Query 018448
Match_columns 355
No_of_seqs 232 out of 1328
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_A 40S ribosomal protein S 100.0 1.1E-96 4E-101 708.1 15.7 277 1-289 1-284 (305)
2 3u5c_A 40S ribosomal protein S 100.0 2.7E-89 9.2E-94 644.8 20.9 242 8-254 3-245 (252)
3 2zkq_b 40S ribosomal protein S 100.0 7.4E-87 2.5E-91 639.9 18.1 249 9-257 5-254 (295)
4 3bch_A 40S ribosomal protein S 100.0 3.7E-84 1.2E-88 610.2 20.6 222 1-222 30-251 (253)
5 2xzm_B RPS0E; ribosome, transl 100.0 4.1E-84 1.4E-88 606.7 19.5 214 11-224 2-216 (241)
6 3j20_B 30S ribosomal protein S 100.0 1.1E-72 3.6E-77 517.7 21.1 192 17-209 7-198 (202)
7 1vi6_A 30S ribosomal protein S 100.0 7.4E-72 2.5E-76 514.1 18.4 191 17-213 11-201 (208)
8 2vqe_B 30S ribosomal protein S 100.0 1.2E-62 4.1E-67 464.8 9.3 180 17-199 5-233 (256)
9 3bbn_B Ribosomal protein S2; s 100.0 7.1E-61 2.4E-65 446.9 14.4 175 17-192 4-227 (231)
10 3r8n_B 30S ribosomal protein S 100.0 6.6E-62 2.3E-66 450.5 4.0 168 22-190 1-217 (218)
11 2yva_A DNAA initiator-associat 95.3 0.17 6E-06 43.3 11.2 134 54-188 15-188 (196)
12 1m3s_A Hypothetical protein YC 94.8 0.23 7.7E-06 42.3 10.5 120 62-192 27-173 (186)
13 2i2w_A Phosphoheptose isomeras 94.1 0.47 1.6E-05 41.7 11.3 108 60-169 48-184 (212)
14 1vim_A Hypothetical protein AF 93.6 0.5 1.7E-05 41.2 10.4 88 72-167 44-140 (200)
15 1nri_A Hypothetical protein HI 93.5 0.37 1.3E-05 45.3 9.9 148 54-205 49-236 (306)
16 3etn_A Putative phosphosugar i 93.4 1.1 3.6E-05 39.9 12.3 129 61-192 43-196 (220)
17 1x92_A APC5045, phosphoheptose 93.0 1.4 4.8E-05 37.7 12.1 117 54-171 19-171 (199)
18 1jeo_A MJ1247, hypothetical pr 92.9 0.93 3.2E-05 38.2 10.7 113 72-192 37-167 (180)
19 2xbl_A Phosphoheptose isomeras 92.7 2.8 9.4E-05 35.6 13.5 109 60-169 32-169 (198)
20 3trj_A Phosphoheptose isomeras 92.2 1.7 5.8E-05 38.2 11.8 108 61-172 31-173 (201)
21 3fxa_A SIS domain protein; str 91.9 0.77 2.6E-05 39.6 9.1 73 120-192 90-180 (201)
22 3sho_A Transcriptional regulat 91.8 0.52 1.8E-05 39.9 7.7 126 54-187 16-164 (187)
23 2xhz_A KDSD, YRBH, arabinose 5 91.0 1 3.5E-05 38.0 8.7 89 76-167 50-147 (183)
24 2a3n_A Putative glucosamine-fr 90.2 0.95 3.2E-05 43.1 8.7 137 52-191 29-178 (355)
25 3knz_A Putative sugar binding 89.8 2 6.9E-05 41.5 10.7 121 72-195 47-185 (366)
26 1tk9_A Phosphoheptose isomeras 89.1 4.9 0.00017 33.7 11.4 110 60-170 26-164 (188)
27 2aml_A SIS domain protein; 469 88.2 2.3 8E-05 40.8 9.9 75 120-194 95-185 (373)
28 3jx9_A Putative phosphoheptose 86.8 3.9 0.00013 36.1 9.6 98 58-164 20-127 (170)
29 3g68_A Putative phosphosugar i 86.2 4.5 0.00015 38.6 10.5 120 73-195 32-170 (352)
30 3cvj_A Putative phosphoheptose 85.8 2.9 9.8E-05 37.3 8.4 94 60-154 26-144 (243)
31 3eua_A Putative fructose-amino 76.1 12 0.00041 35.2 9.3 127 62-191 13-153 (329)
32 3fkj_A Putative phosphosugar i 73.5 18 0.00062 34.4 9.9 129 60-191 25-171 (347)
33 3tbf_A Glucosamine--fructose-6 71.1 6.7 0.00023 37.8 6.3 120 72-194 51-189 (372)
34 3hba_A Putative phosphosugar i 69.8 31 0.001 32.7 10.6 94 73-168 40-142 (334)
35 1moq_A Glucosamine 6-phosphate 68.3 11 0.00037 35.9 7.1 72 120-191 97-184 (368)
36 2xci_A KDO-transferase, 3-deox 67.8 15 0.0005 34.6 7.9 91 59-150 209-307 (374)
37 3dfz_A SIRC, precorrin-2 dehyd 67.6 7.2 0.00025 35.5 5.4 89 48-154 32-123 (223)
38 2poc_A D-fructose-6- PH, isome 62.6 9.2 0.00032 36.5 5.4 72 121-192 96-182 (367)
39 3fj1_A Putative phosphosugar i 60.7 49 0.0017 31.3 10.1 94 73-168 41-143 (344)
40 1mp1_A Ser/Arg-related nuclear 57.2 7.2 0.00024 32.5 3.1 39 309-347 41-89 (111)
41 3gv0_A Transcriptional regulat 52.8 23 0.00078 31.1 5.9 45 121-166 65-109 (288)
42 2vsy_A XCC0866; transferase, g 51.1 35 0.0012 33.0 7.4 91 60-151 391-482 (568)
43 2zj3_A Glucosamine--fructose-6 49.6 12 0.00043 35.8 3.9 48 121-168 106-159 (375)
44 2bfw_A GLGA glycogen synthase; 48.7 39 0.0013 27.6 6.4 89 59-151 52-145 (200)
45 2bpl_A Glucosamine--fructose-6 48.6 30 0.001 35.3 6.8 119 72-194 289-426 (608)
46 2jjm_A Glycosyl transferase, g 43.3 1.1E+02 0.0036 27.9 9.0 101 55-161 222-323 (394)
47 3cs3_A Sugar-binding transcrip 42.8 54 0.0019 28.4 6.7 43 122-165 57-99 (277)
48 3m9w_A D-xylose-binding peripl 42.4 67 0.0023 28.3 7.3 41 121-162 57-99 (313)
49 3uow_A GMP synthetase; structu 40.5 61 0.0021 33.1 7.5 76 74-153 6-91 (556)
50 1gpw_B Amidotransferase HISH; 40.4 58 0.002 27.7 6.4 33 121-153 41-85 (201)
51 3hz7_A Uncharacterized protein 40.1 30 0.001 26.8 4.1 52 62-113 15-67 (87)
52 3qk7_A Transcriptional regulat 39.9 43 0.0015 29.4 5.6 45 121-166 64-108 (294)
53 1pjq_A CYSG, siroheme synthase 39.4 55 0.0019 32.2 6.8 98 65-173 24-134 (457)
54 1ka9_H Imidazole glycerol phos 38.9 73 0.0025 27.2 6.8 33 121-153 39-83 (200)
55 3qhp_A Type 1 capsular polysac 38.8 30 0.001 27.4 4.0 88 58-152 16-106 (166)
56 3s2u_A UDP-N-acetylglucosamine 38.0 37 0.0013 31.7 5.1 35 121-156 91-125 (365)
57 4gyw_A UDP-N-acetylglucosamine 37.8 39 0.0013 35.3 5.7 104 40-152 523-629 (723)
58 3lvj_C Sulfurtransferase TUSA; 37.7 46 0.0016 25.3 4.7 50 63-112 25-74 (82)
59 3knz_A Putative sugar binding 37.5 1.6E+02 0.0055 28.1 9.6 114 73-193 221-347 (366)
60 3bbl_A Regulatory protein of L 37.3 49 0.0017 28.9 5.6 43 121-164 63-105 (287)
61 2rgy_A Transcriptional regulat 37.3 66 0.0023 28.1 6.4 43 121-164 66-108 (290)
62 3d8u_A PURR transcriptional re 36.5 45 0.0015 28.6 5.1 43 121-164 58-100 (275)
63 3egc_A Putative ribose operon 36.3 42 0.0014 29.3 4.9 45 121-166 63-107 (291)
64 3brq_A HTH-type transcriptiona 36.3 87 0.003 26.9 6.9 43 121-164 76-119 (296)
65 3r75_A Anthranilate/para-amino 36.1 71 0.0024 33.4 7.3 71 75-152 446-528 (645)
66 3c3j_A Putative tagatose-6-pho 35.7 1.3E+02 0.0045 28.6 8.7 71 121-191 102-190 (384)
67 3h5t_A Transcriptional regulat 35.4 46 0.0016 30.4 5.2 45 121-166 127-171 (366)
68 3k4h_A Putative transcriptiona 35.3 49 0.0017 28.7 5.1 44 121-165 68-112 (292)
69 3m3p_A Glutamine amido transfe 35.2 76 0.0026 28.9 6.6 74 75-152 3-89 (250)
70 3huu_A Transcription regulator 34.9 51 0.0017 29.1 5.2 45 121-166 82-126 (305)
71 3jy6_A Transcriptional regulat 34.8 58 0.002 28.2 5.5 44 121-166 62-105 (276)
72 1f0k_A MURG, UDP-N-acetylgluco 34.7 75 0.0026 28.3 6.4 84 56-151 196-280 (364)
73 2e5f_A Hypothetical protein PH 34.7 38 0.0013 31.6 4.5 65 122-186 79-153 (325)
74 1pav_A Hypothetical protein TA 34.4 38 0.0013 25.2 3.8 50 64-113 22-71 (78)
75 3cf4_G Acetyl-COA decarboxylas 34.3 69 0.0023 27.1 5.8 58 76-133 36-118 (170)
76 2fep_A Catabolite control prot 34.3 55 0.0019 28.7 5.3 43 121-164 71-113 (289)
77 2f9f_A First mannosyl transfer 34.2 40 0.0014 27.6 4.1 89 56-151 35-127 (177)
78 3md9_A Hemin-binding periplasm 34.0 34 0.0012 29.9 3.9 33 119-151 56-88 (255)
79 3rot_A ABC sugar transporter, 33.8 51 0.0017 28.9 5.1 45 121-166 60-110 (297)
80 1j5x_A Glucosamine-6-phosphate 33.7 70 0.0024 30.0 6.3 93 72-167 49-151 (342)
81 3odp_A Putative tagatose-6-pho 33.5 3.2E+02 0.011 26.3 11.1 119 74-199 229-375 (393)
82 3kjx_A Transcriptional regulat 33.4 1E+02 0.0035 27.8 7.1 102 56-158 39-160 (344)
83 1tzb_A Glucose-6-phosphate iso 33.0 1.2E+02 0.004 27.8 7.6 44 121-165 78-125 (302)
84 3o74_A Fructose transport syst 32.8 63 0.0021 27.5 5.4 45 121-166 57-102 (272)
85 3l6u_A ABC-type sugar transpor 32.6 72 0.0025 27.6 5.8 46 121-167 63-111 (293)
86 1jdq_A TM006 protein, hypothet 32.3 55 0.0019 26.0 4.5 49 64-112 42-91 (98)
87 1tjy_A Sugar transport protein 32.2 42 0.0014 30.1 4.3 36 121-157 59-96 (316)
88 3k9c_A Transcriptional regulat 32.2 54 0.0018 28.7 4.9 44 121-166 65-108 (289)
89 1x4q_A U4/U6 small nuclear rib 31.6 52 0.0018 26.2 4.3 43 308-350 33-83 (92)
90 4gud_A Imidazole glycerol phos 31.6 58 0.002 27.9 4.9 33 121-153 39-80 (211)
91 3i0z_A Putative tagatose-6-pho 31.5 3.6E+02 0.012 25.9 11.6 118 74-198 229-369 (389)
92 2gek_A Phosphatidylinositol ma 31.3 62 0.0021 29.2 5.3 89 57-151 222-313 (406)
93 3hcw_A Maltose operon transcri 31.2 59 0.002 28.5 5.1 36 121-157 67-102 (295)
94 2r7a_A Bacterial heme binding 31.0 40 0.0014 29.4 3.9 35 117-151 54-88 (256)
95 3e3m_A Transcriptional regulat 29.4 1.2E+02 0.004 27.5 6.9 36 121-156 125-160 (355)
96 3hgt_A HDA1 complex subunit 3; 29.1 1.6E+02 0.0053 28.5 7.9 130 56-193 105-272 (328)
97 2pln_A HP1043, response regula 28.9 77 0.0026 24.0 4.8 74 74-155 17-96 (137)
98 3kke_A LACI family transcripti 28.8 75 0.0026 28.0 5.3 43 121-166 70-113 (303)
99 4dad_A Putative pilus assembly 28.8 1.1E+02 0.0038 23.4 5.7 80 74-156 19-106 (146)
100 3fro_A GLGA glycogen synthase; 28.0 1E+02 0.0036 27.8 6.2 90 58-151 266-360 (439)
101 4hwg_A UDP-N-acetylglucosamine 27.1 42 0.0014 32.1 3.5 33 121-154 93-125 (385)
102 3oy2_A Glycosyltransferase B73 26.9 1.2E+02 0.0042 27.5 6.6 96 56-151 196-303 (413)
103 1n2z_A Vitamin B12 transport p 26.4 43 0.0015 29.1 3.2 31 121-151 56-86 (245)
104 3brs_A Periplasmic binding pro 26.4 1.5E+02 0.0052 25.4 6.8 35 121-156 64-100 (289)
105 2r79_A Periplasmic binding pro 26.4 55 0.0019 29.3 4.0 32 120-151 57-88 (283)
106 2iuy_A Avigt4, glycosyltransfe 26.4 1.2E+02 0.004 26.9 6.2 87 55-151 173-271 (342)
107 3clk_A Transcription regulator 26.1 71 0.0024 27.8 4.6 42 121-164 64-105 (290)
108 3lq1_A 2-succinyl-5-enolpyruvy 26.0 1.1E+02 0.0039 30.6 6.6 104 61-168 213-340 (578)
109 2h3h_A Sugar ABC transporter, 25.4 97 0.0033 27.3 5.4 44 121-165 56-102 (313)
110 3tbf_A Glucosamine--fructose-6 25.1 4.4E+02 0.015 24.9 12.6 116 73-193 225-358 (372)
111 3gbv_A Putative LACI-family tr 24.7 72 0.0024 27.6 4.3 46 121-167 68-116 (304)
112 3psh_A Protein HI_1472; substr 24.3 67 0.0023 29.2 4.2 34 120-154 82-115 (326)
113 4hv4_A UDP-N-acetylmuramate--L 24.0 1.3E+02 0.0043 29.8 6.5 58 120-178 79-139 (494)
114 2x6q_A Trehalose-synthase TRET 23.9 1.8E+02 0.0061 26.5 7.1 92 57-151 244-345 (416)
115 3c3k_A Alanine racemase; struc 23.9 77 0.0026 27.6 4.4 43 121-165 63-105 (285)
116 3l7n_A Putative uncharacterize 23.9 1.3E+02 0.0045 26.5 6.0 65 84-152 10-91 (236)
117 2hsg_A Glucose-resistance amyl 23.1 90 0.0031 27.9 4.8 107 56-164 31-157 (332)
118 2o20_A Catabolite control prot 22.9 1E+02 0.0035 27.5 5.2 43 121-164 118-160 (332)
119 2h0a_A TTHA0807, transcription 22.7 1E+02 0.0036 26.3 4.9 36 121-157 54-89 (276)
120 2fn9_A Ribose ABC transporter, 22.2 1.2E+02 0.0042 26.1 5.3 34 121-155 57-92 (290)
121 3jte_A Response regulator rece 22.1 1.4E+02 0.0046 22.7 5.1 73 76-155 4-87 (143)
122 2iks_A DNA-binding transcripti 22.1 88 0.003 27.2 4.4 44 121-165 75-119 (293)
123 2zxr_A Single-stranded DNA spe 22.1 2.1E+02 0.0072 30.2 7.9 93 62-155 58-161 (666)
124 2a9v_A GMP synthase; structura 21.9 1.4E+02 0.0047 26.0 5.6 70 77-152 15-92 (212)
125 4fmw_A RNA (guanine-9-)-methyl 21.8 93 0.0032 27.8 4.5 34 55-88 38-71 (197)
126 3ksm_A ABC-type sugar transpor 21.7 1.2E+02 0.0042 25.6 5.2 34 123-157 60-95 (276)
127 3g1w_A Sugar ABC transporter; 21.7 1.1E+02 0.0036 26.7 4.8 45 121-166 60-107 (305)
128 1l7b_A DNA ligase; BRCT, autos 21.0 1.1E+02 0.0038 23.9 4.4 61 75-150 10-70 (92)
129 3h5o_A Transcriptional regulat 21.0 2.6E+02 0.0088 25.0 7.4 33 121-153 117-149 (339)
130 3eod_A Protein HNR; response r 20.9 2.3E+02 0.0077 20.9 6.0 75 74-156 6-90 (130)
131 3tb6_A Arabinose metabolism tr 20.9 1.3E+02 0.0043 25.9 5.1 44 121-165 70-118 (298)
132 3g68_A Putative phosphosugar i 20.9 5.2E+02 0.018 24.2 12.6 114 73-193 206-332 (352)
133 3o1i_D Periplasmic protein TOR 20.6 56 0.0019 28.4 2.8 30 121-151 62-93 (304)
134 2j48_A Two-component sensor ki 20.5 2.3E+02 0.0078 19.9 5.8 74 76-156 2-86 (119)
135 2ioy_A Periplasmic sugar-bindi 20.5 1.4E+02 0.0047 25.9 5.3 35 121-156 56-92 (283)
136 1a9x_B Carbamoyl phosphate syn 20.4 1.1E+02 0.0039 29.8 5.2 70 77-152 192-268 (379)
137 3fht_A ATP-dependent RNA helic 20.4 1.1E+02 0.0038 27.8 4.8 105 60-184 252-362 (412)
No 1
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-96 Score=708.06 Aligned_cols=277 Identities=78% Similarity=1.260 Sum_probs=239.6
Q ss_pred CCCCCCCCCccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018448 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV 80 (355)
Q Consensus 1 ~~~~~~~~~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILf 80 (355)
||+.++..+++|+|||+++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++|+++|||
T Consensus 1 ~~~~~~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILf 80 (305)
T 3iz6_A 1 MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIV 80 (305)
T ss_dssp CCSCCCSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred CCcccccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 88877778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCC
Q 018448 81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (355)
Q Consensus 81 VsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~ 160 (355)
||||+++|++|+|||+++|++||++||+|||||||+|.+|++||+|||+||+.|||+|+||+++||||||||||||||++
T Consensus 81 VgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~ 160 (305)
T 3iz6_A 81 QSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160 (305)
T ss_dssp ECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGG
T ss_pred EeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhh--hhhhhh-hhhhccCCC
Q 018448 161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET--AAIDYA-TAEYNTNLT 237 (355)
Q Consensus 161 VDypIP~NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~--~~~~~~-~~~~~~~~~ 237 (355)
|||+|||||||.+||+||+|+|+++|+++||++||+|||||||||||||||||+|||||+++ ++++|. .++|.. .
T Consensus 161 VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgtis~~~~w~v~pdl~fyrdpee~ek~~~~~~~~~~~~~~~~~~~~~--~ 238 (305)
T 3iz6_A 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAA--P 238 (305)
T ss_dssp CSEEEESCCSSTHHHHHHHHHHHHHHHHTTSSCCSCCCCCCCCSSSCCCCCCCSCSHHHHHHHHHHHHHHHSCCSSC--C
T ss_pred cceEEeCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCcccCceeeeeeChhhhhhhhhhhccccccchhhhhhhcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999877 667774 447743 3
Q ss_pred CCCCCCCcccCCCCCCCCCC--CCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCc
Q 018448 238 SGDQWPSQIADGGWAGGEVQ--KPIPGV--PYFPEAAPAATVPLGGDGWDAVPAPP 289 (355)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
++++|++ +|++++++ +++|++ +.|+ ++++ ++ ++|||+|++|.
T Consensus 239 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~ 284 (305)
T 3iz6_A 239 AADTWGG-----EWGTDAAAQPAAIPAQAGADWT-AAPA---PA-AGGWDTAAAPA 284 (305)
T ss_dssp CSSHHHH-----HHHHHHHHHHHCSCC-----------------------------
T ss_pred ccccccc-----ccccccccccCCCCCCCCCCcc-cccC---cc-CCCcccCCCCC
Confidence 6779954 79998774 234444 3485 3332 22 77888875443
No 2
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=2.7e-89 Score=644.78 Aligned_cols=242 Identities=50% Similarity=0.832 Sum_probs=201.7
Q ss_pred CCccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchh
Q 018448 8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYG 87 (355)
Q Consensus 8 ~~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~ 87 (355)
.|++|+||++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++++++|+|||||+++
T Consensus 3 ~~~~l~~~e~~v~~lL~AGvH~G~~~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~ 82 (252)
T 3u5c_A 3 LPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFG 82 (252)
T ss_dssp CCSSCSCCHHHHHHHHHHTTTEECSSCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHH
T ss_pred cchhcccCHHHHHHHHHCCeeccCCcCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHH
Confidence 47999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecC
Q 018448 88 QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (355)
Q Consensus 88 qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~ 167 (355)
|++|+|||+++|++||++||+|||||||+|.+|++||+|||+||+.|||||+||+++||||||||||||||++|||||||
T Consensus 83 q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~ 162 (252)
T 3u5c_A 83 QRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPC 162 (252)
T ss_dssp HHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEEC
T ss_pred HHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcCC-CCCCCcccccccccccCcccccchhHHhhhhhhhhhhhhccCCCCCCCCCCcc
Q 018448 168 NNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQI 246 (355)
Q Consensus 168 NndS~~SI~Li~~lLareVL~~rGti-s~~~~wev~pDLffyRdpeEie~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (355)
||||.+||+||||+|+++|+++||++ ||+|||+|||||||||||||+||+|+++++.++...+ +...+.|.+..
T Consensus 163 Ndds~~SI~Li~~~La~aVl~~rg~i~s~~~~w~v~~dl~fyrdpee~e~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 237 (252)
T 3u5c_A 163 NNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEE-----EAKEEVTEEQA 237 (252)
T ss_dssp CTTSTTHHHHHHHHHHHHHHSSSSSCCSSSCCCSSCGGGSSCCCC-----------------------------------
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCCcCcCCCCCccCceeeeecCHHHHhhHHHhhhhccccccc-----ccccccccccc
Confidence 99999999999999999999999999 6999999999999999999999988877644433211 11233444444
Q ss_pred cCCCCCCC
Q 018448 247 ADGGWAGG 254 (355)
Q Consensus 247 ~~~~w~~~ 254 (355)
+..+|.++
T Consensus 238 ~~~~~~~~ 245 (252)
T 3u5c_A 238 EATEWAEE 245 (252)
T ss_dssp --------
T ss_pred cccccccc
Confidence 45566653
No 3
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.4e-87 Score=639.89 Aligned_cols=249 Identities=55% Similarity=0.899 Sum_probs=190.5
Q ss_pred CccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhH
Q 018448 9 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ 88 (355)
Q Consensus 9 ~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~q 88 (355)
+++++||++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||||||+++|
T Consensus 5 ~~~l~~~~~~~~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq 84 (295)
T 2zkq_b 5 LDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQ 84 (295)
T ss_dssp --------CCHHHHHHHTTTBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHH
T ss_pred cccccccHHHHHHHHhcCEEecCCcCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 67999999999999999999999999999999999999789999999999999999999999779999999999999999
Q ss_pred HHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCC
Q 018448 89 RAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (355)
Q Consensus 89 raVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~N 168 (355)
++|++||+++|++||++||+||+||||++.+|++||+|||+||+.||+||+||+++||||||||||||||++||||||||
T Consensus 85 ~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~N 164 (295)
T 2zkq_b 85 RAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 164 (295)
T ss_dssp HHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESC
T ss_pred HHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhhhhhhhhhhhhccCCCCCCCCCCccc-
Q 018448 169 NKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIA- 247 (355)
Q Consensus 169 ndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (355)
|||.+||+||+|+|+++|+++||+++|++||+|||||||||||||+||+||++++.+....+....-..++.+|+..+.
T Consensus 165 dds~~SI~Li~~lla~aIl~~rg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (295)
T 2zkq_b 165 NKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPE 244 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCCSSSSCCCCCCCCHHHHCCC---------------------------------------
T ss_pred CCccchHHHHHHHHHHHHHHhcCcccCCCCCcccchheeecCHHHhhhhhhhhhhhhcchhhhcccccCCCccccccccc
Confidence 9999999999999999999999999999999999999999999999999877653321111100000124567765432
Q ss_pred CCCCCCCCCC
Q 018448 248 DGGWAGGEVQ 257 (355)
Q Consensus 248 ~~~w~~~~~~ 257 (355)
.++|+++++.
T Consensus 245 ~~~w~~~~~~ 254 (295)
T 2zkq_b 245 VADWSEGVQV 254 (295)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4689876544
No 4
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.7e-84 Score=610.17 Aligned_cols=222 Identities=62% Similarity=1.032 Sum_probs=195.4
Q ss_pred CCCCCCCCCccCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018448 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV 80 (355)
Q Consensus 1 ~~~~~~~~~~~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILf 80 (355)
|++++...+++++||++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||
T Consensus 30 ~~~~~~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLf 109 (253)
T 3bch_A 30 MASGSSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSV 109 (253)
T ss_dssp ------------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEE
T ss_pred hhhccccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 34444344789999999999999999999999999999999999997899999999999999999999997799999999
Q ss_pred EccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCC
Q 018448 81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (355)
Q Consensus 81 VsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~ 160 (355)
||||+++|++|++||+++|++||++||+|||||||++.+|++||+|||+||+.|++||+||+++||||||||||||||++
T Consensus 110 VgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~ 189 (253)
T 3bch_A 110 ISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRY 189 (253)
T ss_dssp EECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTT
T ss_pred EeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhh
Q 018448 161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET 222 (355)
Q Consensus 161 VDypIP~NndS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~ 222 (355)
|||||||||||.+||+|++|+|+++|+++||+++|++||+|||||||||||||+|||||+++
T Consensus 190 VDy~IP~Ndds~~SI~Li~~lla~aIl~grg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~ 251 (253)
T 3bch_A 190 VDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAA 251 (253)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHHHHHHHHHTSSCSSSCCSSCGGGGCCC-------------
T ss_pred CceEeecCCcchhhHHHHHHHHHHHHHHhcCccCCCCCCccCceeeeecCHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999987654
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=4.1e-84 Score=606.68 Aligned_cols=214 Identities=46% Similarity=0.814 Sum_probs=199.8
Q ss_pred cCCCcHHHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHH
Q 018448 11 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRA 90 (355)
Q Consensus 11 ~l~~ke~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qra 90 (355)
+|+|+++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++++++|||||||+++|++
T Consensus 2 ~~~m~~~~~~~lL~AgvH~G~~~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~ 81 (241)
T 2xzm_B 2 ATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRA 81 (241)
T ss_dssp CCHHHHHHHHHHHHTTTTEECSCCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHH
T ss_pred cccccHHHHHHHHhcCeEeccCcCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 67899999999999999999999999999999999978999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccc-cCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCC
Q 018448 91 VLKFAKYTHAHAI-AGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (355)
Q Consensus 91 VlKfA~~tGa~~I-agRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~Nn 169 (355)
|+++|+++|++|| ++||+||+||||++..|++||+|||+||+.||+||+||+++||||||||||||||++|||||||||
T Consensus 82 V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Nd 161 (241)
T 2xzm_B 82 AIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNN 161 (241)
T ss_dssp HHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCC
T ss_pred HHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCcccccchhHHhhhh
Q 018448 170 KGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAA 224 (355)
Q Consensus 170 dS~~SI~Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeEie~ee~~~~~~ 224 (355)
||.+||+|++|+|+++|+++||+++|++||+|||||||||||||+|||||++++.
T Consensus 162 ds~~SI~Li~~~la~ail~~rg~i~~~~~~~v~~dlf~~rdpee~~~~~~~~~~~ 216 (241)
T 2xzm_B 162 RSTESISMIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEG 216 (241)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTSSCSSSCCCSCTTTTSCCCCC------------
T ss_pred cccchHHHHHHHHHHHHHHhhCccCCCCCCCcCcceeeecCHHHhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999998765533
No 6
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-72 Score=517.69 Aligned_cols=192 Identities=40% Similarity=0.731 Sum_probs=187.8
Q ss_pred HHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 018448 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (355)
Q Consensus 17 ~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~ 96 (355)
.++++||+||+||||+++||+|++||||+|+||||||||+|||++|++|+++|+.+ ++++|+|||||+++|++|+|||+
T Consensus 7 v~~~~lL~AgvH~Gh~~~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~ 85 (202)
T 3j20_B 7 VPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGE 85 (202)
T ss_dssp THHHHHHHHTCSBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHH
T ss_pred ccHHHHHhcCccccCCcCCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHH
Confidence 58999999999999999999999999999988999999999999999999999987 89999999999999999999999
Q ss_pred HcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHH
Q 018448 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (355)
Q Consensus 97 ~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~ 176 (355)
++|++||++||+|||||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||||||||||.+||+
T Consensus 86 ~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~ 165 (202)
T 3j20_B 86 VTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALA 165 (202)
T ss_dssp HHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHH
T ss_pred HHCCceeCceecCCCcccHhHHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccccc
Q 018448 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 209 (355)
Q Consensus 177 Li~~lLareVL~~rGtis~~~~wev~pDLffyR 209 (355)
|+||+|+++|+++||++|++.+|++++|.|.-+
T Consensus 166 Li~~~la~avl~~rg~i~~~~~~~~~~~~f~~~ 198 (202)
T 3j20_B 166 LIYWILAREILYNRGEIQSREDFKIPVEEFEMK 198 (202)
T ss_dssp HHHHHHHHHHHHHHTSSCSSSCCSSCTTTTSCC
T ss_pred HHHHHHHHHHHHhcCCcCCcCCCCCCHHHHhhh
Confidence 999999999999999999999999999998644
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=7.4e-72 Score=514.05 Aligned_cols=191 Identities=34% Similarity=0.615 Sum_probs=185.6
Q ss_pred HHHHHHHHcCceeccCCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 018448 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (355)
Q Consensus 17 ~dv~kLLaAgvHLG~~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~ 96 (355)
+++++||+||+||||+++||+|++||||+|+||||||||+|||++|++|+++|+++ ++++|||||||+++|++|+++|+
T Consensus 11 ~~~~~lL~AgvH~Gh~~~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~ 89 (208)
T 1vi6_A 11 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSK 89 (208)
T ss_dssp SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHH
T ss_pred hhHHHHHhcCeEEcCCcCCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999978999999999999999999999999 99999999999999999999999
Q ss_pred HcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHH
Q 018448 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (355)
Q Consensus 97 ~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~ 176 (355)
++|++||++||+||+||||++.+|++||+|||+||+.|+|||+||+++||||||||||||||++|||||||||||.+||+
T Consensus 90 ~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~ 169 (208)
T 1vi6_A 90 VVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALA 169 (208)
T ss_dssp HHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHH
T ss_pred HhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccccCccc
Q 018448 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEE 213 (355)
Q Consensus 177 Li~~lLareVL~~rGtis~~~~wev~pDLffyRdpeE 213 (355)
|++|+|+++|+++||+++ +||||+||||.++-
T Consensus 170 Li~~~la~ail~grg~~~-----~~~~d~f~~~~~~~ 201 (208)
T 1vi6_A 170 IVYWLLAREIAKIRGQDF-----TYSIEDFEAELEGG 201 (208)
T ss_dssp HHHHHHHHHHHHHHTCCC-----CCCHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhCCCC-----CcChhheeeecCCC
Confidence 999999999999999997 89999999999873
No 8
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=1.2e-62 Score=464.85 Aligned_cols=180 Identities=28% Similarity=0.386 Sum_probs=170.1
Q ss_pred HHHHHHHHcCceeccC--CCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 018448 17 ADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (355)
Q Consensus 17 ~dv~kLLaAgvHLG~~--n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlK 93 (355)
+++++||+||+||||+ +|||+|++||||+| ||||||||++||++|++|+++|..+ +++++|||||||++++++|++
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~ 83 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRM 83 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTT
T ss_pred ccHHHHHHcCeeeccCcCCCCCccccceeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 6788999999999985 79999999999999 6999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCccccCCccCCcccCcccc-----------------cc-----------------------------cCCceEE
Q 018448 94 FAKYTHAHAIAGRHTPGTFTNQMQT-----------------SF-----------------------------NEPRLLI 127 (355)
Q Consensus 94 fA~~tGa~~IagRwtpGtLTNqiq~-----------------~F-----------------------------reP~LLV 127 (355)
+|+++|++||++||+||+||||++. .| ++||+||
T Consensus 84 ~A~~~g~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~ 163 (256)
T 2vqe_B 84 EAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIF 163 (256)
T ss_dssp TTTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEE
T ss_pred HHHHhCCeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEE
Confidence 9999999999999999999999874 22 6999999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhcCCCCCCCc
Q 018448 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKW 199 (355)
Q Consensus 128 VtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rGtis~~~~w 199 (355)
|+||+.|++||+||+++||||||||||||||++|||||||||||.+||+|++|+|+++|+++|+. +.++|
T Consensus 164 V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~--r~~~~ 233 (256)
T 2vqe_B 164 VVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG--VVEPS 233 (256)
T ss_dssp ESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSC--CCCSC
T ss_pred EeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhh--hhccc
Confidence 99999999999999999999999999999999999999999999999999999999999998875 56665
No 9
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.1e-61 Score=446.95 Aligned_cols=175 Identities=25% Similarity=0.377 Sum_probs=166.9
Q ss_pred HHHHHHHHcCceecc--CCCCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 018448 17 ADIQMMLAAEVHLGT--KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (355)
Q Consensus 17 ~dv~kLLaAgvHLG~--~n~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlK 93 (355)
+++++||+||+|||| ++|||+|++||||+| ||||||||++||++|++|+++|..+ +++++|||||||++++++|++
T Consensus 4 i~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~R-ngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~ 82 (231)
T 3bbn_B 4 INLEEMMEAGVHFGHGTRKWNPRMSPYISAKC-KGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp CSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEE-TTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred CCHHHHHHhCeEecCCcCcCCcccccceeccc-CCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHH
Confidence 578999999999998 679999999999999 6999999999999999999999975 999999999999999999999
Q ss_pred HHHHcCCccccCCccCCcccCcccc-----cc-----------------------------------------cCCceEE
Q 018448 94 FAKYTHAHAIAGRHTPGTFTNQMQT-----SF-----------------------------------------NEPRLLI 127 (355)
Q Consensus 94 fA~~tGa~~IagRwtpGtLTNqiq~-----~F-----------------------------------------reP~LLV 127 (355)
+|+++|++||++||+||+||||++. +| ++||+||
T Consensus 83 ~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~ 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHhCCccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEE
Confidence 9999999999999999999999974 22 2799999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhhcC
Q 018448 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (355)
Q Consensus 128 VtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~rGt 192 (355)
|+||+.|++||+||+++||||||||||||||++|||||||||||.+||+|++++|+++|+++++.
T Consensus 163 v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~ 227 (231)
T 3bbn_B 163 IVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227 (231)
T ss_dssp ESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred EeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 10
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=100.00 E-value=6.6e-62 Score=450.48 Aligned_cols=168 Identities=29% Similarity=0.362 Sum_probs=161.1
Q ss_pred HHHcCceeccCC--CCCCCcccceeeecCCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHc
Q 018448 22 MLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (355)
Q Consensus 22 LLaAgvHLG~~n--~npqMe~YIygrR~dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~t 98 (355)
||+||+||||++ |||+|++||||+| ||||||||++||++|++|+++|.++ +++++|||||||+++|++|+++|+++
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R-~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~ 79 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGAR-NKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSC 79 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCT-TSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHS
T ss_pred CccccccccCCCCCCCCCccccccccc-CCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHc
Confidence 589999999865 9999999999999 6999999999999999999999996 99999999999999999999999999
Q ss_pred CCccccCCccCCcccCcccc-----------------cc-----------------------------cCCceEEEeCCC
Q 018448 99 HAHAIAGRHTPGTFTNQMQT-----------------SF-----------------------------NEPRLLILTDPR 132 (355)
Q Consensus 99 Ga~~IagRwtpGtLTNqiq~-----------------~F-----------------------------reP~LLVVtDP~ 132 (355)
|++||++||+||+||||+|. .| ++||+|||+||+
T Consensus 80 g~~yv~~rWlgG~LTN~~ti~~~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGik~m~~~Pdllvv~Dp~ 159 (218)
T 3r8n_B 80 DQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDAD 159 (218)
T ss_dssp SCCEECSSCCSSSSTTTTTTHHHHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSSSSCSSCCCSCEEEETG
T ss_pred CCeeECCccCCCCccCHHHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccccccccCCCeEEecCcc
Confidence 99999999999999999873 13 599999999999
Q ss_pred CCchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHHHHHHhh
Q 018448 133 TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (355)
Q Consensus 133 ~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLareVL~~r 190 (355)
.|++||+||+++||||||||||||||++|||||||||||.+||+|++|+|+++|++++
T Consensus 160 ~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 160 HEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp GGHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred cccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999876
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=95.30 E-value=0.17 Score=43.32 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=71.0
Q ss_pred eHHHHHHHHHH----HHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCcc------ccCCccCC----------cc
Q 018448 54 NLGKTWEKLQM----AARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA------IAGRHTPG----------TF 112 (355)
Q Consensus 54 NL~kTwekL~l----Aa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~------IagRwtpG----------tL 112 (355)
+|.+|.+.|.. ++..++. +.+.++|.++|.+..+. +...++.+....+ +.-...++ ..
T Consensus 15 ~l~~t~~~l~~~i~~~~~~~~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~ 93 (196)
T 2yva_A 15 TQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDR 93 (196)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTST
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEeCchhhH-HHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCC
Confidence 56677765533 4555554 57788999999986432 3334444322100 00011111 00
Q ss_pred c------CcccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCCCC----ceEEe--cCCCCCcc--
Q 018448 113 T------NQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMRY----VDIGI--PANNKGKH-- 173 (355)
Q Consensus 113 T------Nqiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p~~----VDypI--P~NndS~~-- 173 (355)
. .+......+=|++|++....+ ..+++.|+..|++||+|++.. +++.. .|+.| |++..+.-
T Consensus 94 ~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~~ 173 (196)
T 2yva_A 94 LHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQE 173 (196)
T ss_dssp TGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHHH
Confidence 0 000123466788888875433 346788899999999999974 43322 45555 44433332
Q ss_pred hHHHHHHHHHHHHHH
Q 018448 174 SIGCLFWLLARMVLQ 188 (355)
Q Consensus 174 SI~Li~~lLareVL~ 188 (355)
+.-+++.+|...+.+
T Consensus 174 ~~l~~~~~L~~~~~~ 188 (196)
T 2yva_A 174 MHMLTVNCLCDLIDN 188 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333445555555443
No 12
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=94.83 E-value=0.23 Score=42.26 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchh---HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCc---
Q 018448 62 LQMAARVIVAIENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDH--- 135 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr~~~---qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~--- 135 (355)
+..+++.|. +.++|.++|....+ +....++ .+.|-... ..+... .....+-|++|++....+.
T Consensus 27 i~~~~~~i~---~a~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~---~~~~~~----~~~~~~~d~vI~iS~sG~t~~~ 95 (186)
T 1m3s_A 27 ADQLADHIL---SSHQIFTAGAGRSGLMAKSFAMRL-MHMGFNAH---IVGEIL----TPPLAEGDLVIIGSGSGETKSL 95 (186)
T ss_dssp HHHHHHHHH---HCSCEEEECSHHHHHHHHHHHHHH-HHTTCCEE---ETTSTT----CCCCCTTCEEEEECSSSCCHHH
T ss_pred HHHHHHHHH---cCCeEEEEecCHHHHHHHHHHHHH-HhcCCeEE---EeCccc----ccCCCCCCEEEEEcCCCCcHHH
Confidence 444444443 44689999887532 2222233 23443211 122221 2234566888888755432
Q ss_pred -hhHHHhhhcCCCEEEEecC-CCCC-CCceEEe--cCCCCC-----------cc-----hHHHHHHHHHHHHHHhhcC
Q 018448 136 -QPIKEAALGNIPTIAFCDT-DSPM-RYVDIGI--PANNKG-----------KH-----SIGCLFWLLARMVLQMRGT 192 (355)
Q Consensus 136 -qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypI--P~NndS-----------~~-----SI~Li~~lLareVL~~rGt 192 (355)
.++++|+..|+|||+|+|. +|++ ++.|+.| |+.... .. +.-+++.+|...+...+|.
T Consensus 96 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L~~~~~~~~~~ 173 (186)
T 1m3s_A 96 IHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGL 173 (186)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3778999999999999986 4544 2345444 544332 11 2356778888888877665
No 13
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=94.15 E-value=0.47 Score=41.66 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHH----HH-----cCCccccCCccCCcccC-------------cc
Q 018448 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFA----KY-----THAHAIAGRHTPGTFTN-------------QM 116 (355)
Q Consensus 60 ekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA----~~-----tGa~~IagRwtpGtLTN-------------qi 116 (355)
+.+..+++.+.. +.+.++|.++|+..... +-..++ .+ .|-..+.-. -++.+|- +.
T Consensus 48 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~A~~~a~~l~~~~~~~~~g~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~ 125 (212)
T 2i2w_A 48 HAIQRAAVLLADSFKAGGKVLSCGNGGSHC-DAMHFAEELTGRYRENRPGYPAIAIS-DVSHISCVGNDFGFNDIFSRYV 125 (212)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHHHHCTTSSSCSEEECC-CTTCGGGGSCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHHhhhcccCCCCeEEecC-ChHHhhHhhccCCHHHHHHHHH
Confidence 345666666654 57888999999986433 222233 11 222111100 1232221 11
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CCceEEecCCC
Q 018448 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN 169 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p-~~VDypIP~Nn 169 (355)
.....+-|++|++....+ ..++++|+..|++||+|+|.. +++ +..|+.|....
T Consensus 126 ~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 126 EAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 122567788888875543 346788999999999999864 554 34566665543
No 14
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=93.63 E-value=0.5 Score=41.18 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=50.7
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---cCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 018448 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~qraVlKfA~~---tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
|.+.++|.++|....+. +...|+.+ .|-... ..+... .....+=|++|++.-.-+ ..+++.|+..
T Consensus 44 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~~----~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~ 115 (200)
T 1vim_A 44 IDSARSIFVIGAGRSGY-IAKAFAMRLMHLGYTVY---VVGETV----TPRITDQDVLVGISGSGETTSVVNISKKAKDI 115 (200)
T ss_dssp HHHSSCEEEECSHHHHH-HHHHHHHHHHHTTCCEE---ETTSTT----CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEecHHHH-HHHHHHHHHHhcCCeEE---EeCCcc----ccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 44456899998875432 33344433 332211 112211 223456688888874433 2366888889
Q ss_pred CCCEEEEecCC-CCC-CCceEEecC
Q 018448 145 NIPTIAFCDTD-SPM-RYVDIGIPA 167 (355)
Q Consensus 145 nIPtIALcDTD-s~p-~~VDypIP~ 167 (355)
|+|||+|.+.. +++ ++.|+.|.+
T Consensus 116 g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 116 GSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp TCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCeEEEEECCCCChHHHhCCEEEEE
Confidence 99999999864 444 245655544
No 15
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=93.46 E-value=0.37 Score=45.34 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=87.5
Q ss_pred eHHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHH---HHcCCc--cccCCccCCcc---------cCcc--
Q 018448 54 NLGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFA---KYTHAH--AIAGRHTPGTF---------TNQM-- 116 (355)
Q Consensus 54 NL~kTwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA---~~tGa~--~IagRwtpGtL---------TNqi-- 116 (355)
.+.+|.+.+..++..++. +.+.++|.++|....+.-+..-+. ...|.. .+.+--.+|.- ....
T Consensus 49 ai~~t~~~i~~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l~~~g~~a~~~a~e~~ed~~~~ 128 (306)
T 1nri_A 49 AIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKA 128 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHHHhcchHHHhhhhhcccCcHHH
Confidence 567788877777777765 588899999999875544432111 122321 11111112211 1111
Q ss_pred -----c-ccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CCceEEecCCC--C---------Ccc
Q 018448 117 -----Q-TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN--K---------GKH 173 (355)
Q Consensus 117 -----q-~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p-~~VDypIP~Nn--d---------S~~ 173 (355)
. ..+.+-|++|++.-.-. ..+++.|+..|.+||+|++.. |++ +..|+.|.... . +..
T Consensus 129 ~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~t 208 (306)
T 1nri_A 129 VLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306)
T ss_dssp HHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHH
Confidence 1 13567788888874433 346788899999999999864 443 24677765542 1 122
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018448 174 SIGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (355)
Q Consensus 174 SI~Li~~lLareVL~~rGtis~~~~wev~pDL 205 (355)
+..+++.+|...+....|..-. +.|.|+
T Consensus 209 a~~~vl~~L~~~~~~~~g~~~~----~~m~~~ 236 (306)
T 1nri_A 209 AQKMVLNMLTTASMILLGKCYE----NLMVDV 236 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCBT----TBCTTC
T ss_pred HHHHHHHHHHHHHHHHccHHHH----HHHhhh
Confidence 4447888898888887775432 235665
No 16
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=93.40 E-value=1.1 Score=39.90 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=72.6
Q ss_pred HHHHHHHHHHH-h-hCCCcEEEEccCchh---HHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCc
Q 018448 61 KLQMAARVIVA-I-ENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDH 135 (355)
Q Consensus 61 kL~lAa~~I~a-I-en~g~ILfVsTr~~~---qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~ 135 (355)
.+..++..|.. . .+.++|.|+|....+ +....++. +.|-.... ..++.+.........+=|++|++...-+.
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~-~lg~~~~~--~~~~~~~~~~~~~~~~~DlvI~iS~SG~t 119 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFC-STGIPSVF--LHPSEAQHGDLGILQENDLLLLISNSGKT 119 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHH-HTTCCEEE--CCTTGGGBTGGGGCCTTCEEEEECSSSCC
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHH-hcCCcEEE--eCCHHHHHhhhccCCCCCEEEEEcCCCCC
Confidence 45566666655 2 347889999887543 22222332 23432111 11222221112334566888888754332
Q ss_pred ----hhHHHhhh--cCCCEEEEecC-CCCC-CCceEEecCCCCC------------cchHHHHHHHHHHHHHHhhcC
Q 018448 136 ----QPIKEAAL--GNIPTIAFCDT-DSPM-RYVDIGIPANNKG------------KHSIGCLFWLLARMVLQMRGT 192 (355)
Q Consensus 136 ----qaI~EAs~--lnIPtIALcDT-Ds~p-~~VDypIP~NndS------------~~SI~Li~~lLareVL~~rGt 192 (355)
.+++.|+. .|++||+|++. +|++ ++.|+.|...... .-+.-+++.+|+-.+...+|.
T Consensus 120 ~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~~g~ 196 (220)
T 3etn_A 120 REIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEF 196 (220)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTSCSSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46688898 99999999986 4444 3456655543211 113455677787777777764
No 17
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=92.99 E-value=1.4 Score=37.73 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=65.5
Q ss_pred eHHHHHHH----HHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHc-CCc-----cccCCccCC---ccc------
Q 018448 54 NLGKTWEK----LQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT-HAH-----AIAGRHTPG---TFT------ 113 (355)
Q Consensus 54 NL~kTwek----L~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~t-Ga~-----~IagRwtpG---tLT------ 113 (355)
++.+|.+. +..+++.|+. +.+.++|.++|.+..+. +...++.+. +-+ -+.-....+ .+|
T Consensus 19 ~l~~t~~~l~~~i~~~~~~i~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~ 97 (199)
T 1x92_A 19 TKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAG-DAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDY 97 (199)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCchhHH-HHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCc
Confidence 45555544 4456666554 57788999999986443 334444443 110 000001111 000
Q ss_pred C-------cccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCCC-C---ceEEecCCCCC
Q 018448 114 N-------QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-Y---VDIGIPANNKG 171 (355)
Q Consensus 114 N-------qiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p~-~---VDypIP~NndS 171 (355)
+ +.....++-|++|++....+ ..+++.|+..|++||+|++.. +++. + .|+.|....+.
T Consensus 98 ~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 98 SYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp CGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred cHHHHHHHHHHhCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 0 00123567788888875443 347788899999999999864 4432 3 67777665444
No 18
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=92.93 E-value=0.93 Score=38.19 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=62.4
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHH---HcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 018448 72 IENPGDIIVQSARPYGQRAVLKFAK---YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~qraVlKfA~---~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
+.+.++|.++|.+.... +...++. +.|-... ..+.. ......+-|++|++....+ ..++++|+..
T Consensus 37 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~----~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~ 108 (180)
T 1jeo_A 37 IIKAKKIFIFGVGRSGY-IGRCFAMRLMHLGFKSY---FVGET----TTPSYEKDDLLILISGSGRTESVLTVAKKAKNI 108 (180)
T ss_dssp HHHCSSEEEECCHHHHH-HHHHHHHHHHHTTCCEE---ETTST----TCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred HHhCCEEEEEeecHHHH-HHHHHHHHHHHcCCeEE---EeCCC----ccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 34456899998875332 2223333 2343211 11111 1223456688777764433 2367888999
Q ss_pred CCCEEEEecCCCCC-CCceEEe--cCCCCC---cc-----hHHHHHHHHHHHHHHhhcC
Q 018448 145 NIPTIAFCDTDSPM-RYVDIGI--PANNKG---KH-----SIGCLFWLLARMVLQMRGT 192 (355)
Q Consensus 145 nIPtIALcDTDs~p-~~VDypI--P~NndS---~~-----SI~Li~~lLareVL~~rGt 192 (355)
|+|||+|++...++ +..|+.| |++.++ .. +.-+++.+|...+...+|.
T Consensus 109 g~~vi~IT~~~~sl~~~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~~~~~~~~ 167 (180)
T 1jeo_A 109 NNNIIAIVCECGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNL 167 (180)
T ss_dssp CSCEEEEESSCCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCChHHHhCCEEEEeCCcccccccchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999864323 2355554 443221 22 2346677787777766654
No 19
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=92.71 E-value=2.8 Score=35.59 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCcc------ccCCccCC-c--cc-------C------cc
Q 018448 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA------IAGRHTPG-T--FT-------N------QM 116 (355)
Q Consensus 60 ekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~------IagRwtpG-t--LT-------N------qi 116 (355)
+.+..+++.|.. +.+.++|.++|.+..+. +...++......+ +.....++ . +| . +.
T Consensus 32 ~~i~~~~~~i~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 110 (198)
T 2xbl_A 32 ATVRKVADACIASIAQGGKVLLAGNGGSAA-DAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQV 110 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCcHhhH-HHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHH
Confidence 456777777764 47788999999986443 3333443211000 00011211 0 00 0 01
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CCceEEecCCC
Q 018448 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN 169 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypIP~Nn 169 (355)
.....+=|++|++....+ ..+++.|+..|++||+|++. ++++ +..|+.|....
T Consensus 111 ~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~ 169 (198)
T 2xbl_A 111 QALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPS 169 (198)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSC
T ss_pred HhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCC
Confidence 112466788888875443 34678889999999999985 4554 23555554443
No 20
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=92.19 E-value=1.7 Score=38.20 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=63.6
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHH---------cCCccccCCccCC----------------cccC
Q 018448 61 KLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKY---------THAHAIAGRHTPG----------------TFTN 114 (355)
Q Consensus 61 kL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~---------tGa~~IagRwtpG----------------tLTN 114 (355)
.+.+|++.|.. +.+.++|.++|.+..+.-+ ..++.+ .|-..+. .+| .+..
T Consensus 31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A-~~~~~~l~~~~~~~r~g~~~~~---~~~d~~~~~a~~~d~~~~~~~~~ 106 (201)
T 3trj_A 31 AIAQAAKAMVSCLENGGKVLVCGNGSSGVIA-QHFTSKLLNHFEMERPPLPAIA---LTGDVATITAVGNHYGFSQIFAK 106 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHHHH-HHHHHHHHC-------CCCEEE---TTSCHHHHHHHHHHTCGGGTTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHhHHHH-HHHHHHhcCccCCCCCCCceEE---ccCChHHHHHhccCCCHHHHHHH
Confidence 46677777765 6889999999998654322 333333 2322111 111 0111
Q ss_pred cccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-Cc---eEEecCCCCCc
Q 018448 115 QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YV---DIGIPANNKGK 172 (355)
Q Consensus 115 qiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~V---DypIP~NndS~ 172 (355)
+.....++=|++|++...-+ ..+++.|+..|+|||+|++. ++++. .. |+.|....+..
T Consensus 107 ~l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~~ 173 (201)
T 3trj_A 107 QVAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDNI 173 (201)
T ss_dssp HHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCCH
T ss_pred HHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCCc
Confidence 11112467788888874433 34678899999999999975 55553 34 66665554444
No 21
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=91.95 E-value=0.77 Score=39.58 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=45.6
Q ss_pred ccCCceEEEeCCCCCc----hhHHHhhhcCCCEEEEecC-CCCC-CCceEEe--cCCCC----------CcchHHHHHHH
Q 018448 120 FNEPRLLILTDPRTDH----QPIKEAALGNIPTIAFCDT-DSPM-RYVDIGI--PANNK----------GKHSIGCLFWL 181 (355)
Q Consensus 120 FreP~LLVVtDP~~D~----qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypI--P~Nnd----------S~~SI~Li~~l 181 (355)
..+=|++|++...-+. .+++.|+..|++||+|++. +|++ ++.|+.| |+... |.-+.-+++.+
T Consensus 90 ~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~ 169 (201)
T 3fxa_A 90 LQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDA 169 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHHHHHHH
Confidence 4566888888754332 4678899999999999986 4443 2455555 44322 12234445666
Q ss_pred HHHHHHHhhcC
Q 018448 182 LARMVLQMRGT 192 (355)
Q Consensus 182 LareVL~~rGt 192 (355)
|+..+...+|.
T Consensus 170 L~~~l~~~~g~ 180 (201)
T 3fxa_A 170 VIVCLMTYMNY 180 (201)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 77676666553
No 22
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=91.84 E-value=0.52 Score=39.93 Aligned_cols=126 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred eHHHHHHH-----HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH---HcCCccccCCccC---CcccCcccccccC
Q 018448 54 NLGKTWEK-----LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK---YTHAHAIAGRHTP---GTFTNQMQTSFNE 122 (355)
Q Consensus 54 NL~kTwek-----L~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~---~tGa~~IagRwtp---GtLTNqiq~~Fre 122 (355)
+|++|.+. +..+++.| .+.++|.++|.+.... +...++. +.|-... ..+ +.+.. ......+
T Consensus 16 ~l~~t~~~l~~~~l~~~~~~i---~~a~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~---~~~~~~~~~~~-~~~~~~~ 87 (187)
T 3sho_A 16 NLNQTLNQTQPEAIEAAVEAI---CRADHVIVVGMGFSAA-VAVFLGHGLNSLGIRTT---VLTEGGSTLTI-TLANLRP 87 (187)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH---HHCSEEEEECCGGGHH-HHHHHHHHHHHTTCCEE---EECCCTHHHHH-HHHTCCT
T ss_pred HHHHHHHhCCHHHHHHHHHHH---HhCCEEEEEecCchHH-HHHHHHHHHHhcCCCEE---EecCCchhHHH-HHhcCCC
Confidence 34555443 34444444 3446899998875332 2222332 2333211 122 11111 1123456
Q ss_pred CceEEEeCCCCCc----hhHHHhhhcCCCEEEEecC-CCCC-CCceEEecCCCC------CcchHHHHHHHHHHHHH
Q 018448 123 PRLLILTDPRTDH----QPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK------GKHSIGCLFWLLARMVL 187 (355)
Q Consensus 123 P~LLVVtDP~~D~----qaI~EAs~lnIPtIALcDT-Ds~p-~~VDypIP~Nnd------S~~SI~Li~~lLareVL 187 (355)
-|++|++....+. .+++.|+..|+|||+|.|. ++++ ++.|+.|+...+ |.-+.-.+..+|...+.
T Consensus 88 ~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~ 164 (187)
T 3sho_A 88 TDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIA 164 (187)
T ss_dssp TEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHHH
Confidence 6888888754332 4668888999999999986 4544 345665554433 23334444555554443
No 23
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=91.03 E-value=1 Score=37.95 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=48.2
Q ss_pred CcEEEEccCchhHHHHHHHHHHc---CCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhcCCCE
Q 018448 76 GDIIVQSARPYGQRAVLKFAKYT---HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPT 148 (355)
Q Consensus 76 g~ILfVsTr~~~qraVlKfA~~t---Ga~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPt 148 (355)
++|.++|....+. +...++.+. |-.... ..++.+....-....+-|++|++....+ ..+++.|+..|+++
T Consensus 50 ~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~v 126 (183)
T 2xhz_A 50 GKVVVMGMGASGH-IGRKMAATFASTGTPSFF--VHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPL 126 (183)
T ss_dssp SCEEEEECHHHHH-HHHHHHHHHHTTTCCEEE--CCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEeecHHHH-HHHHHHHHHHhcCceEEE--eCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCE
Confidence 4899998875432 334444433 221111 0111110000122456688888875433 23567888999999
Q ss_pred EEEecCC-CCC-CCceEEecC
Q 018448 149 IAFCDTD-SPM-RYVDIGIPA 167 (355)
Q Consensus 149 IALcDTD-s~p-~~VDypIP~ 167 (355)
|+|++.. +++ +..|+.|..
T Consensus 127 i~IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 127 ICITGRPESSMARAADVHLCV 147 (183)
T ss_dssp EEEESCTTSHHHHHSSEEEEC
T ss_pred EEEECCCCChhHHhCCEEEEe
Confidence 9999864 444 235655544
No 24
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=90.24 E-value=0.95 Score=43.15 Aligned_cols=137 Identities=18% Similarity=0.123 Sum_probs=72.2
Q ss_pred eeeHHHHHHHHHHHHHHHHHhhC--CCcEEEEccCchhHH--HHHHHHHH-cCCccccCCccCCcccCcccccccCCceE
Q 018448 52 IINLGKTWEKLQMAARVIVAIEN--PGDIIVQSARPYGQR--AVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLL 126 (355)
Q Consensus 52 IINL~kTwekL~lAa~~I~aIen--~g~ILfVsTr~~~qr--aVlKfA~~-tGa~~IagRwtpGtLTNqiq~~FreP~LL 126 (355)
+=++++|.+.....-+++..+.+ ..+|.|+++.....- ....+..+ .|-.... ..++-+.........+.|++
T Consensus 29 ~~~i~~t~~~~~~i~~~~~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlv 106 (355)
T 2a3n_A 29 LTSAREIIAARQKAEQVADEIYQAGFSSLFFASVGGSLAPMMAINEFAKELTTLPVYV--EQAAELIHKGNKRLNKDSVV 106 (355)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEE--EEHHHHHHHCCTTCCTTCEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEE--cCcHHHHhhchhcCCCCCEE
Confidence 33566666522222223333433 678999888753321 12222333 4432111 11111111111123677888
Q ss_pred EEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CCceEEecC--CCCCcchHHHHHHHHHHHHHHhhc
Q 018448 127 ILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPA--NNKGKHSIGCLFWLLARMVLQMRG 191 (355)
Q Consensus 127 VVtDP~~D----~qaI~EAs~lnIPtIALcDTD-s~p-~~VDypIP~--NndS~~SI~Li~~lLareVL~~rG 191 (355)
|++...-+ ..+++.|+..|.+||+|+|.. |++ +..|+.|.. ..++ .+-..+..+++-.++..+|
T Consensus 107 I~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~-~~~~~~~~ll~~~l~~~~~ 178 (355)
T 2a3n_A 107 ITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGV-EYEYMLLYWLFFRVLSRNN 178 (355)
T ss_dssp EEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH-HHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcch-hHHHHHHHHHHHHHHHHcC
Confidence 88886544 347788999999999999864 544 345665544 4433 2233445556666777776
No 25
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=89.77 E-value=2 Score=41.52 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=71.0
Q ss_pred hhCCCcEEEEccCchh--HHHHHHHHHH-cCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 018448 72 IENPGDIIVQSARPYG--QRAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~--qraVlKfA~~-tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
+.+..+|.|++..... ......+..+ .|..... ..++.+... ...+.+.+++|++...-+ -.+++.|+..
T Consensus 47 ~~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~~-~~~~~~~dlvI~iS~SGeT~e~l~a~~~ak~~ 123 (366)
T 3knz_A 47 ERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDV--CWPFMLDDE-TLARSGKALVVGISQGGGSLSTLAAMERARNV 123 (366)
T ss_dssp HTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEE--ECGGGCCHH-HHHHSCSEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEE--EcchHHHhh-ccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHc
Confidence 4677899999886542 1122222222 3433211 223333221 123467788888765433 3578999999
Q ss_pred CCCEEEEecC-CCCCC-CceEEecCCCC---------CcchHHHHHHHHHHHHHHhhcCCCC
Q 018448 145 NIPTIAFCDT-DSPMR-YVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIRP 195 (355)
Q Consensus 145 nIPtIALcDT-Ds~p~-~VDypIP~Nnd---------S~~SI~Li~~lLareVL~~rGtis~ 195 (355)
|++||+|++. +|++. ..|+.|+.+.. |..+--+++.+|+-.+.+.||+++.
T Consensus 124 Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E~~~a~tks~tsql~~l~lLa~~l~~~~g~~~~ 185 (366)
T 3knz_A 124 GHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDG 185 (366)
T ss_dssp TCEEEEEESSSSCGGGGGCSEECCCCCCC------CTHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred CCCEEEEECCCCChhhhhcCEEEecCCCccccccccHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999975 66663 56777765422 1122234566777778888887763
No 26
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=89.11 E-value=4.9 Score=33.73 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCcc------ccCCccCC---ccc-------------Ccc
Q 018448 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA------IAGRHTPG---TFT-------------NQM 116 (355)
Q Consensus 60 ekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~------IagRwtpG---tLT-------------Nqi 116 (355)
+.+..+++.|.. +.+.++|.++|++..+. +...++......+ +.....++ .+| .+.
T Consensus 26 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 104 (188)
T 1tk9_A 26 GQIAKVGELLCECLKKGGKILICGNGGSAA-DAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV 104 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHH
Confidence 667778887774 57888999999986442 3334443221100 00011111 111 001
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCCC
Q 018448 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNK 170 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nnd 170 (355)
.....+=|++|++....+ ..+++.|+..|++||+|++. ++++. ..|+.|.....
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 112466788888875433 34668888999999999985 45543 35665554433
No 27
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=88.20 E-value=2.3 Score=40.82 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=49.4
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhc-CCCEEEEecC-CCCCC-CceEEecCCC--C-C------cchHHHHHHHHH
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALG-NIPTIAFCDT-DSPMR-YVDIGIPANN--K-G------KHSIGCLFWLLA 183 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~l-nIPtIALcDT-Ds~p~-~VDypIP~Nn--d-S------~~SI~Li~~lLa 183 (355)
..+.|++|++...-+ ..+++.|+.. |.+||+|+|. +|++. ..|+.|+... + + ..|.-+.+.+|+
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E~~~~~t~s~ts~~~~l~ll~ 174 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTG 174 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCccccccccccHHHHHHHHHHHH
Confidence 467788888886544 4477888888 9999999986 55553 3566655432 1 1 113334556677
Q ss_pred HHHHHhhcCCC
Q 018448 184 RMVLQMRGTIR 194 (355)
Q Consensus 184 reVL~~rGtis 194 (355)
..+.+.+|.++
T Consensus 175 ~~l~~~~g~~~ 185 (373)
T 2aml_A 175 LHFAYKTVQID 185 (373)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHHhCCCC
Confidence 77777778765
No 28
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=86.76 E-value=3.9 Score=36.07 Aligned_cols=98 Identities=6% Similarity=0.096 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHc-CCccccCCccCCcccCcccccccCCceEEEeCCC-CC
Q 018448 58 TWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TD 134 (355)
Q Consensus 58 TwekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~t-Ga~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~-~D 134 (355)
+-+.+..|++.++. +.+++.|-+.|+..-. ++...+-.- +-..-.++|.. ...+++-|.++|..+. .|
T Consensus 20 ~e~~I~~AA~llaqai~~~g~IyvfG~Ghs~--~~~~e~~~~~e~l~~~~~~~~-------~~~i~~~D~vii~S~Sg~n 90 (170)
T 3jx9_A 20 QEDELFDVVRLLAQALVGQGKVYLDAYGEFE--GLYPMLSDGPDQMKRVTKIKD-------HKTLHAVDRVLIFTPDTER 90 (170)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCEEEEECGGGG--GGTHHHHTSTTCCTTEEECCT-------TCCCCTTCEEEEEESCSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCCcHH--HHHHHHHcccCCccchhhhhh-------cCCCCCCCEEEEEeCCCCC
Confidence 33489999999974 7888989888887632 222222211 11111223321 2266777877777544 55
Q ss_pred chhH---HHhhhcCCCEEEEec---CCCC-CCCceEE
Q 018448 135 HQPI---KEAALGNIPTIAFCD---TDSP-MRYVDIG 164 (355)
Q Consensus 135 ~qaI---~EAs~lnIPtIALcD---TDs~-p~~VDyp 164 (355)
..+| .+|+..|+|+|++++ +++. .++.|++
T Consensus 91 ~~~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~a 127 (170)
T 3jx9_A 91 SDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLA 127 (170)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEE
T ss_pred HHHHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHH
Confidence 4344 778888999999999 3332 3566766
No 29
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=86.16 E-value=4.5 Score=38.64 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=70.5
Q ss_pred hCCCcEEEEccCchh---HHHHHHHHHHcCCccccCCccCCcccCccccccc-CCceEEEeCCCCC----chhHHHhhhc
Q 018448 73 ENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN-EPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 73 en~g~ILfVsTr~~~---qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~Fr-eP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
.+..+|.|++....+ +.+-..+-+..|..... ..++.+. .....+. +.+++|++...-+ -.+++.|+..
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~se~~-~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 108 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVK--MYPFMIT-EDTFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDK 108 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEE--ECGGGCC-GGGGSSCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEE--Ecchhhh-hcccCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 466789999886542 22222222334543211 1233332 1222344 6788887765433 3578999999
Q ss_pred CCCEEEEecC-CCCCC-CceEEecCCC---------CCcchHHHHHHHHHHHHHHhhcCCCC
Q 018448 145 NIPTIAFCDT-DSPMR-YVDIGIPANN---------KGKHSIGCLFWLLARMVLQMRGTIRP 195 (355)
Q Consensus 145 nIPtIALcDT-Ds~p~-~VDypIP~Nn---------dS~~SI~Li~~lLareVL~~rGtis~ 195 (355)
|++||+|++. +|++. ..|+.|+.+. ++..+--+++.+|+-.+.+.+|.++.
T Consensus 109 ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~~l~~~~g~~~~ 170 (352)
T 3g68_A 109 GCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKGIISS 170 (352)
T ss_dssp TCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHHHHHHHTTSSCH
T ss_pred CCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 9999999975 66664 4677776542 22222234566788888888887753
No 30
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=85.76 E-value=2.9 Score=37.27 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCcc-ccCCccCCcccCc-------------------ccc
Q 018448 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRHTPGTFTNQ-------------------MQT 118 (355)
Q Consensus 60 ekL~lAa~~I~a-Ien~g~ILfVsTr~~~qraVlKfA~~tGa~~-IagRwtpGtLTNq-------------------iq~ 118 (355)
+.|..|++.|.. +.+.++|.++|+...+. +...++.+.+... +.-...++.+.+. ...
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~ 104 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM-IAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLH 104 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH-HHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHh
Confidence 567788888775 68888999999885443 2233332222110 0000112211100 012
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC
Q 018448 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 119 ~FreP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT 154 (355)
...+=|++|++...-+ ..+++.|+..|++||+|++.
T Consensus 105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 105 QVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2466788888875433 34678889999999999886
No 31
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=76.11 E-value=12 Score=35.23 Aligned_cols=127 Identities=12% Similarity=0.051 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHc-CCccccCCccCCcccCcccccccCCceEEEeCCCCC---
Q 018448 62 LQMAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--- 134 (355)
Q Consensus 62 L~lAa~~I~aIen~g~ILfVsTr~~---~qraVlKfA~~t-Ga~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D--- 134 (355)
|..++..|.. .+..+|.|++.... ++.+-.++-+.. |-.... ..+.-|.......+.+.+++|++...-+
T Consensus 13 i~~~v~~i~~-~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~e 89 (329)
T 3eua_A 13 VQAFLQDLKG-KTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDL--YSANEFIQRNPVQLGEKSLVILCSHSGNTPE 89 (329)
T ss_dssp HHHHHHHHTT-CCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEE--EEHHHHHHHCCTTCSTTEEEEEEESSSCCHH
T ss_pred HHHHHHHHHH-CCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEE--EccHHHHhcCccCCCCCcEEEEEcCCCCCHH
Confidence 3344444431 15678999988753 222222232222 332111 0111111111112456788888865533
Q ss_pred -chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCC---CCcchHH-HHHHHHHHHHHHhhc
Q 018448 135 -HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN---KGKHSIG-CLFWLLARMVLQMRG 191 (355)
Q Consensus 135 -~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nn---dS~~SI~-Li~~lLareVL~~rG 191 (355)
-.+++.|+..|++||+|+|. +|++. ..|+.|+.+. .+..+-. ..+.+|+-.+++.+|
T Consensus 90 ~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~e~~va~t~~~~l~~la~~l~~~~~ 153 (329)
T 3eua_A 90 TVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQVLE 153 (329)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTTCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCCccchhhHHHHHHHHHHHHHHHHhc
Confidence 34788999999999999975 55553 4677765442 2222222 233445555555555
No 32
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=73.54 E-value=18 Score=34.42 Aligned_cols=129 Identities=14% Similarity=0.080 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchh---HHHHHHHHHHc-CCccccCCccCCcccCcccccccCCceEEEeCCCCC-
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYG---QRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~---qraVlKfA~~t-Ga~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D- 134 (355)
+.+..++..|..-.+..+|.|++..... +.+-..+-+.. |..... ..++.+.......+.+.+++|++...-+
T Consensus 25 ~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~T 102 (347)
T 3fkj_A 25 ENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGY--ITSNEFVHATPKALGKNSVVILASQQGNT 102 (347)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEE--EEHHHHHHSCCTTCSTTEEEEEEESSSCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEE--eCcHHHHhhCcCCCCCCCEEEEEeCCCCc
Confidence 4455555555411256789999887532 22222222222 332211 1112121111112456788888865433
Q ss_pred ---chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCCC------C--cchHHHHHHHHHHHHHHhhc
Q 018448 135 ---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNK------G--KHSIGCLFWLLARMVLQMRG 191 (355)
Q Consensus 135 ---~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nnd------S--~~SI~Li~~lLareVL~~rG 191 (355)
-.+++.|+..|++||+|+|. +|++. ..|+.|+.+.. + .++. ..+.+|+-.+.+.+|
T Consensus 103 ~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~g~~e~~~~t~~~-~~l~llal~l~~~~~ 171 (347)
T 3fkj_A 103 AETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKA-AYSLWLALEILAQTE 171 (347)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCCCTTSCCCGGGBHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccCCCCCccchhHHHH-HHHHHHHHHHHHHhC
Confidence 34778889999999999975 55553 46666654332 2 1222 234455555666665
No 33
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=71.09 E-value=6.7 Score=37.81 Aligned_cols=120 Identities=11% Similarity=0.227 Sum_probs=66.9
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 018448 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (355)
Q Consensus 72 Ien~g~ILfVsTr~~---~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~l 144 (355)
+.+..+|.|++.... ++-+-..+-+..|..... ..++-+.. ......+.+++|++...-+ -.+++.|+..
T Consensus 51 l~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~-~~~~~~~~dlvI~iS~SG~T~e~l~al~~ak~~ 127 (372)
T 3tbf_A 51 FEKTKHICIVACGTSYNAGMTAKYWIEKYAKVPCSV--EIASEIRY-RDNVVVDGSLFVSISQSGETADTLESLRKSKKQ 127 (372)
T ss_dssp HHSCCEEEEEECHHHHHHHHHHHHHHHHHTCCCEEE--EEHHHHTT-SCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTT
T ss_pred HhcCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--echhHhhh-cccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHc
Confidence 356788999888654 222222222323432111 11222211 1123467788888875533 3477889999
Q ss_pred C-CCEEEEecC-CCCCC-CceEEecCC---CCCc------chHHHHHHHHHHHHHHhhcCCC
Q 018448 145 N-IPTIAFCDT-DSPMR-YVDIGIPAN---NKGK------HSIGCLFWLLARMVLQMRGTIR 194 (355)
Q Consensus 145 n-IPtIALcDT-Ds~p~-~VDypIP~N---ndS~------~SI~Li~~lLareVL~~rGtis 194 (355)
| ++||+|++. +|++. ..|+.|+.+ ..+. .+.-+++.+|+-.+.+.+|.++
T Consensus 128 G~a~~iaIT~~~~S~La~~aD~~l~~~~g~E~~~a~Tks~t~ql~~l~lL~~~l~~~~g~~~ 189 (372)
T 3tbf_A 128 NYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFTLVIAKLKNSLT 189 (372)
T ss_dssp TEEEEEEEESSSSSHHHHHSSEEEECCCCCCCBSSCSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCceEEEEcCCCCChHHHhCCEeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9 999999965 55543 355655543 2222 2234445677777777778765
No 34
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=69.77 E-value=31 Score=32.69 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=54.5
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 018448 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (355)
Q Consensus 73 en~g~ILfVsTr~~---~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~ln 145 (355)
.+..+|.|++.... ++.+-.++-+..|-.... ..+..++.+......+.+++|++...-+ -.+++.|+..|
T Consensus 40 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~--~~~~~~~~~~~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g 117 (334)
T 3hba_A 40 FKPKFVMIVGRGSSDHAGVFAKYLFEIEASIPTFA--AAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNAG 117 (334)
T ss_dssp HCCSCEEEESSGGGCHHHHHHHHHHHHHHCCCEEE--CCHHHHHTSCCCCCCTTCEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--EcchHHHHhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 56788999887653 233333444445643221 1111111121223356678877765433 35788999999
Q ss_pred CCEEEEecC-CCCCC-CceEEecCC
Q 018448 146 IPTIAFCDT-DSPMR-YVDIGIPAN 168 (355)
Q Consensus 146 IPtIALcDT-Ds~p~-~VDypIP~N 168 (355)
+++|+|++. +|++. ..|+.|+.+
T Consensus 118 ~~~i~IT~~~~S~la~~ad~~l~~~ 142 (334)
T 3hba_A 118 AFCVALVNDETAPIKDIVDVVIPLR 142 (334)
T ss_dssp CEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CcEEEEeCCCCChHHHhcCEeeeec
Confidence 999999975 66664 456666543
No 35
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=68.27 E-value=11 Score=35.92 Aligned_cols=72 Identities=13% Similarity=0.244 Sum_probs=46.0
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcC-CCEEEEecC-CCCCC-CceEEecCC--CC-------CcchHHHHHHHHH
Q 018448 120 FNEPRLLILTDPRTD----HQPIKEAALGN-IPTIAFCDT-DSPMR-YVDIGIPAN--NK-------GKHSIGCLFWLLA 183 (355)
Q Consensus 120 FreP~LLVVtDP~~D----~qaI~EAs~ln-IPtIALcDT-Ds~p~-~VDypIP~N--nd-------S~~SI~Li~~lLa 183 (355)
..+.|++|++...-+ ..+++.|+..| ++||+|+|. +|++. ..|+.|+.. .+ |..+.-+++.+|+
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e~~~a~t~s~~~~l~~l~~L~ 176 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 176 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCeecccchhhHHHHHHHHHHHH
Confidence 466788888875433 34778899999 999999986 45442 356655543 21 2223445566666
Q ss_pred HHHHHhhc
Q 018448 184 RMVLQMRG 191 (355)
Q Consensus 184 reVL~~rG 191 (355)
-.+...+|
T Consensus 177 ~~l~~~~~ 184 (368)
T 1moq_A 177 AKLSRLKG 184 (368)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77766666
No 36
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=67.78 E-value=15 Score=34.62 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcccc------CCccCCcccCcccccccCCceEEEeCCC
Q 018448 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA------GRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (355)
Q Consensus 59 wekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~Ia------gRwtpGtLTNqiq~~FreP~LLVVtDP~ 132 (355)
.+.|..|+..+..-...-.+++++..+.-.+.+++.++..|..+.. .-++.|+ ++....-+..-|++|+....
T Consensus 209 ~~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~-~~dl~~~y~~aDv~vl~ss~ 287 (374)
T 2xci_A 209 VEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDR-FGILKELYPVGKIAIVGGTF 287 (374)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCS-SSCHHHHGGGEEEEEECSSS
T ss_pred HHHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECC-HHHHHHHHHhCCEEEECCcc
Confidence 3455556555443212356778887665434677777777754321 1122332 22233345667877775433
Q ss_pred CC--chhHHHhhhcCCCEEE
Q 018448 133 TD--HQPIKEAALGNIPTIA 150 (355)
Q Consensus 133 ~D--~qaI~EAs~lnIPtIA 150 (355)
.+ -+.+.||..+|+|+|+
T Consensus 288 ~e~gg~~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 288 VNIGGHNLLEPTCWGIPVIY 307 (374)
T ss_dssp SSSCCCCCHHHHTTTCCEEE
T ss_pred cCCCCcCHHHHHHhCCCEEE
Confidence 22 3679999999999996
No 37
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=67.57 E-value=7.2 Score=35.53 Aligned_cols=89 Identities=7% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCceeeeHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceE
Q 018448 48 DGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLL 126 (355)
Q Consensus 48 dGI~IINL~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LL 126 (355)
..+-||=-.++ |.+.+..+ +.+++|.+|+.+. ...+.+.++..+...+.+.|.++.|. ..++|
T Consensus 32 k~VLVVGgG~v------a~~ka~~Ll~~GA~VtVvap~~--~~~l~~l~~~~~i~~i~~~~~~~dL~--------~adLV 95 (223)
T 3dfz_A 32 RSVLVVGGGTI------ATRRIKGFLQEGAAITVVAPTV--SAEINEWEAKGQLRVKRKKVGEEDLL--------NVFFI 95 (223)
T ss_dssp CCEEEECCSHH------HHHHHHHHGGGCCCEEEECSSC--CHHHHHHHHTTSCEEECSCCCGGGSS--------SCSEE
T ss_pred CEEEEECCCHH------HHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHcCCcEEEECCCCHhHhC--------CCCEE
Confidence 34666766654 44444544 5678899888653 23456666655555555555544433 35666
Q ss_pred EEe-C-CCCCchhHHHhhhcCCCEEEEecC
Q 018448 127 ILT-D-PRTDHQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 127 VVt-D-P~~D~qaI~EAs~lnIPtIALcDT 154 (355)
|.. | +..+.+.-.+|. .|||+ -.+|.
T Consensus 96 IaAT~d~~~N~~I~~~ak-~gi~V-NvvD~ 123 (223)
T 3dfz_A 96 VVATNDQAVNKFVKQHIK-NDQLV-NMASS 123 (223)
T ss_dssp EECCCCTHHHHHHHHHSC-TTCEE-EC---
T ss_pred EECCCCHHHHHHHHHHHh-CCCEE-EEeCC
Confidence 654 2 333344444454 99994 44444
No 38
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=62.65 E-value=9.2 Score=36.50 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=42.9
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCCC---CCcc------hHHHHHHHHHHH
Q 018448 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN---KGKH------SIGCLFWLLARM 185 (355)
Q Consensus 121 reP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~Nn---dS~~------SI~Li~~lLare 185 (355)
.+=|++|++...-+ ..+++.|+..|.+||+|+|. +|++. ..|+.|+... .+.. +.-+++.+|+-.
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~a~t~s~t~~l~~l~~L~~~ 175 (367)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALS 175 (367)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCCcccccccHHHHHHHHHHHHHHHH
Confidence 44567777764433 34778899999999999986 45543 3566665542 2221 333445556655
Q ss_pred HHHhhcC
Q 018448 186 VLQMRGT 192 (355)
Q Consensus 186 VL~~rGt 192 (355)
+...+|.
T Consensus 176 l~~~~~~ 182 (367)
T 2poc_A 176 LSNDSIS 182 (367)
T ss_dssp HTTTBST
T ss_pred HHHHcCc
Confidence 5544443
No 39
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=60.68 E-value=49 Score=31.27 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=53.2
Q ss_pred hCCCcEEEEccCchhH--HHHHHHHHH-cCCccccCCccCCcccCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 018448 73 ENPGDIIVQSARPYGQ--RAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (355)
Q Consensus 73 en~g~ILfVsTr~~~q--raVlKfA~~-tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D----~qaI~EAs~ln 145 (355)
.+..+|.|++...... .....+..+ .|-.... ..+...+........+.+++|++...-+ -.+++.|+..|
T Consensus 41 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G 118 (344)
T 3fj1_A 41 RDPSFVATVARGSSDHVCTYLSYAAELLLGLPVAS--LGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDG 118 (344)
T ss_dssp HCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEE--CCTHHHHTTCCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--ecchHHhhhcccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 5778999998875421 222222232 4543211 0111111112223456788887764433 35788999999
Q ss_pred CCEEEEecC-CCCCC-CceEEecCC
Q 018448 146 IPTIAFCDT-DSPMR-YVDIGIPAN 168 (355)
Q Consensus 146 IPtIALcDT-Ds~p~-~VDypIP~N 168 (355)
.+||+|++. +|++. ..|+.|+.+
T Consensus 119 a~~iaIT~~~~S~La~~ad~~l~~~ 143 (344)
T 3fj1_A 119 ALCVALTNDAASPLAGVSAHTIDIH 143 (344)
T ss_dssp CEEEEEESCTTSHHHHTSSEEEECC
T ss_pred CcEEEEECCCCChHHHhcCEeeecC
Confidence 999999965 66653 456666543
No 40
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=57.19 E-value=7.2 Score=32.52 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=28.5
Q ss_pred hhHHHHHhhhhch-------HHHHHHHhhhh---HHHHHHHHHHHHHHh
Q 018448 309 NFILREFCFNHFK-------PLLLQLCVSLN---FFMFCKELWLFSFFF 347 (355)
Q Consensus 309 ~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~ 347 (355)
.=+|-+||+|+.. -+..||.--|+ --.||+|||-.-.+.
T Consensus 41 Ddvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~eLW~LLi~a 89 (111)
T 1mp1_A 41 DDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSA 89 (111)
T ss_dssp CSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 4578899999873 45667776665 578999999765543
No 41
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=52.83 E-value=23 Score=31.09 Aligned_cols=45 Identities=7% Similarity=-0.004 Sum_probs=33.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|.||+.....+...++++...+||+|.+ |++.+...+++...
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~ 109 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVTH-GRSDMGIEHAFHDF 109 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEE-SCCCSSCCCEEEEE
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEEE-CCcCCCCCCcEEEe
Confidence 5789999988776777888999999999864 66554444555443
No 42
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=51.12 E-value=35 Score=32.99 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccC-cccccccCCceEEEeCCCCCchhH
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPRTDHQPI 138 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTN-qiq~~FreP~LLVVtDP~~D~qaI 138 (355)
..|..|+..|..-.....++++|........+++.++..|...-.=+|+| ...+ ....-+..-|++|+.....-...+
T Consensus 391 ~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g-~~~~~~~~~~~~~adv~v~ps~~~~g~~~ 469 (568)
T 2vsy_A 391 PQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTA 469 (568)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEEC-CCCHHHHHHHGGGCSEEECCSSSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeC-CCCHHHHHHHHhcCCEEeeCCCCCCcHHH
Confidence 34445554443322335677788333344556677777765311113443 3332 222335667887776655557789
Q ss_pred HHhhhcCCCEEEE
Q 018448 139 KEAALGNIPTIAF 151 (355)
Q Consensus 139 ~EAs~lnIPtIAL 151 (355)
.||...|+|||++
T Consensus 470 lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 470 SDALWTGCPVLTT 482 (568)
T ss_dssp HHHHHTTCCEEBC
T ss_pred HHHHhCCCCEEec
Confidence 9999999999995
No 43
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=49.63 E-value=12 Score=35.75 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=32.7
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-CceEEecCC
Q 018448 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (355)
Q Consensus 121 reP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDT-Ds~p~-~VDypIP~N 168 (355)
.+=|++|++...-+ ..+++.|+..|++||+|+|. +|++. ..|+.|+..
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 159 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHIN 159 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeec
Confidence 45567777764433 34788999999999999986 45543 356666543
No 44
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=48.73 E-value=39 Score=27.57 Aligned_cols=89 Identities=9% Similarity=-0.039 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHH--HhhCCCcEEEEccCch-hHHHHHHHHHHcCCccccCCccCCcccCc-ccccccCCceEEEeCCCCC
Q 018448 59 WEKLQMAARVIV--AIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD 134 (355)
Q Consensus 59 wekL~lAa~~I~--aIen~g~ILfVsTr~~-~qraVlKfA~~tGa~~IagRwtpGtLTNq-iq~~FreP~LLVVtDP~~D 134 (355)
++.+..|+..+. .-...-+++++|..+. ....+++.++..+ +=+|+-|.+++. ...-++.-|++|+....+.
T Consensus 52 ~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~ 127 (200)
T 2bfw_A 52 VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEP 127 (200)
T ss_dssp HHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCCS
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCCC
Confidence 344555555543 2112346777887651 3345666777766 223424555432 2333567788777543322
Q ss_pred -chhHHHhhhcCCCEEEE
Q 018448 135 -HQPIKEAALGNIPTIAF 151 (355)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (355)
...+.||...|+|+|+-
T Consensus 128 ~~~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 128 FGLVALEAMCLGAIPIAS 145 (200)
T ss_dssp SCHHHHHHHHTTCEEEEE
T ss_pred ccHHHHHHHHCCCCEEEe
Confidence 46789999999999986
No 45
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=48.64 E-value=30 Score=35.31 Aligned_cols=119 Identities=11% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhCCCcEEEEccCchhH---HHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCch----hHHHhhhc
Q 018448 72 IENPGDIIVQSARPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQ----PIKEAALG 144 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~q---raVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~q----aI~EAs~l 144 (355)
+.+.++|.|++....+. -+-..+.+.+|..... ..+.-+ ........+.+++|++...-+.. +++.|+..
T Consensus 289 i~~~~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~~~--~~~~e~-~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 365 (608)
T 2bpl_A 289 LSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDV--EIASEF-RYRKSAVRRNSLMITLSQSGETADTLAGLRLSKEL 365 (608)
T ss_dssp HHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEE--EEHHHH-TTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCEEE--EehhHh-hccCCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHc
Q ss_pred C-CCEEEEecCCCCC--CCceEEecCC---------CCCcchHHHHHHHHHHHHHHhhcCCC
Q 018448 145 N-IPTIAFCDTDSPM--RYVDIGIPAN---------NKGKHSIGCLFWLLARMVLQMRGTIR 194 (355)
Q Consensus 145 n-IPtIALcDTDs~p--~~VDypIP~N---------ndS~~SI~Li~~lLareVL~~rGtis 194 (355)
| +++|+|++....+ +..|+.|+.. .+|..+.-+++.+|+-.+...+| ++
T Consensus 366 G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~~~l~~~~~-~~ 426 (608)
T 2bpl_A 366 GYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKG-LD 426 (608)
T ss_dssp TCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred CCCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHHHHHHHhcC-CC
No 46
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=43.28 E-value=1.1e+02 Score=27.88 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCC-
Q 018448 55 LGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT- 133 (355)
Q Consensus 55 L~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~- 133 (355)
-.|-.+.|..|+..+..- .+-+++++|..+.. ..+++.++..|... +=.|+| . .+....-+..-|++|+....+
T Consensus 222 ~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~~-~~l~~~~~~~~l~~-~v~~~g-~-~~~~~~~~~~adv~v~ps~~e~ 296 (394)
T 2jjm_A 222 KVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEF-CTILQLVKNLHIED-RVLFLG-K-QDNVAELLAMSDLMLLLSEKES 296 (394)
T ss_dssp GGGTHHHHHHHHHHHHHS-SCCEEEEECCCTTH-HHHHHHHHTTTCGG-GBCCCB-S-CSCTHHHHHTCSEEEECCSCCS
T ss_pred cccCHHHHHHHHHHHHhh-CCCEEEEECCchHH-HHHHHHHHHcCCCC-eEEEeC-c-hhhHHHHHHhCCEEEeccccCC
Confidence 345555666666555432 34678888876543 44566777665321 113444 2 333333456778877765322
Q ss_pred CchhHHHhhhcCCCEEEEecCCCCCCCc
Q 018448 134 DHQPIKEAALGNIPTIAFCDTDSPMRYV 161 (355)
Q Consensus 134 D~qaI~EAs~lnIPtIALcDTDs~p~~V 161 (355)
-...+.||...|+|+|+- |.....+.+
T Consensus 297 ~~~~~~EAma~G~PvI~~-~~~~~~e~v 323 (394)
T 2jjm_A 297 FGLVLLEAMACGVPCIGT-RVGGIPEVI 323 (394)
T ss_dssp CCHHHHHHHHTTCCEEEE-CCTTSTTTC
T ss_pred CchHHHHHHhcCCCEEEe-cCCChHHHh
Confidence 246789999999999985 444444443
No 47
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=42.80 E-value=54 Score=28.36 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=29.9
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 122 eP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
.+|.||+.....+...++++...+||+|.+ |++.+-..+++.-
T Consensus 57 ~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~ 99 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEKFAERGHSIVVL-DRTTEHRNIRQVL 99 (277)
T ss_dssp TCSEEEEECTTSCHHHHHHHHHTTCEEEES-SSCCCSTTEEEEE
T ss_pred cccEEEEecCCCCHHHHHHHHhcCCCEEEE-ecCCCCCCCCEEE
Confidence 689999887665667788888899999876 5544332344443
No 48
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.42 E-value=67 Score=28.31 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=29.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCCCce
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVD 162 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~p~~VD 162 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++.+-..++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~ 99 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAY-DRMINDADID 99 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEE-SSCCTTSCCS
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-CCcCCCCCce
Confidence 56888988875544 47889999999999876 5554444453
No 49
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=40.50 E-value=61 Score=33.08 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=45.3
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC-CC---------CCchhHHHhhh
Q 018448 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---------TDHQPIKEAAL 143 (355)
Q Consensus 74 n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD-P~---------~D~qaI~EAs~ 143 (355)
+..+|+++....+..+.+.+.-+..|.+..--++. +......-..||.||++. |. .+...++.+..
T Consensus 6 ~~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~----~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~ 81 (556)
T 3uow_A 6 EYDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG----VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE 81 (556)
T ss_dssp -CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT----CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEEECCCccHHHHHHHHHHCCCeEEEEECC----CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhh
Confidence 34578888877666666777777778765433331 112222223788888886 21 22233444555
Q ss_pred cCCCEEEEec
Q 018448 144 GNIPTIAFCD 153 (355)
Q Consensus 144 lnIPtIALcD 153 (355)
.++|+.+||-
T Consensus 82 ~g~PvLGIC~ 91 (556)
T 3uow_A 82 KKIPIFGICY 91 (556)
T ss_dssp TTCCEEEETH
T ss_pred cCCCEEEECH
Confidence 6999999983
No 50
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=40.36 E-value=58 Score=27.69 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=24.9
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEec
Q 018448 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 121 reP~LLVVtDP~~------------D~qaI~EAs~lnIPtIALcD 153 (355)
..+|.||+..+.. ....|+++...++|+.++|-
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 85 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCL 85 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEECh
Confidence 5678888877532 33577888788999999984
No 51
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=40.13 E-value=30 Score=26.85 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhh-CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCccc
Q 018448 62 LQMAARVIVAIE-NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (355)
Q Consensus 62 L~lAa~~I~aIe-n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLT 113 (355)
+.++.+.|..+. .+..+.++.+.+...+-|.++|+.+|-.+....--+|.++
T Consensus 15 vl~~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~~~~g~~~ 67 (87)
T 3hz7_A 15 VIRAKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGVIE 67 (87)
T ss_dssp HHHHHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEECGGGCEE
T ss_pred HHHHHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEEE
Confidence 344555666665 5666667888888999999999999998765443455444
No 52
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=39.93 E-value=43 Score=29.44 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=32.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|-||+.....+...+.++...+||+|.+ |++.+...+++...
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~ 108 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFDF 108 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEEc
Confidence 5789999988776668888999999999865 55444444555443
No 53
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=39.44 E-value=55 Score=32.24 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEe-C-CCCCchhHHHh
Q 018448 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT-D-PRTDHQPIKEA 141 (355)
Q Consensus 65 Aa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVt-D-P~~D~qaI~EA 141 (355)
|.+.+..+ +.+++|.+++.+.. ..+.+++...+...+.+.+.++.+. .-+++|+. | +..++....+|
T Consensus 24 a~~k~~~L~~~ga~V~vi~~~~~--~~~~~l~~~~~i~~~~~~~~~~~l~--------~~~lVi~at~~~~~n~~i~~~a 93 (457)
T 1pjq_A 24 AERKARLLLEAGARLTVNALTFI--PQFTVWANEGMLTLVEGPFDETLLD--------SCWLAIAATDDDTVNQRVSDAA 93 (457)
T ss_dssp HHHHHHHHHHTTBEEEEEESSCC--HHHHHHHTTTSCEEEESSCCGGGGT--------TCSEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCEEEEEcCCCC--HHHHHHHhcCCEEEEECCCCccccC--------CccEEEEcCCCHHHHHHHHHHH
Confidence 33333333 56778888876532 2344444444455555555544443 23555543 2 22467888999
Q ss_pred hhcCCCEEEEecCCCCCC----------CceEEecCCCCCcc
Q 018448 142 ALGNIPTIAFCDTDSPMR----------YVDIGIPANNKGKH 173 (355)
Q Consensus 142 s~lnIPtIALcDTDs~p~----------~VDypIP~NndS~~ 173 (355)
...|||+- .+|.-...+ -+.++|=.|-+|..
T Consensus 94 ~~~~i~vn-~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~ 134 (457)
T 1pjq_A 94 ESRRIFCN-VVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPV 134 (457)
T ss_dssp HHTTCEEE-ETTCTTSSSEECCEEEEETTEEEEEECTTSCHH
T ss_pred HHcCCEEE-ECCCcccCceEeeeEEEeCCeEEEEECCCCChH
Confidence 99999952 222211111 14677777766654
No 54
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=38.91 E-value=73 Score=27.19 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=24.0
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEec
Q 018448 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 121 reP~LLVVtDP~~------------D~qaI~EAs~lnIPtIALcD 153 (355)
..+|.||+..+.. ....|+++...++|+.|+|=
T Consensus 39 ~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 83 (200)
T 1ka9_H 39 EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICV 83 (200)
T ss_dssp SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTH
T ss_pred ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcH
Confidence 4567777765332 35678888888999999984
No 55
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=38.78 E-value=30 Score=27.41 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccC-cccccccCCceEEEeCCC-CCc
Q 018448 58 TWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPR-TDH 135 (355)
Q Consensus 58 TwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTN-qiq~~FreP~LLVVtDP~-~D~ 135 (355)
-.+.|..|+..+.. ...-++.++|..+.. ..+++.++..|. +-++ |.+.+ ....-++.-|++|..... .-.
T Consensus 16 g~~~li~a~~~l~~-~~~~~l~i~G~g~~~-~~~~~~~~~~~~---~v~~--g~~~~~~~~~~~~~adv~v~ps~~e~~~ 88 (166)
T 3qhp_A 16 NQSVLIKAVALSKY-KQDIVLLLKGKGPDE-KKIKLLAQKLGV---KAEF--GFVNSNELLEILKTCTLYVHAANVESEA 88 (166)
T ss_dssp THHHHHHHHHTCTT-GGGEEEEEECCSTTH-HHHHHHHHHHTC---EEEC--CCCCHHHHHHHHTTCSEEEECCCSCCCC
T ss_pred CHHHHHHHHHHhcc-CCCeEEEEEeCCccH-HHHHHHHHHcCC---eEEE--eecCHHHHHHHHHhCCEEEECCcccCcc
Confidence 34445555544321 123467778876543 456677777775 2233 55442 222345777887775532 224
Q ss_pred hhHHHhhhcCC-CEEEEe
Q 018448 136 QPIKEAALGNI-PTIAFC 152 (355)
Q Consensus 136 qaI~EAs~lnI-PtIALc 152 (355)
..+.||...|. |+|+-.
T Consensus 89 ~~~~Eama~G~vPvi~~~ 106 (166)
T 3qhp_A 89 IACLEAISVGIVPVIANS 106 (166)
T ss_dssp HHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhcCCCcEEeeC
Confidence 58899999997 999933
No 56
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=37.98 E-value=37 Score=31.74 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=27.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
..||+||.+.....--++.-|..++||+| +.+.|+
T Consensus 91 ~~PDvVi~~g~~~s~p~~laA~~~~iP~v-ihe~n~ 125 (365)
T 3s2u_A 91 LRPVCVLGLGGYVTGPGGLAARLNGVPLV-IHEQNA 125 (365)
T ss_dssp HCCSEEEECSSSTHHHHHHHHHHTTCCEE-EEECSS
T ss_pred cCCCEEEEcCCcchHHHHHHHHHcCCCEE-EEecch
Confidence 48999998887766666777899999998 445554
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=37.76 E-value=39 Score=35.31 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=66.3
Q ss_pred ccceeeecCCceeeeHH--HHHHHHHHHHHHHHHhhCCCcEE-EEccCchhHHHHHHHHHHcCCccccCCccCCcccCcc
Q 018448 40 RYVFKRRNDGIYIINLG--KTWEKLQMAARVIVAIENPGDII-VQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM 116 (355)
Q Consensus 40 ~YIygrR~dGI~IINL~--kTwekL~lAa~~I~aIen~g~IL-fVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi 116 (355)
..+|+.=+ ..+-||.. ++|-+|+ .+ -|+.+| +.......++-+++++++.|...--=.|.|.+-....
T Consensus 523 ~v~f~~fN-~~~Ki~p~~~~~W~~IL------~~--vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~ 593 (723)
T 4gyw_A 523 AIVYCNFN-QLYKIDPSTLQMWANIL------KR--VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEH 593 (723)
T ss_dssp SEEEECCS-CGGGCCHHHHHHHHHHH------HH--CSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHH
T ss_pred CEEEEeCC-ccccCCHHHHHHHHHHH------Hh--CCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHH
Confidence 36788764 77777753 3444443 33 355565 4566667788888999988875321123332211111
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEe
Q 018448 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALc 152 (355)
-..++.-|+.+=|=|-.-+.---||..+|+|||.+.
T Consensus 594 l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~ 629 (723)
T 4gyw_A 594 VRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMP 629 (723)
T ss_dssp HHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCC
T ss_pred HHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEcc
Confidence 123567787655557788999999999999999875
No 58
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=37.65 E-value=46 Score=25.26 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcc
Q 018448 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF 112 (355)
Q Consensus 63 ~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtL 112 (355)
.++.+.|..+..+..+.++.+.+...+-|.++|+..|-.++...--+|.+
T Consensus 25 l~~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~ 74 (82)
T 3lvj_C 25 MMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKETDGLPY 74 (82)
T ss_dssp HHHHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEECSSSSE
T ss_pred HHHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEE
Confidence 34445555555555566788888888899999999998876543334443
No 59
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=37.53 E-value=1.6e+02 Score=28.10 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=65.4
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCCc---cccCCccCCcccCcccccccCCc-eEEEeCCCCC---chhHHHhh
Q 018448 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD---HQPIKEAA 142 (355)
Q Consensus 73 en~g~ILfVsTr~~---~qraVlKfA~~tGa~---~IagRwtpGtLTNqiq~~FreP~-LLVVtDP~~D---~qaI~EAs 142 (355)
.+..+++|+|+... +.+.-+|+-+-+... |-++-|..|.+. .-.++ .+|++.+..+ ...++|..
T Consensus 221 ~~~~~~~~lGrG~~~~~A~EgALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~l~ 294 (366)
T 3knz_A 221 RDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYN------AFNAQSALIMLDPQPDARQDRLAQILG 294 (366)
T ss_dssp HTCSEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHHTHHH------HCCTTEEEEEECSSCCHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHHHHhcccceeechhhcCcCchh------hhCCCceEEEEecCchHHHHHHHHHHH
Confidence 46678999998753 456667776655432 233444444321 12222 3555565433 35677888
Q ss_pred hcCCCEEEEecCCCCCCCceEEecCCCCCcch-H--HHHHHHHHHHHHHhhcCC
Q 018448 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS-I--GCLFWLLARMVLQMRGTI 193 (355)
Q Consensus 143 ~lnIPtIALcDTDs~p~~VDypIP~NndS~~S-I--~Li~~lLareVL~~rGti 193 (355)
..+-++++|.+.+.. ...++.||...+..-+ + -..+++|+..+-..||..
T Consensus 295 ~~g~~vi~i~~~~~~-~~~~~~~p~~~~~~l~pl~~~v~~Qllay~~A~~rG~d 347 (366)
T 3knz_A 295 EWTPSIYRIGPQVEN-NGLNLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGIN 347 (366)
T ss_dssp HHCSCEEEEESSSCC-SSSSEECCCCCCTTTTHHHHHHHHHHHHHHCC------
T ss_pred HcCCeEEEEecCCCc-cceeEEeCCCCchHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 889999999876642 5678889875333222 2 344678888777777764
No 60
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.31 E-value=49 Score=28.86 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=29.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+..|.||+.....+...++++...+||+|.+ |++.+...+++.
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 105 (287)
T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAF-GRSNPDWDFAWV 105 (287)
T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEE-SCCSTTCCCCEE
T ss_pred CCCCEEEEeecCCCcHHHHHHHhcCCCEEEE-CCcCCCCCCCEE
Confidence 5688888877655556788888889999977 554332234443
No 61
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=37.27 E-value=66 Score=28.07 Aligned_cols=43 Identities=2% Similarity=-0.134 Sum_probs=28.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+.+|.||+.....+...++++...+||+|.+ |++.+-..+++.
T Consensus 66 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 108 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDEDLDELHRMHPKMVFL-NRAFDALPDASF 108 (290)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSEEEE-SSCCTTSGGGEE
T ss_pred cCccEEEEecCCCCHHHHHHHhhcCCCEEEE-ccccCCCCCCEE
Confidence 4678888876655556777887889999986 554432234544
No 62
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=36.48 E-value=45 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=29.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+..|.||+.....+...++++...+||+|.+ |++.+...+++.
T Consensus 58 ~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 100 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQRTHQLLEASNTPVLEI-AELSSKASYLNI 100 (275)
T ss_dssp SCCCCEEEESSCCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEE
Confidence 4678888877655556788888889999987 554333344443
No 63
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.32 E-value=42 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=32.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.||+.....+...++++...+||+|.+ |++.+...+++.-.
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~ 107 (291)
T 3egc_A 63 RRVDGLILAPSEGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVLS 107 (291)
T ss_dssp TTCSEEEECCCSSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHhhccCCCEEEE-ecccCCCCCCEEEE
Confidence 5678888887766778888898999999965 55554334555543
No 64
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=36.31 E-value=87 Score=26.92 Aligned_cols=43 Identities=5% Similarity=-0.055 Sum_probs=29.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhh-cCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~-lnIPtIALcDTDs~p~~VDyp 164 (355)
+.+|.||+.....+...+.++.. .+||+|.+ |++.+-..+++.
T Consensus 76 ~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~V 119 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSV 119 (296)
T ss_dssp TTCSEEEEECSSSCHHHHHHHHHTCSSCEEEE-SCCCSSSGGGEE
T ss_pred cCCCEEEEecCCCChHHHHHHHhcCCCCEEEE-ccccCCCCCCEE
Confidence 56888888766555567788877 89999876 554433344443
No 65
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=36.12 E-value=71 Score=33.40 Aligned_cols=71 Identities=7% Similarity=0.027 Sum_probs=47.5
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC----CCCCc--------hhHHHhh
Q 018448 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTDH--------QPIKEAA 142 (355)
Q Consensus 75 ~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD----P~~D~--------qaI~EAs 142 (355)
+++|+++.........+.+.....|.....-++-. ......+|.||++. |..+. ..|+++.
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~-------~~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHD-------AVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTC-------CCCGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCC-------cccccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 35789998877666777777788887654322211 12245689999973 33322 3567777
Q ss_pred hcCCCEEEEe
Q 018448 143 LGNIPTIAFC 152 (355)
Q Consensus 143 ~lnIPtIALc 152 (355)
..++|+.+||
T Consensus 519 ~~~iPiLGIC 528 (645)
T 3r75_A 519 DEGKPFMAVC 528 (645)
T ss_dssp HHTCCEEEET
T ss_pred HCCCCEEEEC
Confidence 8899999997
No 66
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}
Probab=35.68 E-value=1.3e+02 Score=28.57 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=41.4
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhc--CCCEEEEecCC-CCCC-Cce-----E--Eec--CCCCCcchH-HHHHHHH
Q 018448 121 NEPRLLILTDPRTD----HQPIKEAALG--NIPTIAFCDTD-SPMR-YVD-----I--GIP--ANNKGKHSI-GCLFWLL 182 (355)
Q Consensus 121 reP~LLVVtDP~~D----~qaI~EAs~l--nIPtIALcDTD-s~p~-~VD-----y--pIP--~NndS~~SI-~Li~~lL 182 (355)
.+.+++|++...-+ ..+++.|+.. |.++|+|++.. |++. ..| + .+| ++..+..+. .+...++
T Consensus 102 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~~S~La~~ad~~~~~~~l~~~~~~~e~~~a~t~s~t~~l~ 181 (384)
T 3c3j_A 102 AHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMA 181 (384)
T ss_dssp TSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHHHHTCTTBCCEECCGGGSCCSSSCSHHHHHHHH
T ss_pred CCCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHhhhccCCcEEEEEecCCCcceeeeehHHHHHHHH
Confidence 36688888875543 3467888888 99999999863 4432 234 4 444 344444332 3334444
Q ss_pred HHHHHHhhc
Q 018448 183 ARMVLQMRG 191 (355)
Q Consensus 183 areVL~~rG 191 (355)
+-.++...+
T Consensus 182 ~l~~L~~~~ 190 (384)
T 3c3j_A 182 SCLAVFAPE 190 (384)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHHhc
Confidence 445555443
No 67
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.38 E-value=46 Score=30.38 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=33.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|-||+.....+...+.++...+||+|.+ |++.+...+++...
T Consensus 127 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~ 171 (366)
T 3h5t_A 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAP 171 (366)
T ss_dssp CCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEE
T ss_pred CCCCEEEEecCCCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEe
Confidence 6789999998766777888888899999965 66554344566544
No 68
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=35.32 E-value=49 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=32.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCC-CceEEe
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR-YVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~-~VDypI 165 (355)
+.+|.||+.....+...++++...+||+|.+ |++.+.. .+++.-
T Consensus 68 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~~V~ 112 (292)
T 3k4h_A 68 RQIGGIILLYSRENDRIIQYLHEQNFPFVLI-GKPYDRKDEITYVD 112 (292)
T ss_dssp TCCCEEEESCCBTTCHHHHHHHHTTCCEEEE-SCCSSCTTTSCEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHHCCCCEEEE-CCCCCCCCCCCEEE
Confidence 5789999987776677888898999999876 5554332 255544
No 69
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=35.15 E-value=76 Score=28.94 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=44.6
Q ss_pred CCcEEEEcc-CchhHHHHHHHHHHcCCccccCCccCCc-ccCcccccccCCceEEEeCCCC---C--------chhHHHh
Q 018448 75 PGDIIVQSA-RPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSFNEPRLLILTDPRT---D--------HQPIKEA 141 (355)
Q Consensus 75 ~g~ILfVsT-r~~~qraVlKfA~~tGa~~IagRwtpGt-LTNqiq~~FreP~LLVVtDP~~---D--------~qaI~EA 141 (355)
+.+|+++-. ....-..+.+..+..|.....-+...|. +. .....+|.|||+.-.. | ...|+++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p----~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLP----AEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCC----SCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCc----CccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 346777643 3345566777788888754332222221 21 1345689999986321 1 2456777
Q ss_pred hhcCCCEEEEe
Q 018448 142 ALGNIPTIAFC 152 (355)
Q Consensus 142 s~lnIPtIALc 152 (355)
...++|+.+||
T Consensus 79 ~~~~~PvlGIC 89 (250)
T 3m3p_A 79 VAQRVPVIGHC 89 (250)
T ss_dssp HHHTCCEEEET
T ss_pred HHcCCCEEEEC
Confidence 77899999997
No 70
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=34.86 E-value=51 Score=29.08 Aligned_cols=45 Identities=9% Similarity=-0.125 Sum_probs=32.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|.||+.....+...+.++...+||+|.+ |++.+...+++...
T Consensus 82 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~ 126 (305)
T 3huu_A 82 KSVDGFILLYSLKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHIDN 126 (305)
T ss_dssp TCCSEEEESSCBTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEEC
T ss_pred CCCCEEEEeCCcCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEEe
Confidence 5789999887666667888888999999865 55544444555544
No 71
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=34.75 E-value=58 Score=28.16 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.||+..... ...++++...|||+|.+ |++.+...+++...
T Consensus 62 ~~vdgiIi~~~~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~ 105 (276)
T 3jy6_A 62 RGFDGLILQSFSN-PQTVQEILHQQMPVVSV-DREMDACPWPQVVT 105 (276)
T ss_dssp TTCSEEEEESSCC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEEC
T ss_pred CCCCEEEEecCCc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEEE
Confidence 4678888887666 67788888899999976 55444333555443
No 72
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=34.67 E-value=75 Score=28.35 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEE-EEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCC
Q 018448 56 GKTWEKLQMAARVIVAIENPGDII-VQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (355)
Q Consensus 56 ~kTwekL~lAa~~I~aIen~g~IL-fVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D 134 (355)
++-.+.|..|+..+.. +-.++ ++|..+ .+.+++.++..|.. +=+|+| .. +....-+..-|++|... .
T Consensus 196 ~k~~~~li~a~~~l~~---~~~~l~i~G~~~--~~~l~~~~~~~~~~--~v~~~g-~~-~~~~~~~~~ad~~v~~s-g-- 263 (364)
T 1f0k_A 196 RILNQTMPQVAAKLGD---SVTIWHQSGKGS--QQSVEQAYAEAGQP--QHKVTE-FI-DDMAAAYAWADVVVCRS-G-- 263 (364)
T ss_dssp HHHHHHHHHHHHHHGG---GEEEEEECCTTC--HHHHHHHHHHTTCT--TSEEES-CC-SCHHHHHHHCSEEEECC-C--
T ss_pred HHHHHHHHHHHHHhcC---CcEEEEEcCCch--HHHHHHHHhhcCCC--ceEEec-ch-hhHHHHHHhCCEEEECC-c--
Confidence 4444555555544432 33433 355554 24455666665532 113333 22 33333455667776653 2
Q ss_pred chhHHHhhhcCCCEEEE
Q 018448 135 HQPIKEAALGNIPTIAF 151 (355)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (355)
...+.||...|+|+|+.
T Consensus 264 ~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 264 ALTVSEIAAAGLPALFV 280 (364)
T ss_dssp HHHHHHHHHHTCCEEEC
T ss_pred hHHHHHHHHhCCCEEEe
Confidence 68899999999999986
No 73
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=34.67 E-value=38 Score=31.59 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCCCC-ceEEecCCC--------CCcchHHHHHHHHHHHH
Q 018448 122 EPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPMRY-VDIGIPANN--------KGKHSIGCLFWLLARMV 186 (355)
Q Consensus 122 eP~LLVVtD-P~~D~qaI~EAs~lnIPtIALcDTDs~p~~-VDypIP~Nn--------dS~~SI~Li~~lLareV 186 (355)
.||++|++. ..+....+.=+...+.+||+|++.+|++.. .|+.|+... +|..+.-+++.+|+..+
T Consensus 79 ~~dlvI~iS~SG~T~e~l~a~~~aka~viaIT~~~S~La~~ad~~l~~~~~e~~~a~t~s~~~~l~~l~~L~~~~ 153 (325)
T 2e5f_A 79 EVELAVGISRSGETTEILLALEKINVKKLGITTRESSLTRMCDYSLVVPAIEESVVMTHSFTSFYFAYLQLLRYS 153 (325)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHTCCSCEEEEESSSCHHHHHSSEEEECCCCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHhCCCEEEEECCCCHHHHhcCEEEecCCccceecccHHHHHHHHHHHHHHHHH
No 74
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=34.42 E-value=38 Score=25.17 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCccc
Q 018448 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (355)
Q Consensus 64 lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLT 113 (355)
++.+.|..++.+..+.++.+.+...+-|.++|+..|-.++...=.+|.+.
T Consensus 22 ~~k~al~~l~~G~~L~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~~ 71 (78)
T 1pav_A 22 ELIKAYKQAKVGEVISVYSTDAGTKKDAPAWIQKSGQELVGVFDRNGYYE 71 (78)
T ss_dssp HHHHHHTTSCTTCCEECCBSSSCHHHHHHHHHHHHTEEECCCCCCSSCBC
T ss_pred HHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEEE
Confidence 33444445545555667788888889999999999987655333456544
No 75
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=34.31 E-value=69 Score=27.11 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=36.8
Q ss_pred CcEEEEccC---chhHHHHHHHHHHcCCccccC--------------Cc--cC--CcccCc-cc---ccccCCceEEEeC
Q 018448 76 GDIIVQSAR---PYGQRAVLKFAKYTHAHAIAG--------------RH--TP--GTFTNQ-MQ---TSFNEPRLLILTD 130 (355)
Q Consensus 76 g~ILfVsTr---~~~qraVlKfA~~tGa~~Iag--------------Rw--tp--GtLTNq-iq---~~FreP~LLVVtD 130 (355)
.-+++++.. ....+.+.+||+++|+..++. .+ .| |...+. .. ....+-|+||++.
T Consensus 36 rPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~iG 115 (170)
T 3cf4_G 36 RPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIG 115 (170)
T ss_dssp SEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEES
T ss_pred CCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHHHhhcCCEEEEEC
Confidence 446777663 456788999999999876553 11 11 111111 11 3467899999999
Q ss_pred CCC
Q 018448 131 PRT 133 (355)
Q Consensus 131 P~~ 133 (355)
.+-
T Consensus 116 ~~~ 118 (170)
T 3cf4_G 116 FKK 118 (170)
T ss_dssp CCH
T ss_pred Ccc
Confidence 876
No 76
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=34.26 E-value=55 Score=28.68 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=28.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+.+|.||+.....+...++++...+||+|.+ |++.+-..+++.
T Consensus 71 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 113 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLA-ASVEEQEETPSV 113 (289)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEE-SCCCTTCCSCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCEEEE-ccccCCCCCCEE
Confidence 4567788776555556788888889999987 554332234443
No 77
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=34.17 E-value=40 Score=27.58 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH--HcCCccccCCccCCcccCc-ccccccCCceEEEeCCC
Q 018448 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK--YTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR 132 (355)
Q Consensus 56 ~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~--~tGa~~IagRwtpGtLTNq-iq~~FreP~LLVVtDP~ 132 (355)
.|=++.|..|+..+ ..-++++++..+...+ +++.++ ..|..- +-+|+ |.+.+. ...-++.-|++|+....
T Consensus 35 ~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~-l~~~~~~~~~~l~~-~v~~~-g~~~~~e~~~~~~~adi~v~ps~~ 107 (177)
T 2f9f_A 35 EKRIELQLEVFKKL----QDEKLYIVGWFSKGDH-AERYARKIMKIAPD-NVKFL-GSVSEEELIDLYSRCKGLLCTAKD 107 (177)
T ss_dssp GGTHHHHHHHHHHC----TTSCEEEEBCCCTTST-HHHHHHHHHHHSCT-TEEEE-ESCCHHHHHHHHHHCSEEEECCSS
T ss_pred ccCHHHHHHHHHhC----CCcEEEEEecCccHHH-HHHHHHhhhcccCC-cEEEe-CCCCHHHHHHHHHhCCEEEeCCCc
Confidence 34344444444433 3457888887654432 334444 222210 11232 333332 22235666777764322
Q ss_pred -CCchhHHHhhhcCCCEEEE
Q 018448 133 -TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 133 -~D~qaI~EAs~lnIPtIAL 151 (355)
.-...+.||...|+|+|+-
T Consensus 108 e~~~~~~~Eama~G~PvI~~ 127 (177)
T 2f9f_A 108 EDFGLTPIEAMASGKPVIAV 127 (177)
T ss_dssp CCSCHHHHHHHHTTCCEEEE
T ss_pred CCCChHHHHHHHcCCcEEEe
Confidence 2245789999999999985
No 78
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=33.99 E-value=34 Score=29.93 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=24.8
Q ss_pred cccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 119 SFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 119 ~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
.--.|||||..+-......+..-+..||||+.+
T Consensus 56 ~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (255)
T 3md9_A 56 LAMKPTMLLVSELAQPSLVLTQIASSGVNVVTV 88 (255)
T ss_dssp HTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred HccCCCEEEEcCCcCchhHHHHHHHcCCcEEEe
Confidence 346999999887554445667777889999987
No 79
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=33.83 E-value=51 Score=28.95 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=30.8
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCC----CCceEEec
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM----RYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~p----~~VDypIP 166 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++.+. ..+++.-.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~~~~~~~~~~~V~~ 110 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAV-DTRPKDKTKNPYLVFLGS 110 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEE-SCCCSCTTTSCCSCEEEC
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEE-cCCCccccccCcceEEcc
Confidence 46788888765555 67889999999999976 554443 34555443
No 80
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=33.69 E-value=70 Score=30.03 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=48.3
Q ss_pred hhCCCcEEEEccCchh---HHHHHHHHHHcCCccccCCccCCcccCcccccc-cCCceEEEeCCCCC----chhHHHhhh
Q 018448 72 IENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF-NEPRLLILTDPRTD----HQPIKEAAL 143 (355)
Q Consensus 72 Ien~g~ILfVsTr~~~---qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~F-reP~LLVVtDP~~D----~qaI~EAs~ 143 (355)
+.+.++|.|++....+ +.+-.++....|..... ..+..+ ....... ..||++|++...-+ ..+++.|+.
T Consensus 49 l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~--~~~~~~-~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~ 125 (342)
T 1j5x_A 49 KNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA--IPAGEV-AFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKK 125 (342)
T ss_dssp ---CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEE--EEHHHH-HTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEchHHHHHHHHHHHHHHHhhCCeEEE--ECchHH-HhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566789999887532 22222222224543211 112222 0111112 22488888875544 447788999
Q ss_pred cCCCEEEEecC-CCCCC-CceEEecC
Q 018448 144 GNIPTIAFCDT-DSPMR-YVDIGIPA 167 (355)
Q Consensus 144 lnIPtIALcDT-Ds~p~-~VDypIP~ 167 (355)
.|+++|+|+|. +|++. ..|+.|+.
T Consensus 126 ~Ga~vIaIT~~~~S~La~~ad~~l~~ 151 (342)
T 1j5x_A 126 RNHRTIGITIEEESRLAKESDLPLVF 151 (342)
T ss_dssp TTEEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCEEEEECCCCCHHHHhcCEEEEc
Confidence 99999999986 45442 34544433
No 81
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=33.47 E-value=3.2e+02 Score=26.31 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=71.5
Q ss_pred CCCcEEEEccCc---hhHHHHHHHHHHc-CC----ccccCCccCCcccCcccccccCCc-eEEEeCCCC------CchhH
Q 018448 74 NPGDIIVQSARP---YGQRAVLKFAKYT-HA----HAIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRT------DHQPI 138 (355)
Q Consensus 74 n~g~ILfVsTr~---~~qraVlKfA~~t-Ga----~~IagRwtpGtLTNqiq~~FreP~-LLVVtDP~~------D~qaI 138 (355)
+..+++|+|+.. .+.+.-+|+-+-+ |. .+.++-|..|.+. .-.++ .+|++.+.. ++..+
T Consensus 229 ~~~~~~~lGrG~~~~~A~E~ALKlkE~s~g~i~a~~~~~~e~~HGP~a------lvd~~~pvi~~~~~d~~t~~~~~~~~ 302 (393)
T 3odp_A 229 KFKRTVYLGAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKS------IIDDETLIVIFFSNDTYAREYEYDLL 302 (393)
T ss_dssp CCSEEEEECCTHHHHHHHHHHHHHHHHTTSSSEEEEECHHHHTTTGGG------GCCTTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcCHHHHHHHHHHHHHHhhccchheeecHhhheecccc------ccCCCceEEEEEcCCchhhHHHHHHH
Confidence 557888999875 3567777887766 22 2334445666542 12222 344444442 44688
Q ss_pred HHhhhcC--CCEEEEecCCC----CCCCceEEec-----CCCCCcchHH--HHHHHHHHHHHHhhcCCCCCCCc
Q 018448 139 KEAALGN--IPTIAFCDTDS----PMRYVDIGIP-----ANNKGKHSIG--CLFWLLARMVLQMRGTIRPGHKW 199 (355)
Q Consensus 139 ~EAs~ln--IPtIALcDTDs----~p~~VDypIP-----~NndS~~SI~--Li~~lLareVL~~rGtis~~~~w 199 (355)
+|....| -.+|+|+|.+. ......+.|| ..++-...+- +.+++|+..+-..||.. .+.|.
T Consensus 303 ~ev~arg~~~~vi~i~~~~~~~~~~~~~~~i~~p~~~~~~~~~~l~pi~~~ip~Qllay~~A~~~G~d-pD~Pr 375 (393)
T 3odp_A 303 KEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQEYEDDSFLSLDYLLNAQMYAFINSMELGIG-PDNPC 375 (393)
T ss_dssp HHHHHSSSCCEEEEEEEECCHHHHTTCSEEEEEESSCCCCSSGGGGHHHHHHHHHHHHHHHHHHHTCC-TTCSC
T ss_pred HHHHhcCCCceEEEEEcCCcchhccCCcEEEEeCCccccCCChHHhHHHHHHHHHHHHHHHHHHcCCC-CCCCC
Confidence 9999988 89999988642 1223445578 3333333332 33788999998889875 34443
No 82
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.37 E-value=1e+02 Score=27.77 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhhC----------CCcEEEEcc---CchhHH---HHHHHHHHcCCccccCCccCCcccCccc--
Q 018448 56 GKTWEKLQMAARVIVAIEN----------PGDIIVQSA---RPYGQR---AVLKFAKYTHAHAIAGRHTPGTFTNQMQ-- 117 (355)
Q Consensus 56 ~kTwekL~lAa~~I~aIen----------~g~ILfVsT---r~~~qr---aVlKfA~~tGa~~IagRwtpGtLTNqiq-- 117 (355)
..|-++++.|++-+-...| ...|-++-. .++..+ .+.+.|+..|-..+-. ...+....+..
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~i 117 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG-VTDYLPEKEEKVL 117 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE-ECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE-eCCCCHHHHHHHH
Confidence 4788888888877643211 234555432 334443 3444455555443221 11111111100
Q ss_pred --ccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 018448 118 --TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (355)
Q Consensus 118 --~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p 158 (355)
..-+.+|.||+.....+...+.++...+||+|.+-|.+.+.
T Consensus 118 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~ 160 (344)
T 3kjx_A 118 YEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGKP 160 (344)
T ss_dssp HHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSCC
T ss_pred HHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 01257899999887767777888888999999997655433
No 83
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=33.00 E-value=1.2e+02 Score=27.84 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=32.9
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D----~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
.+.|++|++...-+ ..+++.|+..|+++|+|+|.. ++.-.|+.+
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~-~La~~~~~l 125 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG-RLAQMGVPT 125 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST-TGGGSSSCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc-hHHHCCeeE
Confidence 66788888875544 347889999999999999987 654335555
No 84
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=32.83 E-value=63 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=30.4
Q ss_pred cCCceEEEeCCC-CCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~-~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+.+|.||+.... .+...++++...|||+|.+ |++.+...+++...
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~ 102 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVIS 102 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEEE
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEE-ccCCCccccCEEEE
Confidence 467888877654 3467788888999999865 55544444555443
No 85
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.62 E-value=72 Score=27.58 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=31.5
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCCCC-CCceEEecC
Q 018448 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPA 167 (355)
Q Consensus 121 reP~LLVVtDP~~D~--qaI~EAs~lnIPtIALcDTDs~p-~~VDypIP~ 167 (355)
+.+|.||+.....+. ..++++...+||+|.+ |++.+. ..+++.-.-
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~D 111 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAI-DRMIRSDAVVSSITSN 111 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEE-SSCCCCTTCSEEEEEC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEe-cCCCCCCcceeEEecC
Confidence 568888887655444 6788998999999887 554443 345555443
No 86
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=32.25 E-value=55 Score=25.98 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCcc-CCcc
Q 018448 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHT-PGTF 112 (355)
Q Consensus 64 lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwt-pGtL 112 (355)
++.+.|..++.+..+.++.+.+...+-|.++|+..|-.++...-. +|.+
T Consensus 42 ~tkkaL~~l~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e~~~~g~~ 91 (98)
T 1jdq_A 42 ETKRALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSEW 91 (98)
T ss_dssp HHHHHHHTCCTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEEECSSSCE
T ss_pred HHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEecCCEE
Confidence 444455555555556678888888899999999999876554333 3543
No 87
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=32.25 E-value=42 Score=30.07 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=25.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSP 157 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~ 157 (355)
+.+|.||+.....+ ...++++...|||+|.+ |++.+
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~-d~~~~ 96 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW-DSDTK 96 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCCC
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEe-cCCCC
Confidence 56788887644333 45788888899999987 55443
No 88
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.23 E-value=54 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=30.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|.||+.....+...+++... +||+|.+ |++.+...+++...
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~~~~-~iPvV~i-~~~~~~~~~~~V~~ 108 (289)
T 3k9c_A 65 ERCEAAILLGTRFDTDELGALAD-RVPALVV-ARASGLPGVGAVRG 108 (289)
T ss_dssp TTEEEEEEETCCCCHHHHHHHHT-TSCEEEE-SSCCSSTTSEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHc-CCCEEEE-cCCCCCCCCCEEEe
Confidence 56789999887767777888777 9999965 55544344555544
No 89
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.61 E-value=52 Score=26.17 Aligned_cols=43 Identities=14% Similarity=-0.069 Sum_probs=29.7
Q ss_pred chhHHHHHhhhhch------HHHHHHHhhh--hHHHHHHHHHHHHHHhhhc
Q 018448 308 TNFILREFCFNHFK------PLLLQLCVSL--NFFMFCKELWLFSFFFWHS 350 (355)
Q Consensus 308 ~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 350 (355)
..=+|-+||+++.+ -+..||...| +--.||++||-.-.+.--|
T Consensus 33 eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~s 83 (92)
T 1x4q_A 33 SEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRSS 83 (92)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSCS
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 44567889988765 4666666544 3567999999877665433
No 90
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=31.59 E-value=58 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=21.1
Q ss_pred cCCceEEEeCCCCC---------chhHHHhhhcCCCEEEEec
Q 018448 121 NEPRLLILTDPRTD---------HQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 121 reP~LLVVtDP~~D---------~qaI~EAs~lnIPtIALcD 153 (355)
...|.||+..+..- ...++++...++|+.++|-
T Consensus 39 ~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGICl 80 (211)
T 4gud_A 39 LAADKLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICL 80 (211)
T ss_dssp HHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETH
T ss_pred hCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEch
Confidence 34567777554321 1235667778999999983
No 91
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}
Probab=31.53 E-value=3.6e+02 Score=25.94 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHcC-C----ccccCCccCCcccCcccccccCCce-EEEeCCCC------CchhH
Q 018448 74 NPGDIIVQSARPY---GQRAVLKFAKYTH-A----HAIAGRHTPGTFTNQMQTSFNEPRL-LILTDPRT------DHQPI 138 (355)
Q Consensus 74 n~g~ILfVsTr~~---~qraVlKfA~~tG-a----~~IagRwtpGtLTNqiq~~FreP~L-LVVtDP~~------D~qaI 138 (355)
+..+++|+|+... +.+.-+|+-+-+. . .+..+-+..|.+. .-.++. +|++.+.. +...+
T Consensus 229 ~~~~~~~lGrG~~y~~A~EgALKlkE~s~Gei~a~~~~~~e~kHGP~a------lid~~~pVi~~~~~d~~~~~~~~~~~ 302 (389)
T 3i0z_A 229 DFNRVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKS------LINDNTVVLVFGTTTDYTRKYDLDLV 302 (389)
T ss_dssp CCSEEEEEESTHHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTTTGGG------GCCTTEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHHccCcccceeecHhhccccchh------hcCCCceEEEEEcCCchhhHHHHHHH
Confidence 5578889998753 4566677777662 1 2222335555432 223333 44445542 24578
Q ss_pred HHhhhc--CCCEEEEecCCCCCCC-ceEEec---CCCCCcchHH--HHHHHHHHHHHHhhcCCCCCCC
Q 018448 139 KEAALG--NIPTIAFCDTDSPMRY-VDIGIP---ANNKGKHSIG--CLFWLLARMVLQMRGTIRPGHK 198 (355)
Q Consensus 139 ~EAs~l--nIPtIALcDTDs~p~~-VDypIP---~NndS~~SI~--Li~~lLareVL~~rGtis~~~~ 198 (355)
+|.... +-.+|+|.+.+..... .|+.|| .-++-...+- ..+++|+-.+-..||... +.|
T Consensus 303 ~ev~arg~g~~vi~i~~~~~~~~~~~~~~i~~~~~~~~~l~pl~~~vp~QllAy~~A~~rG~dp-D~P 369 (389)
T 3i0z_A 303 REVAGDQIARRVVLLSDQAFGLENVKEVALGCGGVLNDIYRVFPYIVYAQLFALLTSLKVENKP-DTP 369 (389)
T ss_dssp HHHHHHTCSSEEEEEESSCCCCTTCEEEECCCSSCSCGGGGHHHHHHHHHHHHHHHHHHTTCCT-TSC
T ss_pred HHHHhccCCCeEEEEECCCcccccCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC
Confidence 898876 5799999986644332 456666 2333333332 337889999999998753 444
No 92
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=31.31 E-value=62 Score=29.17 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcc-cccccCCceEEEeCC--CC
Q 018448 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDP--RT 133 (355)
Q Consensus 57 kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi-q~~FreP~LLVVtDP--~~ 133 (355)
|-.+.|..|+..+..-...-++.++|..+. ..+++.++.. .. +=+| -|.+.+.. ..-++.-|++|+... ..
T Consensus 222 Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~l~~~~~~~-~~--~v~~-~g~~~~~~~~~~~~~adv~v~ps~~~e~ 295 (406)
T 2gek_A 222 KGMAVLLAALPKLVARFPDVEILIVGRGDE--DELREQAGDL-AG--HLRF-LGQVDDATKASAMRSADVYCAPHLGGES 295 (406)
T ss_dssp GCHHHHHHHHHHHHTTSTTCEEEEESCSCH--HHHHHHTGGG-GG--GEEE-CCSCCHHHHHHHHHHSSEEEECCCSCCS
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEEcCCcH--HHHHHHHHhc-cC--cEEE-EecCCHHHHHHHHHHCCEEEecCCCCCC
Confidence 334445555544433222457788888776 4455554443 11 1123 34444421 233566788777642 22
Q ss_pred CchhHHHhhhcCCCEEEE
Q 018448 134 DHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 134 D~qaI~EAs~lnIPtIAL 151 (355)
-...+.||...|+|+|+-
T Consensus 296 ~~~~~~Ea~a~G~PvI~~ 313 (406)
T 2gek_A 296 FGIVLVEAMAAGTAVVAS 313 (406)
T ss_dssp SCHHHHHHHHHTCEEEEC
T ss_pred CchHHHHHHHcCCCEEEe
Confidence 245799999999999984
No 93
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.23 E-value=59 Score=28.55 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=27.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~ 157 (355)
+..|.||+.....+...+.++...+||+|.+ |++.+
T Consensus 67 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~~ 102 (295)
T 3hcw_A 67 RMVDAFILLYSKENDPIKQMLIDESMPFIVI-GKPTS 102 (295)
T ss_dssp TCCSEEEESCCCTTCHHHHHHHHTTCCEEEE-SCCCS
T ss_pred CCcCEEEEcCcccChHHHHHHHhCCCCEEEE-CCCCc
Confidence 5678888887666667788888999999866 55443
No 94
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=31.05 E-value=40 Score=29.44 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=24.8
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 117 q~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
...--.|||||..+...+...+..-++.+|||+.+
T Consensus 54 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 54 GILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp HHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred HHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEe
Confidence 33346899999876543445566667899999876
No 95
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.39 E-value=1.2e+02 Score=27.53 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=29.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|-||+.....+...+.++...+||+|.+-+...
T Consensus 125 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~ 160 (355)
T 3e3m_A 125 RRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPA 160 (355)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCccC
Confidence 678999998877777778888899999999855433
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=29.12 E-value=1.6e+02 Score=28.52 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCc-----------------------
Q 018448 56 GKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT----------------------- 111 (355)
Q Consensus 56 ~kTwekL~lAa~~I~aI-en~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGt----------------------- 111 (355)
-++--|+..--+++..+ +.+.+|+++|.....-..++.++...|-.|. -+.|+
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~---RlDG~~~~~~~k~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIK---RYDGHSIKSAAAANDFSCTVHLFSSEGI 181 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEE---ESSSCCC-------CCSEEEEEEESSCC
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceE---eCCCCchhhhhhcccCCceEEEEECCCC
Confidence 34556677777777777 6777999999888888899988887655432 12222
Q ss_pred -ccCcccccccCCceEEEeCCCCC-----chhH----HH--hhhcCCCEEEEecCCCCCCCceEEec--CCCCCcchHHH
Q 018448 112 -FTNQMQTSFNEPRLLILTDPRTD-----HQPI----KE--AALGNIPTIAFCDTDSPMRYVDIGIP--ANNKGKHSIGC 177 (355)
Q Consensus 112 -LTNqiq~~FreP~LLVVtDP~~D-----~qaI----~E--As~lnIPtIALcDTDs~p~~VDypIP--~NndS~~SI~L 177 (355)
-.|.......-+|.||+.|+.-| -||+ |. ...-..||+=|+=++| .+.+-.-+| .|.++ -.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T-iEh~~l~~~~~~~~~~---~~~ 257 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS-IDHCRLFFGKKFDKNS---REY 257 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS-HHHHHHHHHHHTCTTC---HHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC-HHHHHHHccCCCCcch---HHH
Confidence 12211112467899999996543 3445 33 2345779999987776 233333333 23332 344
Q ss_pred HHHHHHHHHHHhhcCC
Q 018448 178 LFWLLARMVLQMRGTI 193 (355)
Q Consensus 178 i~~lLareVL~~rGti 193 (355)
...+++ ++...|..+
T Consensus 258 l~k~i~-a~v~lrd~~ 272 (328)
T 3hgt_A 258 LENVTA-AMVILRDRL 272 (328)
T ss_dssp HHHHHH-HHHHGGGST
T ss_pred HHHHHH-HHHHHHhhh
Confidence 444433 444466554
No 97
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.91 E-value=77 Score=23.98 Aligned_cols=74 Identities=7% Similarity=-0.034 Sum_probs=37.7
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccc----cccCCceEEEeCCCCCchhHHHhhh-c-CCC
Q 018448 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTDPRTDHQPIKEAAL-G-NIP 147 (355)
Q Consensus 74 n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~----~FreP~LLVVtDP~~D~qaI~EAs~-l-nIP 147 (355)
++.+|++|...+.....+.+..+..|.... ..++.... .-..||++| .........+++... - ++|
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMAD-------VTESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEE-------EeCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhcCCCcc
Confidence 345677777766666666555555443211 11111110 124689888 332222333444433 3 789
Q ss_pred EEEEecCC
Q 018448 148 TIAFCDTD 155 (355)
Q Consensus 148 tIALcDTD 155 (355)
+|.+.+.+
T Consensus 89 ii~ls~~~ 96 (137)
T 2pln_A 89 VLVSSDNP 96 (137)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99987654
No 98
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=28.78 E-value=75 Score=27.98 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=30.9
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCEEEEecCCCCCCCceEEec
Q 018448 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~D~q-aI~EAs~lnIPtIALcDTDs~p~~VDypIP 166 (355)
+..|-||+.....+.. .+.++.. +||+|.+ |++.+. .+++...
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i-~~~~~~-~~~~V~~ 113 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVLE-GVPAVTI-NSRVPG-RVGSVIL 113 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHHT-TSCEEEE-SCCCTT-CCCEEEE
T ss_pred CCCcEEEEecCCCCcHHHHHHHhC-CCCEEEE-CCcCCC-CCCEEEE
Confidence 5789999887766666 7888888 9999876 555443 4555543
No 99
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.76 E-value=1.1e+02 Score=23.35 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=41.6
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCc-ccCcccccc-cCCceEEEeCCC-CCch---hHHHhh--hcC
Q 018448 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSF-NEPRLLILTDPR-TDHQ---PIKEAA--LGN 145 (355)
Q Consensus 74 n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGt-LTNqiq~~F-reP~LLVVtDP~-~D~q---aI~EAs--~ln 145 (355)
++.+|++|...+.....+.+..+..|.+-+.. ...|. .-... ..- ..||+||+ |.. .+.. .+++.. .-+
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~-~~~~~~~~~~~-~~~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~~~ 95 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTR-TVGRAAQIVQR-TDGLDAFDILMI-DGAALDTAELAAIEKLSRLHPG 95 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEE-ECCCHHHHTTC-HHHHTTCSEEEE-ECTTCCHHHHHHHHHHHHHCTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEE-eCCHHHHHHHH-HhcCCCCCEEEE-eCCCCCccHHHHHHHHHHhCCC
Confidence 34678888888877777777777766333322 11111 10100 011 46887655 533 3322 222222 347
Q ss_pred CCEEEEecCCC
Q 018448 146 IPTIAFCDTDS 156 (355)
Q Consensus 146 IPtIALcDTDs 156 (355)
+|+|.+.+.+.
T Consensus 96 ~~ii~lt~~~~ 106 (146)
T 4dad_A 96 LTCLLVTTDAS 106 (146)
T ss_dssp CEEEEEESCCC
T ss_pred CcEEEEeCCCC
Confidence 89998876543
No 100
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=27.98 E-value=1e+02 Score=27.84 Aligned_cols=90 Identities=9% Similarity=-0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhh--CCCcEEEEccCchh-HHHHHHHHHHcCCccccCCccCCcccCc-ccccccCCceEEEeCCC-
Q 018448 58 TWEKLQMAARVIVAIE--NPGDIIVQSARPYG-QRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR- 132 (355)
Q Consensus 58 TwekL~lAa~~I~aIe--n~g~ILfVsTr~~~-qraVlKfA~~tGa~~IagRwtpGtLTNq-iq~~FreP~LLVVtDP~- 132 (355)
-.+.|..|+..+..-. ..-+++++|..+.. .+.+++.++..| ......|.+... ...-+..-|++|+..-.
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~----~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e 341 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFE 341 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECBSCC
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC----CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCC
Confidence 3455555555554321 34567778876532 255677777777 223345644432 22335677887776533
Q ss_pred CCchhHHHhhhcCCCEEEE
Q 018448 133 TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 133 ~D~qaI~EAs~lnIPtIAL 151 (355)
.-...+.||...|+|+|+-
T Consensus 342 ~~~~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 342 PFGLVALEAMCLGAIPIAS 360 (439)
T ss_dssp SSCHHHHHHHHTTCEEEEE
T ss_pred CccHHHHHHHHCCCCeEEc
Confidence 2246789999999999995
No 101
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=27.09 E-value=42 Score=32.13 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDT 154 (355)
..||+|++.+....--+..-|.+.|||++ .+..
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~ea 125 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEA 125 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESC
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeC
Confidence 58999999987766666788999999964 5544
No 102
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=26.88 E-value=1.2e+02 Score=27.54 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchh-----HHHHHHHHHHcCCcccc-----CCccCCcccCc-ccccccCCc
Q 018448 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYG-----QRAVLKFAKYTHAHAIA-----GRHTPGTFTNQ-MQTSFNEPR 124 (355)
Q Consensus 56 ~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~-----qraVlKfA~~tGa~~Ia-----gRwtpGtLTNq-iq~~FreP~ 124 (355)
.|=.+.|..|+..+..-...-+++++|..+.. ...+++.++..|...-. --+..|.+.+. ...-++.-|
T Consensus 196 ~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~ad 275 (413)
T 3oy2_A 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACD 275 (413)
T ss_dssp GGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCS
T ss_pred hcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCC
Confidence 45566666776665543334578888876532 36677777777654210 01234554432 222355667
Q ss_pred eEEEeCCC-CCchhHHHhhhcCCCEEEE
Q 018448 125 LLILTDPR-TDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 125 LLVVtDP~-~D~qaI~EAs~lnIPtIAL 151 (355)
++|+..-. .-...+.||...|+|+|+-
T Consensus 276 v~v~pS~~E~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 276 VIVNCSSGEGFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp EEEECCSCCSSCHHHHHHHTTTCCEEEE
T ss_pred EEEeCCCcCCCCcHHHHHHHcCCCEEEc
Confidence 77765432 1235789999999999983
No 103
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=26.45 E-value=43 Score=29.13 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=22.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
-.|||||..+...+...+..-++.+|||+.+
T Consensus 56 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 86 (245)
T 1n2z_A 56 LKPDLVIAWRGGNAERQVDQLASLGIKVMWV 86 (245)
T ss_dssp TCCSEEEECTTTSCHHHHHHHHHHTCCEEEC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHCCCcEEEe
Confidence 6899998864333445566677889999865
No 104
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=26.43 E-value=1.5e+02 Score=25.42 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=24.8
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~--qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.||+.....+. ..++++...+||+|.+ |+..
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 100 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVI-DSGM 100 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE-SSCC
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEE-CCCC
Confidence 467888887655443 5677888889999876 5543
No 105
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=26.42 E-value=55 Score=29.26 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=23.5
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 018448 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 120 FreP~LLVVtDP~~D~qaI~EAs~lnIPtIAL 151 (355)
--.|||||..+...+...+..-++.+|||+.+
T Consensus 57 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 57 ALRPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp TTCCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred hcCCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 36899998866433445667777899999876
No 106
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=26.39 E-value=1.2e+02 Score=26.94 Aligned_cols=87 Identities=8% Similarity=0.046 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcc-cccccCCceEEEeCC--
Q 018448 55 LGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDP-- 131 (355)
Q Consensus 55 L~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqi-q~~FreP~LLVVtDP-- 131 (355)
-.|=.+.|..|+..+ .-+++++|..+. ...+++.++..|. .| +| -|...+.. ..-++.-|++|+...
T Consensus 173 ~~Kg~~~li~a~~~~-----~~~l~i~G~g~~-~~~l~~~~~~~~~-~v--~~-~g~~~~~~l~~~~~~adv~v~ps~~~ 242 (342)
T 2iuy_A 173 PHKGALEAAAFAHAC-----GRRLVLAGPAWE-PEYFDEITRRYGS-TV--EP-IGEVGGERRLDLLASAHAVLAMSQAV 242 (342)
T ss_dssp GGGTHHHHHHHHHHH-----TCCEEEESCCCC-HHHHHHHHHHHTT-TE--EE-CCCCCHHHHHHHHHHCSEEEECCCCC
T ss_pred cccCHHHHHHHHHhc-----CcEEEEEeCccc-HHHHHHHHHHhCC-CE--EE-eccCCHHHHHHHHHhCCEEEECCccc
Confidence 344455565565544 457888888653 3345566666662 11 23 34444432 223556677776654
Q ss_pred ---------CCCchhHHHhhhcCCCEEEE
Q 018448 132 ---------RTDHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 132 ---------~~D~qaI~EAs~lnIPtIAL 151 (355)
..-...+.||...|+|+|+-
T Consensus 243 ~~~~~~~~~E~~~~~~~EAma~G~PvI~s 271 (342)
T 2iuy_A 243 TGPWGGIWCEPGATVVSEAAVSGTPVVGT 271 (342)
T ss_dssp CCTTCSCCCCCCCHHHHHHHHTTCCEEEC
T ss_pred ccccccccccCccHHHHHHHhcCCCEEEc
Confidence 12246789999999999984
No 107
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.09 E-value=71 Score=27.79 Aligned_cols=42 Identities=5% Similarity=-0.064 Sum_probs=23.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+.+|.||+.....+...++++...+||+|.+ |++.+-. +++.
T Consensus 64 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~-~~~V 105 (290)
T 3clk_A 64 RPVMGILLLSIALTDDNLQLLQSSDVPYCFL-SMGFDDD-RPFI 105 (290)
T ss_dssp SCCSEEEEESCC----CHHHHHCC--CEEEE-SCC--CC-SCEE
T ss_pred cCCCEEEEecccCCHHHHHHHHhCCCCEEEE-cCCCCCC-CCEE
Confidence 5688888887654456678888889999876 5544332 4443
No 108
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=26.01 E-value=1.1e+02 Score=30.59 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC--chhHHHHHHHHHHcCCccccCCcc-CCcc---------------cCcccccccC
Q 018448 61 KLQMAARVIVAIENPGDIIVQSAR--PYGQRAVLKFAKYTHAHAIAGRHT-PGTF---------------TNQMQTSFNE 122 (355)
Q Consensus 61 kL~lAa~~I~aIen~g~ILfVsTr--~~~qraVlKfA~~tGa~~IagRwt-pGtL---------------TNqiq~~Fre 122 (355)
.+..++..|.. +.-++++|.. ....+.+.+||+++|...++.-+. .|.+ ++.......+
T Consensus 213 ~i~~~~~~L~~---~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~ 289 (578)
T 3lq1_A 213 SIQKMVTECTG---KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLT 289 (578)
T ss_dssp HHHHHHHHTTT---SCEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTC
T ss_pred HHHHHHHHhcc---CCeEEEECCCCChHHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCC
Confidence 35555555444 3345666653 234678999999999977653221 1211 1111112468
Q ss_pred CceEEEeCCCCCchhHHHhhh--cCCCEEEEecCCCC----CCCceEEecCC
Q 018448 123 PRLLILTDPRTDHQPIKEAAL--GNIPTIAFCDTDSP----MRYVDIGIPAN 168 (355)
Q Consensus 123 P~LLVVtDP~~D~qaI~EAs~--lnIPtIALcDTDs~----p~~VDypIP~N 168 (355)
+|+||.++.+.....+..-.. -+..+| -+|.|.. ...+|++|-++
T Consensus 290 aDlvl~~G~~~~~~~~~~~~~~~~~~~~i-~id~d~~~~~~~~~~~~~i~~d 340 (578)
T 3lq1_A 290 PEVVIRFGSMPVSKPLKNWLEQLSDIRFY-VVDPGAAWKDPIKAVTDMIHCD 340 (578)
T ss_dssp CSEEEEESSCCSCHHHHHHHHHCCSSEEE-EECTTCCCCCTTCCCSEEECSC
T ss_pred CCEEEEeCCcccchhHHHHHhcCCCCEEE-EECCCCCcCCCCcCceEEEEeC
Confidence 999999997643333322211 233333 4465531 12366777663
No 109
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.35 E-value=97 Score=27.33 Aligned_cols=44 Identities=23% Similarity=0.164 Sum_probs=27.7
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCCCC-CCceEEe
Q 018448 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDSPM-RYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D~--qaI~EAs~lnIPtIALcDTDs~p-~~VDypI 165 (355)
+.+|.||+.....+. ..++++...+||+|.+ |++.+. ..+++.-
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 102 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIG 102 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEEC
Confidence 457888776543332 5688888899999976 554332 2455544
No 110
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=25.11 E-value=4.4e+02 Score=24.93 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=71.4
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCC---ccccCCccCCcccCcccccccCCceEEEeCCCCCc-----hhHHHh
Q 018448 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHA---HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDH-----QPIKEA 141 (355)
Q Consensus 73 en~g~ILfVsTr~~---~qraVlKfA~~tGa---~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~-----qaI~EA 141 (355)
.+..+++|+|+... +.+.-+|+-+-+.. .|-++-|..|.+.=-. . .. .+|++.+.... ..++|.
T Consensus 225 ~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid-~--~~--pvi~~~~~d~~~~k~~~~~~e~ 299 (372)
T 3tbf_A 225 SDKEHTIFLGRGLYYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVD-K--NM--PIVAVVPNDELLDKTLSNLQEV 299 (372)
T ss_dssp TTCCEEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGTTTTTTTTCC-T--TC--EEEEEECSSTTHHHHHHHHHHH
T ss_pred hccCCEEEEecCcCHHHHHHHHHHHHHHhCcCcceeeHHHhcCccHhhcC-C--CC--eEEEEecCCchHHHHHHHHHHH
Confidence 45678999999753 45566677776654 3456777777643211 1 12 24444443221 357888
Q ss_pred hhcCCCEEEEecCCC-CC----CCceEEecCCCCCcchHH--HHHHHHHHHHHHhhcCC
Q 018448 142 ALGNIPTIAFCDTDS-PM----RYVDIGIPANNKGKHSIG--CLFWLLARMVLQMRGTI 193 (355)
Q Consensus 142 s~lnIPtIALcDTDs-~p----~~VDypIP~NndS~~SI~--Li~~lLareVL~~rGti 193 (355)
...|-.+|+++|.+. .. ....+.||..++-...+- ..+++|+-.+-..||..
T Consensus 300 ~~rg~~vi~i~~~~~~~~~~~~~~~~i~~p~~~~~l~pl~~~i~~Qlla~~~A~~rG~d 358 (372)
T 3tbf_A 300 HARGGKLILFVDKAVKERVNFDNSIVLELDAGHDFSAPVVFTIPLQLLSYHVAIIKGTD 358 (372)
T ss_dssp HHTTCEEEEEEEGGGGGGCCCTTCEEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCeEEEEECCCcccccccccceEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCcC
Confidence 888999999998654 22 223466785544434333 34788999999999874
No 111
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.65 E-value=72 Score=27.60 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=30.7
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCC-CceEEecC
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGIPA 167 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIALcDTDs~p~-~VDypIP~ 167 (355)
+.+|.||+.....+ ...++++...+||+|.+ |++.+-. .+++.-+-
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~D 116 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFGQN 116 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEECC
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCeEEEE-eCCCCCCCceEEEecC
Confidence 57888988876533 45688888899999876 5544332 35555443
No 112
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=24.26 E-value=67 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=25.2
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 018448 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (355)
Q Consensus 120 FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDT 154 (355)
--.|||||..+. .+...+..-++.||||+.+-..
T Consensus 82 ~l~PDlIi~~~~-~~~~~~~~L~~~Gipvv~~~~~ 115 (326)
T 3psh_A 82 ALKPDVVFVTNY-APSEMIKQISDVNIPVVAISLR 115 (326)
T ss_dssp HTCCSEEEEETT-CCHHHHHHHHTTTCCEEEECSC
T ss_pred ccCCCEEEEeCC-CChHHHHHHHHcCCCEEEEecc
Confidence 368999998764 3445677778889999988443
No 113
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=24.02 E-value=1.3e+02 Score=29.81 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=36.0
Q ss_pred ccCCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCC--CCceEEecCCCCCcchHHHH
Q 018448 120 FNEPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIGCL 178 (355)
Q Consensus 120 FreP~LLVVtD-P~~D~qaI~EAs~lnIPtIALcDTDs~p--~~VDypIP~NndS~~SI~Li 178 (355)
+..+|+||+.. -..++-.+.+|...|||++.=.+--..+ ..--++|=|- +|+.+..-|
T Consensus 79 ~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGT-nGKTTTt~m 139 (494)
T 4hv4_A 79 VLDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGT-HGKTTTTAM 139 (494)
T ss_dssp GTTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECS-SSHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecC-CChHHHHHH
Confidence 44678887764 3457788899999999999744321100 1124788775 455555443
No 114
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=23.91 E-value=1.8e+02 Score=26.53 Aligned_cols=92 Identities=10% Similarity=0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCch----hHHHHHHHHHHcCCc-cccCCccCCcccC----cccccccCCceEE
Q 018448 57 KTWEKLQMAARVIVAIENPGDIIVQSARPY----GQRAVLKFAKYTHAH-AIAGRHTPGTFTN----QMQTSFNEPRLLI 127 (355)
Q Consensus 57 kTwekL~lAa~~I~aIen~g~ILfVsTr~~----~qraVlKfA~~tGa~-~IagRwtpGtLTN----qiq~~FreP~LLV 127 (355)
|-.+.|..|+..+..-...-+++++|..+. ....+++.++..|.. .| +|+ |.+.+ ....-+..-|++|
T Consensus 244 Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V--~~~-G~~~~~~~~~~~~~~~~ad~~v 320 (416)
T 2x6q_A 244 KGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDV--KVL-TNLIGVHAREVNAFQRASDVIL 320 (416)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTE--EEE-EGGGTCCHHHHHHHHHHCSEEE
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcE--EEe-cccCCCCHHHHHHHHHhCCEEE
Confidence 334555556555543222457777887642 244556666666542 11 232 32222 1122245557776
Q ss_pred EeCCCC-CchhHHHhhhcCCCEEEE
Q 018448 128 LTDPRT-DHQPIKEAALGNIPTIAF 151 (355)
Q Consensus 128 VtDP~~-D~qaI~EAs~lnIPtIAL 151 (355)
.....+ -...+.||...|+|+|+-
T Consensus 321 ~ps~~E~~~~~~lEAma~G~PvI~~ 345 (416)
T 2x6q_A 321 QMSIREGFGLTVTEAMWKGKPVIGR 345 (416)
T ss_dssp ECCSSCSSCHHHHHHHHTTCCEEEE
T ss_pred ECCCcCCCccHHHHHHHcCCCEEEc
Confidence 654322 245789999999999984
No 115
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=23.90 E-value=77 Score=27.55 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=27.4
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+.+|.||+.....+...+.++. .+||+|.+ |++.+...+++.-
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~l~-~~iPvV~~-~~~~~~~~~~~V~ 105 (285)
T 3c3k_A 63 KMVDGVITMDALSELPELQNII-GAFPWVQC-AEYDPLSTVSSVS 105 (285)
T ss_dssp TCCSEEEECCCGGGHHHHHHHH-TTSSEEEE-SSCCTTSSSCEEE
T ss_pred CCCCEEEEeCCCCChHHHHHHh-cCCCEEEE-ccccCCCCCCEEE
Confidence 5678888876544445677777 89999987 5543323344443
No 116
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=23.86 E-value=1.3e+02 Score=26.49 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=39.2
Q ss_pred CchhHHHHHHHHHHcCCccccCC-ccCCcccCcccccccCCceEEEeC-CCC---------------CchhHHHhhhcCC
Q 018448 84 RPYGQRAVLKFAKYTHAHAIAGR-HTPGTFTNQMQTSFNEPRLLILTD-PRT---------------DHQPIKEAALGNI 146 (355)
Q Consensus 84 r~~~qraVlKfA~~tGa~~IagR-wtpGtLTNqiq~~FreP~LLVVtD-P~~---------------D~qaI~EAs~lnI 146 (355)
....-..+.+.++..|.....-+ +.+..+. .....+|.|||+. |.. ....|+++...++
T Consensus 10 ~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p----~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 85 (236)
T 3l7n_A 10 TFEAPGAYLAWAALRGHDVSMTKVYRYEKLP----KDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEK 85 (236)
T ss_dssp TTSCCHHHHHHHHHTTCEEEEEEGGGTCCCC----SCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHCCCeEEEEeeeCCCCCC----CCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCC
Confidence 33344566777777776542212 2222221 1245689999996 221 1356778888899
Q ss_pred CEEEEe
Q 018448 147 PTIAFC 152 (355)
Q Consensus 147 PtIALc 152 (355)
|+++||
T Consensus 86 PvLGIC 91 (236)
T 3l7n_A 86 IIVGVC 91 (236)
T ss_dssp EEEEET
T ss_pred CEEEEc
Confidence 999997
No 117
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.13 E-value=90 Score=27.89 Aligned_cols=107 Identities=8% Similarity=0.059 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHH--------Hhh--CCCcEEEEcc---CchhH---HHHHHHHHHcCCccccCCccCCcccCcc---
Q 018448 56 GKTWEKLQMAARVIV--------AIE--NPGDIIVQSA---RPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQM--- 116 (355)
Q Consensus 56 ~kTwekL~lAa~~I~--------aIe--n~g~ILfVsT---r~~~q---raVlKfA~~tGa~~IagRwtpGtLTNqi--- 116 (355)
.+|-++.+.|++-+- .+. +...|-++.. .++.. +.+.+.|+..|-..+-. ...+....+.
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~ 109 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS-NSDQNQDKELHLL 109 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE-ECCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE-eCCCChHHHHHHH
Confidence 477888888776552 222 2234555432 33433 44556666667543321 1111111110
Q ss_pred -cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 117 -QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 117 -q~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
...-+.+|.||+.....+...+.++...+||+|.+ |++.+-..+++.
T Consensus 110 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 157 (332)
T 2hsg_A 110 NNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLA-ASIESTNQIPSV 157 (332)
T ss_dssp HHTSCCSSCCEEECCSSCCHHHHHHHTTSSSCEEEE-SCCCSCTTSCEE
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEE
Confidence 01125789999887665557788888889999876 554432234443
No 118
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.95 E-value=1e+02 Score=27.54 Aligned_cols=43 Identities=7% Similarity=-0.003 Sum_probs=29.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCCceEE
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~p~~VDyp 164 (355)
+..|.||+.....+...+.++...+||+|.+ |++.+-..+++.
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 160 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTSLKNSRTPVVLV-GTIDGDKEIPSV 160 (332)
T ss_dssp TTCSEEEECSSCCCHHHHHHHHHHCCCEEEE-SCCCTTSCSCEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEE
Confidence 5789998887655556788887889999876 554332234443
No 119
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.73 E-value=1e+02 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=22.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCC
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcDTDs~ 157 (355)
+.+|.||+.....+...++++...|||+|.+ |++.+
T Consensus 54 ~~vdgiI~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~ 89 (276)
T 2h0a_A 54 YLTDGLILASYDLTERFEEGRLPTERPVVLV-DAQNP 89 (276)
T ss_dssp CCCSEEEEESCCCC------CCSCSSCEEEE-SSCCT
T ss_pred CCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-eccCC
Confidence 5688898887655546677887889999987 54443
No 120
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.22 E-value=1.2e+02 Score=26.12 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.7
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCC
Q 018448 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 121 reP~LLVVtDP~~D~--qaI~EAs~lnIPtIALcDTD 155 (355)
+.+|.||+.....+. ..++++...+||+|.+ |++
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~ 92 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCV-DRG 92 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEE-SSC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEE-ecC
Confidence 457888876544332 5678888889999976 443
No 121
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=22.13 E-value=1.4e+02 Score=22.66 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=37.3
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccc----c--ccCCceEEEeC--CCCC-chhHHHhh--hc
Q 018448 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----S--FNEPRLLILTD--PRTD-HQPIKEAA--LG 144 (355)
Q Consensus 76 g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~----~--FreP~LLVVtD--P~~D-~qaI~EAs--~l 144 (355)
.+|++|...+...+.+.+..+..|.... ..+|.... . -..||+||+-- |..+ ...+++.+ .-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~-------~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVL-------TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEE-------EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence 4677787777766666666665553211 11221111 1 24688766532 2222 22333333 23
Q ss_pred CCCEEEEecCC
Q 018448 145 NIPTIAFCDTD 155 (355)
Q Consensus 145 nIPtIALcDTD 155 (355)
++|+|.+.+.+
T Consensus 77 ~~~ii~ls~~~ 87 (143)
T 3jte_A 77 HMAVIILTGHG 87 (143)
T ss_dssp TCEEEEEECTT
T ss_pred CCeEEEEECCC
Confidence 68888886543
No 122
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.10 E-value=88 Score=27.24 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=27.6
Q ss_pred cCCceEEEeCCCCC-chhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~~D-~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+.+|.||+.....+ ...+.++...+||+|.+ |++.+-..+++..
T Consensus 75 ~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 119 (293)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVAL-DRALDREHFTSVV 119 (293)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEE-ESCCCTTTCEEEE
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEE-CCccCcCCCCEEE
Confidence 56788888765433 23567777889999877 5443323345544
No 123
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=22.08 E-value=2.1e+02 Score=30.18 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=39.5
Q ss_pred HHHHHHHHH-HhhCCCcEEEEccCch----hHHHHHHHHHHcCC---ccccCCccCCc--ccCcccccccCCceEEEeCC
Q 018448 62 LQMAARVIV-AIENPGDIIVQSARPY----GQRAVLKFAKYTHA---HAIAGRHTPGT--FTNQMQTSFNEPRLLILTDP 131 (355)
Q Consensus 62 L~lAa~~I~-aIen~g~ILfVsTr~~----~qraVlKfA~~tGa---~~IagRwtpGt--LTNqiq~~FreP~LLVVtDP 131 (355)
+.+|+..|. +|++..+|++++-... ..-++.++.+..|. +++.+|+..|- ....+......+++||++|.
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I~~~~~~~~LIItVD~ 137 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDC 137 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC--------------------CCEEEESCC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHHHhhccCCCEEEEEcC
Confidence 344444444 4688899999988731 22344456667775 34445544321 11111111246789999997
Q ss_pred C-CCchhHHHhhhcCCCEEEEecCC
Q 018448 132 R-TDHQPIKEAALGNIPTIAFCDTD 155 (355)
Q Consensus 132 ~-~D~qaI~EAs~lnIPtIALcDTD 155 (355)
. .++..+.++...++.+| ++|--
T Consensus 138 G~~s~~~i~~a~~~g~~VI-ViDHH 161 (666)
T 2zxr_A 138 GITNHAELRELLENGVEVI-VTDHH 161 (666)
T ss_dssp C--------------CEEE-EECCC
T ss_pred CchhhhhHHHHHhCCCCEE-EECCc
Confidence 6 34445666766787655 55643
No 124
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=21.89 E-value=1.4e+02 Score=26.02 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=40.0
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCC-C---CC----chhHHHhhhcCCCE
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDP-R---TD----HQPIKEAALGNIPT 148 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP-~---~D----~qaI~EAs~lnIPt 148 (355)
+|+++.........+.+..++.|..++.-++.. . ...+..+|.||++.- . .+ ....+++...++|+
T Consensus 15 ~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~----~--~~~l~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~Pi 88 (212)
T 2a9v_A 15 KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI----D--SSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPI 88 (212)
T ss_dssp BEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS----C--GGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCE
T ss_pred eEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC----C--HHHHhCCCEEEECCCCCCCCcccccchhHHHHHHhCCCCE
Confidence 577776655444455666666776654322211 1 112344788888864 1 11 12345566678999
Q ss_pred EEEe
Q 018448 149 IAFC 152 (355)
Q Consensus 149 IALc 152 (355)
.++|
T Consensus 89 LGIC 92 (212)
T 2a9v_A 89 LGIC 92 (212)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9997
No 125
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=21.77 E-value=93 Score=27.76 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhH
Q 018448 55 LGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ 88 (355)
Q Consensus 55 L~kTwekL~lAa~~I~aIen~g~ILfVsTr~~~q 88 (355)
+..+..+|...+........|..+.|.|......
T Consensus 38 ~~sl~~Ql~~~y~~nRr~~~p~~l~~t~~~~~~~ 71 (197)
T 4fmw_A 38 IKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLK 71 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCEEEEESCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEeCCChHHH
Confidence 5677888888888887778899998888764433
No 126
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=21.71 E-value=1.2e+02 Score=25.62 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=25.7
Q ss_pred CceEEEeCC--CCCchhHHHhhhcCCCEEEEecCCCC
Q 018448 123 PRLLILTDP--RTDHQPIKEAALGNIPTIAFCDTDSP 157 (355)
Q Consensus 123 P~LLVVtDP--~~D~qaI~EAs~lnIPtIALcDTDs~ 157 (355)
+|.||+... ......++++...+||+|.+ |++.+
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 95 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVV-DSDLA 95 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEE-ecCCC
Confidence 888888763 45567889999999999987 44443
No 127
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=21.66 E-value=1.1e+02 Score=26.74 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=30.1
Q ss_pred cCCceEEEeCCCC--CchhHHHhhhcCCCEEEEecCCCCCC-CceEEec
Q 018448 121 NEPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDSPMR-YVDIGIP 166 (355)
Q Consensus 121 reP~LLVVtDP~~--D~qaI~EAs~lnIPtIALcDTDs~p~-~VDypIP 166 (355)
+.+|.||+..... ....++++...|||+|.+ |++.+.. .+++.-+
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~ 107 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLGT 107 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEEC
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCceeEEECc
Confidence 5688888875433 356889999999999876 5544432 3555543
No 128
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=21.01 E-value=1.1e+02 Score=23.87 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEE
Q 018448 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIA 150 (355)
Q Consensus 75 ~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtDP~~D~qaI~EAs~lnIPtIA 150 (355)
+..|+|.++-...+.-+.+.++..|+.. ++..+. .-++||+-+... .=++.|..+|||+|.
T Consensus 10 G~~~v~TG~l~~~R~e~~~~i~~~Gg~v----------~~sVsk---kt~~LV~g~~~g--sK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 10 GLTFVITGELSRPREEVKALLRRLGAKV----------TDSVSR---KTSYLVVGENPG--SKLEKARALGVPTLT 70 (92)
T ss_dssp TCEEECSTTTTSCHHHHHHHHHHTTCEE----------ESCCSS---SCCCBEECSSSS--TTHHHHHCSSSCCEE
T ss_pred CcEEEEecCCCCCHHHHHHHHHHcCCEE----------eCcccC---CeeEEEeCCCCC--hHHHHHHHcCCcEEe
Confidence 3456666665445556667777766652 322222 235666665432 457889999999974
No 129
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.95 E-value=2.6e+02 Score=24.98 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=27.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEec
Q 018448 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCD 153 (355)
Q Consensus 121 reP~LLVVtDP~~D~qaI~EAs~lnIPtIALcD 153 (355)
+.+|-||+.....+...+.++...+||+|.+-+
T Consensus 117 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 117 HRPDGVLITGLSHAEPFERILSQHALPVVYMMD 149 (339)
T ss_dssp TCCSEEEEECSCCCTTHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcCCCCEEEEee
Confidence 678999998876666778888889999998844
No 130
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.89 E-value=2.3e+02 Score=20.94 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=40.3
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccc----cccCCceEEEeC---CCCC-chhHHHhh--h
Q 018448 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTD---PRTD-HQPIKEAA--L 143 (355)
Q Consensus 74 n~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~----~FreP~LLVVtD---P~~D-~qaI~EAs--~ 143 (355)
++.+|++|...+.....+.+.-+..|...+. .+|.... .-..||++|+ | |..+ ...+++.+ .
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~-------~~~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVL-------AADGVDALELLGGFTPDLMIC-DIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEE-------ESCHHHHHHHHTTCCCSEEEE-CCC-----CHHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEE-------eCCHHHHHHHHhcCCCCEEEE-ecCCCCCCHHHHHHHHHhcC
Confidence 3457888888887777777777766643211 1222111 1246887654 5 2222 23333333 2
Q ss_pred cCCCEEEEecCCC
Q 018448 144 GNIPTIAFCDTDS 156 (355)
Q Consensus 144 lnIPtIALcDTDs 156 (355)
-++|+|.+.+.+.
T Consensus 78 ~~~~ii~~t~~~~ 90 (130)
T 3eod_A 78 DQTPVLVISATEN 90 (130)
T ss_dssp CCCCEEEEECCCC
T ss_pred CCCCEEEEEcCCC
Confidence 3689998876543
No 131
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.86 E-value=1.3e+02 Score=25.89 Aligned_cols=44 Identities=9% Similarity=-0.049 Sum_probs=28.9
Q ss_pred cCCceEEEeCCC-----CCchhHHHhhhcCCCEEEEecCCCCCCCceEEe
Q 018448 121 NEPRLLILTDPR-----TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (355)
Q Consensus 121 reP~LLVVtDP~-----~D~qaI~EAs~lnIPtIALcDTDs~p~~VDypI 165 (355)
+.+|.||+.... .+...++++...+||+|.+ |++.+...+++.-
T Consensus 70 ~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 118 (298)
T 3tb6_A 70 QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMI-NASYAELAAPSFT 118 (298)
T ss_dssp TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEE-SSCCTTCSSCEEE
T ss_pred CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEE-ecCcCCCCCCEEE
Confidence 567888886543 3446788899999999976 5544333444443
No 132
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=20.85 E-value=5.2e+02 Score=24.18 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=71.3
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCCc---cccCCccCCcccCcccccccCCc-eEEEeCCCCC---chhHHHhh
Q 018448 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD---HQPIKEAA 142 (355)
Q Consensus 73 en~g~ILfVsTr~~---~qraVlKfA~~tGa~---~IagRwtpGtLTNqiq~~FreP~-LLVVtDP~~D---~qaI~EAs 142 (355)
.+..+++|+|+... +.+.-+|+-+-+..+ |-+|-|..|.+. .-.++ .+|++.+..+ ...+.|..
T Consensus 206 ~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~~~ 279 (352)
T 3g68_A 206 VNSKEIRIIGHSDIYGDTLEAALKLLETMRIPVTGYEFEEFIHGIYN------AINSDSTIFILDTGKEPRVTKMIDVLS 279 (352)
T ss_dssp HTCCEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHTTGGG------GCCTTEEEEEEECSCCTTHHHHHHHHH
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHHHhcccccccchhhccccchh------eeCCCceEEEEECCchHHHHHHHHHHH
Confidence 46788999998753 456667777765443 334556666532 12222 2444444322 34677888
Q ss_pred hcCCCEEEEecCCCCCCCceEEecCCCCC-cch--HHHHHHHHHHHHHHhhcCC
Q 018448 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKG-KHS--IGCLFWLLARMVLQMRGTI 193 (355)
Q Consensus 143 ~lnIPtIALcDTDs~p~~VDypIP~NndS-~~S--I~Li~~lLareVL~~rGti 193 (355)
..+-.+++|.+.+.. ...++.||.-.+. ... .-..+++|+..+-..||..
T Consensus 280 ~~g~~v~~i~~~~~~-~~~~~~~p~~~~~~~~pl~~~v~~Qlla~~~A~~~G~d 332 (352)
T 3g68_A 280 GWTENVFAIGRDVTE-NDKNLKIDITDNPYYQTFNFIVPIQLICGEIPTLRGVD 332 (352)
T ss_dssp TTCSCEEEEESSCCC-STTCEECCCCSCTTGGGGTTTHHHHHHHHHSGGGGTCC
T ss_pred HcCCeEEEEecCCCC-CceeEEeCCCCchhHhHHHHHHHHHHHHHHHHHHhCcC
Confidence 889999999876542 4567888864332 222 2345789999988888875
No 133
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.56 E-value=56 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=24.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEE
Q 018448 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAF 151 (355)
Q Consensus 121 reP~LLVVtDP~~D--~qaI~EAs~lnIPtIAL 151 (355)
+.+|.||+.....+ ...++++. .+||+|.+
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEEC
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEe
Confidence 56888888866655 67799999 99999987
No 134
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.53 E-value=2.3e+02 Score=19.92 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=38.9
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccc----cccCCceEEEeC--CCCC-chhHHHhhh----c
Q 018448 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTD--PRTD-HQPIKEAAL----G 144 (355)
Q Consensus 76 g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~----~FreP~LLVVtD--P~~D-~qaI~EAs~----l 144 (355)
.+|+++...+...+.+.+..+..|..... .+|.... .-..|+++|+-- +..+ ...++.... -
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~-------~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIW-------LVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADP 74 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEE-------ESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEE-------ecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccC
Confidence 46888888877776666666655542111 1121111 124688776532 2222 122333322 5
Q ss_pred CCCEEEEecCCC
Q 018448 145 NIPTIAFCDTDS 156 (355)
Q Consensus 145 nIPtIALcDTDs 156 (355)
++|+|.+.+...
T Consensus 75 ~~~ii~~~~~~~ 86 (119)
T 2j48_A 75 HPPLVLFLGEPP 86 (119)
T ss_dssp SCCCEEEESSCC
T ss_pred CCCEEEEeCCCC
Confidence 789999877643
No 135
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.49 E-value=1.4e+02 Score=25.89 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=23.3
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCC
Q 018448 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDS 156 (355)
Q Consensus 121 reP~LLVVtDP~~D~--qaI~EAs~lnIPtIALcDTDs 156 (355)
+.+|.||+.....+. ..++++...+||+|.+ |++.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 92 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITI-DRSA 92 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCC
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEe-cCCC
Confidence 456777776443332 4678888889999876 5543
No 136
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=20.40 E-value=1.1e+02 Score=29.83 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=38.9
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccccccCCceEEEeC----CCCC---chhHHHhhhcCCCEE
Q 018448 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTD---HQPIKEAALGNIPTI 149 (355)
Q Consensus 77 ~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~~FreP~LLVVtD----P~~D---~qaI~EAs~lnIPtI 149 (355)
+|+++...- +..+.+...+.|+..+.-++. ++.....-..||.||+.+ |..+ ...|+++...++|+.
T Consensus 192 ~V~viD~G~--k~ni~r~L~~~G~~v~vvp~~----~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 192 HVVAYDFGA--KRNILRMLVDRGCRLTIVPAQ----TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEESSC--CHHHHHHHHHTTEEEEEEETT----CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEE
T ss_pred EEEEEECCC--hHHHHHHHHHCCCEEEEEecc----CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEE
Confidence 466665532 233445555556654332332 111111113689998853 4433 346788877799999
Q ss_pred EEe
Q 018448 150 AFC 152 (355)
Q Consensus 150 ALc 152 (355)
+||
T Consensus 266 GIC 268 (379)
T 1a9x_B 266 GIC 268 (379)
T ss_dssp EET
T ss_pred EEC
Confidence 997
No 137
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=20.36 E-value=1.1e+02 Score=27.76 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCccccCCccCCcccCcccc----cc--cCCceEEEeCCCC
Q 018448 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SF--NEPRLLILTDPRT 133 (355)
Q Consensus 60 ekL~lAa~~I~aIen~g~ILfVsTr~~~qraVlKfA~~tGa~~IagRwtpGtLTNqiq~----~F--reP~LLVVtDP~~ 133 (355)
+++.....++.....+.-++|++++.........+.+. |... ..+.|.++..... .| .+.++||.||.-.
T Consensus 252 ~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~---~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 252 EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE-GHQV---ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT-TCCC---EEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC-CCeE---EEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 44444445555554555666777777776665555443 3211 1233333332221 24 3567888777432
Q ss_pred CchhHHHhhhcCCCEEEEecCCCCCCCceEEecCCCCCcchHHHHHHHHHH
Q 018448 134 DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 184 (355)
Q Consensus 134 D~qaI~EAs~lnIPtIALcDTDs~p~~VDypIP~NndS~~SI~Li~~lLar 184 (355)
.-++||-+-++ |+|-.|.|.++..|+..+.....|
T Consensus 328 --------~Gidip~~~~V--------i~~~~p~~~~~~~s~~~~~Qr~GR 362 (412)
T 3fht_A 328 --------RGIDVEQVSVV--------INFDLPVDKDGNPDNETYLHRIGR 362 (412)
T ss_dssp --------SSCCCTTEEEE--------EESSCCBCSSSSBCHHHHHHHHTT
T ss_pred --------cCCCccCCCEE--------EEECCCCCCCCCcchheeecccCc
Confidence 33566655443 455567676666677666554443
Done!