEKGGAACLSIL-------TDEKYFK--------------GSFENLEAVRSAGVKCPLLC--K-EFIVD---A 251 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVL-------TD~~fF~--------------GS~edL~~VR~a~v~lPVLr--K-DFIId---p 251 (355)
-.+.++.++++||++|=+- .|..+-+ -.++.+..+|+. +++|+.- + +-+.. +
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~~~G~~ 94 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPILQYGLE 94 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHHHhCHH
Confidence 3467778888888887764 3333433 457788888875 6889542 2 22111 4
Q ss_pred HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhc-cCCC-eEEEeeC
Q 018446 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLG-IEGI-ELIGINN 317 (355)
Q Consensus 252 yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~-l~ga-~iIGINN 317 (355)
.-+.++..+|||+|++. =|+.+++.++++.|+++||++.+=+. +.+.++..++ ..|. -++++|.
T Consensus 95 ~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g 163 (242)
T cd04724 95 RFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred HHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence 45888999999998774 23557899999999999999876443 3566777776 2232 3445554
No 62
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.84 E-value=0.27 Score=46.70 Aligned_cols=131 Identities=27% Similarity=0.365 Sum_probs=84.5
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC------CH----HHHHHHHhcCCCCCeecccc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKG------SF----ENLEAVRSAGVKCPLLCKEF 247 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G------S~----edL~~VR~a~v~lPVLrKDF 247 (355)
.+|+-+-..+|. +..+.|+..++.||++|-+..--....+ +. +-++.+|++ +++||..|=-
T Consensus 100 pvi~si~g~~~~--------~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~ 170 (289)
T cd02810 100 PLIASVGGSSKE--------DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLS 170 (289)
T ss_pred eEEEEeccCCHH--------HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeC
Confidence 467666444442 4567788888889999998764333322 22 346777875 7899998822
Q ss_pred -ccC---HHHH-HHHHHcCCcchHHHHhcC--------------------C-----HHHHHHHHHHHHHc--CCcEEE--
Q 018446 248 -IVD---AWQI-YYARTKGADAVLLIAAVL--------------------P-----DLDIRYMTKICKLL--GLTALV-- 293 (355)
Q Consensus 248 -IId---pyQI-~eAr~~GADAVLLIaaiL--------------------~-----~~~L~~L~~~A~~L--GLeaLV-- 293 (355)
.++ ..++ ..+..+|||+|.++-... + +-.+..+.++...+ ++..+.
T Consensus 171 ~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~G 250 (289)
T cd02810 171 PYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVG 250 (289)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 223 2333 345678999999864321 1 11345555666666 555553
Q ss_pred EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 294 EVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 294 EVH~~eELerAl~l~ga~iIGINNR 318 (355)
-|+|.+++.+++.+ ||+.|+|-..
T Consensus 251 GI~~~~da~~~l~~-GAd~V~vg~a 274 (289)
T cd02810 251 GIDSGEDVLEMLMA-GASAVQVATA 274 (289)
T ss_pred CCCCHHHHHHHHHc-CccHheEcHH
Confidence 48999999999986 9999988543
No 63
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.82 E-value=0.21 Score=47.29 Aligned_cols=95 Identities=28% Similarity=0.312 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHcCceEEEE--eccCCCCCC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHh
Q 018446 195 EDFDPVEIARSYEKGGAACLSI--LTDEKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAA 270 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISV--LTD~~fF~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaa 270 (355)
...++.++++.+++.|++.|.| .+-..+.+| .++.+..+++. +++||+.--=|-++-.+.++...| ||+|++-.+
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 3678999999999999999998 444333333 36778899886 899999999899999999999988 999877666
Q ss_pred cCC-HHHHHHHHHHHHHcCCc
Q 018446 271 VLP-DLDIRYMTKICKLLGLT 290 (355)
Q Consensus 271 iL~-~~~L~~L~~~A~~LGLe 290 (355)
+.. .-.+.++.+++++.|..
T Consensus 232 ~~~~~~~~~~~~~~~~~~gi~ 252 (254)
T TIGR00735 232 FHYREITIGEVKEYLAERGIP 252 (254)
T ss_pred HhCCCCCHHHHHHHHHHCCCc
Confidence 553 44688888888888864
No 64
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=94.58 E-value=0.14 Score=49.64 Aligned_cols=73 Identities=27% Similarity=0.265 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
||+ +|+..++.|++|+-.|--|---+ -+...|+.+++. .++||+-.==|=.|-+..+|-++||||||+..++-
T Consensus 133 D~v-~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 133 DPV-LAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -HH-HHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CHH-HHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 776 99999999999999998775211 136888999875 79999987777789999999999999999966654
No 65
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.57 E-value=0.23 Score=49.70 Aligned_cols=136 Identities=19% Similarity=0.271 Sum_probs=91.8
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC----------CCCCCCHHHHHHHHhcCCCCCeecccc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKEF 247 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~----------~fF~GS~edL~~VR~a~v~lPVLrKDF 247 (355)
.+|+-+---.+. ..++.++.+..+..+|.|+.+-..+ .-|.+-++.++.+|+. +++||..|-.
T Consensus 122 p~~aNl~~~~~~------~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~~ 194 (352)
T PRK05437 122 LLFANLGAVQLY------GYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA-LPVPVIVKEV 194 (352)
T ss_pred eEEeecCccccC------CCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh-hCCCEEEEeC
Confidence 577777332221 4578888888888889998887522 1245555789999985 8999999954
Q ss_pred --ccCHHHHHHHHHcCCcchHHHHh------------cC-----------CHHHHHHHHHHHHHc-CCcEEE--EeCCHH
Q 018446 248 --IVDAWQIYYARTKGADAVLLIAA------------VL-----------PDLDIRYMTKICKLL-GLTALV--EVHDER 299 (355)
Q Consensus 248 --IIdpyQI~eAr~~GADAVLLIaa------------iL-----------~~~~L~~L~~~A~~L-GLeaLV--EVH~~e 299 (355)
.....-......+|+|+|.+--. .. .-.....|.+..+.+ ++..+. -|+|..
T Consensus 195 g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~ 274 (352)
T PRK05437 195 GFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGL 274 (352)
T ss_pred CCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHH
Confidence 46666666677789999887221 00 001233444455543 554444 489999
Q ss_pred HHHHHhccCCCeEEEeeCCCCC
Q 018446 300 EMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 300 ELerAl~l~ga~iIGINNRdL~ 321 (355)
++.+++.+ ||+.++|-.--|.
T Consensus 275 dv~k~l~~-GAd~v~ig~~~l~ 295 (352)
T PRK05437 275 DIAKALAL-GADAVGMAGPFLK 295 (352)
T ss_pred HHHHHHHc-CCCEEEEhHHHHH
Confidence 99999997 9999999775444
No 66
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.53 E-value=0.14 Score=49.68 Aligned_cols=75 Identities=25% Similarity=0.211 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHcCceEEEEe-----------------------ccCCCCCCC------HHHHHHHHhcCC--CCCeeccc
Q 018446 198 DPVEIARSYEKGGAACLSIL-----------------------TDEKYFKGS------FENLEAVRSAGV--KCPLLCKE 246 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL-----------------------TD~~fF~GS------~edL~~VR~a~v--~lPVLrKD 246 (355)
+..++|+..+++||++|++- |....|.|. ++.+..++++ + ++||+--=
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~-~~~~ipIig~G 259 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA-PEPGLPISGIG 259 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh-cCCCCcEEEEC
Confidence 67899999999999999841 112234442 7888999886 7 89999998
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
=|.+..++++...+|||+|.+--+++-
T Consensus 260 GI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 260 GIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred CCCCHHHHHHHHHcCCChheEceeecc
Confidence 999999999999999999998766654
No 67
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=94.48 E-value=0.17 Score=46.59 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHcCceEEEEe---ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 196 DFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVL---TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
..+|.++++.|.+.||+.|-+. -+...++-+++.+..+++. +++||+.-==|-+.-++.++...|||+|++=-+++
T Consensus 144 ~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 144 EVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 4799999999999999987755 4555666678899999985 89999988888889999999999999988755554
Q ss_pred C
Q 018446 273 P 273 (355)
Q Consensus 273 ~ 273 (355)
.
T Consensus 223 ~ 223 (230)
T TIGR00007 223 E 223 (230)
T ss_pred c
Confidence 3
No 68
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.46 E-value=0.26 Score=46.03 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=84.8
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA 257 (355)
.||+=+.-.++. +..++++++.++|..+|-|--... +.++-++.+++. ..==++===-+++.-|...|
T Consensus 9 ~iiaVir~~~~~--------~a~~~~~al~~gGi~~iEiT~~t~---~a~~~I~~l~~~-~p~~~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 9 KIIAVIRGDDPE--------DAVPIAEALIEGGIRAIEITLRTP---NALEAIEALRKE-FPDLLVGAGTVLTAEQAEAA 76 (196)
T ss_dssp SEEEEETTSSGG--------GHHHHHHHHHHTT--EEEEETTST---THHHHHHHHHHH-HTTSEEEEES--SHHHHHHH
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEecCCc---cHHHHHHHHHHH-CCCCeeEEEeccCHHHHHHH
Confidence 366666544443 678999999999999999876543 567888888764 21112222335799999999
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEe
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGI 315 (355)
..+||+-++-- .++ .+++++|+++|+-.+==|-|..|+..|+++ |++++=+
T Consensus 77 ~~aGA~FivSP--~~~----~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-G~~~vK~ 127 (196)
T PF01081_consen 77 IAAGAQFIVSP--GFD----PEVIEYAREYGIPYIPGVMTPTEIMQALEA-GADIVKL 127 (196)
T ss_dssp HHHT-SEEEES--S------HHHHHHHHHHTSEEEEEESSHHHHHHHHHT-T-SEEEE
T ss_pred HHcCCCEEECC--CCC----HHHHHHHHHcCCcccCCcCCHHHHHHHHHC-CCCEEEE
Confidence 99999975432 233 578999999999999999999999999997 9988765
No 69
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.40 E-value=0.33 Score=46.72 Aligned_cols=144 Identities=21% Similarity=0.327 Sum_probs=88.7
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcC-ceEEEEec-----cC--CCCCCCH----HHHHHHHhcCCCCCeecc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGG-AACLSILT-----DE--KYFKGSF----ENLEAVRSAGVKCPLLCK 245 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~G-AaaISVLT-----D~--~fF~GS~----edL~~VR~a~v~lPVLrK 245 (355)
.+|+-+-..+| -+..+.|+..+++| +++|=+.. .. ..+..+. +.++.||++ +++||..|
T Consensus 93 p~i~si~g~~~--------~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vK 163 (301)
T PRK07259 93 PIIANVAGSTE--------EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVK 163 (301)
T ss_pred cEEEEeccCCH--------HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEE
Confidence 47777743333 14567777888888 99997733 21 1233333 445667775 79999888
Q ss_pred ---ccccCHHHHHH-HHHcCCcchHHHHhc--------------------CC-----HHHHHHHHHHHHHcCCcEEE--E
Q 018446 246 ---EFIVDAWQIYY-ARTKGADAVLLIAAV--------------------LP-----DLDIRYMTKICKLLGLTALV--E 294 (355)
Q Consensus 246 ---DFIIdpyQI~e-Ar~~GADAVLLIaai--------------------L~-----~~~L~~L~~~A~~LGLeaLV--E 294 (355)
++- +..++.+ +..+|||+|.++-.. ++ +-.+..+.++.+.+++..+. -
T Consensus 164 l~~~~~-~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GG 242 (301)
T PRK07259 164 LTPNVT-DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGG 242 (301)
T ss_pred cCCCch-hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECC
Confidence 332 4455554 667899998663111 11 11345555566666765544 4
Q ss_pred eCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcc
Q 018446 295 VHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG 336 (355)
Q Consensus 295 VH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~ 336 (355)
|+|.+++++++.. ||+.|+|----+. |+....++...
T Consensus 243 I~~~~da~~~l~a-GAd~V~igr~ll~----~P~~~~~i~~~ 279 (301)
T PRK07259 243 ISSAEDAIEFIMA-GASAVQVGTANFY----DPYAFPKIIEG 279 (301)
T ss_pred CCCHHHHHHHHHc-CCCceeEcHHHhc----CcHHHHHHHHH
Confidence 7999999999985 9999998543332 45555555443
No 70
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=94.35 E-value=0.21 Score=49.52 Aligned_cols=117 Identities=15% Similarity=0.242 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCceEEEEecc--C--------CCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHcCCcchH
Q 018446 199 PVEIARSYEKGGAACLSILTD--E--------KYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVL 266 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD--~--------~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~GADAVL 266 (355)
+.++.+..+..+|.|+-+-.. + ..|.+-++.++.+|+. +++||..| -|.....-+.....+|+|+|-
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~ 208 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAID 208 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 555666555556666666542 1 1244445889999985 89999999 445677677777889999998
Q ss_pred HHHhc------------C-----------CHHHHHHHHHHHH-HcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeC
Q 018446 267 LIAAV------------L-----------PDLDIRYMTKICK-LLGLTALV--EVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 267 LIaai------------L-----------~~~~L~~L~~~A~-~LGLeaLV--EVH~~eELerAl~l~ga~iIGINN 317 (355)
+--+- . .-.....+.+... ..++..+. -++|..++.+++.+ ||+.+|+-.
T Consensus 209 Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLal-GAd~V~igr 284 (333)
T TIGR02151 209 VAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIAL-GADAVGMAR 284 (333)
T ss_pred ECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHh-CCCeehhhH
Confidence 85421 0 0001123333332 23444333 47899999999997 999999943
No 71
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.33 E-value=1.4 Score=40.75 Aligned_cols=136 Identities=22% Similarity=0.185 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCC----CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF----~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
..||.++|+.|.+.|+..|-| ||-.-= +=+++.++.+++. +++||.---=|=+.-++.+....|||.|.+-.+.
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i-~dl~~~~~~~~~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIV-LDIDASKRGREPLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEE-EeCCCcccCCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 449999999999999987655 443322 1246677888875 8899877666666778888888999999998888
Q ss_pred CCHHHHHHHHHHHHHcCCcEEE-EeC-----------------------C-HHHHHHHhccCCCeEEEeeCCCCC--ccc
Q 018446 272 LPDLDIRYMTKICKLLGLTALV-EVH-----------------------D-EREMDRVLGIEGIELIGINNRNLE--TFE 324 (355)
Q Consensus 272 L~~~~L~~L~~~A~~LGLeaLV-EVH-----------------------~-~eELerAl~l~ga~iIGINNRdL~--Tfe 324 (355)
|.+.+ .+.++.+..|=+.++ -+. + .+.++++.+. |++-|-|.+++-. .-.
T Consensus 107 l~~~~--~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~i~~i~~~g~~~g 183 (232)
T TIGR03572 107 LENPD--LIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQL-GAGEILLNSIDRDGTMKG 183 (232)
T ss_pred hcCHH--HHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHc-CCCEEEEeCCCccCCcCC
Confidence 87533 333444544433111 111 1 2333444454 8888888885442 334
Q ss_pred cChhhHHhhhcc
Q 018446 325 VDNSNTKKLLEG 336 (355)
Q Consensus 325 vDl~~t~~L~~~ 336 (355)
.|++...++.+.
T Consensus 184 ~~~~~~~~i~~~ 195 (232)
T TIGR03572 184 YDLELIKTVSDA 195 (232)
T ss_pred CCHHHHHHHHhh
Confidence 677777777654
No 72
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.32 E-value=0.3 Score=45.85 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L 277 (355)
+..+++++..++|..+|=|--.. .+.++-++.+++. ..=-++===-++++-|..+|..+||+-++ ++.--
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~-~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv------SP~~~ 86 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAE-VEEAIVGAGTILNAKQFEDAAKAGSRFIV------SPGTT 86 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHH-CCCCEEeeEeCcCHHHHHHHHHcCCCEEE------CCCCC
Confidence 46689999999999999886543 3677888888764 21112223336899999999999999754 33333
Q ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 278 ~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGIN 316 (355)
.+++++|++.|+-.+==+-|..|+..|.++ |+++|=+.
T Consensus 87 ~~vi~~a~~~~i~~iPG~~TptEi~~A~~~-Ga~~vK~F 124 (201)
T PRK06015 87 QELLAAANDSDVPLLPGAATPSEVMALREE-GYTVLKFF 124 (201)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEEC
Confidence 478999999999999999999999999997 99887654
No 73
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.30 E-value=0.21 Score=50.70 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccc---cccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE---FIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKD---FIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
..++++...++|+..|-+-+ +..+....+.++.+++. ...|.+.-| ..+....+..|..+|||+|.+... -++.
T Consensus 18 ~~~~~~~~~~~Gv~~ie~g~-p~~~~~~~~~i~~l~~~-~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~-~~~~ 94 (430)
T PRK07028 18 AVEIAKEAVAGGADWIEAGT-PLIKSEGMNAIRTLRKN-FPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGL-ADDS 94 (430)
T ss_pred HHHHHHHHHhcCCcEEEeCC-HHHHHhhHHHHHHHHHH-CCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecC-CChH
Confidence 44566666678999986532 12122236667777664 334455444 223467999999999999876522 1233
Q ss_pred HHHHHHHHHHHcCCcEEEEe---CC-HHHHHHHhccCCCeEEEee
Q 018446 276 DIRYMTKICKLLGLTALVEV---HD-EREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLVEV---H~-~eELerAl~l~ga~iIGIN 316 (355)
.+.++++.|+++|+..++.+ ++ .+.+..+.++ |++.|++.
T Consensus 95 ~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~-GaD~I~~~ 138 (430)
T PRK07028 95 TIEDAVRAARKYGVRLMADLINVPDPVKRAVELEEL-GVDYINVH 138 (430)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc-CCCEEEEE
Confidence 56789999999999999853 34 3446667775 89999876
No 74
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.26 E-value=1.3 Score=41.90 Aligned_cols=137 Identities=23% Similarity=0.244 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
..||.++|+.|++.||..|.|.==..-..|. ++.+..++++ +++||..-==|-+.-++.+....|||.|.+=.+.+
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 4599999999999999998875222222233 4555667775 78999988888889999999999999998866666
Q ss_pred CHHHHHHHHHHHHHcCCc-EEEEeC-------------------------CHHHH-HHHhccCCCeEEEeeCCCCCc--c
Q 018446 273 PDLDIRYMTKICKLLGLT-ALVEVH-------------------------DEREM-DRVLGIEGIELIGINNRNLET--F 323 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLe-aLVEVH-------------------------~~eEL-erAl~l~ga~iIGINNRdL~T--f 323 (355)
.+ ...+.++++.+|=+ ..+-+. +..++ ++..+. |++.|-++.++-.- -
T Consensus 108 ~~--p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~-G~~~iivt~i~~~g~~~ 184 (254)
T TIGR00735 108 KN--PELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL-GAGEILLTSMDKDGTKS 184 (254)
T ss_pred hC--hHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc-CCCEEEEeCcCcccCCC
Confidence 53 23344556666622 222221 12233 444444 88888886654422 3
Q ss_pred ccChhhHHhhhcc
Q 018446 324 EVDNSNTKKLLEG 336 (355)
Q Consensus 324 evDl~~t~~L~~~ 336 (355)
..|++...++...
T Consensus 185 g~~~~~~~~i~~~ 197 (254)
T TIGR00735 185 GYDLELTKAVSEA 197 (254)
T ss_pred CCCHHHHHHHHHh
Confidence 4566666676554
No 75
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.22 E-value=0.39 Score=44.72 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=83.4
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeeccccccC--HHHHHHHHH
Q 018446 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKEFIVD--AWQIYYART 259 (355)
Q Consensus 187 SPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKDFIId--pyQI~eAr~ 259 (355)
+|| .++.+ .+..+..+...++|+..|=+---...|..++ +.++.+|+. ++.|+ -=+|++. ..-+..+..
T Consensus 11 ~~s--~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~~~-~vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 11 APS--ILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDAPL-DCHLMVTNPEDYVPDFAK 86 (229)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCCcE-EEEeccCCHHHHHHHHHH
Confidence 465 34444 4566778888899999987754444444332 578888875 66664 3456663 344778899
Q ss_pred cCCcchHHHHhc-CCHHHHHHHHHHHHHcCCcEEEEeC--CHHH-HHHHhccCCCeEEEe
Q 018446 260 KGADAVLLIAAV-LPDLDIRYMTKICKLLGLTALVEVH--DERE-MDRVLGIEGIELIGI 315 (355)
Q Consensus 260 ~GADAVLLIaai-L~~~~L~~L~~~A~~LGLeaLVEVH--~~eE-LerAl~l~ga~iIGI 315 (355)
+|||.|.+.+.. -. +.....++.++..|+.+=+-+| |..| ++..+...|++.|++
T Consensus 87 ~gad~v~vH~~q~~~-d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 87 AGASIFTFHIEQAST-IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLV 145 (229)
T ss_pred cCCCEEEEeeccccc-hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEE
Confidence 999999777662 33 3667888999999999999998 5444 444444211888855
No 76
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=94.17 E-value=0.19 Score=46.03 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 195 EDFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
...++.++++.|++.||+.|-+.. +..+-+-+++.+..+++. +++||+.-==|-++-++.++...|||+|++--++
T Consensus 144 ~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 144 SEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-TGIPVIASGGVSSLDDIKALKELGVAGVIVGKAL 222 (234)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHH
Confidence 356899999999999999998763 223333357888899885 8999998777777888999999999999887666
Q ss_pred CCH
Q 018446 272 LPD 274 (355)
Q Consensus 272 L~~ 274 (355)
+..
T Consensus 223 ~~~ 225 (234)
T cd04732 223 YEG 225 (234)
T ss_pred HcC
Confidence 654
No 77
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.16 E-value=0.17 Score=49.06 Aligned_cols=74 Identities=28% Similarity=0.269 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
||. .|+..++.|++++-.|-++---+- ..++++.+++. .++||++-==|-.|-|+++|..+|||+||+--+|..
T Consensus 133 d~~-~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 133 DPV-LAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CHH-HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 554 899999999999965445443111 37889999985 789999999999999999999999999999888887
No 78
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=94.12 E-value=0.22 Score=45.73 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHcCceEEEEe---ccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhc
Q 018446 196 DFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAV 271 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVL---TD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaai 271 (355)
+.++.++++.|++.||..|-+. -|..+++-+++.+..+++. +++||+.-==|-++-++.+....| ||+|++=-++
T Consensus 145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~ 223 (233)
T PRK00748 145 GVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAA-VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRAL 223 (233)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHH
Confidence 5789999999999999987666 3455677789999999985 889999998889999999999999 9999886666
Q ss_pred CCH
Q 018446 272 LPD 274 (355)
Q Consensus 272 L~~ 274 (355)
+..
T Consensus 224 ~~~ 226 (233)
T PRK00748 224 YEG 226 (233)
T ss_pred HcC
Confidence 543
No 79
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.10 E-value=0.43 Score=46.29 Aligned_cols=117 Identities=26% Similarity=0.321 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCC---CC-------CHH----HHHHHHhcCCCCCeecc---ccccCHHHHHH-HHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYF---KG-------SFE----NLEAVRSAGVKCPLLCK---EFIVDAWQIYY-ART 259 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF---~G-------S~e----dL~~VR~a~v~lPVLrK---DFIIdpyQI~e-Ar~ 259 (355)
|..+.|+..++.||++|-++.--... .| +.+ .++.+|+. +++||..| |+- +..++.+ +..
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~~~~~-~~~~~a~~~~~ 191 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLTPNIT-DIREIARAAKE 191 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECCCCch-hHHHHHHHHHH
Confidence 45667777777899999986653222 11 223 34455664 78999988 221 2235655 678
Q ss_pred cCCcchHHHHhcCC------------------------------HHHHHHHHHHHHHc--CCcEEE--EeCCHHHHHHHh
Q 018446 260 KGADAVLLIAAVLP------------------------------DLDIRYMTKICKLL--GLTALV--EVHDEREMDRVL 305 (355)
Q Consensus 260 ~GADAVLLIaaiL~------------------------------~~~L~~L~~~A~~L--GLeaLV--EVH~~eELerAl 305 (355)
+|||+|.++-.+.. +-.++.+.++++.+ .+..+. -|+|.+++.+.+
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l 271 (299)
T cd02940 192 GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFL 271 (299)
T ss_pred cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHH
Confidence 89999986532211 11266667777777 444433 589999999999
Q ss_pred ccCCCeEEEeeC
Q 018446 306 GIEGIELIGINN 317 (355)
Q Consensus 306 ~l~ga~iIGINN 317 (355)
.+ ||+.|.|--
T Consensus 272 ~a-GA~~V~i~t 282 (299)
T cd02940 272 LL-GASVVQVCT 282 (299)
T ss_pred Hc-CCChheEce
Confidence 85 999988743
No 80
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.10 E-value=0.68 Score=47.13 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=67.6
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALV--EVH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLV--EVH 296 (355)
++++|+.+|+. .++||+-|. |.++--...+..+|+|+|.+--. -| .+..+..|.+++...+ ++.++ -|+
T Consensus 216 ~w~~i~~l~~~-~~~PvivKG-v~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr 293 (367)
T TIGR02708 216 SPRDIEEIAGY-SGLPVYVKG-PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVR 293 (367)
T ss_pred CHHHHHHHHHh-cCCCEEEeC-CCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcC
Confidence 35899999985 899999997 55788888999999999854221 11 1123455666666665 77776 489
Q ss_pred CHHHHHHHhccCCCeEEEeeCC
Q 018446 297 DEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNR 318 (355)
+..++-+|+.+ ||+.+||-.=
T Consensus 294 ~g~Dv~KaLal-GAd~V~igR~ 314 (367)
T TIGR02708 294 RGQHVFKALAS-GADLVALGRP 314 (367)
T ss_pred CHHHHHHHHHc-CCCEEEEcHH
Confidence 99999999997 9999998654
No 81
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.08 E-value=0.29 Score=45.36 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 196 DFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
+.++.++++.|.+.|+..|-+.. |..+-+=+++.++.+++. +++||+.-==|-++-++.+....|||+|++--+++
T Consensus 148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 148 GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDS-VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY 226 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence 45899999999999999997642 222322346778999885 89999998888889999999999999999977777
Q ss_pred CH-HHHHHHHHH
Q 018446 273 PD-LDIRYMTKI 283 (355)
Q Consensus 273 ~~-~~L~~L~~~ 283 (355)
.. ..+.++..+
T Consensus 227 ~~~~~~~~~~~~ 238 (241)
T PRK13585 227 KGKFTLEEAIEA 238 (241)
T ss_pred cCCcCHHHHHHH
Confidence 54 234444444
No 82
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.04 E-value=0.21 Score=46.09 Aligned_cols=74 Identities=27% Similarity=0.211 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH-HHHcCCcchHHHHh
Q 018446 196 DFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY-ARTKGADAVLLIAA 270 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e-Ar~~GADAVLLIaa 270 (355)
..++.++++.+++.||++|-|.. +...-+-.++.+.++++. +++||+.--=|-++-++.+ ....|||+|.+--+
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDA-VSIPVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 46799999999999999999877 333333358888999985 8999999988889999999 88899999876433
No 83
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.16 Score=49.34 Aligned_cols=78 Identities=31% Similarity=0.269 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCC---CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~---GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
-||+ +|+.+++.|++|+-=|.-|---+ -+..+|+.+++. .++||+-.==|=.|-|..+|-++|+||||+..++-.
T Consensus 139 dD~v-~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~-a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 139 DDPV-LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEE-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred CCHH-HHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHh-CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhc
Confidence 3777 99999999999988777664211 236899999985 799999888888899999999999999999877765
Q ss_pred HHH
Q 018446 274 DLD 276 (355)
Q Consensus 274 ~~~ 276 (355)
-.+
T Consensus 217 A~D 219 (262)
T COG2022 217 AKD 219 (262)
T ss_pred cCC
Confidence 433
No 84
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.96 E-value=0.2 Score=48.76 Aligned_cols=74 Identities=28% Similarity=0.249 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
||+ .|+.+++.|+++|-.|-++---+- ..++++.+++. .++||++-==|-.|-|+++|..+|||+||+--+|..
T Consensus 133 d~~-~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 133 DPV-LAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CHH-HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 454 899999999999955444432111 36889999985 789999999999999999999999999999888886
No 85
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.87 E-value=0.42 Score=47.49 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHcCceEEEEeccC---------------CCCCC------CHHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDE---------------KYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~---------------~fF~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI 254 (355)
+..++|+..+++||++|.+-.-- ..+.| +++.+..++++ + ++||..-==|.++-++
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~-~~~~ipIig~GGI~s~eda 304 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKE-LGGRLPIIGVGGIDSAEDA 304 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence 47889999999999999986421 12233 46678888875 6 7999988889999999
Q ss_pred HHHHHcCCcchHHHHhcC
Q 018446 255 YYARTKGADAVLLIAAVL 272 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL 272 (355)
.+...+|||+|.+--+++
T Consensus 305 ~e~l~aGAd~V~v~~~~~ 322 (344)
T PRK05286 305 YEKIRAGASLVQIYSGLI 322 (344)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 999999999998877765
No 86
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=93.84 E-value=0.17 Score=50.94 Aligned_cols=91 Identities=18% Similarity=0.329 Sum_probs=67.7
Q ss_pred CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEEE--e
Q 018446 225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALVE--V 295 (355)
Q Consensus 225 GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLVE--V 295 (355)
.++++|+.+|+. .++||+-|.. +++..+..+..+|+|+|.+--. -| ....+..|.+....+| ++.++- |
T Consensus 212 ~~w~~i~~~~~~-~~~pvivKgv-~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGi 289 (356)
T PF01070_consen 212 LTWDDIEWIRKQ-WKLPVIVKGV-LSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGI 289 (356)
T ss_dssp -SHHHHHHHHHH-CSSEEEEEEE--SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS-
T ss_pred CCHHHHHHHhcc-cCCceEEEec-ccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCC
Confidence 567999999996 9999999999 9999999999999999876310 01 1224556666666666 888886 8
Q ss_pred CCHHHHHHHhccCCCeEEEeeCC
Q 018446 296 HDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 296 H~~eELerAl~l~ga~iIGINNR 318 (355)
.+-.|+-+|+.+ ||+.+||-.-
T Consensus 290 r~g~Dv~kalaL-GA~~v~igr~ 311 (356)
T PF01070_consen 290 RRGLDVAKALAL-GADAVGIGRP 311 (356)
T ss_dssp -SHHHHHHHHHT-T-SEEEESHH
T ss_pred CCHHHHHHHHHc-CCCeEEEccH
Confidence 999999999998 9999999643
No 87
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.83 E-value=0.053 Score=56.58 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=72.1
Q ss_pred EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEE-------EeccCCCCCCCHHHHHHHHhc-----CCCCCeeccc
Q 018446 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS-------ILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKE 246 (355)
Q Consensus 179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaIS-------VLTD~~fF~GS~edL~~VR~a-----~v~lPVLrKD 246 (355)
.|.+||+.-|..-++..+..-.+-|+...++||++|. ++|-..+-+-..-+|..+.+. ..++||++--
T Consensus 258 ~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~g 337 (479)
T PRK07807 258 ALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADG 337 (479)
T ss_pred HHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecC
Confidence 5678888888777777666666788888899999996 567777666555566655421 2478999999
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
=|-++.++..|.++|||+|.+=-.++
T Consensus 338 gi~~~~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 338 GVRHPRDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred CCCCHHHHHHHHHcCCCeeeccHhhc
Confidence 99999999999999999998744443
No 88
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.74 E-value=0.26 Score=45.32 Aligned_cols=76 Identities=26% Similarity=0.238 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHcCceEEEE----eccC--CCCCCCHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSI----LTDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISV----LTD~--~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaa 270 (355)
++.+ ++...+.|++.|.+ .|.. ..+...++.+..+++. +++||+. .+.| ++.++.++..+|||+|++--+
T Consensus 128 t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-~~iPvia-~GGI~t~~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 128 TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-VGCPVIA-EGRINTPEQAKKALELGAHAVVVGGA 204 (221)
T ss_pred CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-CCCCEEE-ECCCCCHHHHHHHHHCCCCEEEEchH
Confidence 3444 46777889999865 2222 2355568899999986 7999997 8888 799999999999999998888
Q ss_pred cCCHHH
Q 018446 271 VLPDLD 276 (355)
Q Consensus 271 iL~~~~ 276 (355)
+....+
T Consensus 205 i~~~~~ 210 (221)
T PRK01130 205 ITRPEE 210 (221)
T ss_pred hcCCHH
Confidence 776543
No 89
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.72 E-value=0.53 Score=45.70 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCceE-EEEeccCCCCCCCHHHHHHHHhcCCCCCeecccccc-CHH----HHHHHHHcCCcchHHHHhcCC
Q 018446 200 VEIARSYEKGGAAC-LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAW----QIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 200 ~~iA~~Ye~~GAaa-ISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpy----QI~eAr~~GADAVLLIaaiL~ 273 (355)
..+|+...+.|+.. +|-.+ ..+++++.... .-|+...-|+- +++ ++..+...|+|+|.+-+....
T Consensus 84 ~~la~aa~~~g~~~~~~~~~-----~~~~~~i~~~~----~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~ 154 (299)
T cd02809 84 LATARAAAAAGIPFTLSTVS-----TTSLEEVAAAA----PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV 154 (299)
T ss_pred HHHHHHHHHcCCCEEecCCC-----cCCHHHHHHhc----CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 57888888888654 45433 34677665442 35777776664 666 566667889999998777664
Q ss_pred ------HHHHHHHHHHHHHcCCcEE-EEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 274 ------DLDIRYMTKICKLLGLTAL-VEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 274 ------~~~L~~L~~~A~~LGLeaL-VEVH~~eELerAl~l~ga~iIGINNR 318 (355)
.+.++. +....++-.+ -+|.+.+++.++.++ |++.|.|.|+
T Consensus 155 ~~~~~~~~~i~~---l~~~~~~pvivK~v~s~~~a~~a~~~-G~d~I~v~~~ 202 (299)
T cd02809 155 LGRRLTWDDLAW---LRSQWKGPLILKGILTPEDALRAVDA-GADGIVVSNH 202 (299)
T ss_pred CCCCCCHHHHHH---HHHhcCCCEEEeecCCHHHHHHHHHC-CCCEEEEcCC
Confidence 234444 3444565554 458999999999997 9999999884
No 90
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.70 E-value=0.06 Score=53.80 Aligned_cols=71 Identities=23% Similarity=0.173 Sum_probs=53.9
Q ss_pred HHHHHHHHcCceEEEEe--------ccCCCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 201 EIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVL--------TD~~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
+-|+...++||+++=|= |......| .+.-+..++++ +++||+.--=|-++.+|..|.++|||+|.+=
T Consensus 152 e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 152 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 46677778999997433 33332333 24457777775 7899999999999999999999999999887
Q ss_pred HhcC
Q 018446 269 AAVL 272 (355)
Q Consensus 269 aaiL 272 (355)
-.++
T Consensus 231 ~~~~ 234 (326)
T PRK05458 231 SLFA 234 (326)
T ss_pred hhhc
Confidence 6666
No 91
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.63 E-value=2.1 Score=40.90 Aligned_cols=136 Identities=22% Similarity=0.224 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
.||.++|+.|.+.||.-|-|.==..-..| +++.++.+++. +.+||..-.=|=+.-++.+....|||.|.+-.+++.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 49999999999999987765321122223 46777788775 789987777666788888888899999998877776
Q ss_pred HHHHHHHHHHHHHcCCcEE---------------EEeC--------CHHHH-HHHhccCCCeEEEeeCCCCCc--cccCh
Q 018446 274 DLDIRYMTKICKLLGLTAL---------------VEVH--------DEREM-DRVLGIEGIELIGINNRNLET--FEVDN 327 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaL---------------VEVH--------~~eEL-erAl~l~ga~iIGINNRdL~T--fevDl 327 (355)
+.+ -+.+.+..+|=+.+ |=++ +..|+ +++.+. |+.-|-+++++-.. -..|+
T Consensus 109 ~~~--~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~~~i~~~G~~~G~d~ 185 (258)
T PRK01033 109 DPD--LITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEAL-GAGEILLNSIDRDGTMKGYDL 185 (258)
T ss_pred CHH--HHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHc-CCCEEEEEccCCCCCcCCCCH
Confidence 432 23444554442111 1111 24444 444454 88988899887532 23577
Q ss_pred hhHHhhhcc
Q 018446 328 SNTKKLLEG 336 (355)
Q Consensus 328 ~~t~~L~~~ 336 (355)
+...++...
T Consensus 186 ~~i~~~~~~ 194 (258)
T PRK01033 186 ELLKSFRNA 194 (258)
T ss_pred HHHHHHHhh
Confidence 777777654
No 92
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.61 E-value=0.18 Score=47.62 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL 267 (355)
.|..++|+.++++||++|-+-+ .+.|..-|+..+++..+++||+..-=|.++-|..+....|||+|.+
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~---~~~g~~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDA---MDPGNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECc---CCCCCCCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 3788999999999999998743 3445334445555432589999999999999999999999999865
No 93
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.59 E-value=0.57 Score=46.95 Aligned_cols=121 Identities=8% Similarity=0.090 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHcCc--eEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH-------
Q 018446 198 DPVEIARSYEKGGA--ACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------- 268 (355)
Q Consensus 198 Dp~~iA~~Ye~~GA--aaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI------- 268 (355)
+-.+-+....++|+ ++|.|-+--.+-..-.+.++.+|+...++||+.+|.. +.-....+..+|||+|..=
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg~~~G~~~ 175 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENAGADATKVGIGPGKVC 175 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHcCcCEEEECCCCCccc
Confidence 34467778888854 9998855442222234557778875335899999966 8889999999999996521
Q ss_pred -H----hc-CCHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 269 -A----AV-LPDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 269 -a----ai-L~~~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNRdL 320 (355)
- .. .++=++..+.+.++.+....+.+ +++..++.+|+.+ ||+.+++-+-=+
T Consensus 176 ~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~-GA~aV~vG~~~~ 234 (326)
T PRK05458 176 ITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GATMVMIGSLFA 234 (326)
T ss_pred ccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh-CCCEEEechhhc
Confidence 1 11 11115556677777777776665 8999999999998 999999875444
No 94
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.53 E-value=0.35 Score=42.06 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeeccccc--------cCHHHHHHHHHcCCcchHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEFI--------VDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKDFI--------IdpyQI~eAr~~GADAVLL 267 (355)
+...+++.+.++|+++|.++- +.++.+++... ++||+.+=-- ---.++.+|..+|||+|++
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 356778888899999999885 66776665422 4887754211 1236788899999999998
Q ss_pred HHhc---CC---HHHHHHHHHHHHH--cCCcEEEEeC-----CHHHHHHHh---ccCCCeEEEeeCCCCCccccChhhHH
Q 018446 268 IAAV---LP---DLDIRYMTKICKL--LGLTALVEVH-----DEREMDRVL---GIEGIELIGINNRNLETFEVDNSNTK 331 (355)
Q Consensus 268 Iaai---L~---~~~L~~L~~~A~~--LGLeaLVEVH-----~~eELerAl---~l~ga~iIGINNRdL~TfevDl~~t~ 331 (355)
.... .+ +.-++++.+++.. .|+-.++... +.+++.++. ...|++.|-...-... =..|+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~-~~~~~~~~~ 163 (201)
T cd00945 85 VINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG-GGATVEDVK 163 (201)
T ss_pred eccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC-CCCCHHHHH
Confidence 5333 33 3234445566666 4898888776 677776642 2236666543321110 112677777
Q ss_pred hhhcc
Q 018446 332 KLLEG 336 (355)
Q Consensus 332 ~L~~~ 336 (355)
++.+.
T Consensus 164 ~i~~~ 168 (201)
T cd00945 164 LMKEA 168 (201)
T ss_pred HHHHh
Confidence 77654
No 95
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.49 E-value=0.97 Score=40.27 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHcCceEEEE-eccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCH--HHHHHHHHcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSI-LTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISV-LTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdp--yQI~eAr~~GADAVLLIaai 271 (355)
+..+.++...++|+++|=+ .-|..|... +++.+..+|+. ++.|+.. ++++.. -.+..+..+|||+|.+....
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v-~l~~~d~~~~~~~~~~~g~dgv~vh~~~ 90 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKH-TDLPLDV-HLMVENPERYIEAFAKAGADIITFHAEA 90 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhh-CCCcEEE-EeeeCCHHHHHHHHHHcCCCEEEECccc
Confidence 4445677888999999987 223223222 35788888874 3444322 344442 23888889999998776654
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHhccCCCeEEEeeCCC
Q 018446 272 LPDLDIRYMTKICKLLGLTALVEVHD---EREMDRVLGIEGIELIGINNRN 319 (355)
Q Consensus 272 L~~~~L~~L~~~A~~LGLeaLVEVH~---~eELerAl~l~ga~iIGINNRd 319 (355)
- ++..+.++.++..|+...+-+|. .+.++.... +++.|++-...
T Consensus 91 ~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~d~i~~~~~~ 137 (211)
T cd00429 91 T--DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLD--EVDLVLVMSVN 137 (211)
T ss_pred h--hhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHh--hCCEEEEEEEC
Confidence 3 45667789999999999999974 333444322 46777554443
No 96
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.42 E-value=0.39 Score=46.25 Aligned_cols=76 Identities=32% Similarity=0.291 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHcCceEEEEec-------cC-----------CCCCC------CHHHHHHHHhcCCCCCeeccccccCHHH
Q 018446 198 DPVEIARSYEKGGAACLSILT-------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT-------D~-----------~fF~G------S~edL~~VR~a~v~lPVLrKDFIIdpyQ 253 (355)
|..++|+..+++||++|.+.. |. .++.| +++.+..++++ +++||+.-==|-++.+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAED 248 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHH
Confidence 678999999999999997631 11 11233 47888999986 8999999988999999
Q ss_pred HHHHHHcCCcchHHHHhcCCH
Q 018446 254 IYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL~~ 274 (355)
+.+...+|||+|-+--+++-+
T Consensus 249 a~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 249 AIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred HHHHHHcCCCceeEcHHHhcC
Confidence 999999999999987766653
No 97
>PLN02591 tryptophan synthase
Probab=93.39 E-value=0.89 Score=43.85 Aligned_cols=81 Identities=11% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHhcCCCCCee-ccccccCHHH------HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe
Q 018446 223 FKGSFENLEAVRSAGVKCPLL-CKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295 (355)
Q Consensus 223 F~GS~edL~~VR~a~v~lPVL-rKDFIIdpyQ------I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV 295 (355)
...-++.++++|+. .++|++ +--+= .-|| +.+++.+|+|+||+. =|+.++..++.+.|+++||+.+.=|
T Consensus 63 ~~~~~~~~~~~r~~-~~~p~ilm~Y~N-~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 63 LDSVISMLKEVAPQ-LSCPIVLFTYYN-PILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEeccc-HHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 34568899999974 788944 32221 1133 788999999997665 3667899999999999999999988
Q ss_pred -CC--HHHHHHHhcc
Q 018446 296 -HD--EREMDRVLGI 307 (355)
Q Consensus 296 -H~--~eELerAl~l 307 (355)
.| ++.++++...
T Consensus 139 ~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 139 TPTTPTERMKAIAEA 153 (250)
T ss_pred CCCCCHHHHHHHHHh
Confidence 33 3446776554
No 98
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.27 E-value=0.53 Score=43.49 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=58.0
Q ss_pred HHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc--cCH----HHHHHHHHcCCcchHHHHhcCCHH
Q 018446 202 IARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDA----WQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI--Idp----yQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
.++.+.+.||+.|-+ +|.++++.++.+.+. +.+||+.--=| -++ -++.++..+||++|+..-+++..+
T Consensus 148 ~~~~a~~~GaD~Ik~-----~~~~~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 148 AARIGAELGADIVKT-----KYTGDAESFKEVVEG-CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRP 221 (235)
T ss_pred HHHHHHHHCCCEEEe-----cCCCCHHHHHHHHhc-CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCC
Confidence 356688899999998 467889999999985 88998664322 233 458999999999999999998766
Q ss_pred HHHHHHHH
Q 018446 276 DIRYMTKI 283 (355)
Q Consensus 276 ~L~~L~~~ 283 (355)
+-...++.
T Consensus 222 dp~~~~~~ 229 (235)
T cd00958 222 DPVAMLRA 229 (235)
T ss_pred CHHHHHHH
Confidence 65554443
No 99
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.19 E-value=0.42 Score=48.23 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=71.9
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcC--CHHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLLG--LTALV--EVH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL--~~~~L~~L~~~A~~LG--LeaLV--EVH 296 (355)
++++|..+|+. .++||+.|- |.++--...+..+|||+|.+.- ..| .+..+..|.+++..++ +..++ -|.
T Consensus 209 ~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr 286 (351)
T cd04737 209 SPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVR 286 (351)
T ss_pred CHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 68999999986 899999996 5788888999999999987721 011 1224566667777774 66555 489
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLET 322 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~T 322 (355)
+-.++-+++.+ ||+.++|-..-|..
T Consensus 287 ~g~Di~kaLal-GA~~V~iGr~~l~~ 311 (351)
T cd04737 287 RGEHVFKALAS-GADAVAVGRPVLYG 311 (351)
T ss_pred CHHHHHHHHHc-CCCEEEECHHHHHH
Confidence 99999999997 99999987654443
No 100
>PLN02979 glycolate oxidase
Probab=93.19 E-value=0.39 Score=48.98 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=74.1
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cCC--HHHHHHHHHHHHHcC--CcEEEE--eC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VLP--DLDIRYMTKICKLLG--LTALVE--VH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL~--~~~L~~L~~~A~~LG--LeaLVE--VH 296 (355)
+++||..+|+. .++||+-|-. .++.....|..+|+|+|.+--. .|+ ...+.-|.+++..++ ++.++- |+
T Consensus 211 tW~dl~wlr~~-~~~PvivKgV-~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr 288 (366)
T PLN02979 211 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR 288 (366)
T ss_pred CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence 57999999985 8999999998 5899999999999999864211 111 123556666666655 777774 89
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
+-.|+-+|+.+ ||+.+||-..=|..+.
T Consensus 289 ~G~Di~KALAL-GAdaV~iGrp~L~~la 315 (366)
T PLN02979 289 RGTDVFKALAL-GASGIFIGRPVVFSLA 315 (366)
T ss_pred cHHHHHHHHHc-CCCEEEEcHHHHHHHH
Confidence 99999999998 9999999877664443
No 101
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.15 E-value=0.88 Score=44.43 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=83.3
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCC------CCCCCH---------HHHHHHHhcCCCCCe
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK------YFKGSF---------ENLEAVRSAGVKCPL 242 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~------fF~GS~---------edL~~VR~a~v~lPV 242 (355)
.+|+-+--.+|. +..+.|+..+++|+++|-+..--. -++|+. +-+..+|++ +++||
T Consensus 64 p~i~ql~g~~~~--------~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv 134 (319)
T TIGR00737 64 PISVQLFGSDPD--------TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPV 134 (319)
T ss_pred eEEEEEeCCCHH--------HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCE
Confidence 466766444442 344556666778999998853211 134653 457777875 78999
Q ss_pred ecc------ccccCHHHHHH-HHHcCCcchHHHHhcC-----CHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccC
Q 018446 243 LCK------EFIVDAWQIYY-ARTKGADAVLLIAAVL-----PDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIE 308 (355)
Q Consensus 243 LrK------DFIIdpyQI~e-Ar~~GADAVLLIaaiL-----~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ 308 (355)
..| +-..+..++.+ ...+|+|+|.+....- ++.++..+.++.+.+++..+. -|+|.++++++++..
T Consensus 135 ~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 135 TVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred EEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 887 21123334443 4567999998754422 233566666777777765554 589999999999545
Q ss_pred CCeEEEe
Q 018446 309 GIELIGI 315 (355)
Q Consensus 309 ga~iIGI 315 (355)
|++.|+|
T Consensus 215 gad~Vmi 221 (319)
T TIGR00737 215 GCDGVMI 221 (319)
T ss_pred CCCEEEE
Confidence 8998888
No 102
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.13 E-value=0.35 Score=46.44 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446 224 KGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 224 ~GS~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai 271 (355)
....+.++.+|+. ++.||.. ||.|+ +-|+.++..+|||+|+.=-++
T Consensus 184 ~~~~~~i~~lr~~-~~~pi~v-gfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 184 SALNELVKRLKAY-SAKPVLV-GFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred hhHHHHHHHHHhh-cCCCEEE-eCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 3447888899986 7899887 99997 999999999999998764444
No 103
>PRK06852 aldolase; Validated
Probab=92.98 E-value=0.61 Score=46.44 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=85.2
Q ss_pred CCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc----cccc-----CHHH-----HH
Q 018446 190 RGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFIV-----DAWQ-----IY 255 (355)
Q Consensus 190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK----DFII-----dpyQ-----I~ 255 (355)
.|++....||..+.+.-.++|++|+..- .|-+ +..+....++|++-| .-+. ||++ +.
T Consensus 52 ~~~~~gl~dp~~~i~~~~~~g~dav~~~------~G~l---~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVe 122 (304)
T PRK06852 52 EGIAKDDADPEHLFRIASKAKIGVFATQ------LGLI---ARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVE 122 (304)
T ss_pred ccCCcccCCHHHHHHHHHhcCCCEEEeC------HHHH---HhhccccCCCcEEEEECCCCCcCCcccCCccccceecHH
Confidence 3336677899999999999999997643 2333 333222245665544 1111 2332 88
Q ss_pred HHHHcC------CcchHHHHhcCCHH------HHHHHHHHHHHcCCcEEEEeC-------CHHH-------HHHHhccCC
Q 018446 256 YARTKG------ADAVLLIAAVLPDL------DIRYMTKICKLLGLTALVEVH-------DERE-------MDRVLGIEG 309 (355)
Q Consensus 256 eAr~~G------ADAVLLIaaiL~~~------~L~~L~~~A~~LGLeaLVEVH-------~~eE-------LerAl~l~g 309 (355)
+|..+| ||||-.-+-+-++. +|.++.+.|+++||-.|+.+. +..+ ...+.++ |
T Consensus 123 eAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL-G 201 (304)
T PRK06852 123 QVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL-G 201 (304)
T ss_pred HHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH-c
Confidence 999999 88998877766642 455566889999999988543 2222 2234565 9
Q ss_pred CeEEEeeCCCCCccccChhhHHhhhcc
Q 018446 310 IELIGINNRNLETFEVDNSNTKKLLEG 336 (355)
Q Consensus 310 a~iIGINNRdL~TfevDl~~t~~L~~~ 336 (355)
|+||=++=-- ...+-|.+...++...
T Consensus 202 ADIVKv~y~~-~~~~g~~e~f~~vv~~ 227 (304)
T PRK06852 202 ADFVKVNYPK-KEGANPAELFKEAVLA 227 (304)
T ss_pred CCEEEecCCC-cCCCCCHHHHHHHHHh
Confidence 9999987531 1122455666666554
No 104
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.80 E-value=0.33 Score=46.62 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
-|+.++..+|.++|+++|++.+.-+.|++.++...++ |++.+=|-..|+..+.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~-~~~~~KIaS~dl~n~~ 104 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEEL-GVPAYKIASGDLTNLP 104 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH-T-SEEEE-GGGTT-HH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc-CCCEEEeccccccCHH
Confidence 3788999999999999999999999999999999887 8999999988887543
No 105
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.76 E-value=0.41 Score=41.60 Aligned_cols=133 Identities=18% Similarity=0.083 Sum_probs=73.8
Q ss_pred CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC------HHHHHHHHhcC-CCCCeeccccc
Q 018446 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS------FENLEAVRSAG-VKCPLLCKEFI 248 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS------~edL~~VR~a~-v~lPVLrKDFI 248 (355)
+..||+-+--.+. . ....+..+.++.+.+.||+++.|... .||.-+ .++++.++++. .++|++-...-
T Consensus 48 ~~~v~~~v~~~~~---~-~~~~~~~~~a~~a~~~Gad~i~v~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 48 DVPVIVVVGFPTG---L-TTTEVKVAEVEEAIDLGADEIDVVIN-IGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred CCeEEEEecCCCC---C-CcHHHHHHHHHHHHHcCCCEEEEecc-HHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 5677876533321 1 11235678899999999999999764 344445 78888888751 37898866542
Q ss_pred ---cCHHHHHH----HHHcCCcchHHHHhcC----CHHHHHHHHHHHH-HcCCcEEEEeCCHHHHHHHhccCCCeEEE
Q 018446 249 ---VDAWQIYY----ARTKGADAVLLIAAVL----PDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIG 314 (355)
Q Consensus 249 ---IdpyQI~e----Ar~~GADAVLLIaaiL----~~~~L~~L~~~A~-~LGLeaLVEVH~~eELerAl~l~ga~iIG 314 (355)
+++-++.+ +...|+|+|=.-..-. +...++.+.+... .+.+.++--+.+.+.+..++.+ |++-++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~-Ga~g~~ 199 (201)
T cd00945 123 RGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA-GADGIG 199 (201)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh-ccceee
Confidence 23333333 3467888775433211 2233333332221 1122223333345777777765 665544
No 106
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.69 E-value=0.79 Score=43.16 Aligned_cols=95 Identities=23% Similarity=0.187 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHcCceEEEEec--c-CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHh
Q 018446 195 EDFDPVEIARSYEKGGAACLSILT--D-EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAA 270 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVLT--D-~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaa 270 (355)
.+.++.++++.+.+.|+++|.+.+ . ..--+=+++.+..+++. +++||+.--=+-+.--+.++.. .|||+|+.=-+
T Consensus 151 ~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~-~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 151 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA-VNVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 356889999999999999998743 2 21111157888889885 7999999988888888888886 59999988666
Q ss_pred cCC-HHHHHHHHHHHHHcCCc
Q 018446 271 VLP-DLDIRYMTKICKLLGLT 290 (355)
Q Consensus 271 iL~-~~~L~~L~~~A~~LGLe 290 (355)
+.. .-.++++.++++..|+.
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK02083 230 FHFGEITIGELKAYLAEQGIP 250 (253)
T ss_pred HHcCCCCHHHHHHHHHHCCCc
Confidence 553 44677778888877765
No 107
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=92.66 E-value=0.55 Score=47.64 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc----ccc-c--CHHH-----HHHHHHcCC
Q 018446 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFI-V--DAWQ-----IYYARTKGA 262 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK----DFI-I--dpyQ-----I~eAr~~GA 262 (355)
...||..+-+.-.++|++|+..- .|-++.. .+....++|++-| .-+ - ..+| +.+|..+||
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~------~G~l~~~--~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGA 160 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST------LGVLEAV--ARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGA 160 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC------HHHHHhc--cccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCC
Confidence 46799999999999999998754 2333322 1222234564433 111 0 0122 789999999
Q ss_pred cchHHHHhcCCHH------HHHHHHHHHHHcCCcEEEEeC-------CHHH-----------HHHHhccCCCeEEEeeC
Q 018446 263 DAVLLIAAVLPDL------DIRYMTKICKLLGLTALVEVH-------DERE-----------MDRVLGIEGIELIGINN 317 (355)
Q Consensus 263 DAVLLIaaiL~~~------~L~~L~~~A~~LGLeaLVEVH-------~~eE-----------LerAl~l~ga~iIGINN 317 (355)
|||-.-+-+-++. +|..+.+.|+++||-.++.+. +..+ ...|.++ ||+||=++=
T Consensus 161 dAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL-GADIVKv~y 238 (348)
T PRK09250 161 VAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI-GADIIKQKL 238 (348)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH-cCCEEEecC
Confidence 9998877766643 455566889999999998543 3332 2234566 999999874
No 108
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.55 E-value=0.12 Score=51.53 Aligned_cols=70 Identities=23% Similarity=0.176 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHcCceEEEEe--------ccCCCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446 198 DPVEIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV 265 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL--------TD~~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV 265 (355)
...+.|+...++||++|-|= |......| .+.-+..++++ .++||+..==|-+...|..|.++|||+|
T Consensus 146 ~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a-~~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 146 GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHh-cCCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 34578999999999998765 33331112 25678888875 7899999999999999999999999998
Q ss_pred HHH
Q 018446 266 LLI 268 (355)
Q Consensus 266 LLI 268 (355)
.+=
T Consensus 225 mig 227 (321)
T TIGR01306 225 MIG 227 (321)
T ss_pred eec
Confidence 763
No 109
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.53 E-value=0.48 Score=45.35 Aligned_cols=76 Identities=32% Similarity=0.313 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHcCceEEEEe-c------cC-----------CCCCC------CHHHHHHHHhcCCCCCeeccccccCHHH
Q 018446 198 DPVEIARSYEKGGAACLSIL-T------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL-T------D~-----------~fF~G------S~edL~~VR~a~v~lPVLrKDFIIdpyQ 253 (355)
+..++|+..+++||++|.+. | |. ..+.| +++.+..+++. +++||+.-==|-++-+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGED 245 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHH
Confidence 68899999999999999763 1 11 12233 35888899885 7999999988999999
Q ss_pred HHHHHHcCCcchHHHHhcCCH
Q 018446 254 IYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL~~ 274 (355)
+.++..+|||+|-+--+++.+
T Consensus 246 a~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 246 ALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred HHHHHHcCCCEEEEchhhhcC
Confidence 999999999999987776653
No 110
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.52 E-value=0.46 Score=45.63 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHhcCCCCCeeccccccCH-------HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC
Q 018446 224 KGSFENLEAVRSAGVKCPLLCKEFIVDA-------WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296 (355)
Q Consensus 224 ~GS~edL~~VR~a~v~lPVLrKDFIIdp-------yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH 296 (355)
..-++.++.+|+..+++|++ ----..| --+.+++.+|+|+|++- -|+.++..++++.|+++|+++..=|.
T Consensus 72 ~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEEC
Confidence 35678889998633688955 1111222 23788999999997765 46677899999999999999664443
Q ss_pred ---CHHHHHHHhcc
Q 018446 297 ---DEREMDRVLGI 307 (355)
Q Consensus 297 ---~~eELerAl~l 307 (355)
+.+.+....+.
T Consensus 149 P~T~~eri~~i~~~ 162 (256)
T TIGR00262 149 PNADDERLKQIAEK 162 (256)
T ss_pred CCCCHHHHHHHHHh
Confidence 35566555543
No 111
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.44 E-value=3.4 Score=39.00 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCC--CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH-
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD- 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF--~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~- 274 (355)
||.++|+.|.+.||.-|-|.-=..-. +-.++.++++++. +.+||---==|=+.-++.....+|||.+.+=.+.|.+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~-~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p 111 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGK-LDVKVELSGGIRDDESLEAALATGCARVNIGTAALENP 111 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCH
Confidence 99999999999999887664321111 1235677777775 7899987666778899999999999999887777764
Q ss_pred HHHHHHHHHHHH---cCCcE---EE-------EeCCHHHHHHHhccCCCeEEEeeCCCCCcc--ccChhhHHhhhcc
Q 018446 275 LDIRYMTKICKL---LGLTA---LV-------EVHDEREMDRVLGIEGIELIGINNRNLETF--EVDNSNTKKLLEG 336 (355)
Q Consensus 275 ~~L~~L~~~A~~---LGLea---LV-------EVH~~eELerAl~l~ga~iIGINNRdL~Tf--evDl~~t~~L~~~ 336 (355)
+.+.++.+...+ ++++. .| +-.+..|+-+.+.-.|+.-|-+++|+-... ..|.+...++.+.
T Consensus 112 ~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~ 188 (241)
T PRK14024 112 EWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR 188 (241)
T ss_pred HHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh
Confidence 334444433211 12222 11 112334544444334899888998875422 2466666666553
No 112
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.41 E-value=1.1 Score=46.88 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH----H----HH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL----L----IA 269 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL----L----Ia 269 (355)
+..+.++.+.+.|+..|.|-+-..+-..-.+.++.+|+...++||++=|. ...-+...+..+|||+|- - +.
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv-~t~~~a~~l~~aGad~v~vgig~gsictt 305 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV-VTAEGTRDLVEAGADIVKVGVGPGAMCTT 305 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc-CCHHHHHHHHHcCCCEEEECccCCccccc
Confidence 55688999999999998887766664555677888887645788988774 567788888899999986 2 22
Q ss_pred hc---CCHHHHHHHHHHHH---HcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCC
Q 018446 270 AV---LPDLDIRYMTKICK---LLGLTALVE--VHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 270 ai---L~~~~L~~L~~~A~---~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNR 318 (355)
+. -+..++..+.+.|. .+|.-++-| +++..++.+|+.+ ||+-+.+-.-
T Consensus 306 ~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~-ga~~v~~g~~ 361 (479)
T PRK07807 306 RMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAA-GASNVMIGSW 361 (479)
T ss_pred ccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHc-CCCeeeccHh
Confidence 22 23346665555554 889888887 8999999999997 8876655443
No 113
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.37 E-value=0.58 Score=47.66 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=71.8
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLLG--LTALV--EVH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~LG--LeaLV--EVH 296 (355)
+++||..+|+. .++||+-|-. .++--...|..+|+|+|.+-- ..|+ ...+.-|.+++..++ ++.++ -|.
T Consensus 212 tW~di~wlr~~-~~~PiivKgV-~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr 289 (367)
T PLN02493 212 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR 289 (367)
T ss_pred CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence 57999999985 8999999998 589999999999999985421 1111 113445555656555 66666 489
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~Tf 323 (355)
+-.|+-+|+.+ ||+.+||-..=|..+
T Consensus 290 ~G~Dv~KALAL-GA~aV~iGr~~l~~l 315 (367)
T PLN02493 290 RGTDVFKALAL-GASGIFIGRPVVFSL 315 (367)
T ss_pred cHHHHHHHHHc-CCCEEEEcHHHHHHH
Confidence 99999999998 999999987655443
No 114
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.37 E-value=0.38 Score=46.98 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHcCceEEEEe--ccCCCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHH-HcCCcchHHHHhc
Q 018446 197 FDPVEIARSYEKGGAACLSIL--TDEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV 271 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVL--TD~~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr-~~GADAVLLIaai 271 (355)
.+..++|+.++++|+++|.|- |-...|.| .++.+..+++. +++||+.-==|-++-++.++. ..|||+|.+=-++
T Consensus 147 ~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 147 INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred chHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 457899999999999999884 32334444 57888888885 899999999899999999998 6899999987777
Q ss_pred CCHHH
Q 018446 272 LPDLD 276 (355)
Q Consensus 272 L~~~~ 276 (355)
|.+..
T Consensus 226 l~~P~ 230 (319)
T TIGR00737 226 LGNPW 230 (319)
T ss_pred hhCCh
Confidence 76544
No 115
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.35 E-value=0.67 Score=45.67 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHcCceEEEEecc---------------CCCCCCC------HHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTD---------------EKYFKGS------FENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD---------------~~fF~GS------~edL~~VR~a~v--~lPVLrKDFIIdpyQI 254 (355)
+..++|+..+++||++|++..- ..-|.|. ++.+..+|++ + ++||..-==|.++-++
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~-~~~~ipIi~~GGI~t~~da 295 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL-TGGKIPIIGVGGISSGEDA 295 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHHH
Confidence 5788999999999999987542 1123443 6888888885 6 7999988889999999
Q ss_pred HHHHHcCCcchHHHHhcC
Q 018446 255 YYARTKGADAVLLIAAVL 272 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL 272 (355)
.+...+|||+|-+--+++
T Consensus 296 ~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 296 YEKIRAGASLVQLYTGLV 313 (327)
T ss_pred HHHHHcCCCHHhccHHHH
Confidence 999999999999877764
No 116
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.32 E-value=0.71 Score=43.93 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=87.5
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA 257 (355)
.||+=+.--+|. +...++++..++|..||=|--... +-++-++.+++. ..=-++==--++++-|+.+|
T Consensus 14 ~vI~Vlr~~~~e--------~a~~~a~Ali~gGi~~IEITl~sp---~a~e~I~~l~~~-~p~~lIGAGTVL~~~q~~~a 81 (211)
T COG0800 14 PVVPVIRGDDVE--------EALPLAKALIEGGIPAIEITLRTP---AALEAIRALAKE-FPEALIGAGTVLNPEQARQA 81 (211)
T ss_pred CeeEEEEeCCHH--------HHHHHHHHHHHcCCCeEEEecCCC---CHHHHHHHHHHh-CcccEEccccccCHHHHHHH
Confidence 366655444443 467899999999999998854433 556777777764 22123334456899999999
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEE
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iI 313 (355)
..+||+-| .++.-=.++++.|...||-.+=-|-|..|+..|++. |++.+
T Consensus 82 ~~aGa~fi------VsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~-G~~~l 130 (211)
T COG0800 82 IAAGAQFI------VSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALEL-GASAL 130 (211)
T ss_pred HHcCCCEE------ECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHc-Chhhe
Confidence 99999964 244344578999999999999999999999999997 87643
No 117
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.31 E-value=0.33 Score=47.82 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCC-----------------------HHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGS-----------------------FENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS-----------------------~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
|..++|+..+++||++|.+--- ++++. ++.+..++++ +++||+--==|-++.++
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~--~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da 254 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNR--FYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDV 254 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECC--cCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHH
Confidence 6889999999999999987321 12211 3455666665 78999988889999999
Q ss_pred HHHHHcCCcchHHHHhcCCH
Q 018446 255 YYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL~~ 274 (355)
.+...+|||+|-+--+++.+
T Consensus 255 ~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 255 IKMLLAGADVVMIASALLRH 274 (334)
T ss_pred HHHHHcCCCceeeehHHhhh
Confidence 99999999999987777753
No 118
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.26 E-value=0.29 Score=48.55 Aligned_cols=120 Identities=22% Similarity=0.219 Sum_probs=82.2
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe----ccCCCCCC-----CHHHHHHHHhcCCCCCeeccccc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI 248 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G-----S~edL~~VR~a~v~lPVLrKDFI 248 (355)
+||.+|- + .+.|+.-+++||+++-+| .|..--+| +++++.+++++ +++||.-|-=|
T Consensus 19 gvimdv~-------------~-~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~-V~iPVigk~Ri 83 (293)
T PRK04180 19 GVIMDVV-------------N-AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDA-VSIPVMAKARI 83 (293)
T ss_pred CeEEEeC-------------C-HHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHh-CCCCeEEeehh
Confidence 5888882 2 246666677777766554 34333333 68999999996 99998766544
Q ss_pred cCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhccCCCeEEEee
Q 018446 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 249 IdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~-LGLeaLVEVH~~eELerAl~l~ga~iIGIN 316 (355)
-|-.....--++|+|-|= =...|.+ +.+++.+.+. ++.--+-.+.|.+|..++... |+++|+--
T Consensus 84 gh~~Ea~~L~~~GvDiID-~Te~lrp--ad~~~~~~K~~f~~~fmad~~~l~EAlrai~~-GadmI~Tt 148 (293)
T PRK04180 84 GHFVEAQILEALGVDYID-ESEVLTP--ADEEYHIDKWDFTVPFVCGARNLGEALRRIAE-GAAMIRTK 148 (293)
T ss_pred hHHHHHHHHHHcCCCEEe-ccCCCCc--hHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCeeecc
Confidence 442223333458999882 1123544 4466666665 588888899999999999996 99999987
No 119
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.21 E-value=0.16 Score=53.46 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=68.5
Q ss_pred EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-------eccCCC------CCCCHHHHHHHHhcCCCCCeecc
Q 018446 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-------LTDEKY------FKGSFENLEAVRSAGVKCPLLCK 245 (355)
Q Consensus 179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-------LTD~~f------F~GS~edL~~VR~a~v~lPVLrK 245 (355)
.|.++|+.-|..-++..+..-.+-|+...++||++|-| +|-+.- ....+.++..+++. .++||++-
T Consensus 279 ~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIad 357 (505)
T PLN02274 279 MIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIAD 357 (505)
T ss_pred HHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-cCCeEEEe
Confidence 56778887775544444444445677778899999966 333220 12356678888774 78999999
Q ss_pred ccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 246 EFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 246 DFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
-=|-++-+|..|.++|||+|.+=-++..
T Consensus 358 GGI~~~~di~kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 358 GGISNSGHIVKALTLGASTVMMGSFLAG 385 (505)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence 9999999999999999999987555543
No 120
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.13 E-value=0.72 Score=45.51 Aligned_cols=85 Identities=26% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCCCCCCHHHHHHHHHHcCceEEEEecc--CCCCC--CCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcch
Q 018446 191 GILREDFDPVEIARSYEKGGAACLSILTD--EKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAV 265 (355)
Q Consensus 191 G~I~~~~Dp~~iA~~Ye~~GAaaISVLTD--~~fF~--GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAV 265 (355)
|+-....|..++|+.++++|+++|.|-.- +..|. .+++.+..++++ +++||+.-==|.++-++.+... .|||+|
T Consensus 143 G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 143 GWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred cccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 43333457889999999999999987642 22343 468888899886 8999999999999999999996 699999
Q ss_pred HHHHhcCCHHH
Q 018446 266 LLIAAVLPDLD 276 (355)
Q Consensus 266 LLIaaiL~~~~ 276 (355)
.+==++|.+.-
T Consensus 222 miGR~~l~nP~ 232 (321)
T PRK10415 222 MIGRAAQGRPW 232 (321)
T ss_pred EEChHhhcCCh
Confidence 98777775533
No 121
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.88 E-value=0.62 Score=42.65 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=68.3
Q ss_pred HHHHHHHHcCceEEEEeccCCCCC--CCHHHHHHHHhcCCCCCeeccccccC------HHHHHHHHHcCCcchHHHHhcC
Q 018446 201 EIARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVD------AWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~fF~--GS~edL~~VR~a~v~lPVLrKDFIId------pyQI~eAr~~GADAVLLIaaiL 272 (355)
+.++...+.| ++.++ ...+.. .-++.++.+++. .+.|+... ++++ .-.+..+..+|+|+|.|-..
T Consensus 17 ~~~~~~~~~G--~ig~i-~~~~~~~~~~~~~~~~i~~~-~~~~~~v~-~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-- 89 (236)
T cd04730 17 ELAAAVSNAG--GLGFI-GAGYLTPEALRAEIRKIRAL-TDKPFGVN-LLVPSSNPDFEALLEVALEEGVPVVSFSFG-- 89 (236)
T ss_pred HHHHHHHhCC--Ccccc-CCCCCCHHHHHHHHHHHHHh-cCCCeEEe-EecCCCCcCHHHHHHHHHhCCCCEEEEcCC--
Confidence 4677777777 45554 222221 012344555543 23343322 2222 22567788899999876433
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
....+++.++..|+..++-+|+.++++++.+. |++.|.+-++
T Consensus 90 ---~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~-gad~i~~~~~ 131 (236)
T cd04730 90 ---PPAEVVERLKAAGIKVIPTVTSVEEARKAEAA-GADALVAQGA 131 (236)
T ss_pred ---CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHc-CCCEEEEeCc
Confidence 22456777888999999999999999998885 8999888665
No 122
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.86 E-value=0.87 Score=42.99 Aligned_cols=96 Identities=15% Similarity=0.037 Sum_probs=57.9
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceE--EEEeccCCCCCCC-----HHHHHHHHhcCCCCCeecccccc
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC--LSILTDEKYFKGS-----FENLEAVRSAGVKCPLLCKEFIV 249 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaa--ISVLTD~~fF~GS-----~edL~~VR~a~v~lPVLrKDFII 249 (355)
...|.++...||- +-.+.|.+....- +||. + -|++. .+.+..+|+...+.|| .=||.|
T Consensus 130 l~~~~~v~p~T~~-----------e~l~~~~~~~~~~l~msv~--~-~~g~~~~~~~~~~i~~lr~~~~~~~i-~v~gGI 194 (244)
T PRK13125 130 LKPVFFTSPKFPD-----------LLIHRLSKLSPLFIYYGLR--P-ATGVPLPVSVERNIKRVRNLVGNKYL-VVGFGL 194 (244)
T ss_pred CCEEEEECCCCCH-----------HHHHHHHHhCCCEEEEEeC--C-CCCCCchHHHHHHHHHHHHhcCCCCE-EEeCCc
Confidence 5677788666552 3334444433222 2442 2 23333 4566677775225785 469999
Q ss_pred -CHHHHHHHHHcCCcchHHHHhcC---CHHHHHHHHHHHHHc
Q 018446 250 -DAWQIYYARTKGADAVLLIAAVL---PDLDIRYMTKICKLL 287 (355)
Q Consensus 250 -dpyQI~eAr~~GADAVLLIaaiL---~~~~L~~L~~~A~~L 287 (355)
.+-|+.++..+|||+++.=-+++ .+.+++++.++++++
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~ 236 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKI 236 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999998754443 233355555555443
No 123
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.85 E-value=0.11 Score=53.32 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=62.3
Q ss_pred EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe-------ccCCCCC-C--CHHHHHHHHhc--CCCCCeeccc
Q 018446 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-------TDEKYFK-G--SFENLEAVRSA--GVKCPLLCKE 246 (355)
Q Consensus 179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL-------TD~~fF~-G--S~edL~~VR~a--~v~lPVLrKD 246 (355)
.|.++|+.-|..-++-.+..-.+-|+...++||++|.|= |-...-+ | .+..+..+++. ..++||++-=
T Consensus 184 ~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 184 LVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred HHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 455777777764443434444567888888999999753 2221111 1 34555444432 2579999999
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhc
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaai 271 (355)
=|-++.+|..|.++|||+|.+=-++
T Consensus 264 GI~~~~Di~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 264 GIRFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CCCCHHHHHHHHHcCCCEEEEccee
Confidence 9999999999999999999864433
No 124
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.81 E-value=0.72 Score=47.19 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=70.7
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh---cC--CHHHHHHHHHHHHHcC--CcEEE--EeC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALV--EVH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa---iL--~~~~L~~L~~~A~~LG--LeaLV--EVH 296 (355)
++++|+.+|+. .++||+-|.. +++-....|..+|+|+|.+--. .+ ....+..|.+++..++ +..++ -|.
T Consensus 241 tW~~i~~lr~~-~~~pvivKgV-~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr 318 (383)
T cd03332 241 TWEDLAFLREW-TDLPIVLKGI-LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVR 318 (383)
T ss_pred CHHHHHHHHHh-cCCCEEEecC-CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcC
Confidence 57999999985 8999999977 8899999999999999874311 11 1123445566666554 66666 489
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
+-.++-+|+.+ ||+.++|-..=|.
T Consensus 319 ~G~Dv~KALaL-GA~~v~iGr~~l~ 342 (383)
T cd03332 319 TGADIMKALAL-GAKAVLIGRPYAY 342 (383)
T ss_pred cHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 99999999998 9999999665553
No 125
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.78 E-value=0.58 Score=43.03 Aligned_cols=76 Identities=29% Similarity=0.230 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHcCceEEEEe----ccC--CCCCCCHHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSIL----TDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL----TD~--~fF~GS~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaa 270 (355)
++.+ +....+.|++.|.+- |.. ..+...++.++.+++. +++||+. .+.| ++.++.++..+|||+|++--+
T Consensus 132 t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvia-~GGI~~~~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 132 TLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-LGIPVIA-EGRINSPEQAAKALELGADAVVVGSA 208 (219)
T ss_pred CHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh-cCCCEEE-eCCCCCHHHHHHHHHCCCCEEEEchH
Confidence 3444 455667799999662 221 2344568999999985 7999998 6777 899999999999999998877
Q ss_pred cCCHHH
Q 018446 271 VLPDLD 276 (355)
Q Consensus 271 iL~~~~ 276 (355)
+...++
T Consensus 209 l~~~~~ 214 (219)
T cd04729 209 ITRPEH 214 (219)
T ss_pred HhChHh
Confidence 776543
No 126
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.61 E-value=0.71 Score=46.78 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHcCceEEEE----------e-------------ccCCCCCCC------HHHHHHHHhcCC---CCCeecc
Q 018446 198 DPVEIARSYEKGGAACLSI----------L-------------TDEKYFKGS------FENLEAVRSAGV---KCPLLCK 245 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISV----------L-------------TD~~fF~GS------~edL~~VR~a~v---~lPVLrK 245 (355)
+..++|+..+++||++|+. - |....|.|. ++.+..++++ + ++||+--
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~-~~~~~ipIig~ 259 (420)
T PRK08318 181 DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD-PETRGLPISGI 259 (420)
T ss_pred cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc-cccCCCCEEee
Confidence 6789999999999999993 1 222345563 5777777775 5 7899988
Q ss_pred ccccCHHHHHHHHHcCCcchHHHHhcCC--HH----HHHHHHHHHHHcCCcEEEE
Q 018446 246 EFIVDAWQIYYARTKGADAVLLIAAVLP--DL----DIRYMTKICKLLGLTALVE 294 (355)
Q Consensus 246 DFIIdpyQI~eAr~~GADAVLLIaaiL~--~~----~L~~L~~~A~~LGLeaLVE 294 (355)
==|.+...+++...+|||+|.+--+++- +. -..+|-++-.+.|+..+-|
T Consensus 260 GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~e 314 (420)
T PRK08318 260 GGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLED 314 (420)
T ss_pred cCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHHH
Confidence 8889999999999999999998766654 32 2334445566677554433
No 127
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.50 E-value=0.64 Score=45.88 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCC-----------------------CHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKG-----------------------SFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G-----------------------S~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
+..++|+..+++||++|++--- +++. +++.+..+++. +++||.--==|.++..+
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt--~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~~Da 252 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNR--FYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR-VKASLAASGGVHDAEDV 252 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcC--cCCCCccccccceecCCCcCCccchhHHHHHHHHHHcc-cCCCEEEECCCCCHHHH
Confidence 6889999999999999987321 1111 24566777775 78999988889999999
Q ss_pred HHHHHcCCcchHHHHhcCCH------HHHHHHHHHHHHcCC
Q 018446 255 YYARTKGADAVLLIAAVLPD------LDIRYMTKICKLLGL 289 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL~~------~~L~~L~~~A~~LGL 289 (355)
++...+|||+|-+--+++-. +=+++|.++..+.|.
T Consensus 253 ~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~ 293 (325)
T cd04739 253 VKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGY 293 (325)
T ss_pred HHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 99999999999998777753 233444455555554
No 128
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=91.40 E-value=0.68 Score=47.36 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=71.7
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH---hcCC--HHHHHHHHHHHHHc--CCcEEEE--eC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVLP--DLDIRYMTKICKLL--GLTALVE--VH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa---aiL~--~~~L~~L~~~A~~L--GLeaLVE--VH 296 (355)
+++||+.+|+. .++||+.|-. +++-....+..+|+|+|.+-- ..|+ ...+..|.+++... +++.++- |+
T Consensus 233 tW~di~~lr~~-~~~pvivKgV-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr 310 (381)
T PRK11197 233 SWKDLEWIRDF-WDGPMVIKGI-LDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIR 310 (381)
T ss_pred CHHHHHHHHHh-CCCCEEEEec-CCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcC
Confidence 68999999995 9999999998 899999999999999986321 0111 11234455555444 4777774 89
Q ss_pred CHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446 297 DEREMDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINNRdL~Tf 323 (355)
+-.++-+||.+ ||+.++|-..=|..+
T Consensus 311 ~g~Di~KALaL-GA~~V~iGr~~l~~l 336 (381)
T PRK11197 311 NGLDVVRMIAL-GADTVLLGRAFVYAL 336 (381)
T ss_pred cHHHHHHHHHc-CcCceeEhHHHHHHH
Confidence 99999999998 999999876554443
No 129
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=91.37 E-value=0.58 Score=42.61 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccC---CCC-CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDE---KYF-KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF-~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADAVLLIaaiL 272 (355)
+..++++.+++.|++.|+|-.-. .+. ...++.+..+|+. +++||..--=|-++-++.++... |||+|.+=-++|
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 67889999999999999875532 122 3568899999985 89999999988899999999998 899998877766
Q ss_pred CHHH
Q 018446 273 PDLD 276 (355)
Q Consensus 273 ~~~~ 276 (355)
.+..
T Consensus 218 ~~P~ 221 (231)
T cd02801 218 GNPW 221 (231)
T ss_pred hCCH
Confidence 6533
No 130
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=91.35 E-value=0.64 Score=46.84 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
||+ .|+.+++.|+.|+--|+++---+= +.++++.+++. .++||++-==|=.|-++++|.++|||+||+--++..-
T Consensus 207 d~~-~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 207 DPI-AAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred CHH-HHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccC
Confidence 454 889999999988777777642111 57899999986 7899999999999999999999999999998888754
Q ss_pred HH
Q 018446 275 LD 276 (355)
Q Consensus 275 ~~ 276 (355)
++
T Consensus 285 ~d 286 (326)
T PRK11840 285 KN 286 (326)
T ss_pred CC
Confidence 33
No 131
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.03 E-value=0.16 Score=51.35 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=66.1
Q ss_pred EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEE-------EEeccCCCCCCCHHHHHHHHh-----cCCCCCeeccc
Q 018446 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACL-------SILTDEKYFKGSFENLEAVRS-----AGVKCPLLCKE 246 (355)
Q Consensus 179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaI-------SVLTD~~fF~GS~edL~~VR~-----a~v~lPVLrKD 246 (355)
.|-++|+.-|..-+|..+.--.+.|+....+||+++ ||+|-+.--+=..--|.+|.. .....||+..-
T Consensus 141 ~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADG 220 (346)
T PRK05096 141 FVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDG 220 (346)
T ss_pred HHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecC
Confidence 455666666776666666555579999999999999 567766544444445555532 12478999999
Q ss_pred cccCHHHHHHHHHcCCcchHH
Q 018446 247 FIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLL 267 (355)
=|-.+--|..|..+|||+|.|
T Consensus 221 Gi~~sGDI~KAlaaGAd~VMl 241 (346)
T PRK05096 221 GCTVPGDVAKAFGGGADFVML 241 (346)
T ss_pred CcccccHHHHHHHcCCCEEEe
Confidence 999999999999999999976
No 132
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.02 E-value=1.2 Score=41.54 Aligned_cols=90 Identities=23% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHcCceEEEE--eccC-CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcchHHHHh
Q 018446 195 EDFDPVEIARSYEKGGAACLSI--LTDE-KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAA 270 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISV--LTD~-~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADAVLLIaa 270 (355)
.+.+..++++.+++.|++.|-| .+.. ..-+-.++.+..+++. +++||+.--=|-++-.+.+.... |||+|++=-+
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 3567889999999999999988 4432 1222357888999885 79999999888999999999887 9999988666
Q ss_pred cCCH-HHHHHHHHHHH
Q 018446 271 VLPD-LDIRYMTKICK 285 (355)
Q Consensus 271 iL~~-~~L~~L~~~A~ 285 (355)
+.+. -.++++.++++
T Consensus 226 l~~~~~~~~~~~~~~~ 241 (243)
T cd04731 226 FHFGEYTIAELKEYLA 241 (243)
T ss_pred HHcCCCCHHHHHHHHh
Confidence 6543 34555555554
No 133
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=90.98 E-value=2.2 Score=44.53 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=97.8
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCC--CCCeeccccccCHHH
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQ 253 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQ 253 (355)
+-++.|| .|..++-++.. .||.-|.|+. |-+-|.-+++.-..++.. + +..++.-==|-.+-+
T Consensus 160 l~~lvEv-------------h~~~El~~al~-~~a~iiGiNnRdL~t~~vd~~~~~~l~~~-ip~~~~~vseSGI~t~~d 224 (454)
T PRK09427 160 MGVLTEV-------------SNEEELERAIA-LGAKVIGINNRNLRDLSIDLNRTRELAPL-IPADVIVISESGIYTHAQ 224 (454)
T ss_pred CcEEEEE-------------CCHHHHHHHHh-CCCCEEEEeCCCCccceECHHHHHHHHhh-CCCCcEEEEeCCCCCHHH
Confidence 5688888 35666666655 5999999975 566788887777777653 2 111222222346788
Q ss_pred HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhh
Q 018446 254 IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L 333 (355)
+...+. ||||||.=-+++..++....++--. .+.--+.-+.+.+++..|.++ |++.||+.----.--.|+++.+.+|
T Consensus 225 ~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~-~~~vKICGit~~eda~~a~~~-GaD~lGfIf~~~SpR~V~~~~a~~i 301 (454)
T PRK09427 225 VRELSP-FANGFLIGSSLMAEDDLELAVRKLI-LGENKVCGLTRPQDAKAAYDA-GAVYGGLIFVEKSPRYVSLEQAQEI 301 (454)
T ss_pred HHHHHh-cCCEEEECHHHcCCCCHHHHHHHHh-ccccccCCCCCHHHHHHHHhC-CCCEEeeEeCCCCCCCCCHHHHHHH
Confidence 888776 7999999888887655443222111 133345566899999999997 9999999843334455899999999
Q ss_pred hcccc
Q 018446 334 LEGER 338 (355)
Q Consensus 334 ~~~~~ 338 (355)
...++
T Consensus 302 ~~~l~ 306 (454)
T PRK09427 302 IAAAP 306 (454)
T ss_pred HHhCC
Confidence 87644
No 134
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=90.97 E-value=2.4 Score=41.36 Aligned_cols=127 Identities=22% Similarity=0.181 Sum_probs=82.5
Q ss_pred ccHHHHHHhhhhcCCCceEEeEeeecC---C-C------CCCCCCCCCHHHHHHHHHHcCceEEEE---eccCCCCCCCH
Q 018446 161 RDFIGALMAANQRTGLPALIAEVKKAS---P-S------RGILREDFDPVEIARSYEKGGAACLSI---LTDEKYFKGSF 227 (355)
Q Consensus 161 rdF~~aL~~~~~~~g~~aVIAEvKRaS---P-S------kG~I~~~~Dp~~iA~~Ye~~GAaaISV---LTD~~fF~GS~ 227 (355)
.+|+.-+..... .-...|=...||.. + . .|.-....|+.+.|+.+++.||-=|-+ --|-.-=+=++
T Consensus 110 p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl 188 (256)
T COG0107 110 PELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDL 188 (256)
T ss_pred hHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCH
Confidence 356666655431 11223334667753 2 1 144455789999999999999987743 33444444468
Q ss_pred HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCH--HHHHHHHHHHHHcCCc
Q 018446 228 ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPD--LDIRYMTKICKLLGLT 290 (355)
Q Consensus 228 edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~--~~L~~L~~~A~~LGLe 290 (355)
+.++.|+.+ +++||+..-=-=.+--++||...| |||+| -++++-. -.+.++-+|-.+-|++
T Consensus 189 ~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~~adAaL-AAsiFH~~~~~i~evK~yL~~~gi~ 252 (256)
T COG0107 189 ELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEGKADAAL-AASIFHFGEITIGEVKEYLAEQGIE 252 (256)
T ss_pred HHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhcCccHHH-hhhhhhcCcccHHHHHHHHHHcCCC
Confidence 999999996 999999877666777888999888 99965 4555422 2344555555555554
No 135
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=90.86 E-value=3 Score=42.81 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=84.6
Q ss_pred ceEEeEeee-cCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCC----------CCCCHHHH----HHHHhcCCCCC
Q 018446 177 PALIAEVKK-ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKY----------FKGSFENL----EAVRSAGVKCP 241 (355)
Q Consensus 177 ~aVIAEvKR-aSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~f----------F~GS~edL----~~VR~a~v~lP 241 (355)
..||+-+-- .|+. |-.++|+..++.||++|=+..=-.+ |+=+.+.+ ..||++ +++|
T Consensus 114 ~pvIaSi~~~~s~~--------~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iP 184 (385)
T PLN02495 114 RILIASIMEEYNKD--------AWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVP 184 (385)
T ss_pred CcEEEEccCCCCHH--------HHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCc
Confidence 368888743 3332 5668899999999999988653211 22345666 444764 7899
Q ss_pred eecc---ccccCHHHHHH-HHHcCCcchHHHHhcCCH------------------------------HHHHHHHHHHHHc
Q 018446 242 LLCK---EFIVDAWQIYY-ARTKGADAVLLIAAVLPD------------------------------LDIRYMTKICKLL 287 (355)
Q Consensus 242 VLrK---DFIIdpyQI~e-Ar~~GADAVLLIaaiL~~------------------------------~~L~~L~~~A~~L 287 (355)
|+-| |+ -|.-++.+ |...|||+|.+|=.+.+. --|....++++.+
T Consensus 185 v~vKLsPn~-t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~ 263 (385)
T PLN02495 185 VWAKMTPNI-TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMM 263 (385)
T ss_pred eEEEeCCCh-hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 9888 33 24455666 778999999997655420 0111122233433
Q ss_pred C--------CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 288 G--------LTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 288 G--------LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
. +-..==|+|.+|+-+.+.+ ||++|.|---.+.
T Consensus 264 ~~~~~~~ipIiGvGGI~s~~Da~e~i~a-GAs~VQv~Ta~~~ 304 (385)
T PLN02495 264 KSEFPEDRSLSGIGGVETGGDAAEFILL-GADTVQVCTGVMM 304 (385)
T ss_pred hhhccCCCcEEEECCCCCHHHHHHHHHh-CCCceeEeeeeee
Confidence 2 2233357999999998886 9999988655443
No 136
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.70 E-value=0.17 Score=53.09 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=60.9
Q ss_pred EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-------eccCCCCC-C--CHHHHHHHHhc--CCCCCeeccc
Q 018446 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-------LTDEKYFK-G--SFENLEAVRSA--GVKCPLLCKE 246 (355)
Q Consensus 179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-------LTD~~fF~-G--S~edL~~VR~a--~v~lPVLrKD 246 (355)
.|.++|+..|..-++..+.--.+-|+...++||++|-| +|-....+ | .+.-+..++++ ..++||+.-=
T Consensus 272 ~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG 351 (495)
T PTZ00314 272 MIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADG 351 (495)
T ss_pred HHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC
Confidence 46667776665433332322235778888999999944 44432222 1 12232233221 2578999988
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
=|-++.+|..|.++|||+|.+=-.+..
T Consensus 352 Gi~~~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 352 GIKNSGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred CCCCHHHHHHHHHcCCCEEEECchhcc
Confidence 899999999999999999987554443
No 137
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.68 E-value=0.26 Score=48.84 Aligned_cols=71 Identities=25% Similarity=0.223 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCceEEEE-------eccCCCCC---CCHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446 200 VEIARSYEKGGAACLSI-------LTDEKYFK---GSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISV-------LTD~~fF~---GS~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL 267 (355)
.+.|+...++||++|.| .|.....+ +.+.-+..++++ ..++||+.--=|-++-+|..|..+|||+|.+
T Consensus 146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 46788888999999987 33222111 233344444432 1469999888888999999999999999987
Q ss_pred HHh
Q 018446 268 IAA 270 (355)
Q Consensus 268 Iaa 270 (355)
=-.
T Consensus 226 Gt~ 228 (325)
T cd00381 226 GSL 228 (325)
T ss_pred cch
Confidence 333
No 138
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=90.63 E-value=2.1 Score=42.61 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCC----HHHHHHHHHHHHHcCCcEEEEeC
Q 018446 223 FKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP----DLDIRYMTKICKLLGLTALVEVH 296 (355)
Q Consensus 223 F~GS~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~----~~~L~~L~~~A~~LGLeaLVEVH 296 (355)
.+=+++.|..+++. .++||+ +-==|-+|-++.+...+|||+|...-++.. .+..+.|.+.... -+
T Consensus 182 ~~~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~--------~~ 252 (287)
T TIGR00343 182 LRVPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH--------YD 252 (287)
T ss_pred cCCCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH--------cC
Confidence 34678999999985 789998 554455999999999999999999999983 3345556655444 45
Q ss_pred CHHHHHHHh-ccCCCeEEEeeCCCCC
Q 018446 297 DEREMDRVL-GIEGIELIGINNRNLE 321 (355)
Q Consensus 297 ~~eELerAl-~l~ga~iIGINNRdL~ 321 (355)
|.+-+..+- .+ |-.+.|||-..|.
T Consensus 253 ~~~~~~e~s~~~-~~~m~g~~~~~~~ 277 (287)
T TIGR00343 253 NPEKLAEVSKDL-GEAMKGISISSIS 277 (287)
T ss_pred CHHHHHHHHccc-cccCCCCccccCC
Confidence 666555543 44 6679999988775
No 139
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=90.52 E-value=1.6 Score=42.53 Aligned_cols=150 Identities=25% Similarity=0.257 Sum_probs=100.3
Q ss_pred CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH---HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~---edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
++.--||+++|+.|.+.||+=|-.|-=.-...|.- +-+..+.+ .+.+|+--=-=|=+.--+.+-..+|||-|=+..
T Consensus 26 lrd~GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~-~vfiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAE-QVFIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred hhhcCChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHh-hceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 45556999999999999999998876666666754 44445544 378898766666666667777888999999988
Q ss_pred hcCCHHHHHHHHHHHHHcCCcEEEE----------------eCC--------HHHHH---HHhccCCCe--EEEeeCCCC
Q 018446 270 AVLPDLDIRYMTKICKLLGLTALVE----------------VHD--------EREMD---RVLGIEGIE--LIGINNRNL 320 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGLeaLVE----------------VH~--------~eELe---rAl~l~ga~--iIGINNRdL 320 (355)
+.+.+.+| ..+.|..+|-+++|= |.+ ..-++ ++-++ ||= ++--=+||=
T Consensus 105 aAv~~p~l--I~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~-GAGEIlLtsmD~DG 181 (256)
T COG0107 105 AAVKDPEL--ITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEEL-GAGEILLTSMDRDG 181 (256)
T ss_pred hHhcChHH--HHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHc-CCceEEEeeecccc
Confidence 88876554 347889999999872 211 11122 22222 443 333335555
Q ss_pred CccccChhhHHhhhccccccccccCc
Q 018446 321 ETFEVDNSNTKKLLEGERGEIIRQKN 346 (355)
Q Consensus 321 ~TfevDl~~t~~L~~~~~~~~l~~~~ 346 (355)
..--.|++.+..+.+..+-+.|-..|
T Consensus 182 tk~GyDl~l~~~v~~~v~iPvIASGG 207 (256)
T COG0107 182 TKAGYDLELTRAVREAVNIPVIASGG 207 (256)
T ss_pred cccCcCHHHHHHHHHhCCCCEEecCC
Confidence 56667888888887766655554433
No 140
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.43 E-value=1.7 Score=41.38 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=91.0
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-CCCCC--eeccccccCHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCP--LLCKEFIVDAWQI 254 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-~v~lP--VLrKDFIIdpyQI 254 (355)
.||+=+.-.+|. +..+++++..++|..+|=|--.. .+.++-++.+++. .-..| ++-==-|+++-|.
T Consensus 16 ~vi~Vvr~~~~~--------~a~~~~~al~~gGi~~iEiT~~t---p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a 84 (222)
T PRK07114 16 GMVPVFYHADVE--------VAKKVIKACYDGGARVFEFTNRG---DFAHEVFAELVKYAAKELPGMILGVGSIVDAATA 84 (222)
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCC---CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHH
Confidence 466666444443 56789999999999998875443 2577777777532 11334 3444457899999
Q ss_pred HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
..|..+||+-++- -.++ .+++++|++.|+-.+==+-|..|+..|+++ |+++|=+.=
T Consensus 85 ~~a~~aGA~FiVs--P~~~----~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~-Ga~~vKlFP 140 (222)
T PRK07114 85 ALYIQLGANFIVT--PLFN----PDIAKVCNRRKVPYSPGCGSLSEIGYAEEL-GCEIVKLFP 140 (222)
T ss_pred HHHHHcCCCEEEC--CCCC----HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECc
Confidence 9999999997542 2344 478999999999999999999999999997 998886654
No 141
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=90.30 E-value=3.9 Score=37.85 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=44.0
Q ss_pred HHHHHHHcCCcchHHHHhcCC----H--------HHHHHHHHHHHHcCCcEEEEeC-----------CHHHHHHHhccCC
Q 018446 253 QIYYARTKGADAVLLIAAVLP----D--------LDIRYMTKICKLLGLTALVEVH-----------DEREMDRVLGIEG 309 (355)
Q Consensus 253 QI~eAr~~GADAVLLIaaiL~----~--------~~L~~L~~~A~~LGLeaLVEVH-----------~~eELerAl~l~g 309 (355)
-|..|+.+||..|.+.....+ . +.++++.++|.+.|+...+|.| |.+++.+.++.-+
T Consensus 89 ~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~ 168 (254)
T TIGR03234 89 AIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVG 168 (254)
T ss_pred HHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhC
Confidence 466788999988766544321 1 2478899999999999999975 5666666664223
Q ss_pred CeEEEee
Q 018446 310 IELIGIN 316 (355)
Q Consensus 310 a~iIGIN 316 (355)
.+-+||+
T Consensus 169 ~~~~~i~ 175 (254)
T TIGR03234 169 RENLKLQ 175 (254)
T ss_pred CCCEeEe
Confidence 3445553
No 142
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=89.99 E-value=6.4 Score=35.75 Aligned_cols=121 Identities=25% Similarity=0.206 Sum_probs=75.2
Q ss_pred CceEEeEeeecCCCCCCCCCCCCHH-HHHHHHHHcCce-EEEEeccCCCCCCCHHHHHHHHhcCCCCCe--eccccccCH
Q 018446 176 LPALIAEVKKASPSRGILREDFDPV-EIARSYEKGGAA-CLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVDA 251 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp~-~iA~~Ye~~GAa-aISVLTD~~fF~GS~edL~~VR~a~v~lPV--LrKDFIIdp 251 (355)
...++.|+|-..+. ....+ .+...+.+.|.. .=.+++ .| +.+.|..+|+...++|+ +..+..-+.
T Consensus 100 ~~~l~iEiK~~~~~------~~~~~~~v~~~l~~~~~~~~~v~~~---Sf--~~~~l~~~~~~~p~~~~~~l~~~~~~~~ 168 (229)
T cd08562 100 GLGLNLEIKPDPGD------EALTARVVAAALRELWPHASKLLLS---SF--SLEALRAARRAAPELPLGLLFDTLPADW 168 (229)
T ss_pred CCEEEEEECCCCCc------cHHHHHHHHHHHHHhcCCcCCEEEE---CC--CHHHHHHHHHhCCCCcEEEEecCCCcCH
Confidence 35799999954442 11122 345555555542 111111 12 67888888875444543 333322222
Q ss_pred HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEE
Q 018446 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIG 314 (355)
Q Consensus 252 yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIG 314 (355)
...++..|++++.+-...+++ .+++.+++.|+.+.+= |.+.+++++++.+ |++-|-
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~-gVdgii 225 (229)
T cd08562 169 --LELLAALGAVSIHLNYRGLTE----EQVKALKDAGYKLLVYTVNDPARAAELLEW-GVDAIF 225 (229)
T ss_pred --HHHHHHcCCeEEecChhhCCH----HHHHHHHHCCCEEEEEeCCCHHHHHHHHHC-CCCEEE
Confidence 234567888887766566654 5899999999999976 6779999999987 877653
No 143
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=89.97 E-value=0.77 Score=45.37 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHcCceEEEEecc--CCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHH-HcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSILTD--EKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD--~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr-~~GADAVLLIaai 271 (355)
+..++|+.++++|+++|.|-.- ...|.| +++.+..++++ +++||+..-=|.++-++.+.. ..|||+|.+==++
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~ 227 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGA 227 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHh
Confidence 4679999999999999999543 345666 58889999986 899999999999999999987 5899999987778
Q ss_pred CCHHHHH
Q 018446 272 LPDLDIR 278 (355)
Q Consensus 272 L~~~~L~ 278 (355)
|.+-.+-
T Consensus 228 l~nP~lf 234 (312)
T PRK10550 228 LNIPNLS 234 (312)
T ss_pred HhCcHHH
Confidence 8765443
No 144
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.95 E-value=2.1 Score=39.02 Aligned_cols=131 Identities=20% Similarity=0.258 Sum_probs=78.5
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-------cCCCCCCCH--------HHHHHHHhcCCCCC
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-------DEKYFKGSF--------ENLEAVRSAGVKCP 241 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-------D~~fF~GS~--------edL~~VR~a~v~lP 241 (355)
..+|+-+--.+|. +..+.|+...++|+++|-+.. -..-|+|++ +-++.+|++ +.+|
T Consensus 55 ~p~~~qi~g~~~~--------~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~~~ 125 (231)
T cd02801 55 RPLIVQLGGSDPE--------TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VPIP 125 (231)
T ss_pred CCEEEEEcCCCHH--------HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cCCC
Confidence 4577777544332 345677777788999998862 223466654 446677775 6688
Q ss_pred eeccccc-c----CHHHHH-HHHHcCCcchHHHHh-----cCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccC
Q 018446 242 LLCKEFI-V----DAWQIY-YARTKGADAVLLIAA-----VLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIE 308 (355)
Q Consensus 242 VLrKDFI-I----dpyQI~-eAr~~GADAVLLIaa-----iL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ 308 (355)
+-.|--. . +..++. ....+|+|.|.+... ..+..++..+.++.+..++-.+. -++|.+++++++...
T Consensus 126 v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~ 205 (231)
T cd02801 126 VTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT 205 (231)
T ss_pred EEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhc
Confidence 8776321 1 222332 344568988854332 12233555555555555554333 367888888888754
Q ss_pred CCeEEEee
Q 018446 309 GIELIGIN 316 (355)
Q Consensus 309 ga~iIGIN 316 (355)
|++.|++-
T Consensus 206 gad~V~ig 213 (231)
T cd02801 206 GVDGVMIG 213 (231)
T ss_pred CCCEEEEc
Confidence 78888775
No 145
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.81 E-value=1 Score=40.24 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHcCceEEEEe--ccCCCC--CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 198 DPVEIARSYEKGGAACLSIL--TDEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL--TD~~fF--~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
++.+..+ +.+.|++.+.+- .+...| ..+.+.++.+++. .++|+ .=|.+|.+-++.++..+|||++.+--++..
T Consensus 115 t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i-~~~GGI~~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 115 DPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKV-AVAGGITPDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred CHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCE-EEECCcCHHHHHHHHhcCCCEEEEeehhcC
Confidence 5666766 666799987762 233444 3567888888874 56777 458999999999999999999999888876
Q ss_pred HHHHHHH
Q 018446 274 DLDIRYM 280 (355)
Q Consensus 274 ~~~L~~L 280 (355)
.++.++.
T Consensus 192 ~~d~~~~ 198 (202)
T cd04726 192 AADPAEA 198 (202)
T ss_pred CCCHHHH
Confidence 6555443
No 146
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=89.71 E-value=3.7 Score=39.51 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=81.3
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHc--CceEEEEeccCC-------CCCCCHHH----HHHHHhcCCCCCeec
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG--GAACLSILTDEK-------YFKGSFEN----LEAVRSAGVKCPLLC 244 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~--GAaaISVLTD~~-------fF~GS~ed----L~~VR~a~v~lPVLr 244 (355)
.+|+-+--.+|. +..+.|+.+++. +|++|=++.--. .++++.+. +..+|++ +++||..
T Consensus 92 pl~~qi~g~~~~--------~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~v 162 (300)
T TIGR01037 92 PLIASVYGSSVE--------EFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFA 162 (300)
T ss_pred cEEEEeecCCHH--------HHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEE
Confidence 367777433331 345667777765 388888765432 23345554 4566775 7899998
Q ss_pred ccc--ccCHHHHHH-HHHcCCcchHHHHhc--------------------CC-H----HHHHHHHHHHHHcCCcEEE--E
Q 018446 245 KEF--IVDAWQIYY-ARTKGADAVLLIAAV--------------------LP-D----LDIRYMTKICKLLGLTALV--E 294 (355)
Q Consensus 245 KDF--IIdpyQI~e-Ar~~GADAVLLIaai--------------------L~-~----~~L~~L~~~A~~LGLeaLV--E 294 (355)
|== .-+...+.+ +..+|+|+|.++-.+ ++ + -.+..+.++.+.+++..+. -
T Consensus 163 Ki~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GG 242 (300)
T TIGR01037 163 KLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGG 242 (300)
T ss_pred ECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECC
Confidence 821 112334443 567899999875221 11 1 1234555666667876554 5
Q ss_pred eCCHHHHHHHhccCCCeEEEeeCC
Q 018446 295 VHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 295 VH~~eELerAl~l~ga~iIGINNR 318 (355)
|+|.+++++++.. ||+.|+|---
T Consensus 243 I~s~~da~~~l~~-GAd~V~igr~ 265 (300)
T TIGR01037 243 ITSFEDALEFLMA-GASAVQVGTA 265 (300)
T ss_pred CCCHHHHHHHHHc-CCCceeecHH
Confidence 8999999999985 9999988543
No 147
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.69 E-value=0.99 Score=44.41 Aligned_cols=93 Identities=26% Similarity=0.261 Sum_probs=69.2
Q ss_pred ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-cCCCCC---CCHHHHHHHHhc
Q 018446 161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFK---GSFENLEAVRSA 236 (355)
Q Consensus 161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~---GS~edL~~VR~a 236 (355)
..+.+.++.. | ..|++.+ +| .+.|+..++.||++|.|-- |..-.. ++++.|..++++
T Consensus 99 ~~~i~~lk~~----g-~~v~~~v----~s----------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~ 159 (307)
T TIGR03151 99 GKYIPRLKEN----G-VKVIPVV----AS----------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDA 159 (307)
T ss_pred HHHHHHHHHc----C-CEEEEEc----CC----------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHH
Confidence 4477777653 3 4677766 22 3577888889999998732 222221 368888999985
Q ss_pred CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 237 GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 237 ~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
+++||+.-==|-++-++..|..+|||+|.+=-+.|-
T Consensus 160 -~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 160 -VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred -hCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 899999998899999999999999999998666653
No 148
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.67 E-value=1.8 Score=40.78 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCC-CCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEK-YFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~-fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
.||.++|+.|.+. |..|=+ .|-. -..| +++.++.+++. +.+||..-==|=+.-++......|||.|.+=-+.+
T Consensus 30 ~dp~~~a~~~~~~-~~~l~i-vDldga~~g~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 30 GDPVEIALRFSEY-VDKIHV-VDLDGAFEGKPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CCHHHHHHHHHHh-CCEEEE-EECcchhcCCcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 3899999999997 887777 7766 4557 56777788775 88999877777788889899999999988766666
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 018446 273 PDLDIRYMTKICKLLGLTALVEV 295 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVEV 295 (355)
+++-++ ++++.+| ...|-+
T Consensus 107 ~~~~l~---~~~~~~g-~ivvsl 125 (228)
T PRK04128 107 DLEFLE---KVTSEFE-GITVSL 125 (228)
T ss_pred CHHHHH---HHHHHcC-CEEEEE
Confidence 654444 4455555 344433
No 149
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=89.66 E-value=1.6 Score=41.12 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=68.0
Q ss_pred CCCCCCCCCHHHHHHHHHHcCceEEEEec---cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH---cCCc
Q 018446 190 RGILREDFDPVEIARSYEKGGAACLSILT---DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART---KGAD 263 (355)
Q Consensus 190 kG~I~~~~Dp~~iA~~Ye~~GAaaISVLT---D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~---~GAD 263 (355)
.|+-....++.++++.+++.||..|-+.. |..+=+=+++.+..+++. +++||+.-==|-+.-++.+... .|||
T Consensus 139 ~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 139 RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCcc
Confidence 46666677999999999999999887653 222322246778888885 8999999888888889888764 4999
Q ss_pred chHHHHhcCCH-HHHHHHHHH
Q 018446 264 AVLLIAAVLPD-LDIRYMTKI 283 (355)
Q Consensus 264 AVLLIaaiL~~-~~L~~L~~~ 283 (355)
+|++=-+++.. -.++++.++
T Consensus 218 gV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 218 GAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred EEEEeHHHHcCCCCHHHHHHH
Confidence 99886666543 245554444
No 150
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.53 E-value=2.5 Score=41.65 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhcCCCCCeeccccccC---HHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a~v~lPVLrKDFIId---pyQI~eAr~~GADAVLLIaa 270 (355)
+| ++|.+-.++|+ +.+|.-. + .+.+ .|.++|+. ++.|+=..-|.+. .-|+......|++.|.+- .
T Consensus 24 ~~-~la~avs~aGg--lG~l~~~-~--~~~~~l~~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~-~ 95 (307)
T TIGR03151 24 TG-SLAAAVSNAGG--LGIIGAG-N--APPDVVRKEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG-A 95 (307)
T ss_pred CH-HHHHHHHhCCC--cceeccc-c--CCHHHHHHHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc-C
Confidence 44 46767776663 3333321 1 1344 34566663 4555311111111 346666788999998763 2
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tf 323 (355)
-.+. .+++..+..|...+..|.+.++.+++.++ |++.|.+.+++-...
T Consensus 96 g~p~----~~i~~lk~~g~~v~~~v~s~~~a~~a~~~-GaD~Ivv~g~eagGh 143 (307)
T TIGR03151 96 GNPG----KYIPRLKENGVKVIPVVASVALAKRMEKA-GADAVIAEGMESGGH 143 (307)
T ss_pred CCcH----HHHHHHHHcCCEEEEEcCCHHHHHHHHHc-CCCEEEEECcccCCC
Confidence 2332 47788888899999999999999999997 999999999866544
No 151
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.21 E-value=1.6 Score=41.55 Aligned_cols=72 Identities=31% Similarity=0.283 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHcCceEEEEe--c-cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHH-HcCCcchHH
Q 018446 195 EDFDPVEIARSYEKGGAACLSIL--T-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLL 267 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVL--T-D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr-~~GADAVLL 267 (355)
.+.++.++++.+++.||..|.+. + |..+-+=+++.+..+++. +++||+.-==|-+.-.+.++. ..|+|+|++
T Consensus 150 ~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 150 LKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 46789999999999999999886 2 233444467888899886 899999998888988999987 799999864
No 152
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=89.17 E-value=2.9 Score=41.45 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=60.0
Q ss_pred CHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCC----HHHHHHHHHHHHHcCCcEEEEeCCHH
Q 018446 226 SFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP----DLDIRYMTKICKLLGLTALVEVHDER 299 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~----~~~L~~L~~~A~~LGLeaLVEVH~~e 299 (355)
+++.|+.+++. +++||. +-==|-+|-|+.++..+|||+|+..-++.. ....+.|.+.-..++ .-|-..
T Consensus 182 d~elLk~l~~~-~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~-----~~~~~~ 255 (283)
T cd04727 182 PYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYD-----DPEILA 255 (283)
T ss_pred CHHHHHHHHHh-cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcC-----CHHHHH
Confidence 67889999985 789986 544455999999999999999999999983 334555655444422 122233
Q ss_pred HHHHHhccCCCeEEEeeCCCCC
Q 018446 300 EMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 300 ELerAl~l~ga~iIGINNRdL~ 321 (355)
|+.. .+ |-.+.|+|-+.|+
T Consensus 256 e~~~--~~-~~~m~~~~~~~~~ 274 (283)
T cd04727 256 EVSE--GL-GEAMVGIDIASLK 274 (283)
T ss_pred HHHc--cc-ccCCCCcccccCC
Confidence 3333 33 5568888877654
No 153
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=89.12 E-value=1.3 Score=45.42 Aligned_cols=181 Identities=14% Similarity=0.111 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHHHHHHhccCC-HHHHHHhhhc-CCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHH
Q 018446 125 NILEEIVWHKDVEVTQLKQRRP-LSMLKNALDN-APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI 202 (355)
Q Consensus 125 ~iLe~Iv~~K~~EV~~~k~~~p-l~~L~~~l~~-~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~i 202 (355)
.|.+-=....+.-+++.-...| ..++.+.-.. ..|-..|.. .+- ...|-+|.=+-.-++. +..++
T Consensus 124 ~~~~~ny~at~~ai~~a~~~~p~~~~~~~~~~~~~h~~~~~~~-~~~----~~~p~L~vALD~~~~~--------~A~~i 190 (391)
T PRK13307 124 KIYQYNYGATKLAIKRALEGFPDVDKVLYEKDRALHPIMGFKV-TRL----WDPPYLQVALDLPDLE--------EVERV 190 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHhhhhcccCCccccch-hhh----cccceEEEecCCCCHH--------HHHHH
Confidence 3444444445555555444444 4555443222 233333332 111 1235566655322221 34455
Q ss_pred HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHH--HHHHHHcCCcchHHHHhcCCHHHHHHH
Q 018446 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ--IYYARTKGADAVLLIAAVLPDLDIRYM 280 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQ--I~eAr~~GADAVLLIaaiL~~~~L~~L 280 (355)
++.....+..-+-|=|. -|....++-++.+|+.+.+.||...==+.|+-. +..+..+|||.+.+.+.. +.+.+...
T Consensus 191 ~~~l~~~~~~~iKvG~~-L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ti~~a 268 (391)
T PRK13307 191 LSQLPKSDHIIIEAGTP-LIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PISTIEKA 268 (391)
T ss_pred HHhcccccceEEEECHH-HHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHHHHHHH
Confidence 65554444445566665 356666899999998655667655333333333 457788999999888765 45579999
Q ss_pred HHHHHHcCCcEEEE---eCCHHHHHHHhccCCCeEEEeeC-CCCC
Q 018446 281 TKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGINN-RNLE 321 (355)
Q Consensus 281 ~~~A~~LGLeaLVE---VH~~eELerAl~l~ga~iIGINN-RdL~ 321 (355)
++.++++|+.+.|+ ++|..|.-+.+.. +.++|++-. .|-.
T Consensus 269 i~~akk~GikvgVD~lnp~tp~e~i~~l~~-~vD~Vllht~vdp~ 312 (391)
T PRK13307 269 IHEAQKTGIYSILDMLNVEDPVKLLESLKV-KPDVVELHRGIDEE 312 (391)
T ss_pred HHHHHHcCCEEEEEEcCCCCHHHHHHHhhC-CCCEEEEccccCCC
Confidence 99999999999998 6677666665553 788887763 4443
No 154
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=89.01 E-value=3.6 Score=41.32 Aligned_cols=113 Identities=8% Similarity=0.106 Sum_probs=82.1
Q ss_pred HHHHHHHHcC--ceEEEEeccCCCCCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHHHHHcCCcchHHH--------H
Q 018446 201 EIARSYEKGG--AACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLI--------A 269 (355)
Q Consensus 201 ~iA~~Ye~~G--AaaISVLTD~~fF~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLI--------a 269 (355)
+.+....++| +++|-+-+--.+-..-++.++.+|+. .+.| |+.+.. .++-+......+|||+|..= .
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~-~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V~~G~G~~~~t 174 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH-LPDSFVIAGNV-GTPEAVRELENAGADATKVGIGPGKVCIT 174 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh-CCCCEEEEecC-CCHHHHHHHHHcCcCEEEECCCCCccccc
Confidence 4555666667 68877766555555667788889885 6667 555554 79999999999999998632 0
Q ss_pred h-----cCCHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEee
Q 018446 270 A-----VLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 270 a-----iL~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGIN 316 (355)
+ -.++-++..+.+.+....+..+. -|.+-.|+-+|+.+ ||+.+++-
T Consensus 175 r~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~-GAd~Vmig 227 (321)
T TIGR01306 175 KIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GASMVMIG 227 (321)
T ss_pred eeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHc-CCCEEeec
Confidence 0 01223677888888888766554 48999999999997 99988875
No 155
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.92 E-value=1 Score=42.86 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHcCceEEEEec-------c-----------CCCCCC------CHHHHHHHHhcCC--CCCeeccccccCH
Q 018446 198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDA 251 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT-------D-----------~~fF~G------S~edL~~VR~a~v--~lPVLrKDFIIdp 251 (355)
+..++|+..+++||++|.+-. + ..++.| +++.+..+|+. + ++||+.-==|-++
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~-~~~~ipiia~GGI~~~ 255 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR-LQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh-cCCCCCEEEECCCCCH
Confidence 467899999999999999841 1 011222 36778888885 6 8999998888899
Q ss_pred HHHHHHHHcCCcchHHHHhcCCH
Q 018446 252 WQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 252 yQI~eAr~~GADAVLLIaaiL~~ 274 (355)
-++.+...+|||+|.+--+++.+
T Consensus 256 ~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 256 EDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred HHHHHHHHcCccHheEcHHHHhc
Confidence 99999999999999887666643
No 156
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.91 E-value=1.8 Score=41.87 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=57.2
Q ss_pred CCHHHHHHHHhcCCCCCee-ccccccCHHH------HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--
Q 018446 225 GSFENLEAVRSAGVKCPLL-CKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-- 295 (355)
Q Consensus 225 GS~edL~~VR~a~v~lPVL-rKDFIIdpyQ------I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-- 295 (355)
.-++.++++|+...++|++ +--+= .-|| +.+++.+|+|++|+. =|+.++..++.+.|+++||+.+.=|
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N-~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYN-PIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeccc-HHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 5578888898434788944 33221 1133 889999999998873 4667899999999999999998722
Q ss_pred -CCHHHHHHHhcc
Q 018446 296 -HDEREMDRVLGI 307 (355)
Q Consensus 296 -H~~eELerAl~l 307 (355)
.+.+.++.....
T Consensus 152 ~t~~eri~~i~~~ 164 (258)
T PRK13111 152 TTTDERLKKIASH 164 (258)
T ss_pred CCCHHHHHHHHHh
Confidence 335667776654
No 157
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.62 E-value=1.3 Score=44.82 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccC------CCCCC----CHHH----HHHHHhcCCCCCeecc---ccccCHHHHHH-HHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDE------KYFKG----SFEN----LEAVRSAGVKCPLLCK---EFIVDAWQIYY-ART 259 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~------~fF~G----S~ed----L~~VR~a~v~lPVLrK---DFIIdpyQI~e-Ar~ 259 (355)
+..++|+..++.||++|-++.-- +-++. ..+. ++.+++. +++||..| |+- +.-.+.+ +..
T Consensus 114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~p~~~-~~~~~a~~~~~ 191 (420)
T PRK08318 114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLTPNIT-DIREPARAAKR 191 (420)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcCCCcc-cHHHHHHHHHH
Confidence 46688888899999999887432 21222 2333 4555664 78999877 332 2334444 567
Q ss_pred cCCcchHHHHhcCC-------------------------HH-----HHHHHHHHHHHcCC--cEEE---EeCCHHHHHHH
Q 018446 260 KGADAVLLIAAVLP-------------------------DL-----DIRYMTKICKLLGL--TALV---EVHDEREMDRV 304 (355)
Q Consensus 260 ~GADAVLLIaaiL~-------------------------~~-----~L~~L~~~A~~LGL--eaLV---EVH~~eELerA 304 (355)
+|||+|.+|-.+.+ .. .|+.+.++++.++. -+|+ -|+|.+|+.+.
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~ 271 (420)
T PRK08318 192 GGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEF 271 (420)
T ss_pred CCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHH
Confidence 89999996433322 11 25555566665532 1333 58999999999
Q ss_pred hccCCCeEEEeeCCCCC
Q 018446 305 LGIEGIELIGINNRNLE 321 (355)
Q Consensus 305 l~l~ga~iIGINNRdL~ 321 (355)
+.+ ||+.|+|--=.+.
T Consensus 272 i~a-GA~~Vqi~ta~~~ 287 (420)
T PRK08318 272 ILL-GAGTVQVCTAAMQ 287 (420)
T ss_pred HHh-CCChheeeeeecc
Confidence 986 9999988655443
No 158
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=88.57 E-value=3.2 Score=39.40 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc---cccc--------CHHHHHHHHHcCCc
Q 018446 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK---EFIV--------DAWQIYYARTKGAD 263 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK---DFII--------dpyQI~eAr~~GAD 263 (355)
...|+.++.+.-.++|++|+.|. + |......... ..+++++.+ .|-. --.++.+|...|||
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~--p----~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~ 105 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLH--K----GIVRRGHRGY--GKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGAD 105 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC--c----chhhhccccc--CCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCC
Confidence 45688889998888888876654 3 2222221111 134454433 3322 11458899999999
Q ss_pred chHHHHhcCCH------HHHHHHHHHHHHcCCcEEEEeC---------CHHHH----HHHhccCCCeEEEeeCCCCCccc
Q 018446 264 AVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH---------DEREM----DRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 264 AVLLIaaiL~~------~~L~~L~~~A~~LGLeaLVEVH---------~~eEL----erAl~l~ga~iIGINNRdL~Tfe 324 (355)
+|-+-....+. +++..+.+.|++.|+-.+|.++ +.+++ +.+.++ ||+.|++. |.
T Consensus 106 ~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~-GADyikt~------~~ 178 (258)
T TIGR01949 106 AVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAEL-GADIVKTP------YT 178 (258)
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHH-CCCEEecc------CC
Confidence 99887765532 2456667788889998887443 33343 334454 99999985 45
Q ss_pred cChhhHHhhhcc
Q 018446 325 VDNSNTKKLLEG 336 (355)
Q Consensus 325 vDl~~t~~L~~~ 336 (355)
.+++...++.+.
T Consensus 179 ~~~~~l~~~~~~ 190 (258)
T TIGR01949 179 GDIDSFRDVVKG 190 (258)
T ss_pred CCHHHHHHHHHh
Confidence 677777777653
No 159
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=88.56 E-value=1.5 Score=44.61 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHcCceEEEEecc---CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 198 DPVEIARSYEKGGAACLSILTD---EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD---~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
++.+.++.+.+.|++-|.+-.- ..+-...++.|+.+++. .++||+. ++.|.+-.+.++..+|||+|.+.-++...
T Consensus 119 t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-~~iPI~a-~GGI~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 119 DPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-VSIPIAV-AGGLDAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred CHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-CCCcEEE-ECCCCHHHHHHHHHcCCCEEEEChHHcCC
Confidence 3556677888889999976421 11113557899999875 7899866 88999999999999999999999888875
Q ss_pred HHHHHHH----HHHHH---cCCcEEEEeCCHHHHHHHhcc
Q 018446 275 LDIRYMT----KICKL---LGLTALVEVHDEREMDRVLGI 307 (355)
Q Consensus 275 ~~L~~L~----~~A~~---LGLeaLVEVH~~eELerAl~l 307 (355)
++.+..+ +..++ ..++-+-+--+.+.+++...+
T Consensus 197 ~d~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (430)
T PRK07028 197 ADVTEAARKIREAIDSGKPVKIDKFKKSLDEEIREIFMQV 236 (430)
T ss_pred CCHHHHHHHHHHHHhccCCccccccccCCCHHHHHHhcCC
Confidence 4443333 33322 334445555566666665444
No 160
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.55 E-value=2 Score=42.89 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHcCceEEEEeccC------CCCCCC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDE------KYFKGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA 269 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~------~fF~GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIa 269 (355)
|..++++..++.|++.|+|-.-. .++.|. .+..+.+|++ +++||+.---|.++-+..++...| ||.|.+==
T Consensus 228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR 306 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGR 306 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence 34588899999999999985422 234453 5666888886 899999999999999999999987 99999877
Q ss_pred hcCCHHHH
Q 018446 270 AVLPDLDI 277 (355)
Q Consensus 270 aiL~~~~L 277 (355)
.++.+.++
T Consensus 307 ~~iadP~~ 314 (337)
T PRK13523 307 ELLRNPYF 314 (337)
T ss_pred HHHhCccH
Confidence 77766555
No 161
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.53 E-value=0.35 Score=50.27 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=57.5
Q ss_pred EeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-------eccCCCCC---CCHHHHHHHHhc--CCCCCeecccc
Q 018446 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-------LTDEKYFK---GSFENLEAVRSA--GVKCPLLCKEF 247 (355)
Q Consensus 180 IAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-------LTD~~fF~---GS~edL~~VR~a--~v~lPVLrKDF 247 (355)
|.++|+..|..-++-.+---.+-|+...++||++|.| +|-..+-+ ..++-+..++++ ...+||+.-==
T Consensus 260 i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGG 339 (486)
T PRK05567 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGG 339 (486)
T ss_pred HHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 3345555554322322222235666777889999954 44443211 124555555542 14689999999
Q ss_pred ccCHHHHHHHHHcCCcchHHHHh
Q 018446 248 IVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 248 IIdpyQI~eAr~~GADAVLLIaa 270 (355)
|-.+.+|..|.++|||+|.+=-+
T Consensus 340 i~~~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 340 IRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred CCCHHHHHHHHHhCCCEEEECcc
Confidence 99999999999999999986333
No 162
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=88.39 E-value=0.33 Score=49.12 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=60.3
Q ss_pred EeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEE-------EeccCCCCC---CCHHHHHHHHhc--CCCCCeecccc
Q 018446 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS-------ILTDEKYFK---GSFENLEAVRSA--GVKCPLLCKEF 247 (355)
Q Consensus 180 IAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaIS-------VLTD~~fF~---GS~edL~~VR~a--~v~lPVLrKDF 247 (355)
|..+|+.-|..-+|..+.--.+-|+...++||++|= ++|-..--+ ..+.-|..++++ ...+||+..-=
T Consensus 141 ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 141 VKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred HHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 344455555444444433333577788889999984 566554332 245555555443 23689999999
Q ss_pred ccCHHHHHHHHHcCCcchHHH
Q 018446 248 IVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 248 IIdpyQI~eAr~~GADAVLLI 268 (355)
|-.+-.|..|.++|||+|.+=
T Consensus 221 Ir~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 221 CTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred cCchhHHHHHHHcCCCEEEEC
Confidence 999999999999999999874
No 163
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=88.36 E-value=1.1 Score=41.12 Aligned_cols=109 Identities=23% Similarity=0.261 Sum_probs=70.5
Q ss_pred HHHHHHcCceEEEEeccCCCC-CCC----HHHHHHHHhcCCCCCe--------eccccccCHHHHHHHHHcCCcchHHHH
Q 018446 203 ARSYEKGGAACLSILTDEKYF-KGS----FENLEAVRSAGVKCPL--------LCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD~~fF-~GS----~edL~~VR~a~v~lPV--------LrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
++.-.+.||++|.|.-.-.++ .|. .++|..++++...+|+ |..|.|..-.++ |..+|||-|=--.
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ri--a~e~GaD~IKTsT 152 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEI--AIEAGADFIKTST 152 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHH--HHHhCCCEEEcCC
Confidence 344556799999999887665 443 4577777775224564 333444444444 6788999776653
Q ss_pred hcC----CHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446 270 AVL----PDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 270 aiL----~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGI 315 (355)
... +.++.+.|.+.+. ..+-..+ =++|.+++...+.+ |++-||.
T Consensus 153 G~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~-g~~riG~ 202 (203)
T cd00959 153 GFGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEA-GATRIGT 202 (203)
T ss_pred CCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHh-ChhhccC
Confidence 332 2356666666665 3344444 48899999988887 8888875
No 164
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=88.29 E-value=9.8 Score=37.25 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=73.1
Q ss_pred CC-CCeecc-ccccCHHHHHHHHHcCCcchHHHHhcCCHHH----HHHHHHHHHHcCCcEEEE-----------------
Q 018446 238 VK-CPLLCK-EFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE----------------- 294 (355)
Q Consensus 238 v~-lPVLrK-DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~----L~~L~~~A~~LGLeaLVE----------------- 294 (355)
.+ +||... |=.-+.-.|.+|...|.+.|.+=.+-|+.++ .+++.++|+.+|.. ||
T Consensus 72 ~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~--Ve~ElG~~gg~ed~~~g~~ 149 (282)
T TIGR01859 72 MSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS--VEAELGTLGGIEDGVDEKE 149 (282)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE--EEEeeCCCcCccccccccc
Confidence 45 886555 7666677899999999999999999998764 45678899998875 44
Q ss_pred --eCCHHHHHHHhccCCCeEEEeeCCCCC-cc----ccChhhHHhhhcc
Q 018446 295 --VHDEREMDRVLGIEGIELIGINNRNLE-TF----EVDNSNTKKLLEG 336 (355)
Q Consensus 295 --VH~~eELerAl~l~ga~iIGINNRdL~-Tf----evDl~~t~~L~~~ 336 (355)
.||.+|+.++....|++.|++.--+.+ ++ .+|++.-.++.+.
T Consensus 150 ~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~ 198 (282)
T TIGR01859 150 AELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL 198 (282)
T ss_pred cccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH
Confidence 789999999997239999998754444 33 4566666666543
No 165
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=88.04 E-value=7.6 Score=37.19 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-CCCCCeecc-----ccc------cCHHHHHHHHHcCC
Q 018446 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCPLLCK-----EFI------VDAWQIYYARTKGA 262 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-~v~lPVLrK-----DFI------IdpyQI~eAr~~GA 262 (355)
...|+.++.+.-.++|++|+-|. + | .+...++. ..+.|++-+ .|. .--.++.+|...||
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~--~----~---~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Ga 107 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMH--K----G---LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGA 107 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC--H----h---HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCC
Confidence 45588889888888888776654 2 2 23332221 123444331 221 12346889999999
Q ss_pred cchHHHHhcCCH------HHHHHHHHHHHHcCCcEEEEe----------CCHHH----HHHHhccCCCeEEEeeCCCCCc
Q 018446 263 DAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV----------HDERE----MDRVLGIEGIELIGINNRNLET 322 (355)
Q Consensus 263 DAVLLIaaiL~~------~~L~~L~~~A~~LGLeaLVEV----------H~~eE----LerAl~l~ga~iIGINNRdL~T 322 (355)
|+|-+...+.+. +++..+.+.|++.|+-.+|.+ ++.++ ...+.++ ||++|=.+
T Consensus 108 d~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~-GAD~vKt~------ 180 (267)
T PRK07226 108 DAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAEL-GADIVKTN------ 180 (267)
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHH-CCCEEeeC------
Confidence 999887666542 256667788899999988862 23444 3445555 99999665
Q ss_pred cccChhhHHhhhc
Q 018446 323 FEVDNSNTKKLLE 335 (355)
Q Consensus 323 fevDl~~t~~L~~ 335 (355)
|.-|++...++.+
T Consensus 181 ~~~~~~~l~~~~~ 193 (267)
T PRK07226 181 YTGDPESFREVVE 193 (267)
T ss_pred CCCCHHHHHHHHH
Confidence 3345665556554
No 166
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=88.03 E-value=11 Score=35.75 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=78.4
Q ss_pred cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC-CH-HHHHHHHhcCCC
Q 018446 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKG-SF-ENLEAVRSAGVK 239 (355)
Q Consensus 162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G-S~-edL~~VR~a~v~ 239 (355)
.|.+.|.... +...+..|+| +|..+ -...+.....+.|.. +.-+|++ +. +.|..+|+...+
T Consensus 109 tL~evl~~~~---~~~~l~iEiK--~~~~~------~~~~v~~~l~~~~~~------~~v~i~SF~~~~~l~~~~~~~~~ 171 (265)
T cd08564 109 TLEDVLVTFK---DKLKYNIELK--GREVG------LGERVLNLVEKYGMI------LQVHFSSFLHYDRLDLLKALRPN 171 (265)
T ss_pred CHHHHHHHhc---cCcEEEEEeC--CCchh------HHHHHHHHHHHcCCC------CCEEEEecCchhHHHHHHHhCcC
Confidence 4555554432 2467999999 44321 123566666666642 2223222 22 445555553222
Q ss_pred ---CCe--ecccccc-CHH-HHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-----eCCHHHHHHHhcc
Q 018446 240 ---CPL--LCKEFIV-DAW-QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-----VHDEREMDRVLGI 307 (355)
Q Consensus 240 ---lPV--LrKDFII-dpy-QI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-----VH~~eELerAl~l 307 (355)
+|+ |..+... ... .+..++..|+++|-+-...+. ..+++.++..|+.+.+= +.+.+++++.+++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~ 247 (265)
T cd08564 172 KLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWT----EEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLEL 247 (265)
T ss_pred CCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhh----HHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHc
Confidence 443 4443321 111 245567789998876555554 46889999999999887 5779999999987
Q ss_pred CCCeEEEe
Q 018446 308 EGIELIGI 315 (355)
Q Consensus 308 ~ga~iIGI 315 (355)
|++.|--
T Consensus 248 -GvdgiiT 254 (265)
T cd08564 248 -GVDCICP 254 (265)
T ss_pred -CCCEEEc
Confidence 8875543
No 167
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=87.92 E-value=4.4 Score=37.81 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHcCceEEEEeccC-----CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDE-----KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~-----~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
+..++.+..++.|-...|+.+.. .++.++-+..+...+. -.-.|..|..+||..|.+-....
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~-------------~~~~i~~a~~lGa~~i~~~~~~~ 114 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDM-------------IKLAMDMAKEMNAGYTLISAAHA 114 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHH-------------HHHHHHHHHHhCCCEEEEcCCCC
Confidence 56778888888898887876542 2233443221111111 11356678899999886643321
Q ss_pred ----CH--------HHHHHHHHHHHHcCCcEEEEeC---------CHHHHHHHhccCCCeEEEe
Q 018446 273 ----PD--------LDIRYMTKICKLLGLTALVEVH---------DEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 273 ----~~--------~~L~~L~~~A~~LGLeaLVEVH---------~~eELerAl~l~ga~iIGI 315 (355)
+. +.|++|.++|.+.|+...+|-| |.+++.+.++.-+-+-+|+
T Consensus 115 ~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~~~v~~ 178 (275)
T PRK09856 115 GYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFS 178 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHHcCCCccee
Confidence 11 2489999999999999999976 4688888876434334554
No 168
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=87.91 E-value=3.7 Score=43.82 Aligned_cols=104 Identities=22% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC---C---HHHHHHHHhcCCCCCeecccccc---C--------HHH
Q 018446 191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKG---S---FENLEAVRSAGVKCPLLCKEFIV---D--------AWQ 253 (355)
Q Consensus 191 G~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G---S---~edL~~VR~a~v~lPVLrKDFII---d--------pyQ 253 (355)
+.++.--||+++|+.|.+.||+-|-++==.-++.| . ++-++++.+. +.+|+--===|= | --|
T Consensus 261 ~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 261 REVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred cCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHH
Confidence 34666679999999999999999988755544443 3 4556666664 788975322222 2 267
Q ss_pred HHHHHHcCCcchHHHHhcCCHH----------HHHHHHHHHHHcCCc-EEEEe
Q 018446 254 IYYARTKGADAVLLIAAVLPDL----------DIRYMTKICKLLGLT-ALVEV 295 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL~~~----------~L~~L~~~A~~LGLe-aLVEV 295 (355)
+.....+|||-|.+-.+++.+. .-.-+-+.++.+|=+ .+|-+
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsi 392 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSI 392 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEE
Confidence 8888899999999977776532 123455777888877 44433
No 169
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.68 E-value=1.1 Score=40.98 Aligned_cols=72 Identities=31% Similarity=0.320 Sum_probs=52.5
Q ss_pred HHHHHHHHcCceEEEEecc-C--CC--C-CCCHHHHHHHHhcCCCCCeeccccccCH-HHHHHHHHcCCcchHHHHhcCC
Q 018446 201 EIARSYEKGGAACLSILTD-E--KY--F-KGSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD-~--~f--F-~GS~edL~~VR~a~v~lPVLrKDFIIdp-yQI~eAr~~GADAVLLIaaiL~ 273 (355)
+.++...+.||+.|-+..- . .. + ...++.+..+++. +++||+. .+.|.. .++.++..+|||+|.+.-+++.
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-~~~Pvi~-~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-VDIPVIA-AGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-hCCCEEE-ECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 4566677789998765321 0 00 1 1246788888885 7899997 888876 8999999999999998877764
Q ss_pred H
Q 018446 274 D 274 (355)
Q Consensus 274 ~ 274 (355)
.
T Consensus 191 ~ 191 (236)
T cd04730 191 T 191 (236)
T ss_pred C
Confidence 3
No 170
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=87.63 E-value=5.2 Score=37.61 Aligned_cols=138 Identities=22% Similarity=0.185 Sum_probs=84.6
Q ss_pred CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
+...-||.++|+.|.+.||.-|-|.==.... |. ++.++.+.+. +.+|+.--==|=+.-++.+....|||.|.+-.
T Consensus 31 ~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~-~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 31 LCSTSDPLDVARAYKELGFRGLYIADLDAIM-GRGDNDEAIRELAAA-WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred cccCCCHHHHHHHHHHCCCCEEEEEeCcccc-CCCccHHHHHHHHHh-CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 3434599999999999999887764322222 44 4455555553 67897654444556889999999999998877
Q ss_pred hcCCHHHHHHHHHHHHHcCC-cEEEEeC-------------CHHHHHHHhccCCCe-EEEee-CCCCCccccChhhHHhh
Q 018446 270 AVLPDLDIRYMTKICKLLGL-TALVEVH-------------DEREMDRVLGIEGIE-LIGIN-NRNLETFEVDNSNTKKL 333 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGL-eaLVEVH-------------~~eELerAl~l~ga~-iIGIN-NRdL~TfevDl~~t~~L 333 (355)
..+.+ + -+.+.++.+|= ..+|-+. +..|+-+.+... +. ++-.+ +++-.-...|++...++
T Consensus 109 ~~~~~-~--~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i 184 (233)
T cd04723 109 ETLPS-D--DDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERL 184 (233)
T ss_pred eeccc-h--HHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHH
Confidence 77765 3 34566677664 3344333 245554444332 33 33222 23444455677777777
Q ss_pred hcc
Q 018446 334 LEG 336 (355)
Q Consensus 334 ~~~ 336 (355)
...
T Consensus 185 ~~~ 187 (233)
T cd04723 185 AAR 187 (233)
T ss_pred HHh
Confidence 654
No 171
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.60 E-value=12 Score=35.18 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCcchHHHHhcC----C--------HHHHHHHHHHHHHcCCcEEEEeC------CHHHHHHHhccCCCeEE
Q 018446 252 WQIYYARTKGADAVLLIAAVL----P--------DLDIRYMTKICKLLGLTALVEVH------DEREMDRVLGIEGIELI 313 (355)
Q Consensus 252 yQI~eAr~~GADAVLLIaaiL----~--------~~~L~~L~~~A~~LGLeaLVEVH------~~eELerAl~l~ga~iI 313 (355)
-.|..|+.+|+..|.+-..-. + .+.|+++.++|.+.|+...+|.| +.+++-+.++.-+.+-+
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~l 182 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWF 182 (283)
T ss_pred HHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCcc
Confidence 356778888888765421110 0 23678899999999999999998 55666665543233455
Q ss_pred Eee
Q 018446 314 GIN 316 (355)
Q Consensus 314 GIN 316 (355)
|++
T Consensus 183 gl~ 185 (283)
T PRK13209 183 QLY 185 (283)
T ss_pred ceE
Confidence 554
No 172
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=87.59 E-value=5.9 Score=37.47 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=73.5
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e 256 (355)
..+..|+|.... ....... -...+.+.+.+.|.. +...|.-++..+..+|+....+++... . ......
T Consensus 128 ~~l~iEiK~~~~-~~~~~~~-~~~~v~~~l~~~~~~------~~~v~~s~~~~~~~~~~~~p~~~~~~~---~-~~~~~~ 195 (252)
T cd08574 128 KSVIFDLRRPPP-NHPYYQS-YVNITLDTILASGIP------QHQVFWLPDEYRALVRKVAPGFQQVSG---R-KLPVES 195 (252)
T ss_pred CeEEEEecCCcc-cCccHHH-HHHHHHHHHHHcCCC------cccEEEccHHHHHHHHHHCCCCeEeec---c-ccchHH
Confidence 469999985321 1000001 113466666666642 111122244557788875456665531 1 112223
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEE
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iI 313 (355)
....||+++-.-...+++ .+++.+++.|+.+.+= |.+.+++++.+++ |++-|
T Consensus 196 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~WTVn~~~~~~~l~~~-GVdgI 248 (252)
T cd08574 196 LRENGISRLNLEYSQLSA----QEIREYSKANISVNLYVVNEPWLYSLLWCS-GVQSV 248 (252)
T ss_pred HHhcCCeEEccCcccCCH----HHHHHHHHCCCEEEEEccCCHHHHHHHHHc-CCCEE
Confidence 345799987776666764 5899999999999885 7889999999987 87655
No 173
>PRK12677 xylose isomerase; Provisional
Probab=87.50 E-value=7.9 Score=39.47 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCC-CCCCH----HHHHHHH----hcCCCCCeeccccccC--------
Q 018446 188 PSRGILREDFDPVEIARSYEKGGAACLSILTDEKY-FKGSF----ENLEAVR----SAGVKCPLLCKEFIVD-------- 250 (355)
Q Consensus 188 PSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~f-F~GS~----edL~~VR----~a~v~lPVLrKDFIId-------- 250 (355)
|-.+-.++..|+++....+.+.|+.+|.+.-+.-+ |.-+. ..+..++ +.+..++.++-.+.-+
T Consensus 22 ~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~l 101 (384)
T PRK12677 22 PFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAF 101 (384)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcC
Confidence 44444567778888888888888888877543222 21111 1233332 3344445443322111
Q ss_pred ----H-----------HHHHHHHHcCCcchHHHHhcCCH----------------HHHHHHHHHHHHc--CCcEEEEeC-
Q 018446 251 ----A-----------WQIYYARTKGADAVLLIAAVLPD----------------LDIRYMTKICKLL--GLTALVEVH- 296 (355)
Q Consensus 251 ----p-----------yQI~eAr~~GADAVLLIaaiL~~----------------~~L~~L~~~A~~L--GLeaLVEVH- 296 (355)
+ --|..|+.+||+.|.+-....+. +-|..+.++|.+. |+..++|-+
T Consensus 102 ts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp 181 (384)
T PRK12677 102 TSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKP 181 (384)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCC
Confidence 1 23578999999998886554311 3455778889884 498898875
Q ss_pred ----------CHHHHHHHhccCC-CeEEEee
Q 018446 297 ----------DEREMDRVLGIEG-IELIGIN 316 (355)
Q Consensus 297 ----------~~eELerAl~l~g-a~iIGIN 316 (355)
|.+++...++.-| ...+|||
T Consensus 182 ~ep~~~~~l~t~~~al~li~~lg~~~~vGv~ 212 (384)
T PRK12677 182 NEPRGDILLPTVGHALAFIATLEHPEMVGLN 212 (384)
T ss_pred CCCCCCeeeCCHHHHHHHHHHhCCCccEEEe
Confidence 3444444443212 2367766
No 174
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=87.47 E-value=2.2 Score=40.56 Aligned_cols=76 Identities=20% Similarity=0.131 Sum_probs=58.3
Q ss_pred HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC-------HHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-------AWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId-------pyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
++.+.+.||+.|-+- |.|+.+.|+.+.+. ..+||+.= =.|. .-.+.++..+||+++-.+-+++..+
T Consensus 162 ~~~a~~~GADyikt~-----~~~~~~~l~~~~~~-~~iPVva~-GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 162 ARLGAELGADIVKTP-----YTGDIDSFRDVVKG-CPAPVVVA-GGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHHCCCEEecc-----CCCCHHHHHHHHHh-CCCcEEEe-cCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 567778999999852 67899999999874 78999773 2243 5567888899999999999999776
Q ss_pred HHHHHHHHHH
Q 018446 276 DIRYMTKICK 285 (355)
Q Consensus 276 ~L~~L~~~A~ 285 (355)
+....++..+
T Consensus 235 dp~~~~~~l~ 244 (258)
T TIGR01949 235 DPVGITKAVC 244 (258)
T ss_pred CHHHHHHHHH
Confidence 6555554433
No 175
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.46 E-value=2.8 Score=37.90 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=65.4
Q ss_pred HHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH-hcCCHHHHHHH
Q 018446 202 IARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-AVLPDLDIRYM 280 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa-aiL~~~~L~~L 280 (355)
-++.....||..|- ..|+..++...++. ..+|++- +.- ++-|+.+|..+|||.|.+-- ..++.+-++
T Consensus 68 ~~~~a~~~Ga~~i~-------~p~~~~~~~~~~~~-~~~~~i~-gv~-t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~-- 135 (190)
T cd00452 68 QADAAIAAGAQFIV-------SPGLDPEVVKAANR-AGIPLLP-GVA-TPTEIMQALELGADIVKLFPAEAVGPAYIK-- 135 (190)
T ss_pred HHHHHHHcCCCEEE-------cCCCCHHHHHHHHH-cCCcEEC-CcC-CHHHHHHHHHCCCCEEEEcCCcccCHHHHH--
Confidence 44566678999883 45666777777664 5667654 333 88999999999999998742 223332222
Q ss_pred HHHHHHcC-C--cEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 281 TKICKLLG-L--TALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 281 ~~~A~~LG-L--eaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
.++..+. + -+.=-+ |.+.+...+++ |+..|++-+
T Consensus 136 -~l~~~~~~~p~~a~GGI-~~~n~~~~~~~-G~~~v~v~s 172 (190)
T cd00452 136 -ALKGPFPQVRFMPTGGV-SLDNAAEWLAA-GVVAVGGGS 172 (190)
T ss_pred -HHHhhCCCCeEEEeCCC-CHHHHHHHHHC-CCEEEEEch
Confidence 2233332 3 222235 88999999987 899888754
No 176
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=87.44 E-value=1.6 Score=43.48 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccC--CCCCC--CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHc-CCcchHHHH
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDE--KYFKG--SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTK-GADAVLLIA 269 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~--~fF~G--S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~-GADAVLLIa 269 (355)
++...++|+..+++||++|.|--.. ..|.| +++.+..+++. ++ +||+-.-=|-++-+..+-... |+|+|.+==
T Consensus 151 ~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~-~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 151 DILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEA-VPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred cccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHh-CCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence 3457789999999999999997554 45566 89999999996 77 999999999999888888775 699999876
Q ss_pred hcCCHHH
Q 018446 270 AVLPDLD 276 (355)
Q Consensus 270 aiL~~~~ 276 (355)
+++..--
T Consensus 230 ga~~nP~ 236 (323)
T COG0042 230 GALGNPW 236 (323)
T ss_pred HHccCCc
Confidence 6666433
No 177
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=87.26 E-value=0.47 Score=48.92 Aligned_cols=72 Identities=24% Similarity=0.172 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCceEEEE-------eccCCCCCC---CHHHHHHHHhc--CCCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446 200 VEIARSYEKGGAACLSI-------LTDEKYFKG---SFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISV-------LTD~~fF~G---S~edL~~VR~a--~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL 267 (355)
.+-|+...++||++|-| +|.+...+. .+..+..++++ ..++||+.-==|-++-+|..|.++|||+|.+
T Consensus 276 ~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 276 AEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 35677777899999943 355444332 23444444332 2578999988899999999999999999976
Q ss_pred HHhc
Q 018446 268 IAAV 271 (355)
Q Consensus 268 Iaai 271 (355)
=-.+
T Consensus 356 G~~~ 359 (450)
T TIGR01302 356 GSLL 359 (450)
T ss_pred Cchh
Confidence 4433
No 178
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.26 E-value=5.9 Score=38.30 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHhcC-CHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAAVL-PDL 275 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaaiL-~~~ 275 (355)
+..++++..+..|...| |+.+-..+++.+..+|++ +++||..-+-+.+..++..... .++|.|.+=..-+ +-.
T Consensus 192 ~A~~~~~~l~~~~l~~i----EeP~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 192 EAVELLRELAELGVELI----EQPVPAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLT 266 (316)
T ss_pred HHHHHHHHHHhcCCCEE----ECCCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHH
Confidence 34566677777776555 666666789999999986 8999999999999999888766 5678877755555 466
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCHHHHHHH
Q 018446 276 DIRYMTKICKLLGLTALVEVHDEREMDRV 304 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLVEVH~~eELerA 304 (355)
+...+..+|+..|+.+.+-.|-+-.+-.+
T Consensus 267 ~~~~~~~~a~~~gi~~~~~~~~~~~i~~~ 295 (316)
T cd03319 267 EALRIADLARAAGLKVMVGCMVESSLSIA 295 (316)
T ss_pred HHHHHHHHHHHcCCCEEEECchhhHHHHH
Confidence 78889999999999999987766666553
No 179
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=87.10 E-value=13 Score=34.09 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=73.6
Q ss_pred CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CCHHHHHHHHhcCCCCCe--eccccccCHH
Q 018446 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAGVKCPL--LCKEFIVDAW 252 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~edL~~VR~a~v~lPV--LrKDFIIdpy 252 (355)
...++.|+|...... ..+ ...+++...+.|. .++-.|+ -+.+.|..+|+...++|+ |.......
T Consensus 102 ~~~l~leiK~~~~~~----~~~-~~~l~~~l~~~~~------~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-- 168 (230)
T cd08563 102 DLLLNIEIKTDVIHY----PGI-EKKVLELVKEYNL------EDRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD-- 168 (230)
T ss_pred CcEEEEEECCCCCcC----hhH-HHHHHHHHHHcCC------CCCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--
Confidence 457999999533211 111 1355666666552 2222222 466888888875444553 23332222
Q ss_pred HHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEE
Q 018446 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIG 314 (355)
Q Consensus 253 QI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIG 314 (355)
....++..+++++-.-...++ +.+++.+++.|+...+ -|++.+++++++.. |++-|-
T Consensus 169 ~~~~~~~~~~~~v~~~~~~~~----~~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~~-GVdgi~ 226 (230)
T cd08563 169 PKDYAKKIGADSLHPDFKLLT----EEVVEELKKRGIPVRLWTVNEEEDMKRLKDL-GVDGII 226 (230)
T ss_pred HHHHHHHhCCEEEccCchhcC----HHHHHHHHHCCCEEEEEecCCHHHHHHHHHC-CCCEEe
Confidence 234456677777654333344 4689999999999886 56889999999996 887664
No 180
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=87.10 E-value=1.3 Score=42.98 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~ 278 (355)
..++|+...+.|+.. +|+|+|+ =|. + | +.|| | ++.+.|+
T Consensus 31 ~~~~a~~~~~~g~~~--------~r~g~~k----pRt---s-~--------~sf~-------G----------~G~~gl~ 69 (250)
T PRK13397 31 IRLAASSAKKLGYNY--------FRGGAYK----PRT---S-A--------ASFQ-------G----------LGLQGIR 69 (250)
T ss_pred HHHHHHHHHHcCCCE--------EEecccC----CCC---C-C--------cccC-------C----------CCHHHHH
Confidence 457888888888866 7888888 221 1 1 2222 2 6667899
Q ss_pred HHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 279 YMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 279 ~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
.|.++|+++||..+.|||+.++++.+.+ .++++=|-.||...+..
T Consensus 70 ~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~~L 114 (250)
T PRK13397 70 YLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNFEF 114 (250)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCHHH
Confidence 9999999999999999999999999987 49999999999988553
No 181
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.07 E-value=4.9 Score=38.99 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446 227 FENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 227 ~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai 271 (355)
.+.+..+|+. +++||.. +|.|. +-|+.+...+|||+|..=-++
T Consensus 191 ~~~i~~ir~~-t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 191 KKLIETIKKM-TNKPIIL-GFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred HHHHHHHHHh-cCCCEEE-ECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 4556777885 8999998 99999 999999999999998874444
No 182
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=87.04 E-value=4.3 Score=41.28 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=84.8
Q ss_pred HHHHHHHHc--CceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH--------HHHh
Q 018446 201 EIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LIAA 270 (355)
Q Consensus 201 ~iA~~Ye~~--GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL--------LIaa 270 (355)
+.++...++ |++.|-|-+---|-.+-.++++.+|+. .+-+.+.+==|.++-+..++..+|||+|. -+.+
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~-~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR 188 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA-FPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR 188 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh-CCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCc
Confidence 445555555 599999988887777788999999985 55567778889999999999999999985 3333
Q ss_pred cCC---HHHHHHHH---HHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEee
Q 018446 271 VLP---DLDIRYMT---KICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 271 iL~---~~~L~~L~---~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGIN 316 (355)
.+. -.+|..+. +.|+.+|...+.- +++--|+-+||.+ ||+.+.+-
T Consensus 189 ~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~-GAd~VMlG 241 (343)
T TIGR01305 189 TKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGA-GADFVMLG 241 (343)
T ss_pred eeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHc-CCCEEEEC
Confidence 331 12455544 4555567766663 8899999999997 88877765
No 183
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=86.91 E-value=1.6 Score=43.24 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccC---CCCCC---------CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446 198 DPVEIARSYEKGGAACLSILTDE---KYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV 265 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF~G---------S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV 265 (355)
+..++++.++++||++|.|-.-. +.|.| .++.+.++++...++||+..==|.++-++.+... |||+|
T Consensus 142 ~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgV 220 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGV 220 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEE
Confidence 45688999999999999998864 35555 4677778887523899988877888888887774 99999
Q ss_pred HHHHhcCCH
Q 018446 266 LLIAAVLPD 274 (355)
Q Consensus 266 LLIaaiL~~ 274 (355)
.+==++|.+
T Consensus 221 MigRgal~n 229 (318)
T TIGR00742 221 MVGREAYEN 229 (318)
T ss_pred EECHHHHhC
Confidence 876666654
No 184
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=86.87 E-value=2.1 Score=41.65 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CH-HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446 198 DP-VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (355)
Q Consensus 198 Dp-~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~ 276 (355)
|| .++|+.|++.||.-|=|.== =.++.+-+..+.+. +++||.-===|- .-++.....+|||.|.+--+++.+..
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL---g~~n~~~i~~i~~~-~~~~v~vGGGIr-~e~v~~~l~aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML---GPNNDDAAKEALHA-YPGGLQVGGGIN-DTNAQEWLDEGASHVIVTSWLFTKGK 112 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC---CCCcHHHHHHHHHh-CCCCEEEeCCcC-HHHHHHHHHcCCCEEEECcHHHhCCC
Confidence 56 99999999999988876433 12256666677664 778886655454 48999999999999999887776421
Q ss_pred --HHHHHHHHHHcC
Q 018446 277 --IRYMTKICKLLG 288 (355)
Q Consensus 277 --L~~L~~~A~~LG 288 (355)
...+-+++..+|
T Consensus 113 i~~~~~~~i~~~fG 126 (253)
T TIGR02129 113 FDLKRLKEIVSLVG 126 (253)
T ss_pred CCHHHHHHHHHHhC
Confidence 334455666665
No 185
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=86.57 E-value=2.9 Score=39.58 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=45.1
Q ss_pred HHHHHHHHcCceEEEEeccCCCCCCC-------HHHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHH
Q 018446 201 EIARSYEKGGAACLSILTDEKYFKGS-------FENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~fF~GS-------~edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIa 269 (355)
+..+.+.+.....+=++|=...|+|. .+.++.+|+. .++||+. ||.|. +-|+.+...+ ||++..=-
T Consensus 143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v-ggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV-GFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE-EccCCCHHHHHHHHcc-CCEEEECH
Confidence 34444554334444444434445443 3677888885 7999999 99999 5599999999 99987633
No 186
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.42 E-value=2.2 Score=42.53 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHcCceEEEEe----ccCCCCCC--CHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 198 DPVEIARSYEKGGAACLSIL----TDEKYFKG--SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL----TD~~fF~G--S~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
|..++++.+++.|++.|+|- |...+..+ ..+++..++++ + ++||+.--=|-++-++.++...|||+|-+-=
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~-~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR 314 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKER-IAGRLPLIAVGSINTPDDALEALETGADLVAIGR 314 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhH
Confidence 45688999999999999983 33332222 35677778775 5 7999998888899999999999999999887
Q ss_pred hcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHH
Q 018446 270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELer 303 (355)
++|.+-++-. .+..=--+-+..+-..+.|++
T Consensus 315 ~liadPdl~~---k~~~G~~~~ir~ci~~~~~~~ 345 (353)
T cd04735 315 GLLVDPDWVE---KIKEGREDEINLEIDPDDLEE 345 (353)
T ss_pred HHHhCccHHH---HHHcCChhhhhhcCCHHHHHh
Confidence 7776645433 222211233555666666664
No 187
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.29 E-value=15 Score=34.86 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHH-cCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 197 FDPVEIARSYEK-GGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 197 ~Dp~~iA~~Ye~-~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
-||.++|+.|.+ .||.-|-|.==..-+.|. ++.++++++. +.+||--===|=+.-|+.....+|||.|.+-.+.+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 389999999999 799999886544445555 5566666664 78897665556677788889999999998877776
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCH-----------------HHH-HHHhccCCCeEEEeeCC--CCCccccChhhHHh
Q 018446 273 PDLDIRYMTKICKLLGLTALVEVHDE-----------------REM-DRVLGIEGIELIGINNR--NLETFEVDNSNTKK 332 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVEVH~~-----------------eEL-erAl~l~ga~iIGINNR--dL~TfevDl~~t~~ 332 (355)
.+. .-+-+.++.+|=..+|-+... .|+ ++...+ |+.=|=+++- |=..--.|++...+
T Consensus 110 ~~~--~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~ 186 (234)
T PRK13587 110 QDT--DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQ 186 (234)
T ss_pred cCH--HHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHH
Confidence 542 234455566553333333221 222 232333 5444444443 33344566776677
Q ss_pred hhcc
Q 018446 333 LLEG 336 (355)
Q Consensus 333 L~~~ 336 (355)
+...
T Consensus 187 l~~~ 190 (234)
T PRK13587 187 LVKA 190 (234)
T ss_pred HHHh
Confidence 7553
No 188
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.19 E-value=1.9 Score=39.32 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CH
Q 018446 223 FKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DE 298 (355)
Q Consensus 223 F~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~ 298 (355)
|+|=-+-+..+|+.....+ |...-- +.-|+.+|..+|||.|+| .=+++++++..++..+.++-.+.+|+. |+
T Consensus 63 ~g~i~~av~~~~~~~~~~~~I~VEv~--~~ee~~ea~~~g~d~I~l--D~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~ 138 (169)
T PF01729_consen 63 FGGIEEAVKAARQAAPEKKKIEVEVE--NLEEAEEALEAGADIIML--DNMSPEDLKEAVEELRELNPRVKIEASGGITL 138 (169)
T ss_dssp HSSHHHHHHHHHHHSTTTSEEEEEES--SHHHHHHHHHTT-SEEEE--ES-CHHHHHHHHHHHHHHTTTSEEEEESSSST
T ss_pred hCCHHHHHHHHHHhCCCCceEEEEcC--CHHHHHHHHHhCCCEEEe--cCcCHHHHHHHHHHHhhcCCcEEEEEECCCCH
Confidence 5444566677777533444 444333 356999999999999887 344778999999999999999999994 56
Q ss_pred HHHHHHhccCCCeEEEee
Q 018446 299 REMDRVLGIEGIELIGIN 316 (355)
Q Consensus 299 eELerAl~l~ga~iIGIN 316 (355)
+.+..-... |+++|++-
T Consensus 139 ~ni~~ya~~-gvD~isvg 155 (169)
T PF01729_consen 139 ENIAEYAKT-GVDVISVG 155 (169)
T ss_dssp TTHHHHHHT-T-SEEEEC
T ss_pred HHHHHHHhc-CCCEEEcC
Confidence 666666665 89998874
No 189
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.17 E-value=5.2 Score=38.68 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCceEEEEecc----------------CCCCCCCH--------HHHHHHHhcCC--CCCeecc---c----
Q 018446 200 VEIARSYEKGGAACLSILTD----------------EKYFKGSF--------ENLEAVRSAGV--KCPLLCK---E---- 246 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD----------------~~fF~GS~--------edL~~VR~a~v--~lPVLrK---D---- 246 (355)
.+-|+...++|+++|=+..- ..-|+||+ +-+..||++ + ++||..| +
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~-~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA-VGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-cCCCceEEEEechhccCC
Confidence 34455666789999866432 23478997 566777875 4 6777654 1
Q ss_pred cccCHHH----HHHHHHcCCcchHHHHhcCC-------------HHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhcc
Q 018446 247 FIVDAWQ----IYYARTKGADAVLLIAAVLP-------------DLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGI 307 (355)
Q Consensus 247 FIIdpyQ----I~eAr~~GADAVLLIaaiL~-------------~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l 307 (355)
...++.+ +.....+|+|.|-+...... ...+..+..+.+.+++..++ -+++.+++++++..
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~ 302 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAE 302 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHC
Confidence 1122222 23345568887754333221 22333333444445554444 35778888888875
Q ss_pred CCCeEEEee
Q 018446 308 EGIELIGIN 316 (355)
Q Consensus 308 ~ga~iIGIN 316 (355)
.++++|++-
T Consensus 303 g~aD~V~ig 311 (327)
T cd02803 303 GKADLVALG 311 (327)
T ss_pred CCCCeeeec
Confidence 468888874
No 190
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=86.07 E-value=19 Score=32.78 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=80.8
Q ss_pred ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC
Q 018446 161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240 (355)
Q Consensus 161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l 240 (355)
..|.+.|..... .+..+..|+|...+. ...+ ...+++.+.+.|...--+ +...+.+.|..+|+....+
T Consensus 83 ptL~evl~~~~~--~~~~l~iEiK~~~~~----~~~~-~~~v~~~l~~~~~~~~v~-----v~Sf~~~~l~~~~~~~p~~ 150 (220)
T cd08579 83 PSLDEYLALAKG--LKQKLLIELKPHGHD----SPDL-VEKFVKLYKQNLIENQHQ-----VHSLDYRVIEKVKKLDPKI 150 (220)
T ss_pred CCHHHHHHHhhc--cCCeEEEEECCCCCC----CHHH-HHHHHHHHHHcCCCcCeE-----EEeCCHHHHHHHHHHCCCC
Confidence 345555544321 145799999965321 1111 235667777776432111 2234788889998753445
Q ss_pred Ce--eccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEee
Q 018446 241 PL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 241 PV--LrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGIN 316 (355)
|+ +... ++......|+|.+-+-...++. ++++.++..|+.+.+ -|++.+++.+++.. |++.|--|
T Consensus 151 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~G~~v~~wtvn~~~~~~~~~~~-Gvd~i~TD 218 (220)
T cd08579 151 KTGYILPF------NIGNLPKTNVDFYSIEYSTLNK----EFIRQAHQNGKKVYVWTVNDPDDMQRYLAM-GVDGIITD 218 (220)
T ss_pred eEEEEEec------ccCcccccCceEEeeehhhcCH----HHHHHHHHCCCEEEEEcCCCHHHHHHHHHc-CCCEEeCC
Confidence 43 3322 2222345677777655555553 678999999999876 57789999999987 88877543
No 191
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=85.95 E-value=2.7 Score=40.72 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=97.7
Q ss_pred eecCCCCCCCCCCCCHHHHHHHH---HHcCceEEEEeccCCCCCCC-----HHHHHHHHhcC-------CCCCeecccc-
Q 018446 184 KKASPSRGILREDFDPVEIARSY---EKGGAACLSILTDEKYFKGS-----FENLEAVRSAG-------VKCPLLCKEF- 247 (355)
Q Consensus 184 KRaSPSkG~I~~~~Dp~~iA~~Y---e~~GAaaISVLTD~~fF~GS-----~edL~~VR~a~-------v~lPVLrKDF- 247 (355)
+.-|-+-|.+.. +|..++.+- ...|++-+=| -+|+++ .+.|..+.++. .=++++.-|+
T Consensus 53 ~pvSAtiGDlp~--~p~~~~~aa~~~a~~GvdyvKv----Gl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~ 126 (235)
T PF04476_consen 53 KPVSATIGDLPM--KPGTASLAALGAAATGVDYVKV----GLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ 126 (235)
T ss_pred CceEEEecCCCC--CchHHHHHHHHHHhcCCCEEEE----ecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh
Confidence 334555566643 454444322 2346555544 245433 35555543220 1258999999
Q ss_pred ---ccCHHHHH-HHHHcCCcchHHHH---------hcCCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhccCCCeEE
Q 018446 248 ---IVDAWQIY-YARTKGADAVLLIA---------AVLPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 248 ---IIdpyQI~-eAr~~GADAVLLIa---------aiL~~~~L~~L~~~A~~LGLea-LVEVH~~eELerAl~l~ga~iI 313 (355)
-++|+.|- .++.+|+|+++|=. ..|+.++|.+|++.|+++||.+ |---=..+++.+...+ +++++
T Consensus 127 r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l-~pD~l 205 (235)
T PF04476_consen 127 RVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRL-GPDIL 205 (235)
T ss_pred hhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhc-CCCEE
Confidence 57899875 45788999998844 4589999999999999999864 4455577888888888 89999
Q ss_pred Eee-----CCCCCccccChhhHHhhhc
Q 018446 314 GIN-----NRNLETFEVDNSNTKKLLE 335 (355)
Q Consensus 314 GIN-----NRdL~TfevDl~~t~~L~~ 335 (355)
|+- +.|..+=.+|.+...+|..
T Consensus 206 GfRGAvC~ggdR~~G~id~~~V~~lr~ 232 (235)
T PF04476_consen 206 GFRGAVCGGGDRRAGRIDPELVAALRA 232 (235)
T ss_pred EechhhCCCCCcCccccCHHHHHHHHH
Confidence 985 3455566788887777754
No 192
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=85.90 E-value=0.57 Score=46.28 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
|+.+-|+.|.+.++..||-.+.||-|.++++.+.+- +++|-|-.||.++|++
T Consensus 93 lge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y--~DilqvGARNMQNF~L 144 (286)
T COG2876 93 LGEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY--ADILQVGARNMQNFAL 144 (286)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh--hhHHHhcccchhhhHH
Confidence 556789999999999999999999999999999874 8999999999999975
No 193
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=85.89 E-value=5.1 Score=42.04 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHH-----HHcC----ceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSY-----EKGG----AACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK 245 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y-----e~~G----AaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK 245 (355)
+.+.|.+|| ++.. ++-.+.+.++.| +..| |+.|.|-..+..=..=..-++.++++ +++|| .=
T Consensus 90 np~~Ia~eI---~D~l----~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~-~dvPL-SI 160 (450)
T PRK04165 90 NPTGIAVDV---SDTM----DDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAET-TDLPL-IL 160 (450)
T ss_pred CCCEEEEEE---eCCC----ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHh-cCCCE-EE
Confidence 467899999 4432 223456666777 6667 99999987665111112233444443 68885 33
Q ss_pred ccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhc
Q 018446 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306 (355)
Q Consensus 246 DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~ 306 (355)
|- .|+--+.+|..+|||.+-||.++- .+.++.+.+.|.+.|..+++.-.+.+.+++...
T Consensus 161 DT-~dpevleaAleagad~~plI~Sat-~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~ 219 (450)
T PRK04165 161 CS-EDPAVLKAALEVVADRKPLLYAAT-KENYEEMAELAKEYNCPLVVKAPNLEELKELVE 219 (450)
T ss_pred eC-CCHHHHHHHHHhcCCCCceEEecC-cchHHHHHHHHHHcCCcEEEEchhHHHHHHHHH
Confidence 32 688889999999999999998855 458999999999999988885544455555443
No 194
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.88 E-value=0.55 Score=44.34 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=57.9
Q ss_pred HHHHcCCcchHHHHhc---------CCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhccCCCeEEEeeCC-----CC
Q 018446 256 YARTKGADAVLLIAAV---------LPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIGINNR-----NL 320 (355)
Q Consensus 256 eAr~~GADAVLLIaai---------L~~~~L~~L~~~A~~LGLea-LVEVH~~eELerAl~l~ga~iIGINNR-----dL 320 (355)
-|+.+|||-+.+=.++ ++.++|++|.+.|++.||++ |----..+++...-++ |++||||-+- |.
T Consensus 139 vaa~ag~DvaMvDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~ei-g~DivGvRgaaC~~GDR 217 (235)
T COG1891 139 VAAEAGADVAMVDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEI-GPDIVGVRGAACEGGDR 217 (235)
T ss_pred HHHhcCCCEEEEecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHh-CCCeeeecchhccCCCc
Confidence 3778999998875554 78899999999999999985 4444566777777777 9999999753 44
Q ss_pred CccccChhhHHhhhc
Q 018446 321 ETFEVDNSNTKKLLE 335 (355)
Q Consensus 321 ~TfevDl~~t~~L~~ 335 (355)
.|-.++-+...+|.+
T Consensus 218 n~g~I~relV~kL~e 232 (235)
T COG1891 218 NTGAIRRELVRKLKE 232 (235)
T ss_pred ccchHHHHHHHHHHH
Confidence 454555555555543
No 195
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=85.86 E-value=1.8 Score=44.10 Aligned_cols=68 Identities=26% Similarity=0.317 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCceEE--EEeccCCCCCCC--HHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 200 VEIARSYEKGGAACL--SILTDEKYFKGS--FENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaI--SVLTD~~fF~GS--~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
.+.|+...+.|+++| |.---..++.|- ++.|..++++ + ++||+..==|-.+--|..|.++|||+|.+=
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a-v~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA-VDKRVPIVFDSGVRRGQHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH-hCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEc
Confidence 457777778999977 766666665554 6889999875 4 599999999999999999999999998763
No 196
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=85.60 E-value=23 Score=30.61 Aligned_cols=135 Identities=23% Similarity=0.231 Sum_probs=83.5
Q ss_pred cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC
Q 018446 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (355)
Q Consensus 162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP 241 (355)
.|.+.|.... +...+..|+|-.++..+ ....+.+.+.+.|+..=.++ ...+.+.+..+|+...++|
T Consensus 50 tL~e~l~~~~---~~~~i~leiK~~~~~~~------~~~~l~~~i~~~~~~~~v~i-----~s~~~~~l~~~~~~~p~~~ 115 (189)
T cd08556 50 TLEEVLELVK---GGVGLNIELKEPTRYPG------LEAKVAELLREYGLEERVVV-----SSFDHEALRALKELDPEVP 115 (189)
T ss_pred CHHHHHHhcc---cCcEEEEEECCCCCchh------HHHHHHHHHHHcCCcCCEEE-----EeCCHHHHHHHHHhCCCCc
Confidence 4555554432 24579999998665221 23356666666662222221 2245788888887544555
Q ss_pred e--eccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEEe
Q 018446 242 L--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 242 V--LrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIGI 315 (355)
+ +..+..-..-+....+..|+|.+-+-...+++ .+++.+++.|+...+= |++.++++.++.. |++.|--
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~-GVdgI~T 187 (189)
T cd08556 116 TGLLVDKPPLDPLLAELARALGADAVNPHYKLLTP----ELVRAAHAAGLKVYVWTVNDPEDARRLLAL-GVDGIIT 187 (189)
T ss_pred EEEEeecCcccchhhhHHHhcCCeEEccChhhCCH----HHHHHHHHcCCEEEEEcCCCHHHHHHHHHC-CCCEEec
Confidence 3 22222221111135678899988776666654 6789999999999875 5679999999886 8876643
No 197
>PRK15452 putative protease; Provisional
Probab=85.58 E-value=2.3 Score=44.24 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=45.7
Q ss_pred CHHHHHHHHHcCCcchHHH---------HhcCCHHHHHHHHHHHHHcCCcEEEE----eCCHHHH-------HHHhccCC
Q 018446 250 DAWQIYYARTKGADAVLLI---------AAVLPDLDIRYMTKICKLLGLTALVE----VHDEREM-------DRVLGIEG 309 (355)
Q Consensus 250 dpyQI~eAr~~GADAVLLI---------aaiL~~~~L~~L~~~A~~LGLeaLVE----VH~~eEL-------erAl~l~g 309 (355)
+.-|+..|..+|||||.+= +.-++.++|++.+++|+..|..+.|- +|+ +|+ +.+..+ |
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e-~el~~~~~~l~~l~~~-g 89 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN-AKLKTFIRDLEPVIAM-K 89 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH-HHHHHHHHHHHHHHhC-C
Confidence 4567788888999999882 23466788999999999999888887 443 343 443443 5
Q ss_pred CeEEEeeC
Q 018446 310 IELIGINN 317 (355)
Q Consensus 310 a~iIGINN 317 (355)
++-|-|.|
T Consensus 90 vDgvIV~d 97 (443)
T PRK15452 90 PDALIMSD 97 (443)
T ss_pred CCEEEEcC
Confidence 56555554
No 198
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.40 E-value=2.8 Score=40.55 Aligned_cols=79 Identities=28% Similarity=0.264 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHcCceEEEEeccC---CCC---------CCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcc
Q 018446 198 DPVEIARSYEKGGAACLSILTDE---KYF---------KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADA 264 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~---~fF---------~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADA 264 (355)
+..++++.+++.|++.|.|-.-. .++ .-.++.+..+|+. +++||+.--=|-++.++.++... |||.
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD~ 307 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKADL 307 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCCe
Confidence 45678999999999999875321 111 2235777889886 89999999999999999999998 7999
Q ss_pred hHHHHhcCCHHHH
Q 018446 265 VLLIAAVLPDLDI 277 (355)
Q Consensus 265 VLLIaaiL~~~~L 277 (355)
|-+--.+|.+.++
T Consensus 308 V~igR~~ladP~l 320 (327)
T cd02803 308 VALGRALLADPDL 320 (327)
T ss_pred eeecHHHHhCccH
Confidence 9887777765444
No 199
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=85.30 E-value=3.8 Score=36.93 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCceEEEEecc---CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 198 DPVEIARSYEKGGAACLSILTD---EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD---~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
++.+.++.+.+.|++.++|-+. ..|-...++.+..+++. ...|.+.=|=.|.+--+.+...+|||+|.+--++...
T Consensus 114 t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~-~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 114 DKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKL-VKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred ChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHh-cCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 3555666666779999988532 22223467788888874 5555566567788888999999999999988888865
Q ss_pred HHHHHHHHH
Q 018446 275 LDIRYMTKI 283 (355)
Q Consensus 275 ~~L~~L~~~ 283 (355)
++.++.++.
T Consensus 193 ~d~~~~~~~ 201 (206)
T TIGR03128 193 ADPAEAARQ 201 (206)
T ss_pred CCHHHHHHH
Confidence 555555443
No 200
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.26 E-value=1.7 Score=42.76 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=47.0
Q ss_pred CC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 272 LP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 272 L~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
|+ .+-|+.|-+..+++||-++.|||+.++++.+.+. ++++=|-.||-..|++
T Consensus 64 ~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~--~DilQIgArn~rn~~L 116 (264)
T PRK05198 64 PGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV--VDVLQIPAFLCRQTDL 116 (264)
T ss_pred CChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh--CcEEEECchhcchHHH
Confidence 66 5679999999999999999999999999999884 8999999999988743
No 201
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=84.93 E-value=5.6 Score=38.20 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC-CeeccccccCHHHHHHHHHcCCcchHHHH------
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIA------ 269 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l-PVLrKDFIIdpyQI~eAr~~GADAVLLIa------ 269 (355)
.+|..+...|.++||+.|||-.| -..--.+-|+.+|+.++.. =+|+.+ .|...++-..--.|.||++.
T Consensus 71 ~~p~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~---Tp~~~i~~~l~~vD~VllMsVnPGfg 145 (220)
T COG0036 71 ENPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPA---TPLEALEPVLDDVDLVLLMSVNPGFG 145 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHhhCCEEEEEeECCCCc
Confidence 37899999999999999999999 4445577888888865432 145554 45555666666789988754
Q ss_pred ------hcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEe
Q 018446 270 ------AVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 270 ------aiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGI 315 (355)
++| +.++++.++..+-| +.++||. |.+-+..+..+ ||+++-.
T Consensus 146 GQ~Fi~~~l--~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~A-Gad~~Va 196 (220)
T COG0036 146 GQKFIPEVL--EKIRELRAMIDERL-DILIEVDGGINLETIKQLAAA-GADVFVA 196 (220)
T ss_pred ccccCHHHH--HHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHc-CCCEEEE
Confidence 333 25666666666666 9999997 66777777765 8887754
No 202
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=84.87 E-value=1.9 Score=43.42 Aligned_cols=50 Identities=22% Similarity=0.504 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
.+.|+.|.++|+++||..+.|+||.++++.+.+. ++++-|-.||...|..
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~--vd~lqIgAr~~~N~~L 192 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY--VDILQIGARNMQNFDL 192 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--CCeEEECcccccCHHH
Confidence 6789999999999999999999999999999875 8999999999988753
No 203
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=84.81 E-value=0.99 Score=45.89 Aligned_cols=92 Identities=22% Similarity=0.137 Sum_probs=61.2
Q ss_pred EEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEecc----CCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD----EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 179 VIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD----~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
-|.++++..|-.=++..-.++. -|+...+.||++|-|--= -..-...++-|..++++ +++||+..==|-.+..|
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~e-da~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~-~~~~vi~dGGIr~g~Dv 304 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAE-DAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAA-TYKPVLIDSGIRRGSDI 304 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHH-HHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHH-hCCeEEEeCCCCCHHHH
Confidence 4555555555332233334555 455555679999976320 00111236678888886 78999999999999999
Q ss_pred HHHHHcCCcchHHHHhcC
Q 018446 255 YYARTKGADAVLLIAAVL 272 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL 272 (355)
..|.++|||+|.+=-.+|
T Consensus 305 ~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 305 VKALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHcCCCEEEECHHHH
Confidence 999999999998744433
No 204
>PLN02535 glycolate oxidase
Probab=84.75 E-value=1.7 Score=44.24 Aligned_cols=74 Identities=24% Similarity=0.262 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCceEEEEec----cCCCCCCCHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILT----DEKYFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT----D~~fF~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
++.+ |+...+.|+++|.|-- ...+...+++-|..++++ ..++||+.-==|-.+..|..|.++|||+|.+=-.+|
T Consensus 233 ~~~d-A~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l 311 (364)
T PLN02535 233 TRED-AIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI 311 (364)
T ss_pred CHHH-HHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 4443 6666778999997731 112333346888888765 126999999999999999999999999998744444
No 205
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=84.50 E-value=1.8 Score=42.35 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=46.9
Q ss_pred CC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 272 LP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 272 L~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
++ ++-|+.|-+..+++||-++.|||+.++++.+.+. +++|=|--||-.+|++
T Consensus 56 ~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~--vDilQIgArn~rn~~L 108 (258)
T TIGR01362 56 PGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV--VDIIQIPAFLCRQTDL 108 (258)
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh--CcEEEeCchhcchHHH
Confidence 66 5679999999999999999999999999999874 8999999999988743
No 206
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.47 E-value=4.3 Score=39.99 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=80.0
Q ss_pred CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHH-HhcCCCCCeecc---------cc--ccCHHHHHHHHHc
Q 018446 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV-RSAGVKCPLLCK---------EF--IVDAWQIYYARTK 260 (355)
Q Consensus 193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~V-R~a~v~lPVLrK---------DF--IIdpyQI~eAr~~ 260 (355)
+...+||+.+...-.++|++|+.. .+--++.+ +..+-++|+|-| |- -.--+++.+|..+
T Consensus 39 ~~gl~d~e~~v~~v~~~g~dav~~---------~~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~l 109 (265)
T COG1830 39 IEGLEDPENIVAKVAEAGADAVAM---------TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRL 109 (265)
T ss_pred cccccCHHHHHHHHHhcCCCEEEe---------cHhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhC
Confidence 334679999999999999999763 22233322 112224554322 22 0112467889999
Q ss_pred CCcchHHHHhcCCH------HHHHHHHHHHHHcCCcEEEEe------------CCHHHHH----HHhccCCCeEEEeeCC
Q 018446 261 GADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV------------HDEREMD----RVLGIEGIELIGINNR 318 (355)
Q Consensus 261 GADAVLLIaaiL~~------~~L~~L~~~A~~LGLeaLVEV------------H~~eELe----rAl~l~ga~iIGINNR 318 (355)
|||||=.-+-+=+. +++.+..+.|+++||-.+.++ ++.+..- .+.++ ||+||=+|=
T Consensus 110 gadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael-GADIiK~~y- 187 (265)
T COG1830 110 GADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL-GADIIKTKY- 187 (265)
T ss_pred CCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh-cCCeEeecC-
Confidence 99998765544433 245566788999999999853 4555555 34555 999997762
Q ss_pred CCCccccChhhHHhhhcc
Q 018446 319 NLETFEVDNSNTKKLLEG 336 (355)
Q Consensus 319 dL~TfevDl~~t~~L~~~ 336 (355)
.-|.+..+++...
T Consensus 188 -----tg~~e~F~~vv~~ 200 (265)
T COG1830 188 -----TGDPESFRRVVAA 200 (265)
T ss_pred -----CCChHHHHHHHHh
Confidence 3344666666655
No 207
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=84.45 E-value=5.7 Score=35.38 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=68.4
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc-cCHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI-VDAWQIYY 256 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI-IdpyQI~e 256 (355)
.++.|+--..+. ..........+.+.+.|.. +.-| -|+++...+..+... | -|+| +|.-.+..
T Consensus 118 ~lvlei~e~~~~----~~~~~~~~~i~~l~~~G~~---iald--dfg~~~~~~~~l~~l----~---~d~iKld~~~~~~ 181 (241)
T smart00052 118 RLELEITESVLL----DDDESAVATLQRLRELGVR---IALD--DFGTGYSSLSYLKRL----P---VDLLKIDKSFVRD 181 (241)
T ss_pred HEEEEEeChhhh----cChHHHHHHHHHHHHCCCE---EEEe--CCCCcHHHHHHHHhC----C---CCeEEECHHHHhh
Confidence 599999664332 1111122556777777744 3333 288888888877652 2 3444 45544433
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeE
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIEL 312 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~i 312 (355)
...... ...-++.+..+|+.+|+.+++| |.|.++++.+..+ |++.
T Consensus 182 ~~~~~~----------~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~-Gi~~ 227 (241)
T smart00052 182 LQTDPE----------DEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSL-GCDY 227 (241)
T ss_pred hccChh----------HHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHc-CCCE
Confidence 221111 1235678899999999999988 9999999999987 7764
No 208
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=84.36 E-value=4.4 Score=39.67 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 197 FDPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
-||.++|+.|++.||..|=|.= |. -...+++-+.++++ +++||=-===| -.-|+.....+|||-|.+-.+++.+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg-g~~~n~~~i~~i~~--~~~~vqvGGGI-R~e~i~~~l~~Ga~rViigT~Av~~~ 118 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA-DDASLAAALEALRA--YPGGLQVGGGV-NSENAMSYLDAGASHVIVTSYVFRDG 118 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC-CCcccHHHHHHHHh--CCCCEEEeCCc-cHHHHHHHHHcCCCEEEEchHHHhCC
Confidence 4899999999999999887643 33 33344555566654 45665322222 24889999999999999977777530
Q ss_pred --HHHHHHHHHHHcC-------CcEE-------EEeC--------CHHH-HHHHhccCCCeEEEeeCCCCC--ccccChh
Q 018446 276 --DIRYMTKICKLLG-------LTAL-------VEVH--------DERE-MDRVLGIEGIELIGINNRNLE--TFEVDNS 328 (355)
Q Consensus 276 --~L~~L~~~A~~LG-------LeaL-------VEVH--------~~eE-LerAl~l~ga~iIGINNRdL~--TfevDl~ 328 (355)
+..-+-+.++.+| +++- |-+| +..| +.+..+. ++.=|-+++=+-+ -.-.|++
T Consensus 119 ~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~-g~~eii~TdI~rDGtl~G~d~e 197 (262)
T PLN02446 119 QIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAA-YCDEFLVHGVDVEGKRLGIDEE 197 (262)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHh-CCCEEEEEEEcCCCcccCCCHH
Confidence 0233445566665 3332 2222 2344 3666664 6766666654444 3567788
Q ss_pred hHHhhhcccccc
Q 018446 329 NTKKLLEGERGE 340 (355)
Q Consensus 329 ~t~~L~~~~~~~ 340 (355)
.+.+|.....-+
T Consensus 198 l~~~l~~~~~ip 209 (262)
T PLN02446 198 LVALLGEHSPIP 209 (262)
T ss_pred HHHHHHhhCCCC
Confidence 888887653333
No 209
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=84.22 E-value=4.8 Score=38.98 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc--CCHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV--LPDLDI 277 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai--L~~~~L 277 (355)
.+....|.++|... |++|.+-.....+.. ++.| +.+++.+|-|+|=+-... |+.++.
T Consensus 44 ~eki~la~~~~V~v--------~~GGtl~E~~~~q~~------------~~~Y-l~~~k~lGf~~IEiS~G~~~i~~~~~ 102 (237)
T TIGR03849 44 KEKIEMYKDYGIKV--------YPGGTLFEIAHSKGK------------FDEY-LNECDELGFEAVEISDGSMEISLEER 102 (237)
T ss_pred HHHHHHHHHcCCeE--------eCCccHHHHHHHhhh------------HHHH-HHHHHHcCCCEEEEcCCccCCCHHHH
Confidence 35556778888776 888877766555432 2333 568999999998876665 578899
Q ss_pred HHHHHHHHHcCCcEEEEeCCHH--------------HHHHHhccCCCeEEEeeCCCCC
Q 018446 278 RYMTKICKLLGLTALVEVHDER--------------EMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 278 ~~L~~~A~~LGLeaLVEVH~~e--------------ELerAl~l~ga~iIGINNRdL~ 321 (355)
.++++.+++.||.++.||.-.. .+++.|++ ||..|.|..|.--
T Consensus 103 ~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeA-GA~~ViiEarEsg 159 (237)
T TIGR03849 103 CNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEA-GADYVIIEGRESG 159 (237)
T ss_pred HHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHC-CCcEEEEeehhcC
Confidence 9999999999999999986321 23445886 9999999998653
No 210
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.02 E-value=3.6 Score=39.81 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHc---CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 281 TKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 281 ~~~A~~L---GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL 320 (355)
++.+++. ++-.-|||||.+|+..|+.. |+++|++-|-..
T Consensus 171 v~~~r~~~~~~~~I~vev~t~eea~~A~~~-gaD~I~ld~~~~ 212 (269)
T cd01568 171 VKRARAAAPFEKKIEVEVETLEEAEEALEA-GADIIMLDNMSP 212 (269)
T ss_pred HHHHHHhCCCCCeEEEecCCHHHHHHHHHc-CCCEEEECCCCH
Confidence 4555554 46788999999999999986 999999988544
No 211
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=83.86 E-value=2.4 Score=42.19 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHhcCCCCCee--ccccccCHHHHHHHHHcCCcchHHHHhcCCHH----HHHHHHHHHHHcCCcEEEEeC
Q 018446 223 FKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVEVH 296 (355)
Q Consensus 223 F~GS~edL~~VR~a~v~lPVL--rKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~----~L~~L~~~A~~LGLeaLVEVH 296 (355)
.+-+++.|..+++. .++||+ +-==|-+|-++.++..+|||+|.+.-+++... ..+.|.+....+ .
T Consensus 188 ~~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~--------~ 258 (293)
T PRK04180 188 LQAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY--------D 258 (293)
T ss_pred cCCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc--------C
Confidence 45689999999985 789997 55545599999999999999999999997322 234444443333 4
Q ss_pred CHHHHHHHh-ccCCCeEEEeeCCCCCc
Q 018446 297 DEREMDRVL-GIEGIELIGINNRNLET 322 (355)
Q Consensus 297 ~~eELerAl-~l~ga~iIGINNRdL~T 322 (355)
|.+-|-.+- .+ |-.+.|||.+.|..
T Consensus 259 ~~~~~~~~s~~~-~~~m~g~~~~~~~~ 284 (293)
T PRK04180 259 DPEVLAEVSKGL-GEAMVGIDIDELPP 284 (293)
T ss_pred CHHHHHHHHccc-ccccCCCccccCCH
Confidence 555554443 33 66799999988743
No 212
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=83.65 E-value=3.7 Score=37.55 Aligned_cols=76 Identities=21% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHcCceEEEEe-ccCCCCCCCHHHHHHHHhcC-CCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446 203 ARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAG-VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (355)
Q Consensus 203 A~~Ye~~GAaaISVL-TD~~fF~GS~edL~~VR~a~-v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~ 278 (355)
++...+.|++.+.+- +|...|.=+++.+..+++.. .++|++.-==|-++-++.+...+|||+|++--+++...+..
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~ 211 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPG 211 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHH
Confidence 455566799999765 12234556678888887741 35788766555577999999999999999999988765543
No 213
>PLN02591 tryptophan synthase
Probab=83.60 E-value=1.9 Score=41.58 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhc
Q 018446 228 ENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 228 edL~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaai 271 (355)
+.+..+|+. +++||++ -|.|. +-|+.+...+|||+|+.=-++
T Consensus 179 ~~i~~vk~~-~~~Pv~v-GFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 179 SLLQELKEV-TDKPVAV-GFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred HHHHHHHhc-CCCceEE-eCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 448889986 8999999 99999 999999999999998875444
No 214
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=83.58 E-value=2.1 Score=43.32 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
++.+.++.|.++|+++||..+.|||+.++++.+.+. ++++-|-.+++..+.
T Consensus 166 ~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~--vd~lkI~s~~~~n~~ 216 (360)
T PRK12595 166 LGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY--VDVIQIGARNMQNFE 216 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh--CCeEEECcccccCHH
Confidence 446789999999999999999999999999999886 899999999998863
No 215
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.43 E-value=4.5 Score=38.29 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=74.6
Q ss_pred ccHHHHHHhhhhcCCCceEEeEeeecCC-CCCCC-CCCCCHHHHHHHHHHcCceEEE---EeccCCCCCCCHHHHHHHHh
Q 018446 161 RDFIGALMAANQRTGLPALIAEVKKASP-SRGIL-REDFDPVEIARSYEKGGAACLS---ILTDEKYFKGSFENLEAVRS 235 (355)
Q Consensus 161 rdF~~aL~~~~~~~g~~aVIAEvKRaSP-SkG~I-~~~~Dp~~iA~~Ye~~GAaaIS---VLTD~~fF~GS~edL~~VR~ 235 (355)
.+|...+.+.. ..++.+=.++|.--+ ..|+. ....++.++++.|.+.|+..+= |-.|...-+=+++.+..+++
T Consensus 112 ~~~l~~~~~~f--g~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~ 189 (234)
T PRK13587 112 TDWLKEMAHTF--PGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK 189 (234)
T ss_pred HHHHHHHHHHc--CCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH
Confidence 34555554433 134444445543211 23433 2467899999999999988653 33344444446888899988
Q ss_pred cCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 236 a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
. +++||..--=|-++-.+.++...|+|+|++=-++..
T Consensus 190 ~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 190 A-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred h-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 5 899999998888999999999999999987555543
No 216
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=83.24 E-value=2 Score=42.86 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHcC--ceEEEEeccCCCCCC-----CH----HHHHHHHhcCCC-------CCeecc---cccc-CHHHH
Q 018446 197 FDPVEIARSYEKGG--AACLSILTDEKYFKG-----SF----ENLEAVRSAGVK-------CPLLCK---EFIV-DAWQI 254 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~G--AaaISVLTD~~fF~G-----S~----edL~~VR~a~v~-------lPVLrK---DFII-dpyQI 254 (355)
..+.++++..+..+ |++|-++.--....| .. +.++.||++ ++ +||+.| |+.- |.-.+
T Consensus 151 ~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~-~~~~~~~~~~Pv~vKLsP~~~~~~i~~i 229 (335)
T TIGR01036 151 DAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQE-QDGLRRVHRVPVLVKIAPDLTESDLEDI 229 (335)
T ss_pred cCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HHhhhhccCCceEEEeCCCCCHHHHHHH
Confidence 35677777777666 999888543222222 23 334455554 44 899888 4432 23334
Q ss_pred HH-HHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCC-cEEE---EeCCHHHHHHHhcc
Q 018446 255 YY-ARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGL-TALV---EVHDEREMDRVLGI 307 (355)
Q Consensus 255 ~e-Ar~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGL-eaLV---EVH~~eELerAl~l 307 (355)
.+ +..+|||+|.++=.+.+. --|+.+..+++.++- -+|+ -|+|.+++...+.+
T Consensus 230 a~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~a 309 (335)
T TIGR01036 230 ADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRA 309 (335)
T ss_pred HHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 44 677999999987654321 123333344444431 2333 58999999999986
Q ss_pred CCCeEEEee
Q 018446 308 EGIELIGIN 316 (355)
Q Consensus 308 ~ga~iIGIN 316 (355)
||++|.|-
T Consensus 310 -GA~~Vqv~ 317 (335)
T TIGR01036 310 -GASLLQIY 317 (335)
T ss_pred -CCcHHHhh
Confidence 89887763
No 217
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=83.06 E-value=5 Score=34.84 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHcCceEEEEec------cCCC-CCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSILT------DEKY-FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT------D~~f-F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
++.+ +..+.+.|++.|.+.+ .+.+ ...+++.++.+++. .++||+.-- .|++-.+.+.+.+|||+|.+.-+
T Consensus 104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~G-Gi~~~~i~~~~~~Ga~~i~~g~~ 180 (196)
T cd00564 104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIG-GITPENAAEVLAAGADGVAVISA 180 (196)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEC-CCCHHHHHHHHHcCCCEEEEehH
Confidence 3444 4456667999997642 2232 44568899999875 788887654 67889999999999999999988
Q ss_pred cCCHHHH
Q 018446 271 VLPDLDI 277 (355)
Q Consensus 271 iL~~~~L 277 (355)
++..++.
T Consensus 181 i~~~~~~ 187 (196)
T cd00564 181 ITGADDP 187 (196)
T ss_pred hhcCCCH
Confidence 8764443
No 218
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=83.06 E-value=1.1 Score=46.91 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCceEEE-------EeccCCCCCCCH------HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH
Q 018446 200 VEIARSYEKGGAACLS-------ILTDEKYFKGSF------ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL 266 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaIS-------VLTD~~fF~GS~------edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL 266 (355)
.+-|+...++||++|. ++|-..+-+-.. -++..+.+. ..+||++-==|-++.+|..|.++|||+|.
T Consensus 277 ~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala~GA~~vm 355 (475)
T TIGR01303 277 AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALAAGASNVM 355 (475)
T ss_pred HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 3567777789999998 355554433222 122222222 37899999999999999999999999986
Q ss_pred H
Q 018446 267 L 267 (355)
Q Consensus 267 L 267 (355)
+
T Consensus 356 ~ 356 (475)
T TIGR01303 356 V 356 (475)
T ss_pred e
Confidence 5
No 219
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.00 E-value=6.4 Score=33.40 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=76.9
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCC-CCCHHHHHHHHhcCC-CCCeeccccccCHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYF-KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIY 255 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF-~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~ 255 (355)
.+++.+.-..|.. .....|+.+.+.|+++|-|.....++ ....+.+..+|+. . ++|+..|=-...++...
T Consensus 59 ~~~~~~~~~~~~~-------~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~-~~~~~v~~~~~~~~~~~~~ 130 (200)
T cd04722 59 PLGVQLAINDAAA-------AVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREA-VPDVKVVVKLSPTGELAAA 130 (200)
T ss_pred cEEEEEccCCchh-------hhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHh-cCCceEEEEECCCCccchh
Confidence 4677775554421 01122677888999999887665332 1246678888875 4 67877663222333322
Q ss_pred HHHHcCCcchHHHHhcCCHH-------HHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEee
Q 018446 256 YARTKGADAVLLIAAVLPDL-------DIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~-------~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGIN 316 (355)
....+|+|.|.+-...-+.. .+..+.......+...++. +.+.+++..++.. ||+.|++.
T Consensus 131 ~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vg 199 (200)
T cd04722 131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADGVIVG 199 (200)
T ss_pred hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCEEEec
Confidence 24678999987754433211 1122333344455544443 6777889998886 89988875
No 220
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.88 E-value=9.8 Score=35.86 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCC-HH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLP-DL 275 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~-~~ 275 (355)
+..++++..+..|..-| |+.+...+++.+..+++. +++||..-.-+.++.++.+....| +|.|.+=..-++ -.
T Consensus 144 ~a~~~~~~l~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 144 QAIRALRALEDLGLDYV----EQPLPADDLEGRAALARA-TDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred HHHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 34466677777665444 455667789999999985 899999999999999998876555 788777555554 35
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCHHHHHH
Q 018446 276 DIRYMTKICKLLGLTALVEVHDEREMDR 303 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLVEVH~~eELer 303 (355)
+...+.++|+..|+...+-.+.+--+-.
T Consensus 219 ~~~~~~~~A~~~gi~~~~~~~~~s~i~~ 246 (265)
T cd03315 219 KAQRVLAVAEALGLPVMVGSMIESGLGT 246 (265)
T ss_pred HHHHHHHHHHHcCCcEEecCccchHHHH
Confidence 7788999999999999887554444433
No 221
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=82.80 E-value=2.5 Score=43.02 Aligned_cols=75 Identities=23% Similarity=0.136 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccC--C---------CCCC-CHHHHHHHHhc------CCCCCeeccccccCHHHHHHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDE--K---------YFKG-SFENLEAVRSA------GVKCPLLCKEFIVDAWQIYYART 259 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~--~---------fF~G-S~edL~~VR~a------~v~lPVLrKDFIIdpyQI~eAr~ 259 (355)
++.++++..+.+|+++|.|=--. . +++- ...-|..++++ ..++||+.--=|.++.++..|.+
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 78899999999999999875432 1 1111 12344445442 12689999999999999999999
Q ss_pred cCCcchHHHHhcC
Q 018446 260 KGADAVLLIAAVL 272 (355)
Q Consensus 260 ~GADAVLLIaaiL 272 (355)
+|||+|-+--.+|
T Consensus 306 LGAd~V~ig~~~l 318 (392)
T cd02808 306 LGADAVGIGTAAL 318 (392)
T ss_pred cCCCeeeechHHH
Confidence 9999997755554
No 222
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=82.72 E-value=9.4 Score=35.93 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=82.1
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCceEEEEe-ccCCC---CCCCHHHHHHHHhcCCCCCeeccccccCHHHHH-HHHHc
Q 018446 187 SPSRGILRED-FDPVEIARSYEKGGAACLSIL-TDEKY---FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIY-YARTK 260 (355)
Q Consensus 187 SPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVL-TD~~f---F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~-eAr~~ 260 (355)
|||- ++-+ .+..+..+.++++|++-|=+= -|.+| |..+.+.+..+|+...++|+-.|=.+-+|+... ....+
T Consensus 10 ~pSi--~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~ 87 (228)
T PTZ00170 10 APSI--LAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKA 87 (228)
T ss_pred ehhH--hhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHc
Confidence 4652 4433 234566677778888776553 34333 355789999999863388876666666666644 56678
Q ss_pred CCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHhccCCCeEE
Q 018446 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD---EREMDRVLGIEGIELI 313 (355)
Q Consensus 261 GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~---~eELerAl~l~ga~iI 313 (355)
|||.|.+-+..-. ..+.+.++.++++|+.+=|-+.. .++++..+.....+.|
T Consensus 88 Gad~itvH~ea~~-~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 88 GASQFTFHIEATE-DDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred CCCEEEEeccCCc-hHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence 9999988877643 34889999999999988888765 4555544432234444
No 223
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.37 E-value=5.1 Score=35.85 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCC----------CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKG----------SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVL 266 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~G----------S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVL 266 (355)
++.+..+++ ..||+.|.+- .+|.+ .++.++.+++. .+ +||.. +=+|++-.+.++..+|||+|.
T Consensus 113 t~~e~~~a~-~~gaD~v~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~v~a-~GGI~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 113 TLEEAAAAL-AAGADYVGVG---PIFPTPTKKDAKAPQGLEGLREIRAA-VGDIPIVA-IGGITPENAPEVLEAGADGVA 186 (212)
T ss_pred CHHHHHHHh-HcCCCEEEEC---CccCCCCCCCCCCCCCHHHHHHHHHh-cCCCCEEE-ECCcCHHHHHHHHHcCCCEEE
Confidence 566665555 5699999653 24433 38999999875 55 88875 446799999999999999999
Q ss_pred HHHhcCCHHHHHHHH
Q 018446 267 LIAAVLPDLDIRYMT 281 (355)
Q Consensus 267 LIaaiL~~~~L~~L~ 281 (355)
+.-++...++..+.+
T Consensus 187 ~gs~i~~~~d~~~~~ 201 (212)
T PRK00043 187 VVSAITGAEDPEAAA 201 (212)
T ss_pred EeHHhhcCCCHHHHH
Confidence 998887654544433
No 224
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=82.36 E-value=14 Score=33.95 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=79.2
Q ss_pred cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CCHHHHHHHHhcCCCC
Q 018446 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAGVKC 240 (355)
Q Consensus 162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~edL~~VR~a~v~l 240 (355)
.|.+.|..... ....++.|+|-- +. + .. -...+++.+.+.|. +.+.-.|+ -+.+.|..+++...++
T Consensus 88 tL~evl~~~~~--~~~~l~ieiK~~-~~-~---~~-~~~~~~~~~~~~~~-----~~~~v~~~Sf~~~~l~~~~~~~p~~ 154 (233)
T cd08582 88 TLEEYLAIVPK--YGKKLFIEIKHP-RR-G---PE-AEEELLKLLKESGL-----LPEQIVIISFDAEALKRVRELAPTL 154 (233)
T ss_pred CHHHHHHHHHh--cCceEEEEeCCC-cc-C---cc-HHHHHHHHHHHcCC-----CCCCEEEEecCHHHHHHHHHHCCCC
Confidence 45555543221 135799999963 11 1 11 12346666666641 12222232 3678888888754555
Q ss_pred Cee--ccccccCHHH-HHHHHHcCCcchHHHHhc-CCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEEEe
Q 018446 241 PLL--CKEFIVDAWQ-IYYARTKGADAVLLIAAV-LPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 241 PVL--rKDFIIdpyQ-I~eAr~~GADAVLLIaai-L~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iIGI 315 (355)
|+. .....- ... -..+...++++|-+-... ++ .++++.++..|+.+.+= |++.+++++.+.. |++.|--
T Consensus 155 ~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~----~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~-GVdgi~T 228 (233)
T cd08582 155 ETLWLRNYKSP-KEDPRPLAKSGGAAGLDLSYEKKLN----PAFIKALRDAGLKLNVWTVDDAEDAKRLIEL-GVDSITT 228 (233)
T ss_pred cEEEEeccCcc-ccchhHHHHhhCceEEcccccccCC----HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHC-CCCEEEc
Confidence 543 222210 001 013466788876654433 43 36799999999998864 8889999999987 8877654
Q ss_pred e
Q 018446 316 N 316 (355)
Q Consensus 316 N 316 (355)
+
T Consensus 229 D 229 (233)
T cd08582 229 N 229 (233)
T ss_pred C
Confidence 4
No 225
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.35 E-value=2.2 Score=41.40 Aligned_cols=49 Identities=22% Similarity=0.509 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
.+.|+.|.++|+++||..+.|+|+..+++.+.+. ++++-|-.|+...+.
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~~kIga~~~~n~~ 125 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY--ADMLQIGSRNMQNFE 125 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh--CCEEEECcccccCHH
Confidence 7789999999999999999999999999999885 789999999998863
No 226
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=82.21 E-value=1 Score=42.39 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHH-HHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE-NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e-dL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~ 276 (355)
+..++|+...+.|+++|-|=.--....-..+ .++.+|+. +++||+. |.=++-||- -||||+| +.++|+-.+
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~-~~lPvil--fp~~~~~i~----~~aD~~~-~~sllns~~ 83 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKI-TNLPVIL--FPGNVNGLS----RYADAVF-FMSLLNSAD 83 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhh-cCCCEEE--ECCCccccC----cCCCEEE-EEEeecCCC
Confidence 3456777888999999854211111111122 34677875 7999988 788888876 4899965 566776545
Q ss_pred HHHHH----HHH---HHcCCcEEEE
Q 018446 277 IRYMT----KIC---KLLGLTALVE 294 (355)
Q Consensus 277 L~~L~----~~A---~~LGLeaLVE 294 (355)
-.+++ ..+ +++|++++-|
T Consensus 84 ~~~i~g~~~~~~~~~~~~~~e~ip~ 108 (205)
T TIGR01769 84 TYFIVGAQILGAITILKLNLEVIPM 108 (205)
T ss_pred cchhhhHHHHHHHHHHHcCCcccce
Confidence 44433 334 7889887765
No 227
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=82.11 E-value=3.4 Score=41.03 Aligned_cols=77 Identities=8% Similarity=0.001 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHcCceEEEEecc---CCCCCC---------CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcch
Q 018446 198 DPVEIARSYEKGGAACLSILTD---EKYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV 265 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD---~~fF~G---------S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAV 265 (355)
+..++++.++++|+++|.|-.- ...+.| .++.+..++++.+++||+.--=|-++-++.+... |||+|
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV 230 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV 230 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence 4678999999999999998632 123443 3888999988534899998877888888888775 89999
Q ss_pred HHHHhcCCHH
Q 018446 266 LLIAAVLPDL 275 (355)
Q Consensus 266 LLIaaiL~~~ 275 (355)
.+==++|.+.
T Consensus 231 mIGRa~l~nP 240 (333)
T PRK11815 231 MIGRAAYHNP 240 (333)
T ss_pred EEcHHHHhCC
Confidence 8866666543
No 228
>PRK13340 alanine racemase; Reviewed
Probab=82.11 E-value=23 Score=35.93 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~ 278 (355)
..++|+...+.|+.++.| .+.+....+|+++++-|+|.=-. ..+.++.++..+|- +..+=+.++++
T Consensus 80 ~~~va~~l~~~G~~~~~V--------as~~Ea~~lr~~G~~~~ilvl~~-~~~~el~~~~~~~l-----~~~v~s~~~l~ 145 (406)
T PRK13340 80 IELLMPSIIKANVPCIGI--------ASNEEARRVRELGFTGQLLRVRS-ASPAEIEQALRYDL-----EELIGDDEQAK 145 (406)
T ss_pred HHHHHHHHHHCCCCEEEE--------ccHHHHHHHHhCCCCCCEEEECC-CCHHHHHHHHHcCC-----EEEECCHHHHH
Confidence 567999999999988666 55788888998877777766322 37888888877752 34466777888
Q ss_pred HHHHHHHHcC--CcEEEEeCC------------HHHHHH---HhccCCCeEEEe
Q 018446 279 YMTKICKLLG--LTALVEVHD------------EREMDR---VLGIEGIELIGI 315 (355)
Q Consensus 279 ~L~~~A~~LG--LeaLVEVH~------------~eELer---Al~l~ga~iIGI 315 (355)
.|.++|...| +.+.++|.+ .+++.. .....+.++.||
T Consensus 146 ~l~~~a~~~~~~~~V~LkVDt~Gm~R~G~~~~e~~~~~~~~~l~~~~~l~l~Gi 199 (406)
T PRK13340 146 LLAAIAKKNGKPIDIHLALNSGGMSRNGLDMSTARGKWEALRIATLPSLGIVGI 199 (406)
T ss_pred HHHHHHHHcCCceEEEEEECCCCCCCcCCChhhhhHHHHHHHHHhCCCccEEEE
Confidence 8888888877 578999988 223333 233346788898
No 229
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=82.03 E-value=3.5 Score=40.41 Aligned_cols=59 Identities=31% Similarity=0.456 Sum_probs=44.8
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC----HHHHHHHHhcCCCCCee
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLL 243 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS----~edL~~VR~a~v~lPVL 243 (355)
++..||+=+ |-.+ ..+..++|+.+++.||++|.|.| |-|+..+ ++++..|.++ +++|++
T Consensus 72 grvpviaG~-------g~~~-t~eai~lak~a~~~Gad~il~v~-PyY~k~~~~gl~~hf~~ia~a-~~lPvi 134 (299)
T COG0329 72 GRVPVIAGV-------GSNS-TAEAIELAKHAEKLGADGILVVP-PYYNKPSQEGLYAHFKAIAEA-VDLPVI 134 (299)
T ss_pred CCCcEEEec-------CCCc-HHHHHHHHHHHHhcCCCEEEEeC-CCCcCCChHHHHHHHHHHHHh-cCCCEE
Confidence 566688876 2111 34788999999999999999998 5678777 5677788876 688865
No 230
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.02 E-value=2.5 Score=42.96 Aligned_cols=52 Identities=17% Similarity=0.434 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 272 L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
++.+.|+.|.++++++||..+.|||+.++++.+.+. ++++=|-.||...|.+
T Consensus 149 ~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~--~d~lqIga~~~~n~~L 200 (352)
T PRK13396 149 HGESALELLAAAREATGLGIITEVMDAADLEKIAEV--ADVIQVGARNMQNFSL 200 (352)
T ss_pred chHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh--CCeEEECcccccCHHH
Confidence 778889999999999999999999999999999885 8999999999998765
No 231
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.94 E-value=17 Score=34.51 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHcCceEEEEecc--------CCCC--CCCHHHHHHHHhcC--CCCCeeccccccCHHHHHHHHHcCCcch
Q 018446 198 DPVEIARSYEKGGAACLSILTD--------EKYF--KGSFENLEAVRSAG--VKCPLLCKEFIVDAWQIYYARTKGADAV 265 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD--------~~fF--~GS~edL~~VR~a~--v~lPVLrKDFIIdpyQI~eAr~~GADAV 265 (355)
+-.++++.+.+.|...|=|=-- ...| -...+.++.+++.. +.+-+|+-=-..+...|..|...|.|.|
T Consensus 23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~i 102 (263)
T cd07943 23 QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLGVDVV 102 (263)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcCCCEE
Confidence 3456777777777776644310 0001 12456666665431 1222221000123466788888899876
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHH----HhccCCCeEEEeeCCCCCccc-cChhhHHhhhc
Q 018446 266 LLIAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMDR----VLGIEGIELIGINNRNLETFE-VDNSNTKKLLE 335 (355)
Q Consensus 266 LLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELer----Al~l~ga~iIGINNRdL~Tfe-vDl~~t~~L~~ 335 (355)
=+...+=....+.+.+++|++.|+++-+-+ ++.+++.. +.++ |++.|.+- +|+- ..+....+|.+
T Consensus 103 ri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~l~----DT~G~~~P~~v~~lv~ 177 (263)
T cd07943 103 RVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY-GADCVYVT----DSAGAMLPDDVRERVR 177 (263)
T ss_pred EEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc-CCCEEEEc----CCCCCcCHHHHHHHHH
Confidence 554444334578889999999999988777 67777643 3443 78887764 2332 34555555555
Q ss_pred c
Q 018446 336 G 336 (355)
Q Consensus 336 ~ 336 (355)
.
T Consensus 178 ~ 178 (263)
T cd07943 178 A 178 (263)
T ss_pred H
Confidence 4
No 232
>PLN02826 dihydroorotate dehydrogenase
Probab=81.93 E-value=4.1 Score=42.08 Aligned_cols=74 Identities=26% Similarity=0.155 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHcCceEEEEec---------c-CCC------CCC------CHHHHHHHHhcCC--CCCeeccccccCHHH
Q 018446 198 DPVEIARSYEKGGAACLSILT---------D-EKY------FKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQ 253 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT---------D-~~f------F~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQ 253 (355)
|..++|+...++||++|.+-- + ... +.| +++.+..++++ + ++||+--==|.++..
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~-~~~~ipIIgvGGI~sg~D 355 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL-TRGKIPLVGCGGVSSGED 355 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHH
Confidence 578899999999999998752 1 111 222 46777888775 5 799999999999999
Q ss_pred HHHHHHcCCcchHHHHhcC
Q 018446 254 IYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL 272 (355)
+++...+|||+|-+--+++
T Consensus 356 a~e~i~AGAs~VQv~Ta~~ 374 (409)
T PLN02826 356 AYKKIRAGASLVQLYTAFA 374 (409)
T ss_pred HHHHHHhCCCeeeecHHHH
Confidence 9999999999999866654
No 233
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=81.92 E-value=2.1 Score=42.31 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=34.4
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446 277 IRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLET 322 (355)
Q Consensus 277 L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T 322 (355)
+..-++.+++. ....-|||.|.+|++.|+++ |+++|...|-+.+.
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a-gaDiI~LDn~~~e~ 222 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEADTPKEAIAALRA-QPDVLQLDKFSPQQ 222 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CCCEEEECCCCHHH
Confidence 34444445544 46699999999999999997 99999998776543
No 234
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.84 E-value=3.1 Score=40.78 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH-cC--CcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 276 DIRYMTKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 276 ~L~~L~~~A~~-LG--LeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
.+...++.++. ++ .-..|||.|.+|+..|+++ |+++|+..|=
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~-GaDiI~LDn~ 211 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA-GADIVMCDNM 211 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc-CCCEEEECCC
Confidence 56677777766 44 5689999999999999997 9999996664
No 235
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=81.81 E-value=13 Score=36.64 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHc--CceEEEEeccCCCCCCC---------HHHHHHHHhcCCC-----CC
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG--GAACLSILTDEKYFKGS---------FENLEAVRSAGVK-----CP 241 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~--GAaaISVLTD~~fF~GS---------~edL~~VR~a~v~-----lP 241 (355)
.||+-|-..+++. + ...+.++++..++. +|++|-+..=-....|. .+.++.||+. ++ +|
T Consensus 130 plivsi~g~~~~~--~--~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~-~~~~~~~~P 204 (327)
T cd04738 130 PLGVNIGKNKDTP--L--EDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE-RNKLGKKVP 204 (327)
T ss_pred eEEEEEeCCCCCc--c--cccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH-HhhcccCCC
Confidence 5778775554431 1 12344555544443 38888775532223221 2455666764 54 89
Q ss_pred eecc---cccc-CHHHHHH-HHHcCCcchHHHHhcC-----------------CH-----HHHHHHHHHHHHcC--CcEE
Q 018446 242 LLCK---EFIV-DAWQIYY-ARTKGADAVLLIAAVL-----------------PD-----LDIRYMTKICKLLG--LTAL 292 (355)
Q Consensus 242 VLrK---DFII-dpyQI~e-Ar~~GADAVLLIaaiL-----------------~~-----~~L~~L~~~A~~LG--LeaL 292 (355)
|..| ++-. +...+.+ +..+|||+|.++-... +. ..+.....+++.++ +..+
T Consensus 205 v~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi 284 (327)
T cd04738 205 LLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPII 284 (327)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEE
Confidence 8877 3321 1223333 4567999999876532 11 12455556666663 3322
Q ss_pred --EEeCCHHHHHHHhccCCCeEEEee
Q 018446 293 --VEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 293 --VEVH~~eELerAl~l~ga~iIGIN 316 (355)
=-|+|.+++.+.+.+ ||+.|+|-
T Consensus 285 ~~GGI~t~~da~e~l~a-GAd~V~vg 309 (327)
T cd04738 285 GVGGISSGEDAYEKIRA-GASLVQLY 309 (327)
T ss_pred EECCCCCHHHHHHHHHc-CCCHHhcc
Confidence 248999999999985 99988763
No 236
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.75 E-value=4.4 Score=39.76 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCC-CCCeec
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGV-KCPLLC 244 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v-~lPVLr 244 (355)
++..||+=+--.|. .+..++|+.+++.||+++.|++ |.||..+. ++.+.|.++ + ++||+-
T Consensus 76 grvpvi~Gv~~~~t--------~~ai~~a~~A~~~Gad~vlv~~-P~y~~~~~~~l~~yf~~va~a-~~~lPv~i 140 (309)
T cd00952 76 GRVPVFVGATTLNT--------RDTIARTRALLDLGADGTMLGR-PMWLPLDVDTAVQFYRDVAEA-VPEMAIAI 140 (309)
T ss_pred CCCCEEEEeccCCH--------HHHHHHHHHHHHhCCCEEEECC-CcCCCCCHHHHHHHHHHHHHh-CCCCcEEE
Confidence 56678887733322 3678999999999999999998 56887764 556667775 6 588763
No 237
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.65 E-value=3.7 Score=40.87 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=76.2
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcC--ceEEEEeccCCCCCCC---------HHHHHHHHhcCCC-----C
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGG--AACLSILTDEKYFKGS---------FENLEAVRSAGVK-----C 240 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~G--AaaISVLTD~~fF~GS---------~edL~~VR~a~v~-----l 240 (355)
..||+-|-..-.+ .....+.++++..++.+ |++|-+..=-....|. .+-++.||++ ++ +
T Consensus 138 ~pvivsI~~~~~~----~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~ 212 (344)
T PRK05286 138 IPLGINIGKNKDT----PLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYV 212 (344)
T ss_pred CcEEEEEecCCCC----CcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCC
Confidence 3578877432111 11224555555555444 8888775432222221 2556677875 65 9
Q ss_pred Ceecc---cccc-CHHHHHH-HHHcCCcchHHHHhcCCH----------------------HHHHHHHHHHHHcCC-cEE
Q 018446 241 PLLCK---EFIV-DAWQIYY-ARTKGADAVLLIAAVLPD----------------------LDIRYMTKICKLLGL-TAL 292 (355)
Q Consensus 241 PVLrK---DFII-dpyQI~e-Ar~~GADAVLLIaaiL~~----------------------~~L~~L~~~A~~LGL-eaL 292 (355)
||+.| |+-. +.-.+.+ +..+|||+|.++-...+. ..++....+...++- -+|
T Consensus 213 PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipI 292 (344)
T PRK05286 213 PLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPI 292 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 99887 4322 1223433 345799999998765211 134444455555521 133
Q ss_pred E---EeCCHHHHHHHhccCCCeEEEe
Q 018446 293 V---EVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 293 V---EVH~~eELerAl~l~ga~iIGI 315 (355)
+ -|+|.+++.+.+.+ ||+.|.|
T Consensus 293 ig~GGI~s~eda~e~l~a-GAd~V~v 317 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRA-GASLVQI 317 (344)
T ss_pred EEECCCCCHHHHHHHHHc-CCCHHHH
Confidence 3 68999999999885 8988766
No 238
>PRK07695 transcriptional regulator TenI; Provisional
Probab=81.62 E-value=8.3 Score=34.98 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHH----HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~----~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
...+++ ..++|+.+|=+- |+. .+.+++. .+++.++ +. --+||+.+ ...|..+|+|+|-|-..-+..
T Consensus 17 ~~~~~~-~~~~g~~~iqlR-~k~---~~~~~~~~~~~~l~~~~~--~~--~~liin~~-~~la~~~~~~gvHl~~~~~~~ 86 (201)
T PRK07695 17 LVAVAM-QIHSEVDYIHIR-ERE---KSAKELYEGVESLLKKGV--PA--SKLIINDR-VDIALLLNIHRVQLGYRSFSV 86 (201)
T ss_pred HHHHHH-HHhCCCCEEEEc-CCC---CCHHHHHHHHHHHHHhCC--CC--CeEEEECH-HHHHHHcCCCEEEeCcccCCH
Confidence 445565 456788776554 433 4444433 3333222 21 11444433 556889999999775544443
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
.+++.. . -++-.-+++||.+++.++.++ |++.|+.-.
T Consensus 87 ~~~r~~---~--~~~~ig~s~~s~e~a~~a~~~-Gadyi~~g~ 123 (201)
T PRK07695 87 RSVREK---F--PYLHVGYSVHSLEEAIQAEKN-GADYVVYGH 123 (201)
T ss_pred HHHHHh---C--CCCEEEEeCCCHHHHHHHHHc-CCCEEEECC
Confidence 333322 1 166778899999999999987 999997644
No 239
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=81.58 E-value=2.9 Score=40.35 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
.+.|+.|-++|+++||..+.|+||.++++.+.+. ++++=|-.|++..+.
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~--~d~lkI~s~~~~n~~ 123 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY--ADILQIGARNMQNFE 123 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh--CCEEEECcccccCHH
Confidence 7789999999999999999999999999999875 789999999887754
No 240
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=81.43 E-value=4.4 Score=40.73 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCceEEeEeeecCCCCC---CCCC-----CCCHHHHHHHHH-HcCceEEEEec---cCCCCCCCHHHHH----HHHhcCC
Q 018446 175 GLPALIAEVKKASPSRG---ILRE-----DFDPVEIARSYE-KGGAACLSILT---DEKYFKGSFENLE----AVRSAGV 238 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG---~I~~-----~~Dp~~iA~~Ye-~~GAaaISVLT---D~~fF~GS~edL~----~VR~a~v 238 (355)
++|.|-.||----| .+ .+.. --||.++|+.-. +.||+.|-|.. |+.-..-+.+++. .|.++ +
T Consensus 46 n~p~ia~~v~D~~~-~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea-v 123 (319)
T PRK04452 46 NPPVIAMEVFDMPP-EDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA-V 123 (319)
T ss_pred CCCeEEEEEecCCC-cccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh-C
Confidence 34566667765533 22 1111 237899999665 89999999996 5544344554444 34443 8
Q ss_pred CCCeec---cccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-CCHHHHHHHhccCCCeEEE
Q 018446 239 KCPLLC---KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIG 314 (355)
Q Consensus 239 ~lPVLr---KDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-H~~eELerAl~l~ga~iIG 314 (355)
++|+.- .+-=-|+--+..+...-.+-=.||.++= .+..+.+..+|+.+|-.+++.. .|.+.+.+.... +.=.|
T Consensus 124 d~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-~en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~--l~~~G 200 (319)
T PRK04452 124 DVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-EDNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNIL--LTELG 200 (319)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC-HHHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHH--HHHcC
Confidence 899851 1111156666666666555533444443 4479999999999999999887 555544443332 22345
Q ss_pred eeCC
Q 018446 315 INNR 318 (355)
Q Consensus 315 INNR 318 (355)
|.+-
T Consensus 201 i~~e 204 (319)
T PRK04452 201 VPRE 204 (319)
T ss_pred CCHH
Confidence 5444
No 241
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=81.16 E-value=8 Score=36.07 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=69.6
Q ss_pred HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHH-HHhcCCHHHHHH
Q 018446 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL-IAAVLPDLDIRY 279 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLL-IaaiL~~~~L~~ 279 (355)
+.++...++||..|-. .+...++...+.. ...|++.= ..++-|+.+|..+|||.|-+ -+..++.+.++.
T Consensus 74 ~~~~~a~~aGA~fivs-------p~~~~~v~~~~~~-~~~~~~~G--~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~ 143 (206)
T PRK09140 74 EQVDRLADAGGRLIVT-------PNTDPEVIRRAVA-LGMVVMPG--VATPTEAFAALRAGAQALKLFPASQLGPAGIKA 143 (206)
T ss_pred HHHHHHHHcCCCEEEC-------CCCCHHHHHHHHH-CCCcEEcc--cCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 3556666789987643 5556666666653 67777766 88999999999999999975 234566655555
Q ss_pred HHHHHH-HcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 280 MTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 280 L~~~A~-~LGLeaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
+..... .+=+-++=-| |.+.+...+++ |++.+++-.
T Consensus 144 l~~~~~~~ipvvaiGGI-~~~n~~~~~~a-Ga~~vav~s 180 (206)
T PRK09140 144 LRAVLPPDVPVFAVGGV-TPENLAPYLAA-GAAGFGLGS 180 (206)
T ss_pred HHhhcCCCCeEEEECCC-CHHHHHHHHHC-CCeEEEEeh
Confidence 443332 1222233233 77888888886 999998543
No 242
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=81.04 E-value=5.3 Score=39.31 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 276 DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 276 ~L~~L~~~A~~L--GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
.+...++.+++. +...-|||.|.+|+..|+++ |+++|...|-+..
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~-GaDiI~lDn~~~e 220 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQA-SPDILQLDKFTPQ 220 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CcCEEEECCCCHH
Confidence 566777777776 67899999999999999997 9999999864443
No 243
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=80.42 E-value=16 Score=36.85 Aligned_cols=145 Identities=21% Similarity=0.238 Sum_probs=97.9
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-----eccCCCCCC----CHHHHHHHHhcCCCCCeecc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCK 245 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-----LTD~~fF~G----S~edL~~VR~a~v~lPVLrK 245 (355)
+++.+||. | ..+....-..++|+...+.||.++=. -|-+.-|+| .+..|.++++. ..+|++.
T Consensus 92 ~~~~~IAG-----P--CsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~-~Gl~v~t- 162 (335)
T PRK08673 92 GKPVVIAG-----P--CSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE-TGLPIVT- 162 (335)
T ss_pred CceEEEEe-----c--CccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH-cCCcEEE-
Confidence 34667777 3 22333334567888888899985533 366677888 36677777774 7899998
Q ss_pred ccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---CCCeEEEeeCCC
Q 018446 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRN 319 (355)
Q Consensus 246 DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l---~ga~iIGINNRd 319 (355)
=+.|+.|+..+..+ +|.+-+=+.-+.. ..|++.+-++|.-+++.-. |.+|+..|.+. .|..=|.+-.|-
T Consensus 163 -ev~d~~~~~~l~~~-vd~lqIgAr~~~N---~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG 237 (335)
T PRK08673 163 -EVMDPRDVELVAEY-VDILQIGARNMQN---FDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERG 237 (335)
T ss_pred -eeCCHHHHHHHHHh-CCeEEECcccccC---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 46799999999988 8866555555555 4578888899999999976 78998877532 244434444454
Q ss_pred CCcc------ccChhhHHhh
Q 018446 320 LETF------EVDNSNTKKL 333 (355)
Q Consensus 320 L~Tf------evDl~~t~~L 333 (355)
..|| .+|+..-..|
T Consensus 238 ~~tf~~~~~~~ldl~ai~~l 257 (335)
T PRK08673 238 IRTFETATRNTLDLSAVPVI 257 (335)
T ss_pred CCCCCCcChhhhhHHHHHHH
Confidence 4444 4555544444
No 244
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=80.42 E-value=3.1 Score=42.12 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=53.0
Q ss_pred HHHHHHHHcCceEEEEec-cCCC---CCCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 201 EIARSYEKGGAACLSILT-DEKY---FKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLT-D~~f---F~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
+.|+...+.||++|.|-- -... -..+++.|..++++ + ++||+.-==|-.+..|.+|.++|||+|.+=-.+|
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a-~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l 309 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEA-VNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVL 309 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHH-hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 567777788999998831 0111 12346788888875 5 6999999999999999999999999987644443
No 245
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=80.41 E-value=8.7 Score=38.17 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCceEEEEeccC------------------CCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDE------------------KYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~------------------~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA 257 (355)
.+.|+..++.|+++|-|-.-. .||.+ ..+.|..+++..+++||+.--=|-++.++.+|
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ka 272 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKA 272 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHH
Confidence 578999999999999985421 11111 12456666652368999999999999999999
Q ss_pred HHcCCcchHHHHhc
Q 018446 258 RTKGADAVLLIAAV 271 (355)
Q Consensus 258 r~~GADAVLLIaai 271 (355)
..+|||+|-+=-.+
T Consensus 273 LalGAd~V~igr~~ 286 (333)
T TIGR02151 273 IALGADAVGMARPF 286 (333)
T ss_pred HHhCCCeehhhHHH
Confidence 99999999873333
No 246
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=80.33 E-value=4.3 Score=40.08 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=54.4
Q ss_pred CHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEee
Q 018446 250 DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 250 dpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGIN 316 (355)
+.-|..+|..+|||.|+| .-++++++++.+++..+.+..+++|+. |.+-+...... |+++|-+-
T Consensus 198 tleqa~ea~~agaDiI~L--Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t-GvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL--DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC-GIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc-CCCEEEEC
Confidence 788999999999999998 778899999999988777788999998 67777776665 89988553
No 247
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.33 E-value=3.4 Score=40.11 Aligned_cols=79 Identities=14% Similarity=0.373 Sum_probs=57.4
Q ss_pred CCHHHHHHHHhcCCCCC-eecccc------ccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe--
Q 018446 225 GSFENLEAVRSAGVKCP-LLCKEF------IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-- 295 (355)
Q Consensus 225 GS~edL~~VR~a~v~lP-VLrKDF------IIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-- 295 (355)
.-++.+.++|+. .++| ||+--+ .++.| +.+++.+|+|+|++- -|+.++..++.+.|++.||+.+.=|
T Consensus 78 ~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F-~~~~~~aGvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKF-IKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHH-HHHHHHcCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 458889999974 7889 444333 22222 899999999997543 4567789999999999999987655
Q ss_pred C-CHHHHHHHhcc
Q 018446 296 H-DEREMDRVLGI 307 (355)
Q Consensus 296 H-~~eELerAl~l 307 (355)
+ +.+.+++..+.
T Consensus 154 tT~~eri~~i~~~ 166 (263)
T CHL00200 154 TSSKSRIQKIARA 166 (263)
T ss_pred CCCHHHHHHHHHh
Confidence 3 35677676554
No 248
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=80.22 E-value=17 Score=33.65 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHcCceEEEEeccCC-----CCCCCHHHHHHHHhcCCCCCe--eccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSILTDEK-----YFKGSFENLEAVRSAGVKCPL--LCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~-----fF~GS~edL~~VR~a~v~lPV--LrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
+-.++++...+.|...|=|=.=.. .+...++.++.+++...++++ |++- ..-.+..++.+|+|.|.+...
T Consensus 20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~i~i~~~ 96 (265)
T cd03174 20 DKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDEVRIFDS 96 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCEEEEEEe
Confidence 344667777777777765543222 114456667777764212333 3321 166788888899988877766
Q ss_pred cC--------------CHHHHHHHHHHHHHcCCcEEEEe-------CCHHHHHH----HhccCCCeEEEeeCCCCCcccc
Q 018446 271 VL--------------PDLDIRYMTKICKLLGLTALVEV-------HDEREMDR----VLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 271 iL--------------~~~~L~~L~~~A~~LGLeaLVEV-------H~~eELer----Al~l~ga~iIGINNRdL~Tfev 325 (355)
.- .-+.....+++|++.|+++-+-+ +|.+++.. +.++ |++.|.+..- +-..
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~i~l~Dt---~G~~ 172 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA-GADEISLKDT---VGLA 172 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc-CCCEEEechh---cCCc
Confidence 54 24567788899999999988877 66666543 4444 8888877543 2235
Q ss_pred ChhhHHhhhcc
Q 018446 326 DNSNTKKLLEG 336 (355)
Q Consensus 326 Dl~~t~~L~~~ 336 (355)
.++...+++..
T Consensus 173 ~P~~v~~li~~ 183 (265)
T cd03174 173 TPEEVAELVKA 183 (265)
T ss_pred CHHHHHHHHHH
Confidence 56666666554
No 249
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.21 E-value=1.1 Score=47.31 Aligned_cols=88 Identities=22% Similarity=0.177 Sum_probs=57.5
Q ss_pred EeEeeecCCCC-CCCCCCCCHHHHHHHHHHcCceEE-------EEeccCCCCCCC---HHHHHHHHhc--------CCCC
Q 018446 180 IAEVKKASPSR-GILREDFDPVEIARSYEKGGAACL-------SILTDEKYFKGS---FENLEAVRSA--------GVKC 240 (355)
Q Consensus 180 IAEvKRaSPSk-G~I~~~~Dp~~iA~~Ye~~GAaaI-------SVLTD~~fF~GS---~edL~~VR~a--------~v~l 240 (355)
|.++|+..|.. -++..+.--.+-|+...++||++| |++|-..-.++. +.-+..++++ +..+
T Consensus 274 i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~ 353 (502)
T PRK07107 274 LDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYI 353 (502)
T ss_pred HHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcc
Confidence 45555555521 122222222346667778899999 567776555443 3333333332 2348
Q ss_pred CeeccccccCHHHHHHHHHcCCcchHH
Q 018446 241 PLLCKEFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 241 PVLrKDFIIdpyQI~eAr~~GADAVLL 267 (355)
||++.-=|-.+..|..|.++|||+|.+
T Consensus 354 ~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 354 PICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred eEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 999999999999999999999999976
No 250
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.20 E-value=4.3 Score=39.76 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=91.0
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCce----EE--EEeccCCC--CCCC-HH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA----CL--SILTDEKY--FKGS-FE 228 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAa----aI--SVLTD~~f--F~GS-~e 228 (355)
..++.|..++++ ....|+.=.|..|.- -+.+.-..+. ||+. .+ +||-..+| |-|+ .+
T Consensus 105 T~t~~~v~~~~~------~~~~i~~TRKt~Pg~-------r~~~k~Av~~-GGg~~HR~gL~d~vlikdnHi~~~g~i~~ 170 (273)
T PRK05848 105 TLTSRYVEALES------HKVKLLDTRKTRPLL-------RIFEKYSVRN-GGASNHRLGLDDCLMLKDTHLKHIKDLKE 170 (273)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCcch-------hHHHHHHHHh-CCCccccCCchhhhCcCHHHHHHHCcHHH
Confidence 346778887754 235778777777742 2222222343 4443 23 46666664 3355 45
Q ss_pred HHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHH
Q 018446 229 NLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV 304 (355)
Q Consensus 229 dL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerA 304 (355)
.+..+|+... ..+|.- -+=.--|..+|..+|||.|+| .=.+.+++++.++......-.+++|+. |++.+...
T Consensus 171 ~v~~~k~~~p~~~~I~V--Ev~tleea~~A~~~GaDiI~L--Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~y 246 (273)
T PRK05848 171 FIQHARKNIPFTAKIEI--ECESLEEAKNAMNAGADIVMC--DNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAY 246 (273)
T ss_pred HHHHHHHhCCCCceEEE--EeCCHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHH
Confidence 5777776411 122222 233778999999999998885 556788888888876554556778875 88999998
Q ss_pred hccCCCeEEEeeC
Q 018446 305 LGIEGIELIGINN 317 (355)
Q Consensus 305 l~l~ga~iIGINN 317 (355)
..+ |+++|.+-.
T Consensus 247 a~~-GvD~IsvG~ 258 (273)
T PRK05848 247 AKS-GVDAISSGS 258 (273)
T ss_pred HHc-CCCEEEeCh
Confidence 886 999998753
No 251
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=80.02 E-value=7.3 Score=38.90 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHcCceEEEEecc---------C------CCCCC------CHHHHHHHHhcCC--CCCeeccccccCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTD---------E------KYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD---------~------~fF~G------S~edL~~VR~a~v--~lPVLrKDFIIdpyQI 254 (355)
|+.++|+..+++||++|+...- + ..+.| ++..+..+++. + ++||.-===|.++-|+
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~-~~~~ipiig~GGI~~~~da 303 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAE-LQGRLPIIGVGGISSAQDA 303 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence 5889999999999999986321 1 11112 24566666664 4 6899988889999999
Q ss_pred HHHHHcCCcchHHHHhcC
Q 018446 255 YYARTKGADAVLLIAAVL 272 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL 272 (355)
++...+|||+|-+--+++
T Consensus 304 ~e~l~aGA~~Vqv~ta~~ 321 (335)
T TIGR01036 304 LEKIRAGASLLQIYSGFI 321 (335)
T ss_pred HHHHHcCCcHHHhhHHHH
Confidence 999999999999877764
No 252
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=79.99 E-value=5.2 Score=39.65 Aligned_cols=70 Identities=27% Similarity=0.342 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCceEEEEecc-----------C---------CCC----CCCHHHHHHHHhcCC-CCCeeccccccCHHHH
Q 018446 200 VEIARSYEKGGAACLSILTD-----------E---------KYF----KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQI 254 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD-----------~---------~fF----~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI 254 (355)
.+.|+..++.|+++|-|=.- . .+| ....+.|..++++ + ++||+.--=|-++.+|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~-~~~ipIiasGGIr~~~dv 270 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSA-LPDLPLIASGGIRNGLDI 270 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHH-cCCCcEEEECCCCCHHHH
Confidence 47889999999999987321 0 111 1224677777775 5 8999999999999999
Q ss_pred HHHHHcCCcchHHHHh
Q 018446 255 YYARTKGADAVLLIAA 270 (355)
Q Consensus 255 ~eAr~~GADAVLLIaa 270 (355)
..|..+|||+|-+=-.
T Consensus 271 ~kal~lGAd~V~i~~~ 286 (326)
T cd02811 271 AKALALGADLVGMAGP 286 (326)
T ss_pred HHHHHhCCCEEEEcHH
Confidence 9999999999976443
No 253
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.97 E-value=2.5 Score=41.77 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.8
Q ss_pred CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 288 GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
+.-.-|||||.+|+.+|+++ |+++|+..|-++.
T Consensus 196 ~~~I~VEv~tleea~eA~~~-GaD~I~LDn~~~e 228 (288)
T PRK07428 196 PLTIEVETETLEQVQEALEY-GADIIMLDNMPVD 228 (288)
T ss_pred CCEEEEECCCHHHHHHHHHc-CCCEEEECCCCHH
Confidence 46789999999999999996 9999999966554
No 254
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.94 E-value=6.5 Score=38.02 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHHHhc
Q 018446 227 FENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 227 ~edL~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLIaai 271 (355)
.+++..+|++ +++||+. -|.| ++-|+.++..+ ||+|+.=-++
T Consensus 189 ~~~i~~vk~~-~~~pv~v-GfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 189 AELVARLKAH-TDLPVAV-GFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred HHHHHHHHhc-CCCcEEE-EcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 4588999986 7999998 9999 88999999975 9999874443
No 255
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=79.91 E-value=3.5 Score=40.91 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=46.7
Q ss_pred CC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 272 LP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 272 L~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
++ .+-|+.|.+...++||-++-|||+.++++.+.+. +++|=|-.||-..|++
T Consensus 70 ~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~--vDilQIgAr~~rntdL 122 (281)
T PRK12457 70 VGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV--ADVLQVPAFLARQTDL 122 (281)
T ss_pred CCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh--CeEEeeCchhhchHHH
Confidence 66 6679999999999999999999999999999884 8999999999888743
No 256
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.82 E-value=43 Score=31.25 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHHcCCcchHHHHhcC----C--------HHHHHHHHHHHHHcCCcEEEEeC-----------CHHHHHHHhccCCC
Q 018446 254 IYYARTKGADAVLLIAAVL----P--------DLDIRYMTKICKLLGLTALVEVH-----------DEREMDRVLGIEGI 310 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL----~--------~~~L~~L~~~A~~LGLeaLVEVH-----------~~eELerAl~l~ga 310 (355)
|..|+.+||..|.+...-. + .+.|.++.++|.+.|+...+|-| |.+++.+.++.-+.
T Consensus 91 i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~~ 170 (258)
T PRK09997 91 IRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGC 170 (258)
T ss_pred HHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHhCC
Confidence 4567788888765543222 1 13567778889999999999964 45666665543244
Q ss_pred eEEEee
Q 018446 311 ELIGIN 316 (355)
Q Consensus 311 ~iIGIN 316 (355)
+-+|++
T Consensus 171 ~~v~l~ 176 (258)
T PRK09997 171 CNLKIQ 176 (258)
T ss_pred CCEEEE
Confidence 456654
No 257
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=79.74 E-value=6 Score=37.31 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHcCceEEEEeccCCCCCC------CHHHHHHHHhc----CCCCCeeccccccCHHHHHHHHHcCC
Q 018446 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSA----GVKCPLLCKEFIVDAWQIYYARTKGA 262 (355)
Q Consensus 193 I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G------S~edL~~VR~a----~v~lPVLrKDFIIdpyQI~eAr~~GA 262 (355)
+++.. |.+....|.. -.+.+-|+|=..-|+| +++.++.+|+. +.++||-. |..|.+--+.+...+||
T Consensus 113 lnP~T-p~~~i~~~l~-~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGA 189 (220)
T PRK08883 113 LNPAT-PLHHLEYIMD-KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGA 189 (220)
T ss_pred eCCCC-CHHHHHHHHH-hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCC
Confidence 34443 3444455544 4688888887777888 56677777764 11377766 99999999999999999
Q ss_pred cchHHHHhcCCHHHHHHHHH
Q 018446 263 DAVLLIAAVLPDLDIRYMTK 282 (355)
Q Consensus 263 DAVLLIaaiL~~~~L~~L~~ 282 (355)
|.+...-++...++.++.++
T Consensus 190 d~vVvGSaIf~~~d~~~~i~ 209 (220)
T PRK08883 190 DMFVAGSAIFGQPDYKAVID 209 (220)
T ss_pred CEEEEeHHHhCCCCHHHHHH
Confidence 99999988886545444433
No 258
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=79.42 E-value=4.6 Score=38.70 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=49.8
Q ss_pred HHHHHHHcCCcchHHHHh-------------cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEE
Q 018446 253 QIYYARTKGADAVLLIAA-------------VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 253 QI~eAr~~GADAVLLIaa-------------iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iI 313 (355)
++.+....|+|.|-+.+. .++++++..+++.|++.|+..-+-+++...++.++++ |.+.|
T Consensus 125 ~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~-G~~~i 197 (342)
T cd01299 125 AVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRA-GVDTI 197 (342)
T ss_pred HHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCCEE
Confidence 455566679999877663 5889999999999999999999999999999999986 76654
No 259
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.40 E-value=10 Score=36.85 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 227 FENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 227 ~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
++.+..++++ + ++||+--==|.+..++.+...+|||+|.+--+++
T Consensus 230 l~~v~~~~~~-~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 230 LGNVRTFRRL-LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALG 276 (294)
T ss_pred HHHHHHHHHh-cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhh
Confidence 4666777775 5 4999999999999999999999999999988877
No 260
>PRK08508 biotin synthase; Provisional
Probab=79.39 E-value=16 Score=35.32 Aligned_cols=122 Identities=13% Similarity=0.013 Sum_probs=74.0
Q ss_pred CCHHHHH---HHHHHcCceEEEEeccCCCC-CCCHHHHH----HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 197 FDPVEIA---RSYEKGGAACLSILTDEKYF-KGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 197 ~Dp~~iA---~~Ye~~GAaaISVLTD~~fF-~GS~edL~----~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
.+|+++. +...+.|+..+++.|....+ .-.++++. .+|+....+.+..-.-.+++-|+.+=+.+|+|++-+-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~ 119 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHN 119 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEccc
Confidence 3555444 44455799999887655433 33555555 4454323455544567778999999999999999852
Q ss_pred --------HhcC---CHHHHHHHHHHHHHcCCcE----EEEe-CCHHHHHH----HhccCCCeEEEeeCCC
Q 018446 269 --------AAVL---PDLDIRYMTKICKLLGLTA----LVEV-HDEREMDR----VLGIEGIELIGINNRN 319 (355)
Q Consensus 269 --------aaiL---~~~~L~~L~~~A~~LGLea----LVEV-H~~eELer----Al~l~ga~iIGINNRd 319 (355)
-.+- +.++..+.++.|+++|++. ++-. .+.+|+.. ..++ +.+-|-+|--.
T Consensus 120 lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L-~~~svpl~~~~ 189 (279)
T PRK08508 120 LETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL-SPHSTPINFFI 189 (279)
T ss_pred ccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcC-CCCEEeeCCcC
Confidence 1222 2344445778899999866 4443 23444443 2344 66667776643
No 261
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=79.39 E-value=8.3 Score=38.70 Aligned_cols=48 Identities=27% Similarity=0.245 Sum_probs=39.3
Q ss_pred CcEEEEeCCHHHHHHHhc------cCCCeEEEeeCC--CCCccccChhhHHhhhccc
Q 018446 289 LTALVEVHDEREMDRVLG------IEGIELIGINNR--NLETFEVDNSNTKKLLEGE 337 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~------l~ga~iIGINNR--dL~TfevDl~~t~~L~~~~ 337 (355)
...-|||.|.+|+..|++ + |+++|...|- .....+.+++...+..+.+
T Consensus 204 ~kIeVEv~tleea~ea~~~~~~~~a-gaDiImLDnm~~~~~~~~~~~e~l~~av~~~ 259 (308)
T PLN02716 204 MKIEVETRTLEEVKEVLEYLSDTKT-SLTRVMLDNMVVPLENGDVDVSMLKEAVELI 259 (308)
T ss_pred eeEEEEECCHHHHHHHHHhcccccC-CCCEEEeCCCcccccccCCCHHHHHHHHHhh
Confidence 568999999999999999 7 9999999999 4466667777766666543
No 262
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=79.25 E-value=9.8 Score=37.24 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCC-HHHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLP-DLDI 277 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~-~~~L 277 (355)
.++++..++.|... -|+.+..++++.+..+|+. +.+||..-+-+.++.++.++...| +|.|-+=..-.+ -.+.
T Consensus 206 ~~~~~~l~~~~i~~----iEqP~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~ 280 (357)
T cd03316 206 IRLARALEEYDLFW----FEEPVPPDDLEGLARLRQA-TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEA 280 (357)
T ss_pred HHHHHHhCccCCCe----EcCCCCccCHHHHHHHHHh-CCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 35555665555332 3555677899999999986 899999999999999999888755 777766444443 4577
Q ss_pred HHHHHHHHHcCCcEEEEeCCH
Q 018446 278 RYMTKICKLLGLTALVEVHDE 298 (355)
Q Consensus 278 ~~L~~~A~~LGLeaLVEVH~~ 298 (355)
..+.++|++.|+.+. +|+.
T Consensus 281 ~~i~~~a~~~g~~~~--~~~~ 299 (357)
T cd03316 281 KKIAALAEAHGVRVA--PHGA 299 (357)
T ss_pred HHHHHHHHHcCCeEe--ccCC
Confidence 889999999999955 4554
No 263
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=79.25 E-value=6.6 Score=39.06 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCceEEEEec----cC-----CCCC-CC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchH
Q 018446 199 PVEIARSYEKGGAACLSILT----DE-----KYFK-GS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVL 266 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLT----D~-----~fF~-GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVL 266 (355)
..++++.+++.|++.|+|-. ++ .++. |. .+....+|++ +++||+.-.=+.++.++.++...| +|.|-
T Consensus 226 ~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 226 VVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA-VDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh-CCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 45889999999999999932 11 1121 22 3445788886 899999999999999999999987 99998
Q ss_pred HHHhcCCHHHH
Q 018446 267 LIAAVLPDLDI 277 (355)
Q Consensus 267 LIaaiL~~~~L 277 (355)
+==.+|.+.++
T Consensus 305 ~gR~~l~dP~~ 315 (353)
T cd02930 305 MARPFLADPDF 315 (353)
T ss_pred hhHHHHHCccH
Confidence 87777665444
No 264
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=79.10 E-value=17 Score=34.72 Aligned_cols=113 Identities=17% Similarity=0.261 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCC---
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLP--- 273 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~--- 273 (355)
+|..+.+.|.++||+.|++-.|... ..-...|..+|+++...= .|..+ .|...++-..-=.|.||++.--=+
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~-~~~~~~i~~Ik~~G~kaGlalnP~---T~~~~l~~~l~~vD~VLvMsV~PGf~G 145 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETIN-GQAFRLIDEIRRAGMKVGLVLNPE---TPVESIKYYIHLLDKITVMTVDPGFAG 145 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCc-chHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHhcCEEEEEEEcCCCcc
Confidence 7999999999999999999999532 123467788888653311 22222 233333344445788777543211
Q ss_pred -------HHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHhccCCCeEEEe
Q 018446 274 -------DLDIRYMTKICKLLGLTALVEVHD---EREMDRVLGIEGIELIGI 315 (355)
Q Consensus 274 -------~~~L~~L~~~A~~LGLeaLVEVH~---~eELerAl~l~ga~iIGI 315 (355)
-+.+++|.++-.+.|++.++||.- .+-+..+.++ ||+++-+
T Consensus 146 Q~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~a-Gad~~V~ 196 (229)
T PRK09722 146 QPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEA-GADVFIV 196 (229)
T ss_pred hhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHc-CCCEEEE
Confidence 135666667777889999999975 8888888886 9997733
No 265
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=78.83 E-value=3.4 Score=39.28 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
+..+-|++|.++||+|+.|-+-. +.++++.+.++ +++||+.. .+.- .+-+.+-..+|..-|..-...+
T Consensus 161 eai~Ra~ay~~AGAD~v~v~~~~-----~~~~~~~~~~~-~~~Pl~~~~~~~~~-~~~~~~l~~lG~~~v~~~~~~~ 230 (243)
T cd00377 161 EAIERAKAYAEAGADGIFVEGLK-----DPEEIRAFAEA-PDVPLNVNMTPGGN-LLTVAELAELGVRRVSYGLALL 230 (243)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC-----CHHHHHHHHhc-CCCCEEEEecCCCC-CCCHHHHHHCCCeEEEEChHHH
Confidence 57789999999999999986543 88999999986 88998754 1110 1346666677888776644443
No 266
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.50 E-value=15 Score=35.15 Aligned_cols=136 Identities=19% Similarity=0.146 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHH---HHHHhcCCCCCeeccccccC-HHHHHHHHHcCCcchHHHHhcC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL---~~VR~a~v~lPVLrKDFIId-pyQI~eAr~~GADAVLLIaaiL 272 (355)
-||.++|+.|.+.||.-|-|.==..-+.|...++ +++.+. + .|| .=+-.|. .-++.....+|||-|.+-...+
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~-~-~~v-~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF-A-EHI-QIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh-c-CcE-EEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 4999999999999999887654433567776555 455443 4 575 4444444 6788888999999988766666
Q ss_pred C-HHHHHHHHHHHHH--cCCcE---EEEeCC--------HHH-HHHHhccCCCeEEEeeCCCCCc--cccChhhHHhhhc
Q 018446 273 P-DLDIRYMTKICKL--LGLTA---LVEVHD--------ERE-MDRVLGIEGIELIGINNRNLET--FEVDNSNTKKLLE 335 (355)
Q Consensus 273 ~-~~~L~~L~~~A~~--LGLea---LVEVH~--------~eE-LerAl~l~ga~iIGINNRdL~T--fevDl~~t~~L~~ 335 (355)
. ++.++++.++..+ +++++ -|-+|. ..| +++.... |+.=|-+++-|... --.|++...++..
T Consensus 107 ~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~ 185 (241)
T PRK14114 107 EDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTRKIAI 185 (241)
T ss_pred CCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhc-CCCEEEEEeechhhcCCCcCHHHHHHHHH
Confidence 5 4445555322111 22221 122232 233 3444443 66666666544433 3367777777765
Q ss_pred c
Q 018446 336 G 336 (355)
Q Consensus 336 ~ 336 (355)
.
T Consensus 186 ~ 186 (241)
T PRK14114 186 E 186 (241)
T ss_pred H
Confidence 4
No 267
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=78.48 E-value=3.6 Score=41.83 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=31.1
Q ss_pred CCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 239 ~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
++||+.-==|-++..|..|.++|||+|.+=-.++.
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~ 290 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLAR 290 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcc
Confidence 58999999999999999999999999998666554
No 268
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=78.44 E-value=7.2 Score=38.42 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCceEEEEe----ccCC--CC-CC-CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHH
Q 018446 199 PVEIARSYEKGGAACLSIL----TDEK--YF-KG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA 269 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVL----TD~~--fF-~G-S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIa 269 (355)
..++++..++.|.+.|+|- |... .+ .+ ..+.+..+|+. +++||+.-.=|.++.+..++...| ||+|-+==
T Consensus 243 ~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR 321 (336)
T cd02932 243 SVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESGRADLVALGR 321 (336)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhH
Confidence 4578889999999999974 2221 11 22 24677888886 899999999999999999999998 99998876
Q ss_pred hcCCHHHH
Q 018446 270 AVLPDLDI 277 (355)
Q Consensus 270 aiL~~~~L 277 (355)
+++.+-++
T Consensus 322 ~~i~dP~~ 329 (336)
T cd02932 322 ELLRNPYW 329 (336)
T ss_pred HHHhCccH
Confidence 66665443
No 269
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=78.20 E-value=7.9 Score=38.91 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCceEEEEeccC----------------------CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDE----------------------KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~----------------------~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eA 257 (355)
.+.|+..++.|+++|-|=--. .|.....+-|..++++.+++||+.-==|-++.++.++
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 478888889999999982210 1112234566677774358999999999999999999
Q ss_pred HHcCCcchHHHHhcC
Q 018446 258 RTKGADAVLLIAAVL 272 (355)
Q Consensus 258 r~~GADAVLLIaaiL 272 (355)
.++|||+|.+=-++|
T Consensus 280 l~~GAd~v~ig~~~l 294 (352)
T PRK05437 280 LALGADAVGMAGPFL 294 (352)
T ss_pred HHcCCCEEEEhHHHH
Confidence 999999997755554
No 270
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=78.10 E-value=4.4 Score=39.14 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=44.0
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeeccc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKE 246 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKD 246 (355)
++..||+=+-.. ...+..++|+.+++.||+|+.|.+ |.||..+. +++..|.++ +++||+-=+
T Consensus 72 ~~~~viagvg~~--------~t~~ai~~a~~a~~~Gad~v~v~~-P~y~~~~~~~l~~~f~~va~a-~~lPv~iYn 137 (293)
T PRK04147 72 GKVKLIAQVGSV--------NTAEAQELAKYATELGYDAISAVT-PFYYPFSFEEICDYYREIIDS-ADNPMIVYN 137 (293)
T ss_pred CCCCEEecCCCC--------CHHHHHHHHHHHHHcCCCEEEEeC-CcCCCCCHHHHHHHHHHHHHh-CCCCEEEEe
Confidence 456788866221 123678999999999999999887 77888764 456677765 677766443
No 271
>PRK02227 hypothetical protein; Provisional
Probab=77.73 E-value=6.3 Score=38.26 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=74.9
Q ss_pred CCeeccccc----cCHHHH-HHHHHcCCcchHHH---------HhcCCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHH
Q 018446 240 CPLLCKEFI----VDAWQI-YYARTKGADAVLLI---------AAVLPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRV 304 (355)
Q Consensus 240 lPVLrKDFI----IdpyQI-~eAr~~GADAVLLI---------aaiL~~~~L~~L~~~A~~LGLea-LVEVH~~eELerA 304 (355)
++++.-|.- ++|+.| .-++.+|+|+++|= ...|+.++|.+|++.|+++||.+ |---=..+++...
T Consensus 118 Vav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L 197 (238)
T PRK02227 118 VAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPAL 197 (238)
T ss_pred EEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHH
Confidence 578888864 455554 55778999999984 45589999999999999999864 4455567888888
Q ss_pred hccCCCeEEEee-----CCCCCccccChhhHHhhhcccc
Q 018446 305 LGIEGIELIGIN-----NRNLETFEVDNSNTKKLLEGER 338 (355)
Q Consensus 305 l~l~ga~iIGIN-----NRdL~TfevDl~~t~~L~~~~~ 338 (355)
..+ +++++|+- +.| .|-.+|.+...++...++
T Consensus 198 ~~l-~pD~lGfRgavC~g~d-R~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 198 KRL-GPDILGVRGAVCGGGD-RTGRIDPELVAELREALR 234 (238)
T ss_pred Hhc-CCCEEEechhccCCCC-cccccCHHHHHHHHHHhh
Confidence 887 89999985 445 777899998888876543
No 272
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.67 E-value=16 Score=38.67 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC--CCeeccccccCHHHHHHHHHcCCcchHH--------
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--CPLLCKEFIVDAWQIYYARTKGADAVLL-------- 267 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~--lPVLrKDFIIdpyQI~eAr~~GADAVLL-------- 267 (355)
|..+.|+...++|+++|-|-+-+.+-..-.+.++.+|+. .. ++|.. ==+.++-+...+..+|||+|..
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~-~~~~~~V~a-GnV~t~e~a~~li~aGAd~I~vg~g~Gs~c 319 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREK-YGDSVKVGA-GNVVDREGFRYLAEAGADFVKVGIGGGSIC 319 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHh-CCCCceEEe-ccccCHHHHHHHHHcCCCEEEECCCCCcCc
Confidence 456888999999999998765444433348889999874 32 23222 1267899999999999999854
Q ss_pred HHh---cCCHHHHHHHHHHHHH-------cC--CcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446 268 IAA---VLPDLDIRYMTKICKL-------LG--LTALV--EVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 268 Iaa---iL~~~~L~~L~~~A~~-------LG--LeaLV--EVH~~eELerAl~l~ga~iIGI 315 (355)
+.+ --+..++..+.+.+.. .| ...+. -+++--++-+|+.+ ||+.+.+
T Consensus 320 ~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~-GA~~vm~ 380 (502)
T PRK07107 320 ITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM-GADFIML 380 (502)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc-CCCeeee
Confidence 111 1223356666655553 37 45444 37899999999997 8886665
No 273
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=77.49 E-value=7.1 Score=39.55 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHH------HHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFEN------LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed------L~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
+..+......++|+.+|= |=++.. ..-+. |..+++. ...+++-.|. +.-|...|||+|=|
T Consensus 158 ~ll~~l~~al~~Gv~~VQ-LR~K~~--~~~~~~~~a~~L~~l~~~-~~~~lIIND~------vdlAl~~~aDGVHL---- 223 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQ-YRDKTA--DDRQRLEEAKKLKELCHR-YGALFIVNDR------VDIALAVDADGVHL---- 223 (347)
T ss_pred hHHHHHHHHHHcCCCEEE-ECCCCC--CHHHHHHHHHHHHHHHHH-hCCeEEEeCh------HHHHHHcCCCEEEe----
Confidence 455666666678876643 334332 11122 3333332 3566665554 55688899999965
Q ss_pred CCHHHHHHHHHHHHH-cCCcEE--EEeCCHHHHHHHhccCCCeEEEee
Q 018446 272 LPDLDIRYMTKICKL-LGLTAL--VEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 272 L~~~~L~~L~~~A~~-LGLeaL--VEVH~~eELerAl~l~ga~iIGIN 316 (355)
+..++. ...++. +|-..+ +-+||.+|+..|... |++.||+-
T Consensus 224 -gq~dl~--~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~-GaDYI~lG 267 (347)
T PRK02615 224 -GQEDLP--LAVARQLLGPEKIIGRSTTNPEEMAKAIAE-GADYIGVG 267 (347)
T ss_pred -ChhhcC--HHHHHHhcCCCCEEEEecCCHHHHHHHHHc-CCCEEEEC
Confidence 333332 233343 555555 788999999999986 99999974
No 274
>PRK14057 epimerase; Provisional
Probab=77.32 E-value=23 Score=34.61 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC--------CCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--------CPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~--------lPVLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
+|..+.+.|.++||+.|+|-.|..- --...|..+|+.+.. .+=|.=..- .|...++-..-=.|.||++.
T Consensus 86 ~P~~~i~~~~~aGad~It~H~Ea~~--~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~-Tp~e~i~~~l~~vD~VLvMt 162 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAEGDI--HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPA-TPLDVIIPILSDVEVIQLLA 162 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeecccc--CHHHHHHHHHHcCCCcccccccceeEEEECCC-CCHHHHHHHHHhCCEEEEEE
Confidence 7999999999999999999999531 124677888886432 232222222 24444455555688877653
Q ss_pred hc--------CC--HHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEe
Q 018446 270 AV--------LP--DLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 270 ai--------L~--~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGI 315 (355)
-- .+ -+.++++.++-.+.|++.++||. |.+-+.++.++ ||+++-.
T Consensus 163 V~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~a-Gad~~V~ 220 (254)
T PRK14057 163 VNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQ-GIDRVVS 220 (254)
T ss_pred ECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHC-CCCEEEE
Confidence 21 11 13566666777788999999996 57888888886 9987644
No 275
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=77.31 E-value=7 Score=36.86 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHcC-ceEEEEeccCCCCCCCHHHHH------HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGG-AACLSILTDEKYFKGSFENLE------AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~G-AaaISVLTD~~fF~GS~edL~------~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
+..+.++.-.++| ..+|=+- ++.. ..-+.+. .+++. ..+|++-.|. +..|...|||+|=|
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR-~K~l--~~~~~~~~a~~l~~l~~~-~gv~liINd~------~dlA~~~~adGVHL--- 93 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILP-QYGL--DEATFQKQAEKLVPVIQE-AGAAALIAGD------SRIAGRVKADGLHI--- 93 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEe-CCCC--CHHHHHHHHHHHHHHHHH-hCCEEEEeCH------HHHHHHhCCCEEEE---
Confidence 4556666777788 5666543 4442 1122222 22221 3578777764 55688999999844
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEe---CCHHHHHHHhccCCCeEEEeeCC
Q 018446 271 VLPDLDIRYMTKICKLLGLTALVEV---HDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 271 iL~~~~L~~L~~~A~~LGLeaLVEV---H~~eELerAl~l~ga~iIGINNR 318 (355)
+.+++ .+.+.-+.+|-..+|-+ |+.+++..|.+. |++.||+---
T Consensus 94 --g~~d~-~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~-gaDYv~~Gpv 140 (221)
T PRK06512 94 --EGNLA-ALAEAIEKHAPKMIVGFGNLRDRHGAMEIGEL-RPDYLFFGKL 140 (221)
T ss_pred --Ccccc-CHHHHHHhcCCCCEEEecCCCCHHHHHHhhhc-CCCEEEECCC
Confidence 43221 23344446777778885 789999998876 9999999764
No 276
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=77.28 E-value=3.9 Score=39.73 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc--CCHHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV--LPDLD 276 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai--L~~~~ 276 (355)
..+....|.++|... |++|.+..+...+.. ++.| +.+++.+|-|+|=+-... |+.++
T Consensus 56 l~eki~l~~~~gV~v--------~~GGtl~E~a~~q~~------------~~~y-l~~~k~lGf~~IEiSdGti~l~~~~ 114 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYV--------YPGGTLFEVAYQQGK------------FDEY-LEECKELGFDAIEISDGTIDLPEEE 114 (244)
T ss_dssp HHHHHHHHHCTT-EE--------EE-HHHHHHHHHTT-------------HHHH-HHHHHHCT-SEEEE--SSS---HHH
T ss_pred HHHHHHHHHHcCCeE--------eCCcHHHHHHHhcCh------------HHHH-HHHHHHcCCCEEEecCCceeCCHHH
Confidence 345667888889876 899999888877542 2444 678999999998876665 56788
Q ss_pred HHHHHHHHHHcCCcEEEEeCCH--------------HHHHHHhccCCCeEEEeeCC-----CCCccc--cChhhHHhhhc
Q 018446 277 IRYMTKICKLLGLTALVEVHDE--------------REMDRVLGIEGIELIGINNR-----NLETFE--VDNSNTKKLLE 335 (355)
Q Consensus 277 L~~L~~~A~~LGLeaLVEVH~~--------------eELerAl~l~ga~iIGINNR-----dL~Tfe--vDl~~t~~L~~ 335 (355)
..++++.+++.|+.++-||... +.+++.|++ ||..|-|..| .+-.-. +..+...+|+.
T Consensus 115 r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeA-GA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~ 193 (244)
T PF02679_consen 115 RLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEA-GADKVIIEARESGKGGIYDNDGEVRTDLVEKIIE 193 (244)
T ss_dssp HHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHH-TECEEEE--TTT--STTB-TTS-B-HHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHC-CCCEEEEeeeccCCCCccCCCCCccHHHHHHHHH
Confidence 9999999999999999999753 345667786 9999999999 544332 44444566665
Q ss_pred cc
Q 018446 336 GE 337 (355)
Q Consensus 336 ~~ 337 (355)
.+
T Consensus 194 ~~ 195 (244)
T PF02679_consen 194 RL 195 (244)
T ss_dssp TS
T ss_pred hC
Confidence 43
No 277
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=77.23 E-value=2.2 Score=39.99 Aligned_cols=143 Identities=21% Similarity=0.173 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHH---HHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 194 ~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL---~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
...-||.++|+.|.+.||.-|-|.==..-+.|...++ ..+++. +.+||---==|-+.-++.+...+|||.|.+-..
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~-~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKE-TGIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHH-SSSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhc-CCccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 3456999999999999999988753222335655444 455554 678887666677888899999999999888666
Q ss_pred cCC-HHHHHHHHHHHHHcCC-------cEEEE-------------eCCHHHHHHHhccCCCeEEEeeCCCCC-cc-ccCh
Q 018446 271 VLP-DLDIRYMTKICKLLGL-------TALVE-------------VHDEREMDRVLGIEGIELIGINNRNLE-TF-EVDN 327 (355)
Q Consensus 271 iL~-~~~L~~L~~~A~~LGL-------eaLVE-------------VH~~eELerAl~l~ga~iIGINNRdL~-Tf-evDl 327 (355)
.+. ++-+++ +++.+|= ++--. +.-.+-++++.+. |+.=|=+++=+-. |. -.|+
T Consensus 105 ~~~~~~~l~~---~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~ 180 (229)
T PF00977_consen 105 ALEDPELLEE---LAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDL 180 (229)
T ss_dssp HHHCCHHHHH---HHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--H
T ss_pred HhhchhHHHH---HHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCH
Confidence 664 344444 4444443 22211 2222334555554 7765666655444 33 3777
Q ss_pred hhHHhhhccccccc
Q 018446 328 SNTKKLLEGERGEI 341 (355)
Q Consensus 328 ~~t~~L~~~~~~~~ 341 (355)
+...++......+.
T Consensus 181 ~~~~~l~~~~~~~v 194 (229)
T PF00977_consen 181 ELLKQLAEAVNIPV 194 (229)
T ss_dssp HHHHHHHHHHSSEE
T ss_pred HHHHHHHHHcCCCE
Confidence 77777765433333
No 278
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=77.11 E-value=15 Score=35.72 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=27.7
Q ss_pred CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
+-..|||||.+|+.+|++. |+++|++.|-...
T Consensus 184 ~~IgVev~t~eea~~A~~~-gaD~I~ld~~~p~ 215 (272)
T cd01573 184 KKIVVEVDSLEEALAAAEA-GADILQLDKFSPE 215 (272)
T ss_pred CeEEEEcCCHHHHHHHHHc-CCCEEEECCCCHH
Confidence 5678999999999999986 9999999986543
No 279
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=77.07 E-value=10 Score=38.95 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHcCceEEEEeccC----CCCCCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 197 FDPVEIARSYEKGGAACLSILTDE----KYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~----~fF~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
.++. -|+.-.+.||++|-|=--. ..-...++-|..++++ + ++||+.-==|-.+..|..|.++|||+|.+=-.
T Consensus 262 ~~~~-dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~-~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~ 339 (383)
T cd03332 262 LHPD-DARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEA-VGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRP 339 (383)
T ss_pred CCHH-HHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHH-hcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHH
Confidence 3443 4555556799998874110 1122357888888875 4 59999998999999999999999999987544
Q ss_pred cC
Q 018446 271 VL 272 (355)
Q Consensus 271 iL 272 (355)
+|
T Consensus 340 ~l 341 (383)
T cd03332 340 YA 341 (383)
T ss_pred HH
Confidence 44
No 280
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=77.02 E-value=66 Score=30.31 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=46.6
Q ss_pred HHHHHHHcCCcchHHHHhc-C----CH-------HHHHHHHHHHHHcCCcEEEEeC------CHHHHHHHhccCCCeEEE
Q 018446 253 QIYYARTKGADAVLLIAAV-L----PD-------LDIRYMTKICKLLGLTALVEVH------DEREMDRVLGIEGIELIG 314 (355)
Q Consensus 253 QI~eAr~~GADAVLLIaai-L----~~-------~~L~~L~~~A~~LGLeaLVEVH------~~eELerAl~l~ga~iIG 314 (355)
.|..|+.+||..|.+-..- . .. +.|+++.++|.+.|+...+|.| +..++.+.++.-+.+-+|
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~~~v~ 178 (279)
T TIGR00542 99 AIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDHYLNSPWFT 178 (279)
T ss_pred HHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHHHcCCCceE
Confidence 4555666777665432110 0 01 4678899999999999999975 555655554322445677
Q ss_pred ee--CCCCCccccChhhHHhh
Q 018446 315 IN--NRNLETFEVDNSNTKKL 333 (355)
Q Consensus 315 IN--NRdL~TfevDl~~t~~L 333 (355)
+| --++..+.-|+....++
T Consensus 179 ~~~D~~h~~~~~~~~~~~i~~ 199 (279)
T TIGR00542 179 LYPDIGNLSAWDNDVQMELQL 199 (279)
T ss_pred EEeCcChhhhccCCHHHHHHH
Confidence 75 12222333455444443
No 281
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=76.78 E-value=34 Score=34.28 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHcCceEEEEecc-------CCC-C--CCCHHHHHHHHhcCCCC--C-eeccccccCHHHHHHHHHcCCcc
Q 018446 198 DPVEIARSYEKGGAACLSILTD-------EKY-F--KGSFENLEAVRSAGVKC--P-LLCKEFIVDAWQIYYARTKGADA 264 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD-------~~f-F--~GS~edL~~VR~a~v~l--P-VLrKDFIIdpyQI~eAr~~GADA 264 (355)
+..++++.+.++|...|=|=-- -.| | ....+++..+++...+. = +|..- +-+.-.+..|..+|+|.
T Consensus 25 ~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg-~~~~~dl~~a~~~gvd~ 103 (333)
T TIGR03217 25 QVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG-IGTVHDLKAAYDAGART 103 (333)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC-ccCHHHHHHHHHCCCCE
Confidence 3457888888999888876310 011 1 13567777776531111 1 12111 11345688899999998
Q ss_pred hHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHH----HHhccCCCeEEEeeCCCCCccc-cChhhHHhhh
Q 018446 265 VLLIAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMD----RVLGIEGIELIGINNRNLETFE-VDNSNTKKLL 334 (355)
Q Consensus 265 VLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELe----rAl~l~ga~iIGINNRdL~Tfe-vDl~~t~~L~ 334 (355)
|=+....=..+.....+++++++|+++.+-. ++.+++. .+.+. |++.|.|-. |+- ..++...++.
T Consensus 104 iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~-Ga~~i~i~D----T~G~~~P~~v~~~v 178 (333)
T TIGR03217 104 VRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY-GADCVYIVD----SAGAMLPDDVRDRV 178 (333)
T ss_pred EEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc-CCCEEEEcc----CCCCCCHHHHHHHH
Confidence 7755544444567889999999999986443 4555554 33343 788877753 222 3345555555
Q ss_pred cc
Q 018446 335 EG 336 (355)
Q Consensus 335 ~~ 336 (355)
..
T Consensus 179 ~~ 180 (333)
T TIGR03217 179 RA 180 (333)
T ss_pred HH
Confidence 44
No 282
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=76.75 E-value=6.1 Score=36.08 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=47.8
Q ss_pred CCHHHHHHHHhcCCCCCeecc--ccc-cCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE
Q 018446 225 GSFENLEAVRSAGVKCPLLCK--EFI-VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV 293 (355)
Q Consensus 225 GS~edL~~VR~a~v~lPVLrK--DFI-IdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV 293 (355)
-+++.+..+|+. ..+|+=.| |.. -..|++.++..+|||+|.+-+..- .+.+..+++.+++.|+.+++
T Consensus 42 ~G~~~v~~ir~~-~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~g~~~~v 111 (215)
T PRK13813 42 SGLGIIEELKRY-APVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAESGGKVFV 111 (215)
T ss_pred hCHHHHHHHHhc-CCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhcCCeEEE
Confidence 457889999985 44442122 222 125566778889999988877643 55799999999999999977
No 283
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=76.72 E-value=4.1 Score=36.15 Aligned_cols=38 Identities=21% Similarity=0.485 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEE
Q 018446 275 LDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iI 313 (355)
.-++.++.+|+++|+..++| |.|.++++.+..+ |++.+
T Consensus 190 ~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~-G~~~~ 228 (236)
T PF00563_consen 190 SLLQSLINLAKSLGIKVIAEGVESEEQLELLKEL-GVDYI 228 (236)
T ss_dssp HHHHHHHHHHHHTT-EEEEECE-SHHHHHHHHHT-TESEE
T ss_pred HHHHHHHHHhhccccccceeecCCHHHHHHHHHc-CCCEE
Confidence 45777899999999999998 9999999999987 87653
No 284
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=76.69 E-value=6.2 Score=37.75 Aligned_cols=63 Identities=27% Similarity=0.408 Sum_probs=46.6
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeecccc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKEF 247 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKDF 247 (355)
++..||+=+-..|- .+..++|+.+++.||+++.|++ |.||..+. ++.+.|.++ +++||+--++
T Consensus 69 ~~~~vi~gv~~~st--------~~~i~~a~~a~~~Gad~v~v~~-P~~~~~s~~~l~~y~~~ia~~-~~~pi~iYn~ 135 (289)
T PF00701_consen 69 GRVPVIAGVGANST--------EEAIELARHAQDAGADAVLVIP-PYYFKPSQEELIDYFRAIADA-TDLPIIIYNN 135 (289)
T ss_dssp TSSEEEEEEESSSH--------HHHHHHHHHHHHTT-SEEEEEE-STSSSCCHHHHHHHHHHHHHH-SSSEEEEEEB
T ss_pred CceEEEecCcchhH--------HHHHHHHHHHhhcCceEEEEec-cccccchhhHHHHHHHHHHhh-cCCCEEEEEC
Confidence 45679988744432 3678999999999999999977 78888885 555677765 7888775543
No 285
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=76.61 E-value=27 Score=32.98 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC-CeeccccccCHHHHHHHHHcCCcchHHHHh------
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAA------ 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l-PVLrKDFIIdpyQI~eAr~~GADAVLLIaa------ 270 (355)
+|..+.+.|.++||+.|+|-.|..- --.+.|..+|+.+... -.|..+ .|...++-...=.|.||++.-
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~--~~~~~l~~ik~~g~k~GlalnP~---Tp~~~i~~~l~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASE--HVDRTLQLIKEHGCQAGVVLNPA---TPLHHLEYIMDKVDLILLMSVNPGFGG 143 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcc--cHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 7999999999999999999999541 1247778888875432 233333 355555666667888887421
Q ss_pred --cC--CHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEee
Q 018446 271 --VL--PDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 271 --iL--~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGIN 316 (355)
.+ +-+.++++.++....|++..+||- |.+.+..+.++ ||+++-+=
T Consensus 144 q~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~a-GAd~vVvG 195 (220)
T PRK08883 144 QSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEA-GADMFVAG 195 (220)
T ss_pred ceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHc-CCCEEEEe
Confidence 12 123566666666677888889884 58899988886 89877553
No 286
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=76.44 E-value=1.3e+02 Score=33.38 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L 277 (355)
-..++|+.+.++|+..+.| .+++.-..+|+++.+.|||.=-. + +.++.++..++ ++..+=+.+++
T Consensus 498 G~~~va~~l~~~G~~~f~V--------a~l~Ea~~lr~~g~~~~Ilvl~~-~-~~~~~~~~~~~-----l~~~i~s~~~l 562 (822)
T PRK11930 498 GSYEIAKLLQEHRVDYLAV--------AYADEGVSLRKAGITLPIMVMNP-E-PTSFDTIIDYK-----LEPEIYSFRLL 562 (822)
T ss_pred CHHHHHHHHHHCCCCEEEE--------eeHHHHHHHHhcCCCCCEEEEeC-C-HHHHHHHHHcC-----CEEEECCHHHH
Confidence 5678999999999998776 45777888998777888776533 2 55666666554 44555577889
Q ss_pred HHHHHHHHHcC---CcEEEEeCC--------HHHHH---HH-hccCCCeEEEee
Q 018446 278 RYMTKICKLLG---LTALVEVHD--------EREMD---RV-LGIEGIELIGIN 316 (355)
Q Consensus 278 ~~L~~~A~~LG---LeaLVEVH~--------~eELe---rA-l~l~ga~iIGIN 316 (355)
+.|.++|.+.| +.+.+.|.+ .+|+. +. ..+.+.++.||-
T Consensus 563 ~~l~~~~~~~~~~~~~v~l~vDtGm~R~G~~~~~~~~~~~~i~~~~~l~~~Gi~ 616 (822)
T PRK11930 563 DAFIKAAQKKGITGYPIHIKIDTGMHRLGFEPEDIPELARRLKKQPALKVRSVF 616 (822)
T ss_pred HHHHHHHHHcCCCceEEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999998876 567777753 23332 22 233467889983
No 287
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=76.40 E-value=27 Score=34.40 Aligned_cols=142 Identities=12% Similarity=0.152 Sum_probs=88.9
Q ss_pred CCCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEe--ccC-------CCCCC--
Q 018446 157 APPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL--TDE-------KYFKG-- 225 (355)
Q Consensus 157 ~pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVL--TD~-------~fF~G-- 225 (355)
+..++.|.+++++.. .+ ..|+.=.|..|-- | .+++--...|...--.+ .|. ..|-|
T Consensus 106 AT~T~~~V~~~~~~~---~~-~~I~~TRKT~Pg~---R------~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~ 172 (277)
T TIGR01334 106 ATYTHKMVTLAKKIS---PM-AVVACTRKAIPLT---R------PLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDN 172 (277)
T ss_pred HHHHHHHHHHHHhcC---CC-CEEEecCCCCCCh---h------HHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCc
Confidence 345788999997642 22 3555555556642 1 22222224344443333 555 22334
Q ss_pred -CH-HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHH
Q 018446 226 -SF-ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DERE 300 (355)
Q Consensus 226 -S~-edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eE 300 (355)
++ +-+..+|+.....+| .=+. -+.-|..+|..+|||.|+|= =++++++++.++..++.+...++|+. |++.
T Consensus 173 ~~i~~av~~~r~~~~~~kI-eVEv-~tleea~ea~~~GaDiI~lD--n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~n 248 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKI-TVEA-DTIEQALTVLQASPDILQLD--KFTPQQLHHLHERLKFFDHIPTLAAAGGINPEN 248 (277)
T ss_pred ccHHHHHHHHHHhCCCCCE-EEEC-CCHHHHHHHHHcCcCEEEEC--CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHH
Confidence 33 446666653212221 1111 27789999999999999885 58899999999988888889999997 6777
Q ss_pred HHHHhccCCCeEEEee
Q 018446 301 MDRVLGIEGIELIGIN 316 (355)
Q Consensus 301 LerAl~l~ga~iIGIN 316 (355)
+...... |+++|-+-
T Consensus 249 i~~ya~~-GvD~is~g 263 (277)
T TIGR01334 249 IADYIEA-GIDLFITS 263 (277)
T ss_pred HHHHHhc-CCCEEEeC
Confidence 7776775 88888553
No 288
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.25 E-value=9.4 Score=36.49 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=81.5
Q ss_pred CccHHHHHHhhhhcCCCceEEeEeeecCC-CCCCCC-CCCCHHHHHHHHHHcCceEE---EEeccCCCCCCCHHHHHHHH
Q 018446 160 ARDFIGALMAANQRTGLPALIAEVKKASP-SRGILR-EDFDPVEIARSYEKGGAACL---SILTDEKYFKGSFENLEAVR 234 (355)
Q Consensus 160 ~rdF~~aL~~~~~~~g~~aVIAEvKRaSP-SkG~I~-~~~Dp~~iA~~Ye~~GAaaI---SVLTD~~fF~GS~edL~~VR 234 (355)
..+|...+.+ . ..+..+=.++|+-.+ ++|+.. .+.+|.++++.|++.|+..| +|-.|-..-+-+++.++.++
T Consensus 108 ~p~~l~~~~~-~--~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~ 184 (241)
T PRK14114 108 DPSFLKFLKE-I--DVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIA 184 (241)
T ss_pred CHHHHHHHHH-h--CCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHH
Confidence 3457766643 2 234445556655321 345543 57899999999999998765 45577777888899999999
Q ss_pred hcCCCCCeeccccccCHHHHHHHHHc-----C-CcchHHHHhcCCHH-HHHHHHHH
Q 018446 235 SAGVKCPLLCKEFIVDAWQIYYARTK-----G-ADAVLLIAAVLPDL-DIRYMTKI 283 (355)
Q Consensus 235 ~a~v~lPVLrKDFIIdpyQI~eAr~~-----G-ADAVLLIaaiL~~~-~L~~L~~~ 283 (355)
+. +++||+.-==+=+.--|.++..+ | ++++++=-++.+.. .++++.++
T Consensus 185 ~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~~ 239 (241)
T PRK14114 185 IE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_pred HH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHHh
Confidence 86 89999987666666667777775 6 99988766665431 34444443
No 289
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.21 E-value=57 Score=32.33 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=75.9
Q ss_pred CCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHH----HHHHHHHHHHHcCCcEEEEe-----------------
Q 018446 238 VKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVEV----------------- 295 (355)
Q Consensus 238 v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~----~L~~L~~~A~~LGLeaLVEV----------------- 295 (355)
.++| .|.=|=.-+.-.|.+|..+|.+.|..=.+-|+.+ ..++..++|+.+|+.+=.|+
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~ 152 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCK 152 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccccccc
Confidence 4678 5777888787799999999999999999999974 46778899999998742332
Q ss_pred CCHHHHHHHhccCCCeEEEeeCCCCCccc----cChhhHHhhhcc
Q 018446 296 HDEREMDRVLGIEGIELIGINNRNLETFE----VDNSNTKKLLEG 336 (355)
Q Consensus 296 H~~eELerAl~l~ga~iIGINNRdL~Tfe----vDl~~t~~L~~~ 336 (355)
.+.+|+.+.....|++.+-|..-+.+..- +|++..++|...
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV 197 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh
Confidence 46777777665348999888887766654 667777777654
No 290
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=75.97 E-value=9.4 Score=38.04 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=68.1
Q ss_pred eEEeEeeecCCCCCCCCCCC---CHHHHHHHHHHcC-ceEEEEec----c---------CCCCCCC--HHHHHHHHhcCC
Q 018446 178 ALIAEVKKASPSRGILREDF---DPVEIARSYEKGG-AACLSILT----D---------EKYFKGS--FENLEAVRSAGV 238 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~---Dp~~iA~~Ye~~G-AaaISVLT----D---------~~fF~GS--~edL~~VR~a~v 238 (355)
-++.-+| -||... +.... |..++|+.+++.| ++.|.|-. . +.|+... .+....++++ +
T Consensus 208 ~~~v~iR-l~~~~~-~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~ 284 (343)
T cd04734 208 DFIVGIR-ISGDED-TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-V 284 (343)
T ss_pred CCeEEEE-eehhhc-cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-c
Confidence 3555554 455432 12222 4568899999998 89999831 1 1233332 5677888886 8
Q ss_pred CCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCHHHH
Q 018446 239 KCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPDLDI 277 (355)
Q Consensus 239 ~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~~~L 277 (355)
++||+.--=|.++-++.++...| ||.|.+==.+|.+-++
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l 324 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHL 324 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccH
Confidence 99999999889999999999876 9999987777766554
No 291
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=75.59 E-value=8.4 Score=38.71 Aligned_cols=95 Identities=29% Similarity=0.340 Sum_probs=69.1
Q ss_pred CCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEecc-CCCCCC----C---HHHH
Q 018446 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD-EKYFKG----S---FENL 230 (355)
Q Consensus 159 p~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD-~~fF~G----S---~edL 230 (355)
++.+|.+.+... | ..|++-+ ++ +..|+.+++.|+++|-+--- ---..| + +.-+
T Consensus 115 ~~~~~i~~~~~~----g-~~v~~~v----~~----------~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv 175 (336)
T COG2070 115 PPAEFVARLKAA----G-IKVIHSV----IT----------VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALV 175 (336)
T ss_pred CcHHHHHHHHHc----C-CeEEEEe----CC----------HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHH
Confidence 577888888763 2 2344444 22 36899999999998765432 222223 2 4566
Q ss_pred HHHHhcCCC-CCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 231 EAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 231 ~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
..|+++ ++ +||+.===|-|+.+|.-|..+|||+|..=.+.|.
T Consensus 176 ~ev~~~-~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 176 PEVVDA-VDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred HHHHHH-hcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 777876 78 9999999999999999999999999998666653
No 292
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.56 E-value=14 Score=35.17 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
||.++|+.|.+.||.-|-|.==...+ |. ++.++++++. ...|+---==|=+.-|+.+....|||-|.+-...+.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~-~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKI-GFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 99999999999999887765322223 43 3445555542 2247443333345688999999999999875555443
Q ss_pred HHHHHHHHHHHHcCCc
Q 018446 275 LDIRYMTKICKLLGLT 290 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLe 290 (355)
. +-+-+.++.+|=+
T Consensus 109 p--~~~~~~~~~~g~~ 122 (232)
T PRK13586 109 F--NLFHDIVREIGSN 122 (232)
T ss_pred H--HHHHHHHHHhCCC
Confidence 2 2334556666533
No 293
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=75.47 E-value=23 Score=34.31 Aligned_cols=147 Identities=21% Similarity=0.215 Sum_probs=94.6
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-----eccCCCCCC----CHHHHHHHHhcCCCCCeecc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCK 245 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-----LTD~~fF~G----S~edL~~VR~a~v~lPVLrK 245 (355)
+++.+||+ | +.+...--..++|+...+.|+...-. .|-+.-|.| .+..|.++++. ..+|++.-
T Consensus 24 ~~~~~IAG-----p--c~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~-~Gl~~~t~ 95 (260)
T TIGR01361 24 GSPIVIAG-----P--CSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADE-HGLPVVTE 95 (260)
T ss_pred CcEEEEEe-----C--CccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHH-hCCCEEEe
Confidence 45778998 4 33433223346666666655553221 122344666 35566666664 78999884
Q ss_pred ccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---CCCeEEEeeCCC
Q 018446 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRN 319 (355)
Q Consensus 246 DFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l---~ga~iIGINNRd 319 (355)
+.|+.|+..+..+ +|.+-+=+.-+.. ..|++.+.+.|.-+++.-. +.+|++.|++. .|.+=|.+-.|.
T Consensus 96 --~~d~~~~~~l~~~-~d~lkI~s~~~~n---~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG 169 (260)
T TIGR01361 96 --VMDPRDVEIVAEY-ADILQIGARNMQN---FELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERG 169 (260)
T ss_pred --eCChhhHHHHHhh-CCEEEECcccccC---HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 6799999999888 8865444444444 3478888999999999987 89999888653 254434455554
Q ss_pred CCcc------ccChhhHHhhhc
Q 018446 320 LETF------EVDNSNTKKLLE 335 (355)
Q Consensus 320 L~Tf------evDl~~t~~L~~ 335 (355)
..|| .+|+..-..|..
T Consensus 170 ~s~y~~~~~~~~dl~~i~~lk~ 191 (260)
T TIGR01361 170 IRTFEKATRNTLDLSAVPVLKK 191 (260)
T ss_pred CCCCCCCCcCCcCHHHHHHHHH
Confidence 4444 788877776654
No 294
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=75.43 E-value=48 Score=30.74 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=74.5
Q ss_pred CceEEeEeeecCCCCCCCCCCCCH-HHHHHHHHHcCceEEEEeccCCCCCC-CHHHHHHHHhcCCCCCe--eccccc-cC
Q 018446 176 LPALIAEVKKASPSRGILREDFDP-VEIARSYEKGGAACLSILTDEKYFKG-SFENLEAVRSAGVKCPL--LCKEFI-VD 250 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp-~~iA~~Ye~~GAaaISVLTD~~fF~G-S~edL~~VR~a~v~lPV--LrKDFI-Id 250 (355)
+..+..|+|--....+......+. ..+++.+.+.|.. +.-.|+. +.+.|..+|+...++|+ |..+.. .+
T Consensus 126 ~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~ 199 (263)
T cd08567 126 KVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGLE------DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTLGN 199 (263)
T ss_pred CceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCCC------CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcccC
Confidence 357999999533221100000111 3556666666642 2222222 36788888875445554 332221 12
Q ss_pred HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEeeC
Q 018446 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 251 pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGINN 317 (355)
. ...++..|++.+-.-...++ ..+++.+++.|+.+.| -|++.+++++++.. |++.|--|.
T Consensus 200 ~--~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~G~~v~vwtvn~~~~~~~~~~~-Gvdgi~TD~ 260 (263)
T cd08567 200 L--PRAAKKLGADIWSPYFTLVT----KELVDEAHALGLKVVPWTVNDPEDMARLIDL-GVDGIITDY 260 (263)
T ss_pred H--HHHHHHhCCcEEecchhhcC----HHHHHHHHHCCCEEEEecCCCHHHHHHHHHc-CCCEEEcCC
Confidence 1 23456778876644333344 3688999999999886 45678999999986 888776554
No 295
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=75.43 E-value=15 Score=32.67 Aligned_cols=108 Identities=15% Similarity=0.266 Sum_probs=68.8
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc-cCHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI-VDAWQIYY 256 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI-IdpyQI~e 256 (355)
.++.|+.-.... ..........+.|.+.|.. |++ ..|+++...+..+... .-|+| +|.--+..
T Consensus 117 ~l~iei~e~~~~----~~~~~~~~~~~~l~~~G~~-l~l----d~~g~~~~~~~~l~~~-------~~d~iKld~~~~~~ 180 (240)
T cd01948 117 RLVLEITESALI----DDLEEALATLRRLRALGVR-IAL----DDFGTGYSSLSYLKRL-------PVDYLKIDRSFVRD 180 (240)
T ss_pred HEEEEEecchhh----CCHHHHHHHHHHHHHCCCe-EEE----eCCCCcHhhHHHHHhC-------CCCEEEECHHHHHh
Confidence 489999655442 2222356777888888854 332 2577787777777652 12444 34433322
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeE
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIEL 312 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~i 312 (355)
...-. -....++.+...|+.+|+.+++| |.|.++++.+..+ |++.
T Consensus 181 ~~~~~----------~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~~~~~-gi~~ 226 (240)
T cd01948 181 IETDP----------EDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLREL-GCDY 226 (240)
T ss_pred HhcCh----------hhHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHc-CCCe
Confidence 21100 01345778899999999999987 7999999999887 7754
No 296
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=74.81 E-value=21 Score=35.01 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEEeccCCCCCCCHHHHHHHHhc----C-CCCCeeccccccCHHHHHHHHHcCCcchHHHH-------hcCCHHHHHHH
Q 018446 213 CLSILTDEKYFKGSFENLEAVRSA----G-VKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-------AVLPDLDIRYM 280 (355)
Q Consensus 213 aISVLTD~~fF~GS~edL~~VR~a----~-v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa-------aiL~~~~L~~L 280 (355)
=|=|+.|++|-..+...+-+..+. + ..+|+...| +..-.....+|+|+|.=.. .+..++-++
T Consensus 95 KlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd----~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~-- 168 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDD----PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR-- 168 (248)
T ss_pred EEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH--
Confidence 345666666665555443333221 1 122333332 2233334445777772211 223343333
Q ss_pred HHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEeeCC
Q 018446 281 TKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 281 ~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGINNR 318 (355)
.+....+.-+++| +++.+|+.+|+++ |++-++||.=
T Consensus 169 -~I~e~~~vpVI~egGI~tpeda~~Amel-GAdgVlV~SA 206 (248)
T cd04728 169 -IIIERADVPVIVDAGIGTPSDAAQAMEL-GADAVLLNTA 206 (248)
T ss_pred -HHHHhCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEChH
Confidence 2333368889998 8999999999998 9999999864
No 297
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=74.76 E-value=16 Score=39.06 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHcCceEE---EEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHH-cCCcchHHHHh
Q 018446 195 EDFDPVEIARSYEKGGAACL---SILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAA 270 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaI---SVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~-~GADAVLLIaa 270 (355)
.+.|+.++|+.+++.||..| ||-.|-.--+=+++.++.++++ +++||+.--=+=.+--+.++.. .||||+| .++
T Consensus 436 ~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~-aa~ 513 (538)
T PLN02617 436 RPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDA-VTIPVIASSGAGTPEHFSDVFSKTNASAAL-AAG 513 (538)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHhcCCccEEE-EEe
Confidence 47899999999999999876 4555655556678888999986 9999998887777777877776 6789954 445
Q ss_pred cCC--HHHHHHHHHHHHHcCCc
Q 018446 271 VLP--DLDIRYMTKICKLLGLT 290 (355)
Q Consensus 271 iL~--~~~L~~L~~~A~~LGLe 290 (355)
++- .-.+.++-++.+.-|+.
T Consensus 514 ~fh~~~~~~~~~k~~l~~~gi~ 535 (538)
T PLN02617 514 IFHRKEVPISSVKEHLLEEGIE 535 (538)
T ss_pred eeccCCCCHHHHHHHHHHCCCc
Confidence 532 22455555666666654
No 298
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.21 E-value=8.2 Score=38.29 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=90.5
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCce---EEE--EeccCCC--CCCCH-HH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA---CLS--ILTDEKY--FKGSF-EN 229 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAa---aIS--VLTD~~f--F~GS~-ed 229 (355)
..++.|.+++.+ ....|+.=.|..|-- | +.+.-..+.-||.. .+| ||--.+| |-|++ +-
T Consensus 123 T~t~~~v~~~~~------~~~~i~~TRKT~Pg~---R----~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~G~i~~a 189 (289)
T PRK07896 123 TATAAWVDAVAG------TKAKIRDTRKTLPGL---R----ALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVAA 189 (289)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCCcc---h----HHHHHHHHhCCCccccCCCcceeeecHHHHHHhCcHHHH
Confidence 345678877732 236888888888842 2 22222244444332 222 4444433 23444 66
Q ss_pred HHHHHhcCCCCC--eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHH
Q 018446 230 LEAVRSAGVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV 304 (355)
Q Consensus 230 L~~VR~a~v~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerA 304 (355)
++.+|+.....| |-+. +.-|..+|..+|||.|+|= =++++++++.++..+..+-.+++|+. |++-+...
T Consensus 190 i~~~r~~~~~~kIeVEv~----tl~ea~eal~~gaDiI~LD--nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~y 263 (289)
T PRK07896 190 LRAVRAAAPDLPCEVEVD----SLEQLDEVLAEGAELVLLD--NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAY 263 (289)
T ss_pred HHHHHHhCCCCCEEEEcC----CHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHH
Confidence 777776312222 3332 4569999999999999874 56688999999988888889999997 67777776
Q ss_pred hccCCCeEEEeeC
Q 018446 305 LGIEGIELIGINN 317 (355)
Q Consensus 305 l~l~ga~iIGINN 317 (355)
... |+++|++-.
T Consensus 264 A~t-GvD~Is~ga 275 (289)
T PRK07896 264 AET-GVDYLAVGA 275 (289)
T ss_pred Hhc-CCCEEEeCh
Confidence 665 999998743
No 299
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=74.21 E-value=69 Score=30.52 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=73.9
Q ss_pred CceEEeEeeecCCCCCCCCCCC-----CH----HHHHHHHHHcCceEEEEeccCCCCCC-CHHHHHHHHhcCCCCCe--e
Q 018446 176 LPALIAEVKKASPSRGILREDF-----DP----VEIARSYEKGGAACLSILTDEKYFKG-SFENLEAVRSAGVKCPL--L 243 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~-----Dp----~~iA~~Ye~~GAaaISVLTD~~fF~G-S~edL~~VR~a~v~lPV--L 243 (355)
...+..|+|-.+...+. .... +. ..+.+...+.|. .++-.|.. +.+.|..+|.....+|+ |
T Consensus 121 ~~~l~IEiK~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~~~~------~~~vi~sSF~~~~l~~~~~~~p~~~~~~l 193 (286)
T cd08606 121 SVGFNIELKYPMLHEAE-EEEVAPVAIELNAFVDTVLEKVFDYGA------GRNIIFSSFTPDICILLSLKQPGYPVLFL 193 (286)
T ss_pred ccceEEEEecCCcchhh-hcccccchhHHHHHHHHHHHHHHhcCC------CCceEEEcCCHHHHHHHHhhCcCCCEEEE
Confidence 35689999943222211 1110 01 134455555553 33334444 57778888775445663 3
Q ss_pred ccccc-----cC----HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE---EeCCHHHHHHHhccCCCe
Q 018446 244 CKEFI-----VD----AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV---EVHDEREMDRVLGIEGIE 311 (355)
Q Consensus 244 rKDFI-----Id----pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV---EVH~~eELerAl~l~ga~ 311 (355)
...-. +. ...+..|+..|++++.+-...+. --..+++.++..|+.+.+ .+.+.+++++.+++ |++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l~~~-GVd 270 (286)
T cd08606 194 TEAGKAPDMDVRAASLQEAIRFAKQWNLLGLVSAAEPLV--MCPRLIQVVKRSGLVCVSYGVLNNDPENAKTQVKA-GVD 270 (286)
T ss_pred eCCCCCccCCchhhcHHHHHHHHHHCCCeEEEechHHhh--hChHHHHHHHHCCcEEEEECCccCCHHHHHHHHHc-CCC
Confidence 22110 00 11235667788877643222111 114689999999999997 45899999999987 776
Q ss_pred EEEee
Q 018446 312 LIGIN 316 (355)
Q Consensus 312 iIGIN 316 (355)
-|--|
T Consensus 271 gIiTD 275 (286)
T cd08606 271 AVIVD 275 (286)
T ss_pred EEEEC
Confidence 65433
No 300
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=74.00 E-value=34 Score=32.85 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCC-CC--eeccccccCHHHHHHHHHcCCcchHHHHhc--
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK-CP--LLCKEFIVDAWQIYYARTKGADAVLLIAAV-- 271 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~-lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaai-- 271 (355)
.+|..+.+.|.++||+.|++-.|... .-.+.|..+|+.+.. .+ .|..+ .|...++-..--.|.||++.--
T Consensus 78 ~~P~~~i~~~~~aGad~It~H~Ea~~--~~~~~l~~Ik~~g~~~kaGlalnP~---Tp~~~i~~~l~~vD~VLiMtV~PG 152 (228)
T PRK08091 78 RDQFEVAKACVAAGADIVTLQVEQTH--DLALTIEWLAKQKTTVLIGLCLCPE---TPISLLEPYLDQIDLIQILTLDPR 152 (228)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCcc--cHHHHHHHHHHCCCCceEEEEECCC---CCHHHHHHHHhhcCEEEEEEECCC
Confidence 37999999999999999999999542 234778888886430 22 23333 2334444555568888775421
Q ss_pred ------CC--HHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEe
Q 018446 272 ------LP--DLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 272 ------L~--~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGI 315 (355)
.+ -+.++++.++-.+.|++.++||. |.+-+.++.++ ||+++-.
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~a-GaD~~V~ 206 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQH-QIDWVVS 206 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHC-CCCEEEE
Confidence 11 13566666777778999999996 57888888886 9997643
No 301
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=73.99 E-value=2.9 Score=39.49 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=72.0
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEecc----CC-----CCCCCHHHHHHHHhcCCCCCeeccccc
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD----EK-----YFKGSFENLEAVRSAGVKCPLLCKEFI 248 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD----~~-----fF~GS~edL~~VR~a~v~lPVLrKDFI 248 (355)
+||.+|- + .++|+.-+++||.|+-+|-- =+ ----++.-++.+.++ |++||+.|==|
T Consensus 16 GVIMDV~-------------n-~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~a-VsIPVMAK~RI 80 (208)
T PF01680_consen 16 GVIMDVT-------------N-AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDA-VSIPVMAKVRI 80 (208)
T ss_dssp EEEEEES-------------S-HHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH--SSEEEEEEET
T ss_pred CeEEEec-------------C-HHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHh-eEeceeecccc
Confidence 6999882 2 37999999999999988752 11 122356778888886 99999999988
Q ss_pred cC--HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 249 VD--AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 249 Id--pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
=| +-||.|| .|.|.|= =--+|++.|=.+-++ =+.+..--+.-..|.-|.-|=+. +||.+|=.-+-
T Consensus 81 GHfvEAqiLea--lgVD~ID-ESEVLTpAD~~~HI~-K~~F~vPFVcGarnLGEALRRI~-EGAaMIRtKGE 147 (208)
T PF01680_consen 81 GHFVEAQILEA--LGVDYID-ESEVLTPADEENHID-KHNFKVPFVCGARNLGEALRRIA-EGAAMIRTKGE 147 (208)
T ss_dssp T-HHHHHHHHH--TT-SEEE-EETTS--S-SS-----GGG-SS-EEEEESSHHHHHHHHH-TT-SEEEEETT
T ss_pred ceeehhhhHHH--hCCceec-ccccccccccccccc-chhCCCCeEecCCCHHHHHhhHH-hhhhhhcccCC
Confidence 55 5688887 6888641 112344433222111 13344445567889988888776 59988876654
No 302
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=9.1 Score=38.74 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCcchHHHHh---------cCCHHHHHHHHHHHHHcCCcEEEEeCC----------HHHHHHHhccCCCe
Q 018446 251 AWQIYYARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTALVEVHD----------EREMDRVLGIEGIE 311 (355)
Q Consensus 251 pyQI~eAr~~GADAVLLIaa---------iL~~~~L~~L~~~A~~LGLeaLVEVH~----------~eELerAl~l~ga~ 311 (355)
--+++.|..+|||||.+=-. -++.++|++.+++||+.|....|=+.+ .+.++++.++ |++
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~-GvD 94 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL-GVD 94 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc-CCC
Confidence 35678888899999987533 378899999999999999999887764 3456666665 776
Q ss_pred EEEee
Q 018446 312 LIGIN 316 (355)
Q Consensus 312 iIGIN 316 (355)
-|=++
T Consensus 95 aviv~ 99 (347)
T COG0826 95 AVIVA 99 (347)
T ss_pred EEEEc
Confidence 55554
No 303
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=73.88 E-value=4.5 Score=40.32 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=45.3
Q ss_pred CC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 272 LP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 272 L~-~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
++ .+-|+-|.+...++||-++-|||+.++++.+.+. ++||=|-.||-..|.
T Consensus 70 ~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~--~DilQIgAr~~rqtd 121 (290)
T PLN03033 70 PGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV--ADIIQIPAFLCRQTD 121 (290)
T ss_pred CCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh--CcEEeeCcHHHHHHH
Confidence 56 6679999999999999999999999999999885 799999999886554
No 304
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=73.70 E-value=7.6 Score=37.75 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=44.7
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC----HHHHHHHHhcCC-CCCeecc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGV-KCPLLCK 245 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS----~edL~~VR~a~v-~lPVLrK 245 (355)
++..||+=+-..| ..|..++|+.+++.||+++.|.+ |.||.-+ ++++..|.++ + ++||+-=
T Consensus 68 g~~pvi~gv~~~~--------t~~ai~~a~~A~~~Gad~v~v~p-P~y~~~~~~~l~~~f~~ia~a-~~~lpv~iY 133 (294)
T TIGR02313 68 GRIPFAPGTGALN--------HDETLELTKFAEEAGADAAMVIV-PYYNKPNQEALYDHFAEVADA-VPDFPIIIY 133 (294)
T ss_pred CCCcEEEECCcch--------HHHHHHHHHHHHHcCCCEEEEcC-ccCCCCCHHHHHHHHHHHHHh-ccCCCEEEE
Confidence 5567887663322 23678999999999999999998 7788866 4556677775 6 7887733
No 305
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=73.57 E-value=5.8 Score=39.20 Aligned_cols=94 Identities=32% Similarity=0.343 Sum_probs=62.5
Q ss_pred CCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEec-cCCCCC-----CCHHHHHH
Q 018446 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFK-----GSFENLEA 232 (355)
Q Consensus 159 p~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLT-D~~fF~-----GS~edL~~ 232 (355)
|+.++.+.++.. ...||+-+ +| ++-|+...+.|+++|-+-- |----. +.+..+..
T Consensus 124 p~~~~i~~l~~~-----gi~v~~~v----~s----------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~ 184 (330)
T PF03060_consen 124 PPPEVIERLHAA-----GIKVIPQV----TS----------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQ 184 (330)
T ss_dssp C-HHHHHHHHHT-----T-EEEEEE----SS----------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHH
T ss_pred chHHHHHHHHHc-----CCcccccc----CC----------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHH
Confidence 446777777764 35677766 33 3567888899999987763 221111 35677778
Q ss_pred HHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 233 VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
++++ +++||+.===|.|+.+|..|..+|||+|.+=.+.|
T Consensus 185 v~~~-~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 185 VRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp HHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHH
T ss_pred Hhhh-cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEE
Confidence 8886 89999999999999999999999999999855443
No 306
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=73.53 E-value=12 Score=35.26 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH
Q 018446 201 EIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL 266 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL 266 (355)
.+|.+-+..|+.-|=+-- +.-++.++.+.++.+|+. +++|+.-=-=|-++-|+.++...|||.|.
T Consensus 138 ~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 138 AYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKA-SGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHh-hCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 334444456887665532 334556999999999996 79998876666699999998899999875
No 307
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=73.49 E-value=2.1 Score=39.85 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCcchHHHHhc---CCH------HHHHHHHHHHHHcCCcEEEEeCCHHHH----------H----HHhcc
Q 018446 251 AWQIYYARTKGADAVLLIAAV---LPD------LDIRYMTKICKLLGLTALVEVHDEREM----------D----RVLGI 307 (355)
Q Consensus 251 pyQI~eAr~~GADAVLLIaai---L~~------~~L~~L~~~A~~LGLeaLVEVH~~eEL----------e----rAl~l 307 (355)
-+++.+|..+|||+|=+.+.+ .+. +++..+.+.|+.+||-.++|.--..+- . .+.++
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHh
Confidence 789999999999998766555 442 467788899999999999995432222 2 23454
Q ss_pred CCCeEEEeeCC
Q 018446 308 EGIELIGINNR 318 (355)
Q Consensus 308 ~ga~iIGINNR 318 (355)
||++|=.+-=
T Consensus 159 -GaD~vKt~tg 168 (236)
T PF01791_consen 159 -GADFVKTSTG 168 (236)
T ss_dssp -T-SEEEEE-S
T ss_pred -CCCEEEecCC
Confidence 9999877654
No 308
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=73.42 E-value=24 Score=38.29 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHcCceEEEEec----cC-CCCC--CCHHHHHHHHhcCCCCCe--ecc------------ccccCHHHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILT----DE-KYFK--GSFENLEAVRSAGVKCPL--LCK------------EFIVDAWQIYY 256 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT----D~-~fF~--GS~edL~~VR~a~v~lPV--LrK------------DFIIdpyQI~e 256 (355)
|-..+|..+.+.|...|=+.- |- -.|. ..++.|+.+|+...+.|+ |+. |.+ ..-|..
T Consensus 28 d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv--~~~v~~ 105 (593)
T PRK14040 28 DMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVV--ERFVER 105 (593)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHH--HHHHHH
Confidence 667899999999999987731 10 0111 347888899886556664 222 222 344788
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEE---E----EeCCHHHHHH----HhccCCCeEEEeeCCCCCcccc
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL---V----EVHDEREMDR----VLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaL---V----EVH~~eELer----Al~l~ga~iIGINNRdL~Tfev 325 (355)
|..+|.|.|-+-.++=.-+.+...+++|+++|+.+- . .+||.+.+.. +.++ |++.|.|-.-. =-.
T Consensus 106 a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~-Gad~i~i~Dt~---G~l 181 (593)
T PRK14040 106 AVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM-GVDSLCIKDMA---GLL 181 (593)
T ss_pred HHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc-CCCEEEECCCC---CCc
Confidence 999999986655444444568889999999999742 2 3455554433 3443 88888875421 113
Q ss_pred ChhhHHhhhcccc
Q 018446 326 DNSNTKKLLEGER 338 (355)
Q Consensus 326 Dl~~t~~L~~~~~ 338 (355)
.+..+.+|.+.++
T Consensus 182 ~P~~~~~lv~~lk 194 (593)
T PRK14040 182 KPYAAYELVSRIK 194 (593)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666655443
No 309
>PRK07714 hypothetical protein; Provisional
Probab=73.35 E-value=27 Score=28.89 Aligned_cols=84 Identities=11% Similarity=0.200 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcc
Q 018446 228 ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGI 307 (355)
Q Consensus 228 edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l 307 (355)
..|..+|+++ ..+.=.-|+.+|...|--.+++++.=.++...+.+..+|...+... +++.+.+||-.|+..
T Consensus 8 ~~Lgla~raG--------k~v~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~-~~~~sk~eLG~a~Gk 78 (100)
T PRK07714 8 SFLGLANRAR--------KVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPM-RKVENRQQLGHAIGK 78 (100)
T ss_pred HHHHHHHHhC--------CeeecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCE-EEeCCHHHHHHHhCC
Confidence 4455555542 3445556788888888878888888888888888999999999876 578999999999986
Q ss_pred CCCeEEEeeCCCC
Q 018446 308 EGIELIGINNRNL 320 (355)
Q Consensus 308 ~ga~iIGINNRdL 320 (355)
+...++||.+..+
T Consensus 79 ~~~~~vai~d~g~ 91 (100)
T PRK07714 79 DERVVVAVLDEGF 91 (100)
T ss_pred CcceEEEEeCchh
Confidence 4455899977654
No 310
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=73.03 E-value=10 Score=36.48 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHcCceEEEEec-cCCCCCCCHHHHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLT-D~~fF~GS~edL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
+..++.++ .+.||..|.|.- |-..|.-+++....+.+... ..|+++-==|.++-++.+++.+|||+|+.--+++..+
T Consensus 169 ~~~E~~~A-~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 169 DEEELERA-LKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred CHHHHHHH-HHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 44455443 367999999864 33367777888888776411 2467765556689999999999999999988888776
Q ss_pred HHHHH
Q 018446 276 DIRYM 280 (355)
Q Consensus 276 ~L~~L 280 (355)
+....
T Consensus 248 dp~~~ 252 (260)
T PRK00278 248 DPGAA 252 (260)
T ss_pred CHHHH
Confidence 65443
No 311
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=72.98 E-value=19 Score=34.35 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=58.5
Q ss_pred CHHHHHHHHhcCCCCCeec--cc-c--ccCH------HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-
Q 018446 226 SFENLEAVRSAGVKCPLLC--KE-F--IVDA------WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV- 293 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLr--KD-F--IIdp------yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV- 293 (355)
+.+-|..+|+....+|+.. .. . .-++ ..+..++..|++++-+-...|. .-..+++.|++.||...+
T Consensus 179 ~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~v~~~~~~Gl~v~vW 256 (282)
T cd08605 179 DPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL--RNPTAVSLVKASGLELGTY 256 (282)
T ss_pred CHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh--cCcHHHHHHHHcCcEEEEe
Confidence 4678888887545566332 11 0 0111 2345667789998776555431 113689999999999999
Q ss_pred --EeCCHHHHHHHhccCCCeEEEee
Q 018446 294 --EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 294 --EVH~~eELerAl~l~ga~iIGIN 316 (355)
.|.+.+++++.+++ |++-|--|
T Consensus 257 Tv~~n~~~~~~~l~~~-GVdgIiTD 280 (282)
T cd08605 257 GKLNNDAEAVERQADL-GVDGVIVD 280 (282)
T ss_pred CCCCCCHHHHHHHHHc-CCCEEEeC
Confidence 45899999999997 88766443
No 312
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=72.87 E-value=13 Score=36.09 Aligned_cols=60 Identities=27% Similarity=0.321 Sum_probs=42.3
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHH----HHHHHHhcCCCCCee
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLL 243 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~e----dL~~VR~a~v~lPVL 243 (355)
++..||+=+-..| ..+..++|+.+++.||+++.|.+ |.||..+.+ ++..|.++..++||+
T Consensus 69 ~~~pvi~gv~~~~--------t~~~i~la~~a~~~Gad~v~v~~-P~y~~~~~~~i~~yf~~v~~~~~~lpv~ 132 (290)
T TIGR00683 69 DQIALIAQVGSVN--------LKEAVELGKYATELGYDCLSAVT-PFYYKFSFPEIKHYYDTIIAETGGLNMI 132 (290)
T ss_pred CCCcEEEecCCCC--------HHHHHHHHHHHHHhCCCEEEEeC-CcCCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence 4566887763222 23678999999999999999966 889988754 455565542267775
No 313
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.86 E-value=15 Score=36.00 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=30.9
Q ss_pred CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcc
Q 018446 289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG 336 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~ 336 (355)
+-.=|||||.+|+.+|... |++.|++.| +.++...++.+.
T Consensus 189 ~~Igvsv~tleea~~A~~~-gaDyI~lD~-------~~~e~l~~~~~~ 228 (277)
T PRK08072 189 VKIEVETETEEQVREAVAA-GADIIMFDN-------RTPDEIREFVKL 228 (277)
T ss_pred CEEEEEeCCHHHHHHHHHc-CCCEEEECC-------CCHHHHHHHHHh
Confidence 4567999999999999986 999999954 455555555543
No 314
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=72.75 E-value=3.3 Score=39.85 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=79.8
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC-----HHH-----HHHHHhcCCCCCeecc-
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS-----FEN-----LEAVRSAGVKCPLLCK- 245 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS-----~ed-----L~~VR~a~v~lPVLrK- 245 (355)
..||+-+-..++ . ..-|-.++|+.++ .||++|=++.--....|. .++ +..+|+. +++||+-|
T Consensus 97 ~pvi~Si~~~~~--~---~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKL 169 (295)
T PF01180_consen 97 IPVIASINGDSE--E---EIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA-VDIPVFVKL 169 (295)
T ss_dssp EEEEEEE-TSSS--G---HHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH-HSSEEEEEE
T ss_pred eeEEEEeecCCc--h---hHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc-cCCCEEEEe
Confidence 468887755541 0 0125567777777 789999886433333332 222 2234554 68999887
Q ss_pred --c--cccCHHHHHHHHHcCCcchHHHHhcC---------------------C-----HHHHHHHHHHHHHcC--CcE--
Q 018446 246 --E--FIVDAWQIYYARTKGADAVLLIAAVL---------------------P-----DLDIRYMTKICKLLG--LTA-- 291 (355)
Q Consensus 246 --D--FIIdpyQI~eAr~~GADAVLLIaaiL---------------------~-----~~~L~~L~~~A~~LG--Lea-- 291 (355)
| .+...-++.++.+.|+|+|.++=.+. + +.-|....++++.++ +..
T Consensus 170 ~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig 249 (295)
T PF01180_consen 170 SPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIG 249 (295)
T ss_dssp -STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEE
T ss_pred cCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEE
Confidence 2 22233456666688999998543321 1 235666777788888 543
Q ss_pred EEEeCCHHHHHHHhccCCCeEEEee
Q 018446 292 LVEVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 292 LVEVH~~eELerAl~l~ga~iIGIN 316 (355)
.==|||.+|..+.+.+ ||+.++|-
T Consensus 250 ~GGI~s~~da~e~l~a-GA~~Vqv~ 273 (295)
T PF01180_consen 250 VGGIHSGEDAIEFLMA-GASAVQVC 273 (295)
T ss_dssp ESS--SHHHHHHHHHH-TESEEEES
T ss_pred eCCcCCHHHHHHHHHh-CCCHheec
Confidence 2358999999999997 99999873
No 315
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.62 E-value=8.7 Score=37.97 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=28.6
Q ss_pred CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
...-|||.|.+|++.|+++ |+++|...|-+.+
T Consensus 195 ~kIeVEv~tleea~ea~~~-gaDiI~LDn~s~e 226 (281)
T PRK06106 195 VKIEVEVDTLDQLEEALEL-GVDAVLLDNMTPD 226 (281)
T ss_pred CcEEEEeCCHHHHHHHHHc-CCCEEEeCCCCHH
Confidence 5688999999999999997 9999999998664
No 316
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.56 E-value=42 Score=33.67 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCC----CC------CCCHHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcch
Q 018446 198 DPVEIARSYEKGGAACLSILTDEK----YF------KGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAV 265 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~----fF------~GS~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAV 265 (355)
+-..+++...++|...|=|=.-.. .| ..+.+.++.+++... .+-.|+-==+-+.-.+..|..+|+|.|
T Consensus 26 ~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~i 105 (337)
T PRK08195 26 QVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVV 105 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEE
Confidence 345788888899998887732111 11 124677777765311 222222100114567888999999986
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHH----HhccCCCeEEEeeCCCCCccc-cChhhHHhhhc
Q 018446 266 LLIAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMDR----VLGIEGIELIGINNRNLETFE-VDNSNTKKLLE 335 (355)
Q Consensus 266 LLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELer----Al~l~ga~iIGINNRdL~Tfe-vDl~~t~~L~~ 335 (355)
=+....=..+.+...+++|+++|+++.+-+ ++.+++.. +.+. |++.|.|-. |+- ..++...++..
T Consensus 106 ri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~-Ga~~i~i~D----T~G~~~P~~v~~~v~ 180 (337)
T PRK08195 106 RVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY-GAQCVYVVD----SAGALLPEDVRDRVR 180 (337)
T ss_pred EEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC-CCCEEEeCC----CCCCCCHHHHHHHHH
Confidence 654443334567889999999999887643 67766543 3343 788777643 222 23445555544
Q ss_pred c
Q 018446 336 G 336 (355)
Q Consensus 336 ~ 336 (355)
.
T Consensus 181 ~ 181 (337)
T PRK08195 181 A 181 (337)
T ss_pred H
Confidence 3
No 317
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=72.33 E-value=49 Score=31.91 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHcCceEEEEeccC------CCCC-CCHHHHHHHHhcCCCCCeec--c--cc-c-------cCHHHHHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDE------KYFK-GSFENLEAVRSAGVKCPLLC--K--EF-I-------VDAWQIYYAR 258 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~------~fF~-GS~edL~~VR~a~v~lPVLr--K--DF-I-------IdpyQI~eAr 258 (355)
+-..+|+.+.+.|...|=+=.-. .|.+ ..++.++.+++...+.++.. . .+ . +-+--|..+.
T Consensus 22 ~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 22 DMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHH
Confidence 44578888889898887554211 1111 12466667766433344332 1 11 1 1233456688
Q ss_pred HcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-------eCCHHHHH----HHhccCCCeEEEeeCCCCCccc-cC
Q 018446 259 TKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-------VHDEREMD----RVLGIEGIELIGINNRNLETFE-VD 326 (355)
Q Consensus 259 ~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-------VH~~eELe----rAl~l~ga~iIGINNRdL~Tfe-vD 326 (355)
.+|.|.|=+....=+-+.+...+++|++.|+++.+= .++.+.+. ++.++ |++.|.+- +|.- ..
T Consensus 102 ~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~l~----DT~G~~~ 176 (275)
T cd07937 102 KNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDM-GADSICIK----DMAGLLT 176 (275)
T ss_pred HcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEc----CCCCCCC
Confidence 889999777655555567889999999999987642 35555554 44554 88888775 2332 23
Q ss_pred hhhHHhhhcc
Q 018446 327 NSNTKKLLEG 336 (355)
Q Consensus 327 l~~t~~L~~~ 336 (355)
+....++...
T Consensus 177 P~~v~~lv~~ 186 (275)
T cd07937 177 PYAAYELVKA 186 (275)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 318
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=72.27 E-value=5.3 Score=39.24 Aligned_cols=77 Identities=22% Similarity=0.412 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHcCceEEEEe--ccCCCCCC--CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHc-CCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSIL--TDEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVL--TD~~fF~G--S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~-GADAVLLIaaiL 272 (355)
+..++++..+++|+++|.|- |-.+.|.| +++.+..++++ +++||+..==|.+..++.+.... |+|+|.+==++|
T Consensus 139 ~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~-~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 139 ETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEA-LPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred HHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhc-ccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence 47899999999999999996 46667765 46778888885 88999999989999999988777 999998876666
Q ss_pred CHH
Q 018446 273 PDL 275 (355)
Q Consensus 273 ~~~ 275 (355)
.+-
T Consensus 218 ~nP 220 (309)
T PF01207_consen 218 GNP 220 (309)
T ss_dssp C-C
T ss_pred hcC
Confidence 553
No 319
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=71.98 E-value=21 Score=33.96 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=40.5
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhc-cCCCe
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLG-IEGIE 311 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~-l~ga~ 311 (355)
...|+|.+-+-...+++ .+++.++..|+.+.+ -|.+.+++++.++ + |++
T Consensus 202 ~~~~~~~v~~~~~~~~~----~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~-GVd 252 (258)
T cd08573 202 YFLGVSALLIHKDDISS----AYVRYWRARGIRVIAWTVNTPTEKQYFAKTL-NVP 252 (258)
T ss_pred hhcCeeEEEechHhcCH----HHHHHHHHCCCEEEEEecCCHHHHHHHHHHh-CCC
Confidence 45788887777677765 578999999999887 5688999999998 8 888
No 320
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=71.86 E-value=20 Score=36.48 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=96.1
Q ss_pred EEeEeeec---CC-CCCCCCCCCCHHHHHHHHH-HcCceEEEEeccCCCCC--CCHHHHHHHHhcCCC-CCeecccccc-
Q 018446 179 LIAEVKKA---SP-SRGILREDFDPVEIARSYE-KGGAACLSILTDEKYFK--GSFENLEAVRSAGVK-CPLLCKEFIV- 249 (355)
Q Consensus 179 VIAEvKRa---SP-SkG~I~~~~Dp~~iA~~Ye-~~GAaaISVLTD~~fF~--GS~edL~~VR~a~v~-lPVLrKDFII- 249 (355)
=..|+|-. =| ..|.+...---.++|..-. +.|-.++|--.++.|.. +-.+.+..+|+. .. .||..|-...
T Consensus 147 ~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~-~~~~pV~vK~~~~~ 225 (392)
T cd02808 147 DAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREA-TGGKPIGVKLVAGH 225 (392)
T ss_pred cEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHh-CCCceEEEEECCCC
Confidence 34677743 23 3345544333345666544 46788888776665543 347788889986 66 9999999876
Q ss_pred CHHHHHHHHHcC-CcchHHHHhc---------------CCH-HHHHHHHHHHHHcCC----cEEE--EeCCHHHHHHHhc
Q 018446 250 DAWQIYYARTKG-ADAVLLIAAV---------------LPD-LDIRYMTKICKLLGL----TALV--EVHDEREMDRVLG 306 (355)
Q Consensus 250 dpyQI~eAr~~G-ADAVLLIaai---------------L~~-~~L~~L~~~A~~LGL----eaLV--EVH~~eELerAl~ 306 (355)
++..+..+...| +|+|.+--.- ++. .-|.+..+....+|+ ..+. =+.|..++-+++.
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 777888888777 9998864331 221 234455555665654 3333 2689999999999
Q ss_pred cCCCeEEEeeCCCCCcc
Q 018446 307 IEGIELIGINNRNLETF 323 (355)
Q Consensus 307 l~ga~iIGINNRdL~Tf 323 (355)
+ ||+.+++-..-|...
T Consensus 306 L-GAd~V~ig~~~l~al 321 (392)
T cd02808 306 L-GADAVGIGTAALIAL 321 (392)
T ss_pred c-CCCeeeechHHHHhc
Confidence 8 999999998888765
No 321
>PRK07283 hypothetical protein; Provisional
Probab=71.84 E-value=14 Score=30.62 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=59.0
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL 320 (355)
.+.=..|+.+|...|--.+++++.=.++..-+.+.+.|...+... +++.|.+||-+|+.- +-.++||.+.++
T Consensus 19 lv~G~~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~-~~~~t~~eLG~a~Gk-~~~vvai~d~g~ 90 (98)
T PRK07283 19 IISGEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEV-STVFSTLELSAAVGK-PRKVLAVTDAGF 90 (98)
T ss_pred eeEcHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCE-EEeCCHHHHHHHhCC-CceEEEEeChhH
Confidence 345567888998888877788888888878888889999998755 688899999999986 567899987665
No 322
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=71.52 E-value=7.9 Score=37.44 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=44.0
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeeccc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKE 246 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKD 246 (355)
++..||+=+- . + ..+..++++.+++.||+++.+++ |.||..+. +++..|.++ +++||+-=+
T Consensus 68 ~~~pvi~gv~-~--~------t~~~i~~a~~a~~~Gad~v~~~p-P~y~~~~~~~i~~~f~~v~~~-~~~pi~lYn 132 (289)
T cd00951 68 GRVPVLAGAG-Y--G------TATAIAYAQAAEKAGADGILLLP-PYLTEAPQEGLYAHVEAVCKS-TDLGVIVYN 132 (289)
T ss_pred CCCCEEEecC-C--C------HHHHHHHHHHHHHhCCCEEEECC-CCCCCCCHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 4567888773 1 1 23678999999999999998866 66777654 556677775 789976544
No 323
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=71.46 E-value=2.5 Score=41.85 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHc-C--CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCc
Q 018446 276 DIRYMTKICKLL-G--LTALVEVHDEREMDRVLGIEGIELIGINNRNLET 322 (355)
Q Consensus 276 ~L~~L~~~A~~L-G--LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~T 322 (355)
.+.+-++.++.. + -..=|||.|.+|+++|+++ ||+||...|..+.+
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a-gaDiImLDNm~~e~ 221 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA-GADIIMLDNMSPEE 221 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc-CCCEEEecCCCHHH
Confidence 455666777665 3 2357999999999999997 99999999876643
No 324
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=71.38 E-value=15 Score=35.91 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCC--CCC----CHHHHHHHHhcCCCCCeeccc-cccCHHHHHHHHHcCCcchHHHH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKY--FKG----SFENLEAVRSAGVKCPLLCKE-FIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~f--F~G----S~edL~~VR~a~v~lPVLrKD-FIIdpyQI~eAr~~GADAVLLIa 269 (355)
.||++..+.+++.|+++|.|=.-+-| |.+ +++.|+.+++. +++|+..-= =.|+.-|+.++..+|++.|-.-.
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~-~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL-TNIPLVLHGASGIPEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH-hCCCEEEECCCCCCHHHHHHHHHcCCCEEEECc
Confidence 48888777776689999997533221 222 48999999986 889975543 46889999999999999986544
Q ss_pred hc
Q 018446 270 AV 271 (355)
Q Consensus 270 ai 271 (355)
.+
T Consensus 232 ~l 233 (282)
T TIGR01859 232 DC 233 (282)
T ss_pred HH
Confidence 33
No 325
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=71.24 E-value=41 Score=33.81 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=85.7
Q ss_pred ccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC
Q 018446 161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240 (355)
Q Consensus 161 rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l 240 (355)
..|.+.|.... + ..+..|+|-..+. ....+++..++.|+.-..|++ |.|+.+-|+.+|+...++
T Consensus 143 PTL~EvL~~~~---~-~~l~IEiK~~~~~--------~~~~v~~~i~~~~~~r~~v~s----f~s~~~~l~~~r~l~P~~ 206 (309)
T cd08613 143 PTLDEVFAAFP---D-RRFLINFKSDDAA--------EGELLAEKLATLPRKRLQVLT----VYGGDKPIAALRELTPDL 206 (309)
T ss_pred cCHHHHHHhcC---C-CcEEEEeCCCCcc--------HHHHHHHHHHhcCccceEEEE----EECCHHHHHHHHHHCCCC
Confidence 34666665432 2 4689999964321 245677777887875433332 556777899998866678
Q ss_pred CeeccccccCHHHHHHHH-----HcCC---cchHHHHhcCCH--HHHHHHHHHHHHcCCcEEEE-----------eCCHH
Q 018446 241 PLLCKEFIVDAWQIYYAR-----TKGA---DAVLLIAAVLPD--LDIRYMTKICKLLGLTALVE-----------VHDER 299 (355)
Q Consensus 241 PVLrKDFIIdpyQI~eAr-----~~GA---DAVLLIaaiL~~--~~L~~L~~~A~~LGLeaLVE-----------VH~~e 299 (355)
+++.+--...-.=.|.+. .-++ +++.+-...-+- -=-..|++.++.+|+.+.|= +.+.+
T Consensus 207 ~~~s~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~ 286 (309)
T cd08613 207 RTLSKASMKDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPE 286 (309)
T ss_pred ceecccchHHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHH
Confidence 877554333222222221 1122 333332221100 00146899999999999987 99999
Q ss_pred HHHHHhccCCCeEEEeeCC
Q 018446 300 EMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 300 ELerAl~l~ga~iIGINNR 318 (355)
+|++.+++ ++.-|--|.=
T Consensus 287 ~~~~l~~~-~~~gi~T~r~ 304 (309)
T cd08613 287 DLKRLPEG-FTGYIWTNKI 304 (309)
T ss_pred HHHHHHhh-CCCeEEeCCH
Confidence 99999997 7777655543
No 326
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.17 E-value=6 Score=39.43 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHHHcC--CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 279 YMTKICKLLG--LTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 279 ~L~~~A~~LG--LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
+.++.++++. ...-|||.|.+|++.|+++ |+++|...|-+.++++
T Consensus 194 ~av~~~r~~~~~~kIeVEvetleea~eA~~a-GaDiImLDnmspe~l~ 240 (294)
T PRK06978 194 AALDAAFALNAGVPVQIEVETLAQLETALAH-GAQSVLLDNFTLDMMR 240 (294)
T ss_pred HHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc-CCCEEEECCCCHHHHH
Confidence 3444444432 4588999999999999997 9999999998766543
No 327
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=71.12 E-value=14 Score=31.91 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=56.2
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhcCCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHhccC-CCeEEEeeCCCC
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLD-IRYMTKICKLLGLTALVEVHDEREMDRVLGIE-GIELIGINNRNL 320 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaaiL~~~~-L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~-ga~iIGINNRdL 320 (355)
++.---|+..|...|---+++++.=.++.+ ...+..+|+..|.. ++.+.|.+||-+|+... .+.++||.+-++
T Consensus 31 lv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp-~~~~~tk~eLG~a~Gk~~~~svvaI~d~g~ 105 (122)
T PRK04175 31 IKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIP-YVYVPSKKDLGKAAGLEVGAAAAAIVDAGK 105 (122)
T ss_pred EeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCC-EEEECCHHHHHHHhCCCCCeEEEEEechhh
Confidence 444555667776667666666676677756 47889999999998 79999999999999875 578999987543
No 328
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=71.09 E-value=15 Score=35.73 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.1
Q ss_pred CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCC
Q 018446 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRN 319 (355)
Q Consensus 288 GLeaLVEVH~~eELerAl~l~ga~iIGINNRd 319 (355)
++-.-|||||.+|+.+|+.. |+++|++-|-.
T Consensus 182 ~~~Igvev~s~eea~~A~~~-gaDyI~ld~~~ 212 (268)
T cd01572 182 TLKIEVEVETLEQLKEALEA-GADIIMLDNMS 212 (268)
T ss_pred CCeEEEEECCHHHHHHHHHc-CCCEEEECCcC
Confidence 45678999999999999986 99999998753
No 329
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=70.98 E-value=45 Score=33.89 Aligned_cols=122 Identities=8% Similarity=0.018 Sum_probs=72.4
Q ss_pred ceEEeEeeecCCCCCCCCCCCC-HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHH
Q 018446 177 PALIAEVKKASPSRGILREDFD-PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIY 255 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~D-p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~ 255 (355)
..+..|+|.. |.. . ....+ ...+.+...+.|...-.| .|. |+.++..+|+...++++.. + -.++ +.
T Consensus 128 ~~l~iEIK~~-~~~-~-~~~~~~~~~v~~~i~~~~~~~~~v-----i~s-Sf~~~~~vr~l~P~~~~~~-~-~~~~--~~ 194 (351)
T cd08608 128 ASVLLNLRRP-PPN-H-PYHQSWINLTLKTILASGIPQEQV-----MWT-PDWQRKLVRKVAPGFQQTS-G-EKLP--VA 194 (351)
T ss_pred CeEEEEECCC-ccc-C-cchhHHHHHHHHHHHHhCCCcCeE-----EEE-cchHHHHHHHHCCCCeeec-c-ccch--HH
Confidence 5699999953 110 0 00011 133455566666431111 111 1223567777555666531 1 1122 34
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEee
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGIN 316 (355)
.++..|++++-+-...+++ .+++.+++.|+.+.| -|.+++++++.+.+ |++-|-=|
T Consensus 195 ~~~~~~~~~l~~~~~~lt~----~~v~~~~~~Gl~V~vWTVN~~~~~~~l~~~-GVdgIiTD 251 (351)
T cd08608 195 SLRERGITRLNLRYTQASA----QEIRDYSASNLSVNLYTVNEPWLYSLLWCS-GVPSVTSD 251 (351)
T ss_pred HHHHcCCeEEccchhhcCH----HHHHHHHHCCCEEEEEecCCHHHHHHHHHC-CCCEEEEC
Confidence 4567899987776666664 678999999999876 67779999999987 87766444
No 330
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=70.97 E-value=17 Score=37.14 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=89.1
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
+++.|-|.|- |+ -|-.+.++...++|++.|-|-+---+-..-.+.++.+|+...++||+.=. +.++-+.
T Consensus 95 ~~l~V~aavg---~~-------~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a 163 (352)
T PF00478_consen 95 GRLLVAAAVG---TR-------DDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGA 163 (352)
T ss_dssp SCBCEEEEEE---SS-------TCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHH
T ss_pred ccceEEEEec---CC-------HHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc-cCCHHHH
Confidence 5566777762 21 14578888999999999988776544444466888888864569999877 7888888
Q ss_pred HHHHHcCCcchHHHH------------hcCCH--HHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhccCCCeEEEee
Q 018446 255 YYARTKGADAVLLIA------------AVLPD--LDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 255 ~eAr~~GADAVLLIa------------aiL~~--~~L~~L~~~A~~LGLeaLVE--VH~~eELerAl~l~ga~iIGIN 316 (355)
..-..+|||+|..=. .+=-+ .-+.+..+.|+.+|...+-- +++.-|+-+||.+ ||+.+.+-
T Consensus 164 ~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~-GAd~VMlG 240 (352)
T PF00478_consen 164 KDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAA-GADAVMLG 240 (352)
T ss_dssp HHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHT-T-SEEEES
T ss_pred HHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeee-cccceeec
Confidence 888999999986421 11112 13455667788888766665 8999999999997 99988764
No 331
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=70.90 E-value=9.4 Score=37.58 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-----CCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-----KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-----~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
+..+-|+.|.++||+||.|- +..-+.+.+..+.+. + ++|++.-----...-+.+-..+|..-|..-...
T Consensus 170 eAi~Ra~ay~eAGAD~ifv~----~~~~~~~ei~~~~~~-~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~ 243 (285)
T TIGR02320 170 DALKRAEAYAEAGADGIMIH----SRKKDPDEILEFARR-FRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHL 243 (285)
T ss_pred HHHHHHHHHHHcCCCEEEec----CCCCCHHHHHHHHHH-hhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHH
Confidence 56788999999999999996 233577888888764 4 468874210012235777888899987664333
No 332
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=70.72 E-value=49 Score=31.46 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCC---
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLP--- 273 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~--- 273 (355)
+|..+.+.|.++||+.|++-.|.... -.+.|..+|+++...= .|..+ .|...++-..-=.|.||++.--=+
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~~~--~~~~l~~Ir~~g~k~GlalnP~---T~~~~i~~~l~~vD~VlvMtV~PGf~G 147 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEASRH--VHRTIQLIKSHGCQAGLVLNPA---TPVDILDWVLPELDLVLVMSVNPGFGG 147 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCccc--HHHHHHHHHHCCCceeEEeCCC---CCHHHHHHHHhhcCEEEEEEECCCCCC
Confidence 79999999999999999999996421 2477788998753321 23333 233444445557888777543211
Q ss_pred -------HHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhccCCCeEEEe
Q 018446 274 -------DLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 274 -------~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~l~ga~iIGI 315 (355)
-+.++.+.++..+.|++..+||- |.+-+....++ ||+++-+
T Consensus 148 Q~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~a-GaDi~V~ 198 (223)
T PRK08745 148 QAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAA-GADTFVA 198 (223)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHc-CCCEEEE
Confidence 13556666666677999999996 67888888876 8987754
No 333
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=70.53 E-value=59 Score=31.61 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=71.7
Q ss_pred ceEEeEeeecCCCCC---CCCCCCCH----HHHHHHHHHcCceEEEEeccCCCCCC-CHHHHHHHHhcCCCCCeec--cc
Q 018446 177 PALIAEVKKASPSRG---ILREDFDP----VEIARSYEKGGAACLSILTDEKYFKG-SFENLEAVRSAGVKCPLLC--KE 246 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG---~I~~~~Dp----~~iA~~Ye~~GAaaISVLTD~~fF~G-S~edL~~VR~a~v~lPVLr--KD 246 (355)
..+..|+|-.++... .+....+. ..+.....+.|. .+.-.|.. +.+-|..+|+....+|+.. .+
T Consensus 137 ~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~------~~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~ 210 (293)
T cd08572 137 LGFNIEIKYPQLLEDGEGELTPYFERNAFVDTILAVVFEHAG------GRRIIFSSFDPDICIMLRLKQNKYPVLFLTNG 210 (293)
T ss_pred cceEEEEecCCccccccccccchHHHHHHHHHHHHHHHHhCC------CCcEEEECCCHHHHHHHHhhCccCCEEEEecC
Confidence 568999995433221 11222221 123344444432 23223332 5777888887544566432 21
Q ss_pred cc-----cCH----HH--HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-e--CCHHHHHHHhccCCCeE
Q 018446 247 FI-----VDA----WQ--IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-V--HDEREMDRVLGIEGIEL 312 (355)
Q Consensus 247 FI-----Idp----yQ--I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-V--H~~eELerAl~l~ga~i 312 (355)
.. .++ +| +..++..|++++.+-...+. .-..+++.|++.||.+.+= | .+.+++++..++ |++-
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~Gl~v~~wTv~~n~~~~~~~l~~~-GVdg 287 (293)
T cd08572 211 GTNEVEHMDPRRRSLQAAVNFALAEGLLGVVLHAEDLL--KNPSLISLVKALGLVLFTYGDDNNDPENVKKQKEL-GVDG 287 (293)
T ss_pred CCCcccccchhhhhHHHHHHHHHHCCCeEEEechHHhh--cCcHHHHHHHHcCcEEEEECCCCCCHHHHHHHHHc-CCCE
Confidence 11 111 11 34567789998765444331 0147899999999998774 5 568888888886 7765
Q ss_pred E
Q 018446 313 I 313 (355)
Q Consensus 313 I 313 (355)
|
T Consensus 288 I 288 (293)
T cd08572 288 V 288 (293)
T ss_pred E
Confidence 4
No 334
>PRK07695 transcriptional regulator TenI; Provisional
Probab=70.41 E-value=21 Score=32.30 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHcCceEEEE------eccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 202 IARSYEKGGAACLSI------LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 202 iA~~Ye~~GAaaISV------LTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
.++...+.||+.+.. .|.+.+-...++.++.+++. +++||..=-=| ++-.+.+....|||+|-++-++...
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 456667789988742 11122223357889999875 78999987655 9999999999999999998888753
No 335
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.38 E-value=6.8 Score=38.72 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=29.5
Q ss_pred CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446 289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tf 323 (355)
...-|||.|.+|++.|+++ |+++|...|-+..+.
T Consensus 194 ~kIeVEv~slee~~ea~~~-gaDiImLDn~s~e~l 227 (281)
T PRK06543 194 THVEVEVDRLDQIEPVLAA-GVDTIMLDNFSLDDL 227 (281)
T ss_pred CcEEEEeCCHHHHHHHHhc-CCCEEEECCCCHHHH
Confidence 5688999999999999997 999999998766543
No 336
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=70.31 E-value=9.5 Score=39.19 Aligned_cols=70 Identities=26% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHHHHcCceEEEEeccC-CCC---CCCHHHHHHHHhcC-CCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 201 EIARSYEKGGAACLSILTDE-KYF---KGSFENLEAVRSAG-VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~-~fF---~GS~edL~~VR~a~-v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
+-|+...+.||++|-|=--. ..+ ..+.+-|..++++. .++||+.-==|-++..|..|.++|||+|.+=-.
T Consensus 257 ~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~ 331 (381)
T PRK11197 257 EDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRA 331 (381)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHH
Confidence 34555566899998763211 112 23457777877641 369999999999999999999999999976433
No 337
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=70.09 E-value=4.2 Score=40.00 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=67.2
Q ss_pred ceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccC---C---CCCCC-----------HHHHHHHHhc--C
Q 018446 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE---K---YFKGS-----------FENLEAVRSA--G 237 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~---~---fF~GS-----------~edL~~VR~a--~ 237 (355)
..||+.+.-. | ...+.....+.|++.|+++|.+ -|. + |++|. .+-++.++++ +
T Consensus 79 ~Pv~~D~d~G----g---~~~~v~r~V~~l~~aGvaGi~i-EDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~ 150 (285)
T TIGR02320 79 KPIILDGDTG----G---NFEHFRRLVRKLERRGVSAVCI-EDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT 150 (285)
T ss_pred CCEEEecCCC----C---CHHHHHHHHHHHHHcCCeEEEE-eccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC
Confidence 3578777432 1 1123334478999999999987 121 1 13332 2333334432 2
Q ss_pred CCCCeecc-ccccCHHHH-------HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHc--CCcEEEEeC------CHHHH
Q 018446 238 VKCPLLCK-EFIVDAWQI-------YYARTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVEVH------DEREM 301 (355)
Q Consensus 238 v~lPVLrK-DFIIdpyQI-------~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~L--GLeaLVEVH------~~eEL 301 (355)
.+++|+.. |-.+....+ ...+.+|||+|.......+.+++..+.+..... . -+|+=+. +.+||
T Consensus 151 ~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~-~pl~~~~~~~~~~~~~eL 229 (285)
T TIGR02320 151 EDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPR-TPLVIVPTSYYTTPTDEF 229 (285)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCC-CCEEEecCCCCCCCHHHH
Confidence 45777655 644322122 234568999998874455565555555443310 1 1333222 56666
Q ss_pred HHHhccCCCeEEEeeC
Q 018446 302 DRVLGIEGIELIGINN 317 (355)
Q Consensus 302 erAl~l~ga~iIGINN 317 (355)
.. + |++.|-.-|
T Consensus 230 ~~---l-G~~~v~~~~ 241 (285)
T TIGR02320 230 RD---A-GISVVIYAN 241 (285)
T ss_pred HH---c-CCCEEEEhH
Confidence 54 4 777776643
No 338
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=69.98 E-value=16 Score=31.33 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=57.6
Q ss_pred ccCHHHHHHHHHcCCcchHHHHhcCCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHhccC-CCeEEEeeCCCCC
Q 018446 248 IVDAWQIYYARTKGADAVLLIAAVLPDLD-IRYMTKICKLLGLTALVEVHDEREMDRVLGIE-GIELIGINNRNLE 321 (355)
Q Consensus 248 IIdpyQI~eAr~~GADAVLLIaaiL~~~~-L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~-ga~iIGINNRdL~ 321 (355)
+.---|+..|...|--.+++|+.=.++.+ ...+..+|...+.. ++.+.|.+||-+|+... ++.++||.+.+..
T Consensus 28 ~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip-~~~~~sk~eLG~a~Gk~~~~svvaI~d~g~a 102 (117)
T TIGR03677 28 KKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIP-YVYVKKKEDLGAAAGLEVGAASAAIVDEGKA 102 (117)
T ss_pred eEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCC-EEEeCCHHHHHHHhCCCCCeEEEEEEchhhh
Confidence 34445677777777766777777777765 58888999999987 89999999999999863 6889999986543
No 339
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.89 E-value=12 Score=36.99 Aligned_cols=138 Identities=20% Similarity=0.290 Sum_probs=87.2
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCce----EE--EEeccCCC---CCCCHH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA----CL--SILTDEKY---FKGSFE 228 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAa----aI--SVLTD~~f---F~GS~e 228 (355)
..++.|.+++.+ ....|+.=.|..|-- | ..+.-..+ -||+. .+ +||--.+| |+|-.+
T Consensus 119 T~T~~~v~~~~~------~~~~i~~TRKt~Pg~---R----~l~k~AV~-~GGg~~HR~gL~d~ilikdNHi~~~g~i~~ 184 (288)
T PRK07428 119 TLTRQYVEKIAD------LPTQLVDTRKTTPGL---R----LLEKYATQ-VGGAINHRMGLDDAVMIKDNHIQAAGGIGE 184 (288)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCCcc---h----HHHHHHHH-hcCcccccCCchheeeecHHHHHHhCCHHH
Confidence 346778877732 225777777777742 2 12222233 34432 12 34444433 555455
Q ss_pred HHHHHHhcCCCCCeecccccc---CHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHH
Q 018446 229 NLEAVRSAGVKCPLLCKEFIV---DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (355)
Q Consensus 229 dL~~VR~a~v~lPVLrKDFII---dpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELe 302 (355)
-+..+|+. . |--.| ..+ +.-|..+|..+|||.|+|= -++.+++++.+...+...-.+.+|+. |++.+.
T Consensus 185 av~~~r~~-~--~~~~~-I~VEv~tleea~eA~~~GaD~I~LD--n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~ 258 (288)
T PRK07428 185 AITRIRQR-I--PYPLT-IEVETETLEQVQEALEYGADIIMLD--NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIR 258 (288)
T ss_pred HHHHHHHh-C--CCCCE-EEEECCCHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66677763 2 31111 222 4789999999999998874 77888999988887766778889986 677787
Q ss_pred HHhccCCCeEEEee
Q 018446 303 RVLGIEGIELIGIN 316 (355)
Q Consensus 303 rAl~l~ga~iIGIN 316 (355)
..... |++.|.+-
T Consensus 259 ~ya~t-GvD~Isvg 271 (288)
T PRK07428 259 AVAET-GVDYISSS 271 (288)
T ss_pred HHHHc-CCCEEEEc
Confidence 77775 89988764
No 340
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=69.80 E-value=72 Score=31.87 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~ 276 (355)
.-..++|+.+.+.|+..+.|- +++....+|+++.+.|+|.=- ...+-++.++..++-. ..+=+.++
T Consensus 39 hG~~~va~~l~~~g~~~f~Va--------s~~Ea~~lr~~Gi~~~ilvl~-~~~~~e~~~~i~~~i~-----~~v~s~~~ 104 (365)
T cd06826 39 HGIALVMPSIIAQNIPCVGIT--------SNEEARVVREAGFTGKILRVR-TATPSEIEDALAYNIE-----ELIGSLDQ 104 (365)
T ss_pred ccHHHHHHHHHHCCCCEEEEc--------cHHHHHHHHhcCCCCCEEEEe-CCCHHHHHHHHHcCCE-----EEECCHHH
Confidence 346789999999999987774 577888899887787876542 4578888888776422 34446678
Q ss_pred HHHHHHHHHHcC--CcEEEEeCC---------H--H----HHHHHhccCCCeEEEe
Q 018446 277 IRYMTKICKLLG--LTALVEVHD---------E--R----EMDRVLGIEGIELIGI 315 (355)
Q Consensus 277 L~~L~~~A~~LG--LeaLVEVH~---------~--e----ELerAl~l~ga~iIGI 315 (355)
++.|.++|.++| ..+.+.|.+ . . .+.+.....+.++.||
T Consensus 105 l~~l~~~a~~~~~~~~v~LkvDt~Gm~R~Gi~~~~~~~~~~~~~~~~~~~l~l~Gi 160 (365)
T cd06826 105 AEQIDSLAKRHGKTLPVHLALNSGGMSRNGLELSTAQGKEDAVAIATLPNLKIVGI 160 (365)
T ss_pred HHHHHHHHHHcCCceEEEEEECCCCCCCCCCCcchhhHHHHHHHHHHCCCCcEEEE
Confidence 888888888876 456777776 1 1 1223334457889999
No 341
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.74 E-value=11 Score=36.90 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=63.2
Q ss_pred eEEeEeee-cCCCCCCCCCCCCHHHHHHHHHHcCceEEEE-eccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHH
Q 018446 178 ALIAEVKK-ASPSRGILREDFDPVEIARSYEKGGAACLSI-LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIY 255 (355)
Q Consensus 178 aVIAEvKR-aSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV-LTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~ 255 (355)
++-.+++| +-|+.- ...++...+...|...+-. +||.-=|. +.|-+-
T Consensus 3 G~mlD~~R~~~~~~~------~lk~~id~ma~~k~N~l~lhl~D~f~~~--------------~~p~~~----------- 51 (301)
T cd06565 3 GVHLDLKRNAVPKVS------YLKKLLRLLALLGANGLLLYYEDTFPYE--------------GEPEVG----------- 51 (301)
T ss_pred eEEEecCCCCCCCHH------HHHHHHHHHHHcCCCEEEEEEecceecC--------------CCcccc-----------
Confidence 56778888 777642 2446777788889988888 55521111 123211
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcc
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGI 307 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l 307 (355)
+.-| .++.++++++.++|+++|++++=|+.+.-.++.++..
T Consensus 52 --~~~~---------~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~ 92 (301)
T cd06565 52 --RMRG---------AYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILKH 92 (301)
T ss_pred --cCCC---------CcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhC
Confidence 1122 3899999999999999999999999999999999875
No 342
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=69.53 E-value=7.5 Score=40.77 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-----CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-----~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
.+..+...++|+.+|=.- ++.. ..-+.+..+++. ..+.|++-.|. +|+ |..+|||+|=|=-.=|+.
T Consensus 220 ~~~ve~aL~aGv~~VQLR-eK~l--s~~el~~la~~l~~l~~~~gv~LiIND~----~dl--Al~~gAdGVHLGQeDL~~ 290 (437)
T PRK12290 220 VEWIERLLPLGINTVQLR-IKDP--QQADLEQQIIRAIALGREYNAQVFINDY----WQL--AIKHQAYGVHLGQEDLEE 290 (437)
T ss_pred HHHHHHHHhCCCCEEEEe-CCCC--CHHHHHHHHHHHHHHHHHhCCEEEEECH----HHH--HHHcCCCEEEcChHHcch
Confidence 345667778899886654 4442 222333333321 13567766654 666 788999998443332332
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
.+++.++. -|+-.=+-+|+.+|+.+|... |++-||+---
T Consensus 291 ~~aR~ilg----~~~iIGvStHs~eEl~~A~~~-gaDYI~lGPI 329 (437)
T PRK12290 291 ANLAQLTD----AGIRLGLSTHGYYELLRIVQI-QPSYIALGHI 329 (437)
T ss_pred hhhhhhcC----CCCEEEEecCCHHHHHHHhhc-CCCEEEECCc
Confidence 22222221 133333568999999999986 9999999643
No 343
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=69.52 E-value=12 Score=36.10 Aligned_cols=60 Identities=27% Similarity=0.326 Sum_probs=43.4
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC----HHHHHHHHhcCC-CCCeec
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGV-KCPLLC 244 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS----~edL~~VR~a~v-~lPVLr 244 (355)
++..||+=+-..|. .+..++|+.+++.||+|+.++. |.||.-+ ++++..|.++ + ++||+-
T Consensus 69 ~~~~viagv~~~~~--------~~ai~~a~~a~~~Gad~v~~~~-P~y~~~~~~~i~~~~~~v~~a-~~~lpi~i 133 (288)
T cd00954 69 GKVTLIAHVGSLNL--------KESQELAKHAEELGYDAISAIT-PFYYKFSFEEIKDYYREIIAA-AASLPMII 133 (288)
T ss_pred CCCeEEeccCCCCH--------HHHHHHHHHHHHcCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHh-cCCCCEEE
Confidence 45678886633222 2578999999999999999776 6677644 4666777775 7 788774
No 344
>PLN02826 dihydroorotate dehydrogenase
Probab=69.18 E-value=48 Score=34.38 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHcC--ceEEEEeccCCCCCC-----CH----HHHHHHHhc--------CCCCCeecc---cccc-CHHHH
Q 018446 198 DPVEIARSYEKGG--AACLSILTDEKYFKG-----SF----ENLEAVRSA--------GVKCPLLCK---EFIV-DAWQI 254 (355)
Q Consensus 198 Dp~~iA~~Ye~~G--AaaISVLTD~~fF~G-----S~----edL~~VR~a--------~v~lPVLrK---DFII-dpyQI 254 (355)
.+.++++..+..+ |++|-|+---..-.| .. +-|..|++. .+++||+.| |+-- |--.|
T Consensus 202 ~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~i 281 (409)
T PLN02826 202 AAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDI 281 (409)
T ss_pred cHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHH
Confidence 3455555555444 899988733222211 12 233344421 146899998 4432 23334
Q ss_pred HH-HHHcCCcchHHHHhcC------------------C-----HHHHHHHHHHHHHcC--CcEEE--EeCCHHHHHHHhc
Q 018446 255 YY-ARTKGADAVLLIAAVL------------------P-----DLDIRYMTKICKLLG--LTALV--EVHDEREMDRVLG 306 (355)
Q Consensus 255 ~e-Ar~~GADAVLLIaaiL------------------~-----~~~L~~L~~~A~~LG--LeaLV--EVH~~eELerAl~ 306 (355)
.+ |..+|||+|.++=..+ + +.-++-+.++++.++ +..+- =|+|.+++-+.+.
T Consensus 282 a~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~ 361 (409)
T PLN02826 282 AAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR 361 (409)
T ss_pred HHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH
Confidence 43 7889999998874332 1 123455556666663 33322 4799999999998
Q ss_pred cCCCeEEEeeC
Q 018446 307 IEGIELIGINN 317 (355)
Q Consensus 307 l~ga~iIGINN 317 (355)
+ ||++|.|=-
T Consensus 362 A-GAs~VQv~T 371 (409)
T PLN02826 362 A-GASLVQLYT 371 (409)
T ss_pred h-CCCeeeecH
Confidence 7 999999843
No 345
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.07 E-value=12 Score=36.91 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCceEEEEecc---CCCC-----------CCC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-C
Q 018446 199 PVEIARSYEKGGAACLSILTD---EKYF-----------KGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-A 262 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD---~~fF-----------~GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-A 262 (355)
..++++..++.|++.|+|-.- +.++ .|- .+....+|++ +++||+.--=|-++.+..++...| |
T Consensus 238 a~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~a 316 (338)
T cd04733 238 ALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAV 316 (338)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 457899999999999986321 1111 121 3555688886 899999999888999999999987 8
Q ss_pred cchHHHHhcCCHHH
Q 018446 263 DAVLLIAAVLPDLD 276 (355)
Q Consensus 263 DAVLLIaaiL~~~~ 276 (355)
|.|.+==.+|.+-+
T Consensus 317 D~V~lgR~~iadP~ 330 (338)
T cd04733 317 DGIGLARPLALEPD 330 (338)
T ss_pred CeeeeChHhhhCcc
Confidence 99888666665543
No 346
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=69.00 E-value=21 Score=34.71 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHHHHH-cC--CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 281 TKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 281 ~~~A~~-LG--LeaLVEVH~~eELerAl~l~ga~iIGINNRdL 320 (355)
++.+++ +| .-.-|||||.+|+.+|+.. |++.|+..|-..
T Consensus 168 v~~~r~~~~~~~~Igvev~t~eea~~A~~~-gaDyI~ld~~~~ 209 (265)
T TIGR00078 168 VKRARAAAPFALKIEVEVESLEEAEEAAEA-GADIIMLDNMKP 209 (265)
T ss_pred HHHHHHhCCCCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCH
Confidence 344444 44 5678999999999999986 999999988444
No 347
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=68.92 E-value=33 Score=33.59 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHcCceEEEE--eccCCCCCC---CHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSI--LTDEKYFKG---SFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISV--LTD~~fF~G---S~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
+-.+||+.+.+.|...|=| ..+++||.. ..+.++.+++. ++.+..|+ -..-.|..|..+|.|.|-+-..+
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~----~~~~~ie~A~~~g~~~v~i~~~~ 102 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT----PNLKGLEAALAAGADEVAVFASA 102 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe----cCHHHHHHHHHcCCCEEEEEEec
Confidence 4568999999999999977 456776755 44555555431 12223333 25677788999999987766544
Q ss_pred CC--------------HHHHHHHHHHHHHcCCcEEE--------EeC---CHHHHHH----HhccCCCeEEEeeCCCCCc
Q 018446 272 LP--------------DLDIRYMTKICKLLGLTALV--------EVH---DEREMDR----VLGIEGIELIGINNRNLET 322 (355)
Q Consensus 272 L~--------------~~~L~~L~~~A~~LGLeaLV--------EVH---~~eELer----Al~l~ga~iIGINNRdL~T 322 (355)
=+ -+.+...+++|++.|+.+.+ |.+ +.+.+.+ +.++ |++.|.+-.-.
T Consensus 103 s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~l~DT~--- 178 (287)
T PRK05692 103 SEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL-GCYEISLGDTI--- 178 (287)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCcEEEecccc---
Confidence 11 12477899999999998752 222 4444433 3343 78777664321
Q ss_pred cccChhhHHhhhcc
Q 018446 323 FEVDNSNTKKLLEG 336 (355)
Q Consensus 323 fevDl~~t~~L~~~ 336 (355)
=-..+....+|...
T Consensus 179 G~~~P~~v~~lv~~ 192 (287)
T PRK05692 179 GVGTPGQVRAVLEA 192 (287)
T ss_pred CccCHHHHHHHHHH
Confidence 11235555555544
No 348
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=68.76 E-value=12 Score=35.92 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=42.4
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeec
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLC 244 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLr 244 (355)
++..||+=+-..| ..+..++|+.+++.||+++.|.. |.||..+. +++..|.++ +++||+-
T Consensus 66 ~~~~vi~gv~~~s--------~~~~i~~a~~a~~~Gad~v~v~p-P~y~~~~~~~i~~~~~~i~~~-~~~pi~l 129 (285)
T TIGR00674 66 GRVPVIAGTGSNA--------TEEAISLTKFAEDVGADGFLVVT-PYYNKPTQEGLYQHFKAIAEE-VDLPIIL 129 (285)
T ss_pred CCCeEEEeCCCcc--------HHHHHHHHHHHHHcCCCEEEEcC-CcCCCCCHHHHHHHHHHHHhc-CCCCEEE
Confidence 4556887762221 23678899999999999999987 77887664 455566664 6788763
No 349
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=68.55 E-value=20 Score=35.26 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCC--CCCC----CHHHHHHHHhcCCCCCeeccc-cccCHHHHHHHHHcCCcchHHH
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEK--YFKG----SFENLEAVRSAGVKCPLLCKE-FIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~--fF~G----S~edL~~VR~a~v~lPVLrKD-FIIdpyQI~eAr~~GADAVLLI 268 (355)
..||.+..+..++.|+++|.|-.-+- .+.+ +++.|+.+++. +++|+..-= =.|++-|+.++...|++.|-++
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~-~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV-VHIPLVLHGGSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHcCCcEEEEh
Confidence 35888766666677999999922211 1233 68999999986 899976543 4688899999999999999988
Q ss_pred HhcCC
Q 018446 269 AAVLP 273 (355)
Q Consensus 269 aaiL~ 273 (355)
.++..
T Consensus 231 T~i~~ 235 (281)
T PRK06806 231 TATFN 235 (281)
T ss_pred HHHHH
Confidence 88875
No 350
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.51 E-value=4.6 Score=39.74 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=28.6
Q ss_pred CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
...-|||.|.+|+..|+++ |+++|...|-+.+
T Consensus 183 ~kIeVEv~~leea~~a~~a-gaDiI~LDn~~~e 214 (278)
T PRK08385 183 KVVEVEVESLEDALKAAKA-GADIIMLDNMTPE 214 (278)
T ss_pred CcEEEEeCCHHHHHHHHHc-CcCEEEECCCCHH
Confidence 6799999999999999997 9999999988543
No 351
>PRK08005 epimerase; Validated
Probab=68.36 E-value=22 Score=33.65 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=77.2
Q ss_pred cCCCCCCCCCC-CCHHHHHHHHHHcCceEEEEeccCCCC----CCCHHHHHHHHhcCCCCCeeccccccCHH-HHHHHHH
Q 018446 186 ASPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYART 259 (355)
Q Consensus 186 aSPSkG~I~~~-~Dp~~iA~~Ye~~GAaaISVLTD~~fF----~GS~edL~~VR~a~v~lPVLrKDFIIdpy-QI~eAr~ 259 (355)
-|||- ++.| .+..+..+.++++|++-|=+=.--..| .=+.+.++.+|+. +++|+=..=-+-+|. .|.+-..
T Consensus 3 i~pSi--l~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~-t~~~~DvHLMv~~P~~~i~~~~~ 79 (210)
T PRK08005 3 LHPSL--ASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ-TRHPLSFHLMVSSPQRWLPWLAA 79 (210)
T ss_pred EEeeh--hhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc-CCCCeEEEeccCCHHHHHHHHHH
Confidence 35663 4443 234456678888899887775444344 3457889999985 677732222223344 4556667
Q ss_pred cCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhc
Q 018446 260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLG 306 (355)
Q Consensus 260 ~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~ 306 (355)
+|||.|.+-+-.. ..+.++++..+++|+.+=+=+. ..+.++..+.
T Consensus 80 ~gad~It~H~Ea~--~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 80 IRPGWIFIHAESV--QNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred hCCCEEEEcccCc--cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH
Confidence 8999998888764 3678899999999999888775 4555665554
No 352
>PRK00077 eno enolase; Provisional
Probab=68.27 E-value=31 Score=35.57 Aligned_cols=124 Identities=14% Similarity=0.191 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHcCc-eEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeecccc-ccCHHHHHHHHHcC-CcchHHHHhc
Q 018446 197 FDPVEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEF-IVDAWQIYYARTKG-ADAVLLIAAV 271 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GA-aaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKDF-IIdpyQI~eAr~~G-ADAVLLIaai 271 (355)
+++.+.+..|.+.=. -.|-.+ |..+-..+++.+..+++. + ++||.--|. .-.++++..+...| +|+|++=+.-
T Consensus 261 ~s~~e~~~~~~~l~e~y~i~~i-EdPl~~~D~~g~~~L~~~-~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~ 338 (425)
T PRK00077 261 LTSEEMIDYLAELVDKYPIVSI-EDGLDENDWEGWKLLTEK-LGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQ 338 (425)
T ss_pred CCHHHHHHHHHHHHhhCCcEEE-EcCCCCccHHHHHHHHHh-cCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccc
Confidence 577777776665311 113333 556778899999999985 6 699999995 45699999988766 5777664443
Q ss_pred C-CHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446 272 L-PDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGINNRNLETFEVD 326 (355)
Q Consensus 272 L-~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGINNRdL~TfevD 326 (355)
. +-.+..+..++|+..|+.+++ -...+.+...+.++ -+|.+..-+++..+-
T Consensus 339 ~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~l----ava~~~~~ik~G~~~ 391 (425)
T PRK00077 339 IGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADL----AVATNAGQIKTGSLS 391 (425)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHH----HHHhCCccccCCCCc
Confidence 3 345778889999999999887 33334444444443 246666667777654
No 353
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.63 E-value=90 Score=29.05 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCC------HHHHHHHhccCCCeEEEee
Q 018446 275 LDIRYMTKICKLLGLTALVEVHD------EREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVEVH~------~eELerAl~l~ga~iIGIN 316 (355)
+.|.++.++|.+.|+...+|-|. .+++.+.++.-+.+-+|++
T Consensus 133 ~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~ 180 (284)
T PRK13210 133 EGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVY 180 (284)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCCceeEE
Confidence 36888999999999999999973 3566665543244556765
No 354
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=67.60 E-value=8.3 Score=37.57 Aligned_cols=112 Identities=24% Similarity=0.229 Sum_probs=72.4
Q ss_pred HHHHHHHHcCceEEEEecc----CCCCCC-----CHHHHHHHHhcCCCCCeeccccccC--HHHHHHHHHcCCcchHHHH
Q 018446 201 EIARSYEKGGAACLSILTD----EKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVD--AWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD----~~fF~G-----S~edL~~VR~a~v~lPVLrKDFIId--pyQI~eAr~~GADAVLLIa 269 (355)
++|+.-+++||+++-+|-- -+--+| +...++.+.++ |++||+.|=-|=| +-||.|| .|-|-|= =-
T Consensus 32 eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~a-VsiPVMAk~RiGHFVEAQIlE~--l~vDYiD-ES 107 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNA-VSIPVMAKVRIGHFVEAQILEA--LGVDYID-ES 107 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHh-ccchhhhhhhhhhhhHHHHHHH--hccCccc-hh
Confidence 6899999999999887752 222222 57888999986 9999999988744 7799997 4666542 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
.+|++.+-...++ -+.+-.--+.-..|.-|.-|-+. +||-+|-..+-
T Consensus 108 Evlt~AD~~hhI~-KhnFkvPFvCG~rdlGEALRRI~-EGAAMIRtkGe 154 (296)
T KOG1606|consen 108 EVLTPADWDHHIE-KHNFKVPFVCGCRDLGEALRRIR-EGAAMIRTKGE 154 (296)
T ss_pred hhcccccccchhh-hhcCcCceeeccccHHHHHHHHh-hchhhheeccc
Confidence 2333322222211 12334444556778888777776 58888776653
No 355
>PRK06801 hypothetical protein; Provisional
Probab=67.50 E-value=1.3e+02 Score=29.71 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=74.3
Q ss_pred CCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH----HHHHHHHHHHcCCcEEEEe-----------------
Q 018446 238 VKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (355)
Q Consensus 238 v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~----L~~L~~~A~~LGLeaLVEV----------------- 295 (355)
.++| .|.=|=.-+.-.+.+|...|.+.|.+-.+-|+.++ .+++.++|+.+|+.+=.|+
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~ 152 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADS 152 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCccc
Confidence 4678 57778888888899999999999999999999543 4557788999998652332
Q ss_pred --C-CHHHHHHHhccCCCeEEEeeCCCCCcc-----ccChhhHHhhhcc
Q 018446 296 --H-DEREMDRVLGIEGIELIGINNRNLETF-----EVDNSNTKKLLEG 336 (355)
Q Consensus 296 --H-~~eELerAl~l~ga~iIGINNRdL~Tf-----evDl~~t~~L~~~ 336 (355)
+ +.+|+.+..+..|++.++|..-+-++. ++|++...++...
T Consensus 153 ~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~ 201 (286)
T PRK06801 153 AKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ 201 (286)
T ss_pred ccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh
Confidence 2 337888877434999999977766663 3677777777554
No 356
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=67.49 E-value=4 Score=37.18 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.5
Q ss_pred EEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 291 ALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 291 aLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
..|||+|.+|++.|+++ |+++|...|-+..
T Consensus 83 I~VEv~~~ee~~ea~~~-g~d~I~lD~~~~~ 112 (169)
T PF01729_consen 83 IEVEVENLEEAEEALEA-GADIIMLDNMSPE 112 (169)
T ss_dssp EEEEESSHHHHHHHHHT-T-SEEEEES-CHH
T ss_pred EEEEcCCHHHHHHHHHh-CCCEEEecCcCHH
Confidence 89999999999999997 9999999988553
No 357
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=67.45 E-value=18 Score=34.73 Aligned_cols=77 Identities=21% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHc----CceEEEEeccCCCCCCC---HHHHHHHHhcCCCC-CeeccccccCH-HHHHHHHHcCCcchH
Q 018446 196 DFDPVEIARSYEKG----GAACLSILTDEKYFKGS---FENLEAVRSAGVKC-PLLCKEFIVDA-WQIYYARTKGADAVL 266 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~----GAaaISVLTD~~fF~GS---~edL~~VR~a~v~l-PVLrKDFIIdp-yQI~eAr~~GADAVL 266 (355)
.+|..++|..|.-+ |-. -|.+|...-.|+ .+.++.+|+. +++ ||+. -|.|.. -|+.++..+|||+|.
T Consensus 136 ~~~~~~~~~~~~lA~~~~g~~--~vYle~gs~~g~~~~~e~I~~v~~~-~~~~pviv-GGGIrs~e~a~~~l~~GAD~VV 211 (232)
T PRK04169 136 PLDKPDIAAYAALAAEYLGMP--IVYLEYGGGAGDPVPPEMVKAVKKA-LDITPLIY-GGGIRSPEQARELMAAGADTIV 211 (232)
T ss_pred CCChHHHHHHHHHHHHHcCCC--eEEEECCCCCCCCCCHHHHHHHHHh-cCCCcEEE-ECCCCCHHHHHHHHHhCCCEEE
Confidence 56788888888765 433 233343333466 8999999986 777 9987 665555 588888999999998
Q ss_pred HHHhcCCHHH
Q 018446 267 LIAAVLPDLD 276 (355)
Q Consensus 267 LIaaiL~~~~ 276 (355)
.=-++..+-+
T Consensus 212 VGSai~~d~~ 221 (232)
T PRK04169 212 VGNIIEEDPK 221 (232)
T ss_pred EChHHhhCHH
Confidence 8666665433
No 358
>PLN02979 glycolate oxidase
Probab=67.43 E-value=14 Score=38.03 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=49.5
Q ss_pred HHHHHHHHcCceEEEEeccC----CCCCCCHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 201 EIARSYEKGGAACLSILTDE----KYFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~----~fF~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
+-|+...+.|+++|-|=.-. .+...+.+-|.+++++ ..++||+.-==|-++..|..|.++|||+|.+=-
T Consensus 235 ~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 235 EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 45555666799998664321 1112337788888765 235899988889999999999999999997633
No 359
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=67.13 E-value=58 Score=31.77 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc-----
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV----- 271 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai----- 271 (355)
-||+..|..-+.+||..|-|---+.--.=..+|+..+|+. ++.| |.=.--..+-.+.-|...-.|.|.|..--
T Consensus 22 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~-lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 22 PDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLREL-VKTP-LNLEMAPTEEMVDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH--SSE-EEEEEESSHHHHHHHHHH--SEEEEE--SGGGBS
T ss_pred CCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHH-cccC-EEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcC
Confidence 3899999999999999999988777778889999999985 7888 66666778888888999999888876532
Q ss_pred -------C-CHHHHHHHHHHHHHcCCcEEEEe-CCHHHHHHHhccCCCeEEEee
Q 018446 272 -------L-PDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 272 -------L-~~~~L~~L~~~A~~LGLeaLVEV-H~~eELerAl~l~ga~iIGIN 316 (355)
- ..+.|+..++..+..|..+=+=+ -+.+.++.|.++ ||+.|=+.
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~-Gad~VELh 152 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKEL-GADRVELH 152 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T-SEEEEE
T ss_pred CCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHc-CCCEEEEe
Confidence 1 13577888888888887765554 356777777776 77776553
No 360
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=67.10 E-value=23 Score=29.42 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccC-CCeEEEeeCCCCCcc
Q 018446 250 DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIE-GIELIGINNRNLETF 323 (355)
Q Consensus 250 dpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~-ga~iIGINNRdL~Tf 323 (355)
-..|+..|...|---.++|+.=.++...+.+..+|...|...+.-+.|.+||-+|.... ++.++||.+.++..+
T Consensus 20 G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~~~~~vaI~D~G~a~~ 94 (99)
T PRK01018 20 GSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPFTVSALAIVDPGESDI 94 (99)
T ss_pred cHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCCCEEEEEEecCCHHHH
Confidence 34456666555654555566667777788899999999987766668999999999763 357999998876443
No 361
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.02 E-value=15 Score=36.28 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=90.7
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCce----EEE---EeccCC-CCCCCHHH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA----CLS---ILTDEK-YFKGSFEN 229 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAa----aIS---VLTD~~-fF~GS~ed 229 (355)
..++.|..+++.. +....|+.=.|..|-- | -...+| .+ -||+. .|| .+-|.+ .|.|-.+-
T Consensus 105 T~T~~~v~~~~~~----~~~~~i~~TRKt~Pg~---R---~l~k~A-v~-~GGg~~HR~gLsd~vLikdnHi~~~~i~~a 172 (278)
T PRK08385 105 TETRKLVELVKAV----NPKVRVAGTRKTLPGL---R---LLDKKA-II-IGGGEPHRFSLSDAILIKDNHLALVPLEEA 172 (278)
T ss_pred HHHHHHHHHHHhc----CCCEEEEEeCCCChhh---h---HHHHHH-HH-hcCCcccCCCCcccEEEccCHHHHHHHHHH
Confidence 3467888888753 2346888888888852 2 122222 22 45554 333 222222 12243455
Q ss_pred HHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcC--CcEEEEeC---CHHHHHHH
Q 018446 230 LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLG--LTALVEVH---DEREMDRV 304 (355)
Q Consensus 230 L~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LG--LeaLVEVH---~~eELerA 304 (355)
+..+|+.....+|--- .=+.-|..+|..+|||.|+| .=++++++++..++.+..| -.+++|+. |.+.++..
T Consensus 173 v~~~r~~~~~~kIeVE--v~~leea~~a~~agaDiI~L--Dn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~y 248 (278)
T PRK08385 173 IRRAKEFSVYKVVEVE--VESLEDALKAAKAGADIIML--DNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEY 248 (278)
T ss_pred HHHHHHhCCCCcEEEE--eCCHHHHHHHHHcCcCEEEE--CCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHH
Confidence 6666653222221100 02678999999999997765 3457889999999888887 46899998 78888888
Q ss_pred hccCCCeEEEeeC
Q 018446 305 LGIEGIELIGINN 317 (355)
Q Consensus 305 l~l~ga~iIGINN 317 (355)
... |+++|.+-.
T Consensus 249 A~t-GvD~Is~ga 260 (278)
T PRK08385 249 AKL-DVDVISLGA 260 (278)
T ss_pred HHc-CCCEEEeCh
Confidence 876 999998754
No 362
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=66.99 E-value=11 Score=36.41 Aligned_cols=58 Identities=28% Similarity=0.340 Sum_probs=42.2
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCee
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLL 243 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVL 243 (355)
++..||+=+- .+ ..+..++|+.+++.||+|+.|.. |.||..|. ++...|.++ +++||+
T Consensus 73 g~~pvi~gv~-~~--------t~~ai~~a~~a~~~Gadav~~~p-P~y~~~s~~~i~~~f~~v~~a-~~~pvi 134 (296)
T TIGR03249 73 GKVPVYTGVG-GN--------TSDAIEIARLAEKAGADGYLLLP-PYLINGEQEGLYAHVEAVCES-TDLGVI 134 (296)
T ss_pred CCCcEEEecC-cc--------HHHHHHHHHHHHHhCCCEEEECC-CCCCCCCHHHHHHHHHHHHhc-cCCCEE
Confidence 4567888772 11 23678999999999999997754 77877664 556677775 788865
No 363
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=66.85 E-value=51 Score=31.86 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc------
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV------ 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai------ 271 (355)
+-.++++...+.|...|-|=. |..=.+..+..+.+++.... |-+.-=.......|..|..+|+|.|-+...+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~-~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~ 100 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLK-AKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLRE 100 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCC-CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHH
Confidence 446888889999998887753 44434444555555432111 2222223456677899999999987664432
Q ss_pred --CC------HHHHHHHHHHHHHcCCcEEEEe-----CCHHHHH----HHhccCCCeEEEeeCCCCCccc-cChhhHHhh
Q 018446 272 --LP------DLDIRYMTKICKLLGLTALVEV-----HDEREMD----RVLGIEGIELIGINNRNLETFE-VDNSNTKKL 333 (355)
Q Consensus 272 --L~------~~~L~~L~~~A~~LGLeaLVEV-----H~~eELe----rAl~l~ga~iIGINNRdL~Tfe-vDl~~t~~L 333 (355)
+. -+.+.+++++|++.|+.+-+-+ .+.+++. ++.++ |++-|.+-. |+- ..+....++
T Consensus 101 ~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~-g~~~i~l~D----t~G~~~P~~v~~~ 175 (262)
T cd07948 101 ASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKL-GVNRVGIAD----TVGIATPRQVYEL 175 (262)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHc-CCCEEEECC----cCCCCCHHHHHHH
Confidence 11 1345667799999999877766 4455553 33443 676665532 222 335555555
Q ss_pred hcc
Q 018446 334 LEG 336 (355)
Q Consensus 334 ~~~ 336 (355)
...
T Consensus 176 ~~~ 178 (262)
T cd07948 176 VRT 178 (262)
T ss_pred HHH
Confidence 443
No 364
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=66.83 E-value=23 Score=33.31 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHcCceEE---EEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc
Q 018446 195 EDFDPVEIARSYEKGGAACL---SILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 195 ~~~Dp~~iA~~Ye~~GAaaI---SVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai 271 (355)
...+|.++++.|++. +..| .+-+|..-.+-+++.+..+++. +++||..--=|-+.-++.+...+|||+|++=-++
T Consensus 144 ~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 144 DFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVASAL 221 (233)
T ss_pred CcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHH
Confidence 456899999999988 7644 4444555555667888999885 8999999999999999999999999999875555
Q ss_pred CC
Q 018446 272 LP 273 (355)
Q Consensus 272 L~ 273 (355)
..
T Consensus 222 ~~ 223 (233)
T cd04723 222 HD 223 (233)
T ss_pred Hc
Confidence 43
No 365
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=66.82 E-value=19 Score=36.56 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCceEEEEecc---------CCCCC--CC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-Ccch
Q 018446 199 PVEIARSYEKGGAACLSILTD---------EKYFK--GS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAV 265 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD---------~~fF~--GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAV 265 (355)
..++++..++.|++.|+|-.- +..|. |. .+..+.+|++ +++||+.---|-++-+..++...| ||.|
T Consensus 254 ~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 254 GLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEV-VDVPVIMAGRMEDPELASEAINEGIADMI 332 (382)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 347889999999999988421 11121 22 3556788886 899999999999999999999987 9999
Q ss_pred HHHHhcCCHHHH
Q 018446 266 LLIAAVLPDLDI 277 (355)
Q Consensus 266 LLIaaiL~~~~L 277 (355)
-+==++|.+-+|
T Consensus 333 ~~gR~~ladP~l 344 (382)
T cd02931 333 SLGRPLLADPDV 344 (382)
T ss_pred eechHhHhCccH
Confidence 887777766554
No 366
>PRK08227 autoinducer 2 aldolase; Validated
Probab=66.69 E-value=6.7 Score=38.37 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHcCCcchHHHHhcCCHH------HHHHHHHHHHHcCCcEEEEe------CCHHH-----HHHHhccCCCeEEEee
Q 018446 254 IYYARTKGADAVLLIAAVLPDL------DIRYMTKICKLLGLTALVEV------HDERE-----MDRVLGIEGIELIGIN 316 (355)
Q Consensus 254 I~eAr~~GADAVLLIaaiL~~~------~L~~L~~~A~~LGLeaLVEV------H~~eE-----LerAl~l~ga~iIGIN 316 (355)
+.+|..+|||||-.-+-+-++. +|..+.+.|+++||-.|... .+..+ ...+.++ ||+||-++
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaEL-GADiVK~~ 178 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEM-GAQIIKTY 178 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHH-cCCEEecC
Confidence 7799999999998877776643 44555678999999777622 23223 2234566 89999887
Q ss_pred C
Q 018446 317 N 317 (355)
Q Consensus 317 N 317 (355)
=
T Consensus 179 y 179 (264)
T PRK08227 179 Y 179 (264)
T ss_pred C
Confidence 5
No 367
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=66.62 E-value=34 Score=33.74 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=30.1
Q ss_pred HHHHHHHHcCceEEEEec----------------cCCCCCCCH--------HHHHHHHhcCC--CCCeecc
Q 018446 201 EIARSYEKGGAACLSILT----------------DEKYFKGSF--------ENLEAVRSAGV--KCPLLCK 245 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLT----------------D~~fF~GS~--------edL~~VR~a~v--~lPVLrK 245 (355)
+-|+...++|+++|-+.. -..-|+||+ +-+..||++ + +.||..|
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~-vG~d~~v~vr 227 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV-WPEDKPLFVR 227 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH-cCCCceEEEE
Confidence 445666778999996642 222468995 667888875 5 6787766
No 368
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=66.59 E-value=1.4e+02 Score=29.44 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=73.8
Q ss_pred CCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH----HHHHHHHHHcCCcEEE-----------------Ee
Q 018446 238 VKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI----RYMTKICKLLGLTALV-----------------EV 295 (355)
Q Consensus 238 v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L----~~L~~~A~~LGLeaLV-----------------EV 295 (355)
.++| .|.=|=.-|.-++.+|...|.+.|.+=.+-++.++. +++.++|+..|...=. -+
T Consensus 73 ~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~ 152 (281)
T PRK06806 73 AKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLL 152 (281)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccccee
Confidence 4678 577888888889999999999999999999988654 4567888887654211 16
Q ss_pred CCHHHHHHHhccCCCeEEEeeCCCCCcc-----ccChhhHHhhhcc
Q 018446 296 HDEREMDRVLGIEGIELIGINNRNLETF-----EVDNSNTKKLLEG 336 (355)
Q Consensus 296 H~~eELerAl~l~ga~iIGINNRdL~Tf-----evDl~~t~~L~~~ 336 (355)
||.+|+.++.+..|++.+++..-+.+.. .++++.-.++...
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~ 198 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV 198 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh
Confidence 9999999987534999999965555432 3566666666543
No 369
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=66.53 E-value=39 Score=35.13 Aligned_cols=126 Identities=24% Similarity=0.157 Sum_probs=80.8
Q ss_pred CCceEEeEeeecCCCC--CCCCC-----CCCHHHHHHHHH-HcCceEEEEe---ccCCCCCCCHHHHHHH----HhcCCC
Q 018446 175 GLPALIAEVKKASPSR--GILRE-----DFDPVEIARSYE-KGGAACLSIL---TDEKYFKGSFENLEAV----RSAGVK 239 (355)
Q Consensus 175 g~~aVIAEvKRaSPSk--G~I~~-----~~Dp~~iA~~Ye-~~GAaaISVL---TD~~fF~GS~edL~~V----R~a~v~ 239 (355)
++|.|-.||--.-|+. ..++. .-||++.|+.++ ..||+.|.+- |||.-+.-|.+...++ -++ ++
T Consensus 110 npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a-v~ 188 (389)
T TIGR00381 110 NPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA-VD 188 (389)
T ss_pred CCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHh-CC
Confidence 3456666776654443 11211 248999999997 7899999875 5666666666644433 333 78
Q ss_pred CCeec---cccccCHHHHHHHHHcCCc-chHHHHhcCCHHHHHHHHHHHHHcCCcEEEEe-CCHHHHH
Q 018446 240 CPLLC---KEFIVDAWQIYYARTKGAD-AVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-HDEREMD 302 (355)
Q Consensus 240 lPVLr---KDFIIdpyQI~eAr~~GAD-AVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEV-H~~eELe 302 (355)
+|++- .+---|+--+..|...-++ -.||..+-+++ ..+.+..+|+.+|--.++.. .+...+.
T Consensus 189 vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~-Ny~~ia~lAk~yg~~Vvv~s~~Din~ak 255 (389)
T TIGR00381 189 VPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL-DYEKIANAAKKYGHVVLSWTIMDINMQK 255 (389)
T ss_pred CCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh-hHHHHHHHHHHhCCeEEEEcCCcHHHHH
Confidence 99731 1222255555555555555 46666666655 89999999999999888887 4444433
No 370
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=66.46 E-value=19 Score=34.48 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=54.9
Q ss_pred CCCHHHH---HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC--HH-----HHHHHHHcCCcch
Q 018446 196 DFDPVEI---ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD--AW-----QIYYARTKGADAV 265 (355)
Q Consensus 196 ~~Dp~~i---A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId--py-----QI~eAr~~GADAV 265 (355)
.+++..+ ++...+.||+-|- ..|.|+.+.|+.+.+. ..+||..-= +|+ .+ .+.++..+||+++
T Consensus 156 ~~~~~~i~~a~~~a~e~GAD~vK-----t~~~~~~~~l~~~~~~-~~ipV~a~G-Gi~~~~~~~~l~~v~~~~~aGA~Gi 228 (267)
T PRK07226 156 EYDPEVVAHAARVAAELGADIVK-----TNYTGDPESFREVVEG-CPVPVVIAG-GPKTDTDREFLEMVRDAMEAGAAGV 228 (267)
T ss_pred CccHHHHHHHHHHHHHHCCCEEe-----eCCCCCHHHHHHHHHh-CCCCEEEEe-CCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 3455443 3445567999983 3377899999999874 689986544 233 33 3677789999999
Q ss_pred HHHHhcCCHHHHHHHH
Q 018446 266 LLIAAVLPDLDIRYMT 281 (355)
Q Consensus 266 LLIaaiL~~~~L~~L~ 281 (355)
...-+++..++...++
T Consensus 229 s~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 229 AVGRNVFQHEDPEAIT 244 (267)
T ss_pred ehhhhhhcCCCHHHHH
Confidence 9999998765544444
No 371
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=66.38 E-value=1.1e+02 Score=28.48 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=72.7
Q ss_pred CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC-CCHHHHHHHHhcCCCCCee--c-cccccC-
Q 018446 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAGVKCPLL--C-KEFIVD- 250 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~edL~~VR~a~v~lPVL--r-KDFIId- 250 (355)
+..+..|+|- |.. .+. -...++....+.|...--..-++-.|. =+.+.|..+|+...++|+. . .++.-.
T Consensus 111 ~~~l~IEiK~--~~~---~~~-~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~ 184 (256)
T cd08601 111 RANYYIETKS--PDL---YPG-MEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAET 184 (256)
T ss_pred CceEEEEeeC--CCC---CCC-HHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccccc
Confidence 3578999993 321 011 124677777777753100000111222 2567888888754566633 2 222110
Q ss_pred HHH-HHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEee
Q 018446 251 AWQ-IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 251 pyQ-I~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGIN 316 (355)
.-+ +..++. +|+++-.-...+. ..+++.++..|+.+.+ -|.+.+++++.++. |++.|--|
T Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~wTvn~~~~~~~l~~~-Gvd~IiTD 246 (256)
T cd08601 185 YDKWLDEIKE-YAIGIGPSIADAD----PWMVHLIHKKGLLVHPYTVNEKADMIRLINW-GVDGMFTN 246 (256)
T ss_pred chhHHHHHHh-cCeEeCCchhhcC----HHHHHHHHHCCCEEEEEecCCHHHHHHHHhc-CCCEEEeC
Confidence 011 222333 7766543223333 4788999999999877 57889999999997 88776544
No 372
>PRK15447 putative protease; Provisional
Probab=66.33 E-value=14 Score=36.14 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=21.2
Q ss_pred HcCCcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhc
Q 018446 259 TKGADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306 (355)
Q Consensus 259 ~~GADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~ 306 (355)
.+|+...+-+-.++ .++++..+.++... |.+ .|.|.|...+..+.+
T Consensus 59 ~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~-~v~v~d~g~l~~~~e 105 (301)
T PRK15447 59 AAGKEVVLSTLALVEAPSELKELRRLVEN-GEF-LVEANDLGAVRLLAE 105 (301)
T ss_pred HcCCEEEEEecccccCHHHHHHHHHHHhc-CCC-EEEEeCHHHHHHHHh
Confidence 44554444444443 24455554443333 322 355555555555544
No 373
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.21 E-value=59 Score=31.67 Aligned_cols=119 Identities=15% Similarity=0.075 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHc---CceEEEEeccCCC------CCCCHHHH----HHHHhcCCCCCeecc---ccccCHHHHHHH----
Q 018446 198 DPVEIARSYEKG---GAACLSILTDEKY------FKGSFENL----EAVRSAGVKCPLLCK---EFIVDAWQIYYA---- 257 (355)
Q Consensus 198 Dp~~iA~~Ye~~---GAaaISVLTD~~f------F~GS~edL----~~VR~a~v~lPVLrK---DFIIdpyQI~eA---- 257 (355)
|..+.++..++. ||++|-++.--.. ++-+.+.+ +.+|++ +++||..| ++ |.-++.++
T Consensus 104 ~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~-~~iPv~vKl~p~~--~~~~~~~~a~~l 180 (294)
T cd04741 104 DIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA-YSIPVGVKTPPYT--DPAQFDTLAEAL 180 (294)
T ss_pred HHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEEEEeCCCC--CHHHHHHHHHHH
Confidence 344445545443 7899888654222 33244444 445664 78999777 44 33333322
Q ss_pred HHc--CCcchHHHHhc--------------C---------C-----HHHHHHHHHHHHHcC--CcEEE--EeCCHHHHHH
Q 018446 258 RTK--GADAVLLIAAV--------------L---------P-----DLDIRYMTKICKLLG--LTALV--EVHDEREMDR 303 (355)
Q Consensus 258 r~~--GADAVLLIaai--------------L---------~-----~~~L~~L~~~A~~LG--LeaLV--EVH~~eELer 303 (355)
... |||+|.+|=.+ + + +.-|+...++.+.++ +..+- -|+|.+++.+
T Consensus 181 ~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e 260 (294)
T cd04741 181 NAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFR 260 (294)
T ss_pred hccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHH
Confidence 235 88988864222 1 1 112344455566665 33332 5899999999
Q ss_pred HhccCCCeEEEeeCCCC
Q 018446 304 VLGIEGIELIGINNRNL 320 (355)
Q Consensus 304 Al~l~ga~iIGINNRdL 320 (355)
.+.+ ||+.+.|----+
T Consensus 261 ~l~a-GA~~Vqv~ta~~ 276 (294)
T cd04741 261 MRLA-GASAVQVGTALG 276 (294)
T ss_pred HHHc-CCCceeEchhhh
Confidence 9986 999999864433
No 374
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.17 E-value=20 Score=36.43 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCceEEEEecc---CCCCCCCHHH-HHHHHhcCCCCCeeccccc------------------cCHHHHHH
Q 018446 199 PVEIARSYEKGGAACLSILTD---EKYFKGSFEN-LEAVRSAGVKCPLLCKEFI------------------VDAWQIYY 256 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD---~~fF~GS~ed-L~~VR~a~v~lPVLrKDFI------------------IdpyQI~e 256 (355)
...+++.+++.|++.|.|-+- +..|.|..-+ ...+|++ +++||+.--=| .++-+..+
T Consensus 237 ~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~ 315 (361)
T cd04747 237 LEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLE 315 (361)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHH-cCCCEEEECCcccccccccccccccccccCCHHHHHH
Confidence 346677789999999999774 3456665444 4568885 89999987655 58889999
Q ss_pred HHHcC-CcchHHHHhcCCHHHH
Q 018446 257 ARTKG-ADAVLLIAAVLPDLDI 277 (355)
Q Consensus 257 Ar~~G-ADAVLLIaaiL~~~~L 277 (355)
+...| ||.|-+==.+|.+-++
T Consensus 316 ~l~~g~~D~V~~gR~~iadP~~ 337 (361)
T cd04747 316 RLERGEFDLVAVGRALLSDPAW 337 (361)
T ss_pred HHHCCCCCeehhhHHHHhCcHH
Confidence 99876 9999987777776544
No 375
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=66.12 E-value=8.1 Score=36.46 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=70.9
Q ss_pred HHHHHcCceEEEEeccCCCCC-CCHH----HHHHHHhcCCCCCe---eccccccCHHHHH----HHHHcCCcchHHHHhc
Q 018446 204 RSYEKGGAACLSILTDEKYFK-GSFE----NLEAVRSAGVKCPL---LCKEFIVDAWQIY----YARTKGADAVLLIAAV 271 (355)
Q Consensus 204 ~~Ye~~GAaaISVLTD~~fF~-GS~e----dL~~VR~a~v~lPV---LrKDFIIdpyQI~----eAr~~GADAVLLIaai 271 (355)
+...+.||+.|.|.-+-.+|. |.++ ++..++++.-.+|+ |-.-. ++..||. .+..+|||-|---...
T Consensus 77 ~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTsTGf 155 (211)
T TIGR00126 77 KEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL-LTDEEIRKACEICIDAGADFVKTSTGF 155 (211)
T ss_pred HHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 344467999999998865544 6654 67777764213442 22222 3333433 2567899987665333
Q ss_pred C----CHHHHHHHHHHHH-HcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 272 L----PDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 272 L----~~~~L~~L~~~A~-~LGLeaLVEVH~~eELerAl~l~ga~iIGINN 317 (355)
- +.++.+.|.+... ..|.-+-==++|.+++...+.+ |++.||..+
T Consensus 156 ~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~a-Ga~riGts~ 205 (211)
T TIGR00126 156 GAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEA-GASRIGASA 205 (211)
T ss_pred CCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-hhHHhCcch
Confidence 2 3456666666654 4566666678899999998887 898888753
No 376
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=66.09 E-value=32 Score=33.17 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCCCCeeccccccC--HHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHH
Q 018446 228 ENLEAVRSAGVKCPLLCKEFIVD--AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (355)
Q Consensus 228 edL~~VR~a~v~lPVLrKDFIId--pyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELe 302 (355)
+-++.+|+...+-+|++.==+.| .|....|..+|||.+..+.+ -++..++..++.|+++|.+..+|.- |.++..
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~-A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~ 123 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGA-ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA 123 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEec-CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence 45666776556778888655555 46777899999999766544 4677999999999999999988854 555555
Q ss_pred HHhc-cCCCeEEEe-eCCCCCccccC-----hhhHHhhhc
Q 018446 303 RVLG-IEGIELIGI-NNRNLETFEVD-----NSNTKKLLE 335 (355)
Q Consensus 303 rAl~-l~ga~iIGI-NNRdL~TfevD-----l~~t~~L~~ 335 (355)
+=++ + |++++.+ -+||.++.-.+ +++..++..
T Consensus 124 ~~l~~~-gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~ 162 (217)
T COG0269 124 KWLKEL-GVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD 162 (217)
T ss_pred HHHHHh-CCCEEEEEecccHhhcCCCccHHHHHHHHHhhc
Confidence 5555 5 7777666 47888855444 345555554
No 377
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=65.54 E-value=25 Score=36.29 Aligned_cols=123 Identities=13% Similarity=0.215 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHc--CceEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeecccccc-CHHHHHHHHHcC-CcchHHHHh
Q 018446 197 FDPVEIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEFIV-DAWQIYYARTKG-ADAVLLIAA 270 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~--GAaaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKDFII-dpyQI~eAr~~G-ADAVLLIaa 270 (355)
+++.+..+.|.+. ... |- .-|..+-..+++.+..+++. + ++||.--|..+ .++++..+...| +|+|++=+.
T Consensus 262 ~s~~eai~~~~~lle~~~-i~-~iEdPl~~~D~~~~~~L~~~-~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~ 338 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKYP-IV-SIEDGLSEEDWEGWAELTKE-LGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPN 338 (425)
T ss_pred cCHHHHHHHHHHHHhcCC-cE-EEEcCCCcccHHHHHHHHHh-cCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEeccc
Confidence 5666666555531 122 32 23666788899999999985 7 89999999654 599999887765 567666433
Q ss_pred cC-CHHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446 271 VL-PDLDIRYMTKICKLLGLTALVEVH-DEREMDRVLGIEGIELIGINNRNLETFEVD 326 (355)
Q Consensus 271 iL-~~~~L~~L~~~A~~LGLeaLVEVH-~~eELerAl~l~ga~iIGINNRdL~TfevD 326 (355)
-. +-.+..+..++|+..|+.+.+-=. -+.+...+.++ -+|.+..-+++..+.
T Consensus 339 ~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~l----ava~~~~~ik~g~~~ 392 (425)
T TIGR01060 339 QIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADL----AVALNAGQIKTGSLS 392 (425)
T ss_pred ccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHH----HHHhCcCccccCCCc
Confidence 32 345778889999999999775322 33333443333 244455567777666
No 378
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=65.41 E-value=16 Score=37.49 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=49.5
Q ss_pred HHHHHHHHcCceEEEEeccCC----CCCCCHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 201 EIARSYEKGGAACLSILTDEK----YFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~----fF~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
+-|+...+.|+++|-|=.-.- +...+++-|..++++ ..++||+.-==|-++..|..|.++|||+|.+=
T Consensus 236 ~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 236 EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 308 (367)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence 455566667999987743211 112347788888764 23589998888999999999999999999763
No 379
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=65.36 E-value=15 Score=36.63 Aligned_cols=137 Identities=20% Similarity=0.315 Sum_probs=86.9
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHH--HcCc--------eEEEEeccCCCCCCCH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYE--KGGA--------ACLSILTDEKYFKGSF 227 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye--~~GA--------aaISVLTD~~fF~GS~ 227 (355)
.-++.+.++++.. ...|+.=.|..|-- .+.+.|. .||. +|+-+=..=-.+-||.
T Consensus 111 T~T~~~V~~~~~~------~~~i~~TRKT~Pgl----------R~leKyAV~~GGG~nHR~gLsDavliKDNHia~~g~i 174 (280)
T COG0157 111 TATARMVEALRGT------NVRIADTRKTTPGL----------RLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAGSI 174 (280)
T ss_pred HHHHHHHHHhhcc------CcEEEeccCCCccH----------HHHHHHHHHhcCCccccCCCcceEEehhhHHHHhccH
Confidence 3467788888764 26889888888842 2333333 2332 3444444444455665
Q ss_pred H-HHHHHHhcCCCCCeecccc-ccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHH
Q 018446 228 E-NLEAVRSAGVKCPLLCKEF-IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (355)
Q Consensus 228 e-dL~~VR~a~v~lPVLrKDF-IIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELe 302 (355)
+ -++.+|+.....|-+ +. .=..-|..+|..+|||.|+| .=++++++++.+++....| .+++|+. |++-+.
T Consensus 175 ~~Av~~aR~~~~~~~kI--EVEvesle~~~eAl~agaDiImL--DNm~~e~~~~av~~l~~~~-~~~lEaSGgIt~~ni~ 249 (280)
T COG0157 175 TEAVRRARAAAPFTKKI--EVEVESLEEAEEALEAGADIIML--DNMSPEELKEAVKLLGLAG-RALLEASGGITLENIR 249 (280)
T ss_pred HHHHHHHHHhCCCCceE--EEEcCCHHHHHHHHHcCCCEEEe--cCCCHHHHHHHHHHhccCC-ceEEEEeCCCCHHHHH
Confidence 4 455666542112211 11 12567999999999999887 4567788888888873444 8999997 566666
Q ss_pred HHhccCCCeEEEee
Q 018446 303 RVLGIEGIELIGIN 316 (355)
Q Consensus 303 rAl~l~ga~iIGIN 316 (355)
.-... |+++|.+-
T Consensus 250 ~yA~t-GVD~IS~g 262 (280)
T COG0157 250 EYAET-GVDVISVG 262 (280)
T ss_pred HHhhc-CCCEEEeC
Confidence 65664 88888764
No 380
>PRK13561 putative diguanylate cyclase; Provisional
Probab=65.05 E-value=30 Score=36.54 Aligned_cols=108 Identities=21% Similarity=0.353 Sum_probs=67.1
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc-cCHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI-VDAWQIYY 256 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI-IdpyQI~e 256 (355)
.++.||--. ..+...-......+.+.+.|.. |+ -| .||.++..+..+++. .++|+ |++ ||.--|..
T Consensus 519 ~l~lEi~E~----~~~~~~~~~~~~~~~l~~~G~~-i~--ld--dfG~g~ssl~~L~~l-~~l~~---d~lKiD~s~i~~ 585 (651)
T PRK13561 519 TLILEVTES----RRIDDPHAAVAILRPLRNAGVR-VA--LD--DFGMGYAGLRQLQHM-KSLPI---DVLKIDKMFVDG 585 (651)
T ss_pred HEEEEEchh----hhhcCHHHHHHHHHHHHHCCCE-EE--EE--CCCCCcccHHHHhhc-CCCCC---cEEEECHHHHhc
Confidence 588999433 3333222344666778887743 33 33 688666666666542 23452 222 34333322
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeE
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIEL 312 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~i 312 (355)
. ..| ..-++.++..|+++|+.+++| |.|+++++.+..+ |++.
T Consensus 586 i---~~~----------~~~v~~i~~~a~~l~i~viAegVE~~~~~~~l~~~-g~d~ 628 (651)
T PRK13561 586 L---PED----------DSMVAAIIMLAQSLNLQVIAEGVETEAQRDWLLKA-GVGI 628 (651)
T ss_pred C---CCC----------HHHHHHHHHHHHHCCCcEEEecCCCHHHHHHHHhc-CCCE
Confidence 1 112 235778999999999999998 9999999998887 7764
No 381
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=64.73 E-value=31 Score=33.69 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHH---HHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL---~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
-||.+.|+.|++.||.-|=+.-=.--|.|...++ +++.++ +++||=-===|=+.-++.....+|++-|.+=...+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~-~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~ 109 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA-TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK 109 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh-CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceec
Confidence 4899999999999999998876556676766554 455554 678876666677888899999999999988555554
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeC-----------------CHHHH-HHHhccCCCeEEEeeCCCCC--ccccChhhHHhh
Q 018446 274 DLDIRYMTKICKLLGLTALVEVH-----------------DEREM-DRVLGIEGIELIGINNRNLE--TFEVDNSNTKKL 333 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLVEVH-----------------~~eEL-erAl~l~ga~iIGINNRdL~--TfevDl~~t~~L 333 (355)
+.+.+.+.|+.+|=...|-+. +..|+ ++-.+. |+.-|-+.+=+-+ ---+|.+-+.+|
T Consensus 110 --~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~-g~~~ii~TdI~~DGtl~G~n~~l~~~l 186 (241)
T COG0106 110 --NPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEV-GLAHILYTDISRDGTLSGPNVDLVKEL 186 (241)
T ss_pred --CHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhc-CCCeEEEEecccccccCCCCHHHHHHH
Confidence 334566788888833333221 22333 333332 5544444433222 223566667777
Q ss_pred hcccccc
Q 018446 334 LEGERGE 340 (355)
Q Consensus 334 ~~~~~~~ 340 (355)
.+....+
T Consensus 187 ~~~~~ip 193 (241)
T COG0106 187 AEAVDIP 193 (241)
T ss_pred HHHhCcC
Confidence 6654333
No 382
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=64.45 E-value=51 Score=32.65 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~ 278 (355)
..++++...+.|+..+.|. +++.+..+|+++.+.|+|-=-- +.+-++..+..++ ++..+=+.++++
T Consensus 42 ~~~i~~~l~~~G~~~~~va--------s~~Ea~~lr~~G~~~~ilvl~~-~~~~~~~~~~~~~-----l~~~v~s~~~l~ 107 (367)
T TIGR00492 42 LIEVAKTLLQAGADYFGVA--------NLEEAITLRKAGITAPILLLGG-FFAEDLKILAAWD-----LTTTVHSVEQLQ 107 (367)
T ss_pred HHHHHHHHHHCCCCEEEEC--------cHHHHHHHHhcCCCCCEEEEeC-CCHHHHHHHHHcC-----CEEEECCHHHHH
Confidence 4679999889999887764 5677888888777777765432 2366676666554 255556677888
Q ss_pred HHHHHHHHcC--CcEEEEeCC--------HHHHHHH----hccCCCe-EEEee
Q 018446 279 YMTKICKLLG--LTALVEVHD--------EREMDRV----LGIEGIE-LIGIN 316 (355)
Q Consensus 279 ~L~~~A~~LG--LeaLVEVH~--------~eELerA----l~l~ga~-iIGIN 316 (355)
.|.++|.+.| ..++++|.+ .+|+..+ ...++.+ +.||-
T Consensus 108 ~l~~~a~~~~~~~~V~l~VdtGm~R~Gi~~~e~~~~~~~i~~~~~l~~l~Gi~ 160 (367)
T TIGR00492 108 ALEEALLKEPKRLKVHLKIDTGMNRLGVKPDEAALFVQKLRQLKKFLELEGIF 160 (367)
T ss_pred HHHHHHHHcCCceEEEEEeeCCCCCCCCChHHHHHHHHHHHhCCCCCCceEEE
Confidence 8989998888 678888763 2333333 3334677 88983
No 383
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=64.25 E-value=21 Score=34.47 Aligned_cols=80 Identities=14% Similarity=0.023 Sum_probs=57.5
Q ss_pred HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc--CCC-CCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH
Q 018446 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a--~v~-lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L 277 (355)
.+++.+...|.+. |.-|-+|-..+++.+....++ ... .|++|= ---|+..|-.+..+||++| ++.-+=+.++.
T Consensus 31 ~~~e~~a~~G~D~--v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRv-p~~~~~~i~r~LD~Ga~gi-ivP~v~tae~a 106 (256)
T PRK10558 31 ITTEVLGLAGFDW--LVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEPVIIKRLLDIGFYNF-LIPFVETAEEA 106 (256)
T ss_pred HHHHHHHhcCCCE--EEEccccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHHhCCCCCee-eecCcCCHHHH
Confidence 4888888999998 556667888899888765432 123 355555 3448999999999999998 45556667777
Q ss_pred HHHHHHH
Q 018446 278 RYMTKIC 284 (355)
Q Consensus 278 ~~L~~~A 284 (355)
+.+++.|
T Consensus 107 ~~~v~a~ 113 (256)
T PRK10558 107 RRAVAST 113 (256)
T ss_pred HHHHHHc
Confidence 7765543
No 384
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=64.11 E-value=20 Score=34.30 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHcCCcchHHHH--hcCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhccCCCeEEEeeC
Q 018446 247 FIVDAWQIYYARTKGADAVLLIA--AVLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIa--aiL~~~~L~~L~~~A~~LGLeaLVEV--H~~eELerAl~l~ga~iIGINN 317 (355)
.+-+|.-+..+...|+|.|.+=. +.++..++..++..++..|++++|=| ++...+.++|+. |++-|-|-.
T Consensus 19 ~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~-Ga~gIivP~ 92 (249)
T TIGR02311 19 GLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDI-GAQTLLVPM 92 (249)
T ss_pred eCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCC-CCCEEEecC
Confidence 45677777778889999987732 33677888889988888999999998 677889999997 887666543
No 385
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=64.10 E-value=85 Score=31.34 Aligned_cols=82 Identities=12% Similarity=-0.028 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHh
Q 018446 227 FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVL 305 (355)
Q Consensus 227 ~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl 305 (355)
.+.|..+|+...+++.. -.+. ++.+. ....|++++-+-...+++ ++++.|+..|+...|= |.+.+++++.+
T Consensus 192 ~~~l~~~~~~~P~~~~~-l~~~-~~~~~--l~~~~~~~l~~~~~~l~~----~~v~~a~~~Gl~V~vWTVNd~~~~~~l~ 263 (316)
T cd08610 192 AHDRQYVQSVAPGFKQH-VGRK-VPIET--LLKNNISILNLAYKKLFS----NDIRDYKAANIHTNVYVINEPWLFSLAW 263 (316)
T ss_pred HHHHHHHHHHCcchhhh-hccc-ccHHH--HHHcCCeEEccchhhCCH----HHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 56677777643444411 1222 23332 345799987776666764 6789999999999885 78899999999
Q ss_pred ccCCCeEEEeeC
Q 018446 306 GIEGIELIGINN 317 (355)
Q Consensus 306 ~l~ga~iIGINN 317 (355)
++ |++-|--|.
T Consensus 264 ~~-GVDgIiTD~ 274 (316)
T cd08610 264 CS-GIHSVTTNN 274 (316)
T ss_pred hC-CcCEEEeCC
Confidence 87 887765554
No 386
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=63.91 E-value=21 Score=37.25 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-----CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-----~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
+..+..+...++|+.+|-+- ++.. . .-+.+..+++. ...++++-.|+ ++ .|...|||+|=|=-.-|
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR-~k~~-~-~~~~~~~a~~l~~~~~~~~~~liind~----~~--lA~~~~adGvHl~~~d~ 378 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLR-EKEA-E-TREFIEEAKACLAICRSYGVPLLINDR----VD--VALACDADGVHLGQSDM 378 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEc-cCCC-C-HHHHHHHHHHHHHHHHHhCCEEEEcCh----HH--HHHhcCCCEEEeChHhc
Confidence 34566667778898887654 4432 1 11223333321 12455544443 44 47789999985543333
Q ss_pred CHHHHHHHHHHHHHcCCcEE--EEeCCHHHHHHHhccCCCeEEEe
Q 018446 273 PDLDIRYMTKICKLLGLTAL--VEVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaL--VEVH~~eELerAl~l~ga~iIGI 315 (355)
+..+.+ ..+|-+.+ +-+||.+|+.+|.+. |++.|++
T Consensus 379 ~~~~~r------~~~~~~~~iG~S~h~~~e~~~a~~~-gadyi~~ 416 (502)
T PLN02898 379 PVRLAR------SLLGPGKIIGVSCKTPEQAEQAWKD-GADYIGC 416 (502)
T ss_pred CHHHHH------HhcCCCCEEEEeCCCHHHHHHHhhc-CCCEEEE
Confidence 332222 22455555 678999999999986 9999994
No 387
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.88 E-value=73 Score=31.14 Aligned_cols=100 Identities=17% Similarity=0.106 Sum_probs=70.2
Q ss_pred ccCCCCCCC----HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE
Q 018446 218 TDEKYFKGS----FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV 293 (355)
Q Consensus 218 TD~~fF~GS----~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV 293 (355)
|-+..|+|- +..|.++++. ..+|++. =+.|+.|+..+.. .+|.+-+=+.-+.. ..|++.+.+.|.-+++
T Consensus 55 ts~~sf~G~G~~gl~~L~~~~~~-~Gl~~~T--ev~d~~~v~~~~e-~vdilqIgs~~~~n---~~LL~~va~tgkPVil 127 (250)
T PRK13397 55 TSAASFQGLGLQGIRYLHEVCQE-FGLLSVS--EIMSERQLEEAYD-YLDVIQVGARNMQN---FEFLKTLSHIDKPILF 127 (250)
T ss_pred CCCcccCCCCHHHHHHHHHHHHH-cCCCEEE--eeCCHHHHHHHHh-cCCEEEECcccccC---HHHHHHHHccCCeEEE
Confidence 455567762 5667777764 7899998 4779999999988 59976666666655 4678888889999999
Q ss_pred EeC---CHHHHHHHhcc---CCCeEEEeeCCCCCccc
Q 018446 294 EVH---DEREMDRVLGI---EGIELIGINNRNLETFE 324 (355)
Q Consensus 294 EVH---~~eELerAl~l---~ga~iIGINNRdL~Tfe 324 (355)
.-. +.+|+..|++. .|.+=|.+-.|-..||.
T Consensus 128 k~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~ 164 (250)
T PRK13397 128 KRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYD 164 (250)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCC
Confidence 976 88888887643 24443444444434443
No 388
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=63.53 E-value=14 Score=33.45 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCceEEEEec-cCCCCC-----CCHHHHHHHHhcCCC---C-CeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 199 PVEIARSYEKGGAACLSILT-DEKYFK-----GSFENLEAVRSAGVK---C-PLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLT-D~~fF~-----GS~edL~~VR~a~v~---l-PVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
+.+.++.|.. +++-+-+.+ ++..-+ -.++.+..+++. .+ + |.++=|++|++-.+.+...+|||.|.+.
T Consensus 121 ~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~-~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 121 PLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKL-IDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 3566777754 356555544 121111 124566666543 22 3 6778899999999999999999999999
Q ss_pred HhcCCHHHHHHHHH
Q 018446 269 AAVLPDLDIRYMTK 282 (355)
Q Consensus 269 aaiL~~~~L~~L~~ 282 (355)
-++...++....++
T Consensus 199 Sai~~~~d~~~~~~ 212 (220)
T PRK05581 199 SAVFGAPDYKEAID 212 (220)
T ss_pred hhhhCCCCHHHHHH
Confidence 99997666554443
No 389
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=63.39 E-value=87 Score=30.94 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~ 279 (355)
.++++...+.|+.++.|- +.+.+..+++++++-+++..- +.+-.+.++..+-...+-++..+=+.++|+.
T Consensus 44 ~~i~~~~~~~G~~~~~va--------s~~Ea~~~~~aG~~~il~~~~--~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~ 113 (374)
T cd06812 44 LEVARRLLAAGASPATVS--------TLKEAEAFAEAGYRDILYAVG--IAPAKLPRVLALRRQGVNLTILLDSVEQAQA 113 (374)
T ss_pred HHHHHHHHhCCCCcEEEc--------cHHHHHHHHHcCCCeeEEeCC--CCHHHHHHHHHHHhcCCceEEEECCHHHHHH
Confidence 368888888898777665 677888888877665555544 2555554444432222223445557788888
Q ss_pred HHHHHHHcC--CcEEEEeCC---------H-H---HHHHHhccCCCeEEEee
Q 018446 280 MTKICKLLG--LTALVEVHD---------E-R---EMDRVLGIEGIELIGIN 316 (355)
Q Consensus 280 L~~~A~~LG--LeaLVEVH~---------~-e---ELerAl~l~ga~iIGIN 316 (355)
|.++|...| +.++++|.+ . + ++.+.+...+.++.||-
T Consensus 114 l~~~a~~~~~~~~V~l~vd~G~~R~Gv~~~~~~~~~l~~~i~~~~l~l~Gi~ 165 (374)
T cd06812 114 VAAFSRQHGVRFPVLIEIDCDGHRGGIAPDSDALLEIARILHDGGAELRGVL 165 (374)
T ss_pred HHHHHHHcCCceEEEEEeCCCCCcCCCCCCcHHHHHHHHHHhcCCceEEEEE
Confidence 888888766 356666543 1 2 22233332467899986
No 390
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=63.22 E-value=7.1 Score=33.74 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=30.8
Q ss_pred cCHHHHHHHHHcCCcchHHHHhcCCH-----------HHHHHHHHHHHHcCCc
Q 018446 249 VDAWQIYYARTKGADAVLLIAAVLPD-----------LDIRYMTKICKLLGLT 290 (355)
Q Consensus 249 IdpyQI~eAr~~GADAVLLIaaiL~~-----------~~L~~L~~~A~~LGLe 290 (355)
|||..|.+|...|||+|++...-.++ ...+.+-++-..+|++
T Consensus 40 v~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~ 92 (124)
T PF02662_consen 40 VDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIE 92 (124)
T ss_pred cCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999998776544 2344444455556665
No 391
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=63.18 E-value=19 Score=33.01 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCcchHHHHhc---CC---H---HHHHHHHHHHHHcCCcEEEEeC--CHHHHHHH----hccCCCeEEEee
Q 018446 252 WQIYYARTKGADAVLLIAAV---LP---D---LDIRYMTKICKLLGLTALVEVH--DEREMDRV----LGIEGIELIGIN 316 (355)
Q Consensus 252 yQI~eAr~~GADAVLLIaai---L~---~---~~L~~L~~~A~~LGLeaLVEVH--~~eELerA----l~l~ga~iIGIN 316 (355)
.++.+|..+|||+|=..+.+ ++ + +++..+.+.|+.+.+-+++|.. +.+++.++ .++ ||++|=..
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~-GaD~IKTs 151 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA-GADFIKTS 151 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh-CCCEEEcC
Confidence 45889999999998664443 23 2 2344445555423344567775 34566554 344 89988775
No 392
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=63.02 E-value=72 Score=31.43 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=78.3
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcC-ceEEEEeccCC------CCCCCHHH----HHHHHhcCCCCCeecc-
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGG-AACLSILTDEK------YFKGSFEN----LEAVRSAGVKCPLLCK- 245 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~G-AaaISVLTD~~------fF~GS~ed----L~~VR~a~v~lPVLrK- 245 (355)
.||+-+--.|+. +-.++|+..+.+| |++|=++.--. -|+-+.+. ++.||++ +++||+.|
T Consensus 94 pvI~Si~G~~~~--------~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~-~~~Pv~vKl 164 (310)
T PRK02506 94 PHFLSVVGLSPE--------ETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTY-FTKPLGVKL 164 (310)
T ss_pred CEEEEEEeCcHH--------HHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHh-cCCccEEec
Confidence 477776444442 3457788888887 99988855311 13334444 4566765 78999876
Q ss_pred --ccccCHHHHHHHH----HcCCcchHHHHh----------------------------cCCHHHHHHHHHHHHHcCC-c
Q 018446 246 --EFIVDAWQIYYAR----TKGADAVLLIAA----------------------------VLPDLDIRYMTKICKLLGL-T 290 (355)
Q Consensus 246 --DFIIdpyQI~eAr----~~GADAVLLIaa----------------------------iL~~~~L~~L~~~A~~LGL-e 290 (355)
|+ +.-.+.++. ..|+|+|..+-. .+.+-.|+...+.++.++. -
T Consensus 165 sp~~--~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 242 (310)
T PRK02506 165 PPYF--DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSI 242 (310)
T ss_pred CCCC--CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCC
Confidence 43 555555443 445565544431 0122234455555566642 1
Q ss_pred EEE---EeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 291 ALV---EVHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 291 aLV---EVH~~eELerAl~l~ga~iIGINNRdL 320 (355)
+|+ -|+|.+|+-+.+.+ ||++|+|-.=.+
T Consensus 243 pIig~GGI~s~~da~e~i~a-GA~~Vqv~ta~~ 274 (310)
T PRK02506 243 QIIGTGGVKTGRDAFEHILC-GASMVQVGTALH 274 (310)
T ss_pred CEEEECCCCCHHHHHHHHHc-CCCHHhhhHHHH
Confidence 333 57999999999986 999988765433
No 393
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=62.75 E-value=47 Score=27.99 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=58.6
Q ss_pred ccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 248 IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 248 IIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL 320 (355)
+.-..|+.++...|.-.+++++.=.+++.-+.+.+.|...+... ++.-|.+||..|+.-+...++||.+..+
T Consensus 19 v~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~-~~~~t~~eLg~a~Gk~~~~~iai~d~g~ 90 (104)
T PRK05583 19 LEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPY-IEGYSKEELGNAIGRDEIKILGVKDKNM 90 (104)
T ss_pred eecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCE-EEecCHHHHHHHhCCCCeEEEEEeChHH
Confidence 33444788998889878888888889988899999999998875 5668999999999754578999987654
No 394
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=62.69 E-value=28 Score=32.48 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=58.9
Q ss_pred HHHHHHHcCceEEEEeccCCCCCCCHHHHH-------HHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH
Q 018446 202 IARSYEKGGAACLSILTDEKYFKGSFENLE-------AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~-------~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~ 274 (355)
..+...++|+++|=.- ++.. +.+++. .+.+. ...|++-.|. +++ |...|||+|=|=..-++.
T Consensus 24 ~l~~~l~~G~~~vqLR-~k~~---~~~~~~~la~~l~~~~~~-~~~~liInd~----~~l--A~~~~adGVHlg~~d~~~ 92 (211)
T PRK03512 24 WIERLLDAGVRTLQLR-IKDR---RDEEVEADVVAAIALGRR-YQARLFINDY----WRL--AIKHQAYGVHLGQEDLET 92 (211)
T ss_pred HHHHHHhCCCCEEEEc-CCCC---CHHHHHHHHHHHHHHHHH-hCCeEEEeCH----HHH--HHHcCCCEEEcChHhCCH
Confidence 4555566787766543 4432 322222 22222 3578776664 555 777999998553333332
Q ss_pred HHHHHHHHHHHHcCCcEE--EEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 275 LDIRYMTKICKLLGLTAL--VEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaL--VEVH~~eELerAl~l~ga~iIGINNR 318 (355)
.+.. ..+|-..+ +-+||.+|+.+|... |++.||+---
T Consensus 93 ~~~r------~~~~~~~~iG~S~H~~~e~~~A~~~-gaDYi~lgpv 131 (211)
T PRK03512 93 ADLN------AIRAAGLRLGVSTHDDMEIDVALAA-RPSYIALGHV 131 (211)
T ss_pred HHHH------HhcCCCCEEEEeCCCHHHHHHHhhc-CCCEEEECCc
Confidence 2222 22454444 488999999999886 9999998753
No 395
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=62.60 E-value=33 Score=32.63 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=22.4
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEE
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI 216 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISV 216 (355)
.||+++ |+ |.= ...+....++.|.++||++|-+
T Consensus 71 Pv~~D~----~~-G~g-~~~~~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 71 PVIADA----DT-GYG-NALNVARTVRELEEAGAAGIHI 103 (243)
T ss_pred CEEEEc----CC-CCC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 489988 44 321 1124556688899999999877
No 396
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.54 E-value=10 Score=37.65 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCcc
Q 018446 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 288 GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tf 323 (355)
....-|||.|.+|++.|+++ |+++|...|-+.++.
T Consensus 197 ~~kIeVEv~tleea~~a~~a-gaDiImLDnmspe~l 231 (290)
T PRK06559 197 VKMVEVEVESLAAAEEAAAA-GADIIMLDNMSLEQI 231 (290)
T ss_pred CCeEEEECCCHHHHHHHHHc-CCCEEEECCCCHHHH
Confidence 36789999999999999997 999999998766543
No 397
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=62.43 E-value=67 Score=33.71 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCC--------CCHHHHHHHHhcCCCCCee--cc---cccc-------CHHHHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFK--------GSFENLEAVRSAGVKCPLL--CK---EFIV-------DAWQIYYA 257 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~--------GS~edL~~VR~a~v~lPVL--rK---DFII-------dpyQI~eA 257 (355)
|-..+|..+.+.|...|=|- -..-|. ..++.|+.+|+...+.++- .. =... -.--|..|
T Consensus 27 dkl~ia~~Ld~~Gv~~IE~~-ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A 105 (448)
T PRK12331 27 EMLPILEKLDNAGYHSLEMW-GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKS 105 (448)
T ss_pred HHHHHHHHHHHcCCCEEEec-CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHH
Confidence 56789999999999998772 111122 1467888888753345542 11 1111 12356789
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-------eCCHHH----HHHHhccCCCeEEEeeCCCCCccc-c
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-------VHDERE----MDRVLGIEGIELIGINNRNLETFE-V 325 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-------VH~~eE----LerAl~l~ga~iIGINNRdL~Tfe-v 325 (355)
..+|.|.|-+-.++=+-..+...+++|++.|+.+-+- .|+.+- ++++.++ |++.|.|-. |.- .
T Consensus 106 ~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~-Gad~I~i~D----t~G~l 180 (448)
T PRK12331 106 VENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEM-GADSICIKD----MAGIL 180 (448)
T ss_pred HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc-CCCEEEEcC----CCCCC
Confidence 9999997665555544457888999999999875421 344333 3345554 888888752 222 3
Q ss_pred ChhhHHhhhcccc
Q 018446 326 DNSNTKKLLEGER 338 (355)
Q Consensus 326 Dl~~t~~L~~~~~ 338 (355)
.+..+.+|...++
T Consensus 181 ~P~~v~~lv~alk 193 (448)
T PRK12331 181 TPYVAYELVKRIK 193 (448)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666665543
No 398
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=62.07 E-value=11 Score=35.66 Aligned_cols=60 Identities=30% Similarity=0.386 Sum_probs=42.9
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeec
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLC 244 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLr 244 (355)
++..||+=+-.. | ..+..++|+.+++.||+++.|+. |.||..+. +++.+|.++ +++||+-
T Consensus 65 ~~~~vi~gv~~~--~------~~~~i~~a~~a~~~Gad~v~v~p-P~y~~~~~~~~~~~~~~ia~~-~~~pi~i 128 (281)
T cd00408 65 GRVPVIAGVGAN--S------TREAIELARHAEEAGADGVLVVP-PYYNKPSQEGIVAHFKAVADA-SDLPVIL 128 (281)
T ss_pred CCCeEEEecCCc--c------HHHHHHHHHHHHHcCCCEEEECC-CcCCCCCHHHHHHHHHHHHhc-CCCCEEE
Confidence 456688777221 1 23678999999999999999977 66777554 456667765 7888863
No 399
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=61.90 E-value=41 Score=33.46 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=71.7
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEecc-------CCCCCCCH--------HHHHHHHhcCCCCCe
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD-------EKYFKGSF--------ENLEAVRSAGVKCPL 242 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD-------~~fF~GS~--------edL~~VR~a~v~lPV 242 (355)
.+|+-+--.+|. +..+.|+...+.|+++|=+... ..-+||++ +-+..+|++ +++||
T Consensus 66 p~~vQl~g~~p~--------~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-v~~pV 136 (333)
T PRK11815 66 PVALQLGGSDPA--------DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-VSIPV 136 (333)
T ss_pred cEEEEEeCCCHH--------HHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-cCCce
Confidence 366666444442 2334555566778888865511 12355553 456777875 78999
Q ss_pred ecccc-ccCH-------HHHHH-HHHcCCcchHHHHhc-----CC--------HHHHHHHHHHHHHc-CCcEEE--EeCC
Q 018446 243 LCKEF-IVDA-------WQIYY-ARTKGADAVLLIAAV-----LP--------DLDIRYMTKICKLL-GLTALV--EVHD 297 (355)
Q Consensus 243 LrKDF-IIdp-------yQI~e-Ar~~GADAVLLIaai-----L~--------~~~L~~L~~~A~~L-GLeaLV--EVH~ 297 (355)
-.|.= .++. .++.. ...+|+|+|.+-.+. ++ +-++..+.++++.. .+-.+. -|+|
T Consensus 137 svKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s 216 (333)
T PRK11815 137 TVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKT 216 (333)
T ss_pred EEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCC
Confidence 98852 2222 23322 345799998765332 11 12344444555544 444443 5788
Q ss_pred HHHHHHHhccCCCeEEEe
Q 018446 298 EREMDRVLGIEGIELIGI 315 (355)
Q Consensus 298 ~eELerAl~l~ga~iIGI 315 (355)
.+++++++. +++.|.|
T Consensus 217 ~eda~~~l~--~aDgVmI 232 (333)
T PRK11815 217 LEEAKEHLQ--HVDGVMI 232 (333)
T ss_pred HHHHHHHHh--cCCEEEE
Confidence 888888875 4676665
No 400
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.70 E-value=51 Score=33.85 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=81.6
Q ss_pred CHHHHHHHHHH-cCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchH--------HH
Q 018446 198 DPVEIARSYEK-GGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LI 268 (355)
Q Consensus 198 Dp~~iA~~Ye~-~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVL--------LI 268 (355)
|...+.+..+. .|++.|-|-+--.|-.+-.+.++.+|+...+++|+.=. +.++-+..+-..+|||+|- -+
T Consensus 109 d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGN-V~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 109 DFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGN-VVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEec-ccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 34444444432 69999999888777777778888888764567766655 4567799999999999984 33
Q ss_pred HhcC---CHHHHHH---HHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEee
Q 018446 269 AAVL---PDLDIRY---MTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 269 aaiL---~~~~L~~---L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGIN 316 (355)
.++. +-.+|.. ..+.|+.+|...+- -+++.-++-+|+.+ ||+.+.+-
T Consensus 188 Tr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaa-GAd~VMlG 242 (346)
T PRK05096 188 TRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGG-GADFVMLG 242 (346)
T ss_pred CccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHc-CCCEEEeC
Confidence 3322 2224444 45677888886554 48899999999997 88877653
No 401
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=61.67 E-value=35 Score=34.30 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcC-ceEEEEeccCCCCCCCHHHHH-----------HHHhcCCCCCeecc---ccccCHHHHHHHHHcCC
Q 018446 198 DPVEIARSYEKGG-AACLSILTDEKYFKGSFENLE-----------AVRSAGVKCPLLCK---EFIVDAWQIYYARTKGA 262 (355)
Q Consensus 198 Dp~~iA~~Ye~~G-AaaISVLTD~~fF~GS~edL~-----------~VR~a~v~lPVLrK---DFIIdpyQI~eAr~~GA 262 (355)
+..+++...++.| |++|=++.--..=.| ..+|. .|++. +++||+-| ++-==..-...+..+||
T Consensus 110 ~~~d~~~~~~~~~~ad~ielNiScPnt~g-~~~l~~~~e~l~~l~~~vk~~-~~~Pv~vKl~P~~~di~~iA~~~~~~g~ 187 (310)
T COG0167 110 AWADYARLLEEAGDADAIELNISCPNTPG-GRALGQDPELLEKLLEAVKAA-TKVPVFVKLAPNITDIDEIAKAAEEAGA 187 (310)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCCCCC-hhhhccCHHHHHHHHHHHHhc-ccCceEEEeCCCHHHHHHHHHHHHHcCC
Q ss_pred cchHHHHhc--------------------------CCHHHHHHHHHHHHHcC----CcEEEEeCCHHHHHHHhccCCCeE
Q 018446 263 DAVLLIAAV--------------------------LPDLDIRYMTKICKLLG----LTALVEVHDEREMDRVLGIEGIEL 312 (355)
Q Consensus 263 DAVLLIaai--------------------------L~~~~L~~L~~~A~~LG----LeaLVEVH~~eELerAl~l~ga~i 312 (355)
|+|.+|=.+ +.+--++-+.++++.+| +-..==|+|.+|+-.-+.+ ||++
T Consensus 188 Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~a-GA~~ 266 (310)
T COG0167 188 DGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILA-GASA 266 (310)
T ss_pred cEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHc-CCch
Q ss_pred EEe
Q 018446 313 IGI 315 (355)
Q Consensus 313 IGI 315 (355)
+.|
T Consensus 267 vQv 269 (310)
T COG0167 267 VQV 269 (310)
T ss_pred hee
No 402
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=61.39 E-value=75 Score=31.31 Aligned_cols=69 Identities=16% Similarity=0.000 Sum_probs=51.1
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhc---------------CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCe
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAV---------------LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIE 311 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaai---------------L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~ 311 (355)
|...+--+.+-+.+|-.+|.=.-.+ ++-..=-+|+..|+.++|-.+-=|.|.+|...+.++ |++
T Consensus 100 f~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eAqa~~~a-Gad 178 (276)
T COG5564 100 FCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEAQAMTKA-GAD 178 (276)
T ss_pred chhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHHHHHHHc-Ccc
Confidence 4455555667778888887643222 222233478999999999999999999999999997 999
Q ss_pred EEEee
Q 018446 312 LIGIN 316 (355)
Q Consensus 312 iIGIN 316 (355)
||-.|
T Consensus 179 iiv~h 183 (276)
T COG5564 179 IIVAH 183 (276)
T ss_pred eeeec
Confidence 88543
No 403
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=61.34 E-value=34 Score=29.17 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=60.4
Q ss_pred cccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccC-CCeEEEeeCCCCCc
Q 018446 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIE-GIELIGINNRNLET 322 (355)
Q Consensus 247 FIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~-ga~iIGINNRdL~T 322 (355)
.++-..|+..|...|---.++|+.=.++...+.+.++|+..|...++-+.|.+||-+|+..+ .+.++||...+...
T Consensus 26 lv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~r~svvaI~D~G~a~ 102 (108)
T PTZ00106 26 YTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHFRVSVMSITDAGDSD 102 (108)
T ss_pred eeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCccCeEEEEEeCcchHH
Confidence 45666788888777766666777778888888999999999988776689999999998753 35589998877543
No 404
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=61.29 E-value=19 Score=36.30 Aligned_cols=76 Identities=21% Similarity=0.163 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcCCH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPD 274 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL~~ 274 (355)
..++++.+++.|.+.|+|-. +.+..+ ....-..+|++ +++||++---+ ++-+..++...| ||.|-+==++|.+
T Consensus 251 ~~~~~~~L~~~giD~i~vs~-~~~~~~~~~~~~~~~~ik~~-~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 251 ALYLIEQLGKRGIAYLHMSE-PDWAGGEPYSDAFREKVRAR-FHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHHHHHHHHcCCCEEEecc-ccccCCccccHHHHHHHHHH-CCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 46788999999999999864 222211 23344778886 89999987664 999999999988 9999887777766
Q ss_pred HHH
Q 018446 275 LDI 277 (355)
Q Consensus 275 ~~L 277 (355)
-++
T Consensus 328 Pd~ 330 (362)
T PRK10605 328 PDL 330 (362)
T ss_pred ccH
Confidence 444
No 405
>PRK09989 hypothetical protein; Provisional
Probab=61.28 E-value=1.1e+02 Score=28.54 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCCC-CCH------HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYFK-GSF------ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~-GS~------edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
++++.++.+..++.|-.+.++.+....+. |+. ......++ + + .--|..|+.+||+.|...
T Consensus 39 ~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-l--~~~i~~A~~lg~~~v~v~ 105 (258)
T PRK09989 39 DYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARA----------D-I--DLALEYALALNCEQVHVM 105 (258)
T ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHH----------H-H--HHHHHHHHHhCcCEEEEC
Confidence 36788888899999988777665433222 221 00001111 1 1 335666788888877554
Q ss_pred HhcC----C--------HHHHHHHHHHHHHcCCcEEEEe-----------CCHHHHHHHhccCCCeEEEe
Q 018446 269 AAVL----P--------DLDIRYMTKICKLLGLTALVEV-----------HDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 269 aaiL----~--------~~~L~~L~~~A~~LGLeaLVEV-----------H~~eELerAl~l~ga~iIGI 315 (355)
...+ + -+.|+++.++|...|+...+|- .+.+++...++.-+.+-+|+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~ll~~v~~~~v~l 175 (258)
T PRK09989 106 AGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFI 175 (258)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHHHHHHHHcCCCCeEE
Confidence 4332 1 1467888999999999999986 35566666555323333444
No 406
>PLN02334 ribulose-phosphate 3-epimerase
Probab=60.86 E-value=21 Score=33.28 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcC-ceEEEEeccC------CCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGG-AACLSILTDE------KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~G-AaaISVLTD~------~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
++.+.++.|...| ++-|.+.+=. .|-...++.+..+|+...++| +.=|=.|.+-.+.+...+|||.|...-+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~-I~a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELD-IEVDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCc-EEEeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 4567788887664 8888443321 222344567777776433456 4445578999999999999999999999
Q ss_pred cCCHHHHHH
Q 018446 271 VLPDLDIRY 279 (355)
Q Consensus 271 iL~~~~L~~ 279 (355)
+...++.+.
T Consensus 205 i~~~~d~~~ 213 (229)
T PLN02334 205 VFGAPDYAE 213 (229)
T ss_pred HhCCCCHHH
Confidence 886555443
No 407
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=60.80 E-value=90 Score=31.11 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=74.0
Q ss_pred CceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHH
Q 018446 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIY 255 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~ 255 (355)
+..+..|+|..... ...-..|. .++.+.+.+.|...-.|. +| +.+.|..+++...+++.... +. .
T Consensus 152 ~~~l~IEIK~~~~~-~~~~~~f~-~~vl~~i~~~~~~~~~v~----~~--~~~~l~~~~~~~P~~~~~~~------~~-~ 216 (315)
T cd08609 152 NVSIMFDLRNENNS-HVFYSSFV-FYTLETILKLGIPPDKVW----WL--PDEYRHDVMKMEPGFKQVYG------RQ-K 216 (315)
T ss_pred CCEEEEEeCCCCCC-CccHHHHH-HHHHHHHHHcCCCcceEE----Ee--CHHHHHHHHHhCcCceeecc------cc-h
Confidence 34699999964221 11111222 245566666674321221 22 56788888875445555321 11 1
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEeeC
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGINN 317 (355)
.....|++.+-+-...+++ .+++.+++.|+...+ -|++.+++++.++. |++-|--|+
T Consensus 217 ~~~~~~~~~i~~~~~~l~~----~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~-GVDgIiTD~ 274 (315)
T cd08609 217 EMLMDGGNFMNLPYQDLSA----LEIKELRKDNVSVNLWVVNEPWLFSLLWCS-GVSSVTTNA 274 (315)
T ss_pred hhHhcCCeEEecccccCCH----HHHHHHHHCCCEEEEECCCCHHHHHHHHhc-CCCEEEcCC
Confidence 1123588876555566654 578999999999887 56889999999997 887765554
No 408
>PRK06348 aspartate aminotransferase; Provisional
Probab=60.65 E-value=15 Score=36.18 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=57.5
Q ss_pred HHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCee-ccccccCHHHHHHHHHcCCcchHHH------HhcCCH
Q 018446 202 IARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL-CKEFIVDAWQIYYARTKGADAVLLI------AAVLPD 274 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVL-rKDFIIdpyQI~eAr~~GADAVLLI------aaiL~~ 274 (355)
++..+.+.|- .|+++...|.+-...+.......+.+|+. ..+|.+|.-.+.++.....++|++. -.+++.
T Consensus 105 ~~~~~~~~gd---~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~ 181 (384)
T PRK06348 105 ALQSILDPGD---EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSK 181 (384)
T ss_pred HHHHhcCCCC---EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCH
Confidence 3455555453 46666677766555554432111344543 3568899888877665567777653 566889
Q ss_pred HHHHHHHHHHHHcCCcEE
Q 018446 275 LDIRYMTKICKLLGLTAL 292 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaL 292 (355)
+++++|++.|++.|+-.+
T Consensus 182 ~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 182 ETLEEIAKIAIEYDLFII 199 (384)
T ss_pred HHHHHHHHHHHHCCeEEE
Confidence 999999999999997544
No 409
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.63 E-value=44 Score=33.15 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=86.5
Q ss_pred cHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCC
Q 018446 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (355)
Q Consensus 162 dF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lP 241 (355)
....++++... ....+..+.- +-+.. .+...+++.+++.|... -|+.+..++++.++.+|+. +++|
T Consensus 174 ~~v~air~~~g--~~~~l~vDaN------~~~~~-~~A~~~~~~l~~~~i~~----iEeP~~~~d~~~~~~l~~~-~~ip 239 (355)
T cd03321 174 AVVRSIRQAVG--DGVGLMVDYN------QSLTV-PEAIERGQALDQEGLTW----IEEPTLQHDYEGHARIASA-LRTP 239 (355)
T ss_pred HHHHHHHHhhC--CCCEEEEeCC------CCcCH-HHHHHHHHHHHcCCCCE----EECCCCCcCHHHHHHHHHh-cCCC
Confidence 45667766431 2346777652 11221 13446667777666332 3556778999999999986 8999
Q ss_pred eeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh
Q 018446 242 LLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (355)
Q Consensus 242 VLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl 305 (355)
|..-+-+-++++.......| +|.|.+=+.-. +-.....+.++|+..|+.. ..|...++...+
T Consensus 240 ia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~--~~h~~~~~~~h~ 303 (355)
T cd03321 240 VQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPM--SSHLFQEISAHL 303 (355)
T ss_pred EEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCee--cccchHHHHHHH
Confidence 99988888999988887765 66666533333 4557778999999999995 578877764433
No 410
>PRK08185 hypothetical protein; Provisional
Probab=60.61 E-value=1.1e+02 Score=30.41 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=72.9
Q ss_pred CCCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH----HHHHHHHHHcCCcEEE-----------------E-
Q 018446 238 VKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI----RYMTKICKLLGLTALV-----------------E- 294 (355)
Q Consensus 238 v~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L----~~L~~~A~~LGLeaLV-----------------E- 294 (355)
.++| .|.=|=.-|.-+|.+|...|.+.|.+=.+-|+.++- +++.++|+..|...=. +
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~ 146 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEI 146 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccc
Confidence 5778 588899999999999999999999999999998764 4456777875543211 1
Q ss_pred -eCCHHHHHHHhccCCCeEEEeeCCCCCcc-------ccChhhHHhhhcc
Q 018446 295 -VHDEREMDRVLGIEGIELIGINNRNLETF-------EVDNSNTKKLLEG 336 (355)
Q Consensus 295 -VH~~eELerAl~l~ga~iIGINNRdL~Tf-------evDl~~t~~L~~~ 336 (355)
.|+.+|.++.....|++.+.|..=|.+.. ++|++...++.+.
T Consensus 147 ~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~ 196 (283)
T PRK08185 147 IYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINER 196 (283)
T ss_pred cCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHh
Confidence 67999999988755899999954443332 3566666666543
No 411
>PRK04302 triosephosphate isomerase; Provisional
Probab=60.49 E-value=30 Score=32.09 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=50.3
Q ss_pred HHHHHHHcCceEEEEeccCCCCCC--------CHHHH----HHHHhcCCCCCeecccccc-CHHHHHHHHHcCCcchHHH
Q 018446 202 IARSYEKGGAACLSILTDEKYFKG--------SFENL----EAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~G--------S~edL----~~VR~a~v~lPVLrKDFII-dpyQI~eAr~~GADAVLLI 268 (355)
.++...+.|...|.+.- .|..| ..+.+ ..+|+...++||+. .|.| ++-++.++...|||+||.=
T Consensus 126 ~~~~~~~~~~~~I~~~p--~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~-GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 126 TSAAAAALGPDYVAVEP--PELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLC-GAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHhcCCCCEEEEeC--ccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEE-ECCCCCHHHHHHHHcCCCCEEEEe
Confidence 34455667777777643 22211 23333 44666424689998 5777 8888889989999999998
Q ss_pred HhcCCHHHHHHH
Q 018446 269 AAVLPDLDIRYM 280 (355)
Q Consensus 269 aaiL~~~~L~~L 280 (355)
-+++..++....
T Consensus 203 sa~l~~~~~~~~ 214 (223)
T PRK04302 203 SGVVKAKDPEAA 214 (223)
T ss_pred hHHhCCcCHHHH
Confidence 888876555443
No 412
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=60.45 E-value=12 Score=36.96 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=76.9
Q ss_pred HHHHHHHHcCceEEEEeccCCC-------------CCCCHHHHHHH-Hh---cCCCCCeeccccccCHH-----HHHHHH
Q 018446 201 EIARSYEKGGAACLSILTDEKY-------------FKGSFENLEAV-RS---AGVKCPLLCKEFIVDAW-----QIYYAR 258 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~f-------------F~GS~edL~~V-R~---a~v~lPVLrKDFIIdpy-----QI~eAr 258 (355)
-.|+.-+++||+-|-++--..| |+-+.+-.... ++ ...+.|||.==..-||| =+.+-+
T Consensus 26 lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk 105 (268)
T PF09370_consen 26 LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDELK 105 (268)
T ss_dssp HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHHH
T ss_pred hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHHH
Confidence 5677788888988887765443 21222222211 22 12357887654444443 456778
Q ss_pred HcCCcchHHHH--hc-------------CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeC------
Q 018446 259 TKGADAVLLIA--AV-------------LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN------ 317 (355)
Q Consensus 259 ~~GADAVLLIa--ai-------------L~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINN------ 317 (355)
..|-.+|.=.- .+ ++-+.=-+|++.|+++||-.+-=|.|++|.++..++ ||++|.++=
T Consensus 106 ~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~A-GaDiiv~H~GlT~gG 184 (268)
T PF09370_consen 106 ELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEA-GADIIVAHMGLTTGG 184 (268)
T ss_dssp HHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHH-T-SEEEEE-SS----
T ss_pred HhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHc-CCCEEEecCCccCCC
Confidence 88988875322 11 232333468999999999999999999999999997 999998763
Q ss_pred ----CCCCccccChhhHHhhhccccccccccCceE
Q 018446 318 ----RNLETFEVDNSNTKKLLEGERGEIIRQKNII 348 (355)
Q Consensus 318 ----RdL~TfevDl~~t~~L~~~~~~~~l~~~~i~ 348 (355)
.+-.|++--.+.+.++... ...++++.|+
T Consensus 185 ~~Ga~~~~sl~~a~~~~~~i~~a--a~~v~~dii~ 217 (268)
T PF09370_consen 185 SIGAKTALSLEEAAERIQEIFDA--ARAVNPDIIV 217 (268)
T ss_dssp ------S--HHHHHHHHHHHHHH--HHCC-TT-EE
T ss_pred CcCccccCCHHHHHHHHHHHHHH--HHHhCCCeEE
Confidence 2333444444455555543 3344554443
No 413
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=60.42 E-value=1.1e+02 Score=30.82 Aligned_cols=103 Identities=16% Similarity=0.274 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~ 276 (355)
.-..++|+...++||..+.| .+++.-..+|+++.+.|||.=-. ..+-++.++..++ ++..+-+.++
T Consensus 39 hG~~~va~~l~~~G~~~faV--------a~~~EA~~Lr~~Gi~~~Ilvl~~-~~~~~~~~~~~~~-----l~~~i~~~~~ 104 (368)
T cd06825 39 HGDVEVARVLEQIGIDFFAV--------ATIDEGIRLREAGIKGEILILGY-TPPVRAKELKKYS-----LTQTLISEAY 104 (368)
T ss_pred CCHHHHHHHHHHcCCCEEEE--------ccHHHHHHHHhcCCCCCEEEEcC-CCHHHHHHHHHcC-----CEEEECCHHH
Confidence 45678999999999999777 45788888998777888887322 2355666655443 3445556677
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-----------HHHHHHHhccCCCeEEEe
Q 018446 277 IRYMTKICKLLGLTALVEVHD-----------EREMDRVLGIEGIELIGI 315 (355)
Q Consensus 277 L~~L~~~A~~LGLeaLVEVH~-----------~eELerAl~l~ga~iIGI 315 (355)
++.|.+++ ..+.+.++|.+ .+.+.....+++.++.||
T Consensus 105 l~~l~~~~--~~~~vhlkvDtGm~R~G~~~~~~~~~~~~~~~~~l~~~Gi 152 (368)
T cd06825 105 AEELSKYA--VNIKVHLKVDTGMHRLGESPEDIDSILAIYRLKNLKVSGI 152 (368)
T ss_pred HHHHHhcC--CCceEEEEeeCCCCCCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 77777766 34556666652 223333334457889998
No 414
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=60.32 E-value=84 Score=30.03 Aligned_cols=87 Identities=21% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCC---HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS---~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~ 273 (355)
.||.+.|+.|.+.|+.-+=|---..-+ |. ++.++.+.+. +.+|+----=|=+.-|+.....+|||-|.+--..+.
T Consensus 31 ~~p~~~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~~-~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 31 GSLESAAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVKL-LVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred CCHHHHHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHHH-CCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 389999999999998654432222222 44 4556666664 677877666777889999999999999988666565
Q ss_pred H-HHHHHHHHHHHHcC
Q 018446 274 D-LDIRYMTKICKLLG 288 (355)
Q Consensus 274 ~-~~L~~L~~~A~~LG 288 (355)
+ +-++ +.++..|
T Consensus 109 ~p~~~~---~~~~~~g 121 (243)
T TIGR01919 109 NPWWAA---AVIRYGG 121 (243)
T ss_pred CHHHHH---HHHHHcc
Confidence 3 3333 4444444
No 415
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=60.32 E-value=1e+02 Score=30.58 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=71.4
Q ss_pred CHHHH---HHHHHHcCceEEEEecc-C-----CCCCCC-----H----HHHHHHHhcCCCCCeeccc------cccCHHH
Q 018446 198 DPVEI---ARSYEKGGAACLSILTD-E-----KYFKGS-----F----ENLEAVRSAGVKCPLLCKE------FIVDAWQ 253 (355)
Q Consensus 198 Dp~~i---A~~Ye~~GAaaISVLTD-~-----~fF~GS-----~----edL~~VR~a~v~lPVLrKD------FIIdpyQ 253 (355)
||.++ |+..++.|+++|=++.- | +--.|| . +-+..+|++ +++||-.|= -..+..+
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d~pv~vKiR~G~~~~~~~~~~ 153 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VDVPVTLKIRTGWAPEHRNCVE 153 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cCCceEEEEEccccCCcchHHH
Confidence 44444 55455678888877654 1 112244 3 334566664 788877531 1123445
Q ss_pred HHH-HHHcCCcchHHHHhcC-----CHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEee
Q 018446 254 IYY-ARTKGADAVLLIAAVL-----PDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 254 I~e-Ar~~GADAVLLIaaiL-----~~~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGIN 316 (355)
+.+ +-.+|+|+|.+-...- +..++..+.++.+..++-++. .|.|.++++++++..|++.|+|-
T Consensus 154 ~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 154 IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 554 4578999997765431 223455555666666654443 58899999999975588888774
No 416
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=60.19 E-value=47 Score=33.81 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=52.1
Q ss_pred HHHHHHcCceEEEEecc--------CCCCCCCHHHHHHHHhcCCCCCeec-cccccC-----HHHHHHHHHcCCcchHHH
Q 018446 203 ARSYEKGGAACLSILTD--------EKYFKGSFENLEAVRSAGVKCPLLC-KEFIVD-----AWQIYYARTKGADAVLLI 268 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD--------~~fF~GS~edL~~VR~a~v~lPVLr-KDFIId-----pyQI~eAr~~GADAVLLI 268 (355)
+....+.|..-|.+ ++ +.+..=++.-+..+|+. ..+||.. -|-... +..-.-|.++|||++.+=
T Consensus 245 ve~i~~~Gn~~i~L-~erg~s~yp~~~~~~ldl~~i~~lk~~-~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE 322 (360)
T PRK12595 245 AEYIMSQGNGQIIL-CERGIRTYEKATRNTLDISAVPILKQE-THLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAE 322 (360)
T ss_pred HHHHHHCCCCCEEE-ECCccCCCCCCCCCCcCHHHHHHHHHH-hCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEE
Confidence 33444567655533 33 23444467777788875 7899988 777664 334455788999876542
Q ss_pred ------------HhcCCHHHHHHHHHHHHH
Q 018446 269 ------------AAVLPDLDIRYMTKICKL 286 (355)
Q Consensus 269 ------------aaiL~~~~L~~L~~~A~~ 286 (355)
...|++++|+.|++.++.
T Consensus 323 ~H~dp~~a~~D~~~sl~p~el~~l~~~i~~ 352 (360)
T PRK12595 323 VHPDPAVALSDSAQQMDIPEFDRFLDELKP 352 (360)
T ss_pred ecCCCCCCCCchhhhCCHHHHHHHHHHHHH
Confidence 344777788888766654
No 417
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=60.07 E-value=93 Score=30.89 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=68.0
Q ss_pred HHHHHHHHcCceEEEEeccC------CCCCCC---------HHHHHHHHhcCC--CCCeecc---ccc--cCHHHHHHH-
Q 018446 201 EIARSYEKGGAACLSILTDE------KYFKGS---------FENLEAVRSAGV--KCPLLCK---EFI--VDAWQIYYA- 257 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~------~fF~GS---------~edL~~VR~a~v--~lPVLrK---DFI--IdpyQI~eA- 257 (355)
+.|+..++.|+++|=+.--= ++-+|| .+-++.+|++ + ++||-.| .+- -+..++.+.
T Consensus 79 ~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~pVsvKiR~g~~~~~~~~~~a~~l 157 (312)
T PRK10550 79 ENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLPVTVKVRLGWDSGERKFEIADAV 157 (312)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcceEEEEECCCCCchHHHHHHHHH
Confidence 34455667788777665322 222232 2445566775 5 4899888 321 112344443
Q ss_pred HHcCCcchHHHHhcCCH------HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEe
Q 018446 258 RTKGADAVLLIAAVLPD------LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~------~~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGI 315 (355)
..+|+|+|-+..+.-.+ -+.....++.+.+++-++. .|.|.+++++.++..|++.|+|
T Consensus 158 ~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 158 QQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred HhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 36899999887764321 1444555555666655443 4788999999886568888877
No 418
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.93 E-value=15 Score=36.13 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=81.8
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEE------EeccCCC---CCCCHH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS------ILTDEKY---FKGSFE 228 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaIS------VLTD~~f---F~GS~e 228 (355)
..++.|..++.+ ....|+.=.|-.|-- | ...++| .+ -||+.--. ||-..+| ++|-..
T Consensus 113 T~T~~~v~~~~~------~~~~i~~TRKt~Pg~---R---~~~k~A-v~-~GGg~~HR~~L~d~ilikdnHi~~~g~v~~ 178 (277)
T PRK05742 113 TRARHYADLVAG------TQVKLLDTRKTLPGL---R---LAQKYA-VT-CGGCHNHRIGLYDAFLIKENHIAACGGIAQ 178 (277)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCCch---h---HHHHHH-HH-hcCCccccCCCcccEEecHHHHHHhCCHHH
Confidence 346678777732 236788877777742 2 111222 22 45553322 3333333 444445
Q ss_pred HHHHHHhcCCCCC--eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHH
Q 018446 229 NLEAVRSAGVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR 303 (355)
Q Consensus 229 dL~~VR~a~v~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELer 303 (355)
-+..+|+.....+ |-+ =+.-|+.+|..+|||.|+| .-++.+++++..+... + ...+|+- |.+-+..
T Consensus 179 av~~~r~~~~~~~I~VEv----~tleea~eA~~~gaD~I~L--D~~~~e~l~~~v~~~~--~-~i~leAsGGIt~~ni~~ 249 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEV----ESLDELRQALAAGADIVML--DELSLDDMREAVRLTA--G-RAKLEASGGINESTLRV 249 (277)
T ss_pred HHHHHHHhCCCCeEEEEe----CCHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhC--C-CCcEEEECCCCHHHHHH
Confidence 5667776411111 222 2578999999999999988 6788888888776542 2 4567765 6777777
Q ss_pred HhccCCCeEEEeeC
Q 018446 304 VLGIEGIELIGINN 317 (355)
Q Consensus 304 Al~l~ga~iIGINN 317 (355)
.... |++.|.+-.
T Consensus 250 ~a~t-GvD~Isvg~ 262 (277)
T PRK05742 250 IAET-GVDYISIGA 262 (277)
T ss_pred HHHc-CCCEEEECh
Confidence 7775 899888743
No 419
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.61 E-value=89 Score=30.49 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=81.5
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceE----E--EEeccCC--CCCCC---
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC----L--SILTDEK--YFKGS--- 226 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaa----I--SVLTD~~--fF~GS--- 226 (355)
..++.|..+++.. +.-..|+.=.|..|.- | +.+--..+. ||+.- + +||--.+ .|.|+
T Consensus 103 T~t~~~v~~~~~~----~~~~~i~~TRKt~Pg~---r----~~~k~Av~~-GGg~~HR~gL~d~vlikdnH~~~~g~~~~ 170 (272)
T cd01573 103 TATAEMVAAARAV----NPDIVVATTRKAFPGT---R----KLALKAILA-GGAVPHRLGLSETILVFAEHRAFLGGPEP 170 (272)
T ss_pred HHHHHHHHHHhhc----CCCcEEEEeCCCCccc---h----HHHHHHHHh-cCccccccCCCcceEeehhHHHHhCCchH
Confidence 3467788888643 2235777777777742 2 222222333 34333 1 1332222 24466
Q ss_pred HHHHHHHHhcCCCCC--eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHH
Q 018446 227 FENLEAVRSAGVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM 301 (355)
Q Consensus 227 ~edL~~VR~a~v~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eEL 301 (355)
.+-+..+|+.....+ |-+ -+.-|..+|..+|||.|.|= -+.+.+++++.+.++...-...+|+- |++.+
T Consensus 171 ~~av~~~R~~~~~~~IgVev----~t~eea~~A~~~gaD~I~ld--~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni 244 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV----DSLEEALAAAEAGADILQLD--KFSPEELAELVPKLRSLAPPVLLAAAGGINIENA 244 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEc----CCHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHhccCCCceEEEECCCCHHHH
Confidence 456777776421222 222 24589999999999987663 24566888888877765445566654 67777
Q ss_pred HHHhccCCCeEEEe
Q 018446 302 DRVLGIEGIELIGI 315 (355)
Q Consensus 302 erAl~l~ga~iIGI 315 (355)
...... |++.|.+
T Consensus 245 ~~~~~~-Gvd~I~v 257 (272)
T cd01573 245 AAYAAA-GADILVT 257 (272)
T ss_pred HHHHHc-CCcEEEE
Confidence 777775 8888854
No 420
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.52 E-value=1.4e+02 Score=28.68 Aligned_cols=134 Identities=17% Similarity=0.101 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCceEEEEe---ccCCCCCC-----CHHHHHHHHhcC---CCCCeeccccccCHHHHHHHHHcCCcchHH
Q 018446 199 PVEIARSYEKGGAACLSIL---TDEKYFKG-----SFENLEAVRSAG---VKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVL---TD~~fF~G-----S~edL~~VR~a~---v~lPVLrKDFIIdpyQI~eAr~~GADAVLL 267 (355)
-.+||+...+.|...|=|= ..+..|.| +.+.++.+++.. ..+-.++.=-..+.--|..|...|.|.|-+
T Consensus 22 ~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri 101 (266)
T cd07944 22 VKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRV 101 (266)
T ss_pred HHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEE
Confidence 3478888888888887442 21223333 256777776531 223333333334556688888899998766
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHHH----hccCCCeEEEeeCCCCCcc-ccChhhHHhhhccc
Q 018446 268 IAAVLPDLDIRYMTKICKLLGLTALVEV-----HDEREMDRV----LGIEGIELIGINNRNLETF-EVDNSNTKKLLEGE 337 (355)
Q Consensus 268 IaaiL~~~~L~~L~~~A~~LGLeaLVEV-----H~~eELerA----l~l~ga~iIGINNRdL~Tf-evDl~~t~~L~~~~ 337 (355)
-...=.-+.+..++++|+++|+++.+-. |+.+++... .+. |++.|.+-. |+ -..++.+.++...+
T Consensus 102 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~-g~~~i~l~D----T~G~~~P~~v~~lv~~l 176 (266)
T cd07944 102 AFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEI-KPDVFYIVD----SFGSMYPEDIKRIISLL 176 (266)
T ss_pred ecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhC-CCCEEEEec----CCCCCCHHHHHHHHHHH
Confidence 6555556678889999999999877653 556665543 343 777776653 22 23466666666543
No 421
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=59.43 E-value=95 Score=31.30 Aligned_cols=132 Identities=17% Similarity=0.125 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHH---HHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc---
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV--- 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL---~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai--- 271 (355)
+-.++|+.+.+.|..-|-| -||..+.++. +.+.+.+.+..|. -=.-..+.-|..|..+|+|.|-+-..+
T Consensus 23 ~k~~ia~~L~~~Gv~~IEv----G~p~~~~~~~e~i~~i~~~~~~~~v~-~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~ 97 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEA----GFPIASEGEFEAIKKISQEGLNAEIC-SLARALKKDIDKAIDCGVDSIHTFIATSPI 97 (363)
T ss_pred HHHHHHHHHHHcCCCEEEE----eCCCCChHHHHHHHHHHhcCCCcEEE-EEcccCHHHHHHHHHcCcCEEEEEEcCCHH
Confidence 4568899999999999887 2454554444 4444322222221 111124556888999999987663332
Q ss_pred -----C--C----HHHHHHHHHHHHHcCCcEEEEe-----CCHHHHHH----HhccCCCeEEEeeCCCCCccccChhhHH
Q 018446 272 -----L--P----DLDIRYMTKICKLLGLTALVEV-----HDEREMDR----VLGIEGIELIGINNRNLETFEVDNSNTK 331 (355)
Q Consensus 272 -----L--~----~~~L~~L~~~A~~LGLeaLVEV-----H~~eELer----Al~l~ga~iIGINNRdL~TfevDl~~t~ 331 (355)
| + -+...+.+++|++.|+++-+-. ++.+.+.. +.++ |++-|.+-.-. =...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~-g~~~i~l~DT~---G~~~P~~v~ 173 (363)
T TIGR02090 98 HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA-GADRINIADTV---GVLTPQKME 173 (363)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC-CCCEEEEeCCC---CccCHHHHH
Confidence 1 1 1345678899999999876655 45565554 3444 78877776522 234566666
Q ss_pred hhhcccc
Q 018446 332 KLLEGER 338 (355)
Q Consensus 332 ~L~~~~~ 338 (355)
++...++
T Consensus 174 ~li~~l~ 180 (363)
T TIGR02090 174 ELIKKLK 180 (363)
T ss_pred HHHHHHh
Confidence 6665433
No 422
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.41 E-value=57 Score=31.78 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCceEEEEecc-----CCCCCC----CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 199 PVEIARSYEKGGAACLSILTD-----EKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD-----~~fF~G----S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
..++|+...+.|+..+=+=.+ +..|+| .+..|+++++. ..+|++. =+.|+.|+..+..+ +|.+-+=+
T Consensus 43 ~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~-~Gl~~~t--e~~d~~~~~~l~~~-vd~~kIga 118 (266)
T PRK13398 43 MVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDK-YNLPVVT--EVMDTRDVEEVADY-ADMLQIGS 118 (266)
T ss_pred HHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHH-cCCCEEE--eeCChhhHHHHHHh-CCEEEECc
Confidence 458889999999998777633 677887 24455555553 6889988 36789999999888 88544444
Q ss_pred hcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhc
Q 018446 270 AVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLG 306 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerAl~ 306 (355)
.-+.. ..|++.+.++|+-+++.-. +.+|+..|.+
T Consensus 119 ~~~~n---~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e 155 (266)
T PRK13398 119 RNMQN---FELLKEVGKTKKPILLKRGMSATLEEWLYAAE 155 (266)
T ss_pred ccccC---HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 44444 4577888899999999987 7888887763
No 423
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=59.23 E-value=20 Score=35.81 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=82.8
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEE-----EEeccCCC--CCCCH-HH
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACL-----SILTDEKY--FKGSF-EN 229 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaI-----SVLTD~~f--F~GS~-ed 229 (355)
..++.|.+++.+ ....|+.=.|..|-- | ....+| ...-||..-- +||--.+| |-|++ +-
T Consensus 132 T~T~~~v~~~~~------~~~~i~~TRKT~Pg~---R---~l~k~A-V~~GGG~~HR~gLsd~iLikdNHi~~~G~i~~a 198 (296)
T PRK09016 132 TEVRRYVELLAG------TNTQLLDTRKTLPGL---R---SALKYA-VLCGGGANHRLGLSDAFLIKENHIIASGSIRQA 198 (296)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCCch---h---HHHHHH-HHhcCcccccCCchhhhccCHHHHHHhCcHHHH
Confidence 346778887732 236778877777742 1 122222 3333333321 22222222 23554 55
Q ss_pred HHHHHhcCCCCC--eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHH
Q 018446 230 LEAVRSAGVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV 304 (355)
Q Consensus 230 L~~VR~a~v~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerA 304 (355)
+..+|+.....| |-+. +.-|..+|..+|||.|+| .=++++++++.+++... .+++|+. |++-+...
T Consensus 199 v~~~r~~~~~~kIeVEv~----sleea~ea~~~gaDiI~L--Dn~s~e~~~~av~~~~~---~~~ieaSGGI~~~ni~~y 269 (296)
T PRK09016 199 VEKAFWLHPDVPVEVEVE----NLDELDQALKAGADIIML--DNFTTEQMREAVKRTNG---RALLEVSGNVTLETLREF 269 (296)
T ss_pred HHHHHHhCCCCCEEEEeC----CHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHhhcC---CeEEEEECCCCHHHHHHH
Confidence 667775422222 2333 578999999999999887 44567888888886543 7899997 67777776
Q ss_pred hccCCCeEEEeeC
Q 018446 305 LGIEGIELIGINN 317 (355)
Q Consensus 305 l~l~ga~iIGINN 317 (355)
... |+++|.+-.
T Consensus 270 A~t-GVD~Is~ga 281 (296)
T PRK09016 270 AET-GVDFISVGA 281 (296)
T ss_pred Hhc-CCCEEEeCc
Confidence 665 999998753
No 424
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=59.16 E-value=9 Score=34.28 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHH------HHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFEN------LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~ed------L~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
..+......++|+++|=+- ++.. ..-+. |..+.+. .+.|++-.| .+++ |..+|||+|=|=-.-+
T Consensus 14 ~~~~l~~~~~~gv~~v~lR-~k~~--~~~~~~~~a~~l~~~~~~-~~~~liin~----~~~l--a~~~~~dGvHl~~~~~ 83 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLR-EKDL--SDEELLELARRLAELCQK-YGVPLIIND----RVDL--ALELGADGVHLGQSDL 83 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE--SSS---HHHHHHHHHHHHHHHHH-TTGCEEEES-----HHH--HHHCT-SEEEEBTTSS
T ss_pred HHHHHHHHHHCCCcEEEEc-CCCC--CccHHHHHHHHHHHHhhc-ceEEEEecC----CHHH--HHhcCCCEEEeccccc
Confidence 4556666667786665443 2211 12222 2222322 356766555 5566 7779999998766666
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 273 ~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
+..+...++ .-++-.=+-+||.+|+..+... |++.+++---
T Consensus 84 ~~~~~r~~~----~~~~~ig~S~h~~~e~~~a~~~-g~dYv~~gpv 124 (180)
T PF02581_consen 84 PPAEARKLL----GPDKIIGASCHSLEEAREAEEL-GADYVFLGPV 124 (180)
T ss_dssp SHHHHHHHH----TTTSEEEEEESSHHHHHHHHHC-TTSEEEEETS
T ss_pred chHHhhhhc----ccceEEEeecCcHHHHHHhhhc-CCCEEEECCc
Confidence 554433332 2245555789999999999886 8999998654
No 425
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=59.15 E-value=24 Score=36.19 Aligned_cols=122 Identities=13% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHc--CceEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeeccc-cccCHHHHHHHHHcCC-cchHHHH
Q 018446 196 DFDPVEIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKE-FIVDAWQIYYARTKGA-DAVLLIA 269 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~--GAaaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKD-FIIdpyQI~eAr~~GA-DAVLLIa 269 (355)
.+++.+..+.|... ... |-.+ |..+-..+++.+..+++. . ++||.--| |.-++.++.++...|| |+|++=+
T Consensus 260 ~~t~~eai~~~~~l~e~~~-i~~i-EdPl~~~D~eg~~~L~~~-~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~ 336 (408)
T cd03313 260 KLTSEELIDYYKELVKKYP-IVSI-EDPFDEDDWEGWAKLTAK-LGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKV 336 (408)
T ss_pred ccCHHHHHHHHHHHHHhCC-cEEE-EeCCCCcCHHHHHHHHHh-cCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcc
Confidence 46777666555542 112 3333 556788999999999985 5 89999999 5568999999887765 7776633
Q ss_pred h-cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHH--HhccCCCeEEEeeCCCCCcccc
Q 018446 270 A-VLPDLDIRYMTKICKLLGLTALVEVHDEREMDR--VLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 270 a-iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELer--Al~l~ga~iIGINNRdL~Tfev 325 (355)
. +=+-.+..+..++|+..|+.+.+- |..-|-+- +.++ -+|.+.+.++|-..
T Consensus 337 ~~iGGite~~~ia~lA~~~G~~~~~s-h~sget~d~~~adl----ava~~~~~ik~G~~ 390 (408)
T cd03313 337 NQIGTLTETIEAIKLAKKNGYGVVVS-HRSGETEDTFIADL----AVALGAGQIKTGAP 390 (408)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEEcc-CCCchhHHHHHHHH----HHHhCcCccccCCC
Confidence 3 334557788899999999988762 43333333 2232 34667777776653
No 426
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=58.97 E-value=19 Score=35.08 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=43.6
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeeccc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKE 246 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKD 246 (355)
++..||+=+- + + ..+..++++.+++.||+|+.|.+ |.||..+. +++..+.++ +++||+-=+
T Consensus 75 ~~~pvi~gv~--~-~------t~~~i~~~~~a~~~Gadav~~~p-P~y~~~~~~~i~~~f~~va~~-~~lpi~lYn 139 (303)
T PRK03620 75 GRVPVIAGAG--G-G------TAQAIEYAQAAERAGADGILLLP-PYLTEAPQEGLAAHVEAVCKS-TDLGVIVYN 139 (303)
T ss_pred CCCcEEEecC--C-C------HHHHHHHHHHHHHhCCCEEEECC-CCCCCCCHHHHHHHHHHHHHh-CCCCEEEEc
Confidence 4567888772 1 2 23678999999999999997755 67887764 456667775 789976433
No 427
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=58.78 E-value=1.2e+02 Score=28.36 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCcchHHHHhcCC-----------HHHHHHHHHHHHHcCCcEEEEeC---------CHHHHHHHhccCC-
Q 018446 251 AWQIYYARTKGADAVLLIAAVLP-----------DLDIRYMTKICKLLGLTALVEVH---------DEREMDRVLGIEG- 309 (355)
Q Consensus 251 pyQI~eAr~~GADAVLLIaaiL~-----------~~~L~~L~~~A~~LGLeaLVEVH---------~~eELerAl~l~g- 309 (355)
...|..|..+||+.|.+-...-. -+.+..+.++|...|+...+|.| +.+++.+.++.-+
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~ 167 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKE 167 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 34567788888887766444332 14577888888899999999964 5567777765323
Q ss_pred CeEEEee
Q 018446 310 IELIGIN 316 (355)
Q Consensus 310 a~iIGIN 316 (355)
-+-+|++
T Consensus 168 ~~~~g~~ 174 (279)
T cd00019 168 KPRVGVC 174 (279)
T ss_pred CCCeEEE
Confidence 3445543
No 428
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=58.60 E-value=12 Score=36.39 Aligned_cols=37 Identities=5% Similarity=0.086 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcc
Q 018446 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGI 307 (355)
Q Consensus 271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l 307 (355)
.++.+++++|+++|+.+|++.+-|+.....+..++..
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~ 104 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKS 104 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHh
Confidence 6899999999999999999999999999999998865
No 429
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=58.35 E-value=17 Score=35.58 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCCccc
Q 018446 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (355)
Q Consensus 274 ~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~l~ga~iIGINNRdL~Tfe 324 (355)
+..|+.|.+..+.+||-++.|||+...++.+.+. ++++-|-.|+-..+.
T Consensus 74 d~~L~~l~~v~~~~glpv~tEv~~~~~~~~~~d~--vd~lqIgAr~~~n~~ 122 (270)
T PF00793_consen 74 DPGLDILSEVKEGLGLPVATEVLDPEQAEYVADL--VDWLQIGARLMENQD 122 (270)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEESSGGGHHHHHTT--ESEEEE-GGGTTCHH
T ss_pred CccchhHHHHHhhhCCeeeEEecCcccHHHHHhc--CcEEEECcchhcCHH
Confidence 4459999999999999999999999999999875 899999999877643
No 430
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=58.16 E-value=98 Score=30.32 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=77.9
Q ss_pred HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC-CeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHH
Q 018446 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l-PVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~ 279 (355)
.+++...+.| .++-| .|...+..+++++++. +|+.---+..+-+|.+|..+|- .+..+=+.++|+.
T Consensus 42 ~v~~~l~~~G-~g~~v--------aS~~E~~~~~~~G~~~~~I~~~~p~k~~~~l~~a~~~g~----~~~~ids~~el~~ 108 (373)
T cd06828 42 AILKLLAEEG-LGADV--------VSGGELYRALKAGFPPERIVFTGNGKSDEELELALELGI----LRINVDSLSELER 108 (373)
T ss_pred HHHHHHHHcC-CcEEE--------eCHHHHHHHHHcCCCcccEEEeCCCCCHHHHHHHHHcCC----eEEEECCHHHHHH
Confidence 4777777777 44333 6778888888876654 6777777778889999999872 2333346778999
Q ss_pred HHHHHHHcC--CcEEEEeC----------------------CHHHHHHHh----ccCCCeEEEe------eCCCCCcccc
Q 018446 280 MTKICKLLG--LTALVEVH----------------------DEREMDRVL----GIEGIELIGI------NNRNLETFEV 325 (355)
Q Consensus 280 L~~~A~~LG--LeaLVEVH----------------------~~eELerAl----~l~ga~iIGI------NNRdL~Tfev 325 (355)
+.++|.++| ...++-|. +.+|+..++ .+.+.+++|| +..|...+.-
T Consensus 109 l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~e~~~~~~~~~~~~~l~l~Gi~~H~gs~~~~~~~~~~ 188 (373)
T cd06828 109 LGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQILDLEPFVE 188 (373)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCHHHHHH
Confidence 999998765 34555442 234444433 2247778777 3334444555
Q ss_pred ChhhHHhhhcc
Q 018446 326 DNSNTKKLLEG 336 (355)
Q Consensus 326 Dl~~t~~L~~~ 336 (355)
.++...++...
T Consensus 189 ~~~~~~~~~~~ 199 (373)
T cd06828 189 AAEKLLDLAAE 199 (373)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 431
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=58.03 E-value=1.7e+02 Score=27.80 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=54.0
Q ss_pred CHHHHHHHHhcCCCCCee--ccccc--cCH----------HHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcE
Q 018446 226 SFENLEAVRSAGVKCPLL--CKEFI--VDA----------WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTA 291 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVL--rKDFI--Idp----------yQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLea 291 (355)
+.+-|..+|+.....|+. ..+.- ..+ ..+..++..+++++.+-...+- .-..+++.+++.||.+
T Consensus 184 ~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~Gl~v 261 (290)
T cd08607 184 DADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEIAVNFAQAEELLGVNLHSEDLL--KDPSQIELAKSLGLVV 261 (290)
T ss_pred CHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHHHHHHHHHcCCceeEechhhhh--cChHHHHHHHHcCCEE
Confidence 467777787654455643 22211 001 1233456677776654433221 1136899999999999
Q ss_pred EEE-e--CCHHHHHHHhccCCCeEEEee
Q 018446 292 LVE-V--HDEREMDRVLGIEGIELIGIN 316 (355)
Q Consensus 292 LVE-V--H~~eELerAl~l~ga~iIGIN 316 (355)
.+= | .+.+++++.+++ |++-|--|
T Consensus 262 ~~wTv~~n~~~~~~~l~~~-GVdgIiTD 288 (290)
T cd08607 262 FCWGDDLNDPENRKKLKEL-GVDGLIYD 288 (290)
T ss_pred EEECCCCCCHHHHHHHHHc-CCCEEEec
Confidence 874 4 789999999887 88766443
No 432
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.03 E-value=12 Score=36.85 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCcEEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 288 GLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 288 GLeaLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
++-.-|||||.+|+..|++. |+++|+..|-
T Consensus 189 ~~~I~VEv~tleea~eA~~~-gaD~I~LD~~ 218 (277)
T PRK05742 189 GKPVEVEVESLDELRQALAA-GADIVMLDEL 218 (277)
T ss_pred CCeEEEEeCCHHHHHHHHHc-CCCEEEECCC
Confidence 47789999999999999997 9999988644
No 433
>PRK08999 hypothetical protein; Provisional
Probab=57.94 E-value=23 Score=34.03 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCceEEEEeccCC----CCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 200 VEIARSYEKGGAACLSILTDEK----YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~----fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
.+.++.-..+|+++|=.-. +. -+..-...|..+.+. .++|++-.|+ + ..|..+|||+|=|= ..
T Consensus 147 ~~~~~~~l~~g~~~vqlR~-k~~~~~~~~~~~~~l~~~~~~-~~~~liind~----~--~la~~~~~~GvHl~-----~~ 213 (312)
T PRK08999 147 LARLERALAAGIRLIQLRA-PQLPPAAYRALARAALGLCRR-AGAQLLLNGD----P--ELAEDLGADGVHLT-----SA 213 (312)
T ss_pred HHHHHHHHHCCCcEEEEeC-CCCCHHHHHHHHHHHHHHHHH-hCCEEEEECc----H--HHHHhcCCCEEEcC-----hh
Confidence 3445454578887765433 21 111122233333332 3567766654 3 44888999988554 33
Q ss_pred HHHHHHHHHHHcCCc--EEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 276 DIRYMTKICKLLGLT--ALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 276 ~L~~L~~~A~~LGLe--aLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
++.... ++.+|-+ .=+-+||.+|+.+|... |++.|++---
T Consensus 214 d~~~~~--~r~~~~~~~ig~S~h~~~~~~~a~~~-~~dyi~~gpv 255 (312)
T PRK08999 214 QLAALA--ARPLPAGRWVAASCHDAEELARAQRL-GVDFAVLSPV 255 (312)
T ss_pred hcChHh--hccCCCCCEEEEecCCHHHHHHHHhc-CCCEEEECCC
Confidence 332211 1225443 34567999999999886 9999998653
No 434
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=57.90 E-value=17 Score=34.46 Aligned_cols=107 Identities=21% Similarity=0.380 Sum_probs=71.1
Q ss_pred eEEeEeeecCCCCCCCCCCC-CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccc-cCHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDF-DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI-VDAWQIY 255 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~-Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFI-IdpyQI~ 255 (355)
.|+.|+--..+- . +. ....+.+.+.+.|. .+--| =||-.+..|..+++. | -|+| ||.-=|.
T Consensus 121 ~l~lEitE~~~~----~-~~~~~~~~l~~L~~~G~---~ialD--DFGtG~ssl~~L~~l----~---~d~iKID~~fi~ 183 (256)
T COG2200 121 RLVLEITESALI----D-DLDTALALLRQLRELGV---RIALD--DFGTGYSSLSYLKRL----P---PDILKIDRSFVR 183 (256)
T ss_pred eEEEEEeCchhh----c-CHHHHHHHHHHHHHCCC---eEEEE--CCCCCHHHHHHHhhC----C---CCeEEECHHHHh
Confidence 799999776652 1 22 24456677888883 33334 499999999999763 2 2333 3333332
Q ss_pred HHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeE
Q 018446 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIEL 312 (355)
Q Consensus 256 eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~i 312 (355)
.--...-+. .-++.+++.|+++|+++++| |.|.++++...++ |++.
T Consensus 184 ~i~~~~~~~----------~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~~-G~~~ 230 (256)
T COG2200 184 DLETDARDQ----------AIVRAIVALAHKLGLTVVAEGVETEEQLDLLREL-GCDY 230 (256)
T ss_pred hcccCcchH----------HHHHHHHHHHHHCCCEEEEeecCCHHHHHHHHHc-CCCe
Confidence 211111111 34678999999999999999 9999999999887 8764
No 435
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=57.61 E-value=31 Score=32.25 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHcCceEEEEe-ccCCC---CCCCHHHHHHHHhcCCCCC----eeccccccCHHHHHHHHHcCCcchHHH
Q 018446 197 FDPVEIARSYEKGGAACLSIL-TDEKY---FKGSFENLEAVRSAGVKCP----LLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVL-TD~~f---F~GS~edL~~VR~a~v~lP----VLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
++..+..+.++++|+..|=+= -|..| |.-+++.++.+|+. +++| ++.+|.. ..|.+-..+|||.|.+-
T Consensus 12 ~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~P~---~~i~~~~~~g~~~i~~H 87 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVENPE---RYIEEFAEAGADYITFH 87 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSSGG---GHHHHHHHHT-SEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc-CCCcEEEEeeeccHH---HHHHHHHhcCCCEEEEc
Confidence 567788899999999988773 34444 55678999999986 7777 4555532 34555567799999998
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHH---HHhccCCCeEEEeeCCCC
Q 018446 269 AAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD---RVLGIEGIELIGINNRNL 320 (355)
Q Consensus 269 aaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELe---rAl~l~ga~iIGINNRdL 320 (355)
+...+ ++.+++++.++.|+.+=|=+.-...++ ..+. ..+.|-|=.-+.
T Consensus 88 ~E~~~--~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~--~vD~VlvMsV~P 138 (201)
T PF00834_consen 88 AEATE--DPKETIKYIKEAGIKAGIALNPETPVEELEPYLD--QVDMVLVMSVEP 138 (201)
T ss_dssp GGGTT--THHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC--CSSEEEEESS-T
T ss_pred ccchh--CHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh--hcCEEEEEEecC
Confidence 88654 678999999999999888776544443 4343 356665544443
No 436
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=56.85 E-value=22 Score=34.07 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCC----HHHHHHHHhcCCCCCeeccc
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKE 246 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS----~edL~~VR~a~v~lPVLrKD 246 (355)
.+..++|+.+++.||+++.+.. |.||..+ .+++..+.++ +++||+-=+
T Consensus 83 ~~~i~~a~~a~~~G~d~v~~~p-P~~~~~~~~~i~~~~~~ia~~-~~~pv~lYn 134 (292)
T PRK03170 83 AEAIELTKFAEKAGADGALVVT-PYYNKPTQEGLYQHFKAIAEA-TDLPIILYN 134 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-CcCCCCCHHHHHHHHHHHHhc-CCCCEEEEE
Confidence 3788999999999999999876 6677765 4555667664 688877443
No 437
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=56.84 E-value=1.6e+02 Score=29.05 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCC-eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHH----HHHHHHHHHcCCcEE---------------EEe-CC
Q 018446 239 KCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI----RYMTKICKLLGLTAL---------------VEV-HD 297 (355)
Q Consensus 239 ~lP-VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L----~~L~~~A~~LGLeaL---------------VEV-H~ 297 (355)
++| .|.=|=. +.-.+.+|...|.+.|.+=.+-|+.++. +++.++|+..|...= ... ||
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~ 155 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAP 155 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCC
Confidence 667 5777888 7778999999999999999999998654 445677776543221 123 89
Q ss_pred HHHHHHHhccCCCeEEEeeCCCC----Cc--cccChhhHHhhhcc
Q 018446 298 EREMDRVLGIEGIELIGINNRNL----ET--FEVDNSNTKKLLEG 336 (355)
Q Consensus 298 ~eELerAl~l~ga~iIGINNRdL----~T--fevDl~~t~~L~~~ 336 (355)
.+|+.++... |++.|++..=+. .| =.+|++.-.++.+.
T Consensus 156 peea~~f~~t-gvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~ 199 (293)
T PRK07315 156 IEDAKAMVET-GIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEA 199 (293)
T ss_pred HHHHHHHHHc-CCCEEeeccccccccCCCCCCcCCHHHHHHHHHh
Confidence 9999999975 999999983333 22 35788877777654
No 438
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=56.81 E-value=54 Score=33.14 Aligned_cols=112 Identities=22% Similarity=0.225 Sum_probs=72.1
Q ss_pred HHHHHHHHHcC-ceEEEEeccCCCCCCCHHHHHHHHhcCCCCCe-----eccccccCHHHHHHHHHcCCcchHHHHhcC-
Q 018446 200 VEIARSYEKGG-AACLSILTDEKYFKGSFENLEAVRSAGVKCPL-----LCKEFIVDAWQIYYARTKGADAVLLIAAVL- 272 (355)
Q Consensus 200 ~~iA~~Ye~~G-AaaISVLTD~~fF~GS~edL~~VR~a~v~lPV-----LrKDFIIdpyQI~eAr~~GADAVLLIaaiL- 272 (355)
..+|++-.+.| +-++|-.. .-++|++.... ..+.|+ ..||--+-.-.+..|..+|++|+.+-+...
T Consensus 84 ~~~AraA~~~gi~~~lss~s-----~~s~e~v~~~~--~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~ 156 (344)
T cd02922 84 LNLARAAGKHGILQMISTNA-----SCSLEEIVDAR--PPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPV 156 (344)
T ss_pred HHHHHHHHHcCCCEEecCcc-----cCCHHHHHHhc--CCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 46777777777 44454333 23777764331 123465 456666667788889999999988854443
Q ss_pred -----------------------------------------CHHHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHhccCCC
Q 018446 273 -----------------------------------------PDLDIRYMTKICKLLGLT-ALVEVHDEREMDRVLGIEGI 310 (355)
Q Consensus 273 -----------------------------------------~~~~L~~L~~~A~~LGLe-aLVEVH~~eELerAl~l~ga 310 (355)
+....+.+-.+....++- .+=+|.+.+++.++.++ |+
T Consensus 157 ~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~-G~ 235 (344)
T cd02922 157 LGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY-GV 235 (344)
T ss_pred cCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc-CC
Confidence 001123344445555555 55589999999999997 99
Q ss_pred eEEEeeCCC
Q 018446 311 ELIGINNRN 319 (355)
Q Consensus 311 ~iIGINNRd 319 (355)
+.|-|-|..
T Consensus 236 d~I~vsnhg 244 (344)
T cd02922 236 DGIVLSNHG 244 (344)
T ss_pred CEEEEECCC
Confidence 988887754
No 439
>PRK06207 aspartate aminotransferase; Provisional
Probab=56.68 E-value=14 Score=36.92 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=39.2
Q ss_pred cccccCHHHHHHHHHcCCcchHHH------HhcCCHHHHHHHHHHHHHcCCcEE
Q 018446 245 KEFIVDAWQIYYARTKGADAVLLI------AAVLPDLDIRYMTKICKLLGLTAL 292 (355)
Q Consensus 245 KDFIIdpyQI~eAr~~GADAVLLI------aaiL~~~~L~~L~~~A~~LGLeaL 292 (355)
.||.+|.-++.++...+.++|++. -.+++.+++++|+++|++.|+-.+
T Consensus 162 ~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI 215 (405)
T PRK06207 162 KRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVI 215 (405)
T ss_pred cCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 368999999988877788776665 456899999999999999987544
No 440
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=55.67 E-value=32 Score=35.44 Aligned_cols=94 Identities=23% Similarity=0.311 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCC------CHHHHHHHHhcCCC-CCeeccccccCHHHHHHHHH-cCCcchHHH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYART-KGADAVLLI 268 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G------S~edL~~VR~a~v~-lPVLrKDFIIdpyQI~eAr~-~GADAVLLI 268 (355)
-+-+++|+..+++|++-|-|---...=.| +++.++.||+. +. +||+..-=|...--+..+.. -|||+|+.-
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~-~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVREN-VPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHh-CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 45679999999999999999876665555 68999999996 66 99999999999888888887 999999754
Q ss_pred HhcC--------------CHHHHHHHHHHHHHcCCcE
Q 018446 269 AAVL--------------PDLDIRYMTKICKLLGLTA 291 (355)
Q Consensus 269 aaiL--------------~~~~L~~L~~~A~~LGLea 291 (355)
=+.| +.+-..+.+++|.++|-..
T Consensus 234 rglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~~ 270 (358)
T KOG2335|consen 234 RGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGLS 270 (358)
T ss_pred chhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 4433 2334567889999999443
No 441
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=55.59 E-value=13 Score=37.50 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHcCceEEEEe----ccCCCCCCCHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 197 FDPVEIARSYEKGGAACLSIL----TDEKYFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVL----TD~~fF~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
.++.+ |+...+.|+++|=|= |.-.|-.-+.+-|..+|++ +-++||+..==|-.+.-|..|.++|||+|.+=-.
T Consensus 234 ~~~~d-a~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~ 311 (356)
T PF01070_consen 234 LSPED-AKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRP 311 (356)
T ss_dssp -SHHH-HHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHH
T ss_pred ccHHH-HHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccH
Confidence 34554 455566799999886 3333555668899999985 2369999999999999999999999999976433
No 442
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.23 E-value=17 Score=35.12 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCC-CH----HHHHHHHhcCCCCCee
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKG-SF----ENLEAVRSAGVKCPLL 243 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~G-S~----edL~~VR~a~v~lPVL 243 (355)
.+..++|+.+++.||+|+.|.+ |.||.. +. +++..|.+ ++||+
T Consensus 78 ~~ai~~a~~a~~~Gad~v~v~~-P~y~~~~~~~~i~~yf~~v~~---~lpv~ 125 (279)
T cd00953 78 EESIELARAAKSFGIYAIASLP-PYYFPGIPEEWLIKYFTDISS---PYPTF 125 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC-CcCCCCCCHHHHHHHHHHHHh---cCCEE
Confidence 3778999999999999999887 667774 43 44455543 56655
No 443
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.11 E-value=25 Score=35.01 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=84.1
Q ss_pred CCCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCce----EE--EEeccCCC--CCCCH-H
Q 018446 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA----CL--SILTDEKY--FKGSF-E 228 (355)
Q Consensus 158 pp~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAa----aI--SVLTD~~f--F~GS~-e 228 (355)
..++.|.+++.+ ....|+.=.|..|-- | ..+..... .||+. .| +||--.+| |-|++ +
T Consensus 120 T~T~~~V~~~~~------~~~~i~~TRKT~PG~---R----~l~k~AV~-~GGG~~HR~gLsD~iLIkdNHi~~~g~i~~ 185 (290)
T PRK06559 120 SMTAAYVEALGD------DRIKVFDTRKTTPNL---R----LFEKYAVR-VGGGYNHRFNLSDAIMLKDNHIAAVGSVQK 185 (290)
T ss_pred HHHHHHHHHhcC------CCeEEEeecCCCCcc---h----HHHHHHHH-hcCCcccCCCCcceEEEcHHHHHhhccHHH
Confidence 346778887732 236888777777742 2 12211122 34433 11 34444443 34554 6
Q ss_pred HHHHHHhcCC-CCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHH
Q 018446 229 NLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV 304 (355)
Q Consensus 229 dL~~VR~a~v-~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELerA 304 (355)
-+..+|+... ..+|--- .=+.-|..+|..+|||.|+| .=++++++++.++..+. .+++|+. |.+-+...
T Consensus 186 av~~~r~~~~~~~kIeVE--v~tleea~~a~~agaDiImL--Dnmspe~l~~av~~~~~---~~~leaSGGI~~~ni~~y 258 (290)
T PRK06559 186 AIAQARAYAPFVKMVEVE--VESLAAAEEAAAAGADIIML--DNMSLEQIEQAITLIAG---RSRIECSGNIDMTTISRF 258 (290)
T ss_pred HHHHHHHhCCCCCeEEEE--CCCHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhcC---ceEEEEECCCCHHHHHHH
Confidence 6777776411 1111100 02568999999999999876 55678888888876653 7899998 77777776
Q ss_pred hccCCCeEEEeeC
Q 018446 305 LGIEGIELIGINN 317 (355)
Q Consensus 305 l~l~ga~iIGINN 317 (355)
... |+++|-+--
T Consensus 259 A~t-GVD~Is~ga 270 (290)
T PRK06559 259 RGL-AIDYVSSGS 270 (290)
T ss_pred Hhc-CCCEEEeCc
Confidence 665 899887643
No 444
>PRK12376 putative translaldolase; Provisional
Probab=54.89 E-value=41 Score=32.50 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=42.2
Q ss_pred CCHHHH---HHHHHHcCceEEEEeccCC--CCCCCHHHHHHHHhc---CCCCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 197 FDPVEI---ARSYEKGGAACLSILTDEK--YFKGSFENLEAVRSA---GVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 197 ~Dp~~i---A~~Ye~~GAaaISVLTD~~--fF~GS~edL~~VR~a---~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
|++... +.++..+||+.+|.....- .-.-....+..+++. ..+.=||.= -+=+++|+.++..+|||+|.+-
T Consensus 121 fs~~Qa~~a~~A~ag~ga~yispfvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaA-SiR~~~~v~~a~~~Gad~vTvp 199 (236)
T PRK12376 121 FTIEQVKEVVDALTPGVPAIVSVFAGRIADTGVDPVPLMKEALAICHSKPGVELLWA-SPREVYNIIQADQLGCDIITVT 199 (236)
T ss_pred cCHHHHHHHHHHhcCCCCeEEEEecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEE-ecCCHHHHHHHHHcCCCEEEcC
Confidence 455543 5556655899999654321 111123444444432 011112211 3568999999999999998765
Q ss_pred HhcC
Q 018446 269 AAVL 272 (355)
Q Consensus 269 aaiL 272 (355)
..+|
T Consensus 200 ~~v~ 203 (236)
T PRK12376 200 PDVL 203 (236)
T ss_pred HHHH
Confidence 4443
No 445
>PRK06801 hypothetical protein; Provisional
Probab=54.78 E-value=50 Score=32.66 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHcCceEEEEec--cCCCCCC----CHHHHHHHHhcCCCCCeec-cccccCHHHHHHHHHcCCcchHHH
Q 018446 196 DFDPVEIARSYEKGGAACLSILT--DEKYFKG----SFENLEAVRSAGVKCPLLC-KEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLT--D~~fF~G----S~edL~~VR~a~v~lPVLr-KDFIIdpyQI~eAr~~GADAVLLI 268 (355)
..||.+..+.+++-|+++|.|-. =-.-+.| +++-|+.+++. +++|++. =-=.++.-|+.++..+|++.|-+.
T Consensus 155 ~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~-~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 155 FTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ-TGLPLVLHGGSGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred CCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence 44787777777689999998821 1112233 78999999985 7899643 344688899999999999999887
Q ss_pred HhcCC
Q 018446 269 AAVLP 273 (355)
Q Consensus 269 aaiL~ 273 (355)
..+..
T Consensus 234 T~~~~ 238 (286)
T PRK06801 234 TGMSQ 238 (286)
T ss_pred hHHHH
Confidence 76653
No 446
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.66 E-value=1e+02 Score=32.94 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCC-------------HHHHHHHHhcCCCCC--eecc---ccccC-------HH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGS-------------FENLEAVRSAGVKCP--LLCK---EFIVD-------AW 252 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS-------------~edL~~VR~a~v~lP--VLrK---DFIId-------py 252 (355)
|-..+|..+.+.|...|=+ | +|+ ++-|+.+|+...+.| .|+. =+... ..
T Consensus 28 d~l~ia~~ld~~G~~siE~-----~-GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 28 DMVGACEDIDNAGYWSVEC-----W-GGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred HHHHHHHHHHhcCCCEEEe-----c-CCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 6678999999999988876 2 332 345889988644444 2332 11111 34
Q ss_pred HHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-------eCCHHHHHH----HhccCCCeEEEeeCCCCC
Q 018446 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-------VHDEREMDR----VLGIEGIELIGINNRNLE 321 (355)
Q Consensus 253 QI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-------VH~~eELer----Al~l~ga~iIGINNRdL~ 321 (355)
-|..|..+|.|.+=+-.++=+-..++..++.+++.|..+-.. +||.+.+.. +.++ |++.|.|-.-
T Consensus 102 fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~-Gad~I~IkDt--- 177 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDM-GADSICIKDM--- 177 (499)
T ss_pred HHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHc-CCCEEEeCCC---
Confidence 588899999998554444434467888899999999977444 588776433 4454 8888877431
Q ss_pred ccccChhhHHhhhcccc
Q 018446 322 TFEVDNSNTKKLLEGER 338 (355)
Q Consensus 322 TfevDl~~t~~L~~~~~ 338 (355)
.=-..+..+.+|...++
T Consensus 178 aGll~P~~~~~LV~~Lk 194 (499)
T PRK12330 178 AALLKPQPAYDIVKGIK 194 (499)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 11234556666655443
No 447
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=54.56 E-value=53 Score=31.96 Aligned_cols=94 Identities=23% Similarity=0.363 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~ 279 (355)
.+.|+..+++||.+|-+.|..-+ -....|+++ +++|+|. |+|. =..+.+..|+.-|.|.+--.+=+ ..
T Consensus 65 ~~~a~~Le~~GAd~i~l~~NT~H-----~~~d~iq~~-~~iPllh---Iida-Ta~~ik~~g~kkvgLLgT~~Tm~--~~ 132 (230)
T COG1794 65 IDAAKKLERAGADFIVLPTNTMH-----KVADDIQKA-VGIPLLH---IIDA-TAKAIKAAGAKKVGLLGTRFTME--QG 132 (230)
T ss_pred HHHHHHHHhcCCCEEEEeCCcHH-----HHHHHHHHh-cCCCeeh---HHHH-HHHHHHhcCCceeEEeeccchHH--hH
Confidence 46789999999999999987543 356677875 8999996 4443 34556667999998887754432 23
Q ss_pred HH-HHHHHcCCcEEE-EeCCHHHHHHHh
Q 018446 280 MT-KICKLLGLTALV-EVHDEREMDRVL 305 (355)
Q Consensus 280 L~-~~A~~LGLeaLV-EVH~~eELerAl 305 (355)
|+ +.-...|++++| +=|+.+++.+.+
T Consensus 133 fY~~~l~~~gievvvPdd~~q~~v~~iI 160 (230)
T COG1794 133 FYRKRLEEKGIEVVVPDDDEQAEVNRII 160 (230)
T ss_pred HHHHHHHHCCceEecCCHHHHHHHHHHH
Confidence 44 667789998886 233333444443
No 448
>PRK07777 aminotransferase; Validated
Probab=54.52 E-value=12 Score=36.76 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=50.4
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCCCCCeecc--ccccCHHHHHHHHHcCCcchHHH------HhcCCHHHHHHHHHHHHH
Q 018446 215 SILTDEKYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVLLI------AAVLPDLDIRYMTKICKL 286 (355)
Q Consensus 215 SVLTD~~fF~GS~edL~~VR~a~v~lPVLrK--DFIIdpyQI~eAr~~GADAVLLI------aaiL~~~~L~~L~~~A~~ 286 (355)
.|++....|.+-..-+.......+.+|+... +|.+|.-++.++..-..++|++. -.+++.+++++|+++|++
T Consensus 111 ~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~ 190 (387)
T PRK07777 111 EVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVE 190 (387)
T ss_pred EEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHh
Confidence 3555555565433222211111123555543 57889999988765567776653 356788899999999999
Q ss_pred cCCcEEEE
Q 018446 287 LGLTALVE 294 (355)
Q Consensus 287 LGLeaLVE 294 (355)
.|+-.++.
T Consensus 191 ~~~~li~D 198 (387)
T PRK07777 191 HDLLVITD 198 (387)
T ss_pred cCcEEEEe
Confidence 99876664
No 449
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.02 E-value=8.9 Score=38.73 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=39.5
Q ss_pred ccccCHHHHHHHHHcCCcchHHHHhcCCH-H---------HHHHHHHHHHHcCCcEEEEe
Q 018446 246 EFIVDAWQIYYARTKGADAVLLIAAVLPD-L---------DIRYMTKICKLLGLTALVEV 295 (355)
Q Consensus 246 DFIIdpyQI~eAr~~GADAVLLIaaiL~~-~---------~L~~L~~~A~~LGLeaLVEV 295 (355)
+.-+..+=+.+++.+|||||-+.+-+=++ . .|..+.+.|+..||--|+|+
T Consensus 104 ~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 104 PDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred ccccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 34455555788999999999887776665 2 37788899999999999993
No 450
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=53.93 E-value=55 Score=31.29 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=72.1
Q ss_pred CccHHHHHHhhhhcCCCceEEeEeee-----cCCCCCCCCCCCCHHHHHHHHHHcCceEE---EEeccCCCCCCCHHHHH
Q 018446 160 ARDFIGALMAANQRTGLPALIAEVKK-----ASPSRGILREDFDPVEIARSYEKGGAACL---SILTDEKYFKGSFENLE 231 (355)
Q Consensus 160 ~rdF~~aL~~~~~~~g~~aVIAEvKR-----aSPSkG~I~~~~Dp~~iA~~Ye~~GAaaI---SVLTD~~fF~GS~edL~ 231 (355)
..+|...+.+.. .++..+=.++|+ .--.+|+.....++.++++.|++.|+..| +|-.|-..=+=+++.++
T Consensus 109 ~p~~~~~~~~~~--g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~ 186 (243)
T TIGR01919 109 NPWWAAAVIRYG--GDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLE 186 (243)
T ss_pred CHHHHHHHHHHc--cccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHH
Confidence 335666554432 234445556662 22234665567899999999999998765 44456555455678889
Q ss_pred HHHhcCCCCCeeccccccCHHHHHHHH---HcCCcchHHHHhcCCH
Q 018446 232 AVRSAGVKCPLLCKEFIVDAWQIYYAR---TKGADAVLLIAAVLPD 274 (355)
Q Consensus 232 ~VR~a~v~lPVLrKDFIIdpyQI~eAr---~~GADAVLLIaaiL~~ 274 (355)
.+++. +++||+.-==+=+.--+.+.+ ..|+|++++=-++.+.
T Consensus 187 ~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 187 VVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred HHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 99986 889998655444444444433 5699998876666543
No 451
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=53.92 E-value=19 Score=33.97 Aligned_cols=74 Identities=23% Similarity=0.128 Sum_probs=49.6
Q ss_pred HHHHHHHHcCceEEEEe----c-cCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 201 EIARSYEKGGAACLSIL----T-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVL----T-D~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
+=+..-.+.|+++||-- | +...-+=+|+.++.+++. ++||++-.=|-+|-|..+|..+||++|..=-+|--++
T Consensus 103 ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 103 EEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp HHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred HHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 34555567899999842 1 111222346777777763 8999999999999999999999999999888877665
Q ss_pred H
Q 018446 276 D 276 (355)
Q Consensus 276 ~ 276 (355)
.
T Consensus 181 ~ 181 (192)
T PF04131_consen 181 E 181 (192)
T ss_dssp H
T ss_pred H
Confidence 4
No 452
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=53.78 E-value=32 Score=32.21 Aligned_cols=76 Identities=24% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccC--CCCCCCHHHHHHHHhc--CCCCC--eeccccccCHHHHHHHHHcCCcchHHHH
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDE--KYFKGSFENLEAVRSA--GVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~--~fF~GS~edL~~VR~a--~v~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIa 269 (355)
-|++. +|....++||..||....+ .+.....+.+..+++. ..++| ||.-= +-++.||.+|..+|||.|.+-.
T Consensus 109 V~s~~-Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As-~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 109 IFSAA-QALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAAS-IRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred ecCHH-HHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecc-cCCHHHHHHHHHcCCCEEEeCH
Confidence 35554 6777788999999988776 4444555655555432 12333 22222 3489999999999999998877
Q ss_pred hcCC
Q 018446 270 AVLP 273 (355)
Q Consensus 270 aiL~ 273 (355)
.+|.
T Consensus 187 ~vl~ 190 (211)
T cd00956 187 DVLE 190 (211)
T ss_pred HHHH
Confidence 7663
No 453
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=53.71 E-value=42 Score=31.43 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=82.4
Q ss_pred eEEeEeeecCCCCCCCCCCCCHHHHHHHHHHc-CceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH
Q 018446 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG-GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256 (355)
Q Consensus 178 aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~-GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e 256 (355)
.|.+|+.-. +.-+-.+.|+.+.+. |--+|=|=... ..++-++.+++. .+++.. =.+.+.-|.+.
T Consensus 53 ~v~~qv~~~--------~~e~~i~~a~~l~~~~~~~~iKIP~T~----~gl~ai~~L~~~--gi~v~~-T~V~s~~Qa~~ 117 (211)
T cd00956 53 PVSAQVVST--------DAEGMVAEARKLASLGGNVVVKIPVTE----DGLKAIKKLSEE--GIKTNV-TAIFSAAQALL 117 (211)
T ss_pred CEEEEEEeC--------CHHHHHHHHHHHHHhCCCEEEEEcCcH----hHHHHHHHHHHc--CCceee-EEecCHHHHHH
Confidence 488888311 112344566666655 54444443332 456666666654 345433 24889999999
Q ss_pred HHHcCCcchHHHHhcC------CHHHHHHHHHHHHHcCCc---EEEEeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLT---ALVEVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL------~~~~L~~L~~~A~~LGLe---aLVEVH~~eELerAl~l~ga~iIGINNR 318 (355)
|..+||+-|=-.+.-+ +-+.++++.++++..|+. -.--+.|..|+-.++.+ |++++=|.-.
T Consensus 118 Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~-Gad~vTv~~~ 187 (211)
T cd00956 118 AAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALA-GADAITLPPD 187 (211)
T ss_pred HHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHc-CCCEEEeCHH
Confidence 9999998743333322 124677899999999998 66688999999999886 9988766533
No 454
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=53.57 E-value=67 Score=28.60 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHcCceEEEE---ec---cCCC-CCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSI---LT---DEKY-FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISV---LT---D~~f-F~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaa 270 (355)
++.+..+++ +.||+.+.+ .+ .+.. -..+++.++.+++...++||+.=- .|++-.+.+++..|||+|-++-+
T Consensus 105 ~~~e~~~a~-~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~G-GI~~~~~~~~~~~G~~gva~~~~ 182 (196)
T TIGR00693 105 NLEELAEAE-AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIG-GITLENAAEVLAAGADGVAVVSA 182 (196)
T ss_pred CHHHHHHHh-HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEEC-CcCHHHHHHHHHcCCCEEEEhHH
Confidence 556665544 469999874 22 2232 123689999988642358988875 46899999999999999999999
Q ss_pred cCCHHHHHH
Q 018446 271 VLPDLDIRY 279 (355)
Q Consensus 271 iL~~~~L~~ 279 (355)
+...++...
T Consensus 183 i~~~~dp~~ 191 (196)
T TIGR00693 183 IMQAADPKA 191 (196)
T ss_pred hhCCCCHHH
Confidence 987655433
No 455
>PRK10060 RNase II stability modulator; Provisional
Probab=53.43 E-value=48 Score=35.66 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEE
Q 018446 275 LDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 275 ~~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iI 313 (355)
.-++.++.+|+++|+.++.| |.|+++++.+..+ |++.+
T Consensus 598 ~~v~~ii~~a~~lg~~viAeGVEt~~q~~~l~~~-G~d~~ 636 (663)
T PRK10060 598 SLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKN-GVNER 636 (663)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCCHHHHHHHHHc-CCCEE
Confidence 34678899999999999998 9999999998886 77644
No 456
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=53.31 E-value=36 Score=33.00 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=84.6
Q ss_pred CCccHHHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceE------EEEeccCCC--CCCCH-HH
Q 018446 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC------LSILTDEKY--FKGSF-EN 229 (355)
Q Consensus 159 p~rdF~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaa------ISVLTD~~f--F~GS~-ed 229 (355)
.++.|..++++ ....|+.=.|..|.- | +.+.-..+ -||+.- =+||--.+| |-|+. .-
T Consensus 105 ~t~~~v~~a~~------~~~~i~~TRKt~Pg~---r----~~~k~Av~-~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~ 170 (269)
T cd01568 105 ATRRYVEAARG------TKARIADTRKTTPGL---R----LLEKYAVR-AGGGDNHRLGLSDAVLIKDNHIAAAGGITEA 170 (269)
T ss_pred HHHHHHHHhCC------CCEEEeecCCCChhh---H----HHHHHHHH-hCCCccccCCCcceeeecHhHHHHhCCHHHH
Confidence 45667777653 236788777777752 2 12111122 344322 145544444 33554 45
Q ss_pred HHHHHhcCC-CCC--eeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHH
Q 018446 230 LEAVRSAGV-KCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR 303 (355)
Q Consensus 230 L~~VR~a~v-~lP--VLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVEVH---~~eELer 303 (355)
+..+|+... ..+ |=+. +.-|..+|..+|||.|+| .-++++++++++++.+.. ....+|+- |.+.+..
T Consensus 171 v~~~r~~~~~~~~I~vev~----t~eea~~A~~~gaD~I~l--d~~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~ 243 (269)
T cd01568 171 VKRARAAAPFEKKIEVEVE----TLEEAEEALEAGADIIML--DNMSPEELKEAVKLLKGL-PRVLLEASGGITLENIRA 243 (269)
T ss_pred HHHHHHhCCCCCeEEEecC----CHHHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHH
Confidence 677887421 122 2222 578999999999999988 335667888888877665 56678876 5888888
Q ss_pred HhccCCCeEEEe
Q 018446 304 VLGIEGIELIGI 315 (355)
Q Consensus 304 Al~l~ga~iIGI 315 (355)
.... |++.|.+
T Consensus 244 ~a~~-Gad~Isv 254 (269)
T cd01568 244 YAET-GVDVIST 254 (269)
T ss_pred HHHc-CCCEEEE
Confidence 8886 9999987
No 457
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=53.23 E-value=11 Score=38.49 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=53.6
Q ss_pred EeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCC--------CC-----HHHHHHHHhcCCCCCeeccccc
Q 018446 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK--------GS-----FENLEAVRSAGVKCPLLCKEFI 248 (355)
Q Consensus 182 EvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~--------GS-----~edL~~VR~a~v~lPVLrKDFI 248 (355)
++|+.-|..-+|-.+.--.+.|+.+.++||++|=|=.-|-.-. |- .-+..++++. ..+||+..==|
T Consensus 142 ~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~-~~v~iIADGGi 220 (352)
T PF00478_consen 142 KIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARD-YGVPIIADGGI 220 (352)
T ss_dssp HHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHC-TTSEEEEESS-
T ss_pred HHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhh-ccCceeecCCc
Confidence 4444445333333332334788999999999998754432111 11 2344444542 57999999999
Q ss_pred cCHHHHHHHHHcCCcchHH
Q 018446 249 VDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 249 IdpyQI~eAr~~GADAVLL 267 (355)
-.+-.|..|.++|||+|.|
T Consensus 221 ~~sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 221 RTSGDIVKALAAGADAVML 239 (352)
T ss_dssp SSHHHHHHHHHTT-SEEEE
T ss_pred Ccccceeeeeeecccceee
Confidence 9999999999999999975
No 458
>PRK08185 hypothetical protein; Provisional
Probab=53.03 E-value=52 Score=32.56 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=58.6
Q ss_pred CceEEeEeeecCCCC-CCC---CC--CCCHHHHHHHHHHcCceEEEE---------ec--cCCCCCCCHHHHHHHHhcCC
Q 018446 176 LPALIAEVKKASPSR-GIL---RE--DFDPVEIARSYEKGGAACLSI---------LT--DEKYFKGSFENLEAVRSAGV 238 (355)
Q Consensus 176 ~~aVIAEvKRaSPSk-G~I---~~--~~Dp~~iA~~Ye~~GAaaISV---------LT--D~~fF~GS~edL~~VR~a~v 238 (355)
...|=+|+-.-+-.. +.. .. ..||.+..+.+++-|+++|.| -| .++. +++-|+.++++ +
T Consensus 122 gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L---~~e~l~~I~~~-~ 197 (283)
T PRK08185 122 GVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPEL---QMDLLKEINER-V 197 (283)
T ss_pred CCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCc---CHHHHHHHHHh-h
Confidence 356778885532110 111 11 348988777777779999988 33 2222 49999999986 8
Q ss_pred CCCeecc-ccccCHHHHHHHHHcCCcchHH
Q 018446 239 KCPLLCK-EFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 239 ~lPVLrK-DFIIdpyQI~eAr~~GADAVLL 267 (355)
++|+..- =-.++.-|+-+|..+|.--|-.
T Consensus 198 ~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 198 DIPLVLHGGSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence 9996544 3448888999999998766644
No 459
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=53.02 E-value=22 Score=33.09 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=75.5
Q ss_pred CceEEeEeeecCCCCCCCCCCCCH-----HHHHHHHHHcCceEEEEeccCCCCCC-C----HHHHHHHHhc--CCCCCee
Q 018446 176 LPALIAEVKKASPSRGILREDFDP-----VEIARSYEKGGAACLSILTDEKYFKG-S----FENLEAVRSA--GVKCPLL 243 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp-----~~iA~~Ye~~GAaaISVLTD~~fF~G-S----~edL~~VR~a--~v~lPVL 243 (355)
++++|.-+ |+.+...+ .. ..-++.+.+.||++|.++-.-.+.+. . .+++..+++. ...+|++
T Consensus 56 ~~~~vi~f----p~g~~~~~--~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vI 129 (236)
T PF01791_consen 56 KVGLVIGF----PFGTSTTE--PKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVI 129 (236)
T ss_dssp EEEEEEST----TTSSSTHH--HHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred ccceEEEe----CCCCCccc--cccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEE
Confidence 46677655 65433221 11 35566777889999999986533222 2 3445555442 2356766
Q ss_pred ccccccCHHH---------HHH----HHHcCCcchHHHHh---cCCHHHHHHHHHHHHHcCCc----EEEE--e------
Q 018446 244 CKEFIVDAWQ---------IYY----ARTKGADAVLLIAA---VLPDLDIRYMTKICKLLGLT----ALVE--V------ 295 (355)
Q Consensus 244 rKDFIIdpyQ---------I~e----Ar~~GADAVLLIaa---iL~~~~L~~L~~~A~~LGLe----aLVE--V------ 295 (355)
-- .-..+.+ |.. |..+|||-|=.-.. --+.++.+.|.+.......- +++- +
T Consensus 130 lE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~ 208 (236)
T PF01791_consen 130 LE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFL 208 (236)
T ss_dssp EE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHH
T ss_pred EE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHH
Confidence 55 4455555 433 45678887655333 12235667777777765433 5554 6
Q ss_pred CCHHHHHHHhccCCCeEEEe
Q 018446 296 HDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 296 H~~eELerAl~l~ga~iIGI 315 (355)
++.++....+++ ||+.+|+
T Consensus 209 ~~l~~a~~~i~a-Ga~~~G~ 227 (236)
T PF01791_consen 209 RTLEDALEFIEA-GADRIGT 227 (236)
T ss_dssp HSHHHHHHHHHT-THSEEEE
T ss_pred HHHHHHHHHHHc-CChhHHH
Confidence 667777777776 8888886
No 460
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=52.98 E-value=84 Score=30.23 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCCCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhc-CCCCCe
Q 018446 164 IGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCPL 242 (355)
Q Consensus 164 ~~aL~~~~~~~g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a-~v~lPV 242 (355)
.+++.+.. ..+.||+.+ |+ |.-....+...-++.|.++||++|- +-|..+.+..++.. ...+||
T Consensus 64 ~~~I~r~~---~~~pviaD~----~~-G~g~~~~~~~~~~~~l~~aGa~gv~-------iED~~~~~~~i~ai~~a~i~V 128 (240)
T cd06556 64 VRAVRRGA---PLALIVADL----PF-GAYGAPTAAFELAKTFMRAGAAGVK-------IEGGEWHIETLQMLTAAAVPV 128 (240)
T ss_pred HHHHHhhC---CCCCEEEeC----CC-CCCcCHHHHHHHHHHHHHcCCcEEE-------EcCcHHHHHHHHHHHHcCCeE
Q ss_pred ecc-c--------------cccCHHHHHHHH-------HcCCcchHHHHhcCCHHHHHHHHH
Q 018446 243 LCK-E--------------FIVDAWQIYYAR-------TKGADAVLLIAAVLPDLDIRYMTK 282 (355)
Q Consensus 243 LrK-D--------------FIIdpyQI~eAr-------~~GADAVLLIaaiL~~~~L~~L~~ 282 (355)
+.. | |.-+.-.+.++. .+|||+|++- .+ +.++.+.+.+
T Consensus 129 iaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e-~~-~~e~~~~i~~ 188 (240)
T cd06556 129 IAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME-CV-PVELAKQITE 188 (240)
T ss_pred EEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc-CC-CHHHHHHHHH
No 461
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=52.57 E-value=1e+02 Score=31.20 Aligned_cols=133 Identities=16% Similarity=0.071 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCH---
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD--- 274 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~--- 274 (355)
+-.++++.+.+.|...|=|= -|..=...++.++.+++.+.+.-++.- --....-|..|..+|+|.|-+...+=+.
T Consensus 27 ~k~~ia~~L~~~GV~~IE~G-~p~~~~~~~e~i~~i~~~~~~~~i~~~-~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~ 104 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEAG-FPAVSEDEKEAIKAIAKLGLNASILAL-NRAVKSDIDASIDCGVDAVHIFIATSDIHIK 104 (378)
T ss_pred HHHHHHHHHHHhCCCEEEEe-CCCcChHHHHHHHHHHhcCCCeEEEEE-cccCHHHHHHHHhCCcCEEEEEEcCCHHHHH
Confidence 44588899999999888762 111111223455555543222112111 0012556888999999986665544321
Q ss_pred -----------HHHHHHHHHHHHcCCcEEEEe-----CCHHHHHHH----hccCCCeEEEeeCCCCCccccChhhHHhhh
Q 018446 275 -----------LDIRYMTKICKLLGLTALVEV-----HDEREMDRV----LGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (355)
Q Consensus 275 -----------~~L~~L~~~A~~LGLeaLVEV-----H~~eELerA----l~l~ga~iIGINNRdL~TfevDl~~t~~L~ 334 (355)
+.+.+.+++|++.|+++-+-. ++.+.+.+. .++ |++.|.+-.-. =-..+..+.++.
T Consensus 105 ~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~-Ga~~I~l~DT~---G~~~P~~v~~lv 180 (378)
T PRK11858 105 HKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA-GADRVRFCDTV---GILDPFTMYELV 180 (378)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC-CCCEEEEeccC---CCCCHHHHHHHH
Confidence 467778999999999977653 455555443 343 77777765322 123455555555
Q ss_pred cc
Q 018446 335 EG 336 (355)
Q Consensus 335 ~~ 336 (355)
..
T Consensus 181 ~~ 182 (378)
T PRK11858 181 KE 182 (378)
T ss_pred HH
Confidence 44
No 462
>PLN02417 dihydrodipicolinate synthase
Probab=52.29 E-value=33 Score=33.10 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=37.4
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSA 236 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a 236 (355)
++..||+=+-..|. .+..++|+.+++.||+++.|.+ |.||.-+. ++++.|.++
T Consensus 69 ~~~pvi~gv~~~~t--------~~~i~~a~~a~~~Gadav~~~~-P~y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 69 GKIKVIGNTGSNST--------REAIHATEQGFAVGMHAALHIN-PYYGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred CCCcEEEECCCccH--------HHHHHHHHHHHHcCCCEEEEcC-CccCCCCHHHHHHHHHHHHhh
Confidence 45678877743322 3678999999999999999866 67887664 445556554
No 463
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=52.10 E-value=25 Score=33.01 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=61.7
Q ss_pred EEeEeeecCC-CCCCCCCCCCHHHHHHHHHHcCceEE---EEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 179 LIAEVKKASP-SRGILREDFDPVEIARSYEKGGAACL---SILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 179 VIAEvKRaSP-SkG~I~~~~Dp~~iA~~Ye~~GAaaI---SVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
+=.++|..-+ ..|+.. ++.++...|...|+ .+ +|-+|..--+=+++.++.+++. +++||+.-==|=++-++
T Consensus 125 vslD~~~g~v~~~g~~~---~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~d~eli~~i~~~-~~~pvia~GGi~s~ed~ 199 (221)
T TIGR00734 125 VSLDFKEKFLDASGLFE---SLEEVRDFLNSFDY-GLIVLDIHSVGTMKGPNLELLTKTLEL-SEHPVMLGGGISGVEDL 199 (221)
T ss_pred EEEEeECCccccccccc---cHHHHHHHHHhcCC-EEEEEECCccccCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHH
Confidence 4455554322 235432 67778888877776 43 3334444444578999999986 89999988888888899
Q ss_pred HHHHHcCCcchHHHHhcC
Q 018446 255 YYARTKGADAVLLIAAVL 272 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL 272 (355)
.+....|||+|++=-++.
T Consensus 200 ~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 200 ELLKEMGVSAVLVATAVH 217 (221)
T ss_pred HHHHHCCCCEEEEhHHhh
Confidence 999989999988755543
No 464
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=51.93 E-value=1.7e+02 Score=28.25 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCC-CCCee------cccccc-CHHHHHHHHHcCCcchHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLL------CKEFIV-DAWQIYYARTKGADAVLLIA 269 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v-~lPVL------rKDFII-dpyQI~eAr~~GADAVLLIa 269 (355)
+-.++++...+.|...|=| +-+..-....++++.+++... +..++ ..|+.. +..-+..|...|.|.|-+..
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~ 99 (273)
T cd07941 21 DKLRIARKLDELGVDYIEG-GWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFG 99 (273)
T ss_pred HHHHHHHHHHHcCCCEEEe-cCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEE
Confidence 3457888888999888876 111001112333444444221 22222 233332 23456678899999765532
Q ss_pred h--------cCC------HHHHHHHHHHHHHcCCcEEE--E------eCCHHHHHH----HhccCCCeEEEeeCCCCCcc
Q 018446 270 A--------VLP------DLDIRYMTKICKLLGLTALV--E------VHDEREMDR----VLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 270 a--------iL~------~~~L~~L~~~A~~LGLeaLV--E------VH~~eELer----Al~l~ga~iIGINNRdL~Tf 323 (355)
. .+. -+.+.+++++|++.|+++-+ | -|+.+.+.. +.++ |++.|.|-. |.
T Consensus 100 ~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~-g~~~i~l~D----T~ 174 (273)
T cd07941 100 KSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEA-GADWLVLCD----TN 174 (273)
T ss_pred cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhC-CCCEEEEec----CC
Confidence 2 221 12567888999999998766 2 355655432 2443 676665532 22
Q ss_pred c-cChhhHHhhhccc
Q 018446 324 E-VDNSNTKKLLEGE 337 (355)
Q Consensus 324 e-vDl~~t~~L~~~~ 337 (355)
- ..+....+|.+.+
T Consensus 175 G~~~P~~v~~lv~~l 189 (273)
T cd07941 175 GGTLPHEIAEIVKEV 189 (273)
T ss_pred CCCCHHHHHHHHHHH
Confidence 2 3355555555543
No 465
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=51.54 E-value=2.2e+02 Score=29.06 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCcchHHHHhcCC----------------HHHHHHHHHHHHHc--CCcEEEEeC
Q 018446 252 WQIYYARTKGADAVLLIAAVLP----------------DLDIRYMTKICKLL--GLTALVEVH 296 (355)
Q Consensus 252 yQI~eAr~~GADAVLLIaaiL~----------------~~~L~~L~~~A~~L--GLeaLVEVH 296 (355)
.-|..|+.+||..|.+.....+ .+-|..+.++|.+. |+...+|-.
T Consensus 119 raId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 119 RNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 3567899999998887765432 12456677888886 588999865
No 466
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=51.52 E-value=35 Score=31.94 Aligned_cols=84 Identities=8% Similarity=-0.035 Sum_probs=53.1
Q ss_pred HHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccC----HHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD----AWQIYYARTKGADAVLLIAAVLPDLDIR 278 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIId----pyQI~eAr~~GADAVLLIaaiL~~~~L~ 278 (355)
+......|..-++++.|..++...++.+....+. ....|....+.-+ .=|+.+.+..++|+|++.. ...+..
T Consensus 119 ~~~~~~~~w~~vaii~~~~~~~~~l~~~~~~~~~-~g~~v~~~~~~~~~~d~~~~l~~i~~~~~d~Vi~~~---~~~~~~ 194 (324)
T cd06368 119 LDLIKYFGWRKFVYIYDSDEGLLRLQELLDALSP-KGIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDC---SPERLK 194 (324)
T ss_pred HHHHHhcCCCEEEEEECCcHhHHHHHHHHHhhcc-CCceEEEEEecCCchHHHHHHHHHhhccCceEEEEC---CHHHHH
Confidence 3333456888899999877654444444333221 1233443333222 2467788999999987644 456888
Q ss_pred HHHHHHHHcCCc
Q 018446 279 YMTKICKLLGLT 290 (355)
Q Consensus 279 ~L~~~A~~LGLe 290 (355)
.+++.++++||.
T Consensus 195 ~i~~qa~~~g~~ 206 (324)
T cd06368 195 EFLEQAVEVGMM 206 (324)
T ss_pred HHHHHHHHhccc
Confidence 999999999996
No 467
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=51.42 E-value=45 Score=32.74 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=70.8
Q ss_pred HHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHHhcC-CHHHHHH
Q 018446 202 IARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVL-PDLDIRY 279 (355)
Q Consensus 202 iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIaaiL-~~~~L~~ 279 (355)
.++..+..| +. .-|+.....+++.+..+|+. +.+||.--+-+.+.+++..+...| +|.+.+=+.-+ +-.....
T Consensus 191 ~~~~l~~~~---~~-~iEeP~~~~~~~~~~~l~~~-~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 191 RLKELDRYQ---LL-YIEEPFKIDDLSMLDELAKG-TITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred HHHHHhhCC---Cc-EEECCCChhHHHHHHHHHhh-cCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 445555544 22 23555667889999999985 899999999999999999988876 45555433322 3457788
Q ss_pred HHHHHHHcCCcEEEEeCCHHHHHH
Q 018446 280 MTKICKLLGLTALVEVHDEREMDR 303 (355)
Q Consensus 280 L~~~A~~LGLeaLVEVH~~eELer 303 (355)
+..+|+..|+.+.+-.|.+-.+-.
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~i~~ 289 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETGISR 289 (324)
T ss_pred HHHHHHHcCCeEEEcceEcccHHH
Confidence 999999999999987665555554
No 468
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=51.39 E-value=1.1e+02 Score=30.03 Aligned_cols=86 Identities=27% Similarity=0.230 Sum_probs=56.7
Q ss_pred CceEEeEeeecCCCCCCCCCCCCHHHHHHHH-HHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHH
Q 018446 176 LPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (355)
Q Consensus 176 ~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Y-e~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI 254 (355)
...|.+.|+...-+. +. ..+..+.++.- +.++|++|-|--...--.=++++|..+|+. +++|||.- =.+.+--|
T Consensus 140 ~v~ilaDV~~kh~~~--l~-~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~-~~~PVlvG-SGvt~~Ni 214 (254)
T PF03437_consen 140 DVKILADVHVKHSSP--LA-TRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREA-VPVPVLVG-SGVTPENI 214 (254)
T ss_pred CeEEEeeechhhccc--CC-CCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhc-CCCCEEEe-cCCCHHHH
Confidence 378999997764332 22 34677777665 788999987754443344589999999996 77999853 34566666
Q ss_pred HHHHHcCCcchHH
Q 018446 255 YYARTKGADAVLL 267 (355)
Q Consensus 255 ~eAr~~GADAVLL 267 (355)
.+-... ||++..
T Consensus 215 ~~~l~~-ADG~IV 226 (254)
T PF03437_consen 215 AEYLSY-ADGAIV 226 (254)
T ss_pred HHHHHh-CCEEEE
Confidence 554322 666543
No 469
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=51.28 E-value=1.8e+02 Score=29.63 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCceEEEEec--cCCC---CCCCHHHHHHHHhc-CCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc-
Q 018446 199 PVEIARSYEKGGAACLSILT--DEKY---FKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV- 271 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLT--D~~f---F~GS~edL~~VR~a-~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai- 271 (355)
-.+||+...+.|..-|=|-. -+++ +....+.+..+++. .+.++.|+- ..-.|..|..+|+|.|-+.+.+
T Consensus 70 Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~----n~~die~A~~~g~~~v~i~~s~S 145 (347)
T PLN02746 70 KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTP----NLKGFEAAIAAGAKEVAVFASAS 145 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcC----CHHHHHHHHHcCcCEEEEEEecC
Confidence 35899999999988885531 2211 11223556677652 245566653 7788899999999998776443
Q ss_pred -------C--CH----HHHHHHHHHHHHcCCcEEEEe-----------CCHHH----HHHHhccCCCeEEEeeCCCCCcc
Q 018446 272 -------L--PD----LDIRYMTKICKLLGLTALVEV-----------HDERE----MDRVLGIEGIELIGINNRNLETF 323 (355)
Q Consensus 272 -------L--~~----~~L~~L~~~A~~LGLeaLVEV-----------H~~eE----LerAl~l~ga~iIGINNRdL~Tf 323 (355)
+ +. +.+.+++++|++.|+++-+-+ .+.+. ++++.++ |++.|.|-.- +=
T Consensus 146 d~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~-Gad~I~l~DT---~G 221 (347)
T PLN02746 146 ESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM-GCYEISLGDT---IG 221 (347)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc-CCCEEEecCC---cC
Confidence 1 22 234478999999999885333 13333 2345554 7877766431 11
Q ss_pred ccChhhHHhhhcccc
Q 018446 324 EVDNSNTKKLLEGER 338 (355)
Q Consensus 324 evDl~~t~~L~~~~~ 338 (355)
-.++....+|...++
T Consensus 222 ~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 222 VGTPGTVVPMLEAVM 236 (347)
T ss_pred CcCHHHHHHHHHHHH
Confidence 123556666655443
No 470
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=51.19 E-value=32 Score=34.12 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCH-HHHHHHHHcCCcchHHHHhc
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDA-WQIYYARTKGADAVLLIAAV 271 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdp-yQI~eAr~~GADAVLLIaai 271 (355)
+..+=|++|.++||+||-|-.- =+.++++.+.++ ++.|++. ..+.-.| ..+.+-..+|..-|..-...
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~~~-----~~~~~i~~~~~~-~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~ 237 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPEAM-----TELEMYRRFADA-VKVPILANITEFGATPLFTTEELASAGVAMVLYPLSA 237 (292)
T ss_pred HHHHHHHHHHHcCCCEEEecCC-----CCHHHHHHHHHh-cCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHH
Confidence 4567789999999999988542 268999999885 7899843 3333222 35777778899888654443
No 471
>PTZ00081 enolase; Provisional
Probab=50.85 E-value=96 Score=32.51 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHc--CceEEEEeccCCCCCCCHHHHHHHHhcCC--CCCeecccc-ccCHHHHHHHHHcCC-cchHHHH
Q 018446 196 DFDPVEIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEF-IVDAWQIYYARTKGA-DAVLLIA 269 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~--GAaaISVLTD~~fF~GS~edL~~VR~a~v--~lPVLrKDF-IIdpyQI~eAr~~GA-DAVLLIa 269 (355)
.+++.+++.-|.+. ... |- .-|..+...+++.+..+++. . .+||..-|. .-.+.++..+...|| |+|++=+
T Consensus 280 ~~s~~eli~~~~~~l~~y~-I~-~IEDPl~~~D~eg~~~Lt~~-lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKv 356 (439)
T PTZ00081 280 KLTGEELVELYLDLVKKYP-IV-SIEDPFDQDDWEAYAKLTAA-IGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKV 356 (439)
T ss_pred ccCHHHHHHHHHHHHhcCC-cE-EEEcCCCcccHHHHHHHHHh-hCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEecc
Confidence 36888888866432 112 32 33456778999999999985 6 899999995 556999888877654 6666644
Q ss_pred hcCC-HHHHHHHHHHHHHcCCcEEEEeCC-HHHHHHHhccCCCeEEEeeCCCCCccccC
Q 018446 270 AVLP-DLDIRYMTKICKLLGLTALVEVHD-EREMDRVLGIEGIELIGINNRNLETFEVD 326 (355)
Q Consensus 270 aiL~-~~~L~~L~~~A~~LGLeaLVEVH~-~eELerAl~l~ga~iIGINNRdL~TfevD 326 (355)
.-.+ -.+..+.+++|+..|+.+.+--.+ +.|-.-..++ .+|.|.+-++|=..-
T Consensus 357 nqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadL----AVa~~~~~iK~G~~~ 411 (439)
T PTZ00081 357 NQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADL----VVGLGTGQIKTGAPC 411 (439)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHH----HHHcCCCceecCCCc
Confidence 4333 457778899999999999995444 2232222233 256667777775543
No 472
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=50.63 E-value=23 Score=34.32 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=55.1
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCCCCCee-ccccccCHHHHHHHHHcCCcchHHHH------hcCCHHHHHHHHHHHHHc
Q 018446 215 SILTDEKYFKGSFENLEAVRSAGVKCPLL-CKEFIVDAWQIYYARTKGADAVLLIA------AVLPDLDIRYMTKICKLL 287 (355)
Q Consensus 215 SVLTD~~fF~GS~edL~~VR~a~v~lPVL-rKDFIIdpyQI~eAr~~GADAVLLIa------aiL~~~~L~~L~~~A~~L 287 (355)
.|+++...|.+....+.......+.+|+- ..+|-+|+-++.++..-+..+|++.- .+++.++++.+.+.|++.
T Consensus 89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~ 168 (350)
T TIGR03537 89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREH 168 (350)
T ss_pred eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHc
Confidence 68888888877776665443211344543 24688999999888766776665442 237888899999999999
Q ss_pred CCcEEE
Q 018446 288 GLTALV 293 (355)
Q Consensus 288 GLeaLV 293 (355)
|+-.++
T Consensus 169 ~~~ii~ 174 (350)
T TIGR03537 169 GIILCS 174 (350)
T ss_pred CcEEEE
Confidence 986665
No 473
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=50.58 E-value=66 Score=31.48 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=71.5
Q ss_pred HHHHHHcCceEEEEeccCCCCCC---CHHHHHHHHhcCCCCCeec------cccccCHHH-------HHHHHHcCCcchH
Q 018446 203 ARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLC------KEFIVDAWQ-------IYYARTKGADAVL 266 (355)
Q Consensus 203 A~~Ye~~GAaaISVLTD~~fF~G---S~edL~~VR~a~v~lPVLr------KDFIIdpyQ-------I~eAr~~GADAVL 266 (355)
|..-+++||+=|=.+..- .-+| |+..++.++++ +++||-. .||..++.. |..++.+|||+|.
T Consensus 14 a~~A~~~GAdRiELc~~L-~~GGlTPS~g~i~~~~~~-~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV 91 (248)
T PRK11572 14 ALTAQQAGADRIELCAAP-KEGGLTPSLGVLKSVRER-VTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLV 91 (248)
T ss_pred HHHHHHcCCCEEEEccCc-CCCCcCCCHHHHHHHHHh-cCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 344456799998877653 3444 68999999986 7898653 499999875 5678999999987
Q ss_pred HH----HhcCCHHHHHHHHHHHHHcCCcEEE-----EeCCHHH-HHHHhccCCCe
Q 018446 267 LI----AAVLPDLDIRYMTKICKLLGLTALV-----EVHDERE-MDRVLGIEGIE 311 (355)
Q Consensus 267 LI----aaiL~~~~L~~L~~~A~~LGLeaLV-----EVH~~eE-LerAl~l~ga~ 311 (355)
+= -.-++.+.++.|++.|. ||.+-+ ++.|..+ ++..+++ |++
T Consensus 92 ~G~L~~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~l-G~~ 143 (248)
T PRK11572 92 TGVLDVDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADL-GVA 143 (248)
T ss_pred EeeECCCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHc-CCC
Confidence 62 22466678999999996 444322 3345444 5555565 654
No 474
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=50.55 E-value=15 Score=32.62 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCceEEEEec-cCCC----C-CCCHHHHHHHHhcCC-----CCCeeccccccCHHHHHHHHHcCCcchHHH
Q 018446 200 VEIARSYEKGGAACLSILT-DEKY----F-KGSFENLEAVRSAGV-----KCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLT-D~~f----F-~GS~edL~~VR~a~v-----~lPVLrKDFIIdpyQI~eAr~~GADAVLLI 268 (355)
.+.++.|... ++.+.+.+ ++.. | ...++.+..+|+. + ++|+ .=+++|.+-++.++...|||.|...
T Consensus 118 ~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~-~~~~~~~~pi-~v~GGI~~env~~~~~~gad~iivg 194 (211)
T cd00429 118 VEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLREL-IPENNLNLLI-EVDGGINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred HHHHHHHHhh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHH-HHhcCCCeEE-EEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4667777654 67765543 1110 1 1123566666654 3 3775 5688999999999999999999999
Q ss_pred HhcCCHHHHH
Q 018446 269 AAVLPDLDIR 278 (355)
Q Consensus 269 aaiL~~~~L~ 278 (355)
-++...++..
T Consensus 195 sai~~~~~~~ 204 (211)
T cd00429 195 SALFGSDDYA 204 (211)
T ss_pred HHHhCCCCHH
Confidence 8888655543
No 475
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.41 E-value=55 Score=32.18 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=64.5
Q ss_pred EEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCC-cchHHHHhcC-CHHHHHHHHHHHHHcCCcE
Q 018446 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGA-DAVLLIAAVL-PDLDIRYMTKICKLLGLTA 291 (355)
Q Consensus 214 ISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GA-DAVLLIaaiL-~~~~L~~L~~~A~~LGLea 291 (355)
|..+ |+.+...+++.+..+|+. ..+||.--+-+.+..++......|| |.|.+=+.-+ +-.....+..+|+..|+..
T Consensus 205 i~~i-EeP~~~~d~~~~~~l~~~-~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~ 282 (354)
T cd03317 205 LLMI-EQPLAADDLIDHAELQKL-LKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPV 282 (354)
T ss_pred ccEE-ECCCChhHHHHHHHHHhh-cCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcE
Confidence 4333 445667788899999985 8999999999999999999988876 7766533333 3567788999999999998
Q ss_pred EEEeCCHHHH
Q 018446 292 LVEVHDEREM 301 (355)
Q Consensus 292 LVEVH~~eEL 301 (355)
.+-.+.+-.+
T Consensus 283 ~~g~~~es~l 292 (354)
T cd03317 283 WCGGMLESGI 292 (354)
T ss_pred EecCcccchH
Confidence 7754443333
No 476
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=50.25 E-value=16 Score=32.68 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCC------CHHHHHHHHhcCCC-----CCeeccccccCHHHHHHHHHcCCcchHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSAGVK-----CPLLCKEFIVDAWQIYYARTKGADAVLL 267 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~G------S~edL~~VR~a~v~-----lPVLrKDFIIdpyQI~eAr~~GADAVLL 267 (355)
+.+..+.|.. |++.+-+.+-..-+.| .++.+..+|+. ++ +|+ .=++.|.+-.+.+....|||.|.+
T Consensus 116 ~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~-~~~~~~~~~i-~v~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 116 PLEFLEYVLP-DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKM-IDENGLSILI-EVDGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred CHHHHHHHHh-hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHH-HHhcCCCceE-EEECCcCHHHHHHHHHcCCCEEEE
Confidence 4566777754 5777554432111122 23556666653 22 564 668899999999999999999999
Q ss_pred HHhcCCHHHHHH
Q 018446 268 IAAVLPDLDIRY 279 (355)
Q Consensus 268 IaaiL~~~~L~~ 279 (355)
.-++...++.+.
T Consensus 193 gsai~~~~d~~~ 204 (210)
T TIGR01163 193 GSAIFGADDYKE 204 (210)
T ss_pred ChHHhCCCCHHH
Confidence 888887655444
No 477
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=50.22 E-value=24 Score=35.29 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCH-HHHHHHHHcCCcchHHHHh
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDA-WQIYYARTKGADAVLLIAA 270 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdp-yQI~eAr~~GADAVLLIaa 270 (355)
+..+=|++|+++||++|-. -.-.|.+.+++++++ +++|++. -.|.-+| +-+.+=+.+|-..|+.-..
T Consensus 167 ~AI~Ra~AY~eAGAD~if~-----~al~~~e~i~~f~~a-v~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~ 236 (289)
T COG2513 167 DAIERAQAYVEAGADAIFP-----EALTDLEEIRAFAEA-VPVPLPANITEFGKTPLLTVAELAELGVKRVSYGLT 236 (289)
T ss_pred HHHHHHHHHHHcCCcEEcc-----ccCCCHHHHHHHHHh-cCCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcH
Confidence 4567889999999999753 245779999999986 8855544 3443322 3345666778887765433
No 478
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=50.20 E-value=2.4e+02 Score=27.64 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhc----
Q 018446 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV---- 271 (355)
Q Consensus 196 ~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaai---- 271 (355)
.-||++.|..-+++||..|-|---+.-=.=..+|+..+++. +..| |+=.--..+-.+.-|...-.|.|.|.---
T Consensus 23 ~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~-lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~ 100 (239)
T PRK05265 23 YPDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRET-LKTE-LNLEMAATEEMLDIALEVKPHQVTLVPEKREEL 100 (239)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHh-cCCC-EEeccCCCHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 34899999999999999999988777777889999999985 6554 33344455667888888888888876432
Q ss_pred --------C-CHHHHHHHHHHHHHcCCcE--EEEeCCHHHHHHHhccCCCeEEEeeC
Q 018446 272 --------L-PDLDIRYMTKICKLLGLTA--LVEVHDEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 272 --------L-~~~~L~~L~~~A~~LGLea--LVEVH~~eELerAl~l~ga~iIGINN 317 (355)
. ..+.|+..++..+..|..+ +|+ -+.+.++.|..+ ||+.|=+.-
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~-GAd~VELhT 155 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEV-GADRIELHT 155 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh-CcCEEEEec
Confidence 1 2356888888888889654 443 678888888887 888876543
No 479
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=50.00 E-value=1e+02 Score=28.59 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhccCCCeEEEe
Q 018446 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGI 315 (355)
Q Consensus 255 ~eAr~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLV-EVH~~eELerAl~l~ga~iIGI 315 (355)
..+...|++++-+-...++ ..+++.|+..|+...| -|.+.+++++.+++ |++.|--
T Consensus 176 ~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~Gl~v~vwTVn~~~~~~~l~~~-GVdgiiT 232 (237)
T cd08583 176 AFCYENGIKAVTISKNYVN----DKLIEKLNKAGIYVYVYTINDLKDAQEYKKL-GVYGIYT 232 (237)
T ss_pred HHHHHcCCcEEEechhhcC----HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEEEe
Confidence 3456788887666555554 4788999999999987 56779999999997 8876643
No 480
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=49.90 E-value=71 Score=31.58 Aligned_cols=94 Identities=19% Similarity=0.117 Sum_probs=65.6
Q ss_pred ceEEeEeeecCCC-CCCCCC--CCCHHHHHHHHHHcCceEEEEeccCC---CCC----CCHHHHHHHHhcCC-CCCeecc
Q 018446 177 PALIAEVKKASPS-RGILRE--DFDPVEIARSYEKGGAACLSILTDEK---YFK----GSFENLEAVRSAGV-KCPLLCK 245 (355)
Q Consensus 177 ~aVIAEvKRaSPS-kG~I~~--~~Dp~~iA~~Ye~~GAaaISVLTD~~---fF~----GS~edL~~VR~a~v-~lPVLrK 245 (355)
..|=+|+-.--.. .+.+.. ..||++..+.+ +-|+++|.|=--+- |.. =+++-|+.++++ + ++|+..-
T Consensus 131 v~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~-~~~iPlVlh 208 (293)
T PRK07315 131 ISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEA-VPGFPIVLH 208 (293)
T ss_pred CEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHh-ccCCCEEEE
Confidence 5677787765431 222322 25888755555 78999999983333 333 248999999986 7 5996543
Q ss_pred c-cccCHHHHHHHHHcCCcchHHHHhcC
Q 018446 246 E-FIVDAWQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 246 D-FIIdpyQI~eAr~~GADAVLLIaaiL 272 (355)
= =.|+.-|+.++..+|++.|-....+.
T Consensus 209 GGSGi~~e~~~~~i~~Gi~KiNv~T~i~ 236 (293)
T PRK07315 209 GGSGIPDDQIQEAIKLGVAKVNVNTECQ 236 (293)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEccHHH
Confidence 3 35888999999999999998777766
No 481
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.63 E-value=1.1e+02 Score=28.29 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCceEEEEeccCC--------------CCCCCHHHHHHHHhcCCCCCeecc-ccc---cCHH----HHHHH
Q 018446 200 VEIARSYEKGGAACLSILTDEK--------------YFKGSFENLEAVRSAGVKCPLLCK-EFI---VDAW----QIYYA 257 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~--------------fF~GS~edL~~VR~a~v~lPVLrK-DFI---Idpy----QI~eA 257 (355)
.+.++...++|+..|.|..+.. .|.-..+.+..+++.+..+ .+.= |.. .++- .+..+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v-~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEV-EGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE-EEEEEeecCCCCCHHHHHHHHHHH
Confidence 3455566667778777776654 3444445555555543211 1111 111 2221 33457
Q ss_pred HHcCCcchHH--HHhcCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHH
Q 018446 258 RTKGADAVLL--IAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302 (355)
Q Consensus 258 r~~GADAVLL--IaaiL~~~~L~~L~~~A~~LGLeaLVEVH~~eELe 302 (355)
..+|||.|-| ....+.++++.++++..++.-=+.-+++|...++-
T Consensus 156 ~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g 202 (265)
T cd03174 156 EEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLG 202 (265)
T ss_pred HHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 7899999887 57788999999999887765434788898865543
No 482
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=49.55 E-value=2.1e+02 Score=27.93 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHH
Q 018446 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~ 278 (355)
-.++++...+.|+..+.|-| ++.+..+|++++ -|||.---+..+-.+.++..+....--+...+=+.++++
T Consensus 29 ~~~v~~~l~~~G~~~~~vat--------~~Ea~~l~~~G~-~~Ili~~~~~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~ 99 (345)
T cd07376 29 SPELAQRQLAAGARGVTVAT--------LAEAETFAEAGV-KDILMAYPLVGPAAIARLAGLLRQEAEFHVLVDSPEALA 99 (345)
T ss_pred CHHHHHHHHhCCCCcEEEec--------HHHHHHHHHcCC-CeEEEECCcCCHHHHHHHHHHHhcCCeEEEEECCHHHHH
Confidence 34688888888988877654 667777887665 566643222335455555433221001233355678888
Q ss_pred HHHHHHHHcC--CcEEEEeCC-----------HHHHHHHh---ccCCCeEEEeeC
Q 018446 279 YMTKICKLLG--LTALVEVHD-----------EREMDRVL---GIEGIELIGINN 317 (355)
Q Consensus 279 ~L~~~A~~LG--LeaLVEVH~-----------~eELerAl---~l~ga~iIGINN 317 (355)
.|.+.|.+.| +.++++|.+ ..++.++. ...+.++.||-.
T Consensus 100 ~l~~~a~~~~~~~~V~l~ID~G~~R~Gv~~~~~~~l~~~~~i~~~~~l~l~Gl~~ 154 (345)
T cd07376 100 ALAAFAAAHGVRLRVMLEVDVGGHRSGVRPEEAAALALADAVQASPGLRLAGVMA 154 (345)
T ss_pred HHHHHHHhcCCeeEEEEEeCCCCCcCCCCCcHHHHHHHHHHhccCCCeEEeEEEe
Confidence 8988998777 467888752 22344432 334677888843
No 483
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=49.40 E-value=50 Score=33.81 Aligned_cols=89 Identities=17% Similarity=0.293 Sum_probs=63.3
Q ss_pred CHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH---HhcCC--HHHHHHHHHHHH--HcCCcEEEE--eC
Q 018446 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI---AAVLP--DLDIRYMTKICK--LLGLTALVE--VH 296 (355)
Q Consensus 226 S~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI---aaiL~--~~~L~~L~~~A~--~LGLeaLVE--VH 296 (355)
+++||+-+|.. +++||+-|-..--+ --..|..+|+++|++- .+-|+ +..+..|-+.-. .=-+++++. |.
T Consensus 211 ~W~Di~wLr~~-T~LPIvvKGilt~e-DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR 288 (363)
T KOG0538|consen 211 SWKDIKWLRSI-TKLPIVVKGVLTGE-DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVR 288 (363)
T ss_pred ChhhhHHHHhc-CcCCeEEEeecccH-HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcc
Confidence 68999999996 99999999866444 5667999999998752 22222 122333333322 334777775 89
Q ss_pred CHHHHHHHhccCCCeEEEeeC
Q 018446 297 DEREMDRVLGIEGIELIGINN 317 (355)
Q Consensus 297 ~~eELerAl~l~ga~iIGINN 317 (355)
+-.|+-+||.+ ||+-|.|--
T Consensus 289 ~G~DVlKALAL-GAk~VfiGR 308 (363)
T KOG0538|consen 289 RGTDVLKALAL-GAKGVFIGR 308 (363)
T ss_pred cchHHHHHHhc-ccceEEecC
Confidence 99999999998 999888743
No 484
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=49.35 E-value=2e+02 Score=28.10 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHH----HHHcCCcchHHHHhcCCHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY----ARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~e----Ar~~GADAVLLIaaiL~~~ 275 (355)
.++++...++|+.++.|-| ++.+..+++++++ ++|.-=-++.+-.+.+ +..+| +...+=+.+
T Consensus 45 ~~i~~~~~~~G~~~~~vas--------~~Ea~~~~~~G~~-~ili~~~~~~~~~~~~~~~~~~~~~-----i~~~vDs~~ 110 (358)
T cd06819 45 PAIARRQIAAGAVGVCCQK--------LSEAEVMAAAGIR-DILITNEVVGPAKIARLAALARRAP-----LIVCVDHPD 110 (358)
T ss_pred HHHHHHHHhCCCCcEEEcc--------HHHHHHHHHCCCC-eEEEECCcCCHHHHHHHHHHhcCCC-----EEEEECCHH
Q ss_pred HHHHHHHHHHHcC--CcEEEEeCC---------HHHHHHHh----ccCCCeEEEe
Q 018446 276 DIRYMTKICKLLG--LTALVEVHD---------EREMDRVL----GIEGIELIGI 315 (355)
Q Consensus 276 ~L~~L~~~A~~LG--LeaLVEVH~---------~eELerAl----~l~ga~iIGI 315 (355)
+++.|.++|.+.| +.++++|.. .+|+...+ ..++.++.||
T Consensus 111 ~l~~l~~~a~~~~~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi 165 (358)
T cd06819 111 NVRALAAAAVEAGVRLDVLVEIDVGQGRCGVPPGEAALALARTIAALPGLRFAGL 165 (358)
T ss_pred HHHHHHHHHHhcCCceEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCceEeEE
No 485
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=49.30 E-value=9.3 Score=37.01 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhc
Q 018446 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306 (355)
Q Consensus 271 iL~~~~L~~L~~~A~~LGLeaLVEVH~~eELerAl~ 306 (355)
.++.+++++|+++|+.+|++++-||.....+..++.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~ 104 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLK 104 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHHHHHHH
Confidence 689999999999999999999999988888887765
No 486
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=49.09 E-value=1.1e+02 Score=30.03 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCC--CCCeeccccccCHHHHHHHHHcCCcchHHHHhcCC--HH----HHHHHHHHHHHcCCcE
Q 018446 227 FENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP--DL----DIRYMTKICKLLGLTA 291 (355)
Q Consensus 227 ~edL~~VR~a~v--~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~--~~----~L~~L~~~A~~LGLea 291 (355)
+..+..++++ + ++||.--==|-+..+++|-..+|||+|-+-.+++- +. -+++|.++..+.|...
T Consensus 228 l~~v~~~~~~-~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~s 299 (310)
T PRK02506 228 LANVRAFYQR-LNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEKGYQS 299 (310)
T ss_pred HHHHHHHHHh-cCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhCCCC
Confidence 5666666664 4 68999998899999999999999999999877663 32 2334555555566543
No 487
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=49.07 E-value=1.8e+02 Score=29.50 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=68.9
Q ss_pred HHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCC-CeeccccccCHHHHHHHHHcCCcchHHHHhcCCHHHHHH
Q 018446 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~l-PVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~~L~~ 279 (355)
++|+.+.+.|+..+.|. +++....+|+++.+. .|+. =.-+++.++.++..++ +.+..+=+.++++.
T Consensus 68 ~ia~~l~~~G~~g~~va--------s~~Ea~~lr~aGi~~~~I~~-l~~~~~~el~~~v~~~----~~~i~V~s~~~l~~ 134 (382)
T cd06811 68 FLARALLEAGIPGAVAV--------DFKEARALHEAGLPLGHVGH-LVQIPRHQVPAVLAMR----PEVITVYSLEKARE 134 (382)
T ss_pred HHHHHHHHcCCCeEeEe--------cHHHHHHHHHcCCCHHhEEE-ccCCCHHHHHHHHHcC----CCEEEECCHHHHHH
Confidence 69999999998876664 467778888865543 2221 0113567788877775 22344557788999
Q ss_pred HHHHHHHcC--CcEEEEeCC--------------HHHHHHH----hccCCCeEEEeeC
Q 018446 280 MTKICKLLG--LTALVEVHD--------------EREMDRV----LGIEGIELIGINN 317 (355)
Q Consensus 280 L~~~A~~LG--LeaLVEVH~--------------~eELerA----l~l~ga~iIGINN 317 (355)
|.+.|.++| ..+++.|.+ .+|+..+ ..+++.++.||-+
T Consensus 135 L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Gith 192 (382)
T cd06811 135 ISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGLTS 192 (382)
T ss_pred HHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeEcc
Confidence 999998877 457888763 3444433 2335788999955
No 488
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=49.05 E-value=57 Score=36.02 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCceEEEEec---cCC----CCCCC-HHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcC-CcchHHHH
Q 018446 199 PVEIARSYEKGGAACLSILT---DEK----YFKGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA 269 (355)
Q Consensus 199 p~~iA~~Ye~~GAaaISVLT---D~~----fF~GS-~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~G-ADAVLLIa 269 (355)
-.++|+..++.|++.|.|-. ... +..|- ..+...+|++ +++||+.--=|.++-+..++...| ||.|.+==
T Consensus 640 ~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~-~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR 718 (765)
T PRK08255 640 AVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNE-AGIATIAVGAISEADHVNSIIAAGRADLCALAR 718 (765)
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHH-cCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcH
Confidence 34789999999999999852 111 11111 3455778886 899999999999999999999877 99998877
Q ss_pred hcCCHHHHHHHHHHHHHcCCcE
Q 018446 270 AVLPDLDIRYMTKICKLLGLTA 291 (355)
Q Consensus 270 aiL~~~~L~~L~~~A~~LGLea 291 (355)
.+|.+-++ ..+.+.++|.+.
T Consensus 719 ~~l~dP~~--~~~~~~~~~~~~ 738 (765)
T PRK08255 719 PHLADPAW--TLHEAAEIGYRD 738 (765)
T ss_pred HHHhCccH--HHHHHHHcCCCC
Confidence 77766443 457788888873
No 489
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=48.80 E-value=1.3e+02 Score=31.80 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCC--------CCHHHHHHHHhcCCCCCee--ccc--c-cc-------CHHHHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFK--------GSFENLEAVRSAGVKCPLL--CKE--F-IV-------DAWQIYYA 257 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~--------GS~edL~~VR~a~v~lPVL--rKD--F-II-------dpyQI~eA 257 (355)
|-..+|..+.+.|...|=+-- .--|. ..++.|+.+|+...+.++- +.= + .. -..-|..|
T Consensus 26 dkl~Ia~~Ld~~Gv~~IE~~g-gatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A 104 (467)
T PRK14041 26 DMLPALEAFDRMGFYSMEVWG-GATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKV 104 (467)
T ss_pred HHHHHHHHHHHcCCCEEEecC-CccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHH
Confidence 567899999999998887710 00011 1257788888743344442 121 0 00 12347889
Q ss_pred HHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-------eCCHHH----HHHHhccCCCeEEEeeCCCCCccccC
Q 018446 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-------VHDERE----MDRVLGIEGIELIGINNRNLETFEVD 326 (355)
Q Consensus 258 r~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-------VH~~eE----LerAl~l~ga~iIGINNRdL~TfevD 326 (355)
..+|.|.|-+..++=+-+.+...+++|++.|+.+-.- .|+.+- ++++.++ |++.|.|-.- .=-..
T Consensus 105 ~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~-Gad~I~i~Dt---~G~l~ 180 (467)
T PRK14041 105 AEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDM-GVDSICIKDM---AGLLT 180 (467)
T ss_pred HHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCCEEEECCc---cCCcC
Confidence 9999997665555544566888899999999865422 244333 2334444 8888776431 11134
Q ss_pred hhhHHhhhcccc
Q 018446 327 NSNTKKLLEGER 338 (355)
Q Consensus 327 l~~t~~L~~~~~ 338 (355)
+..+.+|...++
T Consensus 181 P~~v~~Lv~~lk 192 (467)
T PRK14041 181 PKRAYELVKALK 192 (467)
T ss_pred HHHHHHHHHHHH
Confidence 555666655433
No 490
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.77 E-value=97 Score=29.20 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHH-HhcCCHH
Q 018446 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI-AAVLPDL 275 (355)
Q Consensus 197 ~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLI-aaiL~~~ 275 (355)
.++. .++...++||.-|- -| +-+.+-+...++ .++|++-= ...+-|+.+|..+|||.|-+- +..++.+
T Consensus 76 ~~~~-~~~~a~~aGA~Fiv---sP---~~~~~v~~~~~~--~~i~~iPG--~~T~~E~~~A~~~Gad~vklFPa~~~G~~ 144 (213)
T PRK06552 76 LDAV-TARLAILAGAQFIV---SP---SFNRETAKICNL--YQIPYLPG--CMTVTEIVTALEAGSEIVKLFPGSTLGPS 144 (213)
T ss_pred CCHH-HHHHHHHcCCCEEE---CC---CCCHHHHHHHHH--cCCCEECC--cCCHHHHHHHHHcCCCEEEECCcccCCHH
Confidence 3454 56777778888754 12 123444444444 47777763 458999999999999999874 3456655
Q ss_pred HHHHHHHHHHHcCCcEEEEeC--CHHHHHHHhccCCCeEEEeeCC
Q 018446 276 DIRYMTKICKLLGLTALVEVH--DEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLVEVH--~~eELerAl~l~ga~iIGINNR 318 (355)
.++.+. .-+.--+++=+- |.+.+...+.+ |+..+|+-..
T Consensus 145 ~ik~l~---~~~p~ip~~atGGI~~~N~~~~l~a-Ga~~vavgs~ 185 (213)
T PRK06552 145 FIKAIK---GPLPQVNVMVTGGVNLDNVKDWFAA-GADAVGIGGE 185 (213)
T ss_pred HHHHHh---hhCCCCEEEEECCCCHHHHHHHHHC-CCcEEEEchH
Confidence 555443 334423444332 45777777886 8888888643
No 491
>PRK09776 putative diguanylate cyclase; Provisional
Probab=48.68 E-value=48 Score=36.70 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccCCCeEE
Q 018446 276 DIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELI 313 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLVE-VH~~eELerAl~l~ga~iI 313 (355)
-++.++++|+++|+.++.| |.|+++++.+.++ |++.+
T Consensus 1032 ~~~~i~~~~~~~~~~~iaegVEt~~~~~~l~~~-g~~~~ 1069 (1092)
T PRK09776 1032 LISIIQGHAQRLGMKTIAGPVELPLVLDTLSGI-GVDLA 1069 (1092)
T ss_pred HHHHHHHHHHHcCCcEEecccCCHHHHHHHHHc-CCCEE
Confidence 3677889999999999998 9999999999887 77653
No 492
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=48.66 E-value=35 Score=32.45 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=42.3
Q ss_pred CCceEEeEeeecCCCCCCCCCCCCHHHHHHHHHHcCceEEEEeccCCCCCCC----HHHHHHHHhcCCCCCeeccc
Q 018446 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKE 246 (355)
Q Consensus 175 g~~aVIAEvKRaSPSkG~I~~~~Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS----~edL~~VR~a~v~lPVLrKD 246 (355)
++..||+=+-..| ..+..++|+..++.||+++.+.. |.||.-+ ++++++|.++ +++||+-=+
T Consensus 68 ~~~~vi~gv~~~~--------~~~~~~~a~~a~~~G~d~v~~~~-P~~~~~~~~~l~~~~~~ia~~-~~~pi~lYn 133 (284)
T cd00950 68 GRVPVIAGTGSNN--------TAEAIELTKRAEKAGADAALVVT-PYYNKPSQEGLYAHFKAIAEA-TDLPVILYN 133 (284)
T ss_pred CCCcEEeccCCcc--------HHHHHHHHHHHHHcCCCEEEEcc-cccCCCCHHHHHHHHHHHHhc-CCCCEEEEE
Confidence 3456776553221 23678999999999999999887 5677654 4555667665 788887443
No 493
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=48.65 E-value=80 Score=30.83 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=78.1
Q ss_pred CCHH---HHHHHHHHcCceEEEEe-ccCCCCCCCHH----HHHHHHhc-CCCCCeeccc---cccCHHHHHHHHHcCCcc
Q 018446 197 FDPV---EIARSYEKGGAACLSIL-TDEKYFKGSFE----NLEAVRSA-GVKCPLLCKE---FIVDAWQIYYARTKGADA 264 (355)
Q Consensus 197 ~Dp~---~iA~~Ye~~GAaaISVL-TD~~fF~GS~e----dL~~VR~a-~v~lPVLrKD---FIIdpyQI~eAr~~GADA 264 (355)
.|.. .+.+.+.+.|+++|-|+ |-.+|+.=+.+ .++.++++ .-.+||+.-= .----.+.-.|..+||||
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gada 104 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADG 104 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence 4554 45567778999999875 23333333333 23333332 2358887421 101112344567789999
Q ss_pred hHHHHhcC---CHHH-HHHHHHHHHHcCCcEEEE-----eCCHHHHHHHh-ccCCCeEEEeeCCCCCccccChhhHHhhh
Q 018446 265 VLLIAAVL---PDLD-IRYMTKICKLLGLTALVE-----VHDEREMDRVL-GIEGIELIGINNRNLETFEVDNSNTKKLL 334 (355)
Q Consensus 265 VLLIaaiL---~~~~-L~~L~~~A~~LGLeaLVE-----VH~~eELerAl-~l~ga~iIGINNRdL~TfevDl~~t~~L~ 334 (355)
|+++.-.. +++. ..++.++|...++..++= --+.+.+.+.. +. ..|+||-.- .-|+....++.
T Consensus 105 v~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~--pni~giK~s-----~~d~~~~~~~~ 177 (303)
T PRK03620 105 ILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC--PNLVGFKDG-----VGDIELMQRIV 177 (303)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEeC-----CCCHHHHHHHH
Confidence 99987663 4444 455667888888876642 11455666655 43 479999864 34677777775
Q ss_pred cc
Q 018446 335 EG 336 (355)
Q Consensus 335 ~~ 336 (355)
..
T Consensus 178 ~~ 179 (303)
T PRK03620 178 RA 179 (303)
T ss_pred HH
Confidence 43
No 494
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=48.65 E-value=26 Score=34.96 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.3
Q ss_pred CCcEEEEeCCHHHHHHHhccCCCeEEEeeCCCC
Q 018446 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (355)
Q Consensus 288 GLeaLVEVH~~eELerAl~l~ga~iIGINNRdL 320 (355)
....-|||.|.+|++.|+++ |+++|...|-+.
T Consensus 208 ~~kIeVEv~sleea~ea~~~-gaDiI~LDn~s~ 239 (296)
T PRK09016 208 DVPVEVEVENLDELDQALKA-GADIIMLDNFTT 239 (296)
T ss_pred CCCEEEEeCCHHHHHHHHHc-CCCEEEeCCCCh
Confidence 36689999999999999997 999999888765
No 495
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=48.18 E-value=1.2e+02 Score=29.23 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=76.4
Q ss_pred HHHHHHHHcCceEEEEe-ccCCCCCCCHH-HHHH---HHhc-CCCCCeeccccccCHH----HHHHHHHcCCcchHHHHh
Q 018446 201 EIARSYEKGGAACLSIL-TDEKYFKGSFE-NLEA---VRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLIAA 270 (355)
Q Consensus 201 ~iA~~Ye~~GAaaISVL-TD~~fF~GS~e-dL~~---VR~a-~v~lPVLrKDFIIdpy----QI~eAr~~GADAVLLIaa 270 (355)
.+.+.+.+.|+++|.|+ |-.+|+.=|.+ -.+. ++++ .-.+||+.-= .-+.. ..-.|..+|||+|+++.-
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv-~~~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA-GYGTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec-CCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 46677889999999988 33334444433 3322 2332 2358887531 11222 345578899999999865
Q ss_pred cC---CHHH-HHHHHHHHHHcCCcEEEE-----eCCHHHHHHHhccCCCeEEEeeCCCCCccccChhhHHhhhcc
Q 018446 271 VL---PDLD-IRYMTKICKLLGLTALVE-----VHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG 336 (355)
Q Consensus 271 iL---~~~~-L~~L~~~A~~LGLeaLVE-----VH~~eELerAl~l~ga~iIGINNRdL~TfevDl~~t~~L~~~ 336 (355)
.. +++. ..++-++|...++..++= .=+.+.+.+..+ .-..|+||-.- .-|+....++...
T Consensus 104 ~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~-~~pnivgiKds-----~~d~~~~~~~~~~ 172 (289)
T cd00951 104 YLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE-RCPNLVGFKDG-----VGDIELMRRIVAK 172 (289)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCEEEEEeC-----CCCHHHHHHHHHh
Confidence 44 4444 455667777777766553 124555666544 12579999654 3466666666543
No 496
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=48.06 E-value=75 Score=31.43 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=62.0
Q ss_pred ceEEeEeeecCCCCCCC----CC--CCCHHHHHHHHHHcCceEEEEeccC--CCCCC----CHHHHHHHHhcCCCCC-ee
Q 018446 177 PALIAEVKKASPSRGIL----RE--DFDPVEIARSYEKGGAACLSILTDE--KYFKG----SFENLEAVRSAGVKCP-LL 243 (355)
Q Consensus 177 ~aVIAEvKRaSPSkG~I----~~--~~Dp~~iA~~Ye~~GAaaISVLTD~--~fF~G----S~edL~~VR~a~v~lP-VL 243 (355)
.+|=||+-.-.-..+.+ .. ..||++..+-+++-|++||+|-.-. -.|.| +++-|+.++++ +++| ||
T Consensus 129 vsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~-~~iPLVl 207 (284)
T PRK12737 129 ASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREK-VSIPLVL 207 (284)
T ss_pred CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHH-hCCCEEE
Confidence 57878886654332221 11 4589877777778899988876643 34556 78899999986 7888 55
Q ss_pred ccccccCHHHHHHHHHcCCcchH
Q 018446 244 CKEFIVDAWQIYYARTKGADAVL 266 (355)
Q Consensus 244 rKDFIIdpyQI~eAr~~GADAVL 266 (355)
.=-=.++.-|+-+|..+|.--|-
T Consensus 208 HGgSG~~~e~~~kai~~Gi~KiN 230 (284)
T PRK12737 208 HGASGVPDEDVKKAISLGICKVN 230 (284)
T ss_pred eCCCCCCHHHHHHHHHCCCeEEE
Confidence 55667788888888888876553
No 497
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=48.02 E-value=37 Score=33.57 Aligned_cols=69 Identities=26% Similarity=0.336 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCCCCHHHHHHHHhcCCCCCeec--cccccCH-HHHHHHHHcCCcchHHHHhcC
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDA-WQIYYARTKGADAVLLIAAVL 272 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~GS~edL~~VR~a~v~lPVLr--KDFIIdp-yQI~eAr~~GADAVLLIaaiL 272 (355)
+..+=+++|.++||+||-|-. .=+.++++.+++. ++.|++. -.+.-.| +-+.+-..+|..-|..-...+
T Consensus 162 eAI~Ra~ay~~AGAD~vfi~g-----~~~~e~i~~~~~~-i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 162 AAIERAKAYVEAGADMIFPEA-----LTSLEEFRQFAKA-VKVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAF 233 (285)
T ss_pred HHHHHHHHHHHcCCCEEEeCC-----CCCHHHHHHHHHh-cCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHH
Confidence 456778999999999998843 2368999999886 8899843 2223223 467788888998876654444
No 498
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.90 E-value=14 Score=36.58 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=27.9
Q ss_pred CcEEEEeCCHHHHHHHhccCCCeEEEeeCCCCC
Q 018446 289 LTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (355)
Q Consensus 289 LeaLVEVH~~eELerAl~l~ga~iIGINNRdL~ 321 (355)
....|||.|.+|++.|++. |+++|...|-+.+
T Consensus 200 ~kIeVEv~tl~ea~eal~~-gaDiI~LDnm~~e 231 (289)
T PRK07896 200 LPCEVEVDSLEQLDEVLAE-GAELVLLDNFPVW 231 (289)
T ss_pred CCEEEEcCCHHHHHHHHHc-CCCEEEeCCCCHH
Confidence 5689999999999999996 9999999876533
No 499
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=47.79 E-value=65 Score=30.57 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCceEEEEeccCCCCCCCH----HHHHHHHhcCCCCCeeccccccCHHHHHHHHHcCCcchHHHHhcCCHH
Q 018446 200 VEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (355)
Q Consensus 200 ~~iA~~Ye~~GAaaISVLTD~~fF~GS~----edL~~VR~a~v~lPVLrKDFIIdpyQI~eAr~~GADAVLLIaaiL~~~ 275 (355)
......-.++|+.+ ..+=|+.-..-.. +.+..+++. -++|++-.| .+++ |...|||+|=|=-.=++.
T Consensus 24 ~~~ve~al~~Gv~~-vQlR~K~~~~~~~~~~a~~~~~lc~~-~~v~liINd----~~dl--A~~~~AdGVHlGq~D~~~- 94 (211)
T COG0352 24 LEWVEAALKGGVTA-VQLREKDLSDEEYLALAEKLRALCQK-YGVPLIIND----RVDL--ALAVGADGVHLGQDDMPL- 94 (211)
T ss_pred HHHHHHHHhCCCeE-EEEecCCCChHHHHHHHHHHHHHHHH-hCCeEEecC----cHHH--HHhCCCCEEEcCCcccch-
Confidence 44555566778555 5565654322221 123333332 467876665 4555 778999998664443332
Q ss_pred HHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhccCCCeEEEeeCC
Q 018446 276 DIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR 318 (355)
Q Consensus 276 ~L~~L~~~A~~LGLeaLV--EVH~~eELerAl~l~ga~iIGINNR 318 (355)
....+-+|=..+| -+||.+|+++|... |++-||+-.-
T Consensus 95 -----~~ar~~~~~~~iIG~S~h~~eea~~A~~~-g~DYv~~Gpi 133 (211)
T COG0352 95 -----AEARELLGPGLIIGLSTHDLEEALEAEEL-GADYVGLGPI 133 (211)
T ss_pred -----HHHHHhcCCCCEEEeecCCHHHHHHHHhc-CCCEEEECCc
Confidence 2233334444344 89999999999987 8999998654
No 500
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=47.74 E-value=1.4e+02 Score=31.84 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHcCceEEEEeccCCCCC--------CCHHHHHHHHhcCCCCC---eecc----------ccccCHHHHHH
Q 018446 198 DPVEIARSYEKGGAACLSILTDEKYFK--------GSFENLEAVRSAGVKCP---LLCK----------EFIVDAWQIYY 256 (355)
Q Consensus 198 Dp~~iA~~Ye~~GAaaISVLTD~~fF~--------GS~edL~~VR~a~v~lP---VLrK----------DFIIdpyQI~e 256 (355)
|-..+|..+.+.|..+|=|---. -|. +.++.|+.+|+...+.| +||- |=++..+ +..
T Consensus 36 d~l~ia~~ld~~G~~siE~wGGA-tfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f-v~~ 113 (468)
T PRK12581 36 DMLPVLTILDKIGYYSLECWGGA-TFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF-ISL 113 (468)
T ss_pred HHHHHHHHHHhcCCCEEEecCCc-chhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH-HHH
Confidence 56678899999888887653100 111 34678899988644444 3332 1122222 788
Q ss_pred HHHcCCcchHHHHhcCCHHHHHHHHHHHHHcCCcEEEE-------eCCH----HHHHHHhccCCCeEEEeeCCCCCcccc
Q 018446 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-------VHDE----REMDRVLGIEGIELIGINNRNLETFEV 325 (355)
Q Consensus 257 Ar~~GADAVLLIaaiL~~~~L~~L~~~A~~LGLeaLVE-------VH~~----eELerAl~l~ga~iIGINNRdL~Tfev 325 (355)
|...|.|-+-..-++=..+.++..++.+++.|+.+-+- +||. +-++.+.+. |++.|.|-.- .=-.
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~-Gad~I~IkDt---aG~l 189 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM-GADSICIKDM---AGIL 189 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc-CCCEEEECCC---CCCc
Confidence 99999998655555445567888999999999985332 2433 234445554 8888887531 1123
Q ss_pred ChhhHHhhhcccc
Q 018446 326 DNSNTKKLLEGER 338 (355)
Q Consensus 326 Dl~~t~~L~~~~~ 338 (355)
.+..+.+|.+.++
T Consensus 190 ~P~~v~~Lv~alk 202 (468)
T PRK12581 190 TPKAAKELVSGIK 202 (468)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666665543
Done!