Query 018449
Match_columns 355
No_of_seqs 161 out of 1970
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.2E-54 7.4E-59 390.9 23.6 288 36-347 3-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6.5E-55 2.2E-59 395.1 19.5 280 42-352 3-291 (303)
3 1okc_A ADP, ATP carrier protei 100.0 5.9E-34 2E-38 257.0 18.0 196 141-350 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 4.3E-34 1.5E-38 258.5 12.5 185 38-232 102-288 (303)
5 3vjj_A P9-1; 3.00A {Rice black 22.6 40 0.0014 28.6 2.0 35 260-315 274-308 (368)
6 1y9i_A Low temperature require 14.8 2.7E+02 0.0093 21.9 5.1 46 214-261 111-156 (178)
7 3tgu_G UQCRQ, mitochondrial ub 11.7 1.8E+02 0.0061 19.6 2.8 35 199-233 35-69 (81)
8 2acm_A Mucin-1; auto-catalytic 11.4 52 0.0018 20.7 0.0 20 183-202 40-59 (66)
9 2khf_A PLNJ; anti-microbial, b 11.3 68 0.0023 15.7 0.4 21 183-211 4-24 (26)
10 1ldd_A APC2WHB, anaphase promo 10.7 3.3E+02 0.011 17.9 3.8 33 48-80 12-44 (74)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.2e-54 Score=390.85 Aligned_cols=288 Identities=33% Similarity=0.530 Sum_probs=242.9
Q ss_pred cchhhHHHHHHHhHHHHhHHhhcccHHHHHHHHHhCCCC-----CCCCCcHHHHHHHHHHhccccccccchhhhhhhhhc
Q 018449 36 ALLSVTKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPH-----SIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIP 110 (355)
Q Consensus 36 ~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~-----~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~l~~~~ 110 (355)
+.++.+..+++|++||+++.++++|+|+||+|+|++... ...|++.++++++|+++||++|||||+.+++++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 446678899999999999999999999999999997532 236889999999999999999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhHhhhcchHHHHHHHHHccCCC--CCCCCCCHHHH
Q 018449 111 NSAVKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK--SPRQYRGIFHA 188 (355)
Q Consensus 111 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~--~~~~~~~~~~~ 188 (355)
..+++|.+||.+++.++.. .+.+..........+++|++||+++.++++|+|++|+|+|++... ....|++++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~ 159 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGG---VDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC 159 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhccc---cCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHH
Confidence 9999999999996644421 111111112346788999999999999999999999999997532 23468999999
Q ss_pred HHHHHhhcCccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCccchHHHHHHHHHHHHhHhhhcccH
Q 018449 189 LTTVLREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPL 268 (355)
Q Consensus 189 ~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~ 268 (355)
+++|+++||++|||||+.+++++.+++.+++|.+||.+++.+.+. .+.+....+++|+++|++++++++|+
T Consensus 160 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---------~~~~~~~~~~~g~~ag~~a~~~t~P~ 230 (297)
T 1okc_A 160 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------KNVHIIVSWMIAQTVTAVAGLVSYPF 230 (297)
T ss_dssp HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------GCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCccHHHHHHHHHHHHHHHHHhcChH
Confidence 999999999999999999999999999999999999999865432 12356778999999999999999999
Q ss_pred HHHHHHHHhcccccccccccCCCCcccccccCCHHHHHHHHHHhhCcccccccccccccccchhhhHHHHHHHHHHHHh
Q 018449 269 DVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDIL 347 (355)
Q Consensus 269 d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~ 347 (355)
|+||+|+|++.... .....|.++++|+++|+++||++|||||+.++++|. +..+++|.+||.+++.+
T Consensus 231 dvvktr~q~~~~~~-----------~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 231 DTVRRRMMMQSGRK-----------GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHTTTTCC-----------GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcCCCC-----------CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999875321 112479999999999999999999999999999996 57899999999988753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.5e-55 Score=395.14 Aligned_cols=280 Identities=26% Similarity=0.377 Sum_probs=248.0
Q ss_pred HHHHHHhHHHHhHHhhcccHHHHHHHHHhCCCC--------CCCCCcHHHHHHHHHHhccccccccchhhhhhhhhccch
Q 018449 42 KSLVAGGVAGGVSRTAVAPLERLKILLQVQNPH--------SIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSA 113 (355)
Q Consensus 42 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~--------~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~l~~~~~~~ 113 (355)
.++++|++|++++.++++|+|+||+|+|++... ...|++.++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999997642 246899999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhHhhhcchHHHHHHHHHccCCC-CCCCCCCHHHHHHHH
Q 018449 114 VKFFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK-SPRQYRGIFHALTTV 192 (355)
Q Consensus 114 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~-~~~~~~~~~~~~~~i 192 (355)
++|.+|+.+++.+.. . ....+....+++|++||+++.++++|+|++|+|+|++... ....|+++++++++|
T Consensus 83 i~f~~ye~~k~~~~~-------~-~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTK-------G-SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSC-------C-CSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------C-CcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 999999999654421 1 1135677889999999999999999999999999998642 234689999999999
Q ss_pred HhhcCccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCccchHHHHHHHHHHHHhHhhhcccHHHHH
Q 018449 193 LREEGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIR 272 (355)
Q Consensus 193 ~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~ik 272 (355)
+++||++|||||+.+++++.++..+++|.+||.+++.+.+.. ....+....+++|+++|++++++++|+|+||
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvk 227 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVK 227 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999999875431 1234567789999999999999999999999
Q ss_pred HHHHhcccccccccccCCCCcccccccCCHHHHHHHHHHhhCcccccccccccccccchhhhHHHHHHHHHHHHhccccc
Q 018449 273 RRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEMR 352 (355)
Q Consensus 273 ~r~q~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~ 352 (355)
+|+|.+.. ..|.++++|+++|+++||++|||||+.++++|.++..+++|.+||.+++.+.+...
T Consensus 228 trlq~~~~----------------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 228 TRYMNSAL----------------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp HHHTTCCS----------------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHhccc----------------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 99998752 25899999999999999999999999999999999999999999999998876543
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.9e-34 Score=256.98 Aligned_cols=196 Identities=28% Similarity=0.406 Sum_probs=166.9
Q ss_pred cchHHHHHHHHHHHHhHhhhcchHHHHHHHHHccCCC----CCCCCCCHHHHHHHHHhhcCccccccchhhhhhhhhhhh
Q 018449 141 LTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEK----SPRQYRGIFHALTTVLREEGPRSLYKGWLPSVIGVIPYV 216 (355)
Q Consensus 141 ~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~----~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 216 (355)
.+.+..+++|++||+++.++++|+|++|+|+|++... ....|+++++++++++++||++|||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 3456789999999999999999999999999998542 123589999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCCccchHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcccccccccccCCCCcccc
Q 018449 217 GLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVGQTVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKAT 296 (355)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~ 296 (355)
+++|.+||.+++.+..... ..++...+....+++|+++|++++++++|+|+||+|+|++.... ...
T Consensus 85 ~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----------~~~ 150 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-----------AAQ 150 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----------TTT
T ss_pred HHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----------CcC
Confidence 9999999999996543211 01111124567899999999999999999999999999975321 112
Q ss_pred cccCCHHHHHHHHHHhhCcccccccccccccccchhhhHHHHHHHHHHHHhccc
Q 018449 297 LEYNGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVE 350 (355)
Q Consensus 297 ~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 350 (355)
..|.++++|+++|+++||++|||||+.++++|.++..++.|.+||.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred cCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 478999999999999999999999999999999999999999999999988543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.3e-34 Score=258.51 Aligned_cols=185 Identities=28% Similarity=0.442 Sum_probs=164.3
Q ss_pred hhhHHHHHHHhHHHHhHHhhcccHHHHHHHHHhCCC--CCCCCCcHHHHHHHHHHhccccccccchhhhhhhhhccchhh
Q 018449 38 LSVTKSLVAGGVAGGVSRTAVAPLERLKILLQVQNP--HSIKYNGTIQGLKYIWKSEGFRGLFKGNGTNCARIIPNSAVK 115 (355)
Q Consensus 38 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~--~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~l~~~~~~~~~ 115 (355)
.+....+++|++||+++.++++|+|+||+|+|++.. ....|++.++++++|+++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999864 234689999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhHhhhcchHHHHHHHHHccCCCCCCCCCCHHHHHHHHHhh
Q 018449 116 FFSYEEASKGILWLYRRQTRNEEAELTPVLRLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSPRQYRGIFHALTTVLRE 195 (355)
Q Consensus 116 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~ 195 (355)
|.+||.+++.+.. ......+....+++|++||+++.++++|+|+||+|+|++... .|.++++++++|+++
T Consensus 182 f~~ye~~k~~l~~-------~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~---~y~~~~~~~~~i~~~ 251 (303)
T 2lck_A 182 LVTYDLIKDTLLK-------ANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG---QYHSAGHCALTMLRK 251 (303)
T ss_dssp HHHHHHHHHTTTT-------TTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS---SCCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh-------ccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc---ccCCHHHHHHHHHHH
Confidence 9999999654421 112234567789999999999999999999999999987542 489999999999999
Q ss_pred cCccccccchhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 018449 196 EGPRSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIK 232 (355)
Q Consensus 196 ~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (355)
||++|||||+.++++|.++..+++|.+||.+++++.+
T Consensus 252 eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 252 EGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977643
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=22.58 E-value=40 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=25.8
Q ss_pred hHhhhcccHHHHHHHHHhcccccccccccCCCCcccccccCCHHHHHHHHHHhhCc
Q 018449 260 VGQTVAYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGF 315 (355)
Q Consensus 260 ~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~ 315 (355)
++++=-||||.+|-.++.. .++...+++.+.++|+
T Consensus 274 LaTFdnypfdllRfqL~Sl---------------------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL---------------------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC---------------------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh---------------------ccChHHHHHHHHhcCc
Confidence 4566789999998777643 3445678888888885
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=14.78 E-value=2.7e+02 Score=21.90 Aligned_cols=46 Identities=11% Similarity=0.015 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhccCCCCCCCccchHHHHHHHHHHHHhH
Q 018449 214 PYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLACGAAAGTVG 261 (355)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~ 261 (355)
....+.|..||..|.+..+..... ..+.-..+...+++|++|+++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~--~~gg~gimlDDivAgi~A~~~~ 156 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEH--DGIAVHTFLDDIVGAIAAAAAS 156 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCC--CSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcc--cCCCCcchHHHHHHHHHHHHHH
Confidence 355667888888887665542111 1112346788889998887755
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=11.71 E-value=1.8e+02 Score=19.61 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=26.2
Q ss_pred cccccchhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 018449 199 RSLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKS 233 (355)
Q Consensus 199 ~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (355)
.-.+|-+...++..+|...+.+.+|+..++.-...
T Consensus 35 ~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 35 PNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566678888999999999999998776554
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=11.44 E-value=52 Score=20.68 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHhhcCccccc
Q 018449 183 RGIFHALTTVLREEGPRSLY 202 (355)
Q Consensus 183 ~~~~~~~~~i~~~~G~~gly 202 (355)
+++.+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45778888999999998875
No 9
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=11.33 E-value=68 Score=15.74 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHhhcCccccccchhhhhhh
Q 018449 183 RGIFHALTTVLREEGPRSLYKGWLPSVIG 211 (355)
Q Consensus 183 ~~~~~~~~~i~~~~G~~glyrG~~~~~~~ 211 (355)
++++..+++ |||.|=.-+.+|
T Consensus 4 knfwsslrk--------gfydgeagrair 24 (26)
T 2khf_A 4 KNFWSSLRK--------GFYDGEAGRAIR 24 (26)
T ss_dssp HHHHHHHHH--------HHTTTHHHHTTT
T ss_pred HHHHHHHHh--------hcccchhhhHhh
Confidence 345555553 788886655544
No 10
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=10.73 E-value=3.3e+02 Score=17.93 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=23.2
Q ss_pred hHHHHhHHhhcccHHHHHHHHHhCCCCCCCCCc
Q 018449 48 GVAGGVSRTAVAPLERLKILLQVQNPHSIKYNG 80 (355)
Q Consensus 48 ~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~ 80 (355)
++-|.++.+=.-|+|+|.+.+.+-..+...|..
T Consensus 12 yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~ 44 (74)
T 1ldd_A 12 FIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNR 44 (74)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTT
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCc
Confidence 445566677889999999999876544444444
Done!