Query 018450
Match_columns 355
No_of_seqs 165 out of 1126
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kks_A Uncharacterized protein 99.9 2.1E-27 7.3E-32 205.8 15.9 135 6-163 2-136 (146)
2 4b4t_V 26S proteasome regulato 99.9 3.3E-27 1.1E-31 228.3 15.8 138 2-151 23-161 (306)
3 2kcq_A MOV34/MPN/PAD-1 family; 99.9 1.3E-27 4.5E-32 208.6 11.5 139 6-165 1-142 (153)
4 2znr_A AMSH-like protease; met 99.9 2.9E-27 9.8E-32 212.8 9.5 166 2-203 7-178 (178)
5 3rzv_A STAM-binding protein; u 99.9 3.2E-24 1.1E-28 198.1 9.1 166 2-203 40-211 (211)
6 2o95_A 26S proteasome non-ATPa 99.9 9.6E-21 3.3E-25 169.8 16.5 131 2-149 6-142 (187)
7 1oi0_A AF2198, hypothetical pr 99.8 8.3E-21 2.8E-25 160.2 9.3 108 5-148 3-111 (124)
8 4e0q_A COP9 signalosome comple 99.7 2.3E-17 8E-22 143.2 9.9 129 3-148 5-138 (141)
9 4b4t_U RPN8, 26S proteasome re 99.4 1E-11 3.5E-16 121.3 18.5 131 2-149 4-140 (338)
10 2og4_A PRE-mRNA-splicing facto 99.0 2.2E-09 7.7E-14 101.3 11.0 127 4-151 38-167 (254)
11 2p8r_A PRP8, PRE-mRNA-splicing 98.9 5E-09 1.7E-13 99.8 11.0 124 4-150 39-169 (273)
12 3sbg_A PRE-mRNA-splicing facto 98.1 2E-05 6.8E-10 80.7 11.4 125 5-152 350-479 (565)
13 2qlc_A DNA repair protein RADC 92.0 0.57 2E-05 39.5 8.1 87 9-114 7-93 (126)
14 3nm8_A Tyrosinase; TYPE3 coppe 20.1 37 0.0013 32.4 1.6 34 271-328 1-34 (303)
No 1
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.95 E-value=2.1e-27 Score=205.81 Aligned_cols=135 Identities=21% Similarity=0.263 Sum_probs=113.0
Q ss_pred EEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCeeecCHHHHHHHHHHHHHhhhhc
Q 018450 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVLT 85 (355)
Q Consensus 6 V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~~~~feiDPeel~~A~~eae~m~~~~ 85 (355)
|.|++.++.+|++||++++|.|+||+|+|+...+ ...|..++|++|....+++|.+||+++.+++++++.
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~-----~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~----- 71 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGD-----DRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK----- 71 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETT-----EEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH-----
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCC-----CcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH-----
Confidence 7899999999999999999999999999998654 134566788888766778999999999999988865
Q ss_pred CCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEeeCCCceeEeeeeEEe
Q 018450 86 GRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALL 163 (355)
Q Consensus 86 ~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl~dg~~~~i~ipi~v~ 163 (355)
+|+++||||||||+.+++||..|+. ++.+++++|||+++..+ +...++||++.+|+..+ +||.+.
T Consensus 72 -~g~~ivG~~HSHP~~~~~PS~~D~~-----~~~~~~~~~lIvs~~~~-----~~~~~~af~~~~~~~~e--~~i~~~ 136 (146)
T 2kks_A 72 -NGWVMLGNFHSHPATPARPSAEDKR-----LAFDPSLSYLIISLAEP-----QKPVCKSFLIKKDGVDE--EEIILK 136 (146)
T ss_dssp -HTCEEEEEEEEESSSCSSCCHHHHT-----TCCSSSCEEEEEECSCS-----SSCEEEEEEECSSCEEE--ECEEEE
T ss_pred -CCCEEEEEEeCCCcCCCCCCHHHHH-----hhhcCCCeEEEEEccCC-----CceEEEEEEEeCCeEEE--EEEEEe
Confidence 6899999999999999999999998 34568999999998642 35789999997776654 444443
No 2
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-27 Score=228.32 Aligned_cols=138 Identities=28% Similarity=0.389 Sum_probs=115.4
Q ss_pred cccEEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCeee-cCHHHHHHHHHHHHH
Q 018450 2 SLTGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE-TNPEQLAAASAQADR 80 (355)
Q Consensus 2 sl~~V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~~~~fe-iDPeel~~A~~eae~ 80 (355)
+.+.|+|++.|+++|++||+++.|.||||+|+|...++. +..|+.+||++..+ ..++++ +++.. +.+|.+
T Consensus 23 ~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~----~v~Vt~~f~~P~~~-~~~~v~~~d~~y----~~~m~~ 93 (306)
T 4b4t_V 23 TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDY----TVNVVDVFAMPQSG-TGVSVEAVDDVF----QAKMMD 93 (306)
T ss_dssp SCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTT----EEEEEEEECCCCEE-SSSCEECCCHHH----HHHHHH
T ss_pred CCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCe----EEEEEEEEeCCcCC-CCCchhcCCHHH----HHHHHH
Confidence 357899999999999999999999999999999865442 34567777776542 345555 56643 455667
Q ss_pred hhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEeeCC
Q 018450 81 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDG 151 (355)
Q Consensus 81 m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl~dg 151 (355)
+.+++++++.+||||||||++++|||..|+.||..||.+.+++|+||+||.+ +.+|++.++|||+.+.
T Consensus 94 ~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~---t~~G~~~i~Afr~~~~ 161 (306)
T 4b4t_V 94 MLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQ---SVKGKVVIDAFRLIDT 161 (306)
T ss_dssp HHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSS---SSSCSSCEEEEECCHH
T ss_pred HHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCc---CCCCceeeeEEEecCc
Confidence 7888999999999999999999999999999999999999999999999985 4569999999999853
No 3
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.95 E-value=1.3e-27 Score=208.61 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=111.8
Q ss_pred EEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCC--CCCCCeeecCHHHHHHHHHHHHHhhh
Q 018450 6 VKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRS--DRRKDRVETNPEQLAAASAQADRMTV 83 (355)
Q Consensus 6 V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~ns--d~~~~~feiDPeel~~A~~eae~m~~ 83 (355)
+.|++.++.+|+.||++++|.|+||||+|+...+. +..|..++|++|. +.+.++|++||+++.++++++++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~----~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~--- 73 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDG----DNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQE--- 73 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTS----CEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHH---
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCC----CeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHH---
Confidence 46899999999999999999999999999986211 1234566788886 66788999999999999888765
Q ss_pred hcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCc-eEEEEEEeeCCCceeEeeeeEE
Q 018450 84 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGR-IQVIAFQSSDGKQNHISKPIAL 162 (355)
Q Consensus 84 ~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~-~~lrAFRl~dg~~~~i~ipi~v 162 (355)
+|+++||||||||+++++||.+|+. ++..++++|||+++.. |+ ..++||++.+++....+.||.+
T Consensus 74 ---~g~~ivG~yHSHP~~~~~PS~~D~~-----~~~~~~~~~lIvs~~~------~~~~~~~af~~~~~~g~~~e~~i~v 139 (153)
T 2kcq_A 74 ---QGLDVVGVYHSHPDHPARPSATDLE-----EATFPGFTYVIVSVRD------GAPEALTAWALAPDRSEFHREDIVR 139 (153)
T ss_dssp ---HTCEEEEEEEECSSSSSSCCHHHHH-----TCCCTTSEEEEEEEET------TEEEEEEEEEECTTCSCEEEECCBC
T ss_pred ---CCCeEEEEEeCCCCCCCCCCHHHHH-----hhhcCCCeEEEEECCC------CCccEEEEEEEeCCCCcEEEEEEEE
Confidence 6899999999999999999999997 3456899999999864 33 5799999964443445666666
Q ss_pred eec
Q 018450 163 LPV 165 (355)
Q Consensus 163 ~p~ 165 (355)
.+.
T Consensus 140 ~~~ 142 (153)
T 2kcq_A 140 PDP 142 (153)
T ss_dssp CCS
T ss_pred ecC
Confidence 544
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.94 E-value=2.9e-27 Score=212.77 Aligned_cols=166 Identities=24% Similarity=0.279 Sum_probs=125.9
Q ss_pred cccEEEECHHHHHHHHHHHccCCC--ceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCeee-cCHHHHHHHHHHH
Q 018450 2 SLTGVKMSEDVWLTCLTHALSTET--EEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE-TNPEQLAAASAQA 78 (355)
Q Consensus 2 sl~~V~Is~~vll~Il~HA~s~~P--~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~~~~fe-iDPeel~~A~~ea 78 (355)
++++|.|+++++.+|++||+...| .|+||+|+|+...+ ...|..++|..+. .+.++++ .++++..++ +
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~-----~~~V~~v~~~pq~-~t~~~~~~~~~~e~~~~---~ 77 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN-----EFTITHVIVPKQS-AGPDYCDMENVEELFNV---Q 77 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT-----EEEEEEEEECCEE-EETTEEEECCHHHHHHH---H
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC-----CeEEEEEEeCCcC-CCCCeeccCCHHHHHHH---H
Confidence 478899999999999999998755 69999999998654 2234555555543 2344555 566654433 2
Q ss_pred HHhhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEeeCCCcee---
Q 018450 79 DRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNH--- 155 (355)
Q Consensus 79 e~m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl~dg~~~~--- 155 (355)
+ ++++++||||||||+.+++||..|+++|+.||.+++++++||+||... .++|||+.++....
T Consensus 78 ~------~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--------~~~afrl~~~g~~~~~~ 143 (178)
T 2znr_A 78 D------QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--------DTGIFRLTNAGMLEVSA 143 (178)
T ss_dssp H------HHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--------EEEEEEECHHHHHHHHH
T ss_pred H------hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--------cceEEEEECCcEeeecc
Confidence 2 378999999999999999999999999999999999999999999742 48999999765543
Q ss_pred EeeeeEEeecCCCccccccccccccccccccccccccCCCCCCCCccc
Q 018450 156 ISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAENPEQDTGDSK 203 (355)
Q Consensus 156 i~ipi~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (355)
+. .-.++||...+.++ ..-+||...+...+.+|+|
T Consensus 144 ~~-~~~f~p~~~~~~~~------------~~~~~~~~~~~~~~~~~~r 178 (178)
T 2znr_A 144 CK-KKGFHPHTKEPRLF------------SICKHVLVKDIKIIVLDLR 178 (178)
T ss_dssp CC-CCSSCCCCCSSCSE------------EECSSEEEECCCCEEEECC
T ss_pred cC-CCCcccCCCCCCce------------EEeceEEEeCCeeEEEecC
Confidence 22 23478887776666 2347887766667888876
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.90 E-value=3.2e-24 Score=198.09 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=120.2
Q ss_pred cccEEEECHHHHHHHHHHHccCC--CceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCeee-cCHHHHHHHHHHH
Q 018450 2 SLTGVKMSEDVWLTCLTHALSTE--TEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVE-TNPEQLAAASAQA 78 (355)
Q Consensus 2 sl~~V~Is~~vll~Il~HA~s~~--P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~~~~fe-iDPeel~~A~~ea 78 (355)
.++.|.|+++++.+|+.||+... +.|+||+|+|+...+ +..|+.++..... .+.+++. .+++++.+++
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~-----~~~I~~v~~ppq~-gt~~~v~~~~~~e~~~~~--- 110 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRN-----EFTITHVLIPKQS-AGSDYCNTENEEELFLIQ--- 110 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETT-----EEEEEEEEECCEE-ECSSCEEECCHHHHHHHH---
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCC-----CEEEEEEEeCCcc-CCCCceeccChHHHHHHH---
Confidence 35789999999999999999974 589999999998753 1223333321211 1234444 4555544333
Q ss_pred HHhhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEeeCCCce---e
Q 018450 79 DRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQN---H 155 (355)
Q Consensus 79 e~m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl~dg~~~---~ 155 (355)
+. +++++||||||||+.+++||..|+.||+.||.+++++++||+||.. .+++|||+.+.... .
T Consensus 111 ~~------~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~--------~~lgaFrLtp~G~~~~~~ 176 (211)
T 3rzv_A 111 DQ------QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF--------QETGFFKLTDHGLEEISS 176 (211)
T ss_dssp HH------HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT--------TEEEEEEECHHHHHHHHH
T ss_pred hh------CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--------CeeeEEEeccchhhhhhc
Confidence 11 6899999999999999999999999999999999999999999963 27999999965443 2
Q ss_pred EeeeeEEeecCCCccccccccccccccccccccccccCCCCCCCCccc
Q 018450 156 ISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAENPEQDTGDSK 203 (355)
Q Consensus 156 i~ipi~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (355)
+. .-.++||...+.++- .-+||...+.-.+.+|+|
T Consensus 177 c~-~~~fhph~~~~~~~~------------~~~hv~~~~~~~~~~dlr 211 (211)
T 3rzv_A 177 CR-QKGFHPHSKDPPLFC------------SCSHVTVVDRAVTITDLR 211 (211)
T ss_dssp CC-CCSSCCCCCSSCSEE------------ECSSEEEECCCCEEEECC
T ss_pred cc-cCCcccCCCCCCceE------------EeeeEEEcCCEeEEEeCC
Confidence 22 235899988777762 223666555557777776
No 6
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.85 E-value=9.6e-21 Score=169.78 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=104.1
Q ss_pred cccEEEECHHHHHHHHHHHccC----CCceeEEEEeeeecCCCCceeEEEEEeeecCCCC--CCCCCeeecCHHHHHHHH
Q 018450 2 SLTGVKMSEDVWLTCLTHALST----ETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRS--DRRKDRVETNPEQLAAAS 75 (355)
Q Consensus 2 sl~~V~Is~~vll~Il~HA~s~----~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~ns--d~~~~~feiDPeel~~A~ 75 (355)
++.+|.|++.|+++|++||.+. .|.||||+|+|...++ +..|+.++|+.+. +..++.+.+|++.+
T Consensus 6 ~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~-----~v~V~~~f~lp~~~~~~~~~~~~~d~ey~---- 76 (187)
T 2o95_A 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKK-----VLDVSNSFAVPFDEDDKDDSVWFLDHDYL---- 76 (187)
T ss_dssp SCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSS-----EEEEEEEEEECEEECSSCTTSEEECHHHH----
T ss_pred CCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCC-----EEEEEEEEEeCCcccCCCcchhhcCHHHH----
Confidence 4789999999999999999774 8999999999998643 2456777777653 22234678998743
Q ss_pred HHHHHhhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEee
Q 018450 76 AQADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSS 149 (355)
Q Consensus 76 ~eae~m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl~ 149 (355)
.++.++.++.++++.+||||||||.. |..|+.+|..||...+.+++||+||... .+.+.++||++.
T Consensus 77 ~~m~~~~~~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~----~~~l~i~ay~~~ 142 (187)
T 2o95_A 77 ENMYGMFKKVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPK----DLGLPTEAYISV 142 (187)
T ss_dssp HHHHHHHHTTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTT----C-CCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCC----CCCcCeEEEEEe
Confidence 34556677889999999999999976 7788888888998889999999999642 234899999996
No 7
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.83 E-value=8.3e-21 Score=160.20 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=77.6
Q ss_pred EEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCC-CCeeecCHHHHHHHHHHHHHhhh
Q 018450 5 GVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRR-KDRVETNPEQLAAASAQADRMTV 83 (355)
Q Consensus 5 ~V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~-~~~feiDPeel~~A~~eae~m~~ 83 (355)
+|.|++.++.+|++||++++|+|+||+|+|+.. . |+..+|+++...+ ...|.+ ++
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~-----~----v~~~~~~p~~~~~~~~~f~~----------~~----- 58 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD-----V----MDELIFLPFVSGSVSAVIHL----------DM----- 58 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT-----E----ECEEEECCCCC--------------------------
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC-----E----EEEEEECCCCCCCcCceeee----------ee-----
Confidence 578999999999999999999999999999853 1 2333444432111 112321 11
Q ss_pred hcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEe
Q 018450 84 LTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS 148 (355)
Q Consensus 84 ~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl 148 (355)
..+++++||||||||+.+++||.+|+.+ +.+++.+|||+++.. +...+++|+.
T Consensus 59 -~~~~~~ivG~~HSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~------~~~~~~~f~~ 111 (124)
T 1oi0_A 59 -LPIGMKVFGTVHSHPSPSCRPSEEDLSL-----FTRFGKYHIIVCYPY------DENSWKCYNR 111 (124)
T ss_dssp ---CCCEEEEEEEEESSSCCSCCHHHHHH-----HHHSCSEEEEEETTC------CTTCEEEEET
T ss_pred -ccCCCEEEEEEEECcCCCCccCHHHHHh-----hhcCCCEEEEEEccC------CCceEEEEec
Confidence 2378999999999999999999999984 335799999999753 2357888887
No 8
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.71 E-value=2.3e-17 Score=143.25 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=95.3
Q ss_pred ccEEEECHHHHHHHHHHHccC-----CCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCeeecCHHHHHHHHHH
Q 018450 3 LTGVKMSEDVWLTCLTHALST-----ETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQ 77 (355)
Q Consensus 3 l~~V~Is~~vll~Il~HA~s~-----~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~~~~feiDPeel~~A~~e 77 (355)
...|.|++.|+++|++|+.+. .+.+++|+|+|...+. +..|+.+||+...+ ..+.+.+|.+. +.+
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~-----~veV~nsF~~p~~~-~~~~~~~d~~y----~~~ 74 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGR-----NIEIMNSFELKTDV-IGDETVINKDY----YNK 74 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETT-----EEEEEEEEECCEEE-ETTEEEECHHH----HHH
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCC-----EEEEEEEEEecccC-CCCceeecHHH----HHH
Confidence 457999999999999999763 5789999999998653 34567777665431 23457788753 456
Q ss_pred HHHhhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcCCCcEEEEEccCcCCccCCCceEEEEEEe
Q 018450 78 ADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQS 148 (355)
Q Consensus 78 ae~m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~p~~V~LIvSp~~~d~s~~g~~~lrAFRl 148 (355)
|.+++++.+.++.+||||||||. ++..|+.+|..|+...+..++||+||.. +..|++.++||..
T Consensus 75 m~~~~k~v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~---~~~g~Lp~~ay~s 138 (141)
T 4e0q_A 75 KEQQYKQVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLS---RSVDHLPLKLFES 138 (141)
T ss_dssp HHHHHHHHSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSC---CCCTTHHHHHHCC
T ss_pred HHHHHHHhCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCc---cCCCeEEEEEEEE
Confidence 67788889999999999999984 7889999999998888999999999964 3446677777754
No 9
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1e-11 Score=121.30 Aligned_cols=131 Identities=19% Similarity=0.281 Sum_probs=97.8
Q ss_pred cccEEEECHHHHHHHHHHHcc---CCCceeEEEEeeeecCCCCceeEEEEEeeecCC--CCCCCCCeeecCHHHHHHHHH
Q 018450 2 SLTGVKMSEDVWLTCLTHALS---TETEEIMGLLLGDIEHSKNGNVTALIWGASPQS--RSDRRKDRVETNPEQLAAASA 76 (355)
Q Consensus 2 sl~~V~Is~~vll~Il~HA~s---~~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~--nsd~~~~~feiDPeel~~A~~ 76 (355)
+.++|.|.+.|+++|++|+.+ ..+..|+|.|+|...+. +..|+.+|++. ..+...+.+.+|.+ +.+
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~-----~veV~nsF~~p~~e~~~~~~~~~~D~~----y~~ 74 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSS-----TIRVTNSFALPFEEDEKNSDVWFLDHN----YIE 74 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSS-----EEEEEEEEECCEEECSSSTTCEEECHH----HHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCC-----EEEEEEEEEeccccCCCCCccccccHH----HHH
Confidence 458999999999999999764 45678999999987643 33566666554 33333345567765 345
Q ss_pred HHHHhhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcC-CCcEEEEEccCcCCccCCCceEEEEEEee
Q 018450 77 QADRMTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD-TGFIGLIFSCFSEDANKVGRIQVIAFQSS 149 (355)
Q Consensus 77 eae~m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~-p~~V~LIvSp~~~d~s~~g~~~lrAFRl~ 149 (355)
.|.+++++++.++.+|||||++|. ++..|+..|..|.... +..+.+++++.. +.+...++||...
T Consensus 75 ~m~~~~kkV~~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~----~~~~lpi~aY~s~ 140 (338)
T 4b4t_U 75 NMNEMCKKINAKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQ----QGVGLPTDAYVAI 140 (338)
T ss_dssp HHHHHHHHHCCSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCC----CSSSCSEEEEEEE
T ss_pred HHHHHHhhcCccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCC----CCCCcceEEEEee
Confidence 677888899999999999999875 6677888888887654 467788888753 3467889999874
No 10
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.2e-09 Score=101.28 Aligned_cols=127 Identities=10% Similarity=0.173 Sum_probs=89.5
Q ss_pred cEEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCc--eeEEEEEeeecCCCCCCCCCeeecCHHHHHHHHHHHHHh
Q 018450 4 TGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNG--NVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRM 81 (355)
Q Consensus 4 ~~V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~--~it~~V~~a~P~~nsd~~~~~feiDPeel~~A~~eae~m 81 (355)
..+.|++.++.+.+..|.. ..++||+|.|....+... .|+.+|. .|+.. +.+.+.+..+. ...+..
T Consensus 38 ~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~~v~eI~~ivi--ppQ~g---t~~s~~~~~~~---p~~~~~-- 105 (254)
T 2og4_A 38 NVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVL--VPQLG---HVGSVQISNIP---DIGDLP-- 105 (254)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCTTEEEEEEEEC--CCEEE---ETTEEEECCCC---CCTTST--
T ss_pred cEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCCCeEEEEEEEE--CCccC---CCceEECCCcC---ccccch--
Confidence 4688999999999988765 468999999998544211 1222221 24332 23445542210 000000
Q ss_pred hhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhc-CCCcEEEEEccCcCCccCCCceEEEEEEeeCC
Q 018450 82 TVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL-DTGFIGLIFSCFSEDANKVGRIQVIAFQSSDG 151 (355)
Q Consensus 82 ~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~-~p~~V~LIvSp~~~d~s~~g~~~lrAFRl~dg 151 (355)
.-.+++.+||.|+||...++.|..|+.||+.||.+ .+..|+|+|++.. |...++||++.+.
T Consensus 106 ---~l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftp------gs~sl~af~LT~~ 167 (254)
T 2og4_A 106 ---DTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTP------GSVSLSAYNLTDE 167 (254)
T ss_dssp ---TCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEET------TEEEEEEEEECHH
T ss_pred ---hhcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCC------CCceeEEEEcChh
Confidence 12789999999999999999999999999999984 4899999999743 6788999999853
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.91 E-value=5e-09 Score=99.84 Aligned_cols=124 Identities=16% Similarity=0.231 Sum_probs=87.9
Q ss_pred cEEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCc--eeEEEEEeeecCCCCCCCCCeeecCHHHHHHHHHHHHHh
Q 018450 4 TGVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNG--NVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRM 81 (355)
Q Consensus 4 ~~V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~--~it~~V~~a~P~~nsd~~~~~feiDPeel~~A~~eae~m 81 (355)
..+.|++.++.+.+.-|.. ..++||+|.|....+... .|..+|. .|+.. +.+.+.+..+. ... ++
T Consensus 39 ~t~vlPknllkkFi~IADl--rTq~~G~LyG~s~~d~~~vkeI~~ivi--pPQ~g---t~~sv~~~~~~---p~~---~~ 105 (273)
T 2p8r_A 39 YTYILPKNILKKFITISDL--RTQIAGFMYGVSPPDNPQVKEIRCIVL--VPQTG---SHQQVNLPTQL---PDH---EL 105 (273)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEECCTTCTTEEEEEEEEC--CSBEE---CSSCEECCSSC---CCC---TT
T ss_pred cEEEecHHHHHHHHHHhhc--cceEEEEEeccCCCCCCCeEEEEEEEE--CCccC---CCceEECCCcC---cch---hh
Confidence 4688999999999977754 468999999997544211 1222221 34433 23455553210 000 11
Q ss_pred hhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhc---C--CCcEEEEEccCcCCccCCCceEEEEEEeeC
Q 018450 82 TVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL---D--TGFIGLIFSCFSEDANKVGRIQVIAFQSSD 150 (355)
Q Consensus 82 ~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~---~--p~~V~LIvSp~~~d~s~~g~~~lrAFRl~d 150 (355)
-.+++.+||.|+||...++.|..|+.||+.||.+ + +..|+|+|++.. |...++||++++
T Consensus 106 ----l~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftp------gs~sl~af~LT~ 169 (273)
T 2p8r_A 106 ----LRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTP------GSVSLTAYKLTP 169 (273)
T ss_dssp ----TTTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEET------TEEEEEEEEECH
T ss_pred ----hccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCC------CCceeEEEEcCh
Confidence 1789999999999999999999999999999875 4 489999999743 678999999985
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.06 E-value=2e-05 Score=80.66 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=84.7
Q ss_pred EEEECHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEee-e-cCCCCCCCCCeeecC--HHHHHHHHHHHHH
Q 018450 5 GVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGA-S-PQSRSDRRKDRVETN--PEQLAAASAQADR 80 (355)
Q Consensus 5 ~V~Is~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~~it~~V~~a-~-P~~nsd~~~~~feiD--Peel~~A~~eae~ 80 (355)
.+.|++.++.+.+.-|-. ..++||+|.|....+.. ++ ..|... + |+.. ..+.+.+. |+. +
T Consensus 350 tyVlPkNLLkKFI~IADl--rTQicGyLyG~sp~dn~-nV-kEI~cIVipPQ~G---t~~sv~lp~lp~h---------e 413 (565)
T 3sbg_A 350 VYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHP-KV-KEIKTVVLVPQLG---HVGSVQISNIPDI---------G 413 (565)
T ss_dssp EEEEEHHHHHHHHHHSCS--SSCCEEEEEEEEETTEE-EE-EEEEEEECCCEEE---CSSCEEECCCCCC---------T
T ss_pred EEEccHHHHHHHHHHhhc--cceeEEEEecCCCCCCC-Ce-EEEEEEEECCccC---CCceEECCCCCcc---------c
Confidence 578999999999977654 45899999999865421 11 222211 2 4433 23556554 210 0
Q ss_pred hhhhcCCCceEEEEEecCCCCCCCCCHHHHHHHHHHhhcC-CCcEEEEEccCcCCccCCCceEEEEEEeeCCC
Q 018450 81 MTVLTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD-TGFIGLIFSCFSEDANKVGRIQVIAFQSSDGK 152 (355)
Q Consensus 81 m~~~~~rgleVVGwYHSHP~~~a~PS~~DI~TQ~~yQ~~~-p~~V~LIvSp~~~d~s~~g~~~lrAFRl~dg~ 152 (355)
.+. .-.+++.+||.|+||.-.++.|..|+.||+.+-... ..++.+.|+. +.|...+.||.+.+.+
T Consensus 414 ~~~-~l~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsf------tPGS~SLsAy~LT~eG 479 (565)
T 3sbg_A 414 DLP-DTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS------TPGSVSLSAYNLTDEG 479 (565)
T ss_dssp TST-TCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEE------ETTEEEEEEEEECHHH
T ss_pred ccc-ccccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEe------cCCceEEEEEecCHhH
Confidence 000 126899999999999999999999999999662222 3667777765 3488999999998643
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=91.97 E-value=0.57 Score=39.48 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHccCCCceeEEEEeeeecCCCCceeEEEEEeeecCCCCCCCCCeeecCHHHHHHHHHHHHHhhhhcCCC
Q 018450 9 SEDVWLTCLTHALSTETEEIMGLLLGDIEHSKNGNVTALIWGASPQSRSDRRKDRVETNPEQLAAASAQADRMTVLTGRT 88 (355)
Q Consensus 9 s~~vll~Il~HA~s~~P~EvcGLLlG~~~~~~~~~it~~V~~a~P~~nsd~~~~~feiDPeel~~A~~eae~m~~~~~rg 88 (355)
++..+...+.......+.|...+|+=. .. ..++.. ...+ . ++-+...++|+++. +.|.+ .+
T Consensus 7 s~~~v~~~l~~~l~~~~~E~f~vl~Ld--~~--n~li~~-~~l~--~---Gt~~~~~v~pRei~---~~Al~------~~ 67 (126)
T 2qlc_A 7 GARDVFEYMKGRIPDETKEHLFVLFLS--TK--NQILRH-ETIT--I---GTLTASLIHPREIF---KAAIR------ES 67 (126)
T ss_dssp SHHHHHHHHTTCCSCTTSCEEEEEEEC--TT--CBEEEE-EEEE--E---SSCCGGGCCHHHHH---HHHHH------TT
T ss_pred CHHHHHHHHHHHhCcCCCeEEEEEEEc--CC--CCEEEE-EEec--C---CCCCcEeecHHHHH---HHHHH------cC
Confidence 344444555544556677875555422 11 122211 0011 1 23456677898764 34433 56
Q ss_pred ceEEEEEecCCCCCCCCCHHHHHHHH
Q 018450 89 TRVIGWYHSHPHITVLPSHVDVRTQA 114 (355)
Q Consensus 89 leVVGwYHSHP~~~a~PS~~DI~TQ~ 114 (355)
..-|...|-||++.+.||..|+..-.
T Consensus 68 A~~vIl~HNHPSG~~~PS~~D~~~T~ 93 (126)
T 2qlc_A 68 AHSIILVHNHPSGDVQPSNADKQVTS 93 (126)
T ss_dssp CSEEEEEEECSSSCCSCCHHHHHHHH
T ss_pred CcEEEEEecCCCCCCCCCHHHHHHHH
Confidence 68889999999999999999998443
No 14
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=20.07 E-value=37 Score=32.38 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCceeeeecceeeecCcccccccCCcchhhhHhHHHHHHHHHHHHHHHHHhhcCcc
Q 018450 271 MSGAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSNCL 328 (355)
Q Consensus 271 ~s~~~y~r~e~pl~v~~~~~~~~~~~~~~~~~~~~~~~~~ee~~a~~~~~~~~~~~~~ 328 (355)
||..--+|||+ +.|-.+||.+|..||+.-++.+.
T Consensus 1 ~~~~~~VRke~------------------------~~Ls~~Er~~yi~Av~~l~~~~~ 34 (303)
T 3nm8_A 1 MSNKYRVRKNV------------------------LHLTDTEKRDFVRTVLILKEKGI 34 (303)
T ss_dssp ---CCEEECBG------------------------GGCCHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCceeecch------------------------HHCCHHHHHHHHHHHHHHHhcCh
Confidence 56667788887 55678999999999977776554
Done!