Query 018453
Match_columns 355
No_of_seqs 224 out of 2941
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.8E-29 2.7E-33 235.5 27.6 282 44-342 4-311 (491)
2 3o7q_A L-fucose-proton symport 99.9 6.3E-24 2.2E-28 198.5 23.3 230 55-338 29-289 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 2.8E-24 9.5E-29 201.6 19.3 182 50-240 26-213 (451)
4 2gfp_A EMRD, multidrug resista 99.9 7.2E-23 2.5E-27 187.7 13.1 176 56-239 4-180 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 9.2E-19 3.1E-23 166.1 26.0 144 89-233 49-195 (491)
6 2xut_A Proton/peptide symporte 99.7 7.3E-17 2.5E-21 154.3 16.1 142 91-233 51-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 1.1E-13 3.9E-18 129.2 22.7 157 71-234 271-433 (451)
8 2cfq_A Lactose permease; trans 99.5 1.9E-15 6.5E-20 140.5 2.2 146 89-236 38-189 (417)
9 2cfq_A Lactose permease; trans 99.5 3.4E-13 1.2E-17 125.2 15.5 145 92-237 257-403 (417)
10 3o7q_A L-fucose-proton symport 99.5 7.8E-13 2.7E-17 123.1 14.6 142 89-233 290-431 (438)
11 4gc0_A D-xylose-proton symport 99.3 4.5E-11 1.5E-15 112.9 18.0 150 89-238 307-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.3 4E-12 1.4E-16 120.2 9.8 143 90-234 315-471 (491)
13 2gfp_A EMRD, multidrug resista 99.1 9.2E-11 3.2E-15 106.8 6.2 128 89-220 230-362 (375)
14 2xut_A Proton/peptide symporte 98.8 8.7E-09 3E-13 98.1 6.7 139 95-233 336-501 (524)
15 2g9p_A Antimicrobial peptide l 62.6 5.7 0.0002 19.2 2.0 14 113-126 2-15 (26)
16 4dve_A Biotin transporter BIOY 25.8 1.4E+02 0.0049 23.6 5.9 25 100-124 99-123 (198)
17 3arc_T Photosystem II reaction 24.7 88 0.003 16.6 3.0 9 231-239 20-28 (32)
18 4f4c_A Multidrug resistance pr 20.8 7.5E+02 0.026 26.0 15.2 18 212-229 235-252 (1321)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=7.8e-29 Score=235.49 Aligned_cols=282 Identities=30% Similarity=0.512 Sum_probs=218.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCC-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018453 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGI-SWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122 (355)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G 122 (355)
+++.+..+.+.++++++.+.+||+.+.++..++.+.++..... ...+.+..+.|++.+++.+|.++|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667777788899999999999999998888765321110 001334567899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHH
Q 018453 123 RRRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL 184 (355)
Q Consensus 123 rr~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~ 184 (355)
||++++++.++..++.++++ ++++++.++++|++.|++.|+..+..+.+++|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------ccchhHHHHhHHHHHHHHHHHHhhcccchhHHHHhhccccCchhhhHH
Q 018453 185 ISLKEFFIVLGMVGGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRE 257 (355)
Q Consensus 185 ~~~~~~~~~~g~~~~~~i~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~ 257 (355)
.++.+.+..+|.++++.++..+... ...||+.+.+..++.++.++..+++||||+|+..++ +.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chh
Confidence 9999999999999999988776542 126888888888888888888889999999999877 557
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHHHHH
Q 018453 258 SAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQD 337 (355)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
++++.+++.+++...+ ++..+..+.. .++++... ... ....++..+.....+++++.+.+.+.+|.|.+++.
T Consensus 235 ~a~~~l~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 235 QAEGILRKIMGNTLAT---QAVQEIKHSL---DHGRKTGG-RLL-MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHTT-HHH-HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhH---HHHHHHHHHH---Hhhhhhhh-HHH-HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 7777777765432211 1111111110 01111111 111 12345677778888899999999999999999988
Q ss_pred hcccc
Q 018453 338 FLQPL 342 (355)
Q Consensus 338 ~~~~~ 342 (355)
.+.+.
T Consensus 307 ~~~~~ 311 (491)
T 4gc0_A 307 LGAST 311 (491)
T ss_dssp SSCCH
T ss_pred cCCCc
Confidence 77654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=6.3e-24 Score=198.52 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=183.4
Q ss_pred HHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 018453 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (355)
Q Consensus 55 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~ 134 (355)
+.+++..+..++.....++..|.+.++ +|++..+.+++.+++.+++.++.++.|+++||+|||+.++++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 344555666777777888888888776 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-ccc
Q 018453 135 LVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-DLV 210 (355)
Q Consensus 135 ~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-~~~ 210 (355)
+++.++. .++++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+. ...
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 888999999999999999999999999999999999999999999999999999999999999988 554
Q ss_pred cc------------------------hhHHHHhHHHHHHHHHHHHhhc--ccchhHHHHhhccccCchhhhHHHHHHHHH
Q 018453 211 AG------------------------WRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLC 264 (355)
Q Consensus 211 ~~------------------------w~~~~~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~~~~~~~~~~~~~~~~ 264 (355)
+. ||+.|++.+++.++..+..++. ||+++. .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~------------------- 238 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N------------------- 238 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C-------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c-------------------
Confidence 23 9999988777766655544443 443220 0
Q ss_pred HHhCCCCCCCchhHHHHHHHhhccccccccchhhhhhcccchhHHHHHHHHHHHHhhhhhhHHHHhHHHH-HHHh
Q 018453 265 RLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQDF 338 (355)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (355)
.. ++++++.+.+++++++++..+...+..++..+. ...+..|.|.+ +++.
T Consensus 239 ------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 239 ------HS--------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEI 289 (438)
T ss_dssp ------CC--------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHS
T ss_pred ------cc--------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcc
Confidence 00 000122345667788887776666655444443 45677888888 7776
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=2.8e-24 Score=201.61 Aligned_cols=182 Identities=15% Similarity=0.059 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 018453 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (355)
Q Consensus 50 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 129 (355)
.+.....++++.+..++......+.+|.+.++ + .+..+.+++.+++.++..+++++.|+++||+|||+.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 97 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH
Confidence 34444666777788888888888899988886 7 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018453 130 AALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205 (355)
Q Consensus 130 ~~~l~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 205 (355)
+.++.+++.++.++ +++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc-hhHHHHhHHHHHHHHHH-HHhhcccchhH
Q 018453 206 LVDLVAG-WRYMYGASTPLAVIMGM-GMWWLPASPRW 240 (355)
Q Consensus 206 l~~~~~~-w~~~~~~~~~~~~~~~~-~~~~~~esp~~ 240 (355)
+.+.. + ||+.|++.++++++..+ ..+++||+|+.
T Consensus 178 l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 178 GMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 88776 6 99999999888776544 45668888763
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=7.2e-23 Score=187.67 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=157.7
Q ss_pred HHHHHHHHhhhhhcccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018453 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (355)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 135 (355)
.+++..+..++......+.+|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+.++++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34555566677777778888888776 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 018453 136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215 (355)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~ 215 (355)
++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876 8999
Q ss_pred HHHhHHHHHHHHHH-HHhhcccchh
Q 018453 216 MYGASTPLAVIMGM-GMWWLPASPR 239 (355)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~~~~esp~ 239 (355)
.|++.+++.++..+ ..+++||+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCC
Confidence 99998888777665 4455777653
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=9.2e-19 Score=166.07 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=133.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhH
Q 018453 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (355)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 167 (355)
+|++..+.+++.+++.++..+++++.|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|++.|...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 79999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453 168 APMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (355)
Q Consensus 168 ~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~ 233 (355)
...++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 778888899999999999999999998877 8999999987777666555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.72 E-value=7.3e-17 Score=154.27 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=130.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhHHhHH
Q 018453 91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHAA 168 (355)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~ 168 (355)
++..+.+++.+++.++..++.++.|+++||+ |||+.+.++.++.+++.++.++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHhhcCCCchhHHHHH---HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453 169 PMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (355)
Q Consensus 169 ~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~ 233 (355)
..++.|++|+++|+++.+. .+.+..+|.+++|.+++.+.+.. +|++.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999999988776 8999999988887766555444
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.61 E-value=1.1e-13 Score=129.17 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=133.5
Q ss_pred cccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH-HHHHHHHhh--h
Q 018453 71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILAALLYL-VGALVTALA--P 145 (355)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~l~~-~~~~~~~~~--~ 145 (355)
.....|.+..+ .+|++..+.+++.+...++.+++.++.|++.||+ |||+.+.++.++.. ++.++..+. .
T Consensus 271 ~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T 1pw4_A 271 ILDWSPTYLKE------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344 (451)
T ss_dssp HHHHHHHHBTT------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 34455655553 2689999999999999999999999999999999 99999888877766 666666555 3
Q ss_pred hHHHHHHHHHHHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhhccccchhHHHHhHHHHH
Q 018453 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLA 224 (355)
Q Consensus 146 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~ 224 (355)
+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. ||+..|++.++++
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGS 423 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 6777888889999999988999899999999999999999999999999 9999999999999887 8999999988888
Q ss_pred HHHHHHHhhc
Q 018453 225 VIMGMGMWWL 234 (355)
Q Consensus 225 ~~~~~~~~~~ 234 (355)
+++.++.+++
T Consensus 424 ~~~~~~~~~~ 433 (451)
T 1pw4_A 424 ILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655554
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.52 E-value=1.9e-15 Score=140.46 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=98.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHhhhhHH-HHHHHHHHHHHHHhhH
Q 018453 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL---VTALAPDFI-IMVVGRFVFGIGIGLA 164 (355)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~---~~~~~~~~~-~~~~~r~l~G~~~g~~ 164 (355)
+|++..+.|++.+.+.++..++++++|+++||+|||+.++++..+..+... ...+.+... .++.++++.|++.|..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999988877654321 112222111 1233444444433333
Q ss_pred HhHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhccc
Q 018453 165 MHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA 236 (355)
Q Consensus 165 ~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 236 (355)
.+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+. +|++.|++.+++.++..+..++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHcCc
Confidence 32222333333322 3567777888788899999999999988763 7999999877765555544444443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=3.4e-13 Score=125.25 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHHHHH
Q 018453 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMY 171 (355)
Q Consensus 92 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 171 (355)
+....+++.++..++.+++.++.|+++||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888888888999999999999999999999998888888887777777787888888888888877777777889
Q ss_pred HHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh-cccc
Q 018453 172 IAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPAS 237 (355)
Q Consensus 172 ~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~es 237 (355)
+.|.+|++.||++.++ ++....+|.+++|.+++.+.+.. |++..|.+.+++++++.++.++ .||.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999999998 48888999999999999988876 7999999888887776655444 5554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=7.8e-13 Score=123.10 Aligned_cols=142 Identities=8% Similarity=-0.025 Sum_probs=119.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHhHH
Q 018453 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (355)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 168 (355)
+|.+..+.+++.+...++.+++.++.|++.||+|||+.+.++.++..++.++..+.++.+.++. -++.|++.+...+..
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~ 368 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTI 368 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999888888777765444 488899999999999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhh
Q 018453 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (355)
Q Consensus 169 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~ 233 (355)
..+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.+++.++.++..++
T Consensus 369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999866 888888877 5669999999999999988733998888766555544444333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.33 E-value=4.5e-11 Score=112.94 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=108.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHH-Hhh
Q 018453 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----PDFIIMVVGRFVFGIG-IGL 163 (355)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~r~l~G~~-~g~ 163 (355)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. .+.+..++..++...+ ..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 46666677777778888999999999999999999999998888888777665442 1122222222222222 222
Q ss_pred HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchhHHHHhHHHHHHHHHH-HHhhcccc
Q 018453 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVIMGM-GMWWLPAS 237 (355)
Q Consensus 164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-----~~w~~~~~~~~~~~~~~~~-~~~~~~es 237 (355)
..++...+.+|.+|.+.|++++++......+|+++++.+.+.+.+.. .++.+.|++.++++++..+ .++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 44667789999999999999999999999999999988876654321 1455677777777777654 45679998
Q ss_pred h
Q 018453 238 P 238 (355)
Q Consensus 238 p 238 (355)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 4
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.32 E-value=4e-12 Score=120.23 Aligned_cols=143 Identities=12% Similarity=0.031 Sum_probs=113.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHHHHHHhhh---------hHHHHHHHHH
Q 018453 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-----LAALLYLVGALVTALAP---------DFIIMVVGRF 155 (355)
Q Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~l~~~~~~~~~~~~---------~~~~~~~~r~ 155 (355)
+.+....+++.+...++..++.++.+++.||+|||+... ++.++.+++.++..+.. +.+.+.+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 444456677788888899999999999999999976544 67777777766665533 6677778889
Q ss_pred HHHHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhHHHHHHHHHHHHhhc
Q 018453 156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234 (355)
Q Consensus 156 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 234 (355)
+.|++.+...+....++.|.+|++.|++++++.+....+|..+++.+.+.+.+. ++...|++.++++++..+..+++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999999999999999998887654 57778887777777665554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.08 E-value=9.2e-11 Score=106.85 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=102.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHHHHHhh
Q 018453 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGAL--VTAL--APDFIIMVVGRFVFGIGIGL 163 (355)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~g~ 163 (355)
+|.+..+.+++.+...++.+++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..++.|++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999998833 223322 222222 2222 23667777888999999999
Q ss_pred HHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhH
Q 018453 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS 220 (355)
Q Consensus 164 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~ 220 (355)
..+....++.|..| ++||++.++.+....+|..+++.+.+.+.+.. +|+..+++.
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~ 362 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMT 362 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHHHH
Confidence 99999999999998 89999999999999999999999999887654 777776654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.75 E-value=8.7e-09 Score=98.07 Aligned_cols=139 Identities=9% Similarity=0.049 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhcc----HHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q 018453 95 EIGLITSGSLYGALIGSILAFNIA----DILGR----RRELILAALLYLVGALVTALA---------PDFIIMVVGRFVF 157 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~r~l~ 157 (355)
..+++.+...++.+++.++.+++. +|.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 345566666666667776666553 55443 355667777777777766653 2566777888999
Q ss_pred HHHHhhHHhHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cch---------hHHHHhHHHHHHHH
Q 018453 158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGW---------RYMYGASTPLAVIM 227 (355)
Q Consensus 158 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-~~w---------~~~~~~~~~~~~~~ 227 (355)
|++.+...+....++.|.+|+++||+++|+.+....+|..+++.+.+.+.+.. .+| +..|++.++++++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887632 123 33466666666665
Q ss_pred HHHHhh
Q 018453 228 GMGMWW 233 (355)
Q Consensus 228 ~~~~~~ 233 (355)
.++.++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 554444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=62.62 E-value=5.7 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.5
Q ss_pred HHHHHHHHhccHHH
Q 018453 113 LAFNIADILGRRRE 126 (355)
Q Consensus 113 ~~g~l~dr~Grr~~ 126 (355)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999875
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.75 E-value=1.4e+02 Score=23.63 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccH
Q 018453 100 TSGSLYGALIGSILAFNIADILGRR 124 (355)
Q Consensus 100 ~~~~~~~~~~~~~~~g~l~dr~Grr 124 (355)
+..|.+|+.++..+.|++.+|..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457788888999999999987543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.66 E-value=88 Score=16.64 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=5.7
Q ss_pred Hhhcccchh
Q 018453 231 MWWLPASPR 239 (355)
Q Consensus 231 ~~~~~esp~ 239 (355)
..+++|.|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 345678775
No 18
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=20.80 E-value=7.5e+02 Score=25.99 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=9.6
Q ss_pred chhHHHHhHHHHHHHHHH
Q 018453 212 GWRYMYGASTPLAVIMGM 229 (355)
Q Consensus 212 ~w~~~~~~~~~~~~~~~~ 229 (355)
+|+..+++.+++.+..++
T Consensus 235 ~~~l~lv~l~~~p~~~~~ 252 (1321)
T 4f4c_A 235 SWQLTLVMLAVTPIQALC 252 (1321)
T ss_dssp CHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788766554444333333
Done!