BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018449
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 31/321 (9%)
Query: 34 SHALLSVTKSLXXXXXXXXXXXXXXXPLERLKILLQVQNPHSI-----KYNGTIQGLKYI 88
S LS K P+ER+K+LLQVQ+ +Y G I + I
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 89 WKSEGFRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLG 148
K +GF ++GN N R P A+ F ++++ K I R+++ L
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNF-AFKDKYKQIF--LGGVDRHKQFWRYFAGNLA 117
Query: 149 AGACAGIIAMSATYPMDMVRGRLTVQTEK--SPRQYRGIFHALTTVLREEGPRSLYKGWL 206
+G AG ++ YP+D R RL K + R++ G+ + +T + + +G R LY+G+
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 207 PSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXXXXXXXXXXXXXY 266
SV G+I Y F VY++ K G++ D + + Y
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAK---------GMLPDPKNVHIIVSWMIAQTVTAVAGLVSY 228
Query: 267 PLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVPNS 326
P D +RRRM M G+ A + Y G VD +RK + EG A +KG N
Sbjct: 229 PFDTVRRRMMMQ-----------SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277
Query: 327 VKVVPSIAIAFVTYEMVKDIL 347
++ + A V Y+ +K +
Sbjct: 278 LRGMGG-AFVLVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 28/208 (13%)
Query: 147 LGAGACAGIIAMSATYPMDMVRGRLTVQTEK-------SPRQYRGIFHALTTVLREEGPR 199
LGAG A IA T+P+D + RL +Q E + QYRG+ + T++R EGPR
Sbjct: 6 LGAGT-AACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 200 SLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXXXXXXX 259
SLY G + + + + + +Y+S+K + K + G+ +RL
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG--------SEHAGIGSRLLAGSTTGA 116
Query: 260 XXXXXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALY 319
P DV++ R Q A G G+ Y V+A++ R EG L+
Sbjct: 117 LAVAVAQPTDVVKVRFQ-------AQARAGGGR-----RYQSTVEAYKTIAREEGIRGLW 164
Query: 320 KGLVPNSVKVVPSIAIAFVTYEMVKDIL 347
KG PN + VTY+++KD L
Sbjct: 165 KGTSPNVARNAIVNCAELVTYDLIKDTL 192
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 60 PLERLKILLQVQNPHS--IKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVKFF 117
P + +K+ Q Q +Y T++ K I + EG RGL+KG N AR + +
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 118 SYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK 177
+Y+ K L T + T GAG C +IA P+D+V+ R
Sbjct: 184 TYDLI-KDTLLKANLMTDDLPCHFTSAF--GAGFCTTVIAS----PVDVVKTRYM---NS 233
Query: 178 SPRQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKS 233
+ QY H T+LR+EGPR+ YKG++PS + + + + F YE LK L+ +
Sbjct: 234 ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 40/297 (13%)
Query: 60 PLERLKILLQVQ--------NPHSIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPN 111
PL+ K+ LQ+Q S +Y G + + + ++EG R L+ G R +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 112 SAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRL 171
++V+ Y+ + Y + + E A + RL AG+ G +A++ P D+V+ R
Sbjct: 81 ASVRIGLYDSVKQ----FYTKGS--EHAGIGS--RLLAGSTTGALAVAVAQPTDVVKVRF 132
Query: 172 TVQTEKSP-RQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWL 230
Q R+Y+ A T+ REEG R L+KG P+V Y+ +KD L
Sbjct: 133 QAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Query: 231 IKSKALGLVDDNNELGVATRLXXXXXXXXXXXXXXYPLDVIRRRMQMAGWKDAASVVTGD 290
+K+ + DD + P+DV++ R
Sbjct: 193 LKANLM--TDD-----LPCHFTSAFGAGFCTTVIASPVDVVKTRYM-------------- 231
Query: 291 GKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 347
A +Y+ +R EG A YKG +P+ +++ + FVTYE +K L
Sbjct: 232 --NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 94 FRGLFKGNGTNCARIIPNSAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACA 153
F+ + + +G N ++P YE K ++WL RR+T EA P + C
Sbjct: 407 FKVISRTSGNNARTVMP--------YESGLKDVVWLGRRETVVVEAHYAPFPGVYMFHCH 458
Query: 154 GII 156
+I
Sbjct: 459 NLI 461
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,191,809
Number of Sequences: 62578
Number of extensions: 350300
Number of successful extensions: 750
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 7
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)