BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018450
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis
GN=brcc3 PE=2 SV=1
Length = 261
Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 9/182 (4%)
Query: 1 MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60
M++ V + D +L C+TH+LSTE EE+MGL +G+++ K ++ ++I RSD+R
Sbjct: 1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKVVHIHSVI----ILRRSDKR 56
Query: 61 KDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 120
KDRVE +PEQL+AA+ +ADR+ +TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D
Sbjct: 57 KDRVEISPEQLSAATTEADRLAEITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 116
Query: 121 TGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKSTVIDLES 175
GF+GLIFSCF ED N K GRI FQS +++ I P+ ++P N + LES
Sbjct: 117 VGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIRKVCLES 176
Query: 176 SL 177
++
Sbjct: 177 AV 178
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 274 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQ 318
+EY R E+PLHV+P +++ K+ L S +L R+L +EE+ AY +
Sbjct: 152 SEYERIEVPLHVVPHNTIRKV--CLESAVELPRILCQEEQDAYRR 194
>sp|Q66GV6|BRCC3_XENLA Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3
PE=2 SV=1
Length = 261
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 9/182 (4%)
Query: 1 MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60
M++ V + D +L C+TH+LSTE EE+MGL +G+++ K ++ ++I RSD+R
Sbjct: 1 MAVQAVHIQGDAFLVCVTHSLSTEREEVMGLCIGEVDTQKLVHIHSVI----ILRRSDKR 56
Query: 61 KDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 120
KDRVE +PEQL+AA+ +ADR+ +TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D
Sbjct: 57 KDRVEISPEQLSAATIEADRLADITGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 116
Query: 121 TGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKSTVIDLES 175
GF+GLIFSCF ED N K GRI FQS +++ I P+ ++P N + LES
Sbjct: 117 VGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIRKVCLES 176
Query: 176 SL 177
++
Sbjct: 177 AV 178
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 274 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQ 318
+EY R E+PLHV+P +++ K+ L S +L R+L +EE+ AY +
Sbjct: 152 SEYERIEVPLHVVPHNTIRKV--CLESAVELPRILCQEEQDAYRR 194
>sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2
SV=1
Length = 260
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 127/182 (69%), Gaps = 9/182 (4%)
Query: 1 MSLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR 60
M+++ V + D +L C+ HALSTE EE+MGL +G+++ ++ ++ ++I RSD+R
Sbjct: 1 MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDTNRIVHIHSVII----LRRSDKR 56
Query: 61 KDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 120
KDRVE +PEQL++A+ +A+R+ +TGR RV+GWYHSHPHITV PSHVDVRTQAMYQ++D
Sbjct: 57 KDRVEISPEQLSSAATEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD 116
Query: 121 TGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQ----NHISKPIALLPVNKSTVIDLES 175
GF+GLIFSCF ED N K GR+ FQS ++ I PI ++P + LES
Sbjct: 117 QGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVVPHEAIGKVCLES 176
Query: 176 SL 177
++
Sbjct: 177 AV 178
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 273 GAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQ 318
G+EY R EIP+HV+P ++ K+ L S +L R+L +EE+ Y +
Sbjct: 151 GSEYERIEIPIHVVPHEAIGKV--CLESAVELPRILCQEEQDTYRK 194
>sp|P46737|BRCC3_MOUSE Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus GN=Brcc3 PE=2
SV=1
Length = 291
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 119/195 (61%), Gaps = 25/195 (12%)
Query: 8 MSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQS------------ 55
+ D +L CL HALSTE EE+MGL +G++ + G ++
Sbjct: 14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDIRSDSKFTYTGTEMRTVQEKMDTIRIVH 73
Query: 56 --------RSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSH 107
RSD+RKDRVE +PEQL+AAS +A+R+ LTGR RV+GWYHSHPHITV PSH
Sbjct: 74 IHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSH 133
Query: 108 VDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIAL 162
VDVRTQAMYQ++D GF+GLIFSCF ED N K GR+ FQS +++ I PI +
Sbjct: 134 VDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERIEIPIHI 193
Query: 163 LPVNKSTVIDLESSL 177
+P + LES++
Sbjct: 194 VPHITIGKVCLESAV 208
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 273 GAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQ 318
+EY R EIP+H++P ++ K+ L S +L ++L +EE+ AY +
Sbjct: 181 SSEYERIEIPIHIVPHITIGKV--CLESAVELPKILCQEEQDAYRR 224
>sp|B2RYM5|BRCC3_RAT Lys-63-specific deubiquitinase BRCC36 OS=Rattus norvegicus GN=Brcc3
PE=2 SV=1
Length = 291
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 121/195 (62%), Gaps = 25/195 (12%)
Query: 8 MSEDVWLTCLTHALSTETEEIMGLLLGDIE-----HSKNGNVTALIWGASPQ-------- 54
+ D +L CL HALSTE EE+MGL +G++ SK + + + +
Sbjct: 14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDVRSESKFAHAGSDVCTVPEKVDSIRVVH 73
Query: 55 -------SRSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSH 107
RSD+RKDRVE +PEQL+AAS +A+R+ LTGR RV+GWYHSHPHITV PSH
Sbjct: 74 IHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSH 133
Query: 108 VDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIAL 162
VDVRTQAMYQ++D GF+GLIFSCF ED N K GR+ FQS +++ I P+ +
Sbjct: 134 VDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKSSDYERIEIPVHV 193
Query: 163 LPVNKSTVIDLESSL 177
+P + LES++
Sbjct: 194 VPHVTIGKVCLESAV 208
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 273 GAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQ 318
++Y R EIP+HV+P ++ K+ L S +L ++L +EE+ AY +
Sbjct: 181 SSDYERIEIPVHVVPHVTIGKV--CLESAVELPKILCQEEQDAYRR 224
>sp|Q5R9L6|BRCC3_PONAB Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii GN=BRCC3 PE=2
SV=1
Length = 247
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 107/168 (63%), Gaps = 21/168 (12%)
Query: 8 MSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQS------------ 55
+ D +L CL HALSTE EE+MGL +G++ + G ++
Sbjct: 14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVH 73
Query: 56 --------RSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSH 107
RSD+RKDRVE +PEQL+AAS +A+R+ LTGR RV+GWYHSHPHITV PSH
Sbjct: 74 IHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSH 133
Query: 108 VDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 154
VDVRTQAMYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 134 VDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
>sp|B0KWU8|BRCC3_CALJA Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus
GN=BRCC3 PE=3 SV=2
Length = 316
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 107/168 (63%), Gaps = 21/168 (12%)
Query: 8 MSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQS------------ 55
+ D +L CL HALSTE EE+MGL +G++ + G ++
Sbjct: 14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVH 73
Query: 56 --------RSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSH 107
RSD+RKDRVE +PEQL+AAS +A+R+ LTGR RV+GWYHSHPHITV PSH
Sbjct: 74 IHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSH 133
Query: 108 VDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 154
VDVRTQAMYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 134 VDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
>sp|P46736|BRCC3_HUMAN Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1
SV=2
Length = 316
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 107/168 (63%), Gaps = 21/168 (12%)
Query: 8 MSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQS------------ 55
+ D +L CL HALSTE EE+MGL +G++ + G ++
Sbjct: 14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVH 73
Query: 56 --------RSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSH 107
RSD+RKDRVE +PEQL+AAS +A+R+ LTGR RV+GWYHSHPHITV PSH
Sbjct: 74 IHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSH 133
Query: 108 VDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 154
VDVRTQAMYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 134 VDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
>sp|A5PJP6|BRCC3_BOVIN Lys-63-specific deubiquitinase BRCC36 OS=Bos taurus GN=BRCC3 PE=2
SV=1
Length = 316
Score = 171 bits (433), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 107/168 (63%), Gaps = 21/168 (12%)
Query: 8 MSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQS------------ 55
+ D +L CL HALSTE EE+MGL +G++ + G ++
Sbjct: 14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDLRNDPKFTYTGTEMRTVAEKVDTVRIVH 73
Query: 56 --------RSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSH 107
RSD+RKDRVE +PEQL+AAS +A+R+ LTGR RV+GWYHSHPHITV PSH
Sbjct: 74 IHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSH 133
Query: 108 VDVRTQAMYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 154
VDVRTQAMYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 134 VDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus
GN=C6.1al PE=2 SV=1
Length = 291
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 25/200 (12%)
Query: 3 LTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDI-EHSKNGNVTAL-------------- 47
+ V + D +L CL HALSTE EE+MGL +G + +H ++ + A
Sbjct: 9 VQAVYLESDAFLVCLNHALSTEKEEVMGLCIGQLNDHGRSDSRLAYAGAEMCTVAKKMEA 68
Query: 48 -----IWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHIT 102
I RSD+ KDRVE +PEQL+AAS +A+R+ TGR RV+GWYHSHPHIT
Sbjct: 69 TRIVHIHSVIILRRSDKTKDRVEISPEQLSAASIEAERLAEQTGRPMRVVGWYHSHPHIT 128
Query: 103 VLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDA-NKVGRIQVIAFQSSDGKQN----HIS 157
V PSHVDVRTQAMYQ++D F+GLIF+CF ED K+GR+ FQS ++ +
Sbjct: 129 VWPSHVDVRTQAMYQMMDQSFVGLIFACFIEDKPTKIGRVLYTCFQSVQASKSSEYERLE 188
Query: 158 KPIALLPVNKSTVIDLESSL 177
PI ++P + L S++
Sbjct: 189 IPIHIVPRTTIGTVCLRSAI 208
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 274 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQ 318
+EY R EIP+H++P +++ + L S +L +L +EE+ AY +
Sbjct: 182 SEYERLEIPIHIVPRTTIGTV--CLRSAIELPGILCQEEQEAYRR 224
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L HA S E+MGL+LGD NVT + A PQS + + V+
Sbjct: 29 VNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVF--AMPQSGTSVTVESVD 86
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
+ D + L GRT V+GWYHSHP S VDV TQ ++ L +
Sbjct: 87 P-----VYQTKHMDLLK-LVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140
Query: 126 LIFSCFSEDANKVGRIQVIAFQS 148
++ G++ + AF+S
Sbjct: 141 VVVDPIQSVK---GKVMLDAFRS 160
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H+ + E+MGL+LGD NV + A PQS + + V+
Sbjct: 32 VYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVF--AMPQSGTGVSVEAVD 89
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
QA M +L TGR V+GWYHSHP S VDV TQ ++ L++
Sbjct: 90 D--------VFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRA 141
Query: 124 IGLIFSCFSEDANKV 138
+ ++ KV
Sbjct: 142 VAVVVDPIQSVKGKV 156
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
+K+S L + HA S T E+MGL+LG +E + + A A P ++ R +
Sbjct: 52 IKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAF---ALPVEGTETRVNAQA 108
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
E + A A + GR +GWYHSHP S +DV TQ + Q F+
Sbjct: 109 QAYEYMTAYMEAAKEV----GRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVA 164
Query: 126 LI 127
++
Sbjct: 165 IV 166
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG+ NV + A PQS + + V+
Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVF--AMPQSGTGVSVEAVD 84
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
QA M +L TGR V+GWYHSHP S VDV TQ ++ L++
Sbjct: 85 D--------VFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRA 136
Query: 124 IGLIFSCFSEDANKVGRIQVIAFQSSD 150
+ ++ G++ + AF+ D
Sbjct: 137 VAVVVDPIQSVK---GKVVIDAFRLID 160
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana
GN=CSN5A PE=1 SV=1
Length = 358
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
VK+S L + HA S T EIMGL+ G + + + A P ++ R + +
Sbjct: 59 VKISALALLKMVVHARSGGTIEIMGLMQGKTD---GDTIIVMDAFALPVEGTETRVNAQD 115
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
E + S + L GR V+GWYHSHP S +DV TQ + Q F+
Sbjct: 116 DAYEYMVEYS----QTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLA 171
Query: 126 LIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIA---LLPVNK 167
++ G++++ AF++ +P++ +P+NK
Sbjct: 172 VVID--PTRTVSAGKVEIGAFRTYSKGYKPPDEPVSEYQTIPLNK 214
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 15/147 (10%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG+ NV + A PQS + + V+
Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVF--AMPQSGTGVSVEAVD 84
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
QA M +L TGR V+GWYHSHP S VDV TQ ++ L+
Sbjct: 85 D--------VFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRA 136
Query: 124 IGLIFSCFSEDANKVGRIQVIAFQSSD 150
+ ++ G++ + AF+ D
Sbjct: 137 VAVVVDPIQSVK---GKVVIDAFRLID 160
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
VK+S L + HA S E+MG+L+G +E N + + A P ++ R +
Sbjct: 54 VKISAIALLKMVMHARSGGKLEVMGMLMGKVE---NNTMIIMDSFALPVEGTETRVNA-- 108
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
Q+ A + + ++ TGR +GWYHSHP S +DV TQ++ Q +
Sbjct: 109 ----QVEAYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPW 164
Query: 124 IGLIFSCFSEDANKVGRIQVIAFQS 148
+G++ G++++ AF++
Sbjct: 165 LGIVID--PTRTVSAGKVEIGAFRT 187
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana
GN=CSN5B PE=1 SV=2
Length = 357
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 14 LTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAA 73
L + HA S T EIMGL+ G E + + A P ++ R + E +
Sbjct: 67 LKMVVHARSGGTIEIMGLMQGKTE---GDTIIVMDAFALPVEGTETRVNAQSDAYEYMVE 123
Query: 74 ASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSE 133
S + + L GR V+GWYHSHP S +DV TQ + Q F+ ++
Sbjct: 124 YS----QTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID--PT 177
Query: 134 DANKVGRIQVIAFQS-SDGKQ---NHISKPIALLPVNK 167
G++++ AF++ +G + +H+S+ +P+NK
Sbjct: 178 RTVSAGKVEIGAFRTYPEGHKISDDHVSE-YQTIPLNK 214
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG+ NV + A PQS + + V+
Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVF--AMPQSGTGVSVEAVD 90
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
A+ M TGR V+GWYHSHP S VD+ TQ ++ L +
Sbjct: 91 ------PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVA 144
Query: 126 LIFSCFSEDANKVGRIQVIAFQS 148
++ G++ + AF++
Sbjct: 145 VVVDPIQSVK---GKVVIDAFRT 164
>sp|Q8SQY3|RPN11_ENCCU 26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN11 PE=1 SV=1
Length = 294
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V++S L L H + E+MGL+LG+ V + A PQS ++ + V+
Sbjct: 21 VQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVF--AMPQSGTNVTVESVD 78
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 119
Q + M++L TGR V+GWYHSHP S VD+ TQ ++ L
Sbjct: 79 --------PIFQMEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKL 126
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans
GN=csn-5 PE=1 SV=1
Length = 368
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
+K+S L HA EIMGLL G I+ N + ++ A P ++ R +
Sbjct: 56 IKISAIALLKMTMHAKRGGNLEIMGLLQGRID--ANSFIILDVF-ALPVEGTETRVNAQA 112
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
E + S D GR +V+GWYHSHP S +DV TQ + Q ++
Sbjct: 113 QAYEYMTVYSEMCD----TEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVA 168
Query: 126 LIFSCFSEDANKVGRIQVIAFQS 148
++ G++ + AF++
Sbjct: 169 IVIDPLR--TMSAGKVDIGAFRT 189
>sp|Q7RXX8|CSN5_NEUCR COP9 signalosome complex subunit 5 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rri-1 PE=1 SV=1
Length = 336
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 29/212 (13%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGAS--PQSRSDRRKDR 63
V++S + + HA S E+MG++ G IE S T +I A P ++ R +
Sbjct: 44 VRISSVAMIKMVMHARSGGNLEVMGMMQGYIEGS-----TMVITDAYRLPVEGTETRVNA 98
Query: 64 VETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
+ E + + R+ R VIGWYHSHP S +DV TQ++ Q + F
Sbjct: 99 QDEANEYMV----EYLRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPF 154
Query: 124 IGLIFSCFSEDANKV---GRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLES-SLSS 179
+ ++ D ++ ++++ AF++ I + I +T D +S L+
Sbjct: 155 VAVVI-----DPDRTVSQNKVEIGAFRT-------IPEGIKPFAATNTTTGDGQSVPLNK 202
Query: 180 SESLSARSGNVLAENPE--QDTGDSKIVAGSW 209
E A S A + E + T DSK++ W
Sbjct: 203 VEDFGAHSHRYYALDVEHFKSTLDSKLLETLW 234
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG E + V + A PQ+ + + V+
Sbjct: 29 VYISSLALLKMLKHGRAGVPMEVMGLMLG--EFVDDYTVQVIDVFAMPQTGTGVSVEAVD 86
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
A+ M TGR V+GWYHSHP S VD+ TQ ++ L +
Sbjct: 87 ------PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVA 140
Query: 126 LIFSCFSEDANKV 138
++ KV
Sbjct: 141 VVVDPIQSVKGKV 153
>sp|Q4P804|CSN5_USTMA COP9 signalosome complex subunit 5 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=RRI1 PE=3 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V++S + + HA S EIMGL+ G I+ +N + + A P ++ R +
Sbjct: 61 VRISAVALIKMVMHARSGGIYEIMGLMQGKID-VENRTLYVMDSFALPVEGTETRVNAQN 119
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
E + + + GR V+GWYHSHP S +DV TQ Q F+
Sbjct: 120 EAYEYMVQYLDHSKEV----GRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVA 175
Query: 126 LIFSCFSEDANKV---GRIQVIAFQS 148
++ D N+ G++ + AF++
Sbjct: 176 IVI-----DPNRTISSGKVDIGAFRT 196
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG E + V + A PQS + + V+
Sbjct: 31 VYISSLALLKMLKHGRAGVPMEVMGLMLG--EFVDDYTVRVIDVFAMPQSGTGVSVEAVD 88
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
A+ M TGR V+GWYHSHP S VD+ TQ ++ L +
Sbjct: 89 ------PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVA 142
Query: 126 LIFSCFSEDANKV 138
++ KV
Sbjct: 143 VVVDPIQSVKGKV 155
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG E + V + A PQS + + V+
Sbjct: 31 VYISSLALLKMLKHGRAGVPMEVMGLMLG--EFVDDYTVRVIDVFAMPQSGTGVSVEAVD 88
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
A+ M TGR V+GWYHSHP S VD+ TQ ++ L +
Sbjct: 89 ------PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVA 142
Query: 126 LIFSCFSEDANKV 138
++ KV
Sbjct: 143 VVVDPIQSVKGKV 155
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H + E+MGL+LG+ V + A PQS + + V+
Sbjct: 30 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVF--AMPQSGTGVSVEAVD 87
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
Q + + +L TGR V+GWYHSHP S VD+ TQ ++ L+
Sbjct: 88 --------HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRA 139
Query: 124 IGLIFSCFSEDANKVGRIQVIAFQS 148
+ ++ G++ + AF+S
Sbjct: 140 VAVVVDPIQSVK---GKVVIDAFRS 161
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
+ +S L L HA + E+MGL+LG++ V + A PQS + + ++
Sbjct: 31 IHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVF--AMPQSGTSVSVEAID 88
Query: 66 TNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIG 125
+ M TGR VIGWYHSHP S VDV TQ ++ L + +
Sbjct: 89 ------PVFQTKMLDMLKQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVA 142
Query: 126 LIFSCFSEDANKVGRIQVIAFQS 148
++ + G++ + AF++
Sbjct: 143 VVVDPLQ---SVRGKVVIDAFRT 162
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
V +S L L H E+MGL+LG E + V + A PQS + + V+
Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLG--EFVDDFTVRVVDVFAMPQSGTGVSVEAVD 87
Query: 66 TNPEQLAAASAQADRMTVL--TGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGF 123
Q + M +L TGR V+GWYHSHP S VD+ TQ ++ L
Sbjct: 88 --------PVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRA 139
Query: 124 IGLIFSCFSEDANKV 138
+ ++ KV
Sbjct: 140 VAVVVDPIQSVKGKV 154
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCF 131
+Q L R VIGWYHSHP PS D+ TQA YQ G FIG+I S +
Sbjct: 638 SQTQASETLAARGYSVIGWYHSHPAFDPNPSIRDIDTQAKYQSYFSRGGAMFIGMIVSPY 697
Query: 132 SEDANKVGRIQVIAFQSSD 150
+ + N + Q+ SD
Sbjct: 698 NRN-NPLPYSQITCLVISD 715
>sp|P0CQ24|CSN5_CRYNJ COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RRI1 PE=3 SV=1
Length = 371
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
VK+S + +THA S EIMG++ G + ++G + A P ++ R +
Sbjct: 51 VKISAVALIKMVTHARSGGIYEIMGIMYGKV---RDGTFWIMDVAALPVQGTETRVNAGN 107
Query: 66 TNPEQLA---AASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTG 122
E + A+A+A G+ + GWYHSHP S +DV TQ Q +
Sbjct: 108 EAMEYMVNFQTANAEA-------GKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDP 160
Query: 123 FIGLIFSCFSEDANK---VGRIQVIAFQS 148
++ ++ D N+ G++++ AF++
Sbjct: 161 YLAVVI-----DPNRTVSAGKVEIGAFRT 184
>sp|P0CQ25|CSN5_CRYNB COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RRI1 PE=3 SV=1
Length = 371
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE 65
VK+S + +THA S EIMG++ G + ++G + A P ++ R +
Sbjct: 51 VKISAVALIKMVTHARSGGIYEIMGIMYGKV---RDGTFWIMDVAALPVQGTETRVNAGN 107
Query: 66 TNPEQLA---AASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTG 122
E + A+A+A G+ + GWYHSHP S +DV TQ Q +
Sbjct: 108 EAMEYMVNFQTANAEA-------GKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDP 160
Query: 123 FIGLIFSCFSEDANK---VGRIQVIAFQS 148
++ ++ D N+ G++++ AF++
Sbjct: 161 YLAVVI-----DPNRTVSAGKVEIGAFRT 184
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCF 131
+Q L R VIGWYHSHP PS D+ TQA YQ G FIG+I S +
Sbjct: 627 SQTQASETLALRGYSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPY 686
Query: 132 S 132
+
Sbjct: 687 N 687
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCF 131
+Q L R VIGWYHSHP PS D+ TQA YQ G FIG+I S +
Sbjct: 636 SQTQASETLAVRGFSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPY 695
Query: 132 SED 134
+ +
Sbjct: 696 NRN 698
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCF 131
+Q L R VIGWYHSHP PS D+ TQA YQ G F+G+I S +
Sbjct: 607 SQTQASEALASRGYSVIGWYHSHPAFDPNPSIRDIDTQAKYQNYFSRGGAKFLGMIISPY 666
Query: 132 S 132
+
Sbjct: 667 N 667
>sp|O94454|CSN5_SCHPO COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn5 PE=1 SV=1
Length = 299
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 3 LTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKD 62
VK+S L L H E+MG + G +E ++ L A P ++ R +
Sbjct: 32 FRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVE---GASLIILDSFALPVEGTETRVN 88
Query: 63 RVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTG 122
E E S Q + R VIGWYHSHP+ S VDV TQ Q
Sbjct: 89 AHEEAQE----YSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDP 144
Query: 123 FIGLIF 128
F+ ++
Sbjct: 145 FVAVVL 150
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2
SV=1
Length = 334
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 7 KMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG--ASPQSRSDRRKDRV 64
K+S L + HA S E+MGL+LG ++ T +I A P ++ R +
Sbjct: 54 KLSALALLKMVMHARSGGNLEVMGLMLGKVDGE-----TMIIMDSFALPVEGTETRVNAQ 108
Query: 65 ETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFI 124
E +AA A ++ GR IGWYHSHP S +DV TQ + Q F+
Sbjct: 109 AAAYEYMAAYIENAKQV----GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFV 164
Query: 125 GLI 127
++
Sbjct: 165 AVV 167
>sp|Q4IJM4|CSN5_GIBZE COP9 signalosome complex subunit 5 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRI1 PE=3
SV=1
Length = 340
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGA------SPQSRSDR 59
V++S + HA S E+MGL+ G + T ++ A ++R +
Sbjct: 52 VRISATALIKMTMHARSGGNLEVMGLMQGYTQGD-----TFIVTDAFRLPVEGTETRVNA 106
Query: 60 RKDRVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 119
+ + E E L AQ GR V+GWYHSHP S +DV T+AM Q
Sbjct: 107 QDEANEYIVEYLDLCRAQ--------GRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQF 158
Query: 120 DTGFIGLIFSCFSEDANKVGRIQVIAFQS 148
F+ ++ + G++ + AF++
Sbjct: 159 QDPFLAVVID--PDRTINSGKVDIGAFRT 185
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1
SV=4
Length = 334
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 7 KMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG--ASPQSRSDRRKDRV 64
K+S L + HA S E+MGL+LG ++ T +I A P ++ R +
Sbjct: 56 KISALALLKMVMHARSGGNLEVMGLMLGKVDGE-----TMIIMDSFALPVEGTETRVNAQ 110
Query: 65 ETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFI 124
E +AA A ++ GR IGWYHSHP S +DV TQ + Q F+
Sbjct: 111 AAAYEYMAAYIENAKQV----GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFV 166
Query: 125 GLI 127
++
Sbjct: 167 AVV 169
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1
SV=3
Length = 334
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 7 KMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG--ASPQSRSDRRKDRV 64
K+S L + HA S E+MGL+LG ++ T +I A P ++ R +
Sbjct: 56 KISALALLKMVMHARSGGNLEVMGLMLGKVDGE-----TMIIMDSFALPVEGTETRVNAQ 110
Query: 65 ETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFI 124
E +AA A ++ GR IGWYHSHP S +DV TQ + Q F+
Sbjct: 111 AAAYEYMAAYIENAKQV----GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFV 166
Query: 125 GLI 127
++
Sbjct: 167 AVV 169
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 7 KMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG--ASPQSRSDRRKDRV 64
K+S L + HA S E+MGL+LG ++ T +I A P ++ R +
Sbjct: 54 KVSALALLKMVMHARSGGNLEVMGLMLGKVDGE-----TMIIMDSFALPVEGTETRVNAQ 108
Query: 65 ETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFI 124
E +AA A ++ GR IGWYHSHP S +DV TQ + Q F+
Sbjct: 109 AAAYEYMAAYIENAKQV----GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFV 164
Query: 125 GLI 127
++
Sbjct: 165 AVV 167
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5
PE=2 SV=1
Length = 334
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 7 KMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWG--ASPQSRSDRRKDRV 64
K+S L + HA S E+MGL+LG ++ T +I A P ++ R +
Sbjct: 56 KVSALALLKMVMHARSGGNLEVMGLMLGKVDGE-----TMIIMDSFALPVEGTETRVNAQ 110
Query: 65 ETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFI 124
E +AA A ++ GR IGWYHSHP S +DV TQ + Q F+
Sbjct: 111 AAAYEYMAAYIENAKQV----GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFV 166
Query: 125 GLI 127
++
Sbjct: 167 AVV 169
>sp|Q6BMQ3|CSN5_DEBHA COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRI1 PE=3 SV=2
Length = 469
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 19 HALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQA 78
HA S E+MG++ G I KN + ++ P ++ R + E + +
Sbjct: 76 HAKSGGAIEVMGMMTGKI--IKNSIIVMDVYPL-PVEGTETRVNAQAEGYEYMVQYLENS 132
Query: 79 DRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCF-SEDANK 137
++ GR ++GWYHSHP S +DV TQ++ Q ++ ++ +ED
Sbjct: 133 KQV----GRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQ-- 186
Query: 138 VGRIQVIAFQS 148
G++++ AF++
Sbjct: 187 -GKVEIGAFRT 196
>sp|Q3TV65|MPND_MOUSE MPN domain-containing protein OS=Mus musculus GN=Mpnd PE=2 SV=2
Length = 487
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 AASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQL 118
AA+ + + VL R ++GWYHSHPH +PS D+ Q YQL
Sbjct: 312 AATVEEEIYQVLFLRGLSLVGWYHSHPHSPAVPSLQDIDAQMEYQL 357
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQ-LLDTG---FIGLIFSCF 131
+Q VL + V+GWYHSHP PS D+ TQA YQ G FIG+I S +
Sbjct: 576 SQTQASEVLGVKGLSVVGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAPFIGMIVSPY 635
>sp|Q6C703|CSN5_YARLI COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RRI1 PE=3 SV=1
Length = 354
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 19 HALSTETEEIMGLLLGDIEHSKNGNVTALIWGASP------QSRSDRRKDRVETNPEQLA 72
HA S E+MG++ G I + T ++ P ++R + +++ +E E L
Sbjct: 69 HARSGGAIEVMGMMTGKILPN-----TFVVMDCYPLPVEGTETRVNAQQEGIEFMVEYLQ 123
Query: 73 AASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFS 132
GR ++GWYHSHP S +DV TQ Q F+ ++
Sbjct: 124 GLKD--------VGRRENIVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVV---- 171
Query: 133 EDANK---VGRIQVIAFQS 148
D N+ G++++ AF++
Sbjct: 172 -DPNRTISAGKVEIGAFRT 189
>sp|Q5BBF1|CSN5_EMENI COP9 signalosome complex subunit 5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rri1 PE=1 SV=2
Length = 335
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 15/171 (8%)
Query: 3 LTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKD 62
V++S L + HA S + E+MGL+ G I N V + + R
Sbjct: 48 FKSVRISAVALLKMVMHARSGGSLEVMGLMQGYI--LPNTFVVTDAFRLPVEGTETRVNA 105
Query: 63 RVETNPEQLAAASAQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTG 122
+ E N + + Q+ R GR +GWYHSHP S +DV TQ M Q +
Sbjct: 106 QDEAN--EYMVSYLQSCREA---GRMENAVGWYHSHPGYGCWLSGIDVSTQDM-QQMSGP 159
Query: 123 FIGLIFSCFSEDANKVGRIQVIAFQS-----SDGKQNHISKPIALLPVNKS 168
F+ ++ E G++ + AF++ + K+ +P+NK+
Sbjct: 160 FVAVVID--PERTISAGKVDIGAFRTFPKDYTPPKEEQEEDEYQTVPLNKA 208
>sp|Q6CRJ8|CSN5_KLULA COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=RRI1 PE=3 SV=1
Length = 373
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 17 LTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASA 76
L+HA+ E+MG+L+G ++ N + + P ++ R + + +
Sbjct: 77 LSHAVDGGDIEVMGMLVG---YTSNDMIVVKDCYSLPVQGTETRVNA------HMESYEY 127
Query: 77 QADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLI 127
+ + +++GWYHSHP S++D++TQ++ Q ++ ++
Sbjct: 128 MVQYLDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIV 178
>sp|Q59PG6|CSN5_CANAL COP9 signalosome complex subunit 5 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RRI1 PE=3 SV=1
Length = 213
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18 THALSTETEEIMGLLLGDIE-HSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASA 76
THA + + EIMG+L+G I HS T + ++R + + + E L
Sbjct: 87 THAQTGGSIEIMGMLVGKISGHSIIVMDTYRLPVEGTETRVNAQNEAYTYMVEYLT---- 142
Query: 77 QADRMTVLTGRTTR-VIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDA 135
+R + G+ ++GWYH HP +DV TQ++ Q L ++ ++
Sbjct: 143 --ERQQLSNGKNEENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVK--T 198
Query: 136 NKVGRIQVIAFQS 148
K G++++ AF++
Sbjct: 199 LKQGKVEIGAFRN 211
>sp|Q8N594|MPND_HUMAN MPN domain-containing protein OS=Homo sapiens GN=MPND PE=1 SV=1
Length = 471
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 87 RTTRVIGWYHSHPHITVLPSHVDVRTQAMYQL 118
R ++GWYHSHPH LPS D+ Q YQL
Sbjct: 340 RGLSLVGWYHSHPHSPALPSLQDIDAQMDYQL 371
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,769,323
Number of Sequences: 539616
Number of extensions: 5081592
Number of successful extensions: 14276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14104
Number of HSP's gapped (non-prelim): 149
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)