Query 018451
Match_columns 355
No_of_seqs 215 out of 2044
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 15:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 5.8E-08 2E-12 78.8 6.3 66 256-321 39-105 (137)
2 3b5d_A Multidrug transporter E 98.1 2.3E-05 8E-10 61.0 9.5 64 257-320 40-104 (110)
3 3b5d_A Multidrug transporter E 97.9 4.1E-05 1.4E-09 59.6 8.5 70 91-160 34-104 (110)
4 2i68_A Protein EMRE; transmemb 97.9 4E-05 1.4E-09 62.0 8.3 69 92-160 35-104 (137)
5 3rko_J NADH-quinone oxidoreduc 47.5 1.2E+02 0.004 25.0 9.6 23 289-311 128-150 (184)
6 3l1l_A Arginine/agmatine antip 35.8 28 0.00096 32.4 4.0 24 303-326 410-433 (445)
7 3zux_A Transporter, ASBTNM; tr 34.4 2.6E+02 0.0087 25.1 10.6 52 286-337 273-327 (332)
8 2jwa_A Receptor tyrosine-prote 15.6 93 0.0032 19.2 2.1 13 312-324 27-39 (44)
9 2knc_A Integrin alpha-IIB; tra 12.9 2E+02 0.007 18.5 3.3 35 301-335 16-54 (54)
10 2jo1_A Phospholemman; FXYD1, N 11.0 1E+02 0.0035 21.1 1.4 38 304-341 22-59 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.60 E-value=5.8e-08 Score=78.77 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHH-HHHHHHHHHHHHHHHcCCCCchhhhhhhhHhhhhHHhhhhhc
Q 018451 256 VATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFFK 321 (355)
Q Consensus 256 ~~~~~~~~~~~~i~~~~~~~~si~-~~~~~v~siils~~~fge~~t~~~~iG~~lv~~Gi~~~~~~k 321 (355)
+..++++++.+++++.++.++..+ ..+.+++++++|+++|||++++.+++|+++++.|++.....+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445566788889999999988888 899999999999999999999999999999999988876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.06 E-value=2.3e-05 Score=60.97 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhChHHHHHH-HHHHHHHHHHHHHHHcCCCCchhhhhhhhHhhhhHHhhhhh
Q 018451 257 ATTSQFFISYTIRTFGALTFATI-MTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFGALYTRSFF 320 (355)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~~~si~-~~~~~v~siils~~~fge~~t~~~~iG~~lv~~Gi~~~~~~ 320 (355)
..++.++...++++.+..++..+ ..+.++.+.++++++|||++|+.+++|+.+++.|+......
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455677779999999998777 89999999999999999999999999999999998876544
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.92 E-value=4.1e-05 Score=59.60 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhHHhhhcCchhHHHHH-hhhchHHHHHHHHHHhccccCchhhHHHHHHHHhhHHhhcc
Q 018451 91 CLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 160 (355)
Q Consensus 91 ~~~~~~~~~~~~~~~~sl~~ls~~~~~i~-ks~~pi~v~i~~~l~~~~k~s~~~~ls~~li~~Gv~l~~~~ 160 (355)
+...+++..+..+...+++++|.+..-.+ ....|+.+.+++++++||++++.+++++.++++|+.+....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33344567788888999999999876444 78999999999999999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.90 E-value=4e-05 Score=61.95 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhHHhhhcCchhHHHHH-hhhchHHHHHHHHHHhccccCchhhHHHHHHHHhhHHhhcc
Q 018451 92 LVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 160 (355)
Q Consensus 92 ~~~~~~~~~~~~~~~sl~~ls~~~~~i~-ks~~pi~v~i~~~l~~~~k~s~~~~ls~~li~~Gv~l~~~~ 160 (355)
...+++.++..+.+.++++++.+....+ ....|+.++++++++++|++++.++++++++++|+.+....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344577888999999999998855444 78999999999999999999999999999999999998754
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=47.53 E-value=1.2e+02 Score=25.04 Aligned_cols=23 Identities=4% Similarity=0.003 Sum_probs=19.3
Q ss_pred HHHHHHcCCCCchhhhhhhhHhh
Q 018451 289 VLSCVWFRHPLSWEQCIGSIIVF 311 (355)
Q Consensus 289 ils~~~fge~~t~~~~iG~~lv~ 311 (355)
-+|..+|++-+-+...+|+.+..
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999998854
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.84 E-value=28 Score=32.42 Aligned_cols=24 Identities=4% Similarity=-0.171 Sum_probs=14.9
Q ss_pred hhhhhhHhhhhHHhhhhhccccCC
Q 018451 303 QCIGSIIVFGALYTRSFFKKVSEK 326 (355)
Q Consensus 303 ~~iG~~lv~~Gi~~~~~~k~k~~~ 326 (355)
.+.|..+++.|+.++.+.++++++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 345666677787776666555443
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=34.44 E-value=2.6e+02 Score=25.13 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCCC--chhhhhhhhH-hhhhHHhhhhhccccCCCCCCCCCCccc
Q 018451 286 VSIVLSCVWFRHPL--SWEQCIGSII-VFGALYTRSFFKKVSEKPRPSEHPMENM 337 (355)
Q Consensus 286 ~siils~~~fge~~--t~~~~iG~~l-v~~Gi~~~~~~k~k~~~~~~~~~~~~~~ 337 (355)
.++.++...|+++. ..--.+.... .+.|..+..+.+||++++++..++||.|
T Consensus 273 lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~~~~~~~~~ 327 (332)
T 3zux_A 273 LAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRAGSE 327 (332)
T ss_dssp HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCchhhcccc
Confidence 55666667786432 1111122222 2334334344444444444444444444
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.56 E-value=93 Score=19.23 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=5.5
Q ss_pred hhHHhhhhhcccc
Q 018451 312 GALYTRSFFKKVS 324 (355)
Q Consensus 312 ~Gi~~~~~~k~k~ 324 (355)
.++.+..|.|+|+
T Consensus 27 ~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 27 LGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHhheehhh
Confidence 3444444444443
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.87 E-value=2e+02 Score=18.52 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhhhhhhhHhhhhHHhhhhh----ccccCCCCCCCCCCc
Q 018451 301 WEQCIGSIIVFGALYTRSFF----KKVSEKPRPSEHPME 335 (355)
Q Consensus 301 ~~~~iG~~lv~~Gi~~~~~~----k~k~~~~~~~~~~~~ 335 (355)
....+|..+++.-+.+..|. ||+++...+.+++.|
T Consensus 16 i~svl~GLllL~li~~~LwK~GFFkR~~~~~~e~~~~~~ 54 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGFFKRNRPPLEEDDEEGE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCCCCcchhhhccC
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.01 E-value=1e+02 Score=21.06 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred hhhhhHhhhhHHhhhhhccccCCCCCCCCCCccccccc
Q 018451 304 CIGSIIVFGALYTRSFFKKVSEKPRPSEHPMENMHNGA 341 (355)
Q Consensus 304 ~iG~~lv~~Gi~~~~~~k~k~~~~~~~~~~~~~~~~~~ 341 (355)
+++.++.+.|+.+....|-|-+..|.....++-+|.+.
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~g~ 59 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTST
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccccc
Done!