Query 018448
Match_columns 355
No_of_seqs 232 out of 1328
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 09:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00254 40S ribosomal protein 100.0 6.6E-86 1.4E-90 622.0 23.1 219 8-226 4-222 (249)
2 KOG0830 40S ribosomal protein 100.0 1.6E-76 3.4E-81 551.8 16.1 224 34-257 1-226 (254)
3 TIGR01012 Sa_S2_E_A ribosomal 100.0 1.1E-73 2.3E-78 523.5 20.3 195 15-210 2-196 (196)
4 PRK04020 rps2P 30S ribosomal p 100.0 4.2E-69 9.2E-74 495.8 18.8 194 16-210 9-202 (204)
5 COG0052 RpsB Ribosomal protein 100.0 1E-61 2.2E-66 456.2 16.7 189 15-204 2-238 (252)
6 PRK12311 rpsB 30S ribosomal pr 100.0 4.9E-56 1.1E-60 433.1 16.5 172 19-191 1-221 (326)
7 PRK05299 rpsB 30S ribosomal pr 100.0 8E-56 1.7E-60 419.7 17.2 177 15-192 2-227 (258)
8 TIGR01011 rpsB_bact ribosomal 100.0 4.9E-55 1.1E-59 406.7 17.2 174 17-191 2-224 (225)
9 CHL00067 rps2 ribosomal protei 100.0 1.2E-53 2.6E-58 398.6 16.8 177 13-190 4-229 (230)
10 cd01425 RPS2 Ribosomal protein 100.0 1.1E-53 2.5E-58 387.7 15.7 166 22-188 1-193 (193)
11 PF00318 Ribosomal_S2: Ribosom 100.0 3E-50 6.4E-55 370.1 16.5 168 22-190 1-211 (211)
12 KOG0832 Mitochondrial/chloropl 100.0 1.3E-46 2.9E-51 350.4 16.4 182 9-191 39-242 (251)
13 PRK12570 N-acetylmuramic acid- 95.9 0.13 2.8E-06 50.4 12.3 146 56-205 38-223 (296)
14 cd05007 SIS_Etherase N-acetylm 95.1 0.21 4.6E-06 47.9 10.5 146 56-205 29-214 (257)
15 PRK05441 murQ N-acetylmuramic 95.0 0.51 1.1E-05 46.3 13.3 147 55-205 41-227 (299)
16 TIGR00274 N-acetylmuramic acid 93.8 0.86 1.9E-05 44.7 11.7 147 55-205 36-222 (291)
17 PRK00414 gmhA phosphoheptose i 91.9 5.5 0.00012 36.5 13.5 109 58-169 26-164 (192)
18 TIGR03127 RuMP_HxlB 6-phospho 91.4 6.2 0.00014 34.9 12.9 89 72-165 27-121 (179)
19 cd05005 SIS_PHI Hexulose-6-pho 91.3 7.1 0.00015 34.6 13.3 108 54-169 10-130 (179)
20 PRK10892 D-arabinose 5-phospha 91.2 5.2 0.00011 38.7 13.3 135 55-192 25-182 (326)
21 PRK13938 phosphoheptose isomer 90.4 9.6 0.00021 35.4 13.7 111 57-168 26-165 (196)
22 PF13580 SIS_2: SIS domain; PD 90.2 1.8 4E-05 37.2 8.2 94 59-152 18-137 (138)
23 cd05006 SIS_GmhA Phosphoheptos 90.1 13 0.00028 33.0 14.5 110 59-168 16-153 (177)
24 PRK13936 phosphoheptose isomer 90.1 2.6 5.6E-05 38.7 9.6 105 60-170 27-168 (197)
25 PRK10886 DnaA initiator-associ 89.8 4.5 9.8E-05 37.6 11.0 114 59-172 24-168 (196)
26 PRK00331 glucosamine--fructose 88.9 4.7 0.0001 42.7 11.7 121 72-194 286-423 (604)
27 PRK02947 hypothetical protein; 88.3 9.1 0.0002 36.4 12.2 96 59-155 23-143 (246)
28 PF10087 DUF2325: Uncharacteri 87.8 2.3 5E-05 34.6 6.8 75 77-151 1-81 (97)
29 PRK11302 DNA-binding transcrip 87.4 4.2 9E-05 38.3 9.2 92 72-167 125-225 (284)
30 PRK15482 transcriptional regul 85.8 5.9 0.00013 37.8 9.4 50 120-169 180-235 (285)
31 cd05710 SIS_1 A subgroup of th 85.6 8.1 0.00018 32.3 9.2 51 120-170 45-101 (120)
32 PRK13937 phosphoheptose isomer 85.5 15 0.00032 33.4 11.4 102 60-167 22-157 (188)
33 PRK11557 putative DNA-binding 85.2 5.3 0.00011 37.7 8.7 48 120-167 173-226 (278)
34 cd05013 SIS_RpiR RpiR-like pro 85.2 11 0.00024 30.5 9.6 50 121-170 59-114 (139)
35 PRK14101 bifunctional glucokin 84.5 11 0.00024 40.5 11.7 49 120-168 513-566 (638)
36 TIGR00441 gmhA phosphoheptose 84.2 27 0.00059 30.5 12.2 50 120-169 77-132 (154)
37 TIGR00393 kpsF KpsF/GutQ famil 83.7 12 0.00025 34.9 10.2 74 120-193 45-136 (268)
38 cd05008 SIS_GlmS_GlmD_1 SIS (S 83.2 9 0.00019 31.4 8.3 46 120-165 44-95 (126)
39 cd05014 SIS_Kpsf KpsF-like pro 81.6 6.3 0.00014 32.4 6.9 49 119-167 44-98 (128)
40 PRK11382 frlB fructoselysine-6 80.6 24 0.00053 34.9 11.7 108 60-169 30-145 (340)
41 PRK08674 bifunctional phosphog 80.1 37 0.00079 33.5 12.7 72 121-194 77-159 (337)
42 PRK11337 DNA-binding transcrip 79.7 22 0.00049 33.8 10.8 48 120-167 185-238 (292)
43 cd05009 SIS_GlmS_GlmD_2 SIS (S 77.0 43 0.00092 28.0 12.4 116 73-193 11-141 (153)
44 PRK15408 autoinducer 2-binding 76.1 26 0.00056 34.5 10.3 90 73-165 21-124 (336)
45 COG2103 Predicted sugar phosph 74.5 34 0.00074 34.3 10.5 147 55-205 39-225 (298)
46 cd06295 PBP1_CelR Ligand bindi 71.3 8.3 0.00018 35.0 5.2 45 121-166 63-107 (275)
47 TIGR01135 glmS glucosamine--fr 69.7 20 0.00042 38.2 8.3 120 73-194 289-425 (607)
48 PRK07765 para-aminobenzoate sy 69.1 12 0.00027 34.8 5.9 75 77-152 2-83 (214)
49 COG1737 RpiR Transcriptional r 68.8 23 0.00051 34.1 8.0 48 120-167 175-228 (281)
50 TIGR01470 cysG_Nterm siroheme 68.1 12 0.00027 34.7 5.7 67 73-149 30-98 (205)
51 PF01380 SIS: SIS domain SIS d 67.8 23 0.00049 28.8 6.7 95 72-171 2-110 (131)
52 PRK11543 gutQ D-arabinose 5-ph 67.6 28 0.0006 33.5 8.2 47 119-165 86-138 (321)
53 COG0279 GmhA Phosphoheptose is 66.9 1.1E+02 0.0023 28.8 11.4 114 56-169 21-164 (176)
54 cd06325 PBP1_ABC_uncharacteriz 65.3 11 0.00023 34.2 4.6 93 63-155 118-221 (281)
55 cd06294 PBP1_ycjW_transcriptio 63.4 26 0.00056 31.5 6.7 36 121-157 59-94 (270)
56 PRK11070 ssDNA exonuclease Rec 61.7 46 0.001 36.0 9.3 95 59-154 52-159 (575)
57 cd06278 PBP1_LacI_like_2 Ligan 61.4 17 0.00037 32.4 5.2 45 121-166 53-97 (266)
58 cd06267 PBP1_LacI_sugar_bindin 60.4 32 0.0007 30.1 6.7 59 121-183 54-112 (264)
59 PRK13566 anthranilate synthase 58.7 67 0.0014 35.8 10.0 75 74-152 525-605 (720)
60 PRK05670 anthranilate synthase 57.3 21 0.00046 32.1 5.1 71 78-152 2-79 (189)
61 cd06271 PBP1_AglR_RafR_like Li 56.4 24 0.00052 31.5 5.3 44 121-165 58-101 (268)
62 PF04007 DUF354: Protein of un 56.1 32 0.0007 34.6 6.6 92 61-158 12-116 (335)
63 PF02421 FeoB_N: Ferrous iron 55.7 20 0.00044 32.2 4.6 75 77-154 2-114 (156)
64 cd03420 SirA_RHOD_Pry_redox Si 55.0 23 0.0005 27.2 4.2 53 63-115 14-66 (69)
65 PF13241 NAD_binding_7: Putati 54.3 3.7 8E-05 33.7 -0.3 42 122-167 60-103 (103)
66 PTZ00295 glucosamine-fructose- 53.3 1.2E+02 0.0026 32.8 10.7 47 122-168 369-421 (640)
67 PF13407 Peripla_BP_4: Peripla 53.2 41 0.00089 30.2 6.3 34 121-155 54-89 (257)
68 PLN02981 glucosamine:fructose- 53.1 1.6E+02 0.0034 32.5 11.6 92 72-166 360-460 (680)
69 cd03786 GT1_UDP-GlcNAc_2-Epime 52.5 83 0.0018 29.9 8.5 37 120-160 275-311 (363)
70 cd06283 PBP1_RegR_EndR_KdgR_li 52.4 49 0.0011 29.5 6.6 44 121-165 54-97 (267)
71 cd05017 SIS_PGI_PMI_1 The memb 51.0 23 0.0005 29.4 4.0 56 119-175 40-106 (119)
72 TIGR03088 stp2 sugar transfera 50.3 82 0.0018 30.1 8.1 99 57-160 207-310 (374)
73 cd06318 PBP1_ABC_sugar_binding 50.1 86 0.0019 28.4 7.9 45 121-166 54-102 (282)
74 TIGR01815 TrpE-clade3 anthrani 49.7 1.1E+02 0.0023 34.3 9.8 74 75-152 516-595 (717)
75 cd06273 PBP1_GntR_like_1 This 49.3 61 0.0013 29.1 6.7 43 122-165 55-97 (268)
76 cd01748 GATase1_IGP_Synthase T 48.9 45 0.00098 30.1 5.8 33 121-153 35-79 (198)
77 cd06274 PBP1_FruR Ligand bindi 48.8 91 0.002 28.0 7.8 44 121-165 54-97 (264)
78 PF01206 TusA: Sulfurtransfera 48.2 33 0.00071 25.9 4.1 51 62-112 14-64 (70)
79 TIGR00315 cdhB CO dehydrogenas 48.0 1.1E+02 0.0023 28.1 8.0 78 76-155 29-136 (162)
80 PRK05562 precorrin-2 dehydroge 47.5 43 0.00093 32.0 5.6 31 123-153 86-118 (223)
81 COG1879 RbsB ABC-type sugar tr 46.7 48 0.001 31.5 5.9 70 88-158 52-128 (322)
82 cd06305 PBP1_methylthioribose_ 46.6 80 0.0017 28.4 7.1 43 121-164 54-98 (273)
83 PRK15179 Vi polysaccharide bio 46.3 53 0.0012 36.3 6.8 112 54-170 527-644 (694)
84 cd06299 PBP1_LacI_like_13 Liga 45.6 83 0.0018 28.2 7.0 45 121-166 54-98 (265)
85 cd04949 GT1_gtfA_like This fam 45.1 88 0.0019 29.8 7.4 89 59-151 219-308 (372)
86 PRK15484 lipopolysaccharide 1, 44.2 68 0.0015 31.7 6.7 99 58-160 207-315 (380)
87 cd01743 GATase1_Anthranilate_S 43.8 64 0.0014 28.7 5.9 72 78-152 1-78 (184)
88 cd06300 PBP1_ABC_sugar_binding 43.6 35 0.00076 30.9 4.3 44 121-165 59-104 (272)
89 PRK06456 acetolactate synthase 43.3 1.1E+02 0.0023 32.3 8.3 72 61-134 196-285 (572)
90 cd03808 GT1_cap1E_like This fa 43.2 2.3E+02 0.0049 25.4 9.4 97 60-160 204-301 (359)
91 PTZ00394 glucosamine-fructose- 42.9 2.5E+02 0.0054 30.9 11.2 96 71-168 350-453 (670)
92 COG0560 SerB Phosphoserine pho 42.4 49 0.0011 30.8 5.1 98 65-172 82-190 (212)
93 cd06285 PBP1_LacI_like_7 Ligan 42.4 87 0.0019 28.2 6.6 35 121-156 54-88 (265)
94 cd05844 GT1_like_7 Glycosyltra 42.2 86 0.0019 29.4 6.8 90 59-151 203-300 (367)
95 CHL00101 trpG anthranilate syn 42.2 87 0.0019 28.3 6.6 72 78-152 2-79 (190)
96 PRK05749 3-deoxy-D-manno-octul 41.7 1.1E+02 0.0025 30.3 7.9 91 59-151 246-350 (425)
97 cd00291 SirA_YedF_YeeD SirA, Y 41.5 52 0.0011 24.4 4.3 43 62-104 13-55 (69)
98 PTZ00295 glucosamine-fructose- 41.2 3.4E+02 0.0075 29.4 11.9 118 72-193 493-626 (640)
99 COG1880 CdhB CO dehydrogenase/ 40.2 1.2E+02 0.0027 28.2 7.1 94 64-166 27-153 (170)
100 cd06279 PBP1_LacI_like_3 Ligan 39.9 59 0.0013 29.9 5.2 44 121-166 55-98 (283)
101 KOG1554 COP9 signalosome, subu 39.3 13 0.00028 37.5 0.8 42 101-146 140-183 (347)
102 PRK11009 aphA acid phosphatase 39.2 2.4E+02 0.0052 27.1 9.3 110 53-168 96-224 (237)
103 TIGR01591 Fdh-alpha formate de 39.0 3.8E+02 0.0083 28.7 11.7 107 42-151 57-190 (671)
104 PF13528 Glyco_trans_1_3: Glyc 39.0 69 0.0015 30.1 5.6 35 121-158 93-127 (318)
105 PF04413 Glycos_transf_N: 3-De 38.9 45 0.00098 30.5 4.2 86 62-151 34-124 (186)
106 cd06270 PBP1_GalS_like Ligand 38.4 1E+02 0.0022 27.8 6.4 35 121-156 54-88 (268)
107 COG0608 RecJ Single-stranded D 38.4 2E+02 0.0043 30.1 9.4 93 57-151 17-119 (491)
108 cd03819 GT1_WavL_like This fam 38.4 91 0.002 28.9 6.3 96 59-158 200-300 (355)
109 PRK00025 lpxB lipid-A-disaccha 38.4 1.7E+02 0.0038 28.2 8.4 85 59-154 204-289 (380)
110 cd06272 PBP1_hexuronate_repres 38.2 99 0.0022 27.7 6.3 42 121-164 50-91 (261)
111 PRK06774 para-aminobenzoate sy 37.8 1.1E+02 0.0023 27.6 6.5 70 78-152 2-79 (191)
112 PF14336 DUF4392: Domain of un 36.9 1.8E+02 0.0039 28.7 8.3 21 136-156 166-186 (291)
113 cd03796 GT1_PIG-A_like This fa 36.6 1.2E+02 0.0025 29.8 7.0 98 55-156 204-303 (398)
114 TIGR00566 trpG_papA glutamine 36.6 88 0.0019 28.3 5.7 30 122-152 43-79 (188)
115 PF05293 ASFV_L11L: African sw 36.4 15 0.00032 29.5 0.5 18 307-327 38-55 (78)
116 PLN02335 anthranilate synthase 36.2 98 0.0021 29.0 6.1 77 73-152 16-98 (222)
117 cd03422 YedF YedF is a bacteri 36.1 76 0.0016 24.4 4.5 41 64-104 15-55 (69)
118 PRK06718 precorrin-2 dehydroge 35.8 85 0.0018 29.0 5.6 28 120-148 68-97 (202)
119 cd06307 PBP1_uncharacterized_s 35.7 1E+02 0.0022 28.0 6.0 31 122-152 58-90 (275)
120 cd06277 PBP1_LacI_like_1 Ligan 35.3 1.2E+02 0.0025 27.4 6.3 41 121-163 57-97 (268)
121 TIGR02634 xylF D-xylose ABC tr 35.1 1.5E+02 0.0033 27.9 7.3 35 121-156 53-89 (302)
122 COG0028 IlvB Thiamine pyrophos 34.7 2.4E+02 0.0051 30.4 9.3 106 60-168 188-316 (550)
123 cd03818 GT1_ExpC_like This fam 34.5 1.7E+02 0.0036 28.6 7.7 101 57-161 225-339 (396)
124 cd03812 GT1_CapH_like This fam 34.3 2E+02 0.0043 26.7 7.8 89 59-151 207-296 (358)
125 PRK13181 hisH imidazole glycer 34.1 1.2E+02 0.0027 27.4 6.3 33 121-153 36-80 (199)
126 cd06292 PBP1_LacI_like_10 Liga 34.1 76 0.0017 28.6 4.9 45 121-166 54-104 (273)
127 cd01536 PBP1_ABC_sugar_binding 34.0 1.8E+02 0.0039 25.6 7.2 92 63-154 108-217 (267)
128 cd01574 PBP1_LacI Ligand-bindi 33.9 1.7E+02 0.0037 26.1 7.1 35 121-156 55-89 (264)
129 cd06306 PBP1_TorT-like TorT-li 33.8 1.3E+02 0.0028 27.5 6.4 31 121-151 56-87 (268)
130 PRK01710 murD UDP-N-acetylmura 33.6 2.6E+02 0.0057 28.6 9.2 120 49-183 16-140 (458)
131 cd01575 PBP1_GntR Ligand-bindi 33.6 1.9E+02 0.0041 25.8 7.3 35 121-155 54-88 (268)
132 cd06311 PBP1_ABC_sugar_binding 33.5 1E+02 0.0022 28.0 5.6 35 121-156 59-95 (274)
133 cd06298 PBP1_CcpA_like Ligand- 33.5 90 0.0019 27.9 5.2 31 122-152 55-85 (268)
134 PF06258 Mito_fiss_Elm1: Mitoc 33.3 2.8E+02 0.0061 27.5 9.1 76 73-151 180-255 (311)
135 cd06282 PBP1_GntR_like_2 Ligan 33.2 1.6E+02 0.0034 26.2 6.7 35 121-156 54-89 (266)
136 cd03822 GT1_ecORF704_like This 32.2 1.8E+02 0.0039 26.6 7.0 91 60-151 201-299 (366)
137 cd06317 PBP1_ABC_sugar_binding 32.2 1.2E+02 0.0025 27.3 5.8 35 121-156 55-91 (275)
138 cd06296 PBP1_CatR_like Ligand- 32.1 98 0.0021 27.8 5.2 47 121-168 54-101 (270)
139 PRK00299 sulfur transfer prote 32.0 86 0.0019 25.0 4.3 41 64-104 25-65 (81)
140 PRK15490 Vi polysaccharide bio 32.0 2.2E+02 0.0048 31.2 8.6 103 54-161 408-511 (578)
141 PLN02846 digalactosyldiacylgly 31.7 1.4E+02 0.0029 31.6 6.8 93 54-152 238-331 (462)
142 cd06302 PBP1_LsrB_Quorum_Sensi 31.7 1.1E+02 0.0024 28.7 5.7 35 121-156 55-91 (298)
143 cd06289 PBP1_MalI_like Ligand- 31.5 1.1E+02 0.0024 27.2 5.5 47 121-168 54-101 (268)
144 cd03821 GT1_Bme6_like This fam 31.4 2E+02 0.0043 26.1 7.1 75 75-151 234-311 (375)
145 COG1519 KdtA 3-deoxy-D-manno-o 31.3 1E+02 0.0022 32.5 5.7 89 53-151 57-152 (419)
146 TIGR01672 AphA HAD superfamily 31.1 2.3E+02 0.0049 27.2 7.8 97 65-168 119-224 (237)
147 COG0794 GutQ Predicted sugar p 30.9 4.8E+02 0.01 24.9 10.2 107 61-170 27-142 (202)
148 PRK07649 para-aminobenzoate/an 30.9 1.6E+02 0.0034 27.0 6.4 71 78-152 2-79 (195)
149 TIGR01855 IMP_synth_hisH imida 30.6 1.4E+02 0.003 27.1 6.0 15 138-152 64-78 (196)
150 cd03423 SirA SirA (also known 30.3 94 0.002 23.7 4.1 51 63-113 14-64 (69)
151 cd01538 PBP1_ABC_xylose_bindin 30.3 97 0.0021 28.7 5.0 35 121-156 54-90 (288)
152 COG1648 CysG Siroheme synthase 29.4 1.8E+02 0.0038 27.5 6.6 29 123-151 73-103 (210)
153 cd03421 SirA_like_N SirA_like_ 29.3 1.3E+02 0.0029 22.5 4.8 39 63-102 14-52 (67)
154 TIGR00173 menD 2-succinyl-5-en 29.2 3.8E+02 0.0083 27.3 9.5 103 62-168 201-324 (432)
155 cd04951 GT1_WbdM_like This fam 29.1 2.3E+02 0.005 26.1 7.3 90 57-150 201-291 (360)
156 PRK10637 cysG siroheme synthas 29.0 1.2E+02 0.0025 31.6 5.8 27 122-148 72-100 (457)
157 cd01542 PBP1_TreR_like Ligand- 28.9 1.1E+02 0.0024 27.2 5.0 43 121-166 54-96 (259)
158 cd01141 TroA_d Periplasmic bin 28.5 76 0.0017 27.7 3.8 35 117-151 64-98 (186)
159 PRK05858 hypothetical protein; 28.5 2.1E+02 0.0046 30.0 7.7 72 61-134 192-274 (542)
160 cd06297 PBP1_LacI_like_12 Liga 28.3 1.9E+02 0.0042 26.3 6.6 34 122-156 55-88 (269)
161 cd06319 PBP1_ABC_sugar_binding 28.3 2.4E+02 0.0052 25.4 7.1 61 121-185 54-117 (277)
162 KOG1401 Acetylornithine aminot 28.1 94 0.002 32.8 4.9 65 49-113 88-164 (433)
163 PRK06048 acetolactate synthase 27.9 2.1E+02 0.0045 30.2 7.5 72 61-134 196-285 (561)
164 cd06308 PBP1_sensor_kinase_lik 27.7 1.3E+02 0.0027 27.3 5.2 34 121-155 55-90 (270)
165 PF11238 DUF3039: Protein of u 27.6 42 0.00092 26.2 1.8 19 136-154 15-33 (58)
166 COG1029 FwdB Formylmethanofura 27.2 1.2E+02 0.0026 31.8 5.3 43 60-102 67-109 (429)
167 TIGR00888 guaA_Nterm GMP synth 27.1 1.9E+02 0.0041 25.9 6.1 18 135-152 60-77 (188)
168 TIGR03457 sulphoacet_xsc sulfo 27.0 2E+02 0.0044 30.4 7.3 72 61-134 185-274 (579)
169 COG0449 GlmS Glucosamine 6-pho 26.9 1.1E+02 0.0024 33.6 5.3 62 136-197 348-420 (597)
170 cd01742 GATase1_GMP_Synthase T 26.8 2.3E+02 0.005 24.8 6.6 16 138-153 63-78 (181)
171 PRK14987 gluconate operon tran 26.7 1.3E+02 0.0028 28.5 5.2 99 56-155 34-152 (331)
172 PRK08322 acetolactate synthase 26.4 3.3E+02 0.0072 28.4 8.6 72 61-134 185-274 (547)
173 PRK09259 putative oxalyl-CoA d 26.4 2.3E+02 0.005 29.9 7.6 73 60-134 201-284 (569)
174 KOG4683 Uncharacterized conser 26.3 1.2E+02 0.0027 32.0 5.3 69 279-347 378-457 (549)
175 cd01741 GATase1_1 Subgroup of 26.3 2.6E+02 0.0056 24.7 6.8 36 119-154 43-90 (188)
176 PRK00994 F420-dependent methyl 25.6 97 0.0021 30.7 4.2 36 121-156 59-98 (277)
177 TIGR02149 glgA_Coryne glycogen 25.6 2.7E+02 0.0059 26.5 7.3 45 107-151 264-310 (388)
178 PRK08857 para-aminobenzoate sy 25.5 2.7E+02 0.0058 25.2 6.9 71 78-152 2-79 (193)
179 cd04962 GT1_like_5 This family 25.2 3.6E+02 0.0077 25.3 7.9 86 60-150 213-299 (371)
180 PRK15395 methyl-galactoside AB 25.1 1.8E+02 0.004 28.0 6.1 34 121-155 80-115 (330)
181 TIGR02417 fruct_sucro_rep D-fr 25.0 1.7E+02 0.0036 27.6 5.6 47 121-168 115-162 (327)
182 PRK15427 colanic acid biosynth 24.9 2.4E+02 0.0052 28.3 7.1 102 56-161 234-343 (406)
183 PRK08007 para-aminobenzoate sy 24.9 1.6E+02 0.0034 26.7 5.2 72 78-152 2-79 (187)
184 cd04795 SIS SIS domain. SIS (S 24.6 2.5E+02 0.0055 20.9 5.7 33 120-152 45-81 (87)
185 PRK08266 hypothetical protein; 24.6 2.7E+02 0.0058 29.1 7.6 73 62-136 195-277 (542)
186 cd01545 PBP1_SalR Ligand-bindi 24.5 1.5E+02 0.0034 26.4 5.1 35 121-156 55-90 (270)
187 CHL00197 carA carbamoyl-phosph 24.5 2.5E+02 0.0053 29.1 7.1 71 76-152 193-270 (382)
188 PRK00945 acetyl-CoA decarbonyl 24.3 5.2E+02 0.011 23.9 8.6 79 77-155 37-144 (171)
189 PRK06882 acetolactate synthase 24.3 3.2E+02 0.007 28.8 8.1 73 62-136 196-286 (574)
190 PRK13170 hisH imidazole glycer 24.2 2.3E+02 0.005 25.9 6.2 13 140-152 65-77 (196)
191 PRK07710 acetolactate synthase 24.2 2.9E+02 0.0063 29.2 7.8 71 62-134 205-293 (571)
192 PTZ00394 glucosamine-fructose- 24.1 7.9E+02 0.017 27.1 11.2 114 73-193 524-656 (670)
193 PF07085 DRTGG: DRTGG domain; 23.9 68 0.0015 26.1 2.5 29 123-151 62-91 (105)
194 COG1954 GlpP Glycerol-3-phosph 23.9 75 0.0016 29.9 2.9 127 17-150 14-149 (181)
195 cd01147 HemV-2 Metal binding p 23.9 1.2E+02 0.0026 27.6 4.4 40 113-152 65-105 (262)
196 TIGR02815 agaS_fam putative su 23.8 7.6E+02 0.017 24.9 12.4 113 75-189 42-177 (372)
197 cd01542 PBP1_TreR_like Ligand- 23.5 1.8E+02 0.0038 25.9 5.3 21 63-84 103-123 (259)
198 COG3535 Uncharacterized conser 23.4 69 0.0015 32.9 2.8 38 121-170 294-331 (357)
199 PF01497 Peripla_BP_2: Peripla 23.3 1.1E+02 0.0023 27.3 3.9 40 117-156 55-94 (238)
200 cd03811 GT1_WabH_like This fam 23.3 3.6E+02 0.0079 23.9 7.2 73 75-151 220-293 (353)
201 PRK06895 putative anthranilate 23.3 2.7E+02 0.0057 25.1 6.4 70 77-152 3-79 (190)
202 cd01540 PBP1_arabinose_binding 23.2 2.6E+02 0.0057 25.4 6.5 32 121-152 53-86 (289)
203 PRK08978 acetolactate synthase 23.1 3.1E+02 0.0068 28.7 7.7 73 61-135 185-275 (548)
204 PRK10014 DNA-binding transcrip 22.8 2E+02 0.0043 27.2 5.7 109 56-166 35-164 (342)
205 TIGR02137 HSK-PSP phosphoserin 22.8 1.9E+02 0.0041 26.7 5.4 92 65-169 73-171 (203)
206 cd03820 GT1_amsD_like This fam 22.7 3.8E+02 0.0082 23.8 7.2 89 59-151 193-282 (348)
207 PRK13143 hisH imidazole glycer 22.6 2.5E+02 0.0054 25.6 6.1 20 135-154 61-80 (200)
208 cd06301 PBP1_rhizopine_binding 22.5 1.4E+02 0.0031 26.8 4.5 42 122-164 56-101 (272)
209 PLN02275 transferase, transfer 22.5 2E+02 0.0043 28.2 5.9 95 54-151 223-339 (371)
210 PF01973 MAF_flag10: Protein o 22.4 2.2E+02 0.0048 24.9 5.6 73 75-150 24-98 (170)
211 cd06314 PBP1_tmGBP Periplasmic 22.3 2.7E+02 0.0058 25.2 6.3 34 121-156 54-89 (271)
212 PF00205 TPP_enzyme_M: Thiamin 22.3 1.2E+02 0.0026 25.5 3.8 68 64-133 3-88 (137)
213 PRK08199 thiamine pyrophosphat 22.1 3E+02 0.0066 28.9 7.4 71 62-134 194-282 (557)
214 TIGR00118 acolac_lg acetolacta 21.8 3.5E+02 0.0076 28.4 7.8 71 62-134 191-279 (558)
215 cd06322 PBP1_ABC_sugar_binding 21.6 1.9E+02 0.0041 26.0 5.1 35 121-156 54-90 (267)
216 cd06320 PBP1_allose_binding Pe 21.6 1.4E+02 0.0031 27.0 4.3 41 122-163 57-99 (275)
217 cd01149 HutB Hemin binding pro 21.6 1.1E+02 0.0025 27.7 3.7 39 113-151 49-87 (235)
218 cd01537 PBP1_Repressors_Sugar_ 21.5 1.6E+02 0.0035 25.6 4.5 119 63-182 107-248 (264)
219 TIGR02193 heptsyl_trn_I lipopo 21.4 5.8E+02 0.013 24.2 8.6 33 120-156 252-284 (319)
220 cd02767 MopB_ydeP The MopB_yde 21.3 7.2E+02 0.016 26.9 10.1 101 49-155 77-201 (574)
221 cd06321 PBP1_ABC_sugar_binding 21.3 3.1E+02 0.0068 24.7 6.5 35 121-156 56-92 (271)
222 PRK06276 acetolactate synthase 21.1 3.3E+02 0.0071 29.0 7.5 72 61-134 192-281 (586)
223 PF01075 Glyco_transf_9: Glyco 21.0 2.5E+02 0.0054 25.4 5.8 81 66-154 127-211 (247)
224 PRK00421 murC UDP-N-acetylmura 20.9 3E+02 0.0065 28.1 7.0 57 121-178 65-124 (461)
225 PF13844 Glyco_transf_41: Glyc 20.9 1.6E+02 0.0036 31.3 5.1 79 74-153 312-392 (468)
226 COG0771 MurD UDP-N-acetylmuram 20.9 3.8E+02 0.0081 28.5 7.7 122 49-187 9-137 (448)
227 PRK08155 acetolactate synthase 20.7 2.8E+02 0.0061 29.2 6.8 73 61-135 200-290 (564)
228 TIGR00644 recJ single-stranded 20.7 4.3E+02 0.0092 28.2 8.2 93 60-153 38-142 (539)
229 TIGR00732 dprA DNA protecting 20.7 2.6E+02 0.0056 26.4 6.0 59 132-205 84-142 (220)
230 PLN02501 digalactosyldiacylgly 20.7 2.8E+02 0.006 31.6 6.9 94 53-152 555-649 (794)
231 PRK05637 anthranilate synthase 20.5 2.9E+02 0.0062 25.7 6.2 72 77-152 3-80 (208)
232 TIGR01441 GPR GPR endopeptidas 20.3 89 0.0019 32.3 2.9 57 121-186 173-255 (358)
233 cd06288 PBP1_sucrose_transcrip 20.3 2.2E+02 0.0048 25.4 5.2 46 121-168 55-100 (269)
234 PRK06965 acetolactate synthase 20.0 3.9E+02 0.0084 28.5 7.7 72 61-134 210-299 (587)
No 1
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=6.6e-86 Score=622.00 Aligned_cols=219 Identities=63% Similarity=1.059 Sum_probs=212.9
Q ss_pred CCccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchh
Q 018448 8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYG 87 (355)
Q Consensus 8 ~~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~ 87 (355)
+++++++|++++++||+||+||||++|||+|++||||+|.||+|||||+|||++|++|+++|++++++++|+|||||+++
T Consensus 4 ~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~ 83 (249)
T PTZ00254 4 GPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPYG 83 (249)
T ss_pred CcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHH
Confidence 47899999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecC
Q 018448 88 QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (355)
Q Consensus 88 qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~ 167 (355)
+++|+|||++||++||+|||+|||||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||||||
T Consensus 84 ~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~ 163 (249)
T PTZ00254 84 QRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPC 163 (249)
T ss_pred HHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhhhhhh
Q 018448 168 NNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAID 226 (355)
Q Consensus 168 NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~~~~~ 226 (355)
||||.+||+||||+|+|+|+++||+++|+++|+|||||||||||||+|+||+++++.++
T Consensus 164 Ndds~~SI~li~~lLar~Vl~~rG~~~r~~~~~v~~d~f~~r~~~~~~~~~~~~~~~~~ 222 (249)
T PTZ00254 164 NNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAG 222 (249)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhCccccCCCCCcCceeccccChhhhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999887665444
No 2
>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-76 Score=551.83 Aligned_cols=224 Identities=56% Similarity=0.947 Sum_probs=199.6
Q ss_pred CCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCccc
Q 018448 34 CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (355)
Q Consensus 34 ~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLT 113 (355)
+|++|++||||+|+||||||||++|||||.+|+|.|++|+|++||.++|+|++|||+|+|||++||+++|+|||+||+||
T Consensus 1 ~~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~aienp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 1 LNFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CCcccccccccccCCceEEeeccccHHHHHHHHHHHhhccCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhcCC
Q 018448 114 NQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193 (355)
Q Consensus 114 Nqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rGti 193 (355)
||+|++|+|||||||+|||.|||+|+|++|+|+|||+||||||++++|||+|||||||.|||+++||+|+|+||+|||++
T Consensus 81 n~iq~~f~epr~lvvtdpr~d~q~~~E~s~~n~p~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrgti 160 (254)
T KOG0830|consen 81 NQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRGTI 160 (254)
T ss_pred hHHHHhhcCCceeeecCcccccchhhhhhhcCCceEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcccccccccccCcccccchhHHhhhhhhhhhhhhccCCCCCCCCCCcc-cCCCCCCCCCC
Q 018448 194 RP-GHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQI-ADGGWAGGEVQ 257 (355)
Q Consensus 194 s~-~~~wev~pDLffyRdpeEie~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 257 (355)
++ .+||++||||||||||||+|+|||+.++.+....+....--.++.+|+..+ +.++|.+....
T Consensus 161 s~~~~~~~~m~dl~FyrDpeE~e~eeqAa~~ka~t~eefqge~ta~a~eftatq~~vadw~e~~q~ 226 (254)
T KOG0830|consen 161 SRLQHPWEVMPDLYFYRDPEETEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGMQV 226 (254)
T ss_pred hhhccchhhcCCcccccCccccchhhhcccchhhcccccccccccCCccccccCcccccccccccc
Confidence 97 999999999999999999999776544222222210000112455665433 36778776554
No 3
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=1.1e-73 Score=523.53 Aligned_cols=195 Identities=56% Similarity=0.972 Sum_probs=192.3
Q ss_pred cHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHH
Q 018448 15 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKF 94 (355)
Q Consensus 15 ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKf 94 (355)
|++++++||+||+|+||++|||+|++||||+|+||+|||||+|||++|++|+++|.++. +++|||||||++++++|+++
T Consensus 2 ~~~~i~~ll~agvH~Gh~~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~ 80 (196)
T TIGR01012 2 KLVPVDKYLAAGVHIGTQNKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKF 80 (196)
T ss_pred ccccHHHHHhCCeecCCCcCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHH
Confidence 56799999999999999999999999999999889999999999999999999999998 99999999999999999999
Q ss_pred HHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcch
Q 018448 95 AKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (355)
Q Consensus 95 A~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~S 174 (355)
|+++|++||++||+|||||||++..|++||+|||+||+.|+|||+||+++||||||||||||||++|||||||||||.+|
T Consensus 81 A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~S 160 (196)
T TIGR01012 81 AKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHS 160 (196)
T ss_pred HHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccccccC
Q 018448 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 210 (355)
Q Consensus 175 I~Li~~lLareVL~~rGtis~~~~wev~pDLffyRd 210 (355)
|+|++|+|+|+|+++||+++++++|+||||+|||||
T Consensus 161 i~li~~lla~ail~~~g~~~~~~~~~~~~d~f~~~~ 196 (196)
T TIGR01012 161 LALIYWLLAREILRMRGTISRDQDWDVMYEEFFYRD 196 (196)
T ss_pred HHHHHHHHHHHHHHhhCccCCCCCCccChhhhcccC
Confidence 999999999999999999999999999999999997
No 4
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=4.2e-69 Score=495.78 Aligned_cols=194 Identities=41% Similarity=0.712 Sum_probs=190.1
Q ss_pred HHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHH
Q 018448 16 EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFA 95 (355)
Q Consensus 16 e~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA 95 (355)
...+++||+||+|+||+.+||+|++||||+|+||+|||||+|||++|++|+++|.++ ++++|||||||++++++|++||
T Consensus 9 ~v~i~~ll~ag~H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A 87 (204)
T PRK04020 9 LVPLEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFA 87 (204)
T ss_pred eeeHHHHHhCCeEcCCCcCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHH
Confidence 367999999999999999999999999999988999999999999999999999998 7899999999999999999999
Q ss_pred HHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchH
Q 018448 96 KYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSI 175 (355)
Q Consensus 96 ~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI 175 (355)
+++|++||++||+||+||||+..+|++||+|||+||+.|++||+||+++||||||||||||||++|||||||||||.+||
T Consensus 88 ~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI 167 (204)
T PRK04020 88 EVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKAL 167 (204)
T ss_pred HHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccccccC
Q 018448 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 210 (355)
Q Consensus 176 ~Li~~lLareVL~~rGtis~~~~wev~pDLffyRd 210 (355)
+|++|+|+++|+++||+++++++|+||+|+|++|.
T Consensus 168 ~li~~ll~~aIl~~kg~~~~~~~~~v~~~~f~~~~ 202 (204)
T PRK04020 168 ALVYWLLAREILRERGEIKPDEDLPVPVEDFETKL 202 (204)
T ss_pred HHHHHHHHHHHHHhhCccCCCCCCCcCHHHHhhhh
Confidence 99999999999999999999999999999999885
No 5
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-61 Score=456.20 Aligned_cols=189 Identities=33% Similarity=0.505 Sum_probs=172.9
Q ss_pred cHHHHHHHHHcCceecc--CCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHH
Q 018448 15 KEADIQMMLAAEVHLGT--KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAV 91 (355)
Q Consensus 15 ke~dv~kLLaAgvHLG~--~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraV 91 (355)
..+++++||+||+|||| +.|||+|++|||+.| ||||||||.||+++|..|++++..+ +++++|||||||.|++++|
T Consensus 2 ~~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~R-ngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V 80 (252)
T COG0052 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPV 80 (252)
T ss_pred CcCCHHHHHHcCccccccccccCCcccccceeec-CCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHH
Confidence 34789999999999997 459999999999999 6999999999999999999999998 6899999999999999999
Q ss_pred HHHHHHcCCccccCCccCCcccCccccc-----c----------------------------------------cCCceE
Q 018448 92 LKFAKYTHAHAIAGRHTPGTFTNQMQTS-----F----------------------------------------NEPRLL 126 (355)
Q Consensus 92 lKfA~~tGa~~IagRwtpGtLTNqiq~~-----F----------------------------------------reP~LL 126 (355)
+++|++||++||++||+|||||||.+.+ + +.||+|
T Consensus 81 ~~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l 160 (252)
T COG0052 81 KEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVL 160 (252)
T ss_pred HHHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEE
Confidence 9999999999999999999999987732 2 249999
Q ss_pred EEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 018448 127 ILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVD 204 (355)
Q Consensus 127 VVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pD 204 (355)
||+||+.|+|||+||+++||||||||||||+|+.|||+||||||+.+||.|++|+|+++|+++||....+.-|+++++
T Consensus 161 ~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~~~~~~~~~~~~~ 238 (252)
T COG0052 161 FVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGALDEEEAAIEED 238 (252)
T ss_pred EEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhccccchhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999986543333444444
No 6
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=4.9e-56 Score=433.14 Aligned_cols=172 Identities=27% Similarity=0.376 Sum_probs=164.0
Q ss_pred HHHHHHcCceeccC--CCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHH
Q 018448 19 IQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFA 95 (355)
Q Consensus 19 v~kLLaAgvHLG~~--n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlKfA 95 (355)
+++||++|+||||+ +|||+|++||||.|+ |+|||||.||+.+|++|+++|..+ +++++|||||||++++++|+++|
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~-gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A 79 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRN-NIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAA 79 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceecccC-CcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 46899999999984 599999999999996 999999999999999999999987 89999999999999999999999
Q ss_pred HHcCCccccCCccCCcccCccccc--------------------c--------------------------cCCceEEEe
Q 018448 96 KYTHAHAIAGRHTPGTFTNQMQTS--------------------F--------------------------NEPRLLILT 129 (355)
Q Consensus 96 ~~tGa~~IagRwtpGtLTNqiq~~--------------------F--------------------------reP~LLVVt 129 (355)
+++|++||++||+|||||||.+.+ + ++||+|||+
T Consensus 80 ~~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~ 159 (326)
T PRK12311 80 KRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVI 159 (326)
T ss_pred HHhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEe
Confidence 999999999999999999998631 1 389999999
Q ss_pred CCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhc
Q 018448 130 DPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191 (355)
Q Consensus 130 DP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rG 191 (355)
||+.|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|++++.
T Consensus 160 d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~ 221 (326)
T PRK12311 160 DTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS 221 (326)
T ss_pred CCccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 7
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=8e-56 Score=419.70 Aligned_cols=177 Identities=29% Similarity=0.398 Sum_probs=168.1
Q ss_pred cHHHHHHHHHcCceeccC--CCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHH
Q 018448 15 KEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAV 91 (355)
Q Consensus 15 ke~dv~kLLaAgvHLG~~--n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraV 91 (355)
+..++++||++|+|+||+ +|||+|++||||.| +|+|||||.+|+++|++|+++|..+ +++++||||||+++++++|
T Consensus 2 ~~~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r-~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V 80 (258)
T PRK05299 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGER-NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAI 80 (258)
T ss_pred CcCCHHHHHhcCcccccccCcCCCccccceeccc-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHH
Confidence 346799999999999984 59999999999999 6999999999999999999999986 8999999999999999999
Q ss_pred HHHHHHcCCccccCCccCCcccCccccc-----------------c-----------------------------cCCce
Q 018448 92 LKFAKYTHAHAIAGRHTPGTFTNQMQTS-----------------F-----------------------------NEPRL 125 (355)
Q Consensus 92 lKfA~~tGa~~IagRwtpGtLTNqiq~~-----------------F-----------------------------reP~L 125 (355)
+++|+++|++||++||+||+||||.+.+ | ++||+
T Consensus 81 ~~~A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~ 160 (258)
T PRK05299 81 AEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDA 160 (258)
T ss_pred HHHHHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCE
Confidence 9999999999999999999999997621 1 58999
Q ss_pred EEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhcC
Q 018448 126 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (355)
Q Consensus 126 LVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rGt 192 (355)
|||+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++|+|+++|++++|.
T Consensus 161 iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~~ 227 (258)
T PRK05299 161 LFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQG 227 (258)
T ss_pred EEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 8
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=4.9e-55 Score=406.71 Aligned_cols=174 Identities=29% Similarity=0.417 Sum_probs=165.5
Q ss_pred HHHHHHHHcCceecc--CCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 018448 17 ADIQMMLAAEVHLGT--KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (355)
Q Consensus 17 ~dv~kLLaAgvHLG~--~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlK 93 (355)
.++++|+++|+|+|| ++|||+|++||||+| ||+|||||.+|+.+|++|+++|..+ +++++|||||||++.+++|++
T Consensus 2 ~~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r-~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~ 80 (225)
T TIGR01011 2 VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKE 80 (225)
T ss_pred cCHHHHHHcCcccccccCcCCcccccceeeee-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 368999999999998 459999999999999 5999999999999999999999986 899999999999999999999
Q ss_pred HHHHcCCccccCCccCCcccCccccc-----------------c-----------------------------cCCceEE
Q 018448 94 FAKYTHAHAIAGRHTPGTFTNQMQTS-----------------F-----------------------------NEPRLLI 127 (355)
Q Consensus 94 fA~~tGa~~IagRwtpGtLTNqiq~~-----------------F-----------------------------reP~LLV 127 (355)
+|+++|++||++||+||+||||.+.+ | ++||+||
T Consensus 81 ~a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vi 160 (225)
T TIGR01011 81 EAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLF 160 (225)
T ss_pred HHHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEE
Confidence 99999999999999999999997631 1 5899999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhc
Q 018448 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191 (355)
Q Consensus 128 VtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rG 191 (355)
|+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|+++++
T Consensus 161 i~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~~ 224 (225)
T TIGR01011 161 VIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ 224 (225)
T ss_pred EeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 9
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=1.2e-53 Score=398.58 Aligned_cols=177 Identities=26% Similarity=0.363 Sum_probs=168.0
Q ss_pred CCcHHHHHHHHHcCceeccC--CCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHH
Q 018448 13 SQKEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQR 89 (355)
Q Consensus 13 ~~ke~dv~kLLaAgvHLG~~--n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qr 89 (355)
.|...++++||++|+|+||+ +|||+|++||||+| ||+|||||.+|+++|++|+++|..+ +++++||||+||++.++
T Consensus 4 ~~~~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r-~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~ 82 (230)
T CHL00067 4 RMWNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAER-NGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAAD 82 (230)
T ss_pred cccccCHHHHHhcCeEeccCcCcCCCchhhhhhccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHH
Confidence 34567899999999999986 69999999999999 6999999999999999999999997 89999999999999999
Q ss_pred HHHHHHHHcCCccccCCccCCcccCccccc---------------------------------------c-------cCC
Q 018448 90 AVLKFAKYTHAHAIAGRHTPGTFTNQMQTS---------------------------------------F-------NEP 123 (355)
Q Consensus 90 aVlKfA~~tGa~~IagRwtpGtLTNqiq~~---------------------------------------F-------reP 123 (355)
+|+++|+++|++||++||+||+||||.+.+ | ++|
T Consensus 83 ~v~~~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P 162 (230)
T CHL00067 83 LVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLP 162 (230)
T ss_pred HHHHHHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCC
Confidence 999999999999999999999999998731 1 689
Q ss_pred ceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhh
Q 018448 124 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (355)
Q Consensus 124 ~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~r 190 (355)
++|||+||..|++||+||.++||||||||||||||+.|||||||||||.+||.+++++|+++|++++
T Consensus 163 ~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 163 DIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred CEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 10
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=1.1e-53 Score=387.70 Aligned_cols=166 Identities=43% Similarity=0.666 Sum_probs=159.6
Q ss_pred HHHcCceeccCC--CCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHc
Q 018448 22 MLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (355)
Q Consensus 22 LLaAgvHLG~~n--~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~t 98 (355)
|+++|+|+||+. |||+|++||||+| ||+|||||++|+++|++|+++|..+ .++++|||||||++.+++|+++|+++
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r-~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~ 79 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGER-NGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT 79 (193)
T ss_pred CCccceEeCCCcCCCCccchhheeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 589999999865 7999999999999 6999999999999999999999998 77999999999999999999999999
Q ss_pred CCccccCCccCCcccCcccc------------------------cccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 018448 99 HAHAIAGRHTPGTFTNQMQT------------------------SFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 99 Ga~~IagRwtpGtLTNqiq~------------------------~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDT 154 (355)
|++|+++||+||+||||.+. .+++||+|||+||..|++||+||+++||||||+|||
T Consensus 80 ~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 80 GSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred CCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 99999999999999999876 468999999999999999999999999999999999
Q ss_pred CCCCCCceEEecCCCCCcchHHHHHHHHHHHHHH
Q 018448 155 DSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 188 (355)
Q Consensus 155 Ds~p~~VDypIP~NndS~~SI~Li~~lLareVL~ 188 (355)
|++|++|||||||||||.+|+.+++++|+++|++
T Consensus 160 n~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 160 NCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred CCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999974
No 11
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=3e-50 Score=370.11 Aligned_cols=168 Identities=39% Similarity=0.579 Sum_probs=157.1
Q ss_pred HHHcCceeccC--CCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHc
Q 018448 22 MLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (355)
Q Consensus 22 LLaAgvHLG~~--n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~t 98 (355)
||++|+|+||+ +|||+|++||||+| +|+|||||++|+++|++|+++|..+ +++++|+||+|+++.+++|+++|+++
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r-~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~ 79 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKR-NGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRT 79 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEE-TTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHH
T ss_pred CcccceecCCCcCCCCCCcccceeccc-CceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHh
Confidence 78999999997 59999999999999 6999999999999999999999998 89999999999999999999999999
Q ss_pred CCccccCCccCCcccCccccc---------------------------------c-------cCCceEEEeCCCCCchhH
Q 018448 99 HAHAIAGRHTPGTFTNQMQTS---------------------------------F-------NEPRLLILTDPRTDHQPI 138 (355)
Q Consensus 99 Ga~~IagRwtpGtLTNqiq~~---------------------------------F-------reP~LLVVtDP~~D~qaI 138 (355)
|++|+++||+||+||||.+.+ | +.||+|||+||..|++||
T Consensus 80 ~~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i 159 (211)
T PF00318_consen 80 GSFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFKLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAI 159 (211)
T ss_dssp TCEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHH
T ss_pred CCCccCceecCcccCcHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhH
Confidence 999999999999999999652 1 469999999999999999
Q ss_pred HHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhh
Q 018448 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (355)
Q Consensus 139 ~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~r 190 (355)
+||.++||||||||||||||+.|||||||||||..||.+++++|+++|+++|
T Consensus 160 ~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 160 REANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp HHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999875
No 12
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-46 Score=350.36 Aligned_cols=182 Identities=26% Similarity=0.372 Sum_probs=169.1
Q ss_pred CccCCCcH-HHHHHHHHcCceeccCC--CCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccC
Q 018448 9 PRQLSQKE-ADIQMMLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSAR 84 (355)
Q Consensus 9 ~~~l~~ke-~dv~kLLaAgvHLG~~n--~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr 84 (355)
.|..+..+ .+|++|+.||+||||+. ||+.|++||||+|. |||||||+||..+|++|+++++.+ ..+|.||||+||
T Consensus 39 ~d~fn~~~~~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~-Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn 117 (251)
T KOG0832|consen 39 KDYFNVPELISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRL-GIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTN 117 (251)
T ss_pred hhhhcchhhccHHHHHhccccccccccccCcccchhhccccc-CcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34555544 79999999999999854 99999999999996 999999999999999999999998 778999999999
Q ss_pred chhHHHHHHHHHHcCCccccCCccCCcccCccccc---------------c---cCCceEEEeCCCCCchhHHHhhhcCC
Q 018448 85 PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS---------------F---NEPRLLILTDPRTDHQPIKEAALGNI 146 (355)
Q Consensus 85 ~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~---------------F---reP~LLVVtDP~~D~qaI~EAs~lnI 146 (355)
+...+.|.+.|.++|+++++.+|.||+|||+.+.. | ..||++||+||.++|.||.||++++|
T Consensus 118 ~~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~I 197 (251)
T KOG0832|consen 118 NGFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAI 197 (251)
T ss_pred cchHHHHHHHHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCC
Confidence 99999999999999999999999999999997641 1 46899999999999999999999999
Q ss_pred CEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhc
Q 018448 147 PTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191 (355)
Q Consensus 147 PtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rG 191 (355)
|||||+||||+|++||||||+||||..|+.+++.++.++|.+++.
T Consensus 198 PTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~ 242 (251)
T KOG0832|consen 198 PTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQ 242 (251)
T ss_pred CeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999864
No 13
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.86 E-value=0.13 Score=50.43 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCc-------ccC----c--------
Q 018448 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-------FTN----Q-------- 115 (355)
Q Consensus 56 ~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGt-------LTN----q-------- 115 (355)
.+..+.|..++..+.. ++++++|.++|....+.-++...+.....+.+...-..|. +.+ -
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~ 117 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGA 117 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHH
Confidence 3445667777777765 6899999999998776655554333332222211111111 111 0
Q ss_pred --c-cccccCCceEEEeCCCCCc----hhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCC---C--------CCcchH
Q 018448 116 --M-QTSFNEPRLLILTDPRTDH----QPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN---N--------KGKHSI 175 (355)
Q Consensus 116 --i-q~~FreP~LLVVtDP~~D~----qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~N---n--------dS~~SI 175 (355)
. ...+.+-|++|++...-+. .+++.|...|.+||+|++. ++++. ..|+.|... . ++.-|.
T Consensus 118 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~taq 197 (296)
T PRK12570 118 QDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVLTGSTRLKSGTAQ 197 (296)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEeeCcCCccccccchHHHHHHH
Confidence 0 0124677998888755443 5789999999999999865 44443 578887421 1 245578
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 176 ~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
.+++.+|+..+....|+..+.. |+|+
T Consensus 198 k~vLd~L~t~~~~r~Gk~~~n~----mvd~ 223 (296)
T PRK12570 198 KMVLNMLSTASMIRLGKSYQNL----MVDV 223 (296)
T ss_pred HHHHHHHHHHHHHhcchhhcCe----EEEe
Confidence 8899999999999899886654 8886
No 14
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=95.10 E-value=0.21 Score=47.85 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCcc-----ccCCccCCcc------cCcc-------
Q 018448 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-----IAGRHTPGTF------TNQM------- 116 (355)
Q Consensus 56 ~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~-----IagRwtpGtL------TNqi------- 116 (355)
.+..+.|..|+..++. ++++++|.++|....+.=+++..++...-+- +.+-..+|.- .|..
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~ 108 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGA 108 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHH
Confidence 3445667777777765 5899999999999877666654444332111 1111122211 1111
Q ss_pred ----cccccCCceEEEeCCCC----CchhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCC-----------CCcchH
Q 018448 117 ----QTSFNEPRLLILTDPRT----DHQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN-----------KGKHSI 175 (355)
Q Consensus 117 ----q~~FreP~LLVVtDP~~----D~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nn-----------dS~~SI 175 (355)
...+.+-|++|++...- -..+++.|++.|+|||+|++. ++++. ..|+.|-... ++.-+.
T Consensus 109 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E~~~~st~~~s~~aq 188 (257)
T cd05007 109 ADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQ 188 (257)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCccccCccccccHHHH
Confidence 11246778888876432 245789999999999999854 45543 3677775432 234567
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 176 ~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
.+++.+|...+....|++-.. .|+|+
T Consensus 189 k~vLn~L~t~~~~~~g~v~~n----~mvd~ 214 (257)
T cd05007 189 KLALNMLSTAVMIRLGKVYGN----LMVDV 214 (257)
T ss_pred HHHHHHHHHHHHHHcchHHHH----HHHHh
Confidence 888999999888888887544 47776
No 15
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.05 E-value=0.51 Score=46.28 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcc-----------cC--------
Q 018448 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF-----------TN-------- 114 (355)
Q Consensus 55 L~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtL-----------TN-------- 114 (355)
+.+..+.+..++..++. +.++++|.++|....+.-+++.+++...-+-+....+.|.+ .|
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~ 120 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELG 120 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHH
Confidence 45566777777777765 58999999999998877666655543322211111111111 11
Q ss_pred --cc-cccccCCceEEEeCCCC----CchhHHHhhhcCCCEEEEec-CCCCCC-CceEEecCCC-----------CCcch
Q 018448 115 --QM-QTSFNEPRLLILTDPRT----DHQPIKEAALGNIPTIAFCD-TDSPMR-YVDIGIPANN-----------KGKHS 174 (355)
Q Consensus 115 --qi-q~~FreP~LLVVtDP~~----D~qaI~EAs~lnIPtIALcD-TDs~p~-~VDypIP~Nn-----------dS~~S 174 (355)
+. ...+..-|++|++...- -..+++.|+..|.+||+|++ .++++. ..|++|.... ++..+
T Consensus 121 ~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~ta 200 (299)
T PRK05441 121 AADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKAGTA 200 (299)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCccccccccccchhH
Confidence 00 11256778888886432 24578999999999999996 455543 4788775432 24456
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 175 I~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
..+++.+|+..+....|+.-.. .|+|+
T Consensus 201 qk~iLn~lst~~~~~~gkv~~n----~mvd~ 227 (299)
T PRK05441 201 QKLVLNMISTGVMIRLGKVYGN----LMVDV 227 (299)
T ss_pred HHHHHHHHHHHHHHHccHHHHH----HHHHh
Confidence 7888999999988888875332 36665
No 16
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=93.80 E-value=0.86 Score=44.73 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHH---HHHcCCcc--ccCCccCCc---ccCcc---------
Q 018448 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKF---AKYTHAHA--IAGRHTPGT---FTNQM--------- 116 (355)
Q Consensus 55 L~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKf---A~~tGa~~--IagRwtpGt---LTNqi--------- 116 (355)
+.+..+.+..|+..+.. ++++++|.++|....+.=+++.. .-+.|..+ +.+-..+|- +++..
T Consensus 36 v~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~ 115 (291)
T TIGR00274 36 IESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAG 115 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHH
Confidence 44556677778877764 68999999999886654334332 22334332 112222331 11110
Q ss_pred -----cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CCceEEecCCC-----------CCcch
Q 018448 117 -----QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN-----------KGKHS 174 (355)
Q Consensus 117 -----q~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypIP~Nn-----------dS~~S 174 (355)
...+.+=|++|++...-+ ..+++.|++.|+|||+|+.. ++++ ++.|+.|.... ++.-+
T Consensus 116 ~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~a 195 (291)
T TIGR00274 116 ANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTA 195 (291)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHH
Confidence 112567788888865433 35778999999999999753 4443 35777775421 34556
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 175 I~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
..+++.+|+..+....|..-... |+|+
T Consensus 196 qk~iLd~L~t~~~~~~gk~~~n~----mvd~ 222 (291)
T TIGR00274 196 QKMVLNMLSTASMIKLGKVYENL----MVDV 222 (291)
T ss_pred HHHHHHHHHHHHHHhcchhhcCe----EEee
Confidence 67788999998888888876554 7886
No 17
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=91.89 E-value=5.5 Score=36.49 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHH---------cCCccccCCccCC-cccC------------
Q 018448 58 TWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKY---------THAHAIAGRHTPG-TFTN------------ 114 (355)
Q Consensus 58 TwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~---------tGa~~IagRwtpG-tLTN------------ 114 (355)
-.+.|.+|++.|.. +.++++|.++|...-+.-+ ..+|.. .|-..+.. ... .++.
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A-~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~ 102 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDA-MHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFS 102 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHH
Confidence 34678889999875 5899999999887544322 233322 11111110 000 1110
Q ss_pred -cccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCC
Q 018448 115 -QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN 169 (355)
Q Consensus 115 -qiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nn 169 (355)
+.....++-|++|++...-+ ..+++.|+..|+|||+|+.. ++++. +.|+.|..+.
T Consensus 103 ~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 103 RYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred HHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 11122467799888874422 35778889999999999975 55553 4677776665
No 18
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=91.38 E-value=6.2 Score=34.85 Aligned_cols=89 Identities=19% Similarity=0.092 Sum_probs=48.8
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC-CC---chhHHHhhhcCCC
Q 018448 72 IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TD---HQPIKEAALGNIP 147 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~D---~qaI~EAs~lnIP 147 (355)
+.+.++|.++|.+..+. ....++.+....-.......... .....+-|++|+++-. .. ..+++.|+..|+|
T Consensus 27 l~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ 101 (179)
T TIGR03127 27 IIKAKRIFVAGAGRSGL-VGKAFAMRLMHLGFNVYVVGETT----TPSIKKGDLLIAISGSGETESLVTVAKKAKEIGAT 101 (179)
T ss_pred HHhCCEEEEEecCHHHH-HHHHHHHHHHhCCCeEEEeCCcc----cCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCe
Confidence 34557899988875332 22233333211111111122221 2345677888888743 22 3466778999999
Q ss_pred EEEEecC-CCCCC-CceEEe
Q 018448 148 TIAFCDT-DSPMR-YVDIGI 165 (355)
Q Consensus 148 tIALcDT-Ds~p~-~VDypI 165 (355)
||+|+|. +|++. +.|+.+
T Consensus 102 ii~IT~~~~s~la~~ad~~l 121 (179)
T TIGR03127 102 VAAITTNPESTLGKLADVVV 121 (179)
T ss_pred EEEEECCCCCchHHhCCEEE
Confidence 9999986 44443 355544
No 19
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=91.33 E-value=7.1 Score=34.63 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=57.3
Q ss_pred eHHHHHHHHHHH-H-HHHHHhhCCCcEEEEccCchhHHHHHHHHHH---cCCccccCCccCCcccCcccccccCCceEEE
Q 018448 54 NLGKTWEKLQMA-A-RVIVAIENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128 (355)
Q Consensus 54 NL~kTwekL~lA-a-~~I~aIen~g~ILfVsTr~~~qraVlKfA~~---tGa~~IagRwtpGtLTNqiq~~FreP~LLVV 128 (355)
||.+|.+.+... . +++..+.+.++|.++|.+.... ....++.+ .|-..+. .+... .....+-|++|+
T Consensus 10 ~l~~t~~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~---~~~~~----~~~~~~~D~vI~ 81 (179)
T cd05005 10 EIENVADKIDEEELDKLISAILNAKRIFVYGAGRSGL-VAKAFAMRLMHLGLNVYV---VGETT----TPAIGPGDLLIA 81 (179)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCeEEEEecChhHH-HHHHHHHHHHhCCCeEEE---eCCCC----CCCCCCCCEEEE
Confidence 455665543322 1 1222345557899998875321 22222222 2322111 11111 123456788888
Q ss_pred eCCCCC----chhHHHhhhcCCCEEEEecCC-CCCC-CceE--EecCCC
Q 018448 129 TDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-YVDI--GIPANN 169 (355)
Q Consensus 129 tDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p~-~VDy--pIP~Nn 169 (355)
+..... ..+++.|+..|+|+|+|+|+. +++. +.|+ .+|++.
T Consensus 82 iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 82 ISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred EcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 874422 347788899999999999964 4442 3455 445543
No 20
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=91.19 E-value=5.2 Score=38.75 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhCC-CcEEEEccCchhHHHHHHHHHH---cCCccccCCccCCcccCcccccccCCceEEEe
Q 018448 55 LGKTWEKLQMAARVIVA-IENP-GDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILT 129 (355)
Q Consensus 55 L~kTwekL~lAa~~I~a-Ien~-g~ILfVsTr~~~qraVlKfA~~---tGa~~IagRwtpGtLTNqiq~~FreP~LLVVt 129 (355)
+++|...|..-..-++. +.+. ++|.++|....+. +...++.+ .|-..+.- .+..+.........+-|++|++
T Consensus 25 ~~~t~~~~~~~l~~~~~~l~~a~~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~d~~I~i 101 (326)
T PRK10892 25 LAELDQYINQDFTLACEKMFWCKGKVVVMGMGKSGH-IGRKMAATFASTGTPSFFV--HPGEAAHGDLGMVTPQDVVIAI 101 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHhHH-HHHHHHHHHhcCCceeEEe--ChHHhhccccccCCCCCEEEEE
Confidence 45565555553333443 2343 6888888874332 22333332 33322110 1111111112335667888888
Q ss_pred CCCC----CchhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCC---------C---CCcchHHHHHHHHHHHHHHhhc
Q 018448 130 DPRT----DHQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN---------N---KGKHSIGCLFWLLARMVLQMRG 191 (355)
Q Consensus 130 DP~~----D~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~N---------n---dS~~SI~Li~~lLareVL~~rG 191 (355)
...- =..+++.|+..|+|||+|++. +|++. .-|+.|..- . +|.-+..++...|...+++.+|
T Consensus 102 S~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g 181 (326)
T PRK10892 102 SNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARG 181 (326)
T ss_pred eCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 7432 245789999999999999986 45554 456655221 1 1222233444555556666666
Q ss_pred C
Q 018448 192 T 192 (355)
Q Consensus 192 t 192 (355)
.
T Consensus 182 ~ 182 (326)
T PRK10892 182 F 182 (326)
T ss_pred C
Confidence 4
No 21
>PRK13938 phosphoheptose isomerase; Provisional
Probab=90.43 E-value=9.6 Score=35.39 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCC--------ccCC-ccc-------------
Q 018448 57 KTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGR--------HTPG-TFT------------- 113 (355)
Q Consensus 57 kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagR--------wtpG-tLT------------- 113 (355)
...+.+..++..+.. +.++++|.++|....+.-+ ..|+.+.-.++.-+| ..++ .+|
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A-~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~ 104 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADA-QHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFA 104 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHH
Confidence 445566667776654 6899999999887655443 345544321111111 0111 111
Q ss_pred CcccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CCceEEecCC
Q 018448 114 NQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPAN 168 (355)
Q Consensus 114 Nqiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypIP~N 168 (355)
.+.....++-|++|++...-+ .++++.|+..|+|||+|++. ++++ ++.|+.|...
T Consensus 105 ~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~ 165 (196)
T PRK13938 105 RALEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVP 165 (196)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeC
Confidence 222334678899999875533 35778999999999999974 4444 3466655433
No 22
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=90.19 E-value=1.8 Score=37.23 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCc---------cc----------c
Q 018448 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------MQ----------T 118 (355)
Q Consensus 59 wekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNq---------iq----------~ 118 (355)
.+.|..|+..++. ++++++|.++++..-+.-+..-+....|-..+.+...|....+. .. .
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLA 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHH
Confidence 6778899999986 59999999999986654444333333333333333333222211 10 0
Q ss_pred --cccCCceEEEeCCCCC-c---hhHHHhhhcCCCEEEEe
Q 018448 119 --SFNEPRLLILTDPRTD-H---QPIKEAALGNIPTIAFC 152 (355)
Q Consensus 119 --~FreP~LLVVtDP~~D-~---qaI~EAs~lnIPtIALc 152 (355)
.++.-|+||++...-+ . .++++|+..|.+||+|.
T Consensus 98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 1578899988875433 2 36799999999999985
No 23
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=90.15 E-value=13 Score=32.95 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhH---HHHHHHHHHcCCc--cccCCccCC------cccCc----------c
Q 018448 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQ---RAVLKFAKYTHAH--AIAGRHTPG------TFTNQ----------M 116 (355)
Q Consensus 59 wekL~lAa~~I~a-Ien~g~ILfVsTr~~~q---raVlKfA~~tGa~--~IagRwtpG------tLTNq----------i 116 (355)
.+.+.+|+..|.. +.+.++|.++|....+. ....++..+.+-. -+...+..+ ...|- .
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQV 95 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHH
Confidence 6778889988876 57778899998874332 2222333221100 011111111 01110 1
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCC
Q 018448 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~N 168 (355)
....++-|++|++...-+ ..+++.|+..|+|||+|++. ++++. +.|+.|...
T Consensus 96 ~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 96 EALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 123577899888875433 35778999999999999986 45543 466655443
No 24
>PRK13936 phosphoheptose isomerase; Provisional
Probab=90.08 E-value=2.6 Score=38.67 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchh---HHHHHHHHHHcCCccccCCccCCccc--------------Cc------
Q 018448 60 EKLQMAARVIVA-IENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQ------ 115 (355)
Q Consensus 60 ekL~lAa~~I~a-Ien~g~ILfVsTr~~~---qraVlKfA~~tGa~~IagRwtpGtLT--------------Nq------ 115 (355)
+.|..|+..++. +.+.++|.+.|....+ +....++..+.|. ..+|.-. |-
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~------~r~g~~~~~~~~~~~~~~~~~~d~~~~~~ 100 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFER------ERPSLPAIALTTDTSTLTAIANDYSYNEV 100 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCC------CCccceeEecCCcHHHHHHHhhcCCHHHH
Confidence 556677877776 4888999998876543 3333344333221 1122211 11
Q ss_pred ----ccccccCCceEEEeCCCCCc----hhHHHhhhcCCCEEEEecC-CCCCCC----ceEEecCCCC
Q 018448 116 ----MQTSFNEPRLLILTDPRTDH----QPIKEAALGNIPTIAFCDT-DSPMRY----VDIGIPANNK 170 (355)
Q Consensus 116 ----iq~~FreP~LLVVtDP~~D~----qaI~EAs~lnIPtIALcDT-Ds~p~~----VDypIP~Nnd 170 (355)
.....++=|++|++...-+. .+++.|+..|+|||+|++. ++++.- .|+.|....+
T Consensus 101 ~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~ 168 (197)
T PRK13936 101 FSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAE 168 (197)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCC
Confidence 01123567888887744332 3678899999999999984 454443 4555544443
No 25
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=89.82 E-value=4.5 Score=37.58 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchh---HHHHHHHHH-----HcCCccccC---CccCCcccC----------cc
Q 018448 59 WEKLQMAARVIVA-IENPGDIIVQSARPYG---QRAVLKFAK-----YTHAHAIAG---RHTPGTFTN----------QM 116 (355)
Q Consensus 59 wekL~lAa~~I~a-Ien~g~ILfVsTr~~~---qraVlKfA~-----~tGa~~Iag---RwtpGtLTN----------qi 116 (355)
-+.|..|+..|.. +.+.++|+++|....+ +....+|.. +.|-..++- .-+-...+| |.
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 3678888888876 4899999999877543 333333321 222221110 000001111 11
Q ss_pred cccccCCceEEEeCCCCCc----hhHHHhhhcCCCEEEEec-CCCCCCCc----eEEecCCCCCc
Q 018448 117 QTSFNEPRLLILTDPRTDH----QPIKEAALGNIPTIAFCD-TDSPMRYV----DIGIPANNKGK 172 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D~----qaI~EAs~lnIPtIALcD-TDs~p~~V----DypIP~NndS~ 172 (355)
+...++-|++|++...-+. .+++.|+..|+|||+|+. .++++... |+.|--+.++.
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~ 168 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRS 168 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCch
Confidence 2235788999988755433 467888899999999996 44555442 55555544444
No 26
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=88.87 E-value=4.7 Score=42.75 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=67.9
Q ss_pred hhCCCcEEEEccCch--hHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 018448 72 IENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (355)
Q Consensus 72 Ien~g~ILfVsTr~~--~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~ln 145 (355)
+.+..+|.|+++... .......+..+.+...+. -..+..+.. ......+.+++|++...-+ ..+++.|+..|
T Consensus 286 l~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~g 363 (604)
T PRK00331 286 LKKIDRIYIVACGTSYHAGLVAKYLIESLAGIPVE-VEIASEFRY-RDPVLSPKTLVIAISQSGETADTLAALRLAKELG 363 (604)
T ss_pred HhcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCEE-EEehhhhhc-cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 455677899888643 122333343443322221 112233332 1223456788888864433 45778889999
Q ss_pred CCEEEEecC-CCCC-CCceEEecCCCC---------CcchHHHHHHHHHHHHHHhhcCCC
Q 018448 146 IPTIAFCDT-DSPM-RYVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIR 194 (355)
Q Consensus 146 IPtIALcDT-Ds~p-~~VDypIP~Nnd---------S~~SI~Li~~lLareVL~~rGtis 194 (355)
+|||+|++. +|++ +..|+.|+.+.. +..|.-+++.+|+-.+...+|.++
T Consensus 364 a~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~~~~~~g~~~ 423 (604)
T PRK00331 364 AKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGTLS 423 (604)
T ss_pred CCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999985 6655 357777776532 222333445556655555566554
No 27
>PRK02947 hypothetical protein; Provisional
Probab=88.34 E-value=9.1 Score=36.40 Aligned_cols=96 Identities=18% Similarity=0.069 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCC-ccCCcc--------c---Cc--------cc
Q 018448 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGR-HTPGTF--------T---NQ--------MQ 117 (355)
Q Consensus 59 wekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagR-wtpGtL--------T---Nq--------iq 117 (355)
-+.|..|+..|+. +.+.++|.++|.+..+.- ...|..+.|......+ ..+..+ | +. ..
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~v-A~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHIL-AEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDR 101 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH-HHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHH
Confidence 3568889989876 588899999998864432 2333333321100000 111100 0 10 12
Q ss_pred ccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC
Q 018448 118 TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 118 ~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD 155 (355)
....+-|++|++...-. -++++.|+..|+|||+|++..
T Consensus 102 ~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 23567789888875533 236789999999999999874
No 28
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.84 E-value=2.3 Score=34.60 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=51.4
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCc--ccccccCCceEEEeCCCCCchh----HHHhhhcCCCEEE
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--MQTSFNEPRLLILTDPRTDHQP----IKEAALGNIPTIA 150 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNq--iq~~FreP~LLVVtDP~~D~qa----I~EAs~lnIPtIA 150 (355)
+|++||.+..-.+-.++..++.|...+...=-+|.-.+. +....+.+|+||++--..+|.+ -++|.+.|||++-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 489999977777778888888998765430012322332 3445688999988876666664 4677888999874
Q ss_pred E
Q 018448 151 F 151 (355)
Q Consensus 151 L 151 (355)
.
T Consensus 81 ~ 81 (97)
T PF10087_consen 81 S 81 (97)
T ss_pred E
Confidence 4
No 29
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=87.35 E-value=4.2 Score=38.32 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=52.3
Q ss_pred hhCCCcEEEEccCchhHHH---HHHHHHHcCCccccCCccCCcccCcc-cccccCCceEEEeCCC-CC---chhHHHhhh
Q 018448 72 IENPGDIIVQSARPYGQRA---VLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPR-TD---HQPIKEAAL 143 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~qra---VlKfA~~tGa~~IagRwtpGtLTNqi-q~~FreP~LLVVtDP~-~D---~qaI~EAs~ 143 (355)
|.+.++|.|+|.+....-+ ..++. +.|-..+. ......... .....+-|++|++.-. .. ..+++.|+.
T Consensus 125 i~~a~~I~i~G~G~S~~~a~~~~~~l~-~~g~~~~~---~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~ 200 (284)
T PRK11302 125 LTQAKKISFFGLGASAAVAHDAQNKFF-RFNVPVVY---FDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARE 200 (284)
T ss_pred HHcCCeEEEEEcchHHHHHHHHHHHHH-hcCCceEe---cCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4455789999887543222 22222 23432221 111111001 1234677888888743 22 346788999
Q ss_pred cCCCEEEEecCCCCCC-CceEEecC
Q 018448 144 GNIPTIAFCDTDSPMR-YVDIGIPA 167 (355)
Q Consensus 144 lnIPtIALcDTDs~p~-~VDypIP~ 167 (355)
.|+|||+|++.++++. +.|+.|..
T Consensus 201 ~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 201 NGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred cCCeEEEECCCCChhHHhCCEEEec
Confidence 9999999999777765 35776654
No 30
>PRK15482 transcriptional regulator MurR; Provisional
Probab=85.77 E-value=5.9 Score=37.77 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=34.9
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CCceEEecCCC
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN 169 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p-~~VDypIP~Nn 169 (355)
..+-|++|++.-... ..+++.|+..|+|||+|+|.. +++ .+.|+.|.+..
T Consensus 180 ~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 180 LKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 456688888874322 356788899999999999974 444 35777766543
No 31
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=85.61 E-value=8.1 Score=32.32 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=35.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCCC
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNK 170 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nnd 170 (355)
..+-|++|++...-+ ..+++.|+..|+|+|+|++. ++++. ..|+.|.....
T Consensus 45 ~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 45 LTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 456688888864433 45778889999999999986 44543 46777666544
No 32
>PRK13937 phosphoheptose isomerase; Provisional
Probab=85.46 E-value=15 Score=33.38 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHH---HHHHHHcCCccccCCccCCcccCc--------------------
Q 018448 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAV---LKFAKYTHAHAIAGRHTPGTFTNQ-------------------- 115 (355)
Q Consensus 60 ekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraV---lKfA~~tGa~~IagRwtpGtLTNq-------------------- 115 (355)
+.|..|+.-++. +.+.++|.++|....+.-|. ..+..+.+- ..+|.....
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~------~r~g~~~~~~~~d~~~~~~~~~d~~~~~~ 95 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKK------ERPALPAIALTTDTSALTAIGNDYGFERV 95 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccC------CCCCcceEeccCcHHHHHHHhccCCHHHH
Confidence 567777777765 58999999999986554322 222211110 112221111
Q ss_pred ----ccccccCCceEEEeCCC-CC---chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecC
Q 018448 116 ----MQTSFNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (355)
Q Consensus 116 ----iq~~FreP~LLVVtDP~-~D---~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~ 167 (355)
.....++-|++|++.-. .. ..+++.|+..|+|||+|++. ++++. ..|+.|..
T Consensus 96 ~~~~~~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 96 FSRQVEALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHhhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 11123677888888633 22 34778899999999999985 55553 45555543
No 33
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=85.19 E-value=5.3 Score=37.74 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=36.3
Q ss_pred ccCCceEEEeCCCCC-c---hhHHHhhhcCCCEEEEecC-CCCCC-CceEEecC
Q 018448 120 FNEPRLLILTDPRTD-H---QPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (355)
Q Consensus 120 FreP~LLVVtDP~~D-~---qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~ 167 (355)
..+-|++|++.-..+ . .+++.|+..|+|||+|+|. ++++. +.|+.|.+
T Consensus 173 ~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 173 LSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 578899998874433 2 5789999999999999997 44443 56888764
No 34
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=85.19 E-value=11 Score=30.52 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=35.0
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCC-CC-CceEEecCCCC
Q 018448 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSP-MR-YVDIGIPANNK 170 (355)
Q Consensus 121 reP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTDs~-p~-~VDypIP~Nnd 170 (355)
.+-+++|+++...+ .++++.|+..|+++|+|.+...+ +. +.|+.|++...
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 56688888886544 33678899999999999986443 32 46666665443
No 35
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=84.47 E-value=11 Score=40.47 Aligned_cols=49 Identities=8% Similarity=0.244 Sum_probs=36.4
Q ss_pred ccCCceEEEeCCC-CC---chhHHHhhhcCCCEEEEecCCCCCC-CceEEecCC
Q 018448 120 FNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGIPAN 168 (355)
Q Consensus 120 FreP~LLVVtDP~-~D---~qaI~EAs~lnIPtIALcDTDs~p~-~VDypIP~N 168 (355)
..+-|++|++.-. .. ..+++.|+..|+|||+|+|.+|++. +.|+.|+..
T Consensus 513 l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 513 LGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEcC
Confidence 4566887777643 33 3567888899999999999887763 578888764
No 36
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=84.23 E-value=27 Score=30.54 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=35.3
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCC
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN 169 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nn 169 (355)
.++-|++|++...-+ ..+++.|+..|+|+|+|++. ++++. +.|+.|...+
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 367788888874432 35678889999999999984 56653 4666665544
No 37
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=83.70 E-value=12 Score=34.93 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=46.5
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CCceEEecCCCC---------Ccch---HHHHHHH
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK---------GKHS---IGCLFWL 181 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypIP~Nnd---------S~~S---I~Li~~l 181 (355)
+.+-|++|++....+ -.+++.|+..|+|||+|++. ++++ .+.|+.|..... ...| .-++.-+
T Consensus 45 ~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~ 124 (268)
T TIGR00393 45 VEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDA 124 (268)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHH
Confidence 566788888875422 35779999999999999986 4454 246776654211 1122 2233344
Q ss_pred HHHHHHHhhcCC
Q 018448 182 LARMVLQMRGTI 193 (355)
Q Consensus 182 LareVL~~rGti 193 (355)
|...+...+|..
T Consensus 125 l~~~~~~~~~~~ 136 (268)
T TIGR00393 125 LAVALMRARNFS 136 (268)
T ss_pred HHHHHHHHHCcC
Confidence 666777667664
No 38
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=83.21 E-value=9 Score=31.41 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=32.0
Q ss_pred ccCCceEEEeCCC-CC---chhHHHhhhcCCCEEEEecCCC-CC-CCceEEe
Q 018448 120 FNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDTDS-PM-RYVDIGI 165 (355)
Q Consensus 120 FreP~LLVVtDP~-~D---~qaI~EAs~lnIPtIALcDTDs-~p-~~VDypI 165 (355)
..+-|++|++... .. ..++++|+..|+|+|+|+|... ++ ++.|+.|
T Consensus 44 ~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l 95 (126)
T cd05008 44 LDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVL 95 (126)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEE
Confidence 5677888877643 22 3568899999999999999744 43 2355554
No 39
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=81.62 E-value=6.3 Score=32.41 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=34.9
Q ss_pred cccCCceEEEeCCC-CC---chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecC
Q 018448 119 SFNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (355)
Q Consensus 119 ~FreP~LLVVtDP~-~D---~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~ 167 (355)
...+-|++|++.-. .. ..+++.|+..|+|||+|++. ++++. +.|+.|.+
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 34667888888633 32 45789999999999999985 55553 46766654
No 40
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=80.62 E-value=24 Score=34.90 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchh--HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC---
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--- 134 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~--qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D--- 134 (355)
+.+..++..+.+ ++-.+|.|+++.... -...+.+..+.+...+. -..+.-|.+.......+-+++|.+...-+
T Consensus 30 ~~l~~~~~~l~~-~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~-~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e 107 (340)
T PRK11382 30 PLVHAIVEEMVK-RDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY-AISGWEFCDNTPYRLDDRCAVIGVSDYGKTEE 107 (340)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE-EeccHHHHhcCCcCCCCCCEEEEEcCCCCCHH
Confidence 334444444432 234678887775432 12222222332221121 23444444333333445577777764322
Q ss_pred -chhHHHhhhcCCCEEEEecC-CCCC-CCceEEecCCC
Q 018448 135 -HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN 169 (355)
Q Consensus 135 -~qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypIP~Nn 169 (355)
..+++.|+..|.|||+|++. +|++ +..|+.|+.+-
T Consensus 108 ~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~a 145 (340)
T PRK11382 108 VIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQA 145 (340)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCC
Confidence 45778889999999999986 6666 47899998884
No 41
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=80.14 E-value=37 Score=33.52 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=51.3
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCCCCc-------eEEecCCCCCcchHHHHHHHHHHHHHHh
Q 018448 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRYV-------DIGIPANNKGKHSIGCLFWLLARMVLQM 189 (355)
Q Consensus 121 reP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTDs~p~~V-------DypIP~NndS~~SI~Li~~lLareVL~~ 189 (355)
.+-+++|++...-+ ..+++.|...|++||+|++ ++++.-. -+.||++.-+..|...++..+. .++..
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~-~~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~-~~l~~ 154 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS-GGKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLL-KILEK 154 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC-CchHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHH-HHHHH
Confidence 56678888874433 3567899999999999996 4555433 6888988877777777766554 56666
Q ss_pred hcCCC
Q 018448 190 RGTIR 194 (355)
Q Consensus 190 rGtis 194 (355)
.|-++
T Consensus 155 ~Gl~~ 159 (337)
T PRK08674 155 LGLIP 159 (337)
T ss_pred cCCCc
Confidence 67654
No 42
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=79.75 E-value=22 Score=33.83 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=33.3
Q ss_pred ccCCceEEEeCCC-CC---chhHHHhhhcCCCEEEEecCCCCC--CCceEEecC
Q 018448 120 FNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPA 167 (355)
Q Consensus 120 FreP~LLVVtDP~-~D---~qaI~EAs~lnIPtIALcDTDs~p--~~VDypIP~ 167 (355)
..+-|++|++.-. .. ..+++.|+..|+|||+|+|...++ .+.|+.|..
T Consensus 185 ~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 185 LQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 4677888777643 22 346678889999999999986554 245666544
No 43
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=76.98 E-value=43 Score=28.03 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=69.0
Q ss_pred hCCCcEEEEccCc---hhHHHHHHHHHHcC---CccccCCccCCcccCcccccccCCceEEEeCCC-C----CchhHHHh
Q 018448 73 ENPGDIIVQSARP---YGQRAVLKFAKYTH---AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-T----DHQPIKEA 141 (355)
Q Consensus 73 en~g~ILfVsTr~---~~qraVlKfA~~tG---a~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~----D~qaI~EA 141 (355)
.+-.+|.++|+.. .++..-+|+.+..+ ..+..+.|..|.+.+ ..+-+++|++.+. . ...+++.+
T Consensus 11 ~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~-----~~~~~~vi~is~~g~t~~~~~~~~~~~ 85 (153)
T cd05009 11 KEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIAL-----VDEGTPVIFLAPEDRLEEKLESLIKEV 85 (153)
T ss_pred hccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhh-----ccCCCcEEEEecCChhHHHHHHHHHHH
Confidence 4456788888864 34556666666543 223344565555443 2344566666643 2 23477888
Q ss_pred hhcCCCEEEEecCCCCCCCceEEe--cCCCC--CcchHHHHHHHHHHHHHHhhcCC
Q 018448 142 ALGNIPTIAFCDTDSPMRYVDIGI--PANNK--GKHSIGCLFWLLARMVLQMRGTI 193 (355)
Q Consensus 142 s~lnIPtIALcDTDs~p~~VDypI--P~Nnd--S~~SI~Li~~lLareVL~~rGti 193 (355)
.+.|.|+|+|.+.+.+....|+.| |.-.+ +.-..-+.+++|+..+-..+|..
T Consensus 86 ~~~~~~vi~it~~~~s~~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a~~~g~~ 141 (153)
T cd05009 86 KARGAKVIVITDDGDAKDLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGID 141 (153)
T ss_pred HHcCCEEEEEecCCcccccCCeEEECCCCchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999987754333445544 43211 12234445688888888888765
No 44
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=76.11 E-value=26 Score=34.50 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=54.2
Q ss_pred hCCCcEEEEcc---Cchh---HHHHHHHHHHcCCccccCCccCCcccCccccc------ccCCceEEEeCCCCC--chhH
Q 018448 73 ENPGDIIVQSA---RPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS------FNEPRLLILTDPRTD--HQPI 138 (355)
Q Consensus 73 en~g~ILfVsT---r~~~---qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~------FreP~LLVVtDP~~D--~qaI 138 (355)
....+|-||.. .++. .+.+++.|+..|...+-. .+..-....|.. -+.+|.|||.-...+ ...+
T Consensus 21 ~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~--~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l 98 (336)
T PRK15408 21 QAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYD--GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPAL 98 (336)
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHH
Confidence 56667766643 2443 455778888888654421 222222222221 267999998744333 5789
Q ss_pred HHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 139 KEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 139 ~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
++|...|||+|.+ |++.+....++-|
T Consensus 99 ~~a~~~gIpVV~~-d~~~~~~~~~~~V 124 (336)
T PRK15408 99 KRAMQRGVKVLTW-DSDTKPECRSYYI 124 (336)
T ss_pred HHHHHCCCeEEEe-CCCCCCccceEEE
Confidence 9999999999985 6665444444444
No 45
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=74.55 E-value=34 Score=34.26 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcc-----------------
Q 018448 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----------------- 116 (355)
Q Consensus 55 L~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi----------------- 116 (355)
+++.+..+..|...+.. ++++|+.++++....|+=.|+..++-..-+-+...-+=|..--=.
T Consensus 39 V~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~~g 118 (298)
T COG2103 39 VEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEELG 118 (298)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhcCccccHHHH
Confidence 55677778888888875 689999999999988988888777744333221111111110000
Q ss_pred -----cccccCCceEEEeCCC----CCchhHHHhhhcCCCEEEE-ecCCCCCC-CceEEecC-----------CCCCcch
Q 018448 117 -----QTSFNEPRLLILTDPR----TDHQPIKEAALGNIPTIAF-CDTDSPMR-YVDIGIPA-----------NNKGKHS 174 (355)
Q Consensus 117 -----q~~FreP~LLVVtDP~----~D~qaI~EAs~lnIPtIAL-cDTDs~p~-~VDypIP~-----------NndS~~S 174 (355)
...+..=|+||=+-.. .=.-++++|+++|..||+| ||-+|++. ..||+|-- -=|+-.+
T Consensus 119 ~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEvltGSTRlKaGTA 198 (298)
T COG2103 119 EADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKAGTA 198 (298)
T ss_pred HHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccccccccccccchH
Confidence 0124566777765411 2245889999999999999 57788765 47888742 1245566
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 175 I~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
-.++++||+..+--.-|+.-.. .|+|+
T Consensus 199 QKlvLNMlST~~Mi~lGKvy~N----lMVDv 225 (298)
T COG2103 199 QKLVLNMLSTGVMIKLGKVYGN----LMVDV 225 (298)
T ss_pred HHHHHHHHHHHHHHHhcccccc----eEEEe
Confidence 7899999999888877887544 48887
No 46
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=71.30 E-value=8.3 Score=35.01 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=32.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.||+.+...+...++++...|||+|.+ |++.+-....+..+
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~ 107 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQPYCYVGS 107 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCCCCCEEEE
Confidence 3679888887666667789999999999966 77655333444444
No 47
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=69.71 E-value=20 Score=38.20 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=64.6
Q ss_pred hCCCcEEEEccCch--hHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhcCC
Q 018448 73 ENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNI 146 (355)
Q Consensus 73 en~g~ILfVsTr~~--~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnI 146 (355)
.+..+|.|+++... .......+..+.+...+. .-.+..+.. ......+.+++|++...-+ ..+++.|+..|+
T Consensus 289 ~~~~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~-~~~~~~~~~-~~~~~~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga 366 (607)
T TIGR01135 289 KNVDRIQIVACGTSYHAGLVAKYLIERLAGIPVE-VEIASEFRY-RKPVVDKDTLVIAISQSGETADTLAALRLAKELGA 366 (607)
T ss_pred ccCCEEEEEEeechHHHHHHHHHHHHHhcCCCEE-EecHHHHhh-cCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCC
Confidence 44567888888643 122223333332221111 011122221 2223456788888864433 457788888999
Q ss_pred CEEEEecC-CCCCC-CceEEecCCCC---------CcchHHHHHHHHHHHHHHhhcCCC
Q 018448 147 PTIAFCDT-DSPMR-YVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIR 194 (355)
Q Consensus 147 PtIALcDT-Ds~p~-~VDypIP~Nnd---------S~~SI~Li~~lLareVL~~rGtis 194 (355)
|||+|.+. +|++. ..|+.|+.+.. |..|.-+++.+|+-.+...+|.++
T Consensus 367 ~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~l~~~~g~~~ 425 (607)
T TIGR01135 367 KTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLS 425 (607)
T ss_pred cEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999985 66663 56776665431 222233445566666666666544
No 48
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=69.10 E-value=12 Score=34.79 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=42.3
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEe----CCC---CCchhHHHhhhcCCCEE
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPR---TDHQPIKEAALGNIPTI 149 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVt----DP~---~D~qaI~EAs~lnIPtI 149 (355)
+|+++........-+..+....|.....-++.-+.+.. .......+|.||++ +|. ...+.++++...++|++
T Consensus 2 ~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLAD-EAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred eEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHH-HHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 35666665554444555666667655432221111100 00112457888887 343 23467888888899999
Q ss_pred EEe
Q 018448 150 AFC 152 (355)
Q Consensus 150 ALc 152 (355)
|+|
T Consensus 81 GIC 83 (214)
T PRK07765 81 GVC 83 (214)
T ss_pred EEc
Confidence 998
No 49
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=68.76 E-value=23 Score=34.14 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=33.6
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCCC-ceEEecC
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMRY-VDIGIPA 167 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~~-VDypIP~ 167 (355)
...=|++|++.-.-. -.+++.|+..|.|||+|.|+ +||+.- .|+.+..
T Consensus 175 ~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 175 LTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 455678888874433 34568888999999999999 777753 4544443
No 50
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.07 E-value=12 Score=34.68 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=37.0
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEe--CCCCCchhHHHhhhcCCCEE
Q 018448 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT--DPRTDHQPIKEAALGNIPTI 149 (355)
Q Consensus 73 en~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVt--DP~~D~qaI~EAs~lnIPtI 149 (355)
+.+++|.+|+.+.. ..+.+.++.-+...+.+.+.++. +...+++|+. |+..+.+...+|...|||+-
T Consensus 30 ~~ga~VtVvsp~~~--~~l~~l~~~~~i~~~~~~~~~~d--------l~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 30 KAGAQLRVIAEELE--SELTLLAEQGGITWLARCFDADI--------LEGAFLVIAATDDEELNRRVAHAARARGVPVN 98 (205)
T ss_pred HCCCEEEEEcCCCC--HHHHHHHHcCCEEEEeCCCCHHH--------hCCcEEEEECCCCHHHHHHHHHHHHHcCCEEE
Confidence 56677777765532 23344444333333333333322 2334565554 33366788999999999884
No 51
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=67.79 E-value=23 Score=28.82 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=51.5
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcCCcc---ccCCccCCcccCcccccccCCceEEEeCCC-CC---chhHHHh
Q 018448 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAHA---IAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TD---HQPIKEA 141 (355)
Q Consensus 72 Ien~g~ILfVsTr~~---~qraVlKfA~~tGa~~---IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~D---~qaI~EA 141 (355)
|.+.++|.++|+... ++.+..++.+-.+... -.+-+..+.+. ...+=+++|++... .. .+.+++|
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~vi~is~sg~~~~~~~~~~~a 76 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLE-----NLDPDDLVIIISYSGETRELIELLRFA 76 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGG-----GCSTTEEEEEEESSSTTHHHHHHHHHH
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcc-----cccccceeEeeeccccchhhhhhhHHH
Confidence 456678999988753 4455555533222211 11112222222 22333667777633 33 3467889
Q ss_pred hhcCCCEEEEecCCC-CCC-Cce--EEecCCCCC
Q 018448 142 ALGNIPTIAFCDTDS-PMR-YVD--IGIPANNKG 171 (355)
Q Consensus 142 s~lnIPtIALcDTDs-~p~-~VD--ypIP~NndS 171 (355)
+..|+|+|+|++... ++. +.| +.+|.++..
T Consensus 77 k~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 77 KERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp HHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred HhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 999999999997644 332 244 445555444
No 52
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=67.64 E-value=28 Score=33.53 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=33.8
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEe
Q 018448 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGI 165 (355)
Q Consensus 119 ~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypI 165 (355)
...+-|++|++.-.-+ -++++.|+..|+|||+|.+. +|++. +-|+.+
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l 138 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVL 138 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEE
Confidence 3467789888875433 35778999999999999985 55554 355555
No 53
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=66.91 E-value=1.1e+02 Score=28.76 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCc-cc-Cccccc-----------c-
Q 018448 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FT-NQMQTS-----------F- 120 (355)
Q Consensus 56 ~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGt-LT-Nqiq~~-----------F- 120 (355)
+.-.+.+..|+..|+. +.++++||..+...-...|..-.|+-+|-+.-..+=+|+. || |..... |
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFs 100 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFS 100 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHH
Confidence 4556778888888876 5999999999987766667665566666665555556654 23 433221 1
Q ss_pred -------cCCceEEEeCCCCCc----hhHHHhhhcCCCEEEEecCCC----CCCCceEEecCCC
Q 018448 121 -------NEPRLLILTDPRTDH----QPIKEAALGNIPTIAFCDTDS----PMRYVDIGIPANN 169 (355)
Q Consensus 121 -------reP~LLVVtDP~~D~----qaI~EAs~lnIPtIALcDTDs----~p~~VDypIP~Nn 169 (355)
++=|+|+-+.+.-+. .|++.|...++-||+|.-.|- .+.-+.+-||..+
T Consensus 101 RqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~ 164 (176)
T COG0279 101 RQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTD 164 (176)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCc
Confidence 677999888877554 478899999999999986554 3444667778763
No 54
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=65.27 E-value=11 Score=34.23 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHHHHh-hCCCcEEEEccC-c-h---hHHHHHHHHHHcCCccccC-CccCCcccCcccccccCCceEEEeCCCCCc
Q 018448 63 QMAARVIVAI-ENPGDIIVQSAR-P-Y---GQRAVLKFAKYTHAHAIAG-RHTPGTFTNQMQTSFNEPRLLILTDPRTDH 135 (355)
Q Consensus 63 ~lAa~~I~aI-en~g~ILfVsTr-~-~---~qraVlKfA~~tGa~~Iag-RwtpGtLTNqiq~~FreP~LLVVtDP~~D~ 135 (355)
..+++.+... ...++|.+++.. . . ..+.+++.++..|...+.. .+....+.+..+.-...|+.|++.+-..-.
T Consensus 118 ~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~~d~~a~ 197 (281)
T cd06325 118 ETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDNTVA 197 (281)
T ss_pred HHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEcCchhHH
Confidence 3444555443 355788887542 2 1 2245556666667653321 111111222222222357888887543222
Q ss_pred ---hhHHHhhh-cCCCEEEEecCC
Q 018448 136 ---QPIKEAAL-GNIPTIAFCDTD 155 (355)
Q Consensus 136 ---qaI~EAs~-lnIPtIALcDTD 155 (355)
+++++... .+||+|++-|+.
T Consensus 198 ~~~~~~~~~~~~~~ipvig~d~~~ 221 (281)
T cd06325 198 SAMEAVVKVANEAKIPVIASDDDM 221 (281)
T ss_pred hHHHHHHHHHHHcCCCEEEcCHHH
Confidence 33444332 479999998874
No 55
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.44 E-value=26 Score=31.46 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=27.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~ 157 (355)
+.+|.||+..+..+...++++...|||+|.+ |++.+
T Consensus 59 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 94 (270)
T cd06294 59 KRVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPED 94 (270)
T ss_pred cCcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCCC
Confidence 3578899887666667789999999999987 55543
No 56
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=61.69 E-value=46 Score=36.00 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHH-HhhCCCcEEEEccCc----hhHHHHHHHHHHcCC----ccccCCccCCcccCcc--cc-cccCCceE
Q 018448 59 WEKLQMAARVIV-AIENPGDIIVQSARP----YGQRAVLKFAKYTHA----HAIAGRHTPGTFTNQM--QT-SFNEPRLL 126 (355)
Q Consensus 59 wekL~lAa~~I~-aIen~g~ILfVsTr~----~~qraVlKfA~~tGa----~~IagRwtpGtLTNqi--q~-~FreP~LL 126 (355)
+..+.+|+..|. +|+++.+|++.+--- ++.-++.++-++.|. +||-.|+..|==-|.. .. .-..++||
T Consensus 52 l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~Li 131 (575)
T PRK11070 52 LSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLI 131 (575)
T ss_pred hhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEE
Confidence 455667777665 578889999987653 233445567777776 4677776665322221 11 12467999
Q ss_pred EEeCCC-CCchhHHHhhhcCCCEEEEecC
Q 018448 127 ILTDPR-TDHQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 127 VVtDP~-~D~qaI~EAs~lnIPtIALcDT 154 (355)
|.+|.. .++.+|..|...||.||-. |-
T Consensus 132 ItvD~Gi~~~e~i~~a~~~gidvIVt-DH 159 (575)
T PRK11070 132 VTVDNGISSHAGVAHAHALGIPVLVT-DH 159 (575)
T ss_pred EEEcCCcCCHHHHHHHHHCCCCEEEE-CC
Confidence 999966 6788999999999998753 53
No 57
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.36 E-value=17 Score=32.43 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.+|+.....+...++++...|||+|.+ |++.+...+++..+
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~ 97 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGPGVDAVCS 97 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCCCCCEEEE
Confidence 4578888876555566788999999999987 66654445666444
No 58
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=60.43 E-value=32 Score=30.14 Aligned_cols=59 Identities=20% Similarity=0.061 Sum_probs=36.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHH
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 183 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLa 183 (355)
+.+|.+|+.....+...++++...|||+|++ |++.+-..+.+.-+ +...+..++...|.
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l~ 112 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLV-DRPLDGLGVDSVGI---DNRAGAYLAVEHLI 112 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccccCCCCCEEee---ccHHHHHHHHHHHH
Confidence 5789888887665555589999999999997 55443233444322 23344444444443
No 59
>PRK13566 anthranilate synthase; Provisional
Probab=58.72 E-value=67 Score=35.76 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CC-----CCchhHHHhhhcCCC
Q 018448 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR-----TDHQPIKEAALGNIP 147 (355)
Q Consensus 74 n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~-----~D~qaI~EAs~lnIP 147 (355)
++.+|++|.........+.++.+..|+....-++--. ........||.||++. |. .....|+++...++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~----~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA----EEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC----hhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCc
Confidence 3458999988876777788888889987654443210 0011124789988863 32 245788888889999
Q ss_pred EEEEe
Q 018448 148 TIAFC 152 (355)
Q Consensus 148 tIALc 152 (355)
+.|+|
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 99998
No 60
>PRK05670 anthranilate synthase component II; Provisional
Probab=57.31 E-value=21 Score=32.11 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=43.0
Q ss_pred EEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC----CCC---CchhHHHhhhcCCCEEE
Q 018448 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRT---DHQPIKEAALGNIPTIA 150 (355)
Q Consensus 78 ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD----P~~---D~qaI~EAs~lnIPtIA 150 (355)
||+|.........+.++..+.|.....-++..... ....-..||.||++. |.. ....|++ ..-++|++|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~---~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~-~~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITL---EEIEALNPDAIVLSPGPGTPAEAGISLELIRE-FAGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCH---HHHHhCCCCEEEEcCCCCChHHcchHHHHHHH-hcCCCCEEE
Confidence 78888877777777777787887765544432111 111112489999973 321 1234443 456799999
Q ss_pred Ee
Q 018448 151 FC 152 (355)
Q Consensus 151 Lc 152 (355)
+|
T Consensus 78 IC 79 (189)
T PRK05670 78 VC 79 (189)
T ss_pred EC
Confidence 97
No 61
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=56.42 E-value=24 Score=31.51 Aligned_cols=44 Identities=9% Similarity=-0.049 Sum_probs=29.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+.+|.+|+.....+...+.++...+||+|.+ |++.+...+++..
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~ 101 (268)
T cd06271 58 GLVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTELGDPHPWVD 101 (268)
T ss_pred CCCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCCCCCCCeEe
Confidence 3568888876554555678888899999976 6655443455544
No 62
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=56.09 E-value=32 Score=34.62 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccc-cCCccCCcccCccc----c--------cccCCceEE
Q 018448 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAI-AGRHTPGTFTNQMQ----T--------SFNEPRLLI 127 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~I-agRwtpGtLTNqiq----~--------~FreP~LLV 127 (355)
+...-..+|..+++.|.=.+|.+|.++ .+.+....-|-.|+ -|+.- +++....- . .-..||++|
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~yg~~y~~iG~~g-~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~i 88 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDLYGIDYIVIGKHG-DSLYGKLLESIERQYKLLKLIKKFKPDVAI 88 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHHcCCCeEEEcCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 455666777888666655566677665 35667778887664 44433 33322211 0 014799988
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 018448 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (355)
Q Consensus 128 VtDP~~D~qaI~EAs~lnIPtIALcDTDs~p 158 (355)
-... ..+.+=|.-+|||+|.++||+-..
T Consensus 89 s~~s---~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 89 SFGS---PEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred ecCc---HHHHHHHHHhCCCeEEEecCchhh
Confidence 4432 346677889999999999997543
No 63
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=55.75 E-value=20 Score=32.24 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=49.9
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCccccc----------------------------------ccC
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS----------------------------------FNE 122 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~----------------------------------Fre 122 (355)
+|.++|..|-|+..+ |-+-||.....+.| ||+=+....-. ...
T Consensus 2 ~ialvG~PNvGKStL--fN~Ltg~~~~v~n~-pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 2 RIALVGNPNVGKSTL--FNALTGAKQKVGNW-PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp EEEEEESTTSSHHHH--HHHHHTTSEEEEES-TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHH--HHHHHCCCceecCC-CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 478899999998766 55667777666666 56544433210 157
Q ss_pred CceEEEe-CCC---CCchhHHHhhhcCCCEEEEecC
Q 018448 123 PRLLILT-DPR---TDHQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 123 P~LLVVt-DP~---~D~qaI~EAs~lnIPtIALcDT 154 (355)
||++|++ |.. .+.....+...+|+|+|.+.|-
T Consensus 79 ~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~ 114 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNK 114 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEET
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 8886654 644 4455667888899999988653
No 64
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=55.02 E-value=23 Score=27.22 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCc
Q 018448 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ 115 (355)
Q Consensus 63 ~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNq 115 (355)
.++.+.+..++.+..+.++.+.+...+-|.++|+.+|..++.-.=.+|.+.-+
T Consensus 14 l~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~~~~~~~~~~ 66 (69)
T cd03420 14 LKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLETEKGKVKAV 66 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 44555566665666677888888898999999999999886433345655433
No 65
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=54.33 E-value=3.7 Score=33.68 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCceEEEe--CCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecC
Q 018448 122 EPRLLILT--DPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (355)
Q Consensus 122 eP~LLVVt--DP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~ 167 (355)
.-+++|+. |+..+.+..++|...+||+ |.-.+|++-|+-+|+
T Consensus 60 ~~~lV~~at~d~~~n~~i~~~a~~~~i~v----n~~D~p~~~dF~~Pa 103 (103)
T PF13241_consen 60 GADLVFAATDDPELNEAIYADARARGILV----NVVDDPELCDFIFPA 103 (103)
T ss_dssp TESEEEE-SS-HHHHHHHHHHHHHTTSEE----EETT-CCCCSEE--E
T ss_pred hheEEEecCCCHHHHHHHHHHHhhCCEEE----EECCCcCCCeEEcCC
Confidence 34555554 3456677778888899987 333346677777773
No 66
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=53.28 E-value=1.2e+02 Score=32.82 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CCceEEecCC
Q 018448 122 EPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPAN 168 (355)
Q Consensus 122 eP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p-~~VDypIP~N 168 (355)
+-+++|++...-+ -.+++.|+..|+|||+|++.. |++ +..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 4577777764432 457888899999999999864 554 4677877754
No 67
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=53.19 E-value=41 Score=30.22 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=26.4
Q ss_pred cCCceEEEeC--CCCCchhHHHhhhcCCCEEEEecCC
Q 018448 121 NEPRLLILTD--PRTDHQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 121 reP~LLVVtD--P~~D~qaI~EAs~lnIPtIALcDTD 155 (355)
+.||.||+.- +..-.+.++++..-|||+|.+ |++
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~-d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV-DSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEE-SST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEE-ecc
Confidence 5689888774 434457899999999999985 666
No 68
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=53.05 E-value=1.6e+02 Score=32.47 Aligned_cols=92 Identities=8% Similarity=0.054 Sum_probs=52.1
Q ss_pred hhCCCcEEEEccCchh--HHHHHHHHHHc-CCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 018448 72 IENPGDIIVQSARPYG--QRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~--qraVlKfA~~t-Ga~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
+.+..+|.|+++..-. -.....+..+. |.... -..+..|.++.. ....-+++|++...-+ ..+++.|+..
T Consensus 360 l~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~--~~~~sef~~~~~-~~~~~~lvI~ISqSGeT~eti~Al~~Ak~~ 436 (680)
T PLN02981 360 IRRSRRIVFIGCGTSYNAALAARPILEELSGVPVT--MELASDLLDRQG-PIYREDTAVFVSQSGETADTLRALEYAKEN 436 (680)
T ss_pred HhcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEE--EecchHHHhccc-cCCCCCeEEEEeCCcCCHHHHHHHHHHHHC
Confidence 4556778888776432 22233344432 32211 123444444422 2334567777764322 4588889999
Q ss_pred CCCEEEEecC-CCCCC-CceEEec
Q 018448 145 NIPTIAFCDT-DSPMR-YVDIGIP 166 (355)
Q Consensus 145 nIPtIALcDT-Ds~p~-~VDypIP 166 (355)
|.|||+|++. +|++. ..|+.|.
T Consensus 437 Ga~~IaITn~~~S~La~~ad~~i~ 460 (680)
T PLN02981 437 GALCVGITNTVGSAISRGTHCGVH 460 (680)
T ss_pred CCcEEEEECCCCChhHhccCeeEE
Confidence 9999999866 67763 4566555
No 69
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=52.48 E-value=83 Score=29.93 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=24.7
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCC
Q 018448 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (355)
Q Consensus 120 FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~ 160 (355)
+..-|++ |+++. -.+.||...|+|+|.+-+...-...
T Consensus 275 ~~~ad~~-v~~Sg---gi~~Ea~~~g~PvI~~~~~~~~~~~ 311 (363)
T cd03786 275 LKNADLV-LTDSG---GIQEEASFLGVPVLNLRDRTERPET 311 (363)
T ss_pred HHcCcEE-EEcCc---cHHhhhhhcCCCEEeeCCCCccchh
Confidence 3445555 47765 3678999999999998665433333
No 70
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=52.44 E-value=49 Score=29.48 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+..|.||+..+..+...++++...+||+|.+ |++.+...+.+.-
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~v~ 97 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIPELGVDTVT 97 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCCCCCCCEEE
Confidence 4578888877655556689988899999997 5554433445443
No 71
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=50.95 E-value=23 Score=29.40 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=38.2
Q ss_pred cccCCceEEEeCCC-C---CchhHHHhhhcCCCEEEEecCCCCCC-C------ceEEecCCCCCcchH
Q 018448 119 SFNEPRLLILTDPR-T---DHQPIKEAALGNIPTIAFCDTDSPMR-Y------VDIGIPANNKGKHSI 175 (355)
Q Consensus 119 ~FreP~LLVVtDP~-~---D~qaI~EAs~lnIPtIALcDTDs~p~-~------VDypIP~NndS~~SI 175 (355)
...+-|++|++... + -..+++.|+..|+|+|+|++ ++++. . .-+++|.++-++-|.
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~~~~~~~~~~~~~p~~~~~r~s~ 106 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLEMAREHGVPVIIIPKGLQPRAAF 106 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHHHHHHcCCcEEECCCCCCCceeH
Confidence 34567888888744 2 24467888999999999995 44433 2 337778877677663
No 72
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=50.29 E-value=82 Score=30.11 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHh-h---CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC
Q 018448 57 KTWEKLQMAARVIVAI-E---NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (355)
Q Consensus 57 kTwekL~lAa~~I~aI-e---n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~ 132 (355)
|-.+.|..|+..+..- . .+-.++++|..+.- ..+++.++..|.... -+..|.-. ....-+..-|++|...-.
T Consensus 207 Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~-~~~~~~~~~~~~~~~--v~~~g~~~-~~~~~~~~adi~v~pS~~ 282 (374)
T TIGR03088 207 KDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR-GACEQMVRAAGLAHL--VWLPGERD-DVPALMQALDLFVLPSLA 282 (374)
T ss_pred cCHHHHHHHHHHHHHhCcccccceEEEEecCCchH-HHHHHHHHHcCCcce--EEEcCCcC-CHHHHHHhcCEEEecccc
Confidence 4445566666555432 1 13467778865533 446677776665322 24455322 222334566777665422
Q ss_pred -CCchhHHHhhhcCCCEEEEecCCCCCCC
Q 018448 133 -TDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (355)
Q Consensus 133 -~D~qaI~EAs~lnIPtIALcDTDs~p~~ 160 (355)
.=...+-||..+|+|+|+ .|.....+.
T Consensus 283 Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~ 310 (374)
T TIGR03088 283 EGISNTILEAMASGLPVIA-TAVGGNPEL 310 (374)
T ss_pred ccCchHHHHHHHcCCCEEE-cCCCCcHHH
Confidence 224588999999999998 455444443
No 73
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.12 E-value=86 Score=28.42 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=29.2
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCC--CCceEEec
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~p--~~VDypIP 166 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++.+. ..+++...
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~~~~~~~~~v~~ 102 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSINLEAGVVTQVQS 102 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCCCCCcCeEEEEec
Confidence 46888888654433 34678889999999987 554432 33455444
No 74
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=49.70 E-value=1.1e+02 Score=34.25 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=48.2
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CC-----CCchhHHHhhhcCCCE
Q 018448 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR-----TDHQPIKEAALGNIPT 148 (355)
Q Consensus 75 ~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~-----~D~qaI~EAs~lnIPt 148 (355)
+.+|++|.........+.++-+..|.....-++..+ . ....-..||.||+.. |. .....|+++...++|+
T Consensus 516 ~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~---~-~~~~~~~~DgLILsgGPGsp~d~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 516 GRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA---E-AAFDERRPDLVVLSPGPGRPADFDVAGTIDAALARGLPV 591 (717)
T ss_pred CCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC---h-hhhhhcCCCEEEEcCCCCCchhcccHHHHHHHHHCCCCE
Confidence 457999987765566777788888876543333211 0 011124689999862 22 2356788888899999
Q ss_pred EEEe
Q 018448 149 IAFC 152 (355)
Q Consensus 149 IALc 152 (355)
.|||
T Consensus 592 LGIC 595 (717)
T TIGR01815 592 FGVC 595 (717)
T ss_pred EEEC
Confidence 9997
No 75
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=49.30 E-value=61 Score=29.09 Aligned_cols=43 Identities=16% Similarity=-0.077 Sum_probs=29.8
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 122 eP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
..|.+|++.+..+.+.++++...|||+|.+ |+..+...+++..
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~v~ 97 (268)
T cd06273 55 GVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYSPDSPYPCVG 97 (268)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCCCCCCCCEEE
Confidence 568888887766667788888899999987 4443323344543
No 76
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=48.90 E-value=45 Score=30.08 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=22.9
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEec
Q 018448 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 121 reP~LLVVtDP~~------------D~qaI~EAs~lnIPtIALcD 153 (355)
...|.||+..+.. -...|+++...++|+.|+|-
T Consensus 35 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 35 LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICL 79 (198)
T ss_pred ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECH
Confidence 3456666655421 24678888888999999984
No 77
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=48.84 E-value=91 Score=28.02 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=29.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+..|.+|+.....+...++++...|+|+|.+ |++.+-..+.+..
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~ 97 (264)
T cd06274 54 RQVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPSRFPSVV 97 (264)
T ss_pred cCCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCCCCCEEE
Confidence 4568888876654444588888899999887 6655433345543
No 78
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=48.20 E-value=33 Score=25.87 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcc
Q 018448 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF 112 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtL 112 (355)
|.++.+.+..+..+..+.++.+.+...+-|.++|+..|...+.-.=.+|.+
T Consensus 14 ll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~~~~~~ 64 (70)
T PF01206_consen 14 LLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEEEGGEY 64 (70)
T ss_dssp HHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEESSSSE
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 445666666666666777899999999999999999998755432244433
No 79
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=48.03 E-value=1.1e+02 Score=28.06 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=49.3
Q ss_pred CcEEEEccC---chhHHHHHHHHHHcCCccccCCcc------CCcccC---------cccc----cc---cCCceEEEeC
Q 018448 76 GDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHT------PGTFTN---------QMQT----SF---NEPRLLILTD 130 (355)
Q Consensus 76 g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwt------pGtLTN---------qiq~----~F---reP~LLVVtD 130 (355)
.-++++|.. ....+.+.++++++|...++.-.- .|.+.+ .-+. .+ ..-|+|+++.
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG 108 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLG 108 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEEEEeC
Confidence 346667653 467888999999999876654222 233322 2211 13 7889999999
Q ss_pred CCCCc--h---hHHHhhhcCCCEEEEecCC
Q 018448 131 PRTDH--Q---PIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 131 P~~D~--q---aI~EAs~lnIPtIALcDTD 155 (355)
.+... | .+|--+ ++-||+||.--
T Consensus 109 ~~~y~~~~~ls~lk~f~--~~~~i~l~~~y 136 (162)
T TIGR00315 109 IIYYYLSQMLSSLKHFS--HIVTIAIDKYY 136 (162)
T ss_pred CcchHHHHHHHHHHhhc--CcEEEEecCCC
Confidence 77542 2 333323 79999999554
No 80
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=47.47 E-value=43 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=22.3
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCEEEEec
Q 018448 123 PRLLILT--DPRTDHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 123 P~LLVVt--DP~~D~qaI~EAs~lnIPtIALcD 153 (355)
.++||.. |+..|.+.-.+|...++++....|
T Consensus 86 ~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 4566655 466778888889888999876544
No 81
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=46.69 E-value=48 Score=31.49 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCC-ccccCCccCCcccCcccc----cccCCceEEE--eCCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 018448 88 QRAVLKFAKYTHA-HAIAGRHTPGTFTNQMQT----SFNEPRLLIL--TDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (355)
Q Consensus 88 qraVlKfA~~tGa-~~IagRwtpGtLTNqiq~----~FreP~LLVV--tDP~~D~qaI~EAs~lnIPtIALcDTDs~p 158 (355)
.+.+++.|+..|. ..+....-.+....|++. --+.+|.|+| .|+..-..++++|...|||||++ |++.+.
T Consensus 52 ~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~-d~~~~~ 128 (322)
T COG1879 52 RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTV-DSDIPG 128 (322)
T ss_pred HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEE-ecCCCC
Confidence 4556778888886 221111111222222211 1389999999 57777788999999999999988 554443
No 82
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=46.61 E-value=80 Score=28.39 Aligned_cols=43 Identities=28% Similarity=0.307 Sum_probs=28.1
Q ss_pred cCCceEEEeCCC--CCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPR--TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~--~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+.+|.||+..+. .....++++...|||+|.+ |++.+...+.+.
T Consensus 54 ~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~V 98 (273)
T cd06305 54 QKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDSDNPKVNNT 98 (273)
T ss_pred cCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCCCCCcccee
Confidence 367888886543 3356788999999999866 554433334443
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.28 E-value=53 Score=36.30 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=62.7
Q ss_pred eHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC
Q 018448 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (355)
Q Consensus 54 NL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~ 133 (355)
+-.|=...|..|+.-+..-...-+++++|..+.- .-+++.++..|..-.. +| .|... ....-++.-|++|+....+
T Consensus 527 ~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~-~~L~~l~~~lgL~~~V-~f-lG~~~-dv~~ll~aaDv~VlpS~~E 602 (694)
T PRK15179 527 DDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLL-ESVREFAQRLGMGERI-LF-TGLSR-RVGYWLTQFNAFLLLSRFE 602 (694)
T ss_pred CccCCHHHHHHHHHHHHHHCcCeEEEEEccCcch-HHHHHHHHHcCCCCcE-EE-cCCcc-hHHHHHHhcCEEEeccccc
Confidence 3344445566666544432223567788876543 3456677776643111 23 33322 2333355668877765332
Q ss_pred -CchhHHHhhhcCCCEEEEecCCCCCCCc-----eEEecCCCC
Q 018448 134 -DHQPIKEAALGNIPTIAFCDTDSPMRYV-----DIGIPANNK 170 (355)
Q Consensus 134 -D~qaI~EAs~lnIPtIALcDTDs~p~~V-----DypIP~Nnd 170 (355)
=...+-||...|+|||+- |....++.| -+-+|.+|.
T Consensus 603 gfp~vlLEAMA~G~PVVat-~~gG~~EiV~dg~~GlLv~~~d~ 644 (694)
T PRK15179 603 GLPNVLIEAQFSGVPVVTT-LAGGAGEAVQEGVTGLTLPADTV 644 (694)
T ss_pred cchHHHHHHHHcCCeEEEE-CCCChHHHccCCCCEEEeCCCCC
Confidence 256889999999999994 444444433 345666654
No 84
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=45.58 E-value=83 Score=28.16 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=30.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|.||+.....+...++++...|||+|.+ |++.+...+++...
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~~ 98 (265)
T cd06299 54 QRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREITGSPIPFVTS 98 (265)
T ss_pred cCCCEEEEcCCCCChHHHHHHHhCCCCEEEE-ecccCCCCCCEEEE
Confidence 4568888876555556789999999999976 55433333455443
No 85
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=45.11 E-value=88 Score=29.80 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC-CCchh
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TDHQP 137 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~D~qa 137 (355)
.+.|..|+..+..-....++.++|..+.... +.+..+..+..- .-++. | +......-++.-|++|.+.-. .-..+
T Consensus 219 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~-~~~~~~~~~~~~-~v~~~-g-~~~~~~~~~~~ad~~v~~S~~Eg~~~~ 294 (372)
T cd04949 219 LDQLIKAFAKVVKQVPDATLDIYGYGDEEEK-LKELIEELGLED-YVFLK-G-YTRDLDEVYQKAQLSLLTSQSEGFGLS 294 (372)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCchHHH-HHHHHHHcCCcc-eEEEc-C-CCCCHHHHHhhhhEEEecccccccChH
Confidence 4445445444433222346677776654332 344444444321 11233 3 344444456777888777643 23568
Q ss_pred HHHhhhcCCCEEEE
Q 018448 138 IKEAALGNIPTIAF 151 (355)
Q Consensus 138 I~EAs~lnIPtIAL 151 (355)
+.||...|+|+|+.
T Consensus 295 ~lEAma~G~PvI~~ 308 (372)
T cd04949 295 LMEALSHGLPVISY 308 (372)
T ss_pred HHHHHhCCCCEEEe
Confidence 99999999999984
No 86
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=44.17 E-value=68 Score=31.67 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEccCch--------hHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEe
Q 018448 58 TWEKLQMAARVIVAIENPGDIIVQSARPY--------GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT 129 (355)
Q Consensus 58 TwekL~lAa~~I~aIen~g~ILfVsTr~~--------~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVt 129 (355)
=...|..|+..+..-...-.++++|..+. .++.+++.++..+.. -+|+|..-.+....-++.-|++|+.
T Consensus 207 g~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~---v~~~G~~~~~~l~~~~~~aDv~v~p 283 (380)
T PRK15484 207 GILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDR---CIMLGGQPPEKMHNYYPLADLVVVP 283 (380)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCc---EEEeCCCCHHHHHHHHHhCCEEEeC
Confidence 33445566655543212245666775432 233455555555532 1355433122333345667888776
Q ss_pred CCCCC--chhHHHhhhcCCCEEEEecCCCCCCC
Q 018448 130 DPRTD--HQPIKEAALGNIPTIAFCDTDSPMRY 160 (355)
Q Consensus 130 DP~~D--~qaI~EAs~lnIPtIALcDTDs~p~~ 160 (355)
....+ ...+-||...|+|+|+- |.....+.
T Consensus 284 S~~~E~f~~~~lEAma~G~PVI~s-~~gg~~Ei 315 (380)
T PRK15484 284 SQVEEAFCMVAVEAMAAGKPVLAS-TKGGITEF 315 (380)
T ss_pred CCCccccccHHHHHHHcCCCEEEe-CCCCcHhh
Confidence 53323 35788999999999994 44444443
No 87
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=43.79 E-value=64 Score=28.68 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=41.0
Q ss_pred EEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEe----CCCCC--chhHHHhhhcCCCEEEE
Q 018448 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRTD--HQPIKEAALGNIPTIAF 151 (355)
Q Consensus 78 ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVt----DP~~D--~qaI~EAs~lnIPtIAL 151 (355)
||++....+....+.++.++.|.....-++--+ .........+|.||++ ++..+ ...+.++...++|+.|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGI 77 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEI---TLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGV 77 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCC---CHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEE
Confidence 456655544445555666667776554444211 1111123568888886 23222 34566666678999999
Q ss_pred e
Q 018448 152 C 152 (355)
Q Consensus 152 c 152 (355)
|
T Consensus 78 C 78 (184)
T cd01743 78 C 78 (184)
T ss_pred C
Confidence 7
No 88
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=43.58 E-value=35 Score=30.86 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=28.5
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+.+|.||+.....+ ...+.++...|||+|.+ |++.+...+.+..
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~~~~~~~~~v~ 104 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGTVTTPCAYNVN 104 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecCCCCCceeEec
Confidence 36788888764433 35688888999999988 4443323344443
No 89
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=43.30 E-value=1.1e+02 Score=32.32 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCccccCCccCCcccCcc---------------cccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsT---r~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi---------------q~~Fre 122 (355)
.+..++..|.+-+ .-+++++. +......+.+||+++|+..++.----|.+.... .....+
T Consensus 196 ~~~~~~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~ 273 (572)
T PRK06456 196 ALKKAAEILINAE--RPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALE 273 (572)
T ss_pred HHHHHHHHHHhCC--CcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHHHh
Confidence 3555555555433 34666664 345678899999999998765422224442211 112478
Q ss_pred CceEEEeCCCCC
Q 018448 123 PRLLILTDPRTD 134 (355)
Q Consensus 123 P~LLVVtDP~~D 134 (355)
.|+|+++..+-+
T Consensus 274 aDlvl~lG~~~~ 285 (572)
T PRK06456 274 SDAMLVVGARFS 285 (572)
T ss_pred CCEEEEECCCCc
Confidence 999999998743
No 90
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=43.21 E-value=2.3e+02 Score=25.40 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC-CchhH
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQPI 138 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~-D~qaI 138 (355)
+.+..|++.+..-...-.+.++|..+.......+.....+.. ..=+|.|. ......-++.-|++|...-.+ -...+
T Consensus 204 ~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~ 280 (359)
T cd03808 204 DELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLE-GRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVL 280 (359)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCc-ceEEEeec--cccHHHHHHhccEEEecCcccCcchHH
Confidence 344444444433223356777777654433322212222211 11123332 223333456677776654331 24578
Q ss_pred HHhhhcCCCEEEEecCCCCCCC
Q 018448 139 KEAALGNIPTIAFCDTDSPMRY 160 (355)
Q Consensus 139 ~EAs~lnIPtIALcDTDs~p~~ 160 (355)
-||...|+|+|+ .|.....+.
T Consensus 281 ~Ea~~~G~Pvi~-s~~~~~~~~ 301 (359)
T cd03808 281 LEAMAMGRPVIA-TDVPGCREA 301 (359)
T ss_pred HHHHHcCCCEEE-ecCCCchhh
Confidence 999999999998 344433343
No 91
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=42.88 E-value=2.5e+02 Score=30.95 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=52.3
Q ss_pred HhhCCCcEEEEccCchh--HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 018448 71 AIENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 71 aIen~g~ILfVsTr~~~--qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
.+.+..+|.|+++.... -...+.+..+.....+. ...+..|.. ......+-+++|++...-+ -.+++.|+..
T Consensus 350 ~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~-v~~asef~~-~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~ 427 (670)
T PTZ00394 350 AILTSRRILFIACGTSLNSCLAVRPLFEELVPLPIS-VENASDFLD-RRPRIQRDDVCFFVSQSGETADTLMALQLCKEA 427 (670)
T ss_pred HHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEE-Eeccchhhh-hccCCCCCCEEEEEECCcCcHHHHHHHHHHHHC
Confidence 34566778888776432 12222233332221111 112223322 1222345577777764432 3478889999
Q ss_pred CCCEEEEecC-CCCC-CCceEEecCC
Q 018448 145 NIPTIAFCDT-DSPM-RYVDIGIPAN 168 (355)
Q Consensus 145 nIPtIALcDT-Ds~p-~~VDypIP~N 168 (355)
|+|||+|++. +|++ +..|+.|..+
T Consensus 428 Ga~tIaITn~~~S~La~~AD~~l~~~ 453 (670)
T PTZ00394 428 GAMCVGITNVVGSSISRLTHYAIHLN 453 (670)
T ss_pred CCcEEEEECCCCCHHHHhcCeEEEec
Confidence 9999999986 4554 4677777653
No 92
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=42.38 E-value=49 Score=30.85 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=64.2
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCcccc-CCc--cCCcccCcccccccCCceEEEeCCCCCchhH-H
Q 018448 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA-GRH--TPGTFTNQMQTSFNEPRLLILTDPRTDHQPI-K 139 (355)
Q Consensus 65 Aa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~tGa~~Ia-gRw--tpGtLTNqiq~~FreP~LLVVtDP~~D~qaI-~ 139 (355)
|..++... +.+.+|.+||..+. ..+..+|+..|..++. .+. -.|.||-+.. -.+++.....+++ .
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~--~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~--------g~~~~~~~K~~~l~~ 151 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFT--FLVEPIAERLGIDYVVANELEIDDGKLTGRVV--------GPICDGEGKAKALRE 151 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChH--HHHHHHHHHhCCchheeeEEEEeCCEEeceee--------eeecCcchHHHHHHH
Confidence 44555555 67788999998865 6788999999986532 222 1133443322 1234433334455 4
Q ss_pred HhhhcCCC---EEEEecCCCCCC---CceEEecCCCCCc
Q 018448 140 EAALGNIP---TIAFCDTDSPMR---YVDIGIPANNKGK 172 (355)
Q Consensus 140 EAs~lnIP---tIALcDTDs~p~---~VDypIP~NndS~ 172 (355)
=++..|++ ++|.-|+.+|+. .++.+|-.|-|..
T Consensus 152 ~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~~ 190 (212)
T COG0560 152 LAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPKPK 190 (212)
T ss_pred HHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcCHH
Confidence 45667999 999999998875 4899999987743
No 93
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.36 E-value=87 Score=28.17 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=26.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+..+..+...++++...|||+|.+ |.+.
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~-~~~~ 88 (265)
T cd06285 54 RRVDGLILGDARSDDHFLDELTRRGVPFVLV-LRHA 88 (265)
T ss_pred cCCCEEEEecCCCChHHHHHHHHcCCCEEEE-ccCC
Confidence 4578888877666667789999999999766 5544
No 94
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=42.22 E-value=86 Score=29.41 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCc-ccccccCCceEEEeCCC-----
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR----- 132 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNq-iq~~FreP~LLVVtDP~----- 132 (355)
.+.|..|+..+..-...-+++++|..++. +-+++.++..|...- -+|+|. ..+. ...-+..-|++|+....
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~-~~~~~~~~~~~~~~~-v~~~g~-~~~~~l~~~~~~ad~~v~ps~~~~~~~ 279 (367)
T cd05844 203 PLLLLEAFARLARRVPEVRLVIIGDGPLL-AALEALARALGLGGR-VTFLGA-QPHAEVRELMRRARIFLQPSVTAPSGD 279 (367)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCchHH-HHHHHHHHHcCCCCe-EEECCC-CCHHHHHHHHHhCCEEEECcccCCCCC
Confidence 34455555544432233567788876544 346667776554211 134432 2221 22335677877764321
Q ss_pred C--CchhHHHhhhcCCCEEEE
Q 018448 133 T--DHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 133 ~--D~qaI~EAs~lnIPtIAL 151 (355)
. =...+.||...|+|+|+-
T Consensus 280 ~E~~~~~~~EA~a~G~PvI~s 300 (367)
T cd05844 280 AEGLPVVLLEAQASGVPVVAT 300 (367)
T ss_pred ccCCchHHHHHHHcCCCEEEe
Confidence 1 146899999999999973
No 95
>CHL00101 trpG anthranilate synthase component 2
Probab=42.20 E-value=87 Score=28.35 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=38.6
Q ss_pred EEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CCC-----CchhHHHhhhcCCCEEEE
Q 018448 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT-----DHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 78 ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~~-----D~qaI~EAs~lnIPtIAL 151 (355)
||+|....+...-+.+..+..|.....-+.-. .+.....-..||.||++. |.. ....+.++...++|++|+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI 78 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDE---IDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV 78 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCC---CCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE
Confidence 66776665444444445555565432212111 111111224688888886 211 134566666779999999
Q ss_pred e
Q 018448 152 C 152 (355)
Q Consensus 152 c 152 (355)
|
T Consensus 79 C 79 (190)
T CHL00101 79 C 79 (190)
T ss_pred c
Confidence 7
No 96
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=41.68 E-value=1.1e+02 Score=30.28 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCc------------ccccccCCceE
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ------------MQTSFNEPRLL 126 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNq------------iq~~FreP~LL 126 (355)
.+.|..|++.+..-...-.+++++..+.-...+++.++..|-.. .+|++|...+. ...-+..=|++
T Consensus 246 ~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~--~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~ 323 (425)
T PRK05749 246 EELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSY--VRRSQGEPPSADTDVLLGDTMGELGLLYAIADIA 323 (425)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcE--EEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEE
Confidence 34455555544322122355667765543345777777777653 34565544321 11124566776
Q ss_pred EEeCCC--CCchhHHHhhhcCCCEEEE
Q 018448 127 ILTDPR--TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 127 VVtDP~--~D~qaI~EAs~lnIPtIAL 151 (355)
++.... .--+.+.||...|+|+|+-
T Consensus 324 ~v~~S~~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 324 FVGGSLVKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred EECCCcCCCCCCCHHHHHHhCCCEEEC
Confidence 664322 2345689999999999973
No 97
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.54 E-value=52 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcccc
Q 018448 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~Ia 104 (355)
+.++.+.+..+..+..+.++.+.+...+-|.++++..|..++.
T Consensus 13 l~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 13 VLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLE 55 (69)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEE
Confidence 3455556666655666777888888888999999999987654
No 98
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=41.17 E-value=3.4e+02 Score=29.38 Aligned_cols=118 Identities=18% Similarity=0.145 Sum_probs=66.1
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcC--C-ccccCCccCCcccCcccccccCCceEEEeCCCC-----CchhHHH
Q 018448 72 IENPGDIIVQSARPY---GQRAVLKFAKYTH--A-HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-----DHQPIKE 140 (355)
Q Consensus 72 Ien~g~ILfVsTr~~---~qraVlKfA~~tG--a-~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~-----D~qaI~E 140 (355)
+.+-.+|.|+|.... +++.-+|+-+-.. + .|-.+-|..|.+.. +. -.+-+.+|++.+.. ....++|
T Consensus 493 l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~al-i~--~~~~~~VI~i~~~~~~~~~~~~~~~~ 569 (640)
T PTZ00295 493 LKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFAL-ID--KEKNTPVILIILDDEHKELMINAAEQ 569 (640)
T ss_pred HhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHH-hc--CCCCCeEEEEEcCCccHHHHHHHHHH
Confidence 346678888888653 4555556555432 1 23344555553311 10 01224454444332 2467899
Q ss_pred hhhcCCCEEEEecCCCCC-CC--ceEEecCCCCCcch--HHHHHHHHHHHHHHhhcCC
Q 018448 141 AALGNIPTIAFCDTDSPM-RY--VDIGIPANNKGKHS--IGCLFWLLARMVLQMRGTI 193 (355)
Q Consensus 141 As~lnIPtIALcDTDs~p-~~--VDypIP~NndS~~S--I~Li~~lLareVL~~rGti 193 (355)
+...|-++|+|.+.++.+ .. ..+.+|.+ .-... .-..+++|+..+-..||..
T Consensus 570 lk~rga~vi~It~~~~~l~~~ad~~i~ip~~-~~l~p~~~~ip~Qllay~la~~~G~d 626 (640)
T PTZ00295 570 VKARGAYIIVITDDEDLVKDFADEIILIPSN-GPLTALLAVIPLQLLAYEIAILRGIN 626 (640)
T ss_pred HHHcCCEEEEEecCCccccccCCeEEEeCCc-ccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999998765322 22 33456653 21222 2333688999888888864
No 99
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=40.23 E-value=1.2e+02 Score=28.20 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHcCCccccCCccCCcccCccccc---------------------
Q 018448 64 MAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS--------------------- 119 (355)
Q Consensus 64 lAa~~I~aIen~g~ILfVsTr~~---~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~--------------------- 119 (355)
.++.+|..- +..+++||.+-. ..+-+.|+++.-+.+.++ |+++.+|.+.+.
T Consensus 27 v~ammIkkA--krPLlivGp~~~dee~~E~~vKi~ekfnipiva---Ta~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~ 101 (170)
T COG1880 27 VVAMMIKKA--KRPLLIVGPLALDEELLELAVKIIEKFNIPIVA---TASSMGNLIGRGIGSEYINLHAITQYLTDPNWP 101 (170)
T ss_pred HHHHHHHhc--CCceEEecccccCHHHHHHHHHHHHhcCCceEe---cchhhcchhhcccccchhHHHHHHHHhcCCCCC
Confidence 344555443 345889998744 445556777776655554 455555444321
Q ss_pred -c---cCCceEEEeCCCCCc-----hhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 120 -F---NEPRLLILTDPRTDH-----QPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 120 -F---reP~LLVVtDP~~D~-----qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
| --+|++|++.....+ +.++-.+ +|-+|||+-.-++ .-||-.|
T Consensus 102 G~dg~g~yDlviflG~~~yy~sq~Ls~lKhFs--~i~tiaId~~Y~p--nAd~SFp 153 (170)
T COG1880 102 GFDGNGNYDLVIFLGSIYYYLSQVLSGLKHFS--NIKTIAIDRYYQP--NADYSFP 153 (170)
T ss_pred CcCCCCCcceEEEEeccHHHHHHHHHHhhhhh--cceEEEeccccCc--CccccCC
Confidence 1 478999999977553 4667777 9999999987775 3455444
No 100
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.87 E-value=59 Score=29.93 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=29.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.+|+.....+...++++...|||+|.+ |++.+ ..+++.-.
T Consensus 55 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~v~~ 98 (283)
T cd06279 55 ALVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP-PGVPSVGI 98 (283)
T ss_pred cCCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC-CCCCEEee
Confidence 4568888775444446789999999999866 76654 33444433
No 101
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.35 E-value=13 Score=37.48 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=30.5
Q ss_pred ccccCCccCC--cccCcccccccCCceEEEeCCCCCchhHHHhhhcCC
Q 018448 101 HAIAGRHTPG--TFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNI 146 (355)
Q Consensus 101 ~~IagRwtpG--tLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnI 146 (355)
++--|||+.| .-|-....+|++|=+-||+||... .||.+++|
T Consensus 140 HPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rt----lsagkv~i 183 (347)
T KOG1554|consen 140 HPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRT----LSAGKVNI 183 (347)
T ss_pred CCCCCccccCcchhHHHHhhhhcCCeEEEEecCccc----cccCceee
Confidence 4456899999 444444567999999999999765 35566655
No 102
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=39.18 E-value=2.4e+02 Score=27.06 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=59.0
Q ss_pred eeHHHHHHHHHH-----------HHHHHHHh-hCCCcEEEEccCchh--HHHHHHHHHHcCCcccc--CCccCCcccCc-
Q 018448 53 INLGKTWEKLQM-----------AARVIVAI-ENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIA--GRHTPGTFTNQ- 115 (355)
Q Consensus 53 INL~kTwekL~l-----------Aa~~I~aI-en~g~ILfVsTr~~~--qraVlKfA~~tGa~~Ia--gRwtpGtLTNq- 115 (355)
++=.+.|+.... |..+|..+ +++.+|.||++|... ...++.+.+..|..+.. .-.++|.-...
T Consensus 96 ~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~ 175 (237)
T PRK11009 96 LKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQY 175 (237)
T ss_pred cChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCC
Confidence 455566776655 56777777 667788899998633 33444555556652111 11233332211
Q ss_pred -ccccccCCc-eEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCC
Q 018448 116 -MQTSFNEPR-LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (355)
Q Consensus 116 -iq~~FreP~-LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~N 168 (355)
+....++.+ .|++=|...|.++ |...||++|++.-.-.+ ..-|+|-|
T Consensus 176 ~K~~~l~~~~i~I~IGDs~~Di~a---A~~AGi~~I~v~~G~~~---~~~~~~~~ 224 (237)
T PRK11009 176 TKTQWLKKKNIRIFYGDSDNDITA---AREAGARGIRILRAANS---TYKPLPQA 224 (237)
T ss_pred CHHHHHHhcCCeEEEcCCHHHHHH---HHHcCCcEEEEecCCCC---CCCccccc
Confidence 111123334 4455577777655 56678999887654222 22277765
No 103
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=39.02 E-value=3.8e+02 Score=28.67 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=58.9
Q ss_pred ceeeecCCceeeeHHHHHHHHHHHHHHHHHh-h--CCCcEEEEcc-Cc--hhHHHHHHHHHH-cCCccccCCcc----CC
Q 018448 42 VFKRRNDGIYIINLGKTWEKLQMAARVIVAI-E--NPGDIIVQSA-RP--YGQRAVLKFAKY-THAHAIAGRHT----PG 110 (355)
Q Consensus 42 IygrR~dGI~IINL~kTwekL~lAa~~I~aI-e--n~g~ILfVsT-r~--~~qraVlKfA~~-tGa~~IagRwt----pG 110 (355)
-++|++++..-|+.++.++ .++..|..+ + .+..|.++.+ +. ....+..+|+.. .|...+..+.. ++
T Consensus 57 P~~R~~g~~~~isWdeAl~---~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 133 (671)
T TIGR01591 57 PLIREGDKFREVSWDEAIS---YIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPS 133 (671)
T ss_pred CeEcCCCCEEEccHHHHHH---HHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhh
Confidence 3344443455566655543 444445554 2 3456766544 32 234567889886 88765433211 11
Q ss_pred ---------c-ccCcccccccCCceEEEe--CCCCCc----hhHHHhhhcCCCEEEE
Q 018448 111 ---------T-FTNQMQTSFNEPRLLILT--DPRTDH----QPIKEAALGNIPTIAF 151 (355)
Q Consensus 111 ---------t-LTNqiq~~FreP~LLVVt--DP~~D~----qaI~EAs~lnIPtIAL 151 (355)
. ..+.....+..-|+||+. ||...+ +.|++|.+-|.++|.+
T Consensus 134 ~~~~~~~~G~~~~~~~~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvi 190 (671)
T TIGR01591 134 VAGLKQTVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVI 190 (671)
T ss_pred hHHHHHhhCCCCCCCCHHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEE
Confidence 0 001111125667888888 565553 4568898889888887
No 104
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=38.96 E-value=69 Score=30.07 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=25.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p 158 (355)
..||+|| +| .+..+..=|...|||+|.+.|-....
T Consensus 93 ~~pDlVI-sD--~~~~~~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 93 FRPDLVI-SD--FYPLAALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred cCCCEEE-Ec--ChHHHHHHHHhcCCCEEEEEehHHcc
Confidence 4799765 55 23345677888999999998876543
No 105
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=38.88 E-value=45 Score=30.47 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhh-C--CCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCccc--ccccCCceEEEeCCCCCch
Q 018448 62 LQMAARVIVAIE-N--PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--TSFNEPRLLILTDPRTDHQ 136 (355)
Q Consensus 62 L~lAa~~I~aIe-n--~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq--~~FreP~LLVVtDP~~D~q 136 (355)
+..|..+|.++. + +..|++..+-++|.+.+.+.... .+...+.|=-+--... .+...|+++|++...-=..
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~----~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPn 109 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD----RVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPN 109 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG----G-SEEE---SSHHHHHHHHHHH--SEEEEES----HH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC----CeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHH
Confidence 345666667773 2 35677766667787765433211 1222334422111111 1236899999999877778
Q ss_pred hHHHhhhcCCCEEEE
Q 018448 137 PIKEAALGNIPTIAF 151 (355)
Q Consensus 137 aI~EAs~lnIPtIAL 151 (355)
-|++|.+.|||++-+
T Consensus 110 ll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 110 LLREAKRRGIPVVLV 124 (186)
T ss_dssp HHHH-----S-EEEE
T ss_pred HHHHHhhcCCCEEEE
Confidence 999999999999754
No 106
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=38.45 E-value=1e+02 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=25.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+.....+...++++...|||+|.+ |++.
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 88 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHI 88 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccC
Confidence 5688888876544434488999999999988 5544
No 107
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=38.44 E-value=2e+02 Score=30.08 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHH-HhhCCCcEEEEccCc----hhHHHHHHHHHHcCCccccCCccCCcccCcc----cccccCCceEE
Q 018448 57 KTWEKLQMAARVIV-AIENPGDIIVQSARP----YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----QTSFNEPRLLI 127 (355)
Q Consensus 57 kTwekL~lAa~~I~-aIen~g~ILfVsTr~----~~qraVlKfA~~tGa~~IagRwtpGtLTNqi----q~~FreP~LLV 127 (355)
...+.+.+|+..|. ++++..+|++++-.- .+.-.+.++..+.|.. ...++|..|+--. +......++||
T Consensus 17 ~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~--~~~~ip~~~~~~~g~~~~~~~~~~~liI 94 (491)
T COG0608 17 FLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGAD--VDYYIPNRFEEGYGAIRKLKEEGADLII 94 (491)
T ss_pred HHHhhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCc--eEEEeCCCccccchHHHHHHhcCCCEEE
Confidence 45667778888876 478899999998764 2344555677778842 2234444444422 33446678999
Q ss_pred EeCCC-CCchhHHHhhhcCCCEEEE
Q 018448 128 LTDPR-TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 128 VtDP~-~D~qaI~EAs~lnIPtIAL 151 (355)
.+|-. ..+..++.++..|+-||-+
T Consensus 95 tvD~G~~~~~~i~~~~~~g~~vIVt 119 (491)
T COG0608 95 TVDNGSGSLEEIARAKELGIDVIVT 119 (491)
T ss_pred EECCCcccHHHHHHHHhCCCcEEEE
Confidence 99965 5566778888778888754
No 108
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=38.40 E-value=91 Score=28.92 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC-
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~---~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D- 134 (355)
.+.+..|++.+.....+-.+.++|..+. ..+.+.+.++..+... +=+|+|. .+....-+..-|++|+...+.+
T Consensus 200 ~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~ 276 (355)
T cd03819 200 QEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGH--CSDMPAAYALADIVVSASTEPEA 276 (355)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCC--cccHHHHHHhCCEEEecCCCCCC
Confidence 4445555554443323457778887543 2333444555544321 1134443 3333344567788887763222
Q ss_pred -chhHHHhhhcCCCEEEEecCCCCC
Q 018448 135 -HQPIKEAALGNIPTIAFCDTDSPM 158 (355)
Q Consensus 135 -~qaI~EAs~lnIPtIALcDTDs~p 158 (355)
...+.||..+|+|+|+- |.....
T Consensus 277 ~~~~l~EA~a~G~PvI~~-~~~~~~ 300 (355)
T cd03819 277 FGRTAVEAQAMGRPVIAS-DHGGAR 300 (355)
T ss_pred CchHHHHHHhcCCCEEEc-CCCCcH
Confidence 46899999999999974 443333
No 109
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=38.37 E-value=1.7e+02 Score=28.17 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHc-CCccccCCccCCcccCcccccccCCceEEEeCCCCCchh
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQP 137 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~t-Ga~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qa 137 (355)
.+.+..|+..+..-...-.+++++..+...+.+++..+.. |.. .+...|. ....+..=|++|+.. -...
T Consensus 204 ~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~----~~~~~~~aDl~v~~s---G~~~ 273 (380)
T PRK00025 204 LPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLLDGQ----KREAMAAADAALAAS---GTVT 273 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEEccc----HHHHHHhCCEEEECc---cHHH
Confidence 4445555554432211234555554343344455555544 321 1222232 222345557777633 3344
Q ss_pred HHHhhhcCCCEEEEecC
Q 018448 138 IKEAALGNIPTIAFCDT 154 (355)
Q Consensus 138 I~EAs~lnIPtIALcDT 154 (355)
+ ||..+|+|+|.+-..
T Consensus 274 l-Ea~a~G~PvI~~~~~ 289 (380)
T PRK00025 274 L-ELALLKVPMVVGYKV 289 (380)
T ss_pred H-HHHHhCCCEEEEEcc
Confidence 4 999999999998654
No 110
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=38.23 E-value=99 Score=27.74 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=29.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+.+|.+|+.....+...+++....+||+|.+ |++.+ ..+++.
T Consensus 50 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~V 91 (261)
T cd06272 50 NRFDGVIIFGESASDVEYLYKIKLAIPVVSY-GVDYD-LKYPIV 91 (261)
T ss_pred cCcCEEEEeCCCCChHHHHHHHHcCCCEEEE-cccCC-CCCCEE
Confidence 3578888887666666678888889999965 66543 234443
No 111
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=37.82 E-value=1.1e+02 Score=27.59 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=35.6
Q ss_pred EEEEccCchh-HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CC---CC---chhHHHhhhcCCCEE
Q 018448 78 IIVQSARPYG-QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---TD---HQPIKEAALGNIPTI 149 (355)
Q Consensus 78 ILfVsTr~~~-qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~---~D---~qaI~EAs~lnIPtI 149 (355)
||+|.+.... ...+.-+. +.|.....-++...++.. ..-..||.||+.. |. .+ ...+++ ...++|++
T Consensus 2 il~id~~dsf~~nl~~~l~-~~~~~~~v~~~~~~~~~~---~~~~~~~~iilsgGP~~~~~~~~~~~~i~~-~~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFC-ELGTEVMVKRNDELQLTD---IEQLAPSHLVISPGPCTPNEAGISLAVIRH-FADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHH-HCCCcEEEEeCCCCCHHH---HHhcCCCeEEEcCCCCChHhCCCchHHHHH-hcCCCCEE
Confidence 5667665433 33444443 355544333333222211 1112688888875 22 22 234444 45699999
Q ss_pred EEe
Q 018448 150 AFC 152 (355)
Q Consensus 150 ALc 152 (355)
|+|
T Consensus 77 GIC 79 (191)
T PRK06774 77 GVC 79 (191)
T ss_pred EEC
Confidence 997
No 112
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=36.88 E-value=1.8e+02 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.1
Q ss_pred hhHHHhhhcCCCEEEEecCCC
Q 018448 136 QPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 136 qaI~EAs~lnIPtIALcDTDs 156 (355)
+...+|+..|||||||.|--+
T Consensus 166 ~lf~~a~~~gi~tigIGDGGN 186 (291)
T PF14336_consen 166 DLFLAAKEPGIPTIGIGDGGN 186 (291)
T ss_pred HHHHHhhcCCCCEEEECCCch
Confidence 456788889999999998643
No 113
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=36.64 E-value=1.2e+02 Score=29.82 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccC-cccccccCCceEEEeCCCC
Q 018448 55 LGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPRT 133 (355)
Q Consensus 55 L~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTN-qiq~~FreP~LLVVtDP~~ 133 (355)
-+|=.+.|..|+..+..-...-.++++|..+. ...+++.+++.|..-. =+|+ |..++ ....-+..=|++++..-.+
T Consensus 204 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~-v~~~-G~~~~~~~~~~l~~ad~~v~pS~~E 280 (398)
T cd03796 204 YRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK-RILLEEMREKYNLQDR-VELL-GAVPHERVRDVLVQGHIFLNTSLTE 280 (398)
T ss_pred hhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch-HHHHHHHHHHhCCCCe-EEEe-CCCCHHHHHHHHHhCCEEEeCChhh
Confidence 34445556666665544323456777887653 3345566666553210 1233 44443 2333355667777654321
Q ss_pred -CchhHHHhhhcCCCEEEEecCCC
Q 018448 134 -DHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 134 -D~qaI~EAs~lnIPtIALcDTDs 156 (355)
-...+.||...|.|+|+ .|...
T Consensus 281 ~~g~~~~EAma~G~PVI~-s~~gg 303 (398)
T cd03796 281 AFCIAIVEAASCGLLVVS-TRVGG 303 (398)
T ss_pred ccCHHHHHHHHcCCCEEE-CCCCC
Confidence 13588999999999988 34433
No 114
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=36.58 E-value=88 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.641 Sum_probs=20.5
Q ss_pred CCceEEEeC-CC---C---CchhHHHhhhcCCCEEEEe
Q 018448 122 EPRLLILTD-PR---T---DHQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 122 eP~LLVVtD-P~---~---D~qaI~EAs~lnIPtIALc 152 (355)
.||.||++. |. . +...++++ ..++|+.|+|
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC 79 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVC 79 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEEC
Confidence 478888774 31 1 23466666 6699999997
No 115
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=36.43 E-value=15 Score=29.49 Aligned_cols=18 Identities=50% Similarity=0.981 Sum_probs=12.6
Q ss_pred CchhHHHHHhhhhchHHHHHH
Q 018448 307 GTNFILREFCFNHFKPLLLQL 327 (355)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ 327 (355)
---||||+||| .|.|.|.
T Consensus 38 clffilrdfcf---ppmlw~~ 55 (78)
T PF05293_consen 38 CLFFILRDFCF---PPMLWTQ 55 (78)
T ss_pred HHHHHHHHccC---CHHHHHH
Confidence 34589999997 4666543
No 116
>PLN02335 anthranilate synthase
Probab=36.19 E-value=98 Score=29.03 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=41.5
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CC---CCchhHHHhhh--cCC
Q 018448 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---TDHQPIKEAAL--GNI 146 (355)
Q Consensus 73 en~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~---~D~qaI~EAs~--lnI 146 (355)
....+|++|........-+....+..|.....-++-... .....-..|+.||+.. |. ..-..++.... .++
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~---~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~ 92 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT---VEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLV 92 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCC---HHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCC
Confidence 345689998775544444555556667765444442211 1111123588888885 33 11123333333 359
Q ss_pred CEEEEe
Q 018448 147 PTIAFC 152 (355)
Q Consensus 147 PtIALc 152 (355)
|+.|+|
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 999997
No 117
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.15 E-value=76 Score=24.36 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcccc
Q 018448 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (355)
Q Consensus 64 lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~Ia 104 (355)
++.+.+..+..+..+.++.+.+...+-|.++|+..|...+.
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLA 55 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEE
Confidence 34444555555566778888999999999999999988753
No 118
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=35.84 E-value=85 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=16.5
Q ss_pred ccCCceEEEe--CCCCCchhHHHhhhcCCCE
Q 018448 120 FNEPRLLILT--DPRTDHQPIKEAALGNIPT 148 (355)
Q Consensus 120 FreP~LLVVt--DP~~D~qaI~EAs~lnIPt 148 (355)
+...+++|.. |+..|.+.-++| ..++++
T Consensus 68 l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 68 IVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred cCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 3456776665 455565666666 557654
No 119
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=35.66 E-value=1e+02 Score=28.03 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCEEEEe
Q 018448 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 122 eP~LLVVtDP~~D--~qaI~EAs~lnIPtIALc 152 (355)
.+|.+|+.....+ ...++++.+.|||+|.+-
T Consensus 58 ~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~~ 90 (275)
T cd06307 58 RSDGVALVAPDHPQVRAAVARLAAAGVPVVTLV 90 (275)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 5788888765433 256889899999999774
No 120
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.33 E-value=1.2e+02 Score=27.43 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=27.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDI 163 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDy 163 (355)
+.+|.||+..... ...+.++...|||+|. +|.+.+...+.+
T Consensus 57 ~~vdgiii~~~~~-~~~~~~l~~~~ipvV~-~~~~~~~~~~~~ 97 (268)
T cd06277 57 GKVDGIILLGGIS-TEYIKEIKELGIPFVL-VDHYIPNEKADC 97 (268)
T ss_pred CCCCEEEEeCCCC-hHHHHHHhhcCCCEEE-EccCCCCCCCCE
Confidence 4578888876443 3458888888999995 577655444444
No 121
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=35.10 E-value=1.5e+02 Score=27.91 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=25.8
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++.
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~-d~~~ 89 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY-DRLI 89 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe-cCcC
Confidence 46888888754332 56788999999999976 6554
No 122
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.69 E-value=2.4e+02 Score=30.35 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCcccCccc---------------cccc
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFN 121 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq---------------~~Fr 121 (355)
+.|.+|+.+|..-++| ++++|.. ..+.+.+.+||+++|+..++.-.--|.+-..-. ....
T Consensus 188 ~~i~~aa~~L~~AkrP--vIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 188 EAIRKAAELLAEAKRP--VILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhh
Confidence 6788888888765544 6667654 235578999999999987665333344432221 1236
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCC-EEEEecCC----CCCCCceEEecCC
Q 018448 122 EPRLLILTDPRTDHQPIKEAALGNIP-TIAFCDTD----SPMRYVDIGIPAN 168 (355)
Q Consensus 122 eP~LLVVtDP~~D~qaI~EAs~lnIP-tIALcDTD----s~p~~VDypIP~N 168 (355)
+-|+|+++..+-+-..-. -.....| .|-=+|.| .-.-.+|++|-++
T Consensus 266 ~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD 316 (550)
T COG0028 266 EADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316 (550)
T ss_pred cCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEecc
Confidence 899999999775522111 1111222 14444555 2223488888875
No 123
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=34.54 E-value=1.7e+02 Score=28.64 Aligned_cols=101 Identities=9% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCc------------hhHHHHHHHHHHcCCccccCCccCCcccC-cccccccCC
Q 018448 57 KTWEKLQMAARVIVAIENPGDIIVQSARP------------YGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEP 123 (355)
Q Consensus 57 kTwekL~lAa~~I~aIen~g~ILfVsTr~------------~~qraVlKfA~~tGa~~IagRwtpGtLTN-qiq~~FreP 123 (355)
|=++.|.+|+..+..-...-+++++|... +-++.+.+.+...+...| .|+ |.... ....-+..-
T Consensus 225 Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V--~f~-G~v~~~~~~~~l~~a 301 (396)
T cd03818 225 RGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRV--HFL-GRVPYDQYLALLQVS 301 (396)
T ss_pred cCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceE--EEe-CCCCHHHHHHHHHhC
Confidence 44555666666554432345677888521 112233333322122111 244 33321 112224555
Q ss_pred ceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCCCCc
Q 018448 124 RLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPMRYV 161 (355)
Q Consensus 124 ~LLVVtD-P~~D~qaI~EAs~lnIPtIALcDTDs~p~~V 161 (355)
|+.|... +..-...+-||.-+|.|+|+ .|.....+.|
T Consensus 302 dv~v~~s~~e~~~~~llEAmA~G~PVIa-s~~~g~~e~i 339 (396)
T cd03818 302 DVHVYLTYPFVLSWSLLEAMACGCLVVG-SDTAPVREVI 339 (396)
T ss_pred cEEEEcCcccccchHHHHHHHCCCCEEE-cCCCCchhhc
Confidence 7666554 22223478999999999998 3544433443
No 124
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=34.35 E-value=2e+02 Score=26.75 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC-CCchh
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TDHQP 137 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~D~qa 137 (355)
.+.|..|++.+..-...-.+.++|..+..+ .+++.++..|... .-+|+|. .+....-++.-|++|...-. .-...
T Consensus 207 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~-~~~~~~~~~~~~~-~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~ 282 (358)
T cd03812 207 HEFLIEIFAELLKKNPNAKLLLVGDGELEE-EIKKKVKELGLED-KVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLV 282 (358)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCCchHH-HHHHHHHhcCCCC-cEEEecc--cCCHHHHHHhcCEEEecccccCCCHH
Confidence 344555555554322345788888776544 3455555544321 1134443 34444446677877766422 22457
Q ss_pred HHHhhhcCCCEEEE
Q 018448 138 IKEAALGNIPTIAF 151 (355)
Q Consensus 138 I~EAs~lnIPtIAL 151 (355)
+.||..+|.|+|+-
T Consensus 283 ~lEAma~G~PvI~s 296 (358)
T cd03812 283 LIEAQASGLPCILS 296 (358)
T ss_pred HHHHHHhCCCEEEE
Confidence 89999999999984
No 125
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=34.12 E-value=1.2e+02 Score=27.39 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=22.7
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEec
Q 018448 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 121 reP~LLVVtDP~~------------D~qaI~EAs~lnIPtIALcD 153 (355)
..+|.||+..+.. -...|+++...++|++++|=
T Consensus 36 ~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~ 80 (199)
T PRK13181 36 AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICL 80 (199)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECH
Confidence 4567777655332 13567887788999999984
No 126
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.08 E-value=76 Score=28.61 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=28.5
Q ss_pred cCCceEEEeCCCC-----CchhHHHhhhcCCCEEEEecCCCCC-CCceEEec
Q 018448 121 NEPRLLILTDPRT-----DHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~-----D~qaI~EAs~lnIPtIALcDTDs~p-~~VDypIP 166 (355)
+.+|.+|++.+.. ...++.++...|||+|.+ |++.+- ..+++...
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~~~~~~~~~V~~ 104 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRAPPPLKVPHVST 104 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCCCCCCCCCEEEE
Confidence 4678888875432 234588998999999987 555432 22444433
No 127
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=33.98 E-value=1.8e+02 Score=25.65 Aligned_cols=92 Identities=8% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHHHHh-hCCCcEEEEccCc---hhH---HHHHHHHHHcC-Cccc---cCCccCCcccCcccccc---cCCceEEE
Q 018448 63 QMAARVIVAI-ENPGDIIVQSARP---YGQ---RAVLKFAKYTH-AHAI---AGRHTPGTFTNQMQTSF---NEPRLLIL 128 (355)
Q Consensus 63 ~lAa~~I~aI-en~g~ILfVsTr~---~~q---raVlKfA~~tG-a~~I---agRwtpGtLTNqiq~~F---reP~LLVV 128 (355)
..+++.+... ...++|.+++... ..+ +..++.++..| .... .+.|.....+...+.-+ ..|+.+++
T Consensus 108 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (267)
T cd01536 108 RLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAVQDGNWDREKALQAMEDLLQANPDIDAIFA 187 (267)
T ss_pred HHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCccEEEE
Confidence 3455555443 2567899886543 222 44455556553 3321 11121111111111111 23678888
Q ss_pred eCCCCCchhHHHhhhcC----CCEEEEecC
Q 018448 129 TDPRTDHQPIKEAALGN----IPTIAFCDT 154 (355)
Q Consensus 129 tDP~~D~qaI~EAs~ln----IPtIALcDT 154 (355)
.+...-.-+++.+...| +.+++.-|+
T Consensus 188 ~~d~~a~~~~~~l~~~g~~~~i~ivg~d~~ 217 (267)
T cd01536 188 ANDSMALGAVAALKAAGRKGDVKIVGVDGS 217 (267)
T ss_pred ecCCchHHHHHHHHhcCCCCCceEEecCCC
Confidence 87655555666666665 667777665
No 128
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=33.91 E-value=1.7e+02 Score=26.13 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=24.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+..+..+...+.++...|||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~~ 89 (264)
T cd01574 55 QRVDGVIVNAPLDDADAALAAAPADVPVVFV-DGSP 89 (264)
T ss_pred cCCCEEEEeCCCCChHHHHHHHhcCCCEEEE-eccC
Confidence 3578888877655544567777789999997 5543
No 129
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=33.79 E-value=1.3e+02 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.3
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCEEEE
Q 018448 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAF 151 (355)
Q Consensus 121 reP~LLVVtDP~~D~q-aI~EAs~lnIPtIAL 151 (355)
+.+|.||+.....+.. .++++...|||+|.+
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~ 87 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIAL 87 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEe
Confidence 4688888875443332 489999999999988
No 130
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.62 E-value=2.6e+02 Score=28.63 Aligned_cols=120 Identities=12% Similarity=0.130 Sum_probs=62.0
Q ss_pred CceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhH-HHHHHHHHHcCCccccCCccCCcccCcccccccCCceEE
Q 018448 49 GIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ-RAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLI 127 (355)
Q Consensus 49 GI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~q-raVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLV 127 (355)
.++|+-+.++=. -+++++. +.+.+|.+...++... ..+.+-.+..|..++.+.+. ...+..+|+||
T Consensus 16 ~i~v~G~G~sG~---a~a~~L~--~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--------~~~~~~~dlVV 82 (458)
T PRK01710 16 KVAVVGIGVSNI---PLIKFLV--KLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--------LDKLDGFDVIF 82 (458)
T ss_pred eEEEEcccHHHH---HHHHHHH--HCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--------hHHhccCCEEE
Confidence 478888877643 2233333 2444555544333211 11111123445554433221 11135689887
Q ss_pred EeCC--CCCchhHHHhhhcCCCEEEEecCCCCC-CCceEEecCCCCCcchH-HHHHHHHH
Q 018448 128 LTDP--RTDHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSI-GCLFWLLA 183 (355)
Q Consensus 128 VtDP--~~D~qaI~EAs~lnIPtIALcDTDs~p-~~VDypIP~NndS~~SI-~Li~~lLa 183 (355)
++ | ..++..+.+|...|||+++=.+--... ..--++|-|-| |+.+. .++..+|.
T Consensus 83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTn-GKTTT~~ll~~iL~ 140 (458)
T PRK01710 83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSD-GKTTTTTLIYEMLK 140 (458)
T ss_pred EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCC-CHHHHHHHHHHHHH
Confidence 77 5 367788999999999999733221111 11247888864 55554 44444444
No 131
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.57 E-value=1.9e+02 Score=25.77 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTD 155 (355)
+.+|.||+.....+...++.+...|||+|.+-+.+
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~ 88 (268)
T cd01575 54 RRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLP 88 (268)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEecCC
Confidence 46788888876555567788888899999986553
No 132
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.50 E-value=1e+02 Score=28.01 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.1
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++.
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~-d~~~ 95 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKKAGIFVVVV-DRGL 95 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEE-cCCC
Confidence 46888888743333 36789999999999986 5543
No 133
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=33.49 E-value=90 Score=27.90 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEe
Q 018448 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 122 eP~LLVVtDP~~D~qaI~EAs~lnIPtIALc 152 (355)
.+|.+|+.....+...++++...+||+|.+-
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~ipvV~~~ 85 (268)
T cd06298 55 QVDGIIFMGGKISEEHREEFKRSPTPVVLAG 85 (268)
T ss_pred cCCEEEEeCCCCcHHHHHHHhcCCCCEEEEc
Confidence 5677887765545567788888899998883
No 134
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=33.34 E-value=2.8e+02 Score=27.53 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=55.9
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 73 en~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
++++.+++..||.+...+...+.+..+...-..-| .|+=-|++..-...=|.+|||--.. .=|.||...|-||.-+
T Consensus 180 ~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~-~~~~~nPy~~~La~ad~i~VT~DSv--SMvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 180 AYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIW-DGTGENPYLGFLAAADAIVVTEDSV--SMVSEAAATGKPVYVL 255 (311)
T ss_pred hCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEe-cCCCCCcHHHHHHhCCEEEEcCccH--HHHHHHHHcCCCEEEe
Confidence 35578999999999888877777776543322234 6666787766667788999985433 5689999999999766
No 135
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.18 E-value=1.6e+02 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=23.9
Q ss_pred cCCceEEEeCCCC-CchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~-D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+..... ....++++...|||+|.+ |++.
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 89 (266)
T cd06282 54 QRVDGLILTVADAATSPALDLLDAERVPYVLA-YNDP 89 (266)
T ss_pred cCCCEEEEecCCCCchHHHHHHhhCCCCEEEE-eccC
Confidence 4678888764332 234678999999999988 4443
No 136
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=32.22 E-value=1.8e+02 Score=26.65 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHH----HHHHcCCccccCCccCCcccC-cccccccCCceEEEeCCCC-
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLK----FAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPRT- 133 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlK----fA~~tGa~~IagRwtpGtLTN-qiq~~FreP~LLVVtDP~~- 133 (355)
+.|..|+..+..-...-.++++|..........+ .++..|... +-.|.||.... ....-++.=|++|..-..+
T Consensus 201 ~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~ 279 (366)
T cd03822 201 ELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSAD 279 (366)
T ss_pred HHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccc
Confidence 3444444433322123456667764332222221 144444432 11455553332 2233345667776543222
Q ss_pred --CchhHHHhhhcCCCEEEE
Q 018448 134 --DHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 134 --D~qaI~EAs~lnIPtIAL 151 (355)
-...+.||...|+|+|+-
T Consensus 280 ~~~~~~~~Ea~a~G~PvI~~ 299 (366)
T cd03822 280 QTQSGVLAYAIGFGKPVIST 299 (366)
T ss_pred cccchHHHHHHHcCCCEEec
Confidence 245789999999999983
No 137
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.21 E-value=1.2e+02 Score=27.29 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+.....+ ...++++...+||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 55 QKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred cCCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 46788888754333 35678889999999954 5544
No 138
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.07 E-value=98 Score=27.78 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=30.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCC-CCceEEecCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPAN 168 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p-~~VDypIP~N 168 (355)
+.+|.||+..+..+...++++...+||+|.+ |++.+. ..+.+..+-|
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i-~~~~~~~~~~~~v~~d~ 101 (270)
T cd06296 54 RRTDGVILVTPELTSAQRAALRRTGIPFVVV-DPAGDPDADVPSVGATN 101 (270)
T ss_pred cCCCEEEEecCCCChHHHHHHhcCCCCEEEE-ecccCCCCCCCEEEeCc
Confidence 3568888876655556789999999999987 554322 2344444333
No 139
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=32.02 E-value=86 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.357 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcccc
Q 018448 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (355)
Q Consensus 64 lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~Ia 104 (355)
++.+.+..++.+..+.++++.+...+-|..+|+.+|...+.
T Consensus 25 ~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 25 MVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred HHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 44445555656666778899999999999999999998764
No 140
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.01 E-value=2.2e+02 Score=31.20 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=58.4
Q ss_pred eHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC
Q 018448 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (355)
Q Consensus 54 NL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~ 133 (355)
.-.|-..++..|+.-+..-...-.++++|..+.-. -+++.++..|..- +=+|+|. .+....-+..-|+.|+..-.+
T Consensus 408 ~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~e-eLk~la~elgL~d-~V~FlG~--~~Dv~~~LaaADVfVlPS~~E 483 (578)
T PRK15490 408 VGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRA-EAQKRAEQLGILE-RILFVGA--SRDVGYWLQKMNVFILFSRYE 483 (578)
T ss_pred ehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHH-HHHHHHHHcCCCC-cEEECCC--hhhHHHHHHhCCEEEEccccc
Confidence 34444455555554333222335677888765433 4566677666421 1134443 233333467778888765333
Q ss_pred C-chhHHHhhhcCCCEEEEecCCCCCCCc
Q 018448 134 D-HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (355)
Q Consensus 134 D-~qaI~EAs~lnIPtIALcDTDs~p~~V 161 (355)
. ...+-||...|+|+|+- |.....+.|
T Consensus 484 Gfp~vlLEAMA~GlPVVAT-dvGG~~EiV 511 (578)
T PRK15490 484 GLPNVLIEAQMVGVPVIST-PAGGSAECF 511 (578)
T ss_pred CccHHHHHHHHhCCCEEEe-CCCCcHHHc
Confidence 2 56889999999999964 444444433
No 141
>PLN02846 digalactosyldiacylglycerol synthase
Probab=31.74 E-value=1.4e+02 Score=31.62 Aligned_cols=93 Identities=11% Similarity=0.002 Sum_probs=56.5
Q ss_pred eHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC-
Q 018448 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR- 132 (355)
Q Consensus 54 NL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~- 132 (355)
.-+|=++.|..|+..+..-...-+++++|..+.-.+ +++.+...|. ..++.+|. .+.. .-+.--|+.|.....
T Consensus 238 ~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~-L~~~a~~l~l---~~~vf~G~-~~~~-~~~~~~DvFv~pS~~E 311 (462)
T PLN02846 238 VWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDE-VKAAAEKLEL---DVRVYPGR-DHAD-PLFHDYKVFLNPSTTD 311 (462)
T ss_pred cccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHH-HHHHHHhcCC---cEEEECCC-CCHH-HHHHhCCEEEECCCcc
Confidence 445556667777665544223356788999886554 6677777663 23445664 2322 223333766555533
Q ss_pred CCchhHHHhhhcCCCEEEEe
Q 018448 133 TDHQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 133 ~D~qaI~EAs~lnIPtIALc 152 (355)
.--..+.||.-.|+|+|+.=
T Consensus 312 t~g~v~lEAmA~G~PVVa~~ 331 (462)
T PLN02846 312 VVCTTTAEALAMGKIVVCAN 331 (462)
T ss_pred cchHHHHHHHHcCCcEEEec
Confidence 22456789999999999983
No 142
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=31.70 E-value=1.1e+02 Score=28.67 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.8
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|-||+.....+ ...++++...|||+|.+ |++.
T Consensus 55 ~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v-~~~~ 91 (298)
T cd06302 55 QGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH-DSDV 91 (298)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE-cCCC
Confidence 46899998765444 46788999999998876 5543
No 143
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.47 E-value=1.1e+02 Score=27.22 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=29.3
Q ss_pred cCCceEEEeCCCCC-chhHHHhhhcCCCEEEEecCCCCCCCceEEecCC
Q 018448 121 NEPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (355)
Q Consensus 121 reP~LLVVtDP~~D-~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~N 168 (355)
+.+|.+|+.....+ ...++++...|||+|.+ |++.+...+++.-+-|
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~d~ 101 (268)
T cd06289 54 HGVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGAPFDYVGPDN 101 (268)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCCCCCEEeecc
Confidence 34677877754332 34788999999999987 4443323345544433
No 144
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=31.44 E-value=2e+02 Score=26.06 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCcEEEEccCch-hHHHHHHHHHHcCCccccCCccCCcccCc-ccccccCCceEEEeCCC-CCchhHHHhhhcCCCEEEE
Q 018448 75 PGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR-TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 75 ~g~ILfVsTr~~-~qraVlKfA~~tGa~~IagRwtpGtLTNq-iq~~FreP~LLVVtDP~-~D~qaI~EAs~lnIPtIAL 151 (355)
.-++.++|.... .....++.++..+.... -+|+ |..... ...-++.-|++|...-. .=...+-||..+|+|+|+-
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-v~~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGLEDR-VTFT-GMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCccce-EEEc-CCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 456777876543 23334444344443211 1233 333321 12224566777665432 2245789999999999984
No 145
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=31.27 E-value=1e+02 Score=32.52 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=56.1
Q ss_pred eeHHHHHHHHHHHHHHHHHh--hCC-CcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccc----cccCCce
Q 018448 53 INLGKTWEKLQMAARVIVAI--ENP-GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRL 125 (355)
Q Consensus 53 INL~kTwekL~lAa~~I~aI--en~-g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~----~FreP~L 125 (355)
-....| +.|.-+|.++ +.| -.|++.+.-++|.+.+. +..|.. +..+++|= -|..-. ..+.|++
T Consensus 57 aSVGEv----~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~---~~~~~~-v~h~YlP~--D~~~~v~rFl~~~~P~l 126 (419)
T COG1519 57 ASVGEV----LAALPLVRALRERFPDLRILVTTMTPTGAERAA---ALFGDS-VIHQYLPL--DLPIAVRRFLRKWRPKL 126 (419)
T ss_pred cchhHH----HHHHHHHHHHHHhCCCCCEEEEecCccHHHHHH---HHcCCC-eEEEecCc--CchHHHHHHHHhcCCCE
Confidence 445555 2344555666 333 36666665677765544 333333 55566662 222222 2589999
Q ss_pred EEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 126 LILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 126 LVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
+|++...-=..-|.|+.+.|||++=+
T Consensus 127 ~Ii~EtElWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 127 LIIMETELWPNLINELKRRGIPLVLV 152 (419)
T ss_pred EEEEeccccHHHHHHHHHcCCCEEEE
Confidence 99999776678899999999999743
No 146
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=31.10 E-value=2.3e+02 Score=27.16 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHh-hCCCcEEEEccCch--hHHHHHHHHHHcCCccccCCccCCcccCc-c---cccccCCc-eEEEeCCCCCch
Q 018448 65 AARVIVAI-ENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-M---QTSFNEPR-LLILTDPRTDHQ 136 (355)
Q Consensus 65 Aa~~I~aI-en~g~ILfVsTr~~--~qraVlKfA~~tGa~~IagRwtpGtLTNq-i---q~~FreP~-LLVVtDP~~D~q 136 (355)
|..+|..+ +++.++.+|++|.+ .+..+....+..|-.-...-.++|.-+.. + .......+ .+.|=|...|-+
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~i~i~vGDs~~DI~ 198 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKNIRIHYGDSDNDIT 198 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCCCeEEEeCCHHHHH
Confidence 45566666 56668888888854 33455555666565321111222222111 1 11122333 466678777754
Q ss_pred hHHHhhhcCCCEEEEe-cCCCCCCCceEEecCC
Q 018448 137 PIKEAALGNIPTIAFC-DTDSPMRYVDIGIPAN 168 (355)
Q Consensus 137 aI~EAs~lnIPtIALc-DTDs~p~~VDypIP~N 168 (355)
-|...||.+|++. ..++.- -|+|-|
T Consensus 199 ---aAk~AGi~~I~V~~g~~s~~----~~~~~~ 224 (237)
T TIGR01672 199 ---AAKEAGARGIRILRASNSTY----KPLPQA 224 (237)
T ss_pred ---HHHHCCCCEEEEEecCCCCC----CCcccc
Confidence 4555689988884 444421 166765
No 147
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.89 E-value=4.8e+02 Score=24.90 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCc-ccCcccccccCCceEEEeCCCCC----c
Q 018448 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSFNEPRLLILTDPRTD----H 135 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGt-LTNqiq~~FreP~LLVVtDP~~D----~ 135 (355)
.+.+|.+.|. +..|+|+|.|-...|- +.+|||.+.-++-..-.|++.+ --.-..-....=|+||.+.-.-+ .
T Consensus 27 ~~~~a~~~i~--~~~gkv~V~G~GkSG~-Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~ 103 (202)
T COG0794 27 DFVRAVELIL--ECKGKVFVTGVGKSGL-IGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELL 103 (202)
T ss_pred HHHHHHHHHH--hcCCcEEEEcCChhHH-HHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHH
Confidence 3334443333 3478899988876654 5678887743321111222210 00111122345577777753322 2
Q ss_pred hhHHHhhhcCCCEEEEe-cCCCCCC---CceEEecCCCC
Q 018448 136 QPIKEAALGNIPTIAFC-DTDSPMR---YVDIGIPANNK 170 (355)
Q Consensus 136 qaI~EAs~lnIPtIALc-DTDs~p~---~VDypIP~Nnd 170 (355)
.++.=|+..++|+||+. +-||++- -+.+.||.-.+
T Consensus 104 ~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e 142 (202)
T COG0794 104 NLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTE 142 (202)
T ss_pred HHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccc
Confidence 35677888999999997 4455442 35666776443
No 148
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=30.88 E-value=1.6e+02 Score=27.03 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=38.9
Q ss_pred EEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CCC------CchhHHHhhhcCCCEEE
Q 018448 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT------DHQPIKEAALGNIPTIA 150 (355)
Q Consensus 78 ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~~------D~qaI~EAs~lnIPtIA 150 (355)
||+|.+......-+....++.|.....-|+...++ .......||.||+.. |.. ....++ ....++|++|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~---~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~-~~~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTI---SDIENMKPDFLMISPGPCSPNEAGISMEVIR-YFAGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCH---HHHhhCCCCEEEECCCCCChHhCCCchHHHH-HhcCCCCEEE
Confidence 67777765554445555566676554444332211 111223689988886 322 122333 3346899999
Q ss_pred Ee
Q 018448 151 FC 152 (355)
Q Consensus 151 Lc 152 (355)
+|
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 97
No 149
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=30.62 E-value=1.4e+02 Score=27.15 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHHhhhcCCCEEEEe
Q 018448 138 IKEAALGNIPTIAFC 152 (355)
Q Consensus 138 I~EAs~lnIPtIALc 152 (355)
++++...+.|+.++|
T Consensus 64 ~~~~~~~~~pvlGiC 78 (196)
T TIGR01855 64 VELVVRLGKPVLGIC 78 (196)
T ss_pred HHHHHhCCCCEEEEC
Confidence 377777899999997
No 150
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.27 E-value=94 Score=23.74 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCccc
Q 018448 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (355)
Q Consensus 63 ~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLT 113 (355)
.++.+.+..++.+..+.++.+.+...+-|.++++..|...+.-.=-+|.++
T Consensus 14 i~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd03423 14 MMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQETEDEPYR 64 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEEcCCEEE
Confidence 344555566656666778888888989999999999988753221455443
No 151
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.27 E-value=97 Score=28.70 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=24.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+.....+ ...++++...|||+|.+ |.+.
T Consensus 54 ~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~-~~~~ 90 (288)
T cd01538 54 KGVDVLVIAPVDGEALASAVEKAADAGIPVIAY-DRLI 90 (288)
T ss_pred cCCCEEEEecCChhhHHHHHHHHHHCCCCEEEE-CCCC
Confidence 45788887643322 45778999999999987 5443
No 152
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=29.41 E-value=1.8e+02 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=20.7
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCEEEE
Q 018448 123 PRLLILT--DPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 123 P~LLVVt--DP~~D~qaI~EAs~lnIPtIAL 151 (355)
+.++|+. |+..|....+.|...+||+=..
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 5555554 4567788889999999987443
No 153
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.28 E-value=1.3e+02 Score=22.48 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcc
Q 018448 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA 102 (355)
Q Consensus 63 ~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~ 102 (355)
.++.+.+ .++.++.+.++.+.+...+-|..+|+..|..+
T Consensus 14 l~~k~al-~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 14 IKTKKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYEV 52 (67)
T ss_pred HHHHHHH-hcCCCCEEEEEEcChhHHHHHHHHHHHcCCEE
Confidence 4455555 55566677788888888889999999998876
No 154
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.22 E-value=3.8e+02 Score=27.30 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc--hhHHHHHHHHHHcCCccccCC----------ccC---CcccCcccc-cccCCce
Q 018448 62 LQMAARVIVAIENPGDIIVQSARP--YGQRAVLKFAKYTHAHAIAGR----------HTP---GTFTNQMQT-SFNEPRL 125 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr~--~~qraVlKfA~~tGa~~IagR----------wtp---GtLTNqiq~-~FreP~L 125 (355)
+..++..|.+-+ .-+++++..- ...+.+.++|+++|+..++.- |.+ |.+.+.... .. ++|+
T Consensus 201 i~~~~~~l~~Ak--rPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~aDl 277 (432)
T TIGR00173 201 LDELWDRLNQAK--RGVIVAGPLPPAEDAEALAALAEALGWPLLADPLSGLRGGPHLVIDHYDLLLANPELREEL-QPDL 277 (432)
T ss_pred HHHHHHHHhhcC--CcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCcCHHHHHhcCCchhhhC-CCCE
Confidence 445555554333 3466777542 267889999999998766532 222 122222211 24 8999
Q ss_pred EEEeCCCCCchhHHHhh-hcCCCEEEEecCCCCC----CCceEEecCC
Q 018448 126 LILTDPRTDHQPIKEAA-LGNIPTIAFCDTDSPM----RYVDIGIPAN 168 (355)
Q Consensus 126 LVVtDP~~D~qaI~EAs-~lnIPtIALcDTDs~p----~~VDypIP~N 168 (355)
||++..+-+......-. .-+..+|-+ |.|..- ..+|..|-++
T Consensus 278 vl~lG~~~~~~~~~~~~~~~~~~~i~v-d~d~~~~~~~~~~~~~i~~D 324 (432)
T TIGR00173 278 VIRFGGPPVSKRLRQWLARQPAEYWVV-DPDPGWLDPSHHATTRLEAS 324 (432)
T ss_pred EEEeCCCcchhHHHHHHhCCCCcEEEE-CCCCCccCCCCCceEEEEEC
Confidence 99999886544443321 123455544 665421 1257777775
No 155
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=29.07 E-value=2.3e+02 Score=26.14 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC-CCc
Q 018448 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TDH 135 (355)
Q Consensus 57 kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~D~ 135 (355)
|=++.+..|++.+..-...-++++++..+... -+.+.++..|... +=+++ |.. .....-++.-|++|+..-. .-.
T Consensus 201 kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~-~~~~~~~~~~~~~-~v~~~-g~~-~~~~~~~~~ad~~v~~s~~e~~~ 276 (360)
T cd04951 201 KDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRA-TLERLIKALGLSN-RVKLL-GLR-DDIAAYYNAADLFVLSSAWEGFG 276 (360)
T ss_pred cCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHH-HHHHHHHhcCCCC-cEEEe-ccc-ccHHHHHHhhceEEecccccCCC
Confidence 33444555554443222235677788766443 3555555554321 11233 322 2233335666776654321 114
Q ss_pred hhHHHhhhcCCCEEE
Q 018448 136 QPIKEAALGNIPTIA 150 (355)
Q Consensus 136 qaI~EAs~lnIPtIA 150 (355)
..+-||..+|+|+|+
T Consensus 277 ~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 277 LVVAEAMACELPVVA 291 (360)
T ss_pred hHHHHHHHcCCCEEE
Confidence 578899999999997
No 156
>PRK10637 cysG siroheme synthase; Provisional
Probab=29.02 E-value=1.2e+02 Score=31.56 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=19.6
Q ss_pred CCceEEEe--CCCCCchhHHHhhhcCCCE
Q 018448 122 EPRLLILT--DPRTDHQPIKEAALGNIPT 148 (355)
Q Consensus 122 eP~LLVVt--DP~~D~qaI~EAs~lnIPt 148 (355)
-.+++|+. |+..+++..++|...||++
T Consensus 72 ~~~lv~~at~d~~~n~~i~~~a~~~~~lv 100 (457)
T PRK10637 72 TCWLAIAATDDDAVNQRVSEAAEARRIFC 100 (457)
T ss_pred CCEEEEECCCCHHHhHHHHHHHHHcCcEE
Confidence 34555444 5678888899999999875
No 157
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=28.86 E-value=1.1e+02 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=28.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.+|++....+...+..+...+||+|.+ |.+.+ .+++..+
T Consensus 54 ~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~-~~~~~--~~~~v~~ 96 (259)
T cd01542 54 QKVDGIILLATTITDEHREAIKKLNVPVVVV-GQDYP--GISSVVY 96 (259)
T ss_pred cCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE-eccCC--CCCEEEE
Confidence 4578888886554445667777789999988 44332 3444443
No 158
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.47 E-value=76 Score=27.71 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=23.9
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
...-..||++|......+...+..-...||||+.+
T Consensus 64 ~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 64 LIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred HHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 33447899988754332223666678899999887
No 159
>PRK05858 hypothetical protein; Provisional
Probab=28.45 E-value=2.1e+02 Score=30.02 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCccccCCccCCcccCccc--------ccccCCceEEEe
Q 018448 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILT 129 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsT--r-~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq--------~~FreP~LLVVt 129 (355)
.+..++..|..- +.-+++++. + ....+++.+||+++|...++.---.|.|....- ..+++.|+||++
T Consensus 192 ~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~v 269 (542)
T PRK05858 192 ALARAAGLLAEA--QRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVV 269 (542)
T ss_pred HHHHHHHHHHhC--CCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEE
Confidence 355555555433 334667775 2 356789999999999976654333355543221 136899999999
Q ss_pred CCCCC
Q 018448 130 DPRTD 134 (355)
Q Consensus 130 DP~~D 134 (355)
+.+-+
T Consensus 270 G~~~~ 274 (542)
T PRK05858 270 GVPMD 274 (542)
T ss_pred CCCCc
Confidence 97654
No 160
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=28.34 E-value=1.9e+02 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=25.5
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 122 eP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
.+|-||+.....+...++++...|||+|.+ |++.
T Consensus 55 ~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~-~~~~ 88 (269)
T cd06297 55 LTDGLLLASYDLTERLAERRLPTERPVVLV-DAEN 88 (269)
T ss_pred CCCEEEEecCccChHHHHHHhhcCCCEEEE-ccCC
Confidence 477788876555666778888899999988 5543
No 161
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.34 E-value=2.4e+02 Score=25.37 Aligned_cols=61 Identities=21% Similarity=0.181 Sum_probs=33.5
Q ss_pred cCCceEEEeCCCC--CchhHHHhhhcCCCEEEEecCCCCC-CCceEEecCCCCCcchHHHHHHHHHHH
Q 018448 121 NEPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLARM 185 (355)
Q Consensus 121 reP~LLVVtDP~~--D~qaI~EAs~lnIPtIALcDTDs~p-~~VDypIP~NndS~~SI~Li~~lLare 185 (355)
+.+|.+|+..... ....+.++...+||+|.+ |...+. .++.+ |-.| ...+-..+...|.+.
T Consensus 54 ~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~~-v~~d--~~~~g~~~~~~l~~~ 117 (277)
T cd06319 54 KGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA-DIGAEGGDYVSY-IKSD--NYEGAYDLGKFLAAA 117 (277)
T ss_pred cCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE-ecCCCCCceEEE-Eeec--cHHHHHHHHHHHHHH
Confidence 4578777654332 235678888999999975 554322 23333 3333 233344444445443
No 162
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=28.13 E-value=94 Score=32.82 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=46.8
Q ss_pred CceeeeHHHHHHHHHHHHHHHHHhhC--CCcEEEEccCchhHHHHHHHHHHcCC----------ccccCCccCCccc
Q 018448 49 GIYIINLGKTWEKLQMAARVIVAIEN--PGDIIVQSARPYGQRAVLKFAKYTHA----------HAIAGRHTPGTFT 113 (355)
Q Consensus 49 GI~IINL~kTwekL~lAa~~I~aIen--~g~ILfVsTr~~~qraVlKfA~~tGa----------~~IagRwtpGtLT 113 (355)
..|..|+..|.|.+.++......+.+ ..+|.|.+|...+..+.+|||.+-+. -++.|.+-|+||-
T Consensus 88 ~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlg 164 (433)
T KOG1401|consen 88 LGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLG 164 (433)
T ss_pred heeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchh
Confidence 45888999999966655555555533 35888999999999999999987533 2345666666653
No 163
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=27.91 E-value=2.1e+02 Score=30.22 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCccccCCccCCcccCcc---------------cccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsT--r-~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi---------------q~~Fre 122 (355)
.+..++..|.+-++ -+++++. + ....+.+.++|+++|+..++.-.-.|.+-... ...+++
T Consensus 196 ~i~~~a~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~ 273 (561)
T PRK06048 196 QIKRAAELIMKAER--PIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQE 273 (561)
T ss_pred HHHHHHHHHHhCCC--CEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHHHh
Confidence 46666666655433 3556654 2 34678899999999998776544445443221 112579
Q ss_pred CceEEEeCCCCC
Q 018448 123 PRLLILTDPRTD 134 (355)
Q Consensus 123 P~LLVVtDP~~D 134 (355)
.|+|++++.+-+
T Consensus 274 aD~vl~lG~~~~ 285 (561)
T PRK06048 274 SDLIIAVGARFD 285 (561)
T ss_pred CCEEEEECCCCC
Confidence 999999997743
No 164
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=27.68 E-value=1.3e+02 Score=27.31 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=24.1
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTD 155 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~ 90 (270)
T cd06308 55 QGVDLLIISPNEAAPLTPVVEEAYRAGIPVILL-DRK 90 (270)
T ss_pred hCCCEEEEecCchhhchHHHHHHHHCCCCEEEe-CCC
Confidence 45788888754433 45678888899999966 443
No 165
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=27.61 E-value=42 Score=26.17 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.1
Q ss_pred hhHHHhhhcCCCEEEEecC
Q 018448 136 QPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 136 qaI~EAs~lnIPtIALcDT 154 (355)
.=|.|+.-.|.||+|||--
T Consensus 15 ~kI~esav~G~pVvALCGk 33 (58)
T PF11238_consen 15 DKIAESAVMGTPVVALCGK 33 (58)
T ss_pred hHHHHHHhcCceeEeeeCc
Confidence 4588999999999999843
No 166
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=27.21 E-value=1.2e+02 Score=31.82 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcc
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA 102 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~ 102 (355)
+.|.+|+..++.-++|--.-.-+|...+|++-.+.|+++|+..
T Consensus 67 eAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gavi 109 (429)
T COG1029 67 EAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVI 109 (429)
T ss_pred HHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEe
Confidence 5577899988877666433335567789999999999999864
No 167
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=27.10 E-value=1.9e+02 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=14.9
Q ss_pred chhHHHhhhcCCCEEEEe
Q 018448 135 HQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 135 ~qaI~EAs~lnIPtIALc 152 (355)
...++++...++|++|+|
T Consensus 60 ~~~i~~~~~~~~PilGIC 77 (188)
T TIGR00888 60 PRADEKIFELGVPVLGIC 77 (188)
T ss_pred hHHHHHHHhCCCCEEEEC
Confidence 356788888899999998
No 168
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=27.04 E-value=2e+02 Score=30.39 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCcccCccc---------------ccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq---------------~~Fre 122 (355)
.+..++..|.+-++| +++++.. ......+.+||+++|+..++.-.-.|.|-+-.- ..+.+
T Consensus 185 ~i~~~~~~L~~A~rP--~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~ 262 (579)
T TIGR03457 185 SLAQAARLLAEAKFP--VIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISD 262 (579)
T ss_pred HHHHHHHHHHhCCCC--EEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHh
Confidence 455566666543333 5666653 356788999999999987764333344332210 12578
Q ss_pred CceEEEeCCCCC
Q 018448 123 PRLLILTDPRTD 134 (355)
Q Consensus 123 P~LLVVtDP~~D 134 (355)
.|+|++++.+-+
T Consensus 263 aDlil~lG~~~~ 274 (579)
T TIGR03457 263 ADVVLALGTRLG 274 (579)
T ss_pred CCEEEEECCCCc
Confidence 999999997754
No 169
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=26.94 E-value=1.1e+02 Score=33.65 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhHHHhhhcCCCEEEEecCCCCCCC--ceEEec---------CCCCCcchHHHHHHHHHHHHHHhhcCCCCCC
Q 018448 136 QPIKEAALGNIPTIAFCDTDSPMRY--VDIGIP---------ANNKGKHSIGCLFWLLARMVLQMRGTIRPGH 197 (355)
Q Consensus 136 qaI~EAs~lnIPtIALcDTDs~p~~--VDypIP---------~NndS~~SI~Li~~lLareVL~~rGtis~~~ 197 (355)
.|+++|+..|.+++++||..-..-. .|+.++ +-.|+-.|--+.+++|+-.+-+.+|+++.+.
T Consensus 348 ~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g~i~~~~ 420 (597)
T COG0449 348 AALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISEEE 420 (597)
T ss_pred HHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhHhhCccchhH
No 170
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.83 E-value=2.3e+02 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=12.1
Q ss_pred HHHhhhcCCCEEEEec
Q 018448 138 IKEAALGNIPTIAFCD 153 (355)
Q Consensus 138 I~EAs~lnIPtIALcD 153 (355)
.++....++|++++|-
T Consensus 63 ~~~~~~~~~PilGIC~ 78 (181)
T cd01742 63 DPEIFELGVPVLGICY 78 (181)
T ss_pred hHHHHhcCCCEEEEcH
Confidence 4566667999999983
No 171
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=26.65 E-value=1.3e+02 Score=28.45 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHH--------Hhh--CCCcEEEEcc---CchhHH---HHHHHHHHcCCccccCCccCCcccCccc--
Q 018448 56 GKTWEKLQMAARVIV--------AIE--NPGDIIVQSA---RPYGQR---AVLKFAKYTHAHAIAGRHTPGTFTNQMQ-- 117 (355)
Q Consensus 56 ~kTwekL~lAa~~I~--------aIe--n~g~ILfVsT---r~~~qr---aVlKfA~~tGa~~IagRwtpGtLTNqiq-- 117 (355)
.+|-++.++|++-+- .+. +.+.|-++-. .++..+ .+.+.++..|-..+-. ...+.-..+.+
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 112 (331)
T PRK14987 34 VALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLA-HYGYKPEMEQERL 112 (331)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEe-cCCCCHHHHHHHH
Confidence 378888888886652 222 1234444432 334443 3445555556432221 11111111111
Q ss_pred --ccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 018448 118 --TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 118 --~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTD 155 (355)
..-+..|.+|+.....+...++++...|||+|.+.|.+
T Consensus 113 ~~~~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~ 152 (331)
T PRK14987 113 ESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQ 152 (331)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHHHHhCCCCEEEEecCC
Confidence 01257899998765445567888888999999987654
No 172
>PRK08322 acetolactate synthase; Reviewed
Probab=26.42 E-value=3.3e+02 Score=28.42 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCccccCCccCCcccCcc---------------cccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsT---r~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi---------------q~~Fre 122 (355)
.+.+++..|.+-+ .-++++|. +....+.+.++|+++|+..++.---.|.+-... ...+.+
T Consensus 185 ~i~~~~~~l~~A~--rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~ 262 (547)
T PRK08322 185 AIERAAEAIQAAK--NPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEH 262 (547)
T ss_pred HHHHHHHHHHhCC--CcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHHh
Confidence 4555555554433 34666665 235678899999999997665311123333211 123579
Q ss_pred CceEEEeCCCCC
Q 018448 123 PRLLILTDPRTD 134 (355)
Q Consensus 123 P~LLVVtDP~~D 134 (355)
.|+||++..+-+
T Consensus 263 aDlil~lG~~l~ 274 (547)
T PRK08322 263 ADLIINVGHDVI 274 (547)
T ss_pred CCEEEEECCCCc
Confidence 999999997644
No 173
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=26.39 E-value=2.3e+02 Score=29.91 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCcccCccc--------ccccCCceEEE
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLIL 128 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq--------~~FreP~LLVV 128 (355)
..|.+++..|..-++ -++++|.. ....+.+.++|+++|+..++.-.--|.|..... ..+.+.|+||+
T Consensus 201 ~~l~~~~~~L~~Akr--PvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~ 278 (569)
T PRK09259 201 EAVDRALDLLKKAKR--PLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLL 278 (569)
T ss_pred HHHHHHHHHHHhCCC--CEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEE
Confidence 345566666654333 35566543 346789999999999987664333455543221 23689999999
Q ss_pred eCCCCC
Q 018448 129 TDPRTD 134 (355)
Q Consensus 129 tDP~~D 134 (355)
++.+-+
T Consensus 279 lG~~~~ 284 (569)
T PRK09259 279 VGARLN 284 (569)
T ss_pred eCCCCc
Confidence 997643
No 174
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=1.2e+02 Score=31.97 Aligned_cols=69 Identities=29% Similarity=0.356 Sum_probs=45.0
Q ss_pred CCCCCCCCCCchH-------HHHHHHH-hhcccccCCchhHHHHHhhhhchHHHHHHHhhhhHHH---HHHHHHHHHHHh
Q 018448 279 GDGWDAVPAPPMA-------ALQLLMF-LLPHHLLDGTNFILREFCFNHFKPLLLQLCVSLNFFM---FCKELWLFSFFF 347 (355)
Q Consensus 279 ~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 347 (355)
+..|-+|+-.|.- .+|.|.- -.-|-+|--.||--|---.-.+--+|.-||..|-+|- .||.||.|||.-
T Consensus 378 APSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvC 457 (549)
T KOG4683|consen 378 APSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVC 457 (549)
T ss_pred CchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhH
Confidence 5558777655544 3333322 2345566666765554434445667888899999886 899999999864
No 175
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=26.25 E-value=2.6e+02 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.6
Q ss_pred cccCCceEEEeCCCCC------------chhHHHhhhcCCCEEEEecC
Q 018448 119 SFNEPRLLILTDPRTD------------HQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 119 ~FreP~LLVVtDP~~D------------~qaI~EAs~lnIPtIALcDT 154 (355)
.+...|.||++.-..+ ...|+++...++|++|+|-.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G 90 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLG 90 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECcc
Confidence 4567788888864332 23567788889999999854
No 176
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=25.64 E-value=97 Score=30.73 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=25.1
Q ss_pred cCCceEEEeCCCCC---chhHHHh-hhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD---HQPIKEA-ALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D---~qaI~EA-s~lnIPtIALcDTDs 156 (355)
+.||++|++.|+.- ...-+|. +..|||+|-|.|.-.
T Consensus 59 ~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 59 WKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred hCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 58999999999832 2233443 346999999977543
No 177
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=25.58 E-value=2.7e+02 Score=26.52 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=28.2
Q ss_pred ccCCcccCcc-cccccCCceEEEeCCC-CCchhHHHhhhcCCCEEEE
Q 018448 107 HTPGTFTNQM-QTSFNEPRLLILTDPR-TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 107 wtpGtLTNqi-q~~FreP~LLVVtDP~-~D~qaI~EAs~lnIPtIAL 151 (355)
|.+|.++... ..-+..-|++|+..-. .-...+.||...|+|+|+-
T Consensus 264 ~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s 310 (388)
T TIGR02149 264 WINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVAS 310 (388)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEe
Confidence 5555554332 2224666777765422 2245779999999999983
No 178
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=25.55 E-value=2.7e+02 Score=25.17 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=41.7
Q ss_pred EEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CC---C---CchhHHHhhhcCCCEEE
Q 018448 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---T---DHQPIKEAALGNIPTIA 150 (355)
Q Consensus 78 ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~---~---D~qaI~EAs~lnIPtIA 150 (355)
||+|.+......-+..+.+..|.....-++-.+.+-. ..-..|+.||+.. |. . ....++ ....++|+.|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~~~~~~iilsgGp~~~~~~~~~~~~i~-~~~~~~PiLG 77 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDG---IEALNPTHLVISPGPCTPNEAGISLQAIE-HFAGKLPILG 77 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHH---HhhCCCCEEEEeCCCCChHHCcchHHHHH-HhcCCCCEEE
Confidence 7888877666555666777778765444443232211 1123588888885 31 1 123343 3467999999
Q ss_pred Ee
Q 018448 151 FC 152 (355)
Q Consensus 151 Lc 152 (355)
+|
T Consensus 78 IC 79 (193)
T PRK08857 78 VC 79 (193)
T ss_pred Ec
Confidence 97
No 179
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.15 E-value=3.6e+02 Score=25.30 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC-CchhH
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQPI 138 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~-D~qaI 138 (355)
+.|..|+..+.. ..+.+++++|..+.. ..+++.++..|... .=+|+| .. +....-+..-|++|+....+ -...+
T Consensus 213 ~~li~a~~~l~~-~~~~~l~i~G~g~~~-~~~~~~~~~~~~~~-~v~~~g-~~-~~~~~~~~~~d~~v~ps~~E~~~~~~ 287 (371)
T cd04962 213 DDVIRIFAKVRK-EVPARLLLVGDGPER-SPAERLARELGLQD-DVLFLG-KQ-DHVEELLSIADLFLLPSEKESFGLAA 287 (371)
T ss_pred HHHHHHHHHHHh-cCCceEEEEcCCcCH-HHHHHHHHHcCCCc-eEEEec-Cc-ccHHHHHHhcCEEEeCCCcCCCccHH
Confidence 334444444332 134577788876544 34556666665421 112343 22 22333356668877765322 24578
Q ss_pred HHhhhcCCCEEE
Q 018448 139 KEAALGNIPTIA 150 (355)
Q Consensus 139 ~EAs~lnIPtIA 150 (355)
.||...|+|+|+
T Consensus 288 ~EAma~g~PvI~ 299 (371)
T cd04962 288 LEAMACGVPVVA 299 (371)
T ss_pred HHHHHcCCCEEE
Confidence 999999999998
No 180
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=25.05 E-value=1.8e+02 Score=27.98 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=25.8
Q ss_pred cCCceEEEe--CCCCCchhHHHhhhcCCCEEEEecCC
Q 018448 121 NEPRLLILT--DPRTDHQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 121 reP~LLVVt--DP~~D~qaI~EAs~lnIPtIALcDTD 155 (355)
+.+|.+|+. |...+...++++...+||+|.+ |+.
T Consensus 80 ~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~v-d~~ 115 (330)
T PRK15395 80 KGVKALAINLVDPAAAPTVIEKARGQDVPVVFF-NKE 115 (330)
T ss_pred cCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEE-cCC
Confidence 578999887 4434556789988999999988 543
No 181
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=25.02 E-value=1.7e+02 Score=27.59 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=30.5
Q ss_pred cCCceEEEeCCCC-CchhHHHhhhcCCCEEEEecCCCCCCCceEEecCC
Q 018448 121 NEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (355)
Q Consensus 121 reP~LLVVtDP~~-D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~N 168 (355)
+..|-||+..... +...+.+....+||+|. +|.+.+-..+++..+-|
T Consensus 115 ~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~-~~~~~~~~~~~~V~~dn 162 (327)
T TIGR02417 115 RQVDALIVASCMPPEDAYYQKLQNEGLPVVA-LDRSLDDEHFCSVISDD 162 (327)
T ss_pred cCCCEEEEeCCCCCChHHHHHHHhcCCCEEE-EccccCCCCCCEEEeCc
Confidence 5678888875433 44667888888999995 56654333355555444
No 182
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=24.94 E-value=2.4e+02 Score=28.33 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCc-ccccccCCceEEEeCCC--
Q 018448 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR-- 132 (355)
Q Consensus 56 ~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNq-iq~~FreP~LLVVtDP~-- 132 (355)
.|=++.|..|+..+..-...-++.++|..+.- .-+++.++..|..-. -.|+ |..++. ...-++.-|+.|+..-.
T Consensus 234 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~-~~l~~~~~~~~l~~~-V~~~-G~~~~~el~~~l~~aDv~v~pS~~~~ 310 (406)
T PRK15427 234 KKGLHVAIEACRQLKEQGVAFRYRILGIGPWE-RRLRTLIEQYQLEDV-VEMP-GFKPSHEVKAMLDDADVFLLPSVTGA 310 (406)
T ss_pred hcCHHHHHHHHHHHHhhCCCEEEEEEECchhH-HHHHHHHHHcCCCCe-EEEe-CCCCHHHHHHHHHhCCEEEECCccCC
Confidence 34445566666555432123456778876643 345667777664311 1233 444432 22335677888775421
Q ss_pred ---CC--chhHHHhhhcCCCEEEEecCCCCCCCc
Q 018448 133 ---TD--HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (355)
Q Consensus 133 ---~D--~qaI~EAs~lnIPtIALcDTDs~p~~V 161 (355)
.+ ...+.||..+|+|||+- |....++.|
T Consensus 311 ~g~~Eg~p~~llEAma~G~PVI~t-~~~g~~E~v 343 (406)
T PRK15427 311 DGDMEGIPVALMEAMAVGIPVVST-LHSGIPELV 343 (406)
T ss_pred CCCccCccHHHHHHHhCCCCEEEe-CCCCchhhh
Confidence 12 25689999999999985 444444443
No 183
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=24.91 E-value=1.6e+02 Score=26.75 Aligned_cols=72 Identities=13% Similarity=0.239 Sum_probs=35.3
Q ss_pred EEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-C---CCC--chhHHHhhhcCCCEEEE
Q 018448 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-P---RTD--HQPIKEAALGNIPTIAF 151 (355)
Q Consensus 78 ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P---~~D--~qaI~EAs~lnIPtIAL 151 (355)
||+|.+......-+...-...|+....-++...++. ...-..||.||+.. | ..+ ...+.+....++|+.|+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~---~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLA---DIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV 78 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHH---HHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE
Confidence 566666543333233333445665444344322211 11113588888875 3 222 11233334568999999
Q ss_pred e
Q 018448 152 C 152 (355)
Q Consensus 152 c 152 (355)
|
T Consensus 79 C 79 (187)
T PRK08007 79 C 79 (187)
T ss_pred C
Confidence 7
No 184
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.59 E-value=2.5e+02 Score=20.93 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=24.5
Q ss_pred ccCCceEEEeCCCC----CchhHHHhhhcCCCEEEEe
Q 018448 120 FNEPRLLILTDPRT----DHQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 120 FreP~LLVVtDP~~----D~qaI~EAs~lnIPtIALc 152 (355)
+.+=|++|+++... -..++++++..|.|+|+++
T Consensus 45 ~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 45 LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 34557777776443 2446788999999999998
No 185
>PRK08266 hypothetical protein; Provisional
Probab=24.57 E-value=2.7e+02 Score=29.10 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc-hhHHHHHHHHHHcCCccccCCccCCcccCccc---------ccccCCceEEEeCC
Q 018448 62 LQMAARVIVAIENPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------TSFNEPRLLILTDP 131 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr~-~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq---------~~FreP~LLVVtDP 131 (355)
+..++..|.+- +.-++++|... ...+.+.++|+++|+..++.---.|.+..-.. ..+.+.|+||++..
T Consensus 195 i~~~~~~L~~A--krPvIv~G~g~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~ 272 (542)
T PRK08266 195 IAAAAALIAAA--KNPMIFVGGGAAGAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGS 272 (542)
T ss_pred HHHHHHHHHhC--CCCEEEECCChhhHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCC
Confidence 44555544432 33466777653 46788899999999987664222255542211 13578999999998
Q ss_pred CCCch
Q 018448 132 RTDHQ 136 (355)
Q Consensus 132 ~~D~q 136 (355)
+-+..
T Consensus 273 ~~~~~ 277 (542)
T PRK08266 273 RLELP 277 (542)
T ss_pred CcCcc
Confidence 75544
No 186
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=24.54 E-value=1.5e+02 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=24.1
Q ss_pred cCCceEEEeCCC-CCchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~-~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+..|.||+.... .+...++++...|||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i-~~~~ 90 (270)
T cd01545 55 SRVDGVILTPPLSDNPELLDLLDEAGVPYVRI-APGT 90 (270)
T ss_pred CCCCEEEEeCCCCCccHHHHHHHhcCCCEEEE-ecCC
Confidence 356777776443 2445678888899999988 5443
No 187
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=24.52 E-value=2.5e+02 Score=29.09 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=38.5
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----ch---hHHHhhhcCCCE
Q 018448 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQ---PIKEAALGNIPT 148 (355)
Q Consensus 76 g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~q---aI~EAs~lnIPt 148 (355)
.+|++|... .+..+.++-++.|+..+.-++. .+ .....-..||.||+++-..| .. .+++....++|+
T Consensus 193 ~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~---~~-~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~Pi 266 (382)
T CHL00197 193 LKIIVIDFG--VKYNILRRLKSFGCSITVVPAT---SP-YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPI 266 (382)
T ss_pred CEEEEEECC--cHHHHHHHHHHCCCeEEEEcCC---CC-HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCE
Confidence 467777663 3344556666667754333332 11 11112236899999753222 21 334444458999
Q ss_pred EEEe
Q 018448 149 IAFC 152 (355)
Q Consensus 149 IALc 152 (355)
+++|
T Consensus 267 lGIC 270 (382)
T CHL00197 267 FGIC 270 (382)
T ss_pred EEEc
Confidence 9998
No 188
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=24.34 E-value=5.2e+02 Score=23.87 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=47.2
Q ss_pred cEEEEccC----chhHHHHHHHHHHcCCccccCCcc------CCcc---------cCcccc----cc---cCCceEEEeC
Q 018448 77 DIIVQSAR----PYGQRAVLKFAKYTHAHAIAGRHT------PGTF---------TNQMQT----SF---NEPRLLILTD 130 (355)
Q Consensus 77 ~ILfVsTr----~~~qraVlKfA~~tGa~~IagRwt------pGtL---------TNqiq~----~F---reP~LLVVtD 130 (355)
-++++|.. ....+.+.+++++.|...++.-.. -|.+ ++.-+. .+ ..-|+|+++.
T Consensus 37 PlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG 116 (171)
T PRK00945 37 PLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFIG 116 (171)
T ss_pred cEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEec
Confidence 36667663 345677899999999876543221 1222 222221 13 5889999998
Q ss_pred CCCC--chhHHHhh-hcCCCEEEEecCC
Q 018448 131 PRTD--HQPIKEAA-LGNIPTIAFCDTD 155 (355)
Q Consensus 131 P~~D--~qaI~EAs-~lnIPtIALcDTD 155 (355)
.+.. .|.|.--+ ..++-+|+||.--
T Consensus 117 ~~~~~~~~~l~~lk~f~~~~~~~~~~~y 144 (171)
T PRK00945 117 VTYYYASQGLSALKHFSPLKTITIDRYY 144 (171)
T ss_pred CCchhHHHHHHHHhhcCCceEEEecCCc
Confidence 6643 23443333 3468999999554
No 189
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.28 E-value=3.2e+02 Score=28.81 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCccccCCccCCcccCc--------------cc-ccccCC
Q 018448 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--------------MQ-TSFNEP 123 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsT--r-~~~qraVlKfA~~tGa~~IagRwtpGtLTNq--------------iq-~~FreP 123 (355)
+..++..|.+-+ .-++++|. + ......+.++|+++|+..++.----|.|-.. .. ..+++.
T Consensus 196 i~~~~~~l~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~a 273 (574)
T PRK06882 196 IKKALKALLVAK--KPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHES 273 (574)
T ss_pred HHHHHHHHHhCC--CCEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHHHhC
Confidence 555555554433 34667665 2 3467889999999999766542122333321 11 135799
Q ss_pred ceEEEeCCCCCch
Q 018448 124 RLLILTDPRTDHQ 136 (355)
Q Consensus 124 ~LLVVtDP~~D~q 136 (355)
|+|+++..+-+..
T Consensus 274 Dlvl~lG~~~~~~ 286 (574)
T PRK06882 274 DLILGIGVRFDDR 286 (574)
T ss_pred CEEEEECCCCCcc
Confidence 9999999875443
No 190
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.23 E-value=2.3e+02 Score=25.85 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=9.4
Q ss_pred HhhhcCCCEEEEe
Q 018448 140 EAALGNIPTIAFC 152 (355)
Q Consensus 140 EAs~lnIPtIALc 152 (355)
.....++|+.++|
T Consensus 65 ~i~~~~~PilGIC 77 (196)
T PRK13170 65 LIKACTQPVLGIC 77 (196)
T ss_pred HHHHcCCCEEEEC
Confidence 3344589999997
No 191
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=24.21 E-value=2.9e+02 Score=29.21 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCcccCcc---------------cccccCC
Q 018448 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEP 123 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi---------------q~~FreP 123 (355)
+..++..|.+-+ .-++++|.. ....+.+.++|+++|+..++.----|.|-... ...+++.
T Consensus 205 i~~~~~~L~~A~--rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~a 282 (571)
T PRK07710 205 IRKLVQAVSVAK--KPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYEC 282 (571)
T ss_pred HHHHHHHHHhCC--CCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhC
Confidence 455555554333 346666643 34578889999999997765322223332221 1135799
Q ss_pred ceEEEeCCCCC
Q 018448 124 RLLILTDPRTD 134 (355)
Q Consensus 124 ~LLVVtDP~~D 134 (355)
|+|+++..+-+
T Consensus 283 DlvL~lG~~~~ 293 (571)
T PRK07710 283 DLLINIGARFD 293 (571)
T ss_pred CEEEEeCCCCC
Confidence 99999998754
No 192
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=24.07 E-value=7.9e+02 Score=27.14 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=68.0
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcC---CccccCCccCCc--ccCcccccccCCceEEEeCCC-----CCchhHH
Q 018448 73 ENPGDIIVQSARPY---GQRAVLKFAKYTH---AHAIAGRHTPGT--FTNQMQTSFNEPRLLILTDPR-----TDHQPIK 139 (355)
Q Consensus 73 en~g~ILfVsTr~~---~qraVlKfA~~tG---a~~IagRwtpGt--LTNqiq~~FreP~LLVVtDP~-----~D~qaI~ 139 (355)
.+..++.|+|+... +.+.-+|+-+-+. ..|-.+-|..|- +++.. . .+|++.+. .+...++
T Consensus 524 ~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~-----~--pVi~l~~~~~~~e~~~~~~~ 596 (670)
T PTZ00394 524 KESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDET-----S--PVLAMCTHDKHFGLSKSAVQ 596 (670)
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCC-----c--eEEEEEcCCchHHHHHHHHH
Confidence 45678999998753 3444455544432 234456677773 33321 1 23333332 2234789
Q ss_pred HhhhcCCCEEEEecCCC-C---CCCceEEecCCCCCcchHHH--HHHHHHHHHHHhhcCC
Q 018448 140 EAALGNIPTIAFCDTDS-P---MRYVDIGIPANNKGKHSIGC--LFWLLARMVLQMRGTI 193 (355)
Q Consensus 140 EAs~lnIPtIALcDTDs-~---p~~VDypIP~NndS~~SI~L--i~~lLareVL~~rGti 193 (355)
|....+=.+|+|++.+. . .....+.||..++-...+-. .+++|+..+-..||..
T Consensus 597 evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~~l~pll~~iplQllAy~~A~~rG~d 656 (670)
T PTZ00394 597 QVKARGGAVVVFATEVDAELKAAASEIVLVPKTVDCLQCVVNVIPFQLLAYYMALLRGNN 656 (670)
T ss_pred HHHHcCCeEEEEECCCcchhcccCCcEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999986532 1 12256788876554444333 3588999998888874
No 193
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=23.93 E-value=68 Score=26.10 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=17.9
Q ss_pred CceEEEeC-CCCCchhHHHhhhcCCCEEEE
Q 018448 123 PRLLILTD-PRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 123 P~LLVVtD-P~~D~qaI~EAs~lnIPtIAL 151 (355)
...||+|+ -.-+...++-|...+||++.-
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~~i~vi~t 91 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKELGIPVIST 91 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHHT-EEEE-
T ss_pred CCEEEEeCCCCCCHHHHHHHHHCCCEEEEE
Confidence 46778885 556667778888899888753
No 194
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=23.87 E-value=75 Score=29.91 Aligned_cols=127 Identities=23% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHHHHHHHcCceecc--CCCCCCCcccceeeecCC--cee-eeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHH
Q 018448 17 ADIQMMLAAEVHLGT--KNCDFQMERYVFKRRNDG--IYI-INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAV 91 (355)
Q Consensus 17 ~dv~kLLaAgvHLG~--~n~npqMe~YIygrR~dG--I~I-INL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraV 91 (355)
.|+++.+++..-+.- ..-=-+.+.+++.-++.| .+| +||-+=+..=..|.+||+..-.+.. ++|||.. +
T Consensus 14 ~~le~~les~~~~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdG--IISTk~~----~ 87 (181)
T COG1954 14 KDLEKALESESQYVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDG--IISTKSN----V 87 (181)
T ss_pred HHHHHHhcCCCeEEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCe--eEEccHH----H
Confidence 588888888776652 000123334444433323 222 5665555555678889887633433 4677753 4
Q ss_pred HHHHHHcCCccccCCccCCc--ccCcc-cccccCCceEEEeCCCCCchhHHH-hhhcCCCEEE
Q 018448 92 LKFAKYTHAHAIAGRHTPGT--FTNQM-QTSFNEPRLLILTDPRTDHQPIKE-AALGNIPTIA 150 (355)
Q Consensus 92 lKfA~~tGa~~IagRwtpGt--LTNqi-q~~FreP~LLVVtDP~~D~qaI~E-As~lnIPtIA 150 (355)
.+-|+..|...|-.-|+=-+ +-|-+ +..-.+||++=|+-- -=...|+| ..+.++|+||
T Consensus 88 i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLPG-v~Pkvi~~i~~~t~~piIA 149 (181)
T COG1954 88 IKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLPG-VMPKVIKEITEKTHIPIIA 149 (181)
T ss_pred HHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcCc-ccHHHHHHHHHhcCCCEEe
Confidence 56678877776665443211 11110 112368998877643 33345555 3567899986
No 195
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.86 E-value=1.2e+02 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=25.5
Q ss_pred cCcccccccCCceEEEeCCCCCchhHHHhhh-cCCCEEEEe
Q 018448 113 TNQMQTSFNEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFC 152 (355)
Q Consensus 113 TNqiq~~FreP~LLVVtDP~~D~qaI~EAs~-lnIPtIALc 152 (355)
.|..+..--.|||||..+.......+.+... .||||+.+.
T Consensus 65 ~n~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~ 105 (262)
T cd01147 65 PNYEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLD 105 (262)
T ss_pred CCHHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEe
Confidence 3555555579999998765433223333433 889999885
No 196
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=23.79 E-value=7.6e+02 Score=24.89 Aligned_cols=113 Identities=9% Similarity=0.039 Sum_probs=59.0
Q ss_pred CCcEEEEccCch--hHHHHHHHHHH-cCCccccCCccCCcccCcccccc--cCCceEEEeCCCCC----chhHHHhhhc-
Q 018448 75 PGDIIVQSARPY--GQRAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSF--NEPRLLILTDPRTD----HQPIKEAALG- 144 (355)
Q Consensus 75 ~g~ILfVsTr~~--~qraVlKfA~~-tGa~~IagRwtpGtLTNqiq~~F--reP~LLVVtDP~~D----~qaI~EAs~l- 144 (355)
..+|.|+++... .-.+.+.+.++ +|.. +. -..+..|........ ....|+|.+...-+ -.|++.|+..
T Consensus 42 ~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~-v~-~~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~ 119 (372)
T TIGR02815 42 NLRIVLTGAGTSAFIGDALAPWLASHTGLN-VS-AVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQLL 119 (372)
T ss_pred CCEEEEEechHHHHHHHHHHHHHHHhcCCC-EE-EEeCcccccccccccCCCCCeEEEEEeCCcCcHHHHHHHHHHHHhC
Confidence 457999887642 23333334444 3332 21 123444332111111 12356666665433 3577888887
Q ss_pred -CCCEEEEecC-CCCCC-Cce-----EEecCC----CCCcchHH-HHHHHHHHHHHHh
Q 018448 145 -NIPTIAFCDT-DSPMR-YVD-----IGIPAN----NKGKHSIG-CLFWLLARMVLQM 189 (355)
Q Consensus 145 -nIPtIALcDT-Ds~p~-~VD-----ypIP~N----ndS~~SI~-Li~~lLareVL~~ 189 (355)
|+++|+|++. +|++. ..| +.|+++ .+|..+.. +...+++-..+..
T Consensus 120 ~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~e~gva~Tksft~~l~al~~l~~ 177 (372)
T TIGR02815 120 PECYHLVLTCNEEGALYRNAINRSNAFALLMPAESNDRSFAMTSSFSCMTLATLAVLG 177 (372)
T ss_pred CCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCccceeeeHHHHHHHHHHHHHHHc
Confidence 8999999875 56553 355 555544 45555553 5555555555543
No 197
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.45 E-value=1.8e+02 Score=25.95 Aligned_cols=21 Identities=5% Similarity=0.011 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhCCCcEEEEccC
Q 018448 63 QMAARVIVAIENPGDIIVQSAR 84 (355)
Q Consensus 63 ~lAa~~I~aIen~g~ILfVsTr 84 (355)
..+++.+.. ...++|.+++..
T Consensus 103 ~~~~~~l~~-~g~~~i~~v~~~ 123 (259)
T cd01542 103 YELGEYLAQ-QGHKNIAYLGVS 123 (259)
T ss_pred HHHHHHHHH-cCCCcEEEEcCC
Confidence 345555544 345789998643
No 198
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=23.37 E-value=69 Score=32.93 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=27.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNK 170 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~Nnd 170 (355)
.-||||+++|+.+-.-.-+|.-+-|-- .+-++|||+|.
T Consensus 294 ~~PDLI~lld~~Tg~piTTe~lkyG~r------------V~V~aIP~~~~ 331 (357)
T COG3535 294 TTPDLIVLLDLNTGLPITTESLKYGQR------------VVVIAIPAPDL 331 (357)
T ss_pred ecCceEEEEecCCCCccchHHhhcCcE------------EEEEEecCcch
Confidence 589999999998755555666665543 36689999974
No 199
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.34 E-value=1.1e+02 Score=27.30 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=28.7
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
...--.|||||..+-......+.+-...+|||+.+-.++.
T Consensus 55 ~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 55 AILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp HHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred HHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 3334689999999887566778888888999998755543
No 200
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=23.32 E-value=3.6e+02 Score=23.91 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=40.5
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC-CchhHHHhhhcCCCEEEE
Q 018448 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 75 ~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~-D~qaI~EAs~lnIPtIAL 151 (355)
.-++.++|..+... .+.+..+..+... .-+|.+ ...+ ...-++.=|++|.....+ -...+.||...|+|+|+-
T Consensus 220 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~-~v~~~g-~~~~-~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~ 293 (353)
T cd03811 220 DARLVILGDGPLRE-ELEALAKELGLAD-RVHFLG-FQSN-PYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVAT 293 (353)
T ss_pred CceEEEEcCCccHH-HHHHHHHhcCCCc-cEEEec-ccCC-HHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEc
Confidence 45677777655433 3445556555321 112333 2232 223345567666554321 245788999999999984
No 201
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=23.28 E-value=2.7e+02 Score=25.09 Aligned_cols=70 Identities=3% Similarity=0.040 Sum_probs=40.4
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CCC--C----chhHHHhhhcCCCEE
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT--D----HQPIKEAALGNIPTI 149 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~~--D----~qaI~EAs~lnIPtI 149 (355)
+||+|........-+....++.|.....-+...+. .......|.||++. |.. + ...|++ ...++|+.
T Consensus 3 ~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~-----~~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~~~~~PiL 76 (190)
T PRK06895 3 KLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLD-----LDEVENFSHILISPGPDVPRAYPQLFAMLER-YHQHKSIL 76 (190)
T ss_pred EEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccC-----hhHhccCCEEEECCCCCChHHhhHHHHHHHH-hcCCCCEE
Confidence 57888776655555777777778755444433221 11233567788773 441 1 223443 34589999
Q ss_pred EEe
Q 018448 150 AFC 152 (355)
Q Consensus 150 ALc 152 (355)
|+|
T Consensus 77 GIC 79 (190)
T PRK06895 77 GVC 79 (190)
T ss_pred EEc
Confidence 997
No 202
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=23.20 E-value=2.6e+02 Score=25.42 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=23.5
Q ss_pred cCCceEEEeCCC--CCchhHHHhhhcCCCEEEEe
Q 018448 121 NEPRLLILTDPR--TDHQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 121 reP~LLVVtDP~--~D~qaI~EAs~lnIPtIALc 152 (355)
+.+|.||+.... .....++++...|||+|.+-
T Consensus 53 ~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 53 QGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cCCCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 457888886543 33456899999999999873
No 203
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=23.15 E-value=3.1e+02 Score=28.72 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCcccCcc---------------cccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi---------------q~~Fre 122 (355)
.+..++..|.+-+ .-++++|.. ....+.+.++|+++|+..++.-.--|.|-... ...+.+
T Consensus 185 ~l~~~~~~L~~Ak--rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~ 262 (548)
T PRK08978 185 ELEQARALLAQAK--KPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQE 262 (548)
T ss_pred HHHHHHHHHHcCC--CCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHh
Confidence 4556665555433 346677753 34578889999999997766422224443211 012579
Q ss_pred CceEEEeCCCCCc
Q 018448 123 PRLLILTDPRTDH 135 (355)
Q Consensus 123 P~LLVVtDP~~D~ 135 (355)
.|+|+++..+-+.
T Consensus 263 aD~vl~lG~~~~~ 275 (548)
T PRK08978 263 CDLLIAVGARFDD 275 (548)
T ss_pred CCEEEEEcCCCCc
Confidence 9999999987543
No 204
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.78 E-value=2e+02 Score=27.20 Aligned_cols=109 Identities=14% Similarity=0.037 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHH--------Hhh--CCCcEEEEcc---CchhHH---HHHHHHHHcCCccccCCccCCcccCccc--
Q 018448 56 GKTWEKLQMAARVIV--------AIE--NPGDIIVQSA---RPYGQR---AVLKFAKYTHAHAIAGRHTPGTFTNQMQ-- 117 (355)
Q Consensus 56 ~kTwekL~lAa~~I~--------aIe--n~g~ILfVsT---r~~~qr---aVlKfA~~tGa~~IagRwtpGtLTNqiq-- 117 (355)
.+|-++++.|++-+- .++ +...|.++-. .++... .+.+.|+..|-..+.. .....-..+..
T Consensus 35 ~~tr~~V~~~a~elgY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~ 113 (342)
T PRK10014 35 TATGERVNQAIEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL-QGGKDGEQLAQRF 113 (342)
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEE-eCCCCHHHHHHHH
Confidence 477788887776652 121 2234444432 344443 3456666666432210 11111000000
Q ss_pred --ccccCCceEEEeCCCC-CchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 118 --TSFNEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 118 --~~FreP~LLVVtDP~~-D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
..-+.+|.+|+..... +...++++...+||+|.+ |...+...+++...
T Consensus 114 ~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~ 164 (342)
T PRK10014 114 STLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFA-SRASYLDDVDTVRP 164 (342)
T ss_pred HHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEE-ecCCCCCCCCEEEe
Confidence 1125689999876543 346678888899999976 65444444566443
No 205
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=22.77 E-value=1.9e+02 Score=26.68 Aligned_cols=92 Identities=9% Similarity=-0.011 Sum_probs=53.8
Q ss_pred HHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcc-ccCCc--cC-CcccCcccccccCCceEEEeCCCCCchhHHH
Q 018448 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRH--TP-GTFTNQMQTSFNEPRLLILTDPRTDHQPIKE 140 (355)
Q Consensus 65 Aa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~-IagRw--tp-GtLTNqiq~~FreP~LLVVtDP~~D~qaI~E 140 (355)
+..+|...++.+++.+||+.. +..+...++..|... ++.+- .+ |.+|-... ..+......+++
T Consensus 73 a~ell~~lk~~~~~~IVS~~~--~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-----------~~~~~K~~~l~~ 139 (203)
T TIGR02137 73 AVEFVDWLRERFQVVILSDTF--YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-----------RQKDPKRQSVIA 139 (203)
T ss_pred HHHHHHHHHhCCeEEEEeCCh--HHHHHHHHHHcCCchhhceeeEEecCCeeECeee-----------cCcchHHHHHHH
Confidence 445666664446888888874 346667788888642 22111 12 44443211 122223345666
Q ss_pred hhhcCCCEEEEecCCCCCCC---ceEEecCCC
Q 018448 141 AALGNIPTIAFCDTDSPMRY---VDIGIPANN 169 (355)
Q Consensus 141 As~lnIPtIALcDTDs~p~~---VDypIP~Nn 169 (355)
....+..++++-|+.+|+.. ++++|-.|-
T Consensus 140 l~~~~~~~v~vGDs~nDl~ml~~Ag~~ia~~a 171 (203)
T TIGR02137 140 FKSLYYRVIAAGDSYNDTTMLSEAHAGILFHA 171 (203)
T ss_pred HHhhCCCEEEEeCCHHHHHHHHhCCCCEEecC
Confidence 66677899999999887643 666666553
No 206
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=22.71 E-value=3.8e+02 Score=23.82 Aligned_cols=89 Identities=16% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC-Cchh
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQP 137 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~-D~qa 137 (355)
.+.+..|++.+......-.+.+++..+.. ..+.+.++..+.... -++.+ . .......++.=|++|...-.+ -...
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~-v~~~g-~-~~~~~~~~~~ad~~i~ps~~e~~~~~ 268 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPER-EALEALIKELGLEDR-VILLG-F-TKNIEEYYAKASIFVLTSRFEGFPMV 268 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCH-HHHHHHHHHcCCCCe-EEEcC-C-cchHHHHHHhCCEEEeCccccccCHH
Confidence 34455555554432233466677765543 334444555443211 12333 2 222333355667766554221 1467
Q ss_pred HHHhhhcCCCEEEE
Q 018448 138 IKEAALGNIPTIAF 151 (355)
Q Consensus 138 I~EAs~lnIPtIAL 151 (355)
+.||...|+|+|+-
T Consensus 269 ~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 269 LLEAMAFGLPVISF 282 (348)
T ss_pred HHHHHHcCCCEEEe
Confidence 99999999999974
No 207
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.63 E-value=2.5e+02 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.2
Q ss_pred chhHHHhhhcCCCEEEEecC
Q 018448 135 HQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 135 ~qaI~EAs~lnIPtIALcDT 154 (355)
.+.|+++...++|+.|+|..
T Consensus 61 ~~~i~~~~~~~~PilgIC~G 80 (200)
T PRK13143 61 RDVILEAARSGKPFLGICLG 80 (200)
T ss_pred HHHHHHHHHcCCCEEEECHH
Confidence 45678888889999999854
No 208
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=22.50 E-value=1.4e+02 Score=26.81 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=26.9
Q ss_pred CCceEEEeCCCC--CchhHHHhhhcCCCEEEEecCCCCC--CCceEE
Q 018448 122 EPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDSPM--RYVDIG 164 (355)
Q Consensus 122 eP~LLVVtDP~~--D~qaI~EAs~lnIPtIALcDTDs~p--~~VDyp 164 (355)
.+|.+|+..... ....+.++...|||+|.+ |++.+. ..+.+.
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~~~V 101 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRRPENAPKGVAYV 101 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCCCCCCCCeeEEE
Confidence 567777764432 346788889999999966 554332 344544
No 209
>PLN02275 transferase, transferring glycosyl groups
Probab=22.47 E-value=2e+02 Score=28.22 Aligned_cols=95 Identities=9% Similarity=-0.022 Sum_probs=55.7
Q ss_pred eHHHHHHHHHHHHHHHHH-h---------------hCC-CcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcc-cCc
Q 018448 54 NLGKTWEKLQMAARVIVA-I---------------ENP-GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF-TNQ 115 (355)
Q Consensus 54 NL~kTwekL~lAa~~I~a-I---------------en~-g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtL-TNq 115 (355)
...|-...|..|+..+.. + +++ -.++++|..+.- .-+++.++..|-.- -.+.+|.+ .+.
T Consensus 223 ~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~-~~l~~~~~~~~l~~--v~~~~~~~~~~~ 299 (371)
T PLN02275 223 TPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQK-AMYEEKISRLNLRH--VAFRTMWLEAED 299 (371)
T ss_pred eccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCH-HHHHHHHHHcCCCc--eEEEcCCCCHHH
Confidence 344556667777766532 1 112 356678877653 44566777766532 23455533 222
Q ss_pred ccccccCCceEEEeCCCC--C--chhHHHhhhcCCCEEEE
Q 018448 116 MQTSFNEPRLLILTDPRT--D--HQPIKEAALGNIPTIAF 151 (355)
Q Consensus 116 iq~~FreP~LLVVtDP~~--D--~qaI~EAs~lnIPtIAL 151 (355)
...-+..-|+.|+..+.. + ...+-||.-.|+|+|+.
T Consensus 300 ~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~ 339 (371)
T PLN02275 300 YPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAV 339 (371)
T ss_pred HHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEe
Confidence 333356778887643221 1 34689999999999995
No 210
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=22.35 E-value=2.2e+02 Score=24.93 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCch-hHHHhhhc-CCCEEE
Q 018448 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQ-PIKEAALG-NIPTIA 150 (355)
Q Consensus 75 ~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~q-aI~EAs~l-nIPtIA 150 (355)
...++++++.|...+-+....+.-+-..|-. -|+........=-.||++|.+|+..... .++|.... .||.+.
T Consensus 24 ~~~~~IvgaGPSL~~~i~~lk~~~~~~~iia---~~sa~~~L~~~gI~Pd~~v~~D~~~~~~~~~~~~~~~~~i~l~~ 98 (170)
T PF01973_consen 24 GKPAIIVGAGPSLDKNIELLKENRNKAIIIA---VNSALKALLKNGIKPDFVVSIDPQFWNYEHFKEINKEFDIPLFF 98 (170)
T ss_pred CCeEEEEecCCCHHHHHHHHHhcccCcEEEE---ecHHHHHHHHcCceEEEEEEcCCCcchHHHHhhcccccceEEEE
Confidence 4789999999987776655543332222210 1222222222235899999999854332 35555554 455444
No 211
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=22.34 E-value=2.7e+02 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=23.3
Q ss_pred cCCceEEEeCCCC--CchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~--D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+..... ....++++.. +||+|.+ |.+.
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~~ 89 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSDA 89 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCCC
Confidence 4578888764332 2467888888 9999987 4443
No 212
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.27 E-value=1.2e+02 Score=25.46 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCccc--------------Ccc-cccccCCce
Q 018448 64 MAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQM-QTSFNEPRL 125 (355)
Q Consensus 64 lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLT--------------Nqi-q~~FreP~L 125 (355)
.++..|..-++ -+++++.. ......+.++|+++|+..++.-.-.|.+- +.. ...+.+-|+
T Consensus 3 ~~~~~L~~A~r--P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 3 EAADLLSSAKR--PVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHH-SS--EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred HHHHHHHhCCC--EEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 34444444333 36666653 45788999999999998765433333332 111 112478899
Q ss_pred EEEeCCCC
Q 018448 126 LILTDPRT 133 (355)
Q Consensus 126 LVVtDP~~ 133 (355)
||++..+-
T Consensus 81 vl~iG~~~ 88 (137)
T PF00205_consen 81 VLAIGTRL 88 (137)
T ss_dssp EEEESSSS
T ss_pred EEEECCCC
Confidence 99998664
No 213
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.15 E-value=3e+02 Score=28.91 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCccccCCccCCcccCc---------------ccccccCC
Q 018448 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------------MQTSFNEP 123 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsT--r-~~~qraVlKfA~~tGa~~IagRwtpGtLTNq---------------iq~~FreP 123 (355)
+..++..|.+-+ .-+++++. + ....+.+.++|+.+|+..++.---.|.+.+- ....++++
T Consensus 194 i~~~~~~L~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~a 271 (557)
T PRK08199 194 LARLAELLARAE--RPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREA 271 (557)
T ss_pred HHHHHHHHHhCC--CCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhC
Confidence 455555555433 34666766 2 3457889999999999877531111222211 11235799
Q ss_pred ceEEEeCCCCC
Q 018448 124 RLLILTDPRTD 134 (355)
Q Consensus 124 ~LLVVtDP~~D 134 (355)
|+|+++..+-+
T Consensus 272 Dlvl~lG~~~~ 282 (557)
T PRK08199 272 DLVLAVGTRLG 282 (557)
T ss_pred CEEEEeCCCCc
Confidence 99999997643
No 214
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=21.77 E-value=3.5e+02 Score=28.42 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCcccCcc---------------cccccCC
Q 018448 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEP 123 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi---------------q~~FreP 123 (355)
+.+++..|.+-++ -+++++.. ....+.+.++|+++|+..++.---.|.+-... ...+.+.
T Consensus 191 i~~~~~~L~~Akr--Pvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~a 268 (558)
T TIGR00118 191 IKKAAELINLAKK--PVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHEC 268 (558)
T ss_pred HHHHHHHHHhCCC--cEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhC
Confidence 5566666654333 35666642 24678899999999997776432335444321 1125789
Q ss_pred ceEEEeCCCCC
Q 018448 124 RLLILTDPRTD 134 (355)
Q Consensus 124 ~LLVVtDP~~D 134 (355)
|+|++++.+-+
T Consensus 269 D~vl~lG~~~~ 279 (558)
T TIGR00118 269 DLIIAVGARFD 279 (558)
T ss_pred CEEEEECCCCC
Confidence 99999997754
No 215
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.63 E-value=1.9e+02 Score=25.97 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.5
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.+|+.....+ ...+.++...|||+|.+ |++.
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 90 (267)
T cd06322 54 KKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV-DIAA 90 (267)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE-cccC
Confidence 45788888754332 34578888889999987 5544
No 216
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.60 E-value=1.4e+02 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=24.7
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCCCceE
Q 018448 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVDI 163 (355)
Q Consensus 122 eP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~p~~VDy 163 (355)
.+|.||+.....+ .+.++++...+||+|.+ |+..+...+.+
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~ 99 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV-NDKLIPNATAF 99 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE-CCCCCCccceE
Confidence 4677766432211 35678888899999965 65443333444
No 217
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.56 E-value=1.1e+02 Score=27.69 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=25.9
Q ss_pred cCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 113 TNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 113 TNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
.|.....--.||+|+......+...+..-+..+|||+.+
T Consensus 49 ~n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~ 87 (235)
T cd01149 49 LSAEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTV 87 (235)
T ss_pred cCHHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEe
Confidence 355455557899998765443334555566889999866
No 218
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=21.47 E-value=1.6e+02 Score=25.63 Aligned_cols=119 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccCch------hHHHHHHHHHHcC----CccccCCccCCcccCcccccccC---CceEEEe
Q 018448 63 QMAARVIVAIENPGDIIVQSARPY------GQRAVLKFAKYTH----AHAIAGRHTPGTFTNQMQTSFNE---PRLLILT 129 (355)
Q Consensus 63 ~lAa~~I~aIen~g~ILfVsTr~~------~qraVlKfA~~tG----a~~IagRwtpGtLTNqiq~~Fre---P~LLVVt 129 (355)
..++..+.... .++|.+++.... ..+.+.+..+..| ...+.+.|............+.. |+.+++.
T Consensus 107 ~~~~~~l~~~g-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 185 (264)
T cd01537 107 YLAGEHLAEKG-HRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAA 185 (264)
T ss_pred HHHHHHHHHhc-CCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEc
Q ss_pred CCCCCchhHHHhhhcCC------CEEEEecCC----CCCCCceEEecCCCCCcchHHHHHHHH
Q 018448 130 DPRTDHQPIKEAALGNI------PTIAFCDTD----SPMRYVDIGIPANNKGKHSIGCLFWLL 182 (355)
Q Consensus 130 DP~~D~qaI~EAs~lnI------PtIALcDTD----s~p~~VDypIP~NndS~~SI~Li~~lL 182 (355)
+......+++.+...|+ +++++-++. +.+..-.+..+...-+.+.+.++.+++
T Consensus 186 ~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~~~~~~~~~~~ti~~~~~~~g~~~~~~~~~~~ 248 (264)
T cd01537 186 NDDMALGALRALREAGLRVPDDISVIGFDGTPEALLAGPPLTTVRQPPDELGRAAVELLLELL 248 (264)
T ss_pred CcHHHHHHHHHHHHhCCCCCCCeEEEeecCccHHHhhCCcceeEeCCHHHHHHHHHHHHHHHh
No 219
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.41 E-value=5.8e+02 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.2
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 120 FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
.+.=+++|-.|. -+++=|+-+|+|||+|.-..+
T Consensus 252 i~~a~l~I~~DS----gp~HlAaa~g~P~i~lfg~t~ 284 (319)
T TIGR02193 252 LAGADAVVGVDT----GLTHLAAALDKPTVTLYGATD 284 (319)
T ss_pred HHcCCEEEeCCC----hHHHHHHHcCCCEEEEECCCC
Confidence 467788886665 467778889999999986544
No 220
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.26 E-value=7.2e+02 Score=26.86 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=56.9
Q ss_pred CceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEcc-C--chhHHHHHHHHHHcCCccccC--C--ccC-----------C
Q 018448 49 GIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSA-R--PYGQRAVLKFAKYTHAHAIAG--R--HTP-----------G 110 (355)
Q Consensus 49 GI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsT-r--~~~qraVlKfA~~tGa~~Iag--R--wtp-----------G 110 (355)
..--|..+.. |.+++.-+.++. +..+.|..+ + +....+..+|+...|...+.. + +.+ |
T Consensus 77 ~~~~ISWDEA---l~~IA~kL~~~~-~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~ 152 (574)
T cd02767 77 HYRPISWDEA---FAEIAARLRALD-PDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVG 152 (574)
T ss_pred CEEEecHHHH---HHHHHHHHhhhC-CCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCC
Confidence 3444666543 333444444553 466777544 3 233446778999888754431 1 111 1
Q ss_pred cccCcccccccCCceEEEe--CCCCCch----hHHHhhhcCCCEEEEecCC
Q 018448 111 TFTNQMQTSFNEPRLLILT--DPRTDHQ----PIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 111 tLTNqiq~~FreP~LLVVt--DP~~D~q----aI~EAs~lnIPtIALcDTD 155 (355)
..|+.. .-+..-|+||+. ||..+|. .|+||++-|..+|.| |..
T Consensus 153 ~~t~~~-~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvI-dP~ 201 (574)
T cd02767 153 KGTVSL-EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVI-NPL 201 (574)
T ss_pred CCCCCH-HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEE-CCC
Confidence 122211 124678899888 5666653 468999999888866 653
No 221
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.26 E-value=3.1e+02 Score=24.65 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=23.9
Q ss_pred cCCceEEEeCCCC--CchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~--D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.||+.-... ....++++...|||+|.+ |.+.
T Consensus 56 ~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~-~~~~ 92 (271)
T cd06321 56 AKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAV-DVAA 92 (271)
T ss_pred hCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEe-cCCC
Confidence 4578887753221 245788998899999998 5543
No 222
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=21.13 E-value=3.3e+02 Score=28.97 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCccc--------------Ccc-cccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQM-QTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLT--------------Nqi-q~~Fre 122 (355)
.+.+++..|..-++ -++++|.. ....+.+.++|+++|+..++.-.--|.|- +.. ...+.+
T Consensus 192 ~i~~~~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~ 269 (586)
T PRK06276 192 QIKKAAELIAEAER--PVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTE 269 (586)
T ss_pred HHHHHHHHHHcCCC--eEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHHc
Confidence 45666666654333 35666642 35688899999999997665322223222 111 123689
Q ss_pred CceEEEeCCCCC
Q 018448 123 PRLLILTDPRTD 134 (355)
Q Consensus 123 P~LLVVtDP~~D 134 (355)
.|+|++++.+-+
T Consensus 270 aD~vl~lG~~~~ 281 (586)
T PRK06276 270 SDVLIAIGCRFS 281 (586)
T ss_pred CCEEEEECCCCC
Confidence 999999997743
No 223
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=20.96 E-value=2.5e+02 Score=25.44 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHhhCC-CcEEEEccCch-hHHHHHHHHHHcCCccccCCccCCcccCcccc--cccCCceEEEeCCCCCchhHHHh
Q 018448 66 ARVIVAIENP-GDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT--SFNEPRLLILTDPRTDHQPIKEA 141 (355)
Q Consensus 66 a~~I~aIen~-g~ILfVsTr~~-~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~--~FreP~LLVVtDP~~D~qaI~EA 141 (355)
+.++..+.+. -.|++++.... .+..+.+..+......++ +.|. ||-.+. -++.-+++|-.|. -+++=|
T Consensus 127 ~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~l~e~~ali~~a~~~I~~Dt----g~~HlA 198 (247)
T PF01075_consen 127 AELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVIN---LAGK-TSLRELAALISRADLVIGNDT----GPMHLA 198 (247)
T ss_dssp HHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEE---ETTT-S-HHHHHHHHHTSSEEEEESS----HHHHHH
T ss_pred HHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEe---ecCC-CCHHHHHHHHhcCCEEEecCC----hHHHHH
Confidence 3445556433 47888888776 455555555544322111 2233 232222 2578899998887 466777
Q ss_pred hhcCCCEEEEecC
Q 018448 142 ALGNIPTIAFCDT 154 (355)
Q Consensus 142 s~lnIPtIALcDT 154 (355)
.-+|+|+|+|--.
T Consensus 199 ~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 199 AALGTPTVALFGP 211 (247)
T ss_dssp HHTT--EEEEESS
T ss_pred HHHhCCEEEEecC
Confidence 8899999999744
No 224
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.93 E-value=3e+02 Score=28.13 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=35.0
Q ss_pred cCCceEEEeCC-CCCchhHHHhhhcCCCEEEEecCCCCC--CCceEEecCCCCCcchHHHH
Q 018448 121 NEPRLLILTDP-RTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIGCL 178 (355)
Q Consensus 121 reP~LLVVtDP-~~D~qaI~EAs~lnIPtIALcDTDs~p--~~VDypIP~NndS~~SI~Li 178 (355)
..+|+||+.-- ..++-.+++|...|||+++-.+--... ..--++|=|- +|+.+..-|
T Consensus 65 ~~~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGT-nGKTTTt~l 124 (461)
T PRK00421 65 KDADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGT-HGKTTTTSL 124 (461)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECC-CCHHHHHHH
Confidence 35787665541 256778999999999999754331111 1135788785 466555443
No 225
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=20.86 E-value=1.6e+02 Score=31.27 Aligned_cols=79 Identities=9% Similarity=0.036 Sum_probs=41.5
Q ss_pred CCCcEEEE-ccCchhHHHHHHHHHHcCCccccCCccCCcccCcc-cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 74 NPGDIIVQ-SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 74 n~g~ILfV-sTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi-q~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
-|+.+|++ .....+...+.+++++.|...-.=.|.|.+ .... ...++.-|+..=+=|-..+.-..||..+|+|+|++
T Consensus 312 vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~-~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl 390 (468)
T PF13844_consen 312 VPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVA-PREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTL 390 (468)
T ss_dssp STTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB-
T ss_pred CCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCC-CHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEec
Confidence 36666654 444456777888888888763211222211 1111 12356778765555778899999999999999998
Q ss_pred ec
Q 018448 152 CD 153 (355)
Q Consensus 152 cD 153 (355)
.-
T Consensus 391 ~G 392 (468)
T PF13844_consen 391 PG 392 (468)
T ss_dssp --
T ss_pred cC
Confidence 53
No 226
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.86 E-value=3.8e+02 Score=28.46 Aligned_cols=122 Identities=19% Similarity=0.224 Sum_probs=70.1
Q ss_pred CceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEE
Q 018448 49 GIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128 (355)
Q Consensus 49 GI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVV 128 (355)
.|.|+=|.+|=. -+++++. +.+.+|.+...|+.......+.....|..+..|++.- ......|++ |
T Consensus 9 kv~V~GLG~sG~---a~a~~L~--~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--------~~~~~~d~v-V 74 (448)
T COG0771 9 KVLVLGLGKSGL---AAARFLL--KLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--------EDLAEFDLV-V 74 (448)
T ss_pred EEEEEecccccH---HHHHHHH--HCCCeEEEEcCCCCccchhhhhhhccCceeecCccch--------hccccCCEE-E
Confidence 466777776642 3334433 3567777777776553222223344555555554432 123445654 5
Q ss_pred eCCC--CCchhHHHhhhcCCCEEEEe----cCC-CCCCCceEEecCCCCCcchHHHHHHHHHHHHH
Q 018448 129 TDPR--TDHQPIKEAALGNIPTIAFC----DTD-SPMRYVDIGIPANNKGKHSIGCLFWLLARMVL 187 (355)
Q Consensus 129 tDP~--~D~qaI~EAs~lnIPtIALc----DTD-s~p~~VDypIP~NndS~~SI~Li~~lLareVL 187 (355)
.+|. -+|-.|.+|...|||+++=+ ... ..| -++|=|-|--.....|+..||...-.
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p---~vaITGTNGKTTTTsli~~~l~~~G~ 137 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAP---IVAITGTNGKTTTTSLIAHLLKAAGL 137 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCC---EEEEECCCchHHHHHHHHHHHHhcCC
Confidence 6654 67888999999999999633 332 222 67888865444445666655554443
No 227
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.74 E-value=2.8e+02 Score=29.23 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHcCCccccCCccCCcccCc---------------ccccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------------MQTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr~---~~qraVlKfA~~tGa~~IagRwtpGtLTNq---------------iq~~Fre 122 (355)
.+..++..|..-++ -++++|..- ...+.+.++|+++|+..++.----|.+-.. ....+.+
T Consensus 200 ~i~~~~~~L~~Akr--PvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~ 277 (564)
T PRK08155 200 SIRDAAAMINAAKR--PVLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQE 277 (564)
T ss_pred HHHHHHHHHHhCCC--CEEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHh
Confidence 35555555554333 366666432 467889999999999776521111222111 1123578
Q ss_pred CceEEEeCCCCCc
Q 018448 123 PRLLILTDPRTDH 135 (355)
Q Consensus 123 P~LLVVtDP~~D~ 135 (355)
+|+|+++..+-+.
T Consensus 278 aDlvl~lG~~~~~ 290 (564)
T PRK08155 278 ADLLIVLGARFDD 290 (564)
T ss_pred CCEEEEECCCCCc
Confidence 9999999987543
No 228
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=20.71 E-value=4.3e+02 Score=28.16 Aligned_cols=93 Identities=25% Similarity=0.248 Sum_probs=54.0
Q ss_pred HHHHHHHHHHH-HhhCCCcEEEEccCc-h--h-HHHHHHHHHHcCC---ccccCCccC--CcccCcccc-cccCCceEEE
Q 018448 60 EKLQMAARVIV-AIENPGDIIVQSARP-Y--G-QRAVLKFAKYTHA---HAIAGRHTP--GTFTNQMQT-SFNEPRLLIL 128 (355)
Q Consensus 60 ekL~lAa~~I~-aIen~g~ILfVsTr~-~--~-qraVlKfA~~tGa---~~IagRwtp--GtLTNqiq~-~FreP~LLVV 128 (355)
..+..|+..|. +|++..+|++++-.. . + .-++.++-.+.|. .++..|... |...+.+.. .-..++++|+
T Consensus 38 ~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI~ 117 (539)
T TIGR00644 38 KDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLIIT 117 (539)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEEE
Confidence 34556666655 467888999887753 1 2 2333455555664 334445544 322221111 1135799999
Q ss_pred eCCC-CCchhHHHhhhcCCCEEEEec
Q 018448 129 TDPR-TDHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 129 tDP~-~D~qaI~EAs~lnIPtIALcD 153 (355)
+|.. .++..+..+...++.+|-+ |
T Consensus 118 vD~G~~~~~~~~~~~~~g~~vIvi-D 142 (539)
T TIGR00644 118 VDNGISAHEEIDYAKELGIDVIVT-D 142 (539)
T ss_pred eCCCcccHHHHHHHHhcCCCEEEE-C
Confidence 9966 5566777777778888654 5
No 229
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=20.69 E-value=2.6e+02 Score=26.39 Aligned_cols=59 Identities=25% Similarity=0.054 Sum_probs=38.6
Q ss_pred CCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 132 RTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 132 ~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
.-|..|.+-|...+-+||++.-+. +|..-|..| +-|.++|.+..|-+-.+.|....|.-
T Consensus 84 GiD~~ah~~al~~~g~tIaVl~~g-----ld~~yp~~n----------~~l~~~i~~~gglliSe~p~~~~~~~ 142 (220)
T TIGR00732 84 GIDGIAHKAALKVNGRTIAVLGTG-----LDQIYPRQN----------SKLAAKIAENGGLLLSEYPPDTKPIK 142 (220)
T ss_pred hHHHHHHHHHHHcCCCEEEEECCC-----CccCCchhh----------HHHHHHHHHcCCEEEEecCCCCCCCc
Confidence 357788888888999999998764 344445443 35667777655455445565555544
No 230
>PLN02501 digalactosyldiacylglycerol synthase
Probab=20.67 E-value=2.8e+02 Score=31.65 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=57.7
Q ss_pred eeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCC
Q 018448 53 INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (355)
Q Consensus 53 INL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~ 132 (355)
+.-.|=+..|..|+..+..-...-.+++||..+.-. .+++.+...|.. + .|+||. +.....+..-|+.|.....
T Consensus 555 La~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~re-eLe~la~eLgL~-V--~FLG~~--dd~~~lyasaDVFVlPS~s 628 (794)
T PLN02501 555 MVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAH-EVQRAAKRLDLN-L--NFLKGR--DHADDSLHGYKVFINPSIS 628 (794)
T ss_pred ccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHH-HHHHHHHHcCCE-E--EecCCC--CCHHHHHHhCCEEEECCCc
Confidence 345566667777766554321235677888887544 456666666653 2 466552 2222335566766665543
Q ss_pred CC-chhHHHhhhcCCCEEEEe
Q 018448 133 TD-HQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 133 ~D-~qaI~EAs~lnIPtIALc 152 (355)
+. -.++.||.-+|+|||+--
T Consensus 629 EgFGlVlLEAMA~GlPVVATd 649 (794)
T PLN02501 629 DVLCTATAEALAMGKFVVCAD 649 (794)
T ss_pred ccchHHHHHHHHcCCCEEEec
Confidence 22 467899999999999973
No 231
>PRK05637 anthranilate synthase component II; Provisional
Probab=20.47 E-value=2.9e+02 Score=25.73 Aligned_cols=72 Identities=15% Similarity=0.250 Sum_probs=34.3
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CCCCchh-----HHHhhhcCCCEEE
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRTDHQP-----IKEAALGNIPTIA 150 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~~D~qa-----I~EAs~lnIPtIA 150 (355)
+|++|.........+.+.-++.|.....-++- +......-..|+.||+.. |..-..+ +-+...-++|++|
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~----~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLG 78 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT----VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLG 78 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC----CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEE
Confidence 46667665444444444444556543322221 111111123678888753 4322121 2222233799999
Q ss_pred Ee
Q 018448 151 FC 152 (355)
Q Consensus 151 Lc 152 (355)
+|
T Consensus 79 IC 80 (208)
T PRK05637 79 IC 80 (208)
T ss_pred Ec
Confidence 97
No 232
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=20.27 E-value=89 Score=32.27 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=40.4
Q ss_pred cCCceEEEeCCC--------------------------CCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcch
Q 018448 121 NEPRLLILTDPR--------------------------TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (355)
Q Consensus 121 reP~LLVVtDP~--------------------------~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~S 174 (355)
..||+||++|.. +.+..|.| ..+||||||+- -|..||.+.-.|| +
T Consensus 173 ~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAIG----VPTVVdA~tI~~D----t 243 (358)
T TIGR01441 173 IKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSK-KTLGVPVIAVG----VPTVVDAVTIASD----T 243 (358)
T ss_pred hCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCH-HHcCCCEEEEc----CCeeechHHHHHH----H
Confidence 689999999932 33667777 44799999993 3556887777775 6
Q ss_pred HHHHHHHHHHHH
Q 018448 175 IGCLFWLLARMV 186 (355)
Q Consensus 175 I~Li~~lLareV 186 (355)
|.+++.-|.++.
T Consensus 244 id~~l~~~~~~~ 255 (358)
T TIGR01441 244 IDYVLKHFGREV 255 (358)
T ss_pred HHHHHHHHHhhh
Confidence 666666665554
No 233
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.27 E-value=2.2e+02 Score=25.39 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=26.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~N 168 (355)
+.+|.||++....+. ........++|+|.+ |.+.+...+++..+-|
T Consensus 55 ~~~dgiii~~~~~~~-~~~~~~~~~ipvv~~-~~~~~~~~~~~v~~d~ 100 (269)
T cd06288 55 HRVDGIIYATMYHRE-VTLPPELLSVPTVLL-NCYDADGALPSVVPDE 100 (269)
T ss_pred cCCCEEEEecCCCCh-hHHHHHhcCCCEEEE-ecccCCCCCCeEEEcc
Confidence 467888887533222 122334569999988 5544434456666544
No 234
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.03 E-value=3.9e+02 Score=28.50 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCccccCCccCCccc--------------Cccc-ccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQMQ-TSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr---~~~qraVlKfA~~tGa~~IagRwtpGtLT--------------Nqiq-~~Fre 122 (355)
.+..++..|.+-++ -++++|.. ....+.+.++|+.+|+..++.----|.|- +... ..+.+
T Consensus 210 ~i~~~~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~ 287 (587)
T PRK06965 210 QIRKAVSLLLSAKR--PYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQH 287 (587)
T ss_pred HHHHHHHHHHhcCC--CEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHh
Confidence 46666666665433 46666653 35678899999999987654311123322 1111 13578
Q ss_pred CceEEEeCCCCC
Q 018448 123 PRLLILTDPRTD 134 (355)
Q Consensus 123 P~LLVVtDP~~D 134 (355)
.|+||+++.+-+
T Consensus 288 aDlvl~lG~~~~ 299 (587)
T PRK06965 288 CDVLIAIGARFD 299 (587)
T ss_pred CCEEEEECCCCc
Confidence 999999998754
Done!