Query 018454
Match_columns 355
No_of_seqs 353 out of 2167
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2423 Nucleolar GTPase [Gene 100.0 2E-112 3E-117 823.4 21.2 344 5-351 5-353 (572)
2 PF08153 NGP1NT: NGP1NT (NUC09 100.0 3E-56 6.5E-61 375.5 8.6 127 41-167 1-130 (130)
3 COG1161 Predicted GTPases [Gen 100.0 5.7E-30 1.2E-34 250.0 16.6 166 162-348 1-175 (322)
4 KOG2484 GTPase [General functi 100.0 4.5E-30 9.7E-35 250.6 12.9 143 199-341 133-287 (435)
5 KOG1424 Predicted GTP-binding 100.0 1.7E-29 3.7E-34 252.8 16.7 256 71-344 41-352 (562)
6 cd01858 NGP_1 NGP-1. Autoanti 100.0 1.1E-28 2.3E-33 216.2 16.4 143 205-347 1-144 (157)
7 TIGR03596 GTPase_YlqF ribosome 99.9 2.7E-26 5.7E-31 219.5 17.9 148 196-348 5-161 (276)
8 PRK13796 GTPase YqeH; Provisio 99.9 4.7E-26 1E-30 226.0 16.8 155 161-343 35-202 (365)
9 TIGR03597 GTPase_YqeH ribosome 99.9 3.3E-26 7.2E-31 226.7 15.6 163 159-348 27-202 (360)
10 PRK09563 rbgA GTPase YlqF; Rev 99.9 9.1E-26 2E-30 217.0 18.0 147 196-347 8-163 (287)
11 cd01855 YqeH YqeH. YqeH is an 99.9 8.6E-26 1.9E-30 203.4 15.6 156 163-343 1-172 (190)
12 cd04178 Nucleostemin_like Nucl 99.9 9.8E-25 2.1E-29 195.3 13.9 134 214-347 1-159 (172)
13 cd01856 YlqF YlqF. Proteins o 99.9 7.4E-24 1.6E-28 188.3 17.5 148 196-348 3-158 (171)
14 cd01849 YlqF_related_GTPase Yl 99.9 6.1E-23 1.3E-27 179.5 15.7 133 214-348 1-143 (155)
15 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 1.3E-22 2.9E-27 174.8 14.4 120 202-343 1-120 (141)
16 cd01859 MJ1464 MJ1464. This f 99.9 4.1E-22 8.8E-27 173.8 16.4 141 202-347 1-143 (156)
17 COG1160 Predicted GTPases [Gen 99.9 4.6E-22 9.9E-27 198.5 15.4 149 200-353 71-225 (444)
18 PRK12289 GTPase RsgA; Reviewed 99.8 5.7E-19 1.2E-23 174.5 14.5 128 209-350 86-221 (352)
19 KOG2485 Conserved ATP/GTP bind 99.8 2.1E-18 4.4E-23 165.0 12.4 144 196-343 30-185 (335)
20 TIGR00157 ribosome small subun 99.8 5.5E-18 1.2E-22 159.7 13.4 119 209-339 33-153 (245)
21 PRK03003 GTP-binding protein D 99.8 6.6E-18 1.4E-22 172.9 14.9 146 201-351 106-256 (472)
22 TIGR03594 GTPase_EngA ribosome 99.7 2.4E-17 5.2E-22 165.9 16.1 146 200-350 66-216 (429)
23 PRK00093 GTP-binding protein D 99.7 3.3E-17 7.1E-22 165.4 17.0 146 201-351 69-218 (435)
24 PRK09518 bifunctional cytidyla 99.7 3.5E-17 7.7E-22 175.2 15.7 149 200-353 342-497 (712)
25 PRK12288 GTPase RsgA; Reviewed 99.7 1.5E-16 3.2E-21 157.1 14.2 119 208-339 116-238 (347)
26 cd01854 YjeQ_engC YjeQ/EngC. 99.7 2E-16 4.4E-21 152.3 13.8 120 207-338 73-193 (287)
27 PRK00098 GTPase RsgA; Reviewed 99.7 1.5E-16 3.3E-21 154.0 12.4 121 207-339 75-197 (298)
28 COG1162 Predicted GTPases [Gen 99.5 1.2E-13 2.6E-18 132.9 13.3 119 209-339 76-197 (301)
29 PRK01889 GTPase RsgA; Reviewed 99.5 2.2E-13 4.8E-18 135.1 11.9 117 209-338 109-227 (356)
30 KOG1249 Predicted GTPases [Gen 99.2 1.1E-11 2.5E-16 125.8 6.8 155 161-341 76-259 (572)
31 COG0486 ThdF Predicted GTPase 99.0 4.7E-10 1E-14 113.1 6.9 47 304-350 215-261 (454)
32 COG1160 Predicted GTPases [Gen 99.0 8E-09 1.7E-13 104.0 13.0 135 202-351 250-393 (444)
33 PF00009 GTP_EFTU: Elongation 98.9 1.1E-08 2.4E-13 91.9 11.2 101 196-299 78-187 (188)
34 COG1159 Era GTPase [General fu 98.9 1.5E-08 3.3E-13 97.2 11.8 100 200-301 73-174 (298)
35 TIGR00436 era GTP-binding prot 98.9 1.8E-08 3.8E-13 96.1 12.1 97 201-300 68-165 (270)
36 cd01894 EngA1 EngA1 subfamily. 98.8 3.3E-08 7.2E-13 84.1 11.6 93 200-297 64-156 (157)
37 KOG1191 Mitochondrial GTPase [ 98.8 3.5E-09 7.5E-14 107.1 5.6 50 304-353 266-315 (531)
38 PF10662 PduV-EutP: Ethanolami 98.8 4.1E-08 8.9E-13 85.5 9.7 91 200-295 51-142 (143)
39 cd01895 EngA2 EngA2 subfamily. 98.7 9.3E-08 2E-12 82.2 11.1 91 205-297 77-173 (174)
40 TIGR03594 GTPase_EngA ribosome 98.7 1.7E-07 3.7E-12 94.5 14.7 129 204-347 246-382 (429)
41 TIGR02528 EutP ethanolamine ut 98.7 8.7E-08 1.9E-12 81.2 10.4 88 203-295 53-141 (142)
42 cd01898 Obg Obg subfamily. Th 98.7 5.4E-08 1.2E-12 84.4 9.0 95 203-297 69-169 (170)
43 PRK00089 era GTPase Era; Revie 98.7 1.5E-07 3.3E-12 90.3 12.0 98 201-300 73-172 (292)
44 cd04171 SelB SelB subfamily. 98.7 2E-07 4.4E-12 79.9 11.4 95 201-296 63-163 (164)
45 PRK00093 GTP-binding protein D 98.7 3.4E-07 7.3E-12 92.7 14.8 128 204-347 247-382 (435)
46 PRK15494 era GTPase Era; Provi 98.7 1.4E-07 2.9E-12 93.2 11.1 97 201-300 120-217 (339)
47 PRK03003 GTP-binding protein D 98.7 3.1E-07 6.7E-12 94.5 13.7 128 207-349 288-422 (472)
48 cd04165 GTPBP1_like GTPBP1-lik 98.7 2.4E-07 5.3E-12 86.3 11.6 99 196-297 92-221 (224)
49 cd01888 eIF2_gamma eIF2-gamma 98.6 3.1E-07 6.8E-12 83.8 12.1 102 196-299 91-199 (203)
50 cd04163 Era Era subfamily. Er 98.6 3.5E-07 7.6E-12 77.6 11.5 92 204-297 74-167 (168)
51 PF03193 DUF258: Protein of un 98.6 1.1E-07 2.3E-12 84.6 8.1 67 262-339 2-68 (161)
52 COG2262 HflX GTPases [General 98.6 1.7E-07 3.8E-12 93.4 10.2 116 196-318 255-372 (411)
53 TIGR02729 Obg_CgtA Obg family 98.6 1.9E-07 4.1E-12 91.9 10.1 97 202-298 225-328 (329)
54 cd00881 GTP_translation_factor 98.6 3.6E-07 7.7E-12 80.2 10.8 94 204-299 77-187 (189)
55 PF01926 MMR_HSR1: 50S ribosom 98.6 4.1E-08 8.9E-13 81.1 4.3 36 308-343 1-36 (116)
56 cd01879 FeoB Ferrous iron tran 98.6 3.5E-07 7.5E-12 78.1 10.2 84 211-298 73-156 (158)
57 PRK12299 obgE GTPase CgtA; Rev 98.6 3.1E-07 6.7E-12 90.7 11.0 100 201-300 225-329 (335)
58 cd01890 LepA LepA subfamily. 98.6 4.8E-07 1E-11 79.4 10.7 92 204-298 82-176 (179)
59 cd01889 SelB_euk SelB subfamil 98.6 6.2E-07 1.3E-11 80.6 11.5 97 201-299 80-186 (192)
60 PRK15467 ethanolamine utilizat 98.6 5.6E-07 1.2E-11 79.0 10.7 94 201-299 53-147 (158)
61 cd01897 NOG NOG1 is a nucleola 98.5 4.1E-07 8.9E-12 78.9 9.3 84 213-297 80-166 (168)
62 COG0218 Predicted GTPase [Gene 98.5 1E-07 2.2E-12 87.1 5.2 37 305-341 23-60 (200)
63 PRK09866 hypothetical protein; 98.5 9E-07 2E-11 93.1 11.9 97 202-298 248-352 (741)
64 TIGR03156 GTP_HflX GTP-binding 98.5 7E-07 1.5E-11 88.7 10.7 92 201-297 257-350 (351)
65 TIGR00450 mnmE_trmE_thdF tRNA 98.5 2.8E-07 6.1E-12 94.2 7.9 48 304-351 201-248 (442)
66 COG0486 ThdF Predicted GTPase 98.5 4.5E-07 9.7E-12 91.8 9.1 112 182-300 262-377 (454)
67 cd01878 HflX HflX subfamily. 98.5 1.3E-06 2.8E-11 78.9 11.3 91 203-297 111-203 (204)
68 cd04164 trmE TrmE (MnmE, ThdF, 98.5 9.2E-07 2E-11 75.0 9.3 86 203-298 71-156 (157)
69 PRK12296 obgE GTPase CgtA; Rev 98.5 1.3E-06 2.8E-11 90.4 11.8 99 201-300 225-341 (500)
70 cd00880 Era_like Era (E. coli 98.5 1.5E-06 3.4E-11 72.4 10.3 92 204-297 67-162 (163)
71 PRK09518 bifunctional cytidyla 98.4 2.4E-06 5.1E-11 92.3 14.0 125 207-347 527-659 (712)
72 cd01881 Obg_like The Obg-like 98.4 7E-07 1.5E-11 77.6 7.9 94 203-296 65-174 (176)
73 PRK05291 trmE tRNA modificatio 98.4 4.5E-07 9.8E-12 92.8 7.2 48 304-351 213-260 (449)
74 cd04156 ARLTS1 ARLTS1 subfamil 98.4 8.3E-07 1.8E-11 76.3 7.7 89 208-296 63-159 (160)
75 cd04157 Arl6 Arl6 subfamily. 98.4 1.3E-06 2.8E-11 75.0 8.8 88 208-295 64-160 (162)
76 cd01893 Miro1 Miro1 subfamily. 98.4 1.4E-06 3E-11 76.1 8.9 92 207-298 65-163 (166)
77 cd01862 Rab7 Rab7 subfamily. 98.4 2.3E-06 5E-11 74.2 10.0 92 207-298 67-166 (172)
78 cd01861 Rab6 Rab6 subfamily. 98.4 1.7E-06 3.7E-11 74.3 9.0 91 205-297 65-160 (161)
79 PRK12298 obgE GTPase CgtA; Rev 98.4 1.9E-06 4.2E-11 86.7 10.7 99 202-300 227-334 (390)
80 cd04124 RabL2 RabL2 subfamily. 98.4 2.5E-06 5.4E-11 74.2 10.0 89 208-298 68-157 (161)
81 PRK12298 obgE GTPase CgtA; Rev 98.4 2.9E-07 6.3E-12 92.7 4.3 44 307-351 160-203 (390)
82 cd04151 Arl1 Arl1 subfamily. 98.4 1.7E-06 3.7E-11 74.7 8.4 88 208-295 62-156 (158)
83 PF02421 FeoB_N: Ferrous iron 98.3 5.8E-07 1.3E-11 79.5 5.1 81 210-294 76-156 (156)
84 cd04160 Arfrp1 Arfrp1 subfamil 98.3 1.8E-06 3.9E-11 74.8 8.0 87 207-295 68-165 (167)
85 PRK00454 engB GTP-binding prot 98.3 5.9E-06 1.3E-10 73.6 11.4 91 206-299 100-194 (196)
86 cd04149 Arf6 Arf6 subfamily. 98.3 2E-06 4.3E-11 75.8 8.2 86 208-295 72-166 (168)
87 smart00177 ARF ARF-like small 98.3 2.5E-06 5.5E-11 75.6 8.9 91 208-298 76-173 (175)
88 cd04101 RabL4 RabL4 (Rab-like4 98.3 2.7E-06 5.9E-11 73.4 8.7 89 207-297 70-162 (164)
89 PRK04213 GTP-binding protein; 98.3 5.6E-06 1.2E-10 74.5 11.1 88 209-299 87-192 (201)
90 smart00178 SAR Sar1p-like memb 98.3 2.1E-06 4.6E-11 76.7 8.3 89 208-296 80-182 (184)
91 cd00154 Rab Rab family. Rab G 98.3 3.8E-06 8.3E-11 70.7 9.2 89 205-295 65-158 (159)
92 cd04150 Arf1_5_like Arf1-Arf5- 98.3 2.9E-06 6.2E-11 74.0 8.7 88 208-295 63-157 (159)
93 smart00175 RAB Rab subfamily o 98.3 5.2E-06 1.1E-10 71.2 10.0 93 204-298 64-161 (164)
94 cd04154 Arl2 Arl2 subfamily. 98.3 2.8E-06 6E-11 74.7 8.2 88 208-295 77-171 (173)
95 cd04112 Rab26 Rab26 subfamily. 98.3 5.4E-06 1.2E-10 74.4 10.1 95 206-300 67-164 (191)
96 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 9.4E-06 2E-10 70.1 11.2 88 209-298 70-165 (168)
97 cd04114 Rab30 Rab30 subfamily. 98.3 6E-06 1.3E-10 71.6 9.8 94 204-297 71-167 (169)
98 TIGR03156 GTP_HflX GTP-binding 98.3 1.6E-06 3.5E-11 86.1 6.9 45 305-350 188-232 (351)
99 PTZ00327 eukaryotic translatio 98.3 7.7E-06 1.7E-10 84.1 12.0 102 196-300 125-234 (460)
100 cd04109 Rab28 Rab28 subfamily. 98.3 4.1E-06 8.8E-11 76.9 9.0 91 209-299 70-166 (215)
101 cd01884 EF_Tu EF-Tu subfamily. 98.3 6.5E-06 1.4E-10 75.1 10.3 89 196-287 73-171 (195)
102 PRK10512 selenocysteinyl-tRNA- 98.3 7E-06 1.5E-10 87.2 12.0 102 196-300 59-167 (614)
103 PTZ00099 rab6; Provisional 98.3 5.4E-06 1.2E-10 74.3 9.5 92 208-300 48-143 (176)
104 cd04158 ARD1 ARD1 subfamily. 98.3 3.2E-06 6.8E-11 74.2 7.9 92 208-299 62-161 (169)
105 cd00877 Ran Ran (Ras-related n 98.3 3.9E-06 8.4E-11 73.7 8.4 89 209-298 69-158 (166)
106 TIGR03680 eif2g_arch translati 98.3 9.1E-06 2E-10 82.1 12.2 102 196-299 88-196 (406)
107 COG1084 Predicted GTPase [Gene 98.3 1.7E-06 3.7E-11 84.2 6.5 48 305-353 167-214 (346)
108 PRK15494 era GTPase Era; Provi 98.2 9.7E-07 2.1E-11 87.2 5.0 46 305-350 51-96 (339)
109 PRK11058 GTPase HflX; Provisio 98.2 6E-06 1.3E-10 84.1 10.7 95 202-299 266-362 (426)
110 PRK05291 trmE tRNA modificatio 98.2 3.7E-06 8.1E-11 86.1 9.3 86 203-299 285-370 (449)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 3.9E-06 8.5E-11 74.1 8.2 88 208-295 78-172 (174)
112 PTZ00258 GTP-binding protein; 98.2 9.8E-07 2.1E-11 88.7 4.9 44 304-348 19-62 (390)
113 PRK13768 GTPase; Provisional 98.2 5.4E-06 1.2E-10 78.7 9.6 98 202-299 116-247 (253)
114 PRK04000 translation initiatio 98.2 8.7E-06 1.9E-10 82.5 11.7 103 196-300 93-202 (411)
115 smart00174 RHO Rho (Ras homolo 98.2 4E-06 8.7E-11 73.2 8.1 90 209-298 66-171 (174)
116 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 5.8E-06 1.3E-10 73.8 9.3 90 209-298 72-169 (183)
117 cd01866 Rab2 Rab2 subfamily. 98.2 8.6E-06 1.9E-10 71.2 10.1 92 205-298 69-165 (168)
118 KOG1423 Ras-like GTPase ERA [C 98.2 1.1E-06 2.3E-11 85.0 4.6 46 303-348 69-114 (379)
119 PRK12299 obgE GTPase CgtA; Rev 98.2 1E-06 2.3E-11 87.0 4.8 44 307-351 159-202 (335)
120 cd04127 Rab27A Rab27a subfamil 98.2 7.7E-06 1.7E-10 71.9 9.9 91 206-298 80-176 (180)
121 cd04128 Spg1 Spg1p. Spg1p (se 98.2 5.4E-06 1.2E-10 74.3 9.0 91 208-298 68-165 (182)
122 cd01891 TypA_BipA TypA (tyrosi 98.2 7.8E-06 1.7E-10 73.5 10.0 86 202-289 78-172 (194)
123 PRK12297 obgE GTPase CgtA; Rev 98.2 5.4E-06 1.2E-10 84.4 9.9 97 201-300 225-328 (424)
124 cd04119 RJL RJL (RabJ-Like) su 98.2 8.6E-06 1.9E-10 69.9 9.7 87 208-297 68-165 (168)
125 cd04118 Rab24 Rab24 subfamily. 98.2 5.7E-06 1.2E-10 73.9 8.8 90 209-298 70-165 (193)
126 cd04110 Rab35 Rab35 subfamily. 98.2 7.8E-06 1.7E-10 74.0 9.8 90 207-298 73-166 (199)
127 cd04142 RRP22 RRP22 subfamily. 98.2 9.3E-06 2E-10 74.0 10.3 93 206-298 74-173 (198)
128 cd01874 Cdc42 Cdc42 subfamily. 98.2 4.1E-06 8.9E-11 74.4 7.7 89 209-297 69-173 (175)
129 TIGR00475 selB selenocysteine- 98.2 1E-05 2.2E-10 85.4 12.0 102 196-300 58-167 (581)
130 cd04106 Rab23_lke Rab23-like s 98.2 8.5E-06 1.8E-10 70.0 9.4 88 207-296 69-160 (162)
131 cd00878 Arf_Arl Arf (ADP-ribos 98.2 6.5E-06 1.4E-10 70.7 8.6 88 208-295 62-156 (158)
132 TIGR03598 GTPase_YsxC ribosome 98.2 7E-06 1.5E-10 72.9 9.1 77 210-288 98-179 (179)
133 cd01864 Rab19 Rab19 subfamily. 98.2 1.2E-05 2.5E-10 69.9 10.1 92 206-297 69-164 (165)
134 cd04138 H_N_K_Ras_like H-Ras/N 98.2 7E-06 1.5E-10 70.0 8.6 87 209-297 69-160 (162)
135 cd01876 YihA_EngB The YihA (En 98.2 2E-05 4.4E-10 67.0 11.3 92 204-297 73-169 (170)
136 cd00879 Sar1 Sar1 subfamily. 98.2 6.6E-06 1.4E-10 73.2 8.5 90 208-297 82-189 (190)
137 cd04145 M_R_Ras_like M-Ras/R-R 98.2 6.1E-06 1.3E-10 70.9 8.0 88 208-297 69-162 (164)
138 cd04121 Rab40 Rab40 subfamily. 98.2 1.2E-05 2.6E-10 72.9 10.2 92 208-299 74-167 (189)
139 cd04136 Rap_like Rap-like subf 98.2 6.7E-06 1.4E-10 70.6 8.1 89 209-297 69-161 (163)
140 cd01865 Rab3 Rab3 subfamily. 98.2 1.2E-05 2.6E-10 70.0 9.8 90 207-298 68-162 (165)
141 cd04140 ARHI_like ARHI subfami 98.2 6.5E-06 1.4E-10 71.7 8.0 89 209-297 69-163 (165)
142 PRK11058 GTPase HflX; Provisio 98.2 2.2E-06 4.8E-11 87.3 5.7 45 307-352 198-242 (426)
143 cd01892 Miro2 Miro2 subfamily. 98.2 6.8E-06 1.5E-10 72.4 8.1 88 209-298 74-165 (169)
144 cd04132 Rho4_like Rho4-like su 98.2 1.1E-05 2.4E-10 71.6 9.4 91 209-299 69-167 (187)
145 cd04122 Rab14 Rab14 subfamily. 98.2 1.5E-05 3.3E-10 69.3 10.1 88 207-296 69-161 (166)
146 cd01863 Rab18 Rab18 subfamily. 98.2 1.2E-05 2.6E-10 69.2 9.2 88 207-296 67-159 (161)
147 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 1.2E-05 2.7E-10 69.7 9.3 90 207-298 69-163 (166)
148 PLN00223 ADP-ribosylation fact 98.2 1.1E-05 2.3E-10 72.3 9.1 90 209-298 81-177 (181)
149 PTZ00133 ADP-ribosylation fact 98.2 1.1E-05 2.3E-10 72.3 9.1 92 208-299 80-178 (182)
150 COG0218 Predicted GTPase [Gene 98.1 2.3E-05 5E-10 71.7 11.3 87 211-299 105-197 (200)
151 cd01868 Rab11_like Rab11-like. 98.1 1.6E-05 3.5E-10 68.7 9.8 88 208-297 71-163 (165)
152 cd01873 RhoBTB RhoBTB subfamil 98.1 8.1E-06 1.8E-10 74.3 8.3 88 209-296 84-193 (195)
153 cd04159 Arl10_like Arl10-like 98.1 1E-05 2.3E-10 68.2 8.3 90 207-296 62-158 (159)
154 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 1.3E-05 2.9E-10 72.4 9.4 90 208-299 69-168 (201)
155 cd01867 Rab8_Rab10_Rab13_like 98.1 1.9E-05 4.1E-10 68.9 10.0 90 207-298 70-164 (167)
156 smart00173 RAS Ras subfamily o 98.1 1.3E-05 2.8E-10 69.1 8.9 90 209-298 68-161 (164)
157 cd04123 Rab21 Rab21 subfamily. 98.1 1.9E-05 4E-10 67.4 9.7 87 209-297 69-160 (162)
158 cd01860 Rab5_related Rab5-rela 98.1 1.7E-05 3.7E-10 68.2 9.5 90 208-297 69-161 (163)
159 cd00157 Rho Rho (Ras homology) 98.1 7.3E-06 1.6E-10 70.9 7.2 88 209-296 68-170 (171)
160 cd01871 Rac1_like Rac1-like su 98.1 9.7E-06 2.1E-10 71.9 7.9 88 209-296 69-172 (174)
161 cd04176 Rap2 Rap2 subgroup. T 98.1 1.1E-05 2.3E-10 69.7 7.4 88 209-296 69-160 (163)
162 COG4917 EutP Ethanolamine util 98.1 2.2E-05 4.8E-10 67.0 9.0 93 200-297 52-144 (148)
163 cd04120 Rab12 Rab12 subfamily. 98.1 2.1E-05 4.6E-10 72.1 9.7 91 208-298 68-162 (202)
164 cd04146 RERG_RasL11_like RERG/ 98.1 1E-05 2.2E-10 70.2 7.2 92 207-298 66-163 (165)
165 cd04175 Rap1 Rap1 subgroup. T 98.1 1.4E-05 2.9E-10 69.2 8.0 89 209-297 69-161 (164)
166 cd04133 Rop_like Rop subfamily 98.1 1.5E-05 3.2E-10 71.5 8.4 90 209-298 69-172 (176)
167 cd04139 RalA_RalB RalA/RalB su 98.1 2.4E-05 5.2E-10 66.9 9.4 90 208-298 67-161 (164)
168 PRK05433 GTP-binding protein L 98.1 2.4E-05 5.1E-10 83.0 11.2 96 202-300 87-185 (600)
169 cd01870 RhoA_like RhoA-like su 98.1 1.8E-05 4E-10 69.0 8.7 89 209-297 69-173 (175)
170 cd04143 Rhes_like Rhes_like su 98.1 2.3E-05 5E-10 74.1 9.9 112 209-321 68-197 (247)
171 TIGR01393 lepA GTP-binding pro 98.1 2.5E-05 5.4E-10 82.8 11.1 96 201-300 82-181 (595)
172 PRK12297 obgE GTPase CgtA; Rev 98.1 4.3E-06 9.4E-11 85.0 5.0 43 307-350 159-201 (424)
173 cd04147 Ras_dva Ras-dva subfam 98.0 1.8E-05 4E-10 71.4 8.6 91 209-299 67-163 (198)
174 cd04113 Rab4 Rab4 subfamily. 98.0 2.8E-05 6E-10 67.0 9.3 88 207-296 67-159 (161)
175 cd04108 Rab36_Rab34 Rab34/Rab3 98.0 3.4E-05 7.3E-10 68.1 10.0 90 208-299 68-165 (170)
176 smart00176 RAN Ran (Ras-relate 98.0 2.4E-05 5.3E-10 71.6 9.4 90 208-298 63-153 (200)
177 PRK12296 obgE GTPase CgtA; Rev 98.0 4.2E-06 9.1E-11 86.6 4.8 45 306-351 159-203 (500)
178 cd04130 Wrch_1 Wrch-1 subfamil 98.0 1.4E-05 3E-10 70.3 7.4 87 209-295 68-170 (173)
179 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.0 1.8E-05 4E-10 74.2 8.7 90 209-298 81-187 (232)
180 cd00876 Ras Ras family. The R 98.0 2.7E-05 5.7E-10 66.3 8.9 90 207-296 65-158 (160)
181 cd00882 Ras_like_GTPase Ras-li 98.0 2E-05 4.3E-10 64.6 7.8 89 207-295 63-156 (157)
182 PLN03071 GTP-binding nuclear p 98.0 1.5E-05 3.2E-10 73.7 7.7 89 209-298 82-171 (219)
183 cd04103 Centaurin_gamma Centau 98.0 1.7E-05 3.7E-10 69.4 7.7 88 209-296 62-156 (158)
184 cd04134 Rho3 Rho3 subfamily. 98.0 1.9E-05 4.2E-10 70.7 8.3 90 209-298 68-173 (189)
185 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 2.7E-05 5.9E-10 68.8 9.1 90 209-298 70-163 (172)
186 PF00025 Arf: ADP-ribosylation 98.0 1.3E-05 2.7E-10 71.5 6.9 89 209-297 78-174 (175)
187 cd01875 RhoG RhoG subfamily. 98.0 2E-05 4.2E-10 71.0 8.2 90 209-298 71-176 (191)
188 cd04144 Ras2 Ras2 subfamily. 98.0 2.9E-05 6.3E-10 69.6 9.2 92 208-299 66-163 (190)
189 cd01883 EF1_alpha Eukaryotic e 98.0 3.6E-05 7.7E-10 71.1 10.0 87 201-288 89-194 (219)
190 cd04131 Rnd Rnd subfamily. Th 98.0 2.3E-05 5E-10 70.1 8.3 89 209-297 69-174 (178)
191 cd04135 Tc10 TC10 subfamily. 98.0 2.1E-05 4.6E-10 68.6 7.9 88 209-296 68-171 (174)
192 cd04148 RGK RGK subfamily. Th 98.0 2.3E-05 5E-10 72.5 8.4 90 212-301 72-165 (221)
193 cd04125 RabA_like RabA-like su 98.0 4.6E-05 9.9E-10 67.9 10.0 91 207-299 67-162 (188)
194 cd01853 Toc34_like Toc34-like 98.0 1.6E-05 3.4E-10 75.5 7.3 38 304-341 29-66 (249)
195 cd04126 Rab20 Rab20 subfamily. 98.0 2.7E-05 5.8E-10 72.5 8.7 89 209-299 64-190 (220)
196 PTZ00369 Ras-like protein; Pro 98.0 2.8E-05 6.1E-10 69.6 8.4 91 209-299 73-167 (189)
197 cd04111 Rab39 Rab39 subfamily. 98.0 3.2E-05 7E-10 71.0 8.8 92 208-301 71-168 (211)
198 cd04166 CysN_ATPS CysN_ATPS su 98.0 4.1E-05 8.8E-10 70.1 9.4 87 202-289 90-184 (208)
199 TIGR02729 Obg_CgtA Obg family 98.0 6.2E-06 1.3E-10 81.3 4.3 44 307-351 158-201 (329)
200 COG0536 Obg Predicted GTPase [ 98.0 5E-05 1.1E-09 74.6 10.2 97 204-300 229-334 (369)
201 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.0 2.9E-05 6.3E-10 69.8 8.0 89 209-297 73-178 (182)
202 cd04161 Arl2l1_Arl13_like Arl2 97.9 5.5E-05 1.2E-09 66.4 9.5 87 207-295 61-165 (167)
203 TIGR00991 3a0901s02IAP34 GTP-b 97.9 2E-05 4.3E-10 77.0 7.2 52 288-341 22-73 (313)
204 cd04155 Arl3 Arl3 subfamily. 97.9 4.5E-05 9.7E-10 66.4 8.7 89 207-295 76-171 (173)
205 PRK12736 elongation factor Tu; 97.9 7.9E-05 1.7E-09 75.1 11.6 101 196-299 83-201 (394)
206 TIGR00231 small_GTP small GTP- 97.9 2E-05 4.3E-10 65.7 5.9 89 204-295 72-160 (161)
207 PLN03118 Rab family protein; P 97.9 6.7E-05 1.5E-09 68.4 9.8 93 207-299 80-177 (211)
208 KOG1489 Predicted GTP-binding 97.9 4.1E-05 8.9E-10 74.5 8.5 94 202-297 264-365 (366)
209 PRK00454 engB GTP-binding prot 97.9 1.5E-05 3.3E-10 71.0 5.2 39 304-342 22-61 (196)
210 cd04116 Rab9 Rab9 subfamily. 97.9 9.9E-05 2.2E-09 64.2 10.3 89 208-296 73-168 (170)
211 PRK00049 elongation factor Tu; 97.9 8.4E-05 1.8E-09 75.0 10.9 101 196-299 83-203 (396)
212 CHL00071 tufA elongation facto 97.9 8.5E-05 1.8E-09 75.2 11.0 100 196-298 83-210 (409)
213 PLN03110 Rab GTPase; Provision 97.9 8.4E-05 1.8E-09 68.4 10.0 92 206-299 78-174 (216)
214 TIGR03598 GTPase_YsxC ribosome 97.9 1.3E-05 2.8E-10 71.2 4.4 40 304-343 16-56 (179)
215 cd04162 Arl9_Arfrp2_like Arl9/ 97.9 3E-05 6.5E-10 67.9 6.5 86 208-295 63-162 (164)
216 cd04117 Rab15 Rab15 subfamily. 97.9 9.8E-05 2.1E-09 64.2 9.7 87 208-296 68-159 (161)
217 TIGR00437 feoB ferrous iron tr 97.9 6E-05 1.3E-09 79.8 9.9 85 210-298 70-154 (591)
218 PRK12317 elongation factor 1-a 97.9 7.4E-05 1.6E-09 75.8 10.1 88 201-289 96-195 (425)
219 KOG1423 Ras-like GTPase ERA [C 97.9 2.9E-05 6.2E-10 75.3 6.6 97 202-299 145-271 (379)
220 TIGR01394 TypA_BipA GTP-bindin 97.8 8.7E-05 1.9E-09 78.6 10.6 103 196-301 72-193 (594)
221 cd04115 Rab33B_Rab33A Rab33B/R 97.8 0.00013 2.8E-09 63.8 10.0 89 208-296 71-166 (170)
222 TIGR00450 mnmE_trmE_thdF tRNA 97.8 9E-05 1.9E-09 75.9 10.0 87 204-299 274-360 (442)
223 PLN03108 Rab family protein; P 97.8 0.00013 2.7E-09 66.9 9.9 89 207-297 73-166 (210)
224 CHL00189 infB translation init 97.8 0.00013 2.8E-09 78.9 11.3 100 196-298 303-409 (742)
225 KOG0462 Elongation factor-type 97.8 5.5E-05 1.2E-09 78.0 7.9 96 201-299 137-235 (650)
226 PRK09554 feoB ferrous iron tra 97.8 0.00011 2.3E-09 80.2 10.6 86 209-298 82-167 (772)
227 cd04129 Rho2 Rho2 subfamily. 97.8 7.3E-05 1.6E-09 66.8 7.7 90 209-298 69-172 (187)
228 PRK05124 cysN sulfate adenylyl 97.8 0.00017 3.7E-09 74.5 11.2 88 201-289 119-215 (474)
229 cd04167 Snu114p Snu114p subfam 97.8 7E-05 1.5E-09 68.6 7.5 53 202-256 84-136 (213)
230 TIGR02034 CysN sulfate adenyly 97.8 0.0002 4.3E-09 72.5 11.3 88 201-289 92-187 (406)
231 TIGR00483 EF-1_alpha translati 97.8 0.00016 3.5E-09 73.4 10.8 93 196-289 93-197 (426)
232 TIGR00491 aIF-2 translation in 97.8 0.00024 5.1E-09 75.3 12.3 88 209-298 89-215 (590)
233 PLN03127 Elongation factor Tu; 97.8 0.00017 3.6E-09 74.1 10.7 101 196-299 132-252 (447)
234 PRK05306 infB translation init 97.7 0.00011 2.5E-09 79.9 9.8 88 207-297 355-450 (787)
235 PRK12735 elongation factor Tu; 97.7 0.00025 5.4E-09 71.5 11.2 101 196-299 83-203 (396)
236 KOG1489 Predicted GTP-binding 97.7 2E-05 4.3E-10 76.7 2.9 36 306-342 196-231 (366)
237 cd01896 DRG The developmentall 97.7 0.00034 7.3E-09 65.5 11.2 49 244-298 177-225 (233)
238 PRK14845 translation initiatio 97.7 0.00024 5.3E-09 79.3 11.7 90 208-299 545-673 (1049)
239 COG1163 DRG Predicted GTPase [ 97.7 3.4E-05 7.5E-10 75.2 4.4 47 306-352 63-118 (365)
240 TIGR00487 IF-2 translation ini 97.7 0.00018 3.9E-09 76.2 10.2 87 208-296 154-247 (587)
241 KOG0075 GTP-binding ADP-ribosy 97.7 0.00045 9.7E-09 60.6 10.7 97 200-299 79-182 (186)
242 TIGR00485 EF-Tu translation el 97.7 0.00028 6E-09 71.1 10.6 100 196-298 83-200 (394)
243 PRK05506 bifunctional sulfate 97.7 0.00029 6.3E-09 75.2 11.1 96 202-298 117-232 (632)
244 cd01878 HflX HflX subfamily. 97.7 0.00011 2.3E-09 66.4 6.7 36 305-341 40-75 (204)
245 COG0536 Obg Predicted GTPase [ 97.6 3.1E-05 6.7E-10 76.0 3.0 44 307-351 160-203 (369)
246 KOG1490 GTP-binding protein CR 97.6 3.4E-05 7.4E-10 78.9 3.3 49 303-352 165-213 (620)
247 COG2229 Predicted GTPase [Gene 97.6 0.00048 1.1E-08 62.2 10.2 99 195-296 75-175 (187)
248 KOG0078 GTP-binding protein SE 97.6 0.00032 6.8E-09 64.6 8.9 97 201-299 73-174 (207)
249 COG0532 InfB Translation initi 97.6 0.0004 8.6E-09 71.6 10.3 99 196-298 63-169 (509)
250 PRK10218 GTP-binding protein; 97.6 0.00039 8.4E-09 73.9 10.5 98 202-301 81-197 (607)
251 PRK04004 translation initiatio 97.6 0.00064 1.4E-08 72.0 11.9 87 208-296 90-215 (586)
252 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.6 0.00028 6.1E-09 65.8 8.2 90 209-298 69-175 (222)
253 KOG1491 Predicted GTP-binding 97.6 5.6E-05 1.2E-09 74.1 3.6 37 305-342 19-55 (391)
254 cd04155 Arl3 Arl3 subfamily. 97.6 0.00011 2.4E-09 63.9 5.2 48 291-341 2-49 (173)
255 PLN03126 Elongation factor Tu; 97.5 0.001 2.2E-08 69.0 12.6 87 196-285 152-248 (478)
256 cd04137 RheB Rheb (Ras Homolog 97.5 0.00038 8.1E-09 61.2 8.2 91 209-299 69-163 (180)
257 cd01886 EF-G Elongation factor 97.5 0.0004 8.6E-09 66.6 8.6 54 202-257 77-130 (270)
258 cd04177 RSR1 RSR1 subgroup. R 97.5 0.00049 1.1E-08 60.0 8.5 88 209-296 69-161 (168)
259 PRK12739 elongation factor G; 97.5 0.00059 1.3E-08 73.6 10.7 60 196-258 81-140 (691)
260 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.5 0.00093 2E-08 61.1 9.7 102 196-300 79-186 (221)
261 TIGR00993 3a0901s04IAP86 chlor 97.4 0.00016 3.4E-09 76.9 5.2 38 306-343 118-156 (763)
262 PF00071 Ras: Ras family; Int 97.4 0.00038 8.3E-09 59.8 6.7 89 208-296 67-158 (162)
263 cd04168 TetM_like Tet(M)-like 97.4 0.0011 2.3E-08 62.4 9.9 54 202-257 77-130 (237)
264 COG3276 SelB Selenocysteine-sp 97.4 0.0019 4.2E-08 65.4 12.2 96 202-298 63-161 (447)
265 KOG1191 Mitochondrial GTPase [ 97.4 0.00034 7.4E-09 71.5 6.9 122 177-299 308-450 (531)
266 cd01885 EF2 EF2 (for archaea a 97.4 0.00054 1.2E-08 63.9 7.7 53 202-256 86-138 (222)
267 smart00178 SAR Sar1p-like memb 97.4 0.00031 6.7E-09 62.8 5.8 38 304-341 15-52 (184)
268 PRK00741 prfC peptide chain re 97.4 0.0011 2.3E-08 69.6 10.6 54 202-257 92-145 (526)
269 cd01882 BMS1 Bms1. Bms1 is an 97.4 0.00085 1.8E-08 62.4 8.7 80 204-285 95-182 (225)
270 PTZ00141 elongation factor 1- 97.3 0.0016 3.5E-08 66.8 11.0 99 196-297 93-223 (446)
271 COG1163 DRG Predicted GTPase [ 97.3 0.00095 2.1E-08 65.4 8.6 50 244-299 240-289 (365)
272 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.3 0.00045 9.7E-09 60.9 5.4 37 305-341 14-50 (174)
273 PRK09435 membrane ATPase/prote 97.2 0.0011 2.3E-08 65.7 8.4 85 209-300 166-261 (332)
274 KOG0092 GTPase Rab5/YPT51 and 97.2 0.00086 1.9E-08 61.0 6.6 91 209-301 74-169 (200)
275 TIGR00503 prfC peptide chain r 97.2 0.0025 5.5E-08 66.7 11.1 58 196-256 88-145 (527)
276 COG5257 GCD11 Translation init 97.2 0.0018 4E-08 63.4 9.2 92 208-300 105-203 (415)
277 cd04154 Arl2 Arl2 subfamily. 97.2 0.00049 1.1E-08 60.3 4.7 37 305-341 13-49 (173)
278 KOG1145 Mitochondrial translat 97.2 0.002 4.4E-08 66.8 9.7 88 209-299 221-316 (683)
279 KOG0084 GTPase Rab1/YPT1, smal 97.1 0.0025 5.5E-08 58.2 9.0 98 200-299 69-172 (205)
280 PTZ00132 GTP-binding nuclear p 97.1 0.0028 6E-08 57.9 9.4 106 209-322 78-191 (215)
281 PF05049 IIGP: Interferon-indu 97.1 0.00073 1.6E-08 67.7 5.7 42 286-328 16-57 (376)
282 PLN03118 Rab family protein; P 97.1 0.00081 1.8E-08 61.3 5.6 37 305-341 13-49 (211)
283 PF08477 Miro: Miro-like prote 97.1 0.00079 1.7E-08 55.0 4.9 25 308-332 1-25 (119)
284 TIGR02528 EutP ethanolamine ut 97.1 0.00034 7.3E-09 59.1 2.8 24 308-331 2-25 (142)
285 COG0481 LepA Membrane GTPase L 97.1 0.0014 3.1E-08 67.0 7.6 94 204-300 91-187 (603)
286 cd04149 Arf6 Arf6 subfamily. 97.1 0.0007 1.5E-08 59.6 4.8 37 305-341 8-44 (168)
287 KOG0072 GTP-binding ADP-ribosy 97.1 0.0027 5.8E-08 55.6 8.1 96 200-299 76-179 (182)
288 PLN00043 elongation factor 1-a 97.1 0.0037 7.9E-08 64.3 10.4 101 196-297 93-223 (447)
289 PRK12740 elongation factor G; 97.0 0.0027 5.8E-08 68.2 9.7 54 202-257 73-126 (668)
290 KOG1144 Translation initiation 97.0 0.003 6.4E-08 67.5 9.4 89 209-299 560-687 (1064)
291 TIGR00101 ureG urease accessor 97.0 0.0016 3.4E-08 59.7 6.5 78 213-298 113-195 (199)
292 PRK00007 elongation factor G; 97.0 0.0026 5.7E-08 68.7 8.8 71 196-270 83-153 (693)
293 cd00879 Sar1 Sar1 subfamily. 97.0 0.0007 1.5E-08 60.1 3.7 35 305-339 18-52 (190)
294 PTZ00133 ADP-ribosylation fact 97.0 0.0017 3.6E-08 58.0 6.1 37 304-340 15-51 (182)
295 cd04104 p47_IIGP_like p47 (47- 96.9 0.0059 1.3E-07 55.3 9.7 87 210-300 78-185 (197)
296 COG0370 FeoB Fe2+ transport sy 96.9 0.0015 3.2E-08 69.4 6.3 85 211-299 80-164 (653)
297 TIGR00073 hypB hydrogenase acc 96.9 0.004 8.6E-08 57.0 8.4 78 214-297 125-205 (207)
298 COG1217 TypA Predicted membran 96.9 0.007 1.5E-07 61.9 10.4 103 196-301 76-197 (603)
299 PRK13351 elongation factor G; 96.9 0.006 1.3E-07 65.8 10.6 54 202-257 86-139 (687)
300 COG2262 HflX GTPases [General 96.8 0.00068 1.5E-08 68.1 2.6 28 305-332 191-218 (411)
301 cd04170 EF-G_bact Elongation f 96.8 0.0023 5E-08 60.8 6.2 56 201-258 76-131 (268)
302 TIGR00484 EF-G translation elo 96.8 0.0035 7.5E-08 67.7 8.0 53 204-258 90-142 (689)
303 PRK09866 hypothetical protein; 96.8 0.0025 5.3E-08 67.8 6.4 36 306-341 69-104 (741)
304 KOG1249 Predicted GTPases [Gen 96.7 0.002 4.3E-08 66.6 5.0 93 244-341 244-349 (572)
305 KOG0073 GTP-binding ADP-ribosy 96.7 0.0097 2.1E-07 53.1 8.6 95 200-297 74-176 (185)
306 COG3596 Predicted GTPase [Gene 96.7 0.0013 2.9E-08 63.1 3.3 36 303-338 36-71 (296)
307 PRK05506 bifunctional sulfate 96.6 0.0014 3E-08 70.1 3.5 46 296-341 14-69 (632)
308 COG5256 TEF1 Translation elong 96.6 0.012 2.6E-07 59.3 9.5 85 200-287 96-199 (428)
309 PRK10463 hydrogenase nickel in 96.6 0.0043 9.3E-08 60.3 6.2 53 244-296 231-286 (290)
310 smart00053 DYNc Dynamin, GTPas 96.5 0.011 2.3E-07 56.0 8.4 67 201-271 150-218 (240)
311 cd04105 SR_beta Signal recogni 96.5 0.0071 1.5E-07 55.2 6.9 57 202-259 61-125 (203)
312 COG2895 CysN GTPases - Sulfate 96.5 0.0086 1.9E-07 59.5 7.7 91 206-297 103-213 (431)
313 PLN03110 Rab GTPase; Provision 96.5 0.0052 1.1E-07 56.5 5.9 36 305-340 11-47 (216)
314 KOG0088 GTPase Rab21, small G 96.5 0.007 1.5E-07 53.8 6.2 91 210-302 83-178 (218)
315 PF00025 Arf: ADP-ribosylation 96.5 0.0066 1.4E-07 53.9 6.2 38 304-341 12-49 (175)
316 PF06858 NOG1: Nucleolar GTP-b 96.4 0.0077 1.7E-07 44.6 5.3 42 213-254 14-58 (58)
317 KOG0093 GTPase Rab3, small G p 96.4 0.0084 1.8E-07 52.8 6.3 89 208-298 89-182 (193)
318 PLN00223 ADP-ribosylation fact 96.4 0.0045 9.7E-08 55.3 4.8 38 304-341 15-52 (181)
319 cd04169 RF3 RF3 subfamily. Pe 96.4 0.016 3.6E-07 55.4 8.8 55 202-258 84-138 (267)
320 smart00177 ARF ARF-like small 96.3 0.0054 1.2E-07 54.2 4.7 35 305-339 12-46 (175)
321 TIGR02836 spore_IV_A stage IV 96.3 0.026 5.6E-07 57.6 9.7 89 206-299 137-234 (492)
322 KOG0095 GTPase Rab30, small G 96.3 0.02 4.3E-07 50.5 7.7 96 200-295 67-165 (213)
323 KOG0076 GTP-binding ADP-ribosy 96.2 0.0092 2E-07 53.8 5.6 97 200-299 83-187 (197)
324 TIGR02836 spore_IV_A stage IV 96.2 0.0068 1.5E-07 61.7 5.2 35 305-339 16-65 (492)
325 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0064 1.4E-07 49.9 4.2 48 202-252 69-116 (116)
326 KOG0410 Predicted GTP binding 96.2 0.0029 6.3E-08 62.1 2.4 23 306-328 178-200 (410)
327 COG1084 Predicted GTPase [Gene 96.1 0.031 6.6E-07 55.0 9.2 96 201-297 235-334 (346)
328 KOG0395 Ras-related GTPase [Ge 96.1 0.031 6.7E-07 51.2 8.7 91 209-299 71-165 (196)
329 KOG0461 Selenocysteine-specifi 96.1 0.035 7.5E-07 55.2 9.3 97 196-298 78-192 (522)
330 KOG0077 Vesicle coat complex C 96.0 0.012 2.6E-07 52.7 5.4 98 197-297 75-191 (193)
331 CHL00071 tufA elongation facto 96.0 0.0087 1.9E-07 60.7 5.2 27 303-329 9-35 (409)
332 KOG0070 GTP-binding ADP-ribosy 96.0 0.02 4.3E-07 51.8 6.8 91 209-299 81-178 (181)
333 KOG2486 Predicted GTPase [Gene 96.0 0.0063 1.4E-07 58.6 3.7 38 304-341 134-173 (320)
334 KOG0410 Predicted GTP binding 96.0 0.011 2.5E-07 58.0 5.3 94 196-298 241-340 (410)
335 PLN03071 GTP-binding nuclear p 95.9 0.012 2.7E-07 54.2 5.3 38 304-341 11-49 (219)
336 PRK07560 elongation factor EF- 95.9 0.031 6.6E-07 60.9 9.0 53 202-256 100-152 (731)
337 PLN00116 translation elongatio 95.9 0.029 6.3E-07 62.0 8.8 58 196-256 106-163 (843)
338 KOG0098 GTPase Rab2, small G p 95.8 0.027 6E-07 51.3 6.8 93 200-294 66-163 (216)
339 TIGR00750 lao LAO/AO transport 95.8 0.064 1.4E-06 52.1 9.9 85 209-299 144-238 (300)
340 PRK05124 cysN sulfate adenylyl 95.8 0.0056 1.2E-07 63.4 2.6 30 303-332 24-53 (474)
341 KOG1532 GTPase XAB1, interacts 95.8 0.056 1.2E-06 52.3 9.1 83 214-298 149-263 (366)
342 PTZ00416 elongation factor 2; 95.7 0.019 4.2E-07 63.4 6.7 58 196-256 100-157 (836)
343 cd01882 BMS1 Bms1. Bms1 is an 95.6 0.01 2.2E-07 55.3 3.5 37 304-340 37-74 (225)
344 smart00053 DYNc Dynamin, GTPas 95.6 0.03 6.5E-07 53.0 6.6 43 288-330 5-50 (240)
345 KOG0071 GTP-binding ADP-ribosy 95.6 0.031 6.8E-07 48.9 6.0 96 201-299 76-178 (180)
346 cd01852 AIG1 AIG1 (avrRpt2-ind 95.6 0.095 2.1E-06 47.2 9.5 99 201-300 72-185 (196)
347 PF13191 AAA_16: AAA ATPase do 95.6 0.015 3.2E-07 51.0 4.1 44 286-329 4-47 (185)
348 KOG1547 Septin CDC10 and relat 95.5 0.018 3.9E-07 54.6 4.6 56 284-341 26-88 (336)
349 PF03029 ATP_bind_1: Conserved 95.5 0.021 4.5E-07 53.9 5.1 94 204-298 112-236 (238)
350 KOG0083 GTPase Rab26/Rab37, sm 95.5 0.031 6.6E-07 48.5 5.6 96 200-295 58-156 (192)
351 PRK14738 gmk guanylate kinase; 95.5 0.012 2.7E-07 53.9 3.3 26 305-330 12-37 (206)
352 TIGR00487 IF-2 translation ini 95.4 0.022 4.8E-07 60.5 5.3 39 305-344 86-124 (587)
353 cd01899 Ygr210 Ygr210 subfamil 95.2 0.052 1.1E-06 53.4 7.0 57 242-301 213-271 (318)
354 PF03308 ArgK: ArgK protein; 95.1 0.019 4.2E-07 54.8 3.5 35 292-328 17-51 (266)
355 PF08477 Miro: Miro-like prote 95.1 0.013 2.8E-07 47.7 2.1 45 210-254 71-119 (119)
356 PF13238 AAA_18: AAA domain; P 95.0 0.017 3.8E-07 47.3 2.7 21 309-329 1-21 (129)
357 KOG0091 GTPase Rab39, small G 95.0 0.29 6.2E-06 44.0 10.3 123 201-327 70-199 (213)
358 KOG1486 GTP-binding protein DR 95.0 0.022 4.8E-07 54.3 3.5 48 305-352 61-117 (364)
359 COG3596 Predicted GTPase [Gene 95.0 0.22 4.8E-06 48.1 10.2 97 204-300 109-223 (296)
360 PF13207 AAA_17: AAA domain; P 95.0 0.019 4.1E-07 47.2 2.7 21 309-329 2-22 (121)
361 KOG0079 GTP-binding protein H- 94.9 0.14 2.9E-06 45.4 7.8 92 206-297 74-167 (198)
362 cd04102 RabL3 RabL3 (Rab-like3 94.7 0.12 2.5E-06 47.5 7.6 49 208-258 73-144 (202)
363 PF13671 AAA_33: AAA domain; P 94.7 0.022 4.9E-07 48.0 2.6 21 309-329 2-22 (143)
364 KOG0087 GTPase Rab11/YPT3, sma 94.6 0.084 1.8E-06 49.0 6.2 83 210-294 84-171 (222)
365 COG0378 HypB Ni2+-binding GTPa 94.6 0.054 1.2E-06 49.8 4.9 75 215-297 120-199 (202)
366 PF00005 ABC_tran: ABC transpo 94.6 0.031 6.7E-07 46.9 3.1 27 306-332 11-37 (137)
367 TIGR00073 hypB hydrogenase acc 94.5 0.046 1E-06 49.9 4.4 26 304-329 20-45 (207)
368 COG1116 TauB ABC-type nitrate/ 94.5 0.035 7.5E-07 52.7 3.6 24 306-329 29-52 (248)
369 PRK12735 elongation factor Tu; 94.5 0.027 5.8E-07 56.9 3.1 26 303-328 9-34 (396)
370 PRK09270 nucleoside triphospha 94.4 0.064 1.4E-06 49.8 5.0 38 290-329 19-56 (229)
371 cd01850 CDC_Septin CDC/Septin. 94.4 0.1 2.3E-06 50.1 6.6 48 212-262 114-162 (276)
372 KOG0073 GTP-binding ADP-ribosy 94.3 0.073 1.6E-06 47.7 4.9 36 305-340 15-50 (185)
373 PF03205 MobB: Molybdopterin g 94.3 0.033 7.1E-07 48.2 2.7 21 308-328 2-22 (140)
374 cd01130 VirB11-like_ATPase Typ 94.3 0.064 1.4E-06 48.2 4.6 25 305-329 24-48 (186)
375 PRK10463 hydrogenase nickel in 94.2 0.058 1.3E-06 52.5 4.6 26 304-329 102-127 (290)
376 CHL00189 infB translation init 94.2 0.051 1.1E-06 59.2 4.6 37 304-341 242-278 (742)
377 cd00071 GMPK Guanosine monopho 94.2 0.038 8.2E-07 47.4 2.9 21 309-329 2-22 (137)
378 COG5258 GTPBP1 GTPase [General 94.2 0.26 5.6E-06 49.8 8.9 85 211-297 225-337 (527)
379 PLN03127 Elongation factor Tu; 94.1 0.1 2.2E-06 53.7 6.3 25 303-327 58-82 (447)
380 PRK05306 infB translation init 94.1 0.071 1.5E-06 58.5 5.4 37 304-341 288-324 (787)
381 COG4108 PrfC Peptide chain rel 94.1 0.16 3.5E-06 51.9 7.4 55 200-256 92-146 (528)
382 cd02019 NK Nucleoside/nucleoti 94.0 0.042 9.1E-07 41.5 2.4 21 309-329 2-22 (69)
383 KOG1490 GTP-binding protein CR 94.0 0.14 3.1E-06 53.1 6.9 79 214-292 249-334 (620)
384 PRK09435 membrane ATPase/prote 94.0 0.06 1.3E-06 53.4 4.1 25 304-328 54-78 (332)
385 KOG0458 Elongation factor 1 al 93.9 0.18 3.9E-06 53.0 7.6 87 200-288 266-371 (603)
386 PLN03210 Resistant to P. syrin 93.9 0.51 1.1E-05 54.1 12.0 127 201-328 54-229 (1153)
387 PF10662 PduV-EutP: Ethanolami 93.7 0.052 1.1E-06 47.5 2.8 23 308-330 3-25 (143)
388 cd00009 AAA The AAA+ (ATPases 93.7 0.12 2.5E-06 42.3 4.8 40 287-329 3-42 (151)
389 smart00763 AAA_PrkA PrkA AAA d 93.7 0.09 1.9E-06 52.6 4.8 23 307-329 79-101 (361)
390 TIGR00490 aEF-2 translation el 93.7 0.11 2.5E-06 56.4 6.0 53 203-257 100-152 (720)
391 PLN00023 GTP-binding protein; 93.5 0.14 2.9E-06 50.8 5.7 27 305-331 20-46 (334)
392 TIGR00554 panK_bact pantothena 93.5 0.11 2.3E-06 50.7 4.8 35 294-328 50-84 (290)
393 KOG0394 Ras-related GTPase [Ge 93.4 0.53 1.2E-05 43.1 8.8 88 210-297 79-176 (210)
394 KOG0468 U5 snRNP-specific prot 93.4 0.077 1.7E-06 56.6 3.9 58 196-256 205-262 (971)
395 cd03264 ABC_drug_resistance_li 93.2 0.066 1.4E-06 48.7 2.7 23 308-330 27-49 (211)
396 PRK06696 uridine kinase; Valid 93.1 0.16 3.5E-06 46.9 5.4 40 289-328 5-44 (223)
397 TIGR01526 nadR_NMN_Atrans nico 93.0 0.063 1.4E-06 52.9 2.4 33 307-339 163-195 (325)
398 PF13555 AAA_29: P-loop contai 92.9 0.084 1.8E-06 39.6 2.5 19 309-327 26-44 (62)
399 PF09439 SRPRB: Signal recogni 92.8 0.1 2.2E-06 47.4 3.4 50 209-259 72-128 (181)
400 PRK05439 pantothenate kinase; 92.8 0.14 3.1E-06 50.3 4.7 41 288-328 68-108 (311)
401 COG1136 SalX ABC-type antimicr 92.8 0.076 1.6E-06 49.9 2.6 28 305-332 30-57 (226)
402 COG2884 FtsE Predicted ATPase 92.8 0.073 1.6E-06 49.0 2.4 27 307-333 29-55 (223)
403 KOG0057 Mitochondrial Fe/S clu 92.8 0.078 1.7E-06 55.4 2.8 25 304-328 376-400 (591)
404 COG0466 Lon ATP-dependent Lon 92.7 0.18 3.9E-06 54.3 5.5 46 283-328 324-372 (782)
405 smart00382 AAA ATPases associa 92.7 0.1 2.2E-06 42.0 2.9 23 307-329 3-25 (148)
406 COG1703 ArgK Putative periplas 92.6 0.11 2.3E-06 50.8 3.4 25 304-328 49-73 (323)
407 PRK13900 type IV secretion sys 92.6 0.13 2.9E-06 50.8 4.3 24 305-328 159-182 (332)
408 PRK00049 elongation factor Tu; 92.6 0.093 2E-06 53.0 3.1 25 304-328 10-34 (396)
409 cd03225 ABC_cobalt_CbiO_domain 92.6 0.1 2.2E-06 47.3 3.2 25 306-330 27-51 (211)
410 TIGR02770 nickel_nikD nickel i 92.6 0.13 2.8E-06 47.6 3.8 27 306-332 12-38 (230)
411 PF03308 ArgK: ArgK protein; 92.5 0.64 1.4E-05 44.7 8.5 87 208-300 138-231 (266)
412 cd03261 ABC_Org_Solvent_Resist 92.5 0.097 2.1E-06 48.4 2.9 26 305-330 25-50 (235)
413 PLN03126 Elongation factor Tu; 92.5 0.16 3.4E-06 52.9 4.7 27 303-329 78-104 (478)
414 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.4 0.11 2.3E-06 47.5 3.0 25 306-330 30-54 (218)
415 PRK12736 elongation factor Tu; 92.4 0.1 2.2E-06 52.7 3.0 26 303-328 9-34 (394)
416 KOG0054 Multidrug resistance-a 92.4 0.088 1.9E-06 60.7 2.9 25 305-329 1165-1189(1381)
417 TIGR02673 FtsE cell division A 92.3 0.11 2.5E-06 47.1 3.1 26 305-330 27-52 (214)
418 TIGR00960 3a0501s02 Type II (G 92.3 0.11 2.4E-06 47.4 3.0 26 305-330 28-53 (216)
419 KOG0448 Mitofusin 1 GTPase, in 92.2 0.19 4.2E-06 53.7 5.0 46 286-335 93-138 (749)
420 cd03224 ABC_TM1139_LivF_branch 92.2 0.12 2.7E-06 47.1 3.2 26 305-330 25-50 (222)
421 TIGR01166 cbiO cobalt transpor 92.2 0.12 2.6E-06 46.2 3.0 25 306-330 18-42 (190)
422 cd03263 ABC_subfamily_A The AB 92.2 0.12 2.6E-06 47.2 3.1 25 306-330 28-52 (220)
423 COG0050 TufB GTPases - transla 92.2 0.81 1.8E-05 44.9 8.7 102 196-300 83-202 (394)
424 cd03260 ABC_PstB_phosphate_tra 92.1 0.12 2.6E-06 47.5 3.0 26 305-330 25-50 (227)
425 TIGR03608 L_ocin_972_ABC putat 92.1 0.12 2.6E-06 46.6 3.0 25 306-330 24-48 (206)
426 cd03258 ABC_MetN_methionine_tr 92.1 0.13 2.8E-06 47.5 3.2 26 305-330 30-55 (233)
427 PF04670 Gtr1_RagA: Gtr1/RagA 92.1 0.35 7.5E-06 45.6 6.1 53 208-260 72-128 (232)
428 COG3840 ThiQ ABC-type thiamine 92.1 0.11 2.3E-06 47.7 2.5 23 307-329 26-48 (231)
429 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 92.0 0.29 6.3E-06 46.0 5.5 26 305-330 12-37 (232)
430 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.0 0.13 2.7E-06 44.4 2.8 25 306-330 26-50 (144)
431 cd03222 ABC_RNaseL_inhibitor T 92.0 0.12 2.6E-06 46.5 2.8 26 305-330 24-49 (177)
432 TIGR00485 EF-Tu translation el 92.0 0.12 2.6E-06 52.1 3.1 26 303-328 9-34 (394)
433 cd03265 ABC_DrrA DrrA is the A 92.0 0.13 2.8E-06 47.2 3.0 25 306-330 26-50 (220)
434 COG1135 AbcC ABC-type metal io 91.9 0.11 2.4E-06 50.9 2.6 24 307-330 33-56 (339)
435 PLN00023 GTP-binding protein; 91.9 0.17 3.6E-06 50.2 3.9 48 209-258 103-166 (334)
436 TIGR02868 CydC thiol reductant 91.9 0.12 2.6E-06 53.8 3.0 28 304-331 359-386 (529)
437 cd03259 ABC_Carb_Solutes_like 91.9 0.13 2.8E-06 46.8 2.9 25 306-330 26-50 (213)
438 PLN02772 guanylate kinase 91.9 0.11 2.5E-06 52.5 2.7 23 307-329 136-158 (398)
439 cd03226 ABC_cobalt_CbiO_domain 91.9 0.13 2.9E-06 46.5 3.0 25 306-330 26-50 (205)
440 cd03292 ABC_FtsE_transporter F 91.9 0.13 2.7E-06 46.8 2.8 26 305-330 26-51 (214)
441 cd03231 ABC_CcmA_heme_exporter 91.9 0.14 3E-06 46.4 3.1 26 305-330 25-50 (201)
442 cd03238 ABC_UvrA The excision 91.8 0.14 3E-06 46.1 3.0 24 305-328 20-43 (176)
443 PRK13541 cytochrome c biogenes 91.8 0.14 3E-06 46.1 3.0 25 306-330 26-50 (195)
444 cd03262 ABC_HisP_GlnQ_permease 91.8 0.15 3.2E-06 46.3 3.1 26 305-330 25-50 (213)
445 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.13 2.9E-06 47.1 2.9 25 306-330 30-54 (220)
446 cd03229 ABC_Class3 This class 91.8 0.14 3.1E-06 45.4 3.0 26 305-330 25-50 (178)
447 PRK11124 artP arginine transpo 91.8 0.13 2.9E-06 47.7 2.9 26 305-330 27-52 (242)
448 cd03257 ABC_NikE_OppD_transpor 91.8 0.14 3.1E-06 46.8 3.1 26 305-330 30-55 (228)
449 KOG0081 GTPase Rab27, small G 91.7 1.3 2.8E-05 39.7 8.8 85 211-297 89-179 (219)
450 cd03269 ABC_putative_ATPase Th 91.7 0.14 3E-06 46.5 2.9 25 306-330 26-50 (210)
451 cd03256 ABC_PhnC_transporter A 91.7 0.15 3.2E-06 47.2 3.1 26 305-330 26-51 (241)
452 cd03216 ABC_Carb_Monos_I This 91.7 0.15 3.2E-06 44.8 2.9 26 305-330 25-50 (163)
453 KOG0070 GTP-binding ADP-ribosy 91.7 0.15 3.3E-06 46.2 3.0 38 303-340 14-51 (181)
454 TIGR02211 LolD_lipo_ex lipopro 91.6 0.15 3.3E-06 46.6 3.1 25 306-330 31-55 (221)
455 KOG0393 Ras-related small GTPa 91.6 0.7 1.5E-05 42.6 7.3 89 209-297 73-177 (198)
456 PRK10418 nikD nickel transport 91.6 0.2 4.4E-06 47.1 4.0 27 305-331 28-54 (254)
457 COG0523 Putative GTPases (G3E 91.6 0.51 1.1E-05 46.6 6.9 76 211-291 115-193 (323)
458 cd03301 ABC_MalK_N The N-termi 91.6 0.15 3.2E-06 46.3 3.0 26 305-330 25-50 (213)
459 cd03215 ABC_Carb_Monos_II This 91.6 0.16 3.4E-06 45.3 3.1 26 305-330 25-50 (182)
460 cd03236 ABC_RNaseL_inhibitor_d 91.6 0.15 3.3E-06 48.3 3.2 31 305-335 25-55 (255)
461 PRK13540 cytochrome c biogenes 91.6 0.16 3.4E-06 46.0 3.1 26 305-330 26-51 (200)
462 cd03369 ABCC_NFT1 Domain 2 of 91.5 0.16 3.4E-06 46.1 3.1 26 305-330 33-58 (207)
463 KOG0080 GTPase Rab18, small G 91.5 0.34 7.5E-06 43.4 5.0 32 305-336 10-41 (209)
464 PRK13851 type IV secretion sys 91.5 0.23 5E-06 49.4 4.4 25 305-329 161-185 (344)
465 PRK14242 phosphate transporter 91.5 0.15 3.2E-06 47.8 2.9 25 305-329 31-55 (253)
466 PF00350 Dynamin_N: Dynamin fa 91.5 0.33 7.2E-06 41.9 5.0 48 204-253 120-168 (168)
467 PRK11264 putative amino-acid A 91.5 0.15 3.2E-06 47.6 2.9 26 305-330 28-53 (250)
468 TIGR02315 ABC_phnC phosphonate 91.5 0.15 3.2E-06 47.3 2.9 26 305-330 27-52 (243)
469 cd03235 ABC_Metallic_Cations A 91.5 0.16 3.4E-06 46.3 3.0 26 305-330 24-49 (213)
470 cd03218 ABC_YhbG The ABC trans 91.5 0.16 3.4E-06 46.8 3.1 26 305-330 25-50 (232)
471 PRK13539 cytochrome c biogenes 91.5 0.16 3.6E-06 46.2 3.1 26 305-330 27-52 (207)
472 cd03266 ABC_NatA_sodium_export 91.5 0.16 3.5E-06 46.3 3.1 25 306-330 31-55 (218)
473 COG1100 GTPase SAR1 and relate 91.4 2.4 5.2E-05 38.0 10.7 90 208-298 73-184 (219)
474 PRK11248 tauB taurine transpor 91.4 0.16 3.5E-06 47.9 3.1 26 305-330 26-51 (255)
475 PRK11701 phnK phosphonate C-P 91.4 0.16 3.5E-06 47.7 3.0 26 305-330 31-56 (258)
476 TIGR03410 urea_trans_UrtE urea 91.4 0.17 3.6E-06 46.6 3.1 26 305-330 25-50 (230)
477 TIGR01189 ccmA heme ABC export 91.3 0.17 3.7E-06 45.6 3.0 26 305-330 25-50 (198)
478 COG1132 MdlB ABC-type multidru 91.3 0.15 3.3E-06 53.5 3.1 28 304-331 353-380 (567)
479 COG3638 ABC-type phosphate/pho 91.3 0.15 3.2E-06 48.4 2.6 23 307-329 31-53 (258)
480 PRK15177 Vi polysaccharide exp 91.3 0.19 4.1E-06 46.1 3.4 25 306-330 13-37 (213)
481 PRK11629 lolD lipoprotein tran 91.3 0.16 3.4E-06 47.1 2.8 25 306-330 35-59 (233)
482 TIGR01978 sufC FeS assembly AT 91.2 0.17 3.6E-06 46.9 3.0 25 305-329 25-49 (243)
483 PRK14269 phosphate ABC transpo 91.2 0.17 3.7E-06 47.3 3.0 24 306-329 28-51 (246)
484 COG4988 CydD ABC-type transpor 91.2 0.17 3.6E-06 53.3 3.1 28 305-332 346-373 (559)
485 cd03268 ABC_BcrA_bacitracin_re 91.1 0.17 3.8E-06 45.8 2.9 25 306-330 26-50 (208)
486 TIGR03864 PQQ_ABC_ATP ABC tran 91.1 0.17 3.7E-06 46.9 2.9 26 305-330 26-51 (236)
487 PRK14262 phosphate ABC transpo 91.1 0.17 3.7E-06 47.2 2.9 24 306-329 29-52 (250)
488 PF00437 T2SE: Type II/IV secr 91.1 0.28 6.1E-06 46.4 4.4 24 305-328 126-149 (270)
489 PRK14241 phosphate transporter 91.1 0.17 3.8E-06 47.5 2.9 26 305-330 29-54 (258)
490 cd03214 ABC_Iron-Siderophores_ 91.1 0.19 4.2E-06 44.6 3.1 26 305-330 24-49 (180)
491 cd03296 ABC_CysA_sulfate_impor 91.1 0.18 3.8E-06 46.9 2.9 25 306-330 28-52 (239)
492 cd03297 ABC_ModC_molybdenum_tr 91.0 0.16 3.5E-06 46.2 2.7 24 307-330 24-47 (214)
493 KOG2655 Septin family protein 91.0 0.24 5.3E-06 49.6 4.0 26 305-330 20-45 (366)
494 PRK14247 phosphate ABC transpo 91.0 0.18 3.9E-06 47.1 3.0 26 305-330 28-53 (250)
495 PRK09602 translation-associate 91.0 0.43 9.4E-06 48.4 5.9 56 242-300 216-272 (396)
496 TIGR02788 VirB11 P-type DNA tr 91.0 0.29 6.3E-06 47.7 4.5 25 305-329 143-167 (308)
497 cd03217 ABC_FeS_Assembly ABC-t 91.0 0.19 4.1E-06 45.6 3.0 25 305-329 25-49 (200)
498 cd03219 ABC_Mj1267_LivG_branch 91.0 0.19 4E-06 46.5 3.0 26 305-330 25-50 (236)
499 cd00820 PEPCK_HprK Phosphoenol 91.0 0.17 3.7E-06 42.1 2.4 22 306-327 15-36 (107)
500 PRK10575 iron-hydroxamate tran 91.0 0.18 4E-06 47.7 3.0 26 305-330 36-61 (265)
No 1
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=1.5e-112 Score=823.42 Aligned_cols=344 Identities=57% Similarity=0.933 Sum_probs=331.9
Q ss_pred cccccccCCCCCCCCCCCCCC--CCCCcccHHhhhhhhhccC-CcCCCCCCCeecc-cccCCCCCCccccCCCcccccee
Q 018454 5 KEKKVNVSGKPKHSLDANRTD--GKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTR 80 (355)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~r~~--~~~~~r~~~~~~~l~m~~~-~~~r~~~g~~~~~-~~~~~~~~~~ri~p~r~wf~ntr 80 (355)
++++.+.+..++||+||+|.. |+++||+++||+|||||++ ||+||+.|+|+++ +||++.+|.||||||||||||||
T Consensus 5 ~k~k~~~~~~~~hs~np~r~~~k~~~~~r~k~tv~rL~Myrs~k~krns~Gkil~~a~fQss~~~~aRieP~rkWFgntR 84 (572)
T KOG2423|consen 5 KKEKSRTIRESKHSTNPGRLRGKGENNYRNKKTVKRLNMYRSGKPKRNSKGKILKAAPFQSSLAPVARIEPDRKWFGNTR 84 (572)
T ss_pred ccccccccCCccccCCccccccccccccccHHHHHHHHHHhccCcccccCCccccccccccccCcccccCCCchhccCce
Confidence 566777888999999999986 8999999999999999995 9999999999997 89999999999999999999999
Q ss_pred eechHHHHHHHHHHHhhhcCCcEEEecCCCcccccccchhhhhhhccccccccccccCCCCCCCCCCCCcCCHHHHHHHH
Q 018454 81 CVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRA 160 (355)
Q Consensus 81 vi~q~~l~~f~~~~~~~~~~p~~v~~~~~klp~~l~~~~~~~~~~~~~~~~~f~~~fg~~~qrkrp~l~~~~~~~l~~~~ 160 (355)
||+|++||+||++|+++++|||+||||++|||||||+|..+..++|+||+|||++|||+|+|||||+|.++++|+|.+.+
T Consensus 85 vI~q~~Lq~Fr~e~g~~~~dpyqVllk~~KlPmSLL~e~~k~~rvhvldtesF~~tFG~KsqRKRp~L~~s~le~L~k~a 164 (572)
T KOG2423|consen 85 VISQTELQKFREELGKKLKDPYQVLLKQSKLPMSLLQEKTKTPRVHVLDTESFEDTFGPKSQRKRPKLTASSLEELSKAA 164 (572)
T ss_pred eecHHHHHHHHHHHHhhhcChhhheeecCCCChhhhhccccCcceeeecccchhhhhCchhhhcCcccchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh
Q 018454 161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~ 240 (355)
+..+..|+.+...+. ..+++|+....++++|.+|||+|+|.++|++|+++||||+|+|||||+|++|.++++||+++
T Consensus 165 ~e~~~~yee~~~~~~---~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke 241 (572)
T KOG2423|consen 165 EESDDKYEEKKLGDL---REEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKE 241 (572)
T ss_pred hhhhhhhhhhccccc---hhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhc
Confidence 999999998855443 45678899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChh
Q 018454 241 CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320 (355)
Q Consensus 241 ~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKS 320 (355)
.+|||+|+|+|||||+|.|++..|+..|++++|+++||+|..+.+|.+.|+++|+||..+|.++++|+||||||||||||
T Consensus 242 ~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKS 321 (572)
T KOG2423|consen 242 KPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKS 321 (572)
T ss_pred CCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCccccCCCCCee-EEEEEEEeee
Q 018454 321 SVINTLRTKNVILFFPASVVW-YWFYCQLLFY 351 (355)
Q Consensus 321 SLIN~Ll~~~~~~vs~iPGtT-~~~y~~l~~~ 351 (355)
|+||+|+.+++|+|+||||+| +||||||++.
T Consensus 322 SiINTLR~KkVCkvAPIpGETKVWQYItLmkr 353 (572)
T KOG2423|consen 322 SIINTLRKKKVCKVAPIPGETKVWQYITLMKR 353 (572)
T ss_pred HHHHHHhhcccccccCCCCcchHHHHHHHHhc
Confidence 999999999999999999999 9999999874
No 2
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=100.00 E-value=3e-56 Score=375.52 Aligned_cols=127 Identities=57% Similarity=1.014 Sum_probs=122.5
Q ss_pred hccC-CcCCCCCCCeecc-cccCCCCCCccccCCCccccceeeechHHHHHHHHHHHhhhcCCcEEEecCCCcccccccc
Q 018454 41 MYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLND 118 (355)
Q Consensus 41 m~~~-~~~r~~~g~~~~~-~~~~~~~~~~ri~p~r~wf~ntrvi~q~~l~~f~~~~~~~~~~p~~v~~~~~klp~~l~~~ 118 (355)
||++ ||+||++||||++ .||+.+.++||||||||||||||||||++|++|||||+++.+|||+||||++|||||||+|
T Consensus 1 My~~gk~~Rn~~Gkiik~a~~q~~~~~~aRI~PdRrWFgNTRvI~Q~~L~~FReem~~~~~DPy~VlLk~~KLPmsLL~d 80 (130)
T PF08153_consen 1 MYKSGKPKRNRKGKIIKAAPFQSKEGPPARIEPDRRWFGNTRVISQEALEKFREEMGEKVKDPYSVLLKRSKLPMSLLQD 80 (130)
T ss_pred CCCCCCcccCCCCCEeechhccCCCCCccccccchhhhcCceEECHHHHHHHHHHHHHhhcCCceEeeeCCcCCHHHhcc
Confidence 9997 9999999999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhhhhccccccccccccCCCCCCCCCCCCcCCHHHHHHHHhhhHHHH
Q 018454 119 H-QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAF 167 (355)
Q Consensus 119 ~-~~~~~~~~~~~~~f~~~fg~~~qrkrp~l~~~~~~~l~~~~~~~~~~~ 167 (355)
. .+..++|||++|||++|||||+|||||+|.++|+|||++.++..+..|
T Consensus 81 ~~~k~~~~~il~te~F~~tFGpKaqRKRpkL~~~~~eeLa~~a~~~~~~Y 130 (130)
T PF08153_consen 81 SGTKQKRVHILETEPFEDTFGPKAQRKRPKLSVSSLEELAKKAEESQESY 130 (130)
T ss_pred cccccCCcceeecCCHHHHhCCcccccCccccccCHHHHHHHHHHhhccC
Confidence 9 888999999999999999999999999999999999999998776554
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=250.03 Aligned_cols=166 Identities=36% Similarity=0.461 Sum_probs=143.3
Q ss_pred hhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc
Q 018454 162 GSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC 241 (355)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~ 241 (355)
.|++|+..+|++.+ .+| +||+.++|+++.++++.+|+|+.|+|||+|.+++++.+++++.
T Consensus 1 ~~~~~~~~~~~~~i----------------~~~-~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--- 60 (322)
T COG1161 1 QCQRCFRLKHYNKI----------------QWF-PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--- 60 (322)
T ss_pred CchhhhHHHhcccc----------------cCC-CCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc---
Confidence 49999999998743 234 7889999999999999999999999999999999999999986
Q ss_pred CCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHH--------HHHHHHHhhhccccceEEEEee
Q 018454 242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL--------SVLRQFARLKSDKQAISVGFVG 313 (355)
Q Consensus 242 ~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll--------~~L~q~~~~~~~~~~i~V~~vG 313 (355)
+++.++|+||+||+|....+.|.+++....+..++.+|+..+.+...+. +.+.++.........++|||||
T Consensus 61 -~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG 139 (322)
T COG1161 61 -EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVG 139 (322)
T ss_pred -cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEc
Confidence 4677999999999999999999999999877777888888888887777 4444444433345568999999
Q ss_pred cCCCChhHHHHHhhccCccccCCCCCee-EEEEEEE
Q 018454 314 YPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQL 348 (355)
Q Consensus 314 ~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~l 348 (355)
+||||||||||+|++++.++||+.||+| -.|++.+
T Consensus 140 ~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~ 175 (322)
T COG1161 140 YPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL 175 (322)
T ss_pred CCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc
Confidence 9999999999999999999999999999 6666654
No 4
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.96 E-value=4.5e-30 Score=250.65 Aligned_cols=143 Identities=44% Similarity=0.658 Sum_probs=130.9
Q ss_pred HHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEE
Q 018454 199 SKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFH 278 (355)
Q Consensus 199 s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~ 278 (355)
-+...+++.++++.+||||+|+|||||++++|+.+++.+.....++.+|+||||+||+|.++.+.|+.||+.++|+++|.
T Consensus 133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fk 212 (435)
T KOG2484|consen 133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFK 212 (435)
T ss_pred HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceee
Confidence 35677999999999999999999999999999999999976556799999999999999999999999999999999998
Q ss_pred eeec------------CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 279 ASIN------------KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 279 vSa~------------~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
+|.. ..+|.+.|+..|..++..+.-+..|.||+||||||||||+||+|...+.|.|++.||.|
T Consensus 213 ast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT 287 (435)
T KOG2484|consen 213 ASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT 287 (435)
T ss_pred cccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch
Confidence 7643 23688899999999988766688999999999999999999999999999999999998
No 5
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=252.78 Aligned_cols=256 Identities=26% Similarity=0.318 Sum_probs=167.5
Q ss_pred CCCccccceeeechHHHHHHHHH--HHhh----hcCCcEEEe--cCCCcccccccchhhhhhhccccccccccccCCCCC
Q 018454 71 PDRRWFGNTRCVNQKQLEFFREE--LQSH----MSSSYNVIL--REKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGK 142 (355)
Q Consensus 71 p~r~wf~ntrvi~q~~l~~f~~~--~~~~----~~~p~~v~~--~~~klp~~l~~~~~~~~~~~~~~~~~f~~~fg~~~q 142 (355)
++--|.-=+.|..+++|+.|+.. ++.. .+...++|= .++..+.| .....+.+-.. |. ..-+..-.-
T Consensus 41 ~~~~~~~l~svt~~s~~d~~l~~ae~a~~~f~ae~~~~~~i~~~~~~~~~~s----~~ee~r~~q~~-ee-~~~~~~L~i 114 (562)
T KOG1424|consen 41 YEWGKLVLESVTEESDLDAFLGTAELAETEFTAEKSNETIIENEQRTGSLSS----ATEEQRELQKQ-EE-ALNASRLDI 114 (562)
T ss_pred cccccceeeeeecccChHHhhhhhhhhhhhhhhhhccccccchhhccccccc----HHHHhhhhhhh-hh-hhhcccccc
Confidence 33444566788899999999984 3321 122222221 11112222 11111111111 11 001223344
Q ss_pred CCCCCCCcC-CHHHHHHHHhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEec
Q 018454 143 RKRPKLLAS-DYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLD 221 (355)
Q Consensus 143 rkrp~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvD 221 (355)
++||.|... +.|+|........-.|.-+-.. ..+.+++ ..++|+++ ..+|+|||++++.||+||+|||
T Consensus 115 PRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~-----Lqe~e~l----~lTpFErN--LE~WRQLWRVlErSDivvqIVD 183 (562)
T KOG1424|consen 115 PRRPPWTLEMSKEELDRQEKEAFLEWRRKLAS-----LQENEKL----VLTPFERN--LEIWRQLWRVLERSDIVVQIVD 183 (562)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hhhcCCe----eechhhhC--HHHHHHHHHHHhhcceEEEEee
Confidence 678888764 8888887776665555543222 1222322 35789999 9999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC------C----------C
Q 018454 222 ARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK------S----------F 285 (355)
Q Consensus 222 ardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~------~----------~ 285 (355)
||+|...+|+.|+.|+.+...+|..+|++||+||+++.....|..||...+.-.+| -||.. + .
T Consensus 184 ARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf-~SA~~at~~~~~~~~~e~~r~~d 262 (562)
T KOG1424|consen 184 ARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVF-FSALAATEQLESKVLKEDRRSLD 262 (562)
T ss_pred cCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEE-Eecccccccccccchhhhhhccc
Confidence 99999999999999999877789999999999999999999999999887643333 34332 0 0
Q ss_pred Ch------------HHHHHHHH-------HHHhh-----------h-ccccceEEEEeecCCCChhHHHHHhhccCcccc
Q 018454 286 GK------------GSLLSVLR-------QFARL-----------K-SDKQAISVGFVGYPNVGKSSVINTLRTKNVILF 334 (355)
Q Consensus 286 Gi------------~~Ll~~L~-------q~~~~-----------~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v 334 (355)
|. +.++..+. +...+ + ..+..++||+||||||||||+||+|.+.+++.|
T Consensus 263 ~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsV 342 (562)
T KOG1424|consen 263 GVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSV 342 (562)
T ss_pred chhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeee
Confidence 11 10111000 00000 0 112359999999999999999999999999999
Q ss_pred CCCCCeeEEE
Q 018454 335 FPASVVWYWF 344 (355)
Q Consensus 335 s~iPGtT~~~ 344 (355)
|.+||.|+|+
T Consensus 343 S~TPGkTKHF 352 (562)
T KOG1424|consen 343 SSTPGKTKHF 352 (562)
T ss_pred ecCCCCccee
Confidence 9999999653
No 6
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=1.1e-28 Score=216.15 Aligned_cols=143 Identities=66% Similarity=1.106 Sum_probs=124.7
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
++|..++.+|+|++|+|+++|.++.+..+.+++.....++|+|+|+||+||++......|...+.+.++..++++|++++
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 36788999999999999999998889999999875434699999999999998877788999998877776788999999
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEE
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQ 347 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~ 347 (355)
.|+++|++.|.+++.......++.|+|+|.||||||||||+|++...+.++++||+| ..+++.
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~ 144 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT 144 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE
Confidence 999999999998876544445789999999999999999999999999999999999 444444
No 7
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.94 E-value=2.7e-26 Score=219.49 Aligned_cols=148 Identities=28% Similarity=0.384 Sum_probs=128.3
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~ 275 (355)
+||+.++++++.+.++.+|+||+|+|+++|.++.+..+++++ .++|+|+|+||+||++......|.+++... ...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~ 79 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEK-GIK 79 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHc-CCe
Confidence 789999999999999999999999999999999998888877 368999999999999877677898888652 345
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhhhcc--------ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEE
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARLKSD--------KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYC 346 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~--------~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~ 346 (355)
++.+|+.++.|+++|++.|.++++.... ...+.+++||+||||||||||+|.+.+.+.|++.||+| ..+++
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~ 159 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI 159 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEE
Confidence 6778999999999999999888765321 24688999999999999999999999999999999999 66666
Q ss_pred EE
Q 018454 347 QL 348 (355)
Q Consensus 347 ~l 348 (355)
.+
T Consensus 160 ~~ 161 (276)
T TIGR03596 160 KL 161 (276)
T ss_pred Ee
Confidence 54
No 8
>PRK13796 GTPase YqeH; Provisional
Probab=99.94 E-value=4.7e-26 Score=225.98 Aligned_cols=155 Identities=30% Similarity=0.349 Sum_probs=121.4
Q ss_pred hhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCC-EEEEEecCCCCCCCcchHHHHHHHh
Q 018454 161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSD-VVVQVLDARDPQGTRCHHLERHLKE 239 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sD-vVL~VvDardp~~s~~~~l~~~L~~ 239 (355)
..|||||+++||+++..+..+.++|.. +.+.+..+| +|++|+|+.|+.++..+.+.+++
T Consensus 35 ~~C~RC~~l~hy~~~~~~~~~~~~~~~------------------~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~-- 94 (365)
T PRK13796 35 VYCQRCFRLKHYNEIQDVSLTDDDFLK------------------LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV-- 94 (365)
T ss_pred eEchhhhhhhccCcccCCCCCHHHHHH------------------HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--
Confidence 479999999999988766555444432 334455555 99999999999988877777665
Q ss_pred hcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEe
Q 018454 240 HCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFV 312 (355)
Q Consensus 240 ~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~v 312 (355)
.++++++|+||+||++.. ....|...+.+... ..++.+|+++++|+++|++.|.++. .+..++||
T Consensus 95 --~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~------~~~~v~vv 166 (365)
T PRK13796 95 --GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYR------EGRDVYVV 166 (365)
T ss_pred --CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEE
Confidence 368999999999998743 34567776554432 3577889999999999999998764 24578999
Q ss_pred ecCCCChhHHHHHhhcc-----CccccCCCCCeeEE
Q 018454 313 GYPNVGKSSVINTLRTK-----NVILFFPASVVWYW 343 (355)
Q Consensus 313 G~pNVGKSSLIN~Ll~~-----~~~~vs~iPGtT~~ 343 (355)
|+||||||||||+|++. ..+++|++||||++
T Consensus 167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~ 202 (365)
T PRK13796 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD 202 (365)
T ss_pred cCCCCcHHHHHHHHHhhccCccceEEecCCCCccce
Confidence 99999999999999864 46789999999954
No 9
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.94 E-value=3.3e-26 Score=226.66 Aligned_cols=163 Identities=28% Similarity=0.309 Sum_probs=126.0
Q ss_pred HHhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH
Q 018454 159 RADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK 238 (355)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~ 238 (355)
....|||||+++||+.+..+....++|.. .+..+...+|+|++|+|+.|++++..+.+.+++
T Consensus 27 ~~~~C~RC~~l~hy~~~~~~~~~~e~f~~-----------------~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~- 88 (360)
T TIGR03597 27 EEVYCQRCFRLKHYNEIQDVELNDDDFLN-----------------LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV- 88 (360)
T ss_pred CCeeecchhhhhccCccccCCCCHHHHHH-----------------HHhhcccCCcEEEEEEECcCCCCCccHHHHHHh-
Confidence 34589999999999987766544444432 233356788999999999999998888887776
Q ss_pred hhcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEE
Q 018454 239 EHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGF 311 (355)
Q Consensus 239 ~~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~ 311 (355)
.++|+++|+||+||++.. ....|...+.+... ..++.+||++++|+++|++.|.++. .+..|+|
T Consensus 89 ---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~------~~~~v~~ 159 (360)
T TIGR03597 89 ---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR------NKKDVYV 159 (360)
T ss_pred ---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh------CCCeEEE
Confidence 368999999999998754 34556654333332 2477889999999999999998764 2468999
Q ss_pred eecCCCChhHHHHHhhcc-----CccccCCCCCee-EEEEEEE
Q 018454 312 VGYPNVGKSSVINTLRTK-----NVILFFPASVVW-YWFYCQL 348 (355)
Q Consensus 312 vG~pNVGKSSLIN~Ll~~-----~~~~vs~iPGtT-~~~y~~l 348 (355)
||.||||||||||+|++. +.+++|+.|||| ..+++.+
T Consensus 160 vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~ 202 (360)
T TIGR03597 160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL 202 (360)
T ss_pred ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe
Confidence 999999999999999984 358999999999 4444443
No 10
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.94 E-value=9.1e-26 Score=217.00 Aligned_cols=147 Identities=27% Similarity=0.375 Sum_probs=126.4
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~ 275 (355)
+||+.+.+++++++++.+|+||+|+|+++|.++.+..+++++. ++|+++|+||+||++......|.+++... ...
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~-~~~ 82 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQ-GIK 82 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHc-CCe
Confidence 7899999999999999999999999999999999888887763 68999999999999876667898888643 234
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhhhc--------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEE
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYC 346 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~--------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~ 346 (355)
++.+|+.++.|+++|++.|.++++... ....+.|+|||+||||||||||+|.+.+++.+++.||+| .++++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 567899999999999999988876532 135688999999999999999999999999999999999 44444
Q ss_pred E
Q 018454 347 Q 347 (355)
Q Consensus 347 ~ 347 (355)
.
T Consensus 163 ~ 163 (287)
T PRK09563 163 K 163 (287)
T ss_pred E
Confidence 4
No 11
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.94 E-value=8.6e-26 Score=203.44 Aligned_cols=156 Identities=27% Similarity=0.333 Sum_probs=116.2
Q ss_pred hHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcC
Q 018454 163 SQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK 242 (355)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~ 242 (355)
|+|||+++||++......+..+ .+...+..+++++|+||+|+|++++..+....+... ..
T Consensus 1 C~rC~~l~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~----~~ 60 (190)
T cd01855 1 CQRCFRLKHYNKIDPVEIPDED----------------FILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF----GG 60 (190)
T ss_pred CcchhhhhccCccccccCChHH----------------HHHHHHHhcccCCcEEEEEEECccCCCccchhHHHh----cC
Confidence 9999999999977544322211 134556668899999999999999886666555221 24
Q ss_pred CCcEEEEEeccCCCChhh----HHHHHHHH--hhh-C-CceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeec
Q 018454 243 HKHMILLLNKCDLVPAWA----TKGWLRVL--SKE-Y-PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGY 314 (355)
Q Consensus 243 ~k~vILVlNK~DLvp~~~----~~~w~~~l--~~~-~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~ 314 (355)
++|+++|+||+||++... ...|...+ ... . +..+|.+|++++.|+++|++.|.++++ ....++|||.
T Consensus 61 ~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~ 135 (190)
T cd01855 61 NNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGA 135 (190)
T ss_pred CCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcC
Confidence 789999999999986433 23344111 111 1 224678999999999999999988875 3467899999
Q ss_pred CCCChhHHHHHhhccC--------ccccCCCCCeeEE
Q 018454 315 PNVGKSSVINTLRTKN--------VILFFPASVVWYW 343 (355)
Q Consensus 315 pNVGKSSLIN~Ll~~~--------~~~vs~iPGtT~~ 343 (355)
||||||||||+|++.. .+.+++.||||++
T Consensus 136 ~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~ 172 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD 172 (190)
T ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCCCeeee
Confidence 9999999999999854 3678999999955
No 12
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.92 E-value=9.8e-25 Score=195.34 Aligned_cols=134 Identities=40% Similarity=0.668 Sum_probs=108.0
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe--------------
Q 018454 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA-------------- 279 (355)
Q Consensus 214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v-------------- 279 (355)
|+|++|+|+++|+++.++.+.+++.-...++|+|+|+||+||+++.....|.+++.+.+++..|..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 899999999999999999999884211247999999999999999888999999988776655432
Q ss_pred ----------eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE-EEEEE
Q 018454 280 ----------SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY-WFYCQ 347 (355)
Q Consensus 280 ----------Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~-~~y~~ 347 (355)
|+.++.|.+.|++.+.++.........+.|+|+|+||||||||||+|.+.+.+.+++.||+|+ .+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~ 159 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH 159 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE
Confidence 333455667777778776654434556899999999999999999999999999999999994 44443
No 13
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.92 E-value=7.4e-24 Score=188.28 Aligned_cols=148 Identities=28% Similarity=0.354 Sum_probs=121.8
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~ 275 (355)
+||+.++++++++.++++|+||+|+|+++|....+..+..++ .++++++|+||+||++......|.+++.... ..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~-~~ 77 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKG-EK 77 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcC-Ce
Confidence 678999999999999999999999999999877666655544 3689999999999987765567877766543 34
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhh-------hccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEE
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARL-------KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQ 347 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~-------~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~ 347 (355)
++.+|++++.|+++|.+.|.++.+. ........++++|.||||||||||+|.+...+.++++||+| .++++.
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~ 157 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIK 157 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEE
Confidence 6778999999999999999887531 11234578999999999999999999999989999999999 666555
Q ss_pred E
Q 018454 348 L 348 (355)
Q Consensus 348 l 348 (355)
+
T Consensus 158 ~ 158 (171)
T cd01856 158 I 158 (171)
T ss_pred e
Confidence 4
No 14
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.90 E-value=6.1e-23 Score=179.46 Aligned_cols=133 Identities=41% Similarity=0.561 Sum_probs=108.5
Q ss_pred CEEEEEecCCCCCCCcchHHH-HHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHH
Q 018454 214 DVVVQVLDARDPQGTRCHHLE-RHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLS 292 (355)
Q Consensus 214 DvVL~VvDardp~~s~~~~l~-~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~ 292 (355)
|+||+|+|+++|.++.+..+. .++.. .++|+|+|+||+||++......|..++....+..++.+|+.++.|+++|.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 899999999999988887777 34443 579999999999999887677888777655566678899999999999999
Q ss_pred HHHHHHhh--------hccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEEE
Q 018454 293 VLRQFARL--------KSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQL 348 (355)
Q Consensus 293 ~L~q~~~~--------~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~l 348 (355)
.|.+.... ........++++|+||||||||||+|.+...+.+++.||+| .++++.+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~ 143 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL 143 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe
Confidence 88654211 11235688999999999999999999999999999999999 6665543
No 15
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.89 E-value=1.3e-22 Score=174.81 Aligned_cols=120 Identities=40% Similarity=0.558 Sum_probs=104.1
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa 281 (355)
+|+++++.++.+|+||+|+|+++|..+.+..+.+++.....++|+++|+||+||++++....|.+++.... ..++.+|+
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~-~~ii~iSa 79 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG-IVVVFFSA 79 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC-CeEEEEEe
Confidence 47899999999999999999999999888899998876334799999999999998877778888887654 35677899
Q ss_pred cCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 282 NKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
.++.+ .++|+|.||||||||||+|.+...+.++..||+|++
T Consensus 80 ~~~~~---------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~ 120 (141)
T cd01857 80 LKENA---------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH 120 (141)
T ss_pred cCCCc---------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc
Confidence 87655 579999999999999999999999999999999944
No 16
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.89 E-value=4.1e-22 Score=173.76 Aligned_cols=141 Identities=35% Similarity=0.514 Sum_probs=111.6
Q ss_pred HHHHHHhhhc-CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454 202 IWGELYKVID-SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 202 i~~el~kvi~-~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS 280 (355)
+|+++.+.+. ++|+||+|+|+++|....+..+..++.. .++|+++|+||+|+++......|.... ......++.+|
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~iS 77 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIK-ESEGIPVVYVS 77 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHH-HhCCCcEEEEE
Confidence 3666766665 5999999999999887777777766643 479999999999998765555565332 22233467889
Q ss_pred ecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee-EEEEEE
Q 018454 281 INKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW-YWFYCQ 347 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT-~~~y~~ 347 (355)
++++.|+++|++.|.++++. ......+.+||.|||||||+||+|.+...+.++++||+| ..+++.
T Consensus 78 a~~~~gi~~L~~~l~~~~~~--~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~ 143 (156)
T cd01859 78 AKERLGTKILRRTIKELAKI--DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK 143 (156)
T ss_pred ccccccHHHHHHHHHHHHhh--cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE
Confidence 99999999999999988864 234577899999999999999999998889999999999 445544
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=4.6e-22 Score=198.48 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=121.8
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
..+.+|+..+++.||+||+|||++..+...+..+.++|+. .++|+|+|+||+|-...+. -...+-..+--.++.+
T Consensus 71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~---~~~efyslG~g~~~~I 145 (444)
T COG1160 71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE---LAYEFYSLGFGEPVPI 145 (444)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh---hHHHHHhcCCCCceEe
Confidence 6788999999999999999999999999999999999985 5799999999999763221 1122222233446788
Q ss_pred eecCCCChHHHHHHHHHHHh--hhcc----ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454 280 SINKSFGKGSLLSVLRQFAR--LKSD----KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG 353 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~--~~~~----~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~ 353 (355)
||.+|.|+++|++.+.+.++ +... ..+++|++||.||||||||+|+|++..++.|+++||||+|--.+.+.|=|
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG 225 (444)
T ss_pred ehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC
Confidence 99999999999999998863 1111 14699999999999999999999999999999999999887776666544
No 18
>PRK12289 GTPase RsgA; Reviewed
Probab=99.80 E-value=5.7e-19 Score=174.46 Aligned_cols=128 Identities=26% Similarity=0.296 Sum_probs=102.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi 287 (355)
.+.++|+||+|+|+.+|... ...+++++.. +..++|+|||+||+||++......|.+.+... ...+|.+|+.++.|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~-g~~v~~iSA~tg~GI 163 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQW-GYQPLFISVETGIGL 163 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhc-CCeEEEEEcCCCCCH
Confidence 48999999999999987532 3356777654 34689999999999999876667888877543 335678899999999
Q ss_pred HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC-------eeEEEEEEEee
Q 018454 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV-------VWYWFYCQLLF 350 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG-------tT~~~y~~l~~ 350 (355)
++|++.|.. .+ ++|+|.||||||||||+|++...+.|+++|| ||++ ++|+.
T Consensus 164 ~eL~~~L~~---------ki-~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~--~~l~~ 221 (352)
T PRK12289 164 EALLEQLRN---------KI-TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH--VELFE 221 (352)
T ss_pred HHHhhhhcc---------ce-EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce--eEEEE
Confidence 999888752 13 6899999999999999999999999999999 7755 34543
No 19
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.77 E-value=2.1e-18 Score=164.99 Aligned_cols=144 Identities=27% Similarity=0.287 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~ 275 (355)
+||+....+.+.+.+...|+||.|-|||-|++++.+.+.+++. .++-|+|+||+||.+.......++++..+.-..
T Consensus 30 pgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~ 105 (335)
T KOG2485|consen 30 PGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLES 105 (335)
T ss_pred chHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhcccc
Confidence 6788899999999999999999999999999999999988874 689999999999999766666666666553222
Q ss_pred EEEeeecC--CCChHHHHHHHHHHHhh----h-ccccceEEEEeecCCCChhHHHHHhhc-----cCccccCCCCCeeEE
Q 018454 276 AFHASINK--SFGKGSLLSVLRQFARL----K-SDKQAISVGFVGYPNVGKSSVINTLRT-----KNVILFFPASVVWYW 343 (355)
Q Consensus 276 ~f~vSa~~--~~Gi~~Ll~~L~q~~~~----~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~-----~~~~~vs~iPGtT~~ 343 (355)
.+..++.. ..++..++..+..+..+ . .......|+|||.||||||||||+++. .+.++|++.||.|+.
T Consensus 106 ~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~ 185 (335)
T KOG2485|consen 106 YIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRR 185 (335)
T ss_pred hhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceee
Confidence 22223333 23355555554433322 1 124678899999999999999999874 578999999999955
No 20
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.76 E-value=5.5e-18 Score=159.74 Aligned_cols=119 Identities=26% Similarity=0.259 Sum_probs=95.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
.+.++|.+++|+|+.+|..+.. .+++++.. +..+.++++|+||+||.+... ...|.+.+.. ....+|.+|++++.|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~~v~~~SAktg~g 110 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGYQVLMTSSKNQDG 110 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCCeEEEEecCCchh
Confidence 6889999999999999886543 46666653 236899999999999986433 3467776654 334577899999999
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
+++|++.|.+ ..++|+|.||||||||||+|++...+.|+++++
T Consensus 111 i~eLf~~l~~----------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~ 153 (245)
T TIGR00157 111 LKELIEALQN----------RISVFAGQSGVGKSSLINALDPSVKQQVNDISS 153 (245)
T ss_pred HHHHHhhhcC----------CEEEEECCCCCCHHHHHHHHhhhhhccccceec
Confidence 9999987752 245899999999999999999999999988875
No 21
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=6.6e-18 Score=172.92 Aligned_cols=146 Identities=23% Similarity=0.140 Sum_probs=110.8
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS 280 (355)
.+..++...+..+|+||+|+|++++....+..+..++.. .++|+|+|+||+|+..... .....+...+ ...+.+|
T Consensus 106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~-~~~~~iS 180 (472)
T PRK03003 106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGL-GEPHPVS 180 (472)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCC-CCeEEEE
Confidence 455666778899999999999999877666777777765 5799999999999864321 1111221111 2346899
Q ss_pred ecCCCChHHHHHHHHHHHhhhc-----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 281 INKSFGKGSLLSVLRQFARLKS-----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~~~-----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
|++|.|+++|++.|.+.++... ....+.|++||.||||||||||+|++...+.++++||+|++.+...+.+
T Consensus 181 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~ 256 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL 256 (472)
T ss_pred cCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE
Confidence 9999999999999887765421 1346899999999999999999999998888999999997655444443
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.4e-17 Score=165.91 Aligned_cols=146 Identities=21% Similarity=0.223 Sum_probs=115.2
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
..+..++...+..+|+||+|+|++++....+..+.+++.+ .++|+++|+||+|+....... .+ +.......+|.+
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~~lg~~~~~~v 140 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FYSLGFGEPIPI 140 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HHhcCCCCeEEE
Confidence 4566778888999999999999999887777788888876 579999999999997643211 11 222222346889
Q ss_pred eecCCCChHHHHHHHHHHHhhhc-----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 280 SINKSFGKGSLLSVLRQFARLKS-----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~-----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
||.++.|+++|++.+.+.++... ....++|+++|.||||||||+|+|++...+.++++||+|++.+...+.
T Consensus 141 Sa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~ 216 (429)
T TIGR03594 141 SAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE 216 (429)
T ss_pred eCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE
Confidence 99999999999999987765421 234588999999999999999999999999999999999776544443
No 23
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.3e-17 Score=165.44 Aligned_cols=146 Identities=22% Similarity=0.226 Sum_probs=111.0
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS 280 (355)
.+..++...+..+|+||+|+|++++....+..+.+++.. .++|+|+|+||+|+..... ...+.+ ......++.+|
T Consensus 69 ~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iS 143 (435)
T PRK00093 69 QIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEFY-SLGLGEPYPIS 143 (435)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHHH-hcCCCCCEEEE
Confidence 355666778899999999999999877777777778776 4799999999999765221 111222 11212357789
Q ss_pred ecCCCChHHHHHHHHHHHhhhc----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 281 INKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~~~----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
+.++.|+++|++.+.+...... +...+.|+++|.||||||||+|+|++...+.++++||+|++.+...+.+
T Consensus 144 a~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~ 218 (435)
T PRK00093 144 AEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER 218 (435)
T ss_pred eeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE
Confidence 9999999999999876433211 2357999999999999999999999999999999999997765554444
No 24
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=3.5e-17 Score=175.24 Aligned_cols=149 Identities=21% Similarity=0.156 Sum_probs=115.1
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
..+..++...+..+|+||+|+|+++.....+..+.+++.. .++|+|+|+||+|+...... ..+.+...+ ...|.+
T Consensus 342 ~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~lg~-~~~~~i 416 (712)
T PRK09518 342 SAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWKLGL-GEPYPI 416 (712)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHHcCC-CCeEEE
Confidence 4566778888999999999999998777767777777765 58999999999998653211 111111112 235788
Q ss_pred eecCCCChHHHHHHHHHHHhhhc-------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeec
Q 018454 280 SINKSFGKGSLLSVLRQFARLKS-------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYF 352 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~-------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~ 352 (355)
||.+|.|+++|++.|.+.++... ....++|+++|.||||||||||+|++.....+++.||||++.+...+.|-
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~ 496 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID 496 (712)
T ss_pred ECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC
Confidence 99999999999998887765421 12347999999999999999999999998889999999988877766654
Q ss_pred c
Q 018454 353 G 353 (355)
Q Consensus 353 ~ 353 (355)
|
T Consensus 497 ~ 497 (712)
T PRK09518 497 G 497 (712)
T ss_pred C
Confidence 4
No 25
>PRK12288 GTPase RsgA; Reviewed
Probab=99.70 E-value=1.5e-16 Score=157.12 Aligned_cols=119 Identities=26% Similarity=0.233 Sum_probs=92.7
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhCCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
-+++++|.+++|.+.. |..+ ...+++|+.. +..++|+++|+||+||++.. ....|...+... ...+|.+|+.+
T Consensus 116 ~iaANvD~vlIV~s~~-p~~s-~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g~~v~~vSA~t 192 (347)
T PRK12288 116 PIAANIDQIVIVSAVL-PELS-LNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-GYRVLMVSSHT 192 (347)
T ss_pred eEEEEccEEEEEEeCC-CCCC-HHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 3579999999888864 4433 2466777654 34578999999999998754 245666665443 34577889999
Q ss_pred CCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
+.|+++|++.|.. .+ ++|+|.||||||||||+|++...+.|+++|+
T Consensus 193 g~GideL~~~L~~---------ki-~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~ 238 (347)
T PRK12288 193 GEGLEELEAALTG---------RI-SIFVGQSGVGKSSLINALLPEAEILVGDVSD 238 (347)
T ss_pred CcCHHHHHHHHhh---------CC-EEEECCCCCCHHHHHHHhccccceeeccccC
Confidence 9999999988853 12 5899999999999999999999999999997
No 26
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.69 E-value=2e-16 Score=152.32 Aligned_cols=120 Identities=22% Similarity=0.156 Sum_probs=92.4
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.-++.++|++|+|+|+.+|..+ ...+++++.. ...++|+++|+||+||++......|...+.. ....++.+|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALA-LGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHh-CCCeEEEEECCCCc
Confidence 3468999999999999988722 3466666653 2357999999999999876444455554433 23456778999999
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS 338 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP 338 (355)
|+++|...|.. ..++|+|.+|||||||||+|++...+.++.++
T Consensus 151 gi~~L~~~L~~----------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~ 193 (287)
T cd01854 151 GLDELREYLKG----------KTSVLVGQSGVGKSTLINALLPDLDLATGEIS 193 (287)
T ss_pred cHHHHHhhhcc----------ceEEEECCCCCCHHHHHHHHhchhhcccccee
Confidence 99998887752 35799999999999999999998877777665
No 27
>PRK00098 GTPase RsgA; Reviewed
Probab=99.69 E-value=1.5e-16 Score=153.97 Aligned_cols=121 Identities=22% Similarity=0.216 Sum_probs=94.0
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+++++|++|+|+|+.+|.... ..+++++.. ...++|+++|+||+||.+ ......|...+... ...++.+|+.++
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~-~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g~~v~~vSA~~g 152 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFST-DLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAI-GYDVLELSAKEG 152 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 44689999999999999876442 234555532 236799999999999973 34445676666443 345678899999
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
.|+++|++.|. +..++|+|.||||||||||+|++...+.++++++
T Consensus 153 ~gi~~L~~~l~----------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 153 EGLDELKPLLA----------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred ccHHHHHhhcc----------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 99999888763 2357899999999999999999999899999986
No 28
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=132.91 Aligned_cols=119 Identities=24% Similarity=0.222 Sum_probs=92.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHH--HHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATK--GWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~--~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+.+.|-+|+|+-+.+|..+ ...|++||.- +..+...|+|+||+||++..... .+...+.. .+..++.+|++++.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-~gy~v~~~s~~~~~ 153 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFN-TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYED-IGYPVLFVSAKNGD 153 (301)
T ss_pred cccccceEEEEEeccCCCCC-HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHh-CCeeEEEecCcCcc
Confidence 45668888999999988755 3467788764 56789999999999999876554 34444433 34556778999999
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
|+++|...|. ..++ .|+|.+|||||||||+|.+.....|+.|.+
T Consensus 154 ~~~~l~~~l~---------~~~s-vl~GqSGVGKSSLiN~L~p~~~~~t~eIS~ 197 (301)
T COG1162 154 GLEELAELLA---------GKIT-VLLGQSGVGKSTLINALLPELNQKTGEISE 197 (301)
T ss_pred cHHHHHHHhc---------CCeE-EEECCCCCcHHHHHHhhCchhhhhhhhhcc
Confidence 9999888875 2344 699999999999999999988888888864
No 29
>PRK01889 GTPase RsgA; Reviewed
Probab=99.48 E-value=2.2e-13 Score=135.09 Aligned_cols=117 Identities=21% Similarity=0.167 Sum_probs=87.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
+++++|.|++|+++. |.. ....++++|.. +..+.+.+||+||+||++... ...|...+ .....+|.+|+.++.|
T Consensus 109 iaANvD~vliV~s~~-p~~-~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 109 IAANVDTVFIVCSLN-HDF-NLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEEeCCEEEEEEecC-CCC-ChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 579999999999995 432 23467777664 446889999999999997521 22333333 1224567789999999
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS 338 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP 338 (355)
+++|.+.|. .+-.++|+|.||||||||||+|.+.....++.++
T Consensus 185 l~~L~~~L~---------~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~ 227 (356)
T PRK01889 185 LDVLAAWLS---------GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVR 227 (356)
T ss_pred HHHHHHHhh---------cCCEEEEECCCCccHHHHHHHHHHhcccceeeEE
Confidence 999888874 2346799999999999999999997777777665
No 30
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=99.23 E-value=1.1e-11 Score=125.76 Aligned_cols=155 Identities=16% Similarity=0.126 Sum_probs=111.3
Q ss_pred hhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh
Q 018454 161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~ 240 (355)
..|.+|..+.|++..+.+......|.+. .-+..++-.++..|+|..|.+.+..+.+...+.
T Consensus 76 ~~cpgc~~l~~~~~~~~~~v~~~~y~k~-----------------~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~-- 136 (572)
T KOG1249|consen 76 IVCPGCGFLEHMRAALAVPVVPGEYKKE-----------------KSEKQENPALARKVVDLSDEPCSIDPLLTNDVG-- 136 (572)
T ss_pred ccCCcchHHHHhhhhccCccChhhhhhh-----------------hhhhhhcccceEEeeecccCccccccchhhccc--
Confidence 3699999999999877665555555432 122334456788899999888887777777764
Q ss_pred cCCCcEEEEEeccCCCChhhHHHHHHHHhh--------------hCCce----EEEeeecCCCChHHHHHHHHHHHhhhc
Q 018454 241 CKHKHMILLLNKCDLVPAWATKGWLRVLSK--------------EYPSL----AFHASINKSFGKGSLLSVLRQFARLKS 302 (355)
Q Consensus 241 ~~~k~vILVlNK~DLvp~~~~~~w~~~l~~--------------~~p~~----~f~vSa~~~~Gi~~Ll~~L~q~~~~~~ 302 (355)
...+++++||+||+|.....-...++.. .+|.. +..+|++++.|+++|+-.|......
T Consensus 137 --~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df-- 212 (572)
T KOG1249|consen 137 --SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDF-- 212 (572)
T ss_pred --CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheeec--
Confidence 3458999999999997652111111111 12211 2246889999999999999876642
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccCcc-----------ccCCCCCee
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVI-----------LFFPASVVW 341 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-----------~vs~iPGtT 341 (355)
..+++++|+.||||||++|+|+..+.| +++++||||
T Consensus 213 ---~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTt 259 (572)
T KOG1249|consen 213 ---RGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTT 259 (572)
T ss_pred ---cCceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccc
Confidence 356899999999999999999987644 789999998
No 31
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.01 E-value=4.7e-10 Score=113.06 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=42.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
+.++++.++|.||||||||+|+|+++..+.|++|||||||.--.-+.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~ 261 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN 261 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE
Confidence 57899999999999999999999999999999999999886544443
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=8e-09 Score=104.03 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=104.4
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHhhhCC----ce
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSKEYP----SL 275 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~~~~p----~~ 275 (355)
...++.+.|+.||+|++|+||..|....+..+..++.+ .++++|+|+||+|++.. ...+.+...+...++ ..
T Consensus 250 Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~ 327 (444)
T COG1160 250 SVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAP 327 (444)
T ss_pred eehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCe
Confidence 34678889999999999999999999999999999876 68999999999999986 445666666666544 44
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCcccc-CCCC-Cee-EEEEEEEeee
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILF-FPAS-VVW-YWFYCQLLFY 351 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v-s~iP-GtT-~~~y~~l~~~ 351 (355)
++++||+++.|++.|++.+.+......- .+ .+|++|..+......- .|+. |.. +-.|.+...+
T Consensus 328 i~~iSA~~~~~i~~l~~~i~~~~~~~~~--ri-----------~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~ 393 (444)
T COG1160 328 IVFISALTGQGLDKLFEAIKEIYECATR--RI-----------STSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVST 393 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHhcc--cc-----------CHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCC
Confidence 6788999999999999998877654332 22 2889999887654443 2333 666 8888876654
No 33
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.91 E-value=1.1e-08 Score=91.90 Aligned_cols=101 Identities=24% Similarity=0.263 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEY 272 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~ 272 (355)
+||. .+..++...+..+|++|+|+|+.++...........+.. .+.|+|+|+||+|++... ..+++...+.+.+
T Consensus 78 PG~~-~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 78 PGHE-DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp SSSH-HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHT
T ss_pred cccc-ceeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhcccc
Confidence 5663 467778888999999999999998876655555555554 578999999999998432 1233333332221
Q ss_pred ------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 273 ------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 273 ------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
...++++|+.+|+|+++|++.|.+++|
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 235788999999999999999988764
No 34
>COG1159 Era GTPase [General function prediction only]
Probab=98.88 E-value=1.5e-08 Score=97.22 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=85.1
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC-ceEE
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP-SLAF 277 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p-~~~f 277 (355)
+.+.+.+++.+..+|+|++|+|+.++.+..+..+.+.++. .+.|+|+++||+|.++... .....+.+....+ ..++
T Consensus 73 ~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~iv 150 (298)
T COG1159 73 ELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIV 150 (298)
T ss_pred HHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEE
Confidence 4677899999999999999999999999988888888875 4689999999999998765 4566666666655 3678
Q ss_pred EeeecCCCChHHHHHHHHHHHhhh
Q 018454 278 HASINKSFGKGSLLSVLRQFARLK 301 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~~~ 301 (355)
.+||+++.|++.|++.+..++++.
T Consensus 151 piSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 151 PISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred EeeccccCCHHHHHHHHHHhCCCC
Confidence 899999999999999999998864
No 35
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.88 E-value=1.8e-08 Score=96.08 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=72.5
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEe
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHA 279 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~v 279 (355)
.+.+.+...+..+|+|++|+|+.++.... ..+...+.. .++|+++|+||+|+++......+...+....+ ..+|.+
T Consensus 68 ~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~i 144 (270)
T TIGR00436 68 LMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPI 144 (270)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEE
Confidence 35566778899999999999999865432 445555544 57899999999999865544444444443333 257889
Q ss_pred eecCCCChHHHHHHHHHHHhh
Q 018454 280 SINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
||++|.|+++|++.|.++++.
T Consensus 145 SA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 145 SALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ecCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999998864
No 36
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.85 E-value=3.3e-08 Score=84.06 Aligned_cols=93 Identities=22% Similarity=0.257 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
..++++....+..+|++++|+|++++.......+.+++.. .+.|+++|+||+|+.+.... ...+.......++.+
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 138 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPI 138 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEE
Confidence 4566677778899999999999998877767677777765 46999999999999876543 122222222356789
Q ss_pred eecCCCChHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~ 297 (355)
|++++.|+++|++.|.+.
T Consensus 139 Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 139 SAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ecccCCCHHHHHHHHHhh
Confidence 999999999999988653
No 37
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.5e-09 Score=107.12 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=44.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG 353 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~ 353 (355)
+.++.|+++|.||||||||+|+|.++.+..|||+||||||---+.+..-|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC
Confidence 46799999999999999999999999999999999999887666665544
No 38
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.77 E-value=4.1e-08 Score=85.53 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCceEEE
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFH 278 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~~~f~ 278 (355)
.+++..+.....++|+|++|.|+.++....++.+...+ ++|+|-|+||+|+.+ ....+.-.+.|...+...+|.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~ 125 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFE 125 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEE
Confidence 67888888899999999999999999988888887665 589999999999983 333444445565555566799
Q ss_pred eeecCCCChHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLR 295 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~ 295 (355)
+|+.++.|+++|.++|+
T Consensus 126 vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 126 VSAVTGEGIEELKDYLE 142 (143)
T ss_pred EECCCCcCHHHHHHHHh
Confidence 99999999999999885
No 39
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.75 E-value=9.3e-08 Score=82.22 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=68.9
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHhhhCC----ceEEE
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSKEYP----SLAFH 278 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~~~~p----~~~f~ 278 (355)
.....+..+|++++|+|+.++.......+..++.. .++|+++|+||+|+.+. .....+.+.+....+ ..++.
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 34456789999999999999877655555555543 47899999999999876 445555666655443 45788
Q ss_pred eeecCCCChHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~ 297 (355)
+|++++.|+.++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 8999999999999988754
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.74 E-value=1.7e-07 Score=94.48 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=87.2
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhC----CceEEE
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEY----PSLAFH 278 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~----p~~~f~ 278 (355)
.+....+..+|++|+|+|+.++....+..+...+.. .++|+|+|+||+||+ .........+.+.... ...++.
T Consensus 246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 445668899999999999999877766666666654 579999999999998 4444444445554432 245678
Q ss_pred eeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCcccc-CCC-CCee-EEEEEE
Q 018454 279 ASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILF-FPA-SVVW-YWFYCQ 347 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v-s~i-PGtT-~~~y~~ 347 (355)
+||++|.|+++|++.+.........+ + .++.+|.++....... .|. -|.. +..|++
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~~~--i-----------~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~ 382 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENANRR--I-----------STSKLNRVLEEAVAAHPPPLVNGRRLKIKYAT 382 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcCc--C-----------CHHHHHHHHHHHHHcCCCCCCCCceeeEEEEE
Confidence 99999999999999988766432211 1 3567777775432221 222 2444 677765
No 41
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.74 E-value=8.7e-08 Score=81.22 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=59.8
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHH-HhhhCCceEEEeee
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRV-LSKEYPSLAFHASI 281 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~-l~~~~p~~~f~vSa 281 (355)
++.+...+..+|++|+|+|+.++.......+... ..+|+|+|+||+||.+.....+.... +.......+|.+|+
T Consensus 53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 53 YSALIVTAADADVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEec
Confidence 4444456899999999999999887655433332 23599999999999764322222222 22222234678899
Q ss_pred cCCCChHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLR 295 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~ 295 (355)
+++.|+++|++.|.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999988763
No 42
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.72 E-value=5.4e-08 Score=84.43 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=65.8
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCC-CC-cchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhC-CceE
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQ-GT-RCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEY-PSLA 276 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~-~s-~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~-p~~~ 276 (355)
....++.+..+|++|+|+|+.++. .. ....+.+.+... ..++|+++|+||+|+.+......|...+.... ...+
T Consensus 69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV 148 (170)
T ss_pred hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence 344555677899999999999872 21 112233333321 13689999999999988766666666554442 4457
Q ss_pred EEeeecCCCChHHHHHHHHHH
Q 018454 277 FHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
+.+|++++.|+++|++.|.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 788999999999999988654
No 43
>PRK00089 era GTPase Era; Reviewed
Probab=98.70 E-value=1.5e-07 Score=90.28 Aligned_cols=98 Identities=24% Similarity=0.240 Sum_probs=75.0
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCC-ceEEE
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYP-SLAFH 278 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p-~~~f~ 278 (355)
.+...+...+..+|++++|+|+.++.......+.+.+.. .++|+++|+||+|++ +........+.+...++ ..+|.
T Consensus 73 ~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~ 150 (292)
T PRK00089 73 AMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVP 150 (292)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 345566778899999999999998666555556555553 468999999999999 44555556666655444 45788
Q ss_pred eeecCCCChHHHHHHHHHHHhh
Q 018454 279 ASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+|++++.|+++|++.|.++++.
T Consensus 151 iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 151 ISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred ecCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999988754
No 44
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.69 E-value=2e-07 Score=79.92 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=62.9
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhhh--CCc
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKE--YPS 274 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~--~p~ 274 (355)
++...+...+..+|++|+|+|+++............+.. ...+|+++|+||+|+.+... ..++.+.+... ...
T Consensus 63 ~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04171 63 KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADA 141 (164)
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCC
Confidence 344556667889999999999987543322222223322 12359999999999986532 23344444432 235
Q ss_pred eEEEeeecCCCChHHHHHHHHH
Q 018454 275 LAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
.++.+|++++.|+++|++.|..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 142 PIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEeCCCCcCHHHHHHHHhh
Confidence 6788999999999999988753
No 45
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.69 E-value=3.4e-07 Score=92.69 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=87.9
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEe
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA 279 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~v 279 (355)
......+..+|++|+|+|+.++....+..+..++.. .++|+|+|+||+|+++......+.+.+.... ...++.+
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 455678899999999999999887776666666654 4799999999999986654455555554432 2456788
Q ss_pred eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC---Cee-EEEEEE
Q 018454 280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS---VVW-YWFYCQ 347 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP---GtT-~~~y~~ 347 (355)
||+++.|+++|++.+.+.......+ + .++.+|.++....... |-| |.. +..|++
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~~~~--i-----------~t~~ln~~l~~~~~~~-~~p~~~~~~~k~~~~~ 382 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENANRR--I-----------STSVLNRVLEEAVERH-PPPLVKGRRLKIKYAT 382 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcCc--C-----------ChHHHHHHHHHHHHcC-CCCCCCCeeeeEEEEE
Confidence 9999999999999987765432211 1 2566777776432222 223 433 666665
No 46
>PRK15494 era GTPase Era; Provisional
Probab=98.67 E-value=1.4e-07 Score=93.24 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=72.1
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEe
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHA 279 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~v 279 (355)
.+.+.++..+..+|+||+|+|+.++.......+...+.. .+.|+|+|+||+||.... .....+.+....+ ..+|.+
T Consensus 120 ~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 120 AMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEE
Confidence 456667778899999999999988765544445555543 467889999999997542 3334444444443 467889
Q ss_pred eecCCCChHHHHHHHHHHHhh
Q 018454 280 SINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
||++|.|+++|++.|.+.+++
T Consensus 197 SAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred eccCccCHHHHHHHHHHhCCC
Confidence 999999999999999988875
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.66 E-value=3.1e-07 Score=94.47 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=85.6
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~~~~p~~~f~vSa~ 282 (355)
...+..+|++|+|+|+.++....+..+...+.. .++|+|+|+||+||++...... ....+.......++.+||+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 346789999999999999876655555555544 5799999999999986432211 1122222122346778999
Q ss_pred CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCC-C-CCee-EEEEEEEe
Q 018454 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-A-SVVW-YWFYCQLL 349 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~-i-PGtT-~~~y~~l~ 349 (355)
+|.|+++|++.+.+....... .| .++.+|.++........| . -|.. +-.|+|-+
T Consensus 366 ~g~gv~~lf~~i~~~~~~~~~----~i---------~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~ 422 (472)
T PRK03003 366 TGRAVDKLVPALETALESWDT----RI---------PTGRLNAWLGELVAATPPPVRGGKQPRILFATQA 422 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhcc----cC---------CHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECC
Confidence 999999999999877653221 21 378889888765433332 1 2555 78887743
No 48
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.65 E-value=2.4e-07 Score=86.34 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHhhhc--CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHh
Q 018454 196 KGQSKRIWGELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~--~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~ 269 (355)
+|+ .++.+.+...+. .+|++++|+|+.+++...+..+..++.. .++|+++|+||+|+++...... +.+.+.
T Consensus 92 pG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 92 AGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKIDLAPANILQETLKDLKRILK 168 (224)
T ss_pred CCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECccccCHHHHHHHHHHHHHHhc
Confidence 454 344555565564 6899999999998877666667777665 5799999999999987654333 333332
Q ss_pred hh-------------------------CCceEEEeeecCCCChHHHHHHHHHH
Q 018454 270 KE-------------------------YPSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 270 ~~-------------------------~p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
.. .-..+|.+|+.+|.|++.|.+.|..+
T Consensus 169 ~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 169 VPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred CCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 10 01257788999999999999988754
No 49
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.65 E-value=3.1e-07 Score=83.75 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh---
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE--- 271 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~--- 271 (355)
+|+ .++.......+..+|++|+|+|+.++. ..........+.. ....|+|+|+||+||+.........+.+...
T Consensus 91 PG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~ 168 (203)
T cd01888 91 PGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKG 168 (203)
T ss_pred CCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhc
Confidence 444 456777788889999999999999852 2222223333322 2235789999999998754322222222221
Q ss_pred ---CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 272 ---YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 272 ---~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
....+|.+||+++.|+++|++.|.+.++
T Consensus 169 ~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 169 TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 1345788899999999999999987654
No 50
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.64 E-value=3.5e-07 Score=77.63 Aligned_cols=92 Identities=27% Similarity=0.320 Sum_probs=71.8
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCC-ceEEEeee
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYP-SLAFHASI 281 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p-~~~f~vSa 281 (355)
......+..+|++++|+|+.++.......+...+.. .+.|+++|+||+|+. .......+...+....+ ..++.+|+
T Consensus 74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence 344567889999999999999865555566666654 358999999999998 45556677777776664 56788899
Q ss_pred cCCCChHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQF 297 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~ 297 (355)
+++.|+++|++.|.++
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999998764
No 51
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.63 E-value=1.1e-07 Score=84.62 Aligned_cols=67 Identities=25% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 262 KGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 262 ~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
++|.+.+... ...++.+|++++.|+++|.+.|.. -.+.|+|.+|||||||||+|++.....|+.+..
T Consensus 2 ~~~~~~y~~~-gy~v~~~S~~~~~g~~~l~~~l~~----------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~ 68 (161)
T PF03193_consen 2 EELLEQYEKL-GYPVFFISAKTGEGIEELKELLKG----------KTSVLLGQSGVGKSSLINALLPEAKQKTGEISE 68 (161)
T ss_dssp HHHHHHHHHT-TSEEEE-BTTTTTTHHHHHHHHTT----------SEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred HHHHHHHHHc-CCcEEEEeCCCCcCHHHHHHHhcC----------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence 4566777654 334677899999999998888752 345899999999999999999988888877753
No 52
>COG2262 HflX GTPases [General function prediction only]
Probab=98.62 E-value=1.7e-07 Score=93.35 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p 273 (355)
|.+....++.+.+.+..+|++|||||+.||....- ....+.|.+ ...++|+|+|+||+|+++.... ...+....|
T Consensus 255 P~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~ 331 (411)
T COG2262 255 PHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP 331 (411)
T ss_pred ChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC
Confidence 56667888999999999999999999999943221 223334443 2356899999999999976642 222222234
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCC
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVG 318 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVG 318 (355)
.++.+||.++.|++.|.+.|...+.... .... ..+.+.+.|
T Consensus 332 -~~v~iSA~~~~gl~~L~~~i~~~l~~~~--~~~~-l~lp~~~~~ 372 (411)
T COG2262 332 -NPVFISAKTGEGLDLLRERIIELLSGLR--TEVT-LELPYTDAG 372 (411)
T ss_pred -CeEEEEeccCcCHHHHHHHHHHHhhhcc--cceE-EEcCccccc
Confidence 5677899999999999999988776322 2223 455666777
No 53
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.61 E-value=1.9e-07 Score=91.93 Aligned_cols=97 Identities=24% Similarity=0.271 Sum_probs=69.1
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcc----hHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCc
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRC----HHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS 274 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~----~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~ 274 (355)
+..+.++.++.+|++|+|+|+.+...+.. ..+.+.+... ..++|+++|+||+||.+......+.+.+.+....
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK 304 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence 44566677899999999999987532111 1222223221 2468999999999998776555666666555455
Q ss_pred eEEEeeecCCCChHHHHHHHHHHH
Q 018454 275 LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.++.+||+++.|+++|++.|.+.+
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHHHh
Confidence 678899999999999999987654
No 54
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.61 E-value=3.6e-07 Score=80.23 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=65.4
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH---H-HHHHhhh--------
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG---W-LRVLSKE-------- 271 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~---w-~~~l~~~-------- 271 (355)
......+..+|.+++|+|+.++.......+..++.. .++|+++|+||+|+........ + .+.+...
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 334456779999999999998765544444444443 5799999999999987432222 2 2222221
Q ss_pred -----CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 272 -----YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 272 -----~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
....+|.+|++++.|++++++.|.+.++
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2345678999999999999999987653
No 55
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.60 E-value=4.1e-08 Score=81.06 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=33.1
Q ss_pred EEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
+|+|+|.||||||||||+|.+.+.+.+++.||+|++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~ 36 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRD 36 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceee
Confidence 479999999999999999999888999999999844
No 56
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.60 E-value=3.5e-07 Score=78.12 Aligned_cols=84 Identities=24% Similarity=0.190 Sum_probs=61.4
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
+.+|++|+|+|+.++.. ...+...+.. .++|+++|+||+|+.+......+...+.......++.+|+.++.|+.+|
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDEL 148 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHH
Confidence 68999999999987643 2233333333 4799999999999986544444444554444556788999999999999
Q ss_pred HHHHHHHH
Q 018454 291 LSVLRQFA 298 (355)
Q Consensus 291 l~~L~q~~ 298 (355)
++.|.++.
T Consensus 149 ~~~l~~~~ 156 (158)
T cd01879 149 KDAIAELA 156 (158)
T ss_pred HHHHHHHh
Confidence 99987654
No 57
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.59 E-value=3.1e-07 Score=90.69 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=67.7
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCce
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSL 275 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~ 275 (355)
.+..+.++.++.+|++|+|+|+.++.... ...+...|... ..++|+|+|+||+||.+... .....+.+.......
T Consensus 225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~ 304 (335)
T PRK12299 225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP 304 (335)
T ss_pred cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC
Confidence 35567777899999999999998765211 12233333321 13689999999999986543 222222222233455
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhh
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+|.+||+++.|+++|++.|.+.+..
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999999887754
No 58
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.58 E-value=4.8e-07 Score=79.40 Aligned_cols=92 Identities=21% Similarity=0.158 Sum_probs=60.5
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEee
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vS 280 (355)
......+..+|++|+|+|+.++...........+.. .++|+++|+||+|+..... ...+.+.+. ..+..+|.+|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADPERVKQQIEDVLG-LDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-CCcccEEEee
Confidence 344456778999999999998654433222222222 4789999999999864321 122222221 1123468899
Q ss_pred ecCCCChHHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~ 298 (355)
|++|.|+++|++.|.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999987654
No 59
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.57 E-value=6.2e-07 Score=80.60 Aligned_cols=97 Identities=21% Similarity=0.146 Sum_probs=65.9
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhhh-----
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKE----- 271 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~----- 271 (355)
.+++..+..+..+|.+++|+|+.+...........+... .+.|+++|+||+|++.... .+.+.+.+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466777777889999999999987653322222222221 3689999999999985432 23333333221
Q ss_pred -CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 272 -YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 272 -~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
....++.+|++++.|+++|++.|....+
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 2345788999999999999999986553
No 60
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.56 E-value=5.6e-07 Score=78.97 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEe
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHA 279 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~v 279 (355)
+..+.+...+..+|++|+|+|+.++.......+... ..++|+++|+||+|+... ....+.+.+.+... ..+|.+
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~ 127 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFEL 127 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEE
Confidence 345566667899999999999998765444333322 246899999999998543 23333333333322 357788
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
|++++.|+++|++.|.+...
T Consensus 128 Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 128 NSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ECCCccCHHHHHHHHHHhch
Confidence 99999999999999987763
No 61
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.55 E-value=4.1e-07 Score=78.86 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH
Q 018454 213 SDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS 289 (355)
Q Consensus 213 sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~ 289 (355)
+|++|+|+|+.++...... .+...+.....+.|+|+|+||+|+........ ...+.......+|.+||+++.|+++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCCHHH
Confidence 5899999999887542111 23334443224789999999999986544332 2223332334577899999999999
Q ss_pred HHHHHHHH
Q 018454 290 LLSVLRQF 297 (355)
Q Consensus 290 Ll~~L~q~ 297 (355)
|++.|...
T Consensus 159 l~~~l~~~ 166 (168)
T cd01897 159 VKNKACEL 166 (168)
T ss_pred HHHHHHHH
Confidence 99988654
No 62
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.53 E-value=1e-07 Score=87.07 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=34.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT 341 (355)
....|+|+|.+|||||||||+|.+.+ .+.||..||.|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrT 60 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT 60 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCcc
Confidence 56789999999999999999999955 69999999999
No 63
>PRK09866 hypothetical protein; Provisional
Probab=98.50 E-value=9e-07 Score=93.14 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh-----hhHHHHHHH-Hhh-hC-C
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA-----WATKGWLRV-LSK-EY-P 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~-----~~~~~w~~~-l~~-~~-p 273 (355)
+-+.+.+.+..+|+||+|+|+..+.+..+..+.+.+.+...+.|+++|+||+|+... .....++.. +.. .. +
T Consensus 248 L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f 327 (741)
T PRK09866 248 LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITP 327 (741)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 333444579999999999999988777777888888763222599999999999752 223333332 221 22 3
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+|++||++|.|++.|++.|.+.-
T Consensus 328 ~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 328 QQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 5688999999999999999988743
No 64
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.50 E-value=7e-07 Score=88.69 Aligned_cols=92 Identities=23% Similarity=0.322 Sum_probs=63.6
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEE
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFH 278 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~ 278 (355)
..++.+.+.+..+|+||+|+|+.+|..... ..+..++... ..++|+|+|+||+|+.+...... +...+ ..++.
T Consensus 257 e~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~~-~~~i~ 331 (351)
T TIGR03156 257 AAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEGY-PEAVF 331 (351)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhCC-CCEEE
Confidence 445667778899999999999998864322 2223444432 23789999999999986533221 11112 23578
Q ss_pred eeecCCCChHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~ 297 (355)
+||+++.|+++|++.|.+.
T Consensus 332 iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEccCCCCHHHHHHHHHhh
Confidence 8999999999999988653
No 65
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.49 E-value=2.8e-07 Score=94.16 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=41.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
+.+++|.++|.||||||||+|+|.+.....++++||||++.+..-+.+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~ 248 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL 248 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE
Confidence 467899999999999999999999998889999999998876555444
No 66
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.49 E-value=4.5e-07 Score=91.80 Aligned_cols=112 Identities=24% Similarity=0.203 Sum_probs=78.7
Q ss_pred CcchhhhhhhhccccchHH----HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 182 GDGFRDLVRHTMFEKGQSK----RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 182 ~~~~~~~~~~~~f~~~~s~----ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
.+|++-.+-++...+.+.- -=+++.++.+++||+||+|+|+..|....+..+...+. .++|+++|+||+||.+
T Consensus 262 i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 262 LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVS 338 (454)
T ss_pred ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhccc
Confidence 3455444445555543221 12478899999999999999999987666666655232 5799999999999998
Q ss_pred hhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 258 AWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 258 ~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
....... .+. .....+.+|++++.|++.|.+.|.++...
T Consensus 339 ~~~~~~~--~~~--~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 339 KIELESE--KLA--NGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred ccccchh--hcc--CCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 7643322 111 12235678999999999999999988753
No 67
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.48 E-value=1.3e-06 Score=78.93 Aligned_cols=91 Identities=26% Similarity=0.344 Sum_probs=63.1
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEee
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vS 280 (355)
+......+..+|++++|+|+.++..... ..+.+++.. ...++|+++|+||+|+.+..... ..+. .....++.+|
T Consensus 111 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~-~~~~~~~~~S 186 (204)
T cd01878 111 FRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE-AGRPDAVFIS 186 (204)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh-cCCCceEEEE
Confidence 3444455778999999999998865432 233444443 12468999999999998765433 2222 2334577899
Q ss_pred ecCCCChHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQF 297 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~ 297 (355)
++++.|++++++.|.+.
T Consensus 187 a~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 187 AKTGEGLDELLEAIEEL 203 (204)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999988653
No 68
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.47 E-value=9.2e-07 Score=74.96 Aligned_cols=86 Identities=24% Similarity=0.227 Sum_probs=63.4
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
+...+..+..+|++++|+|+.++....+..+... ..++|+++|+||+|+.+.... .........+.+|++
T Consensus 71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~------~~~~~~~~~~~~Sa~ 140 (157)
T cd04164 71 IERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL------LSLLAGKPIIAISAK 140 (157)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc------ccccCCCceEEEECC
Confidence 4456667789999999999998776555444332 257999999999999875533 112222446788999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 141 ~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 141 TGEGLDELKEALLELA 156 (157)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999987653
No 69
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.46 E-value=1.3e-06 Score=90.35 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCc-----chHHHHHHHh------------hcCCCcEEEEEeccCCCChhhHHH
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTR-----CHHLERHLKE------------HCKHKHMILLLNKCDLVPAWATKG 263 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~-----~~~l~~~L~~------------~~~~k~vILVlNK~DLvp~~~~~~ 263 (355)
.+..+.++.++++|+||+|+|+.+....+ ...+...|.. ...++|.|+|+||+||........
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e 304 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE 304 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH
Confidence 34456677889999999999997532111 1122222221 114689999999999975443333
Q ss_pred HH-HHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 264 WL-RVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 264 w~-~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+. ..+.. ....+|.+||.++.|+++|+..|.+.+..
T Consensus 305 ~l~~~l~~-~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 305 FVRPELEA-RGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHHH-cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 32 23332 34567889999999999999999887754
No 70
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.46 E-value=1.5e-06 Score=72.43 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=65.7
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHH---HHhhh-CCceEEEe
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR---VLSKE-YPSLAFHA 279 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~---~l~~~-~p~~~f~v 279 (355)
..+...+..+|++++|+|+.++.......+..... ..+.|+++|+||+|+++......+.. ..... ....++.+
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEKLLELLR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAV 144 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEE
Confidence 45556778899999999999887655444233332 25899999999999998765555532 12122 23456778
Q ss_pred eecCCCChHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~ 297 (355)
|+.++.|++++++.|.+.
T Consensus 145 sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 145 SALTGEGIDELREALIEA 162 (163)
T ss_pred eeeccCCHHHHHHHHHhh
Confidence 999999999999988754
No 71
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.45 E-value=2.4e-06 Score=92.26 Aligned_cols=125 Identities=14% Similarity=0.211 Sum_probs=82.1
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~vSa~ 282 (355)
...+..+|++|+|+|+.++....+..+...+.. .++|+|+|+||+||++..........+...+ ...++.+||+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 456789999999999998876655555555543 5799999999999987543333333333221 2345778999
Q ss_pred CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC---Cee-EEEEEE
Q 018454 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS---VVW-YWFYCQ 347 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP---GtT-~~~y~~ 347 (355)
+|.|+++|++.+.+.......+ + .++.+|..+...... .|-| |.. +-.|+|
T Consensus 605 tg~gv~~L~~~i~~~~~~~~~~--i-----------~T~~Ln~~l~~~~~~-~~~p~~~g~~~ki~y~~ 659 (712)
T PRK09518 605 TGWHTNRLAPAMQEALESWDQR--I-----------PTGKLNAFLGKIQAE-HPHPLRGGKQPRILFAT 659 (712)
T ss_pred CCCCHHHHHHHHHHHHHHhccc--C-----------ChHHHHHHHHHHHhh-CCCCccCCeeeeEEEEE
Confidence 9999999999998877532211 1 144667777543322 2222 444 677765
No 72
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.43 E-value=7e-07 Score=77.58 Aligned_cols=94 Identities=23% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCC-----CCcc--hHHHHHHHhh--------cCCCcEEEEEeccCCCChhhHHHHHH-
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQ-----GTRC--HHLERHLKEH--------CKHKHMILLLNKCDLVPAWATKGWLR- 266 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~-----~s~~--~~l~~~L~~~--------~~~k~vILVlNK~DLvp~~~~~~w~~- 266 (355)
+.+.+..+..+|+|++|+|+.++. .... ..+...+... ..++|+++|+||+|+........|..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 144 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVR 144 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHH
Confidence 345556678899999999999874 1111 1122222211 13689999999999987665555521
Q ss_pred HHhhhCCceEEEeeecCCCChHHHHHHHHH
Q 018454 267 VLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 267 ~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
.........++.+|++++.|+++|++.|..
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 145 ELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 111223345778899999999999988754
No 73
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.41 E-value=4.5e-07 Score=92.81 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=40.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
+.+++|+++|+||||||||+|+|.+.....++++||+|++.+..-+.+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~ 260 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL 260 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE
Confidence 356899999999999999999999998888999999997766544433
No 74
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.41 E-value=8.3e-07 Score=76.32 Aligned_cols=89 Identities=24% Similarity=0.224 Sum_probs=56.1
Q ss_pred hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh-----hhCCceEEEe
Q 018454 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHA 279 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~~~p~~~f~v 279 (355)
..+..+|++|+|+|+.++... ....+...+.. ...+.|+++|+||+|+............+. ......++.+
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEec
Confidence 357889999999999987521 11122222221 124789999999999854322222222221 1112346778
Q ss_pred eecCCCChHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q 296 (355)
||+++.|++++++.|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998753
No 75
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.41 E-value=1.3e-06 Score=74.97 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=57.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~ 278 (355)
..+..+|.+|+|+|+.++.... ...+..++.. ...+.|+++|+||+|+.+......+...+.. ..+..+|.
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEE
Confidence 3568899999999999875321 1122222221 0146899999999999764333333333321 12345678
Q ss_pred eeecCCCChHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLR 295 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~ 295 (355)
+||+++.|++++++.|.
T Consensus 144 ~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 144 SNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eeCCCCCchHHHHHHHh
Confidence 99999999999999875
No 76
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.40 E-value=1.4e-06 Score=76.06 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=61.4
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH---HHHHHHHhhhCC--ceEEEe
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT---KGWLRVLSKEYP--SLAFHA 279 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~---~~w~~~l~~~~p--~~~f~v 279 (355)
...+..+|++++|+|+.++..... ..+...+.....+.|+++|+||+||.+.... +.....+...+. ...+.+
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC 144 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence 345688999999999988764322 1233344433357899999999999865431 222222222222 246788
Q ss_pred eecCCCChHHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~ 298 (355)
||+++.|++++++.+.+.+
T Consensus 145 Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 9999999999999887654
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.39 E-value=2.3e-06 Score=74.17 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=59.3
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhC-CceEEE
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVP-AWATKGWLRVLSKEY-PSLAFH 278 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~-p~~~f~ 278 (355)
...+..+|.+|+|+|+.++..... ..+...+... ..++|+++|+||+|+.+ ......-...+.+.. ...+|.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE 146 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEE
Confidence 346788999999999988753211 1122222211 12789999999999983 221111222222233 356788
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+|+.+|.|++++++.|.+.+
T Consensus 147 ~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 147 TSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999887654
No 78
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.38 E-value=1.7e-06 Score=74.29 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=62.8
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEe
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~v 279 (355)
.+...+..+|++|+|+|+.++... ..+..++. . ...+.|+++|+||+|+... .........+........+.+
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIET 142 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEE
Confidence 344567899999999999876432 22333332 2 2125899999999999533 233344444544455667889
Q ss_pred eecCCCChHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~ 297 (355)
|++++.|+++|++.|.+.
T Consensus 143 Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 143 SAKAGHNVKELFRKIASA 160 (161)
T ss_pred eCCCCCCHHHHHHHHHHh
Confidence 999999999999998754
No 79
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.38 E-value=1.9e-06 Score=86.74 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=67.2
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCC----CcchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQG----TRCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP- 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~----s~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p- 273 (355)
+..+..+.++.+|+||+|+|+..... .....+.+.+... ..++|.|+|+||+|+............+.+..+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~ 306 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW 306 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC
Confidence 44555678999999999999873211 1112333333321 136899999999999876544444444444332
Q ss_pred -ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
..++.+||+++.|+++|++.|.++++.
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 246788999999999999999888764
No 80
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.38 E-value=2.5e-06 Score=74.20 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=60.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
..+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+.. ...... +...+....+.+|++++.|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~~~~~~~~Sa~~~~g 145 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKHNLPLYYVSAADGTN 145 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHcCCeEEEEeCCCCCC
Confidence 46789999999999987754221 22333333333579999999999996432 222222 2223345567889999999
Q ss_pred hHHHHHHHHHHH
Q 018454 287 KGSLLSVLRQFA 298 (355)
Q Consensus 287 i~~Ll~~L~q~~ 298 (355)
++++++.|.+..
T Consensus 146 v~~l~~~l~~~~ 157 (161)
T cd04124 146 VVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 81
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.36 E-value=2.9e-07 Score=92.67 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=36.7
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
..|+|||+||||||||||+|.+.+ ..++++|+||+.-...++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~ 203 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRV 203 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEe
Confidence 468999999999999999999876 58999999996655555543
No 82
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.36 E-value=1.7e-06 Score=74.69 Aligned_cols=88 Identities=20% Similarity=0.168 Sum_probs=56.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+...+.. ...++|+++|+||+|+.......+....+.... ...+|.+|
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTS 141 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 4578899999999998763211 1222222221 124789999999999975432233333332111 12478899
Q ss_pred ecCCCChHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLR 295 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~ 295 (355)
++++.|+++|++.|.
T Consensus 142 a~~~~gi~~l~~~l~ 156 (158)
T cd04151 142 AIKGEGLDEGMDWLV 156 (158)
T ss_pred ccCCCCHHHHHHHHh
Confidence 999999999998875
No 83
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.34 E-value=5.8e-07 Score=79.52 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=60.6
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS 289 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~ 289 (355)
.+..|+||+|+||... .++..+...+.+ .++|+|+|+||+|++......--.+.+++...+.++.+||.++.|+++
T Consensus 76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL--ERNLYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp HTSSSEEEEEEEGGGH--HHHHHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred hcCCCEEEEECCCCCH--HHHHHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 5789999999999874 344455555554 589999999999998765443334555555566688889999999999
Q ss_pred HHHHH
Q 018454 290 LLSVL 294 (355)
Q Consensus 290 Ll~~L 294 (355)
|.+.+
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98764
No 84
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.33 E-value=1.8e-06 Score=74.75 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=56.9
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------CCce
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------YPSL 275 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------~p~~ 275 (355)
...+..+|++|+|+|+.++.. . ..+..++.. ...+.|+++|+||+|+.+..........+... ....
T Consensus 68 ~~~~~~~~~~v~vvd~~~~~~-~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 68 DKYYAECHAIIYVIDSTDRER-F-EESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHHhCCCCEEEEEEECchHHH-H-HHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence 346789999999999987642 1 122222221 12478999999999986643222222222221 2345
Q ss_pred EEEeeecCCCChHHHHHHHH
Q 018454 276 AFHASINKSFGKGSLLSVLR 295 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~ 295 (355)
++.+||+++.|++++++.|.
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHh
Confidence 78899999999999998874
No 85
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.33 E-value=5.9e-06 Score=73.64 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=64.9
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHH----HHHhhhCCceEEEeee
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWL----RVLSKEYPSLAFHASI 281 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~----~~l~~~~p~~~f~vSa 281 (355)
.+...+.++++++|+|+.++.......+.+++.. .+.|+++|+||+|+++........ ..+... ...++.+|+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~Sa 176 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEVILFSS 176 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCceEEEEc
Confidence 3345566789999999988766554455666654 478999999999998764433322 222221 345678899
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|++++++.|.+++.
T Consensus 177 ~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 177 LKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999988764
No 86
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.32 E-value=2e-06 Score=75.83 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=55.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHh----hhCCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLS----KEYPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~----~~~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|++||+||+||......++..+.+. ...+...+.
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEE
Confidence 357889999999999987432 222333222 124689999999999864221222222221 112345678
Q ss_pred eeecCCCChHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLR 295 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~ 295 (355)
+||++|.|++++++.|.
T Consensus 150 ~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 150 SCATSGDGLYEGLTWLS 166 (168)
T ss_pred eeCCCCCChHHHHHHHh
Confidence 99999999999998875
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.32 E-value=2.5e-06 Score=75.57 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=57.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+...+.. ...+.|++||+||+||.......+....+.- ..+...+.+|
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 155 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC 155 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 3578999999999998874211 1122222222 1246899999999999643222222222211 1233456789
Q ss_pred ecCCCChHHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~ 298 (355)
|++|.|+.++++.|.+.+
T Consensus 156 a~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 156 ATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999987653
No 88
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.32 E-value=2.7e-06 Score=73.41 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=59.7
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
...+..+|++|+|+|+.++... ..+..++. ....+.|+|+|+||+|+.+... .......+...+....+.+|+.
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSAL 147 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence 3467899999999999876422 22333333 2224689999999999976432 1212223333334456789999
Q ss_pred CCCChHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQF 297 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~ 297 (355)
++.|++++++.|.+.
T Consensus 148 ~~~gi~~l~~~l~~~ 162 (164)
T cd04101 148 RGVGYEEPFESLARA 162 (164)
T ss_pred CCCChHHHHHHHHHH
Confidence 999999999988654
No 89
>PRK04213 GTP-binding protein; Provisional
Probab=98.32 E-value=5.6e-06 Score=74.51 Aligned_cols=88 Identities=19% Similarity=0.100 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEecCCCCCCC-----------cchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC--
Q 018454 209 VIDSSDVVVQVLDARDPQGT-----------RCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-- 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s-----------~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p-- 273 (355)
.++.+|+|++|+|+.+.... .+..+...+.. .++|+++|+||+|+.+.. ....+.+.+....+
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 164 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWR 164 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccc
Confidence 56778999999998653211 11233444433 579999999999997643 23344444332101
Q ss_pred ---ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 274 ---SLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 274 ---~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
..++.+||++| |+++|++.|.+...
T Consensus 165 ~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 165 QWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred ccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 13678999999 99999999987654
No 90
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.31 E-value=2.1e-06 Score=76.74 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=58.2
Q ss_pred hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh-----------hCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-----------EYP 273 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-----------~~p 273 (355)
..+..+|.+|+|+|+.++... ....+.+.+.. ...+.|+++|+||+|+......++..+.+.- ..+
T Consensus 80 ~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 159 (184)
T smart00178 80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP 159 (184)
T ss_pred HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence 356899999999999987421 11123333321 1257899999999998532222223333311 124
Q ss_pred ceEEEeeecCCCChHHHHHHHHH
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
..+|.+|++++.|+++++++|.+
T Consensus 160 ~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 160 LEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred eEEEEeecccCCChHHHHHHHHh
Confidence 56889999999999999999864
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.31 E-value=3.8e-06 Score=70.71 Aligned_cols=89 Identities=21% Similarity=0.196 Sum_probs=60.0
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhhc-CCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCCceEEEe
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHC-KHKHMILLLNKCDLV-PAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~-~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p~~~f~v 279 (355)
.....+.++|++|+|+|+.++.. ...+..++ .... .+.|+++|+||+|+. +......-...+.......++.+
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRES--FENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFET 142 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEE
Confidence 44556788999999999988542 12233333 2211 468999999999997 43322222333333455668889
Q ss_pred eecCCCChHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLR 295 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~ 295 (355)
|+.++.|++++++.|.
T Consensus 143 sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 143 SAKTGENVEELFQSLA 158 (159)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999998874
No 92
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.31 E-value=2.9e-06 Score=73.98 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=55.1
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+...+.. ...+.|++||+||+||.......+....+.. ..+..++.+|
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATC 142 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEee
Confidence 4678999999999998764211 1112222221 1236899999999999643222222222211 1123456789
Q ss_pred ecCCCChHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLR 295 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~ 295 (355)
|++|.|++++++.|.
T Consensus 143 ak~g~gv~~~~~~l~ 157 (159)
T cd04150 143 ATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999998875
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.30 E-value=5.2e-06 Score=71.25 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=62.2
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEE
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFH 278 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~ 278 (355)
......+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+|+.+... ...-...+...+...++.
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e 141 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFE 141 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEE
Confidence 3445567889999999999886543 233333322 1 14689999999999976321 111122233334455788
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+|+.++.|++++++.|.+.+
T Consensus 142 ~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 142 TSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999887654
No 94
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.29 E-value=2.8e-06 Score=74.70 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=57.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+..++.. ...+.|+++|+||+|+..........+.+.. .....+|.+|
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS 156 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence 4578999999999998863211 1122232221 2257899999999999754322333333321 1234578889
Q ss_pred ecCCCChHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLR 295 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~ 295 (355)
|++|.|++++++.|.
T Consensus 157 a~~g~gi~~l~~~l~ 171 (173)
T cd04154 157 AVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999998874
No 95
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.28 E-value=5.4e-06 Score=74.41 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=63.4
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhhc-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEHC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
....+..+|++|+|+|+.++.... ...+...+.... .+.|+++|+||+||.... ........+...+....+.+|++
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~ 146 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAK 146 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 344678899999999998764221 112223333322 367999999999997432 22233344444455567889999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 018454 283 KSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~ 300 (355)
++.|+++|++.|.+.+..
T Consensus 147 ~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 147 TGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877653
No 96
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.28 E-value=9.4e-06 Score=70.05 Aligned_cols=88 Identities=23% Similarity=0.138 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhh----h--CCceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSK----E--YPSLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~----~--~p~~~f~vS 280 (355)
.+..+|++|+|+|+.++...........+.. .++|+++|+||+|+..... .......+.. . .+..++.+|
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS 147 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence 4578999999999987653333333344443 5789999999999975321 1111111111 0 124578899
Q ss_pred ecCCCChHHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~ 298 (355)
+.++.|+++|++.|.++.
T Consensus 148 a~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 148 AKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cccCCCHHHHHHHHHHhh
Confidence 999999999999998765
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.27 E-value=6e-06 Score=71.59 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEee
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vS 280 (355)
......+..+|++|+|+|+.++.... ...+...+... ..+.|+++|+||+|+.+.. ........+........+.+|
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S 150 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS 150 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence 33355788999999999998764321 12222223321 1357889999999997532 223344555555556678899
Q ss_pred ecCCCChHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQF 297 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~ 297 (355)
++++.|+.++++.|.+.
T Consensus 151 a~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 151 AKESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988754
No 98
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.26 E-value=1.6e-06 Score=86.09 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=36.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
....|++||+||||||||||+|.+.. ..+++.||+|.+....-+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~ 232 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLD 232 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEE
Confidence 44889999999999999999999987 6678889988665544443
No 99
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.26 E-value=7.7e-06 Score=84.06 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCC-CCCc-chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH----HHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDP-QGTR-CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG----WLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp-~~s~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~----w~~~l~ 269 (355)
+|| .++.+.+...+..+|++|+|+||.++ .... .+++ ..+. ...-+++|+|+||+|+++.....+ ..+.+.
T Consensus 125 PGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~-~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~ 201 (460)
T PTZ00327 125 PGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVE-IMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVK 201 (460)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHH-HcCCCcEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 565 45677888888999999999999974 2221 1222 1221 112356899999999986443222 222222
Q ss_pred hh--CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 270 KE--YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 270 ~~--~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.. ....+|.+|+.+|.|++.|++.|.+.++.
T Consensus 202 ~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 202 GTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred hhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 21 12457889999999999999999876653
No 100
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.26 E-value=4.1e-06 Score=76.87 Aligned_cols=91 Identities=14% Similarity=0.034 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc----CCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC----KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~----~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|+||+|+|+.++..... ..+...+.... .+.|+|+|+||+||... .........+...+....+.+||+
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAk 149 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAK 149 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence 4678999999999998753221 12223333211 23468999999999742 222223334444445556789999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
+|.|+++|++.|.+.+.
T Consensus 150 tg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 150 TGDRVNLLFQQLAAELL 166 (215)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876653
No 101
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.26 E-value=6.5e-06 Score=75.13 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-HH----HHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-KG----WLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~~----w~~~l~ 269 (355)
+|+ ..+...+...+..+|++|+|+|+..........+..++.. .++| +|+|+||+|++..... +. ....+.
T Consensus 73 PG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 73 PGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred cCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 344 3567778888999999999999988766555556666654 4566 7899999999853322 21 222232
Q ss_pred hh-C---CceEEEeeecCCCCh
Q 018454 270 KE-Y---PSLAFHASINKSFGK 287 (355)
Q Consensus 270 ~~-~---p~~~f~vSa~~~~Gi 287 (355)
.. + ...++++|+.+|.++
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HhcccccCCeEEEeeCccccCC
Confidence 22 1 145678899998874
No 102
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.26 E-value=7e-06 Score=87.22 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=70.0
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhHH----HHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWATK----GWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~~----~w~~~l~~ 270 (355)
+|| .++.......+..+|++++|+|+.++......+...++.. .+.+ +|+|+||+|+++..... .+.+.+..
T Consensus 59 PGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~ 135 (614)
T PRK10512 59 PGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE 135 (614)
T ss_pred CCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 455 3455666777899999999999998765544444444443 3455 57999999998754322 23333322
Q ss_pred hC--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 271 EY--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.. ...+|.+|+.+|.|+++|++.|.++...
T Consensus 136 ~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 136 YGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 21 2457889999999999999999877653
No 103
>PTZ00099 rab6; Provisional
Probab=98.26 E-value=5.4e-06 Score=74.26 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=59.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-h-HHHHHHHHhhhCCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~-~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
..+..+|++|+|+|+.++..... ..+...+.. ...+.|+|||+||+||.... . .... ..+...+....+.+||++
T Consensus 48 ~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~-~~~~~~~~~~~~e~SAk~ 126 (176)
T PTZ00099 48 SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEG-MQKAQEYNTMFHETSAKA 126 (176)
T ss_pred HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHH-HHHHHHcCCEEEEEECCC
Confidence 35689999999999988643211 122222222 22467889999999996421 1 1111 122223445567899999
Q ss_pred CCChHHHHHHHHHHHhh
Q 018454 284 SFGKGSLLSVLRQFARL 300 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~ 300 (355)
|.|+.++++.|.+.++.
T Consensus 127 g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 127 GHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887764
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.26 E-value=3.2e-06 Score=74.25 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=57.3
Q ss_pred hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh--hh---CCceEEEe
Q 018454 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KE---YPSLAFHA 279 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~--~~---~p~~~f~v 279 (355)
..+..+|.+|+|+|+.++... ....+..++.. ...+.|+++|+||+||............+. .. .+..++.+
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeC
Confidence 456889999999999886421 11222222221 123579999999999964322222222221 11 12245678
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||+++.|+++++++|.+.+.
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999876543
No 105
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.25 E-value=3.9e-06 Score=73.66 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi 287 (355)
.+..+|++|+|+|+.++..... ..+.+.+.....+.|+++|+||+||....... ....+........|.+||+++.|+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKA-KQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCH-HHHHHHHHcCCEEEEEeCCCCCCh
Confidence 4568999999999988753211 12223333333479999999999997433211 122233334556788999999999
Q ss_pred HHHHHHHHHHH
Q 018454 288 GSLLSVLRQFA 298 (355)
Q Consensus 288 ~~Ll~~L~q~~ 298 (355)
+++++.|.+.+
T Consensus 148 ~~~f~~l~~~~ 158 (166)
T cd00877 148 EKPFLWLARKL 158 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999987554
No 106
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.25 E-value=9.1e-06 Score=82.14 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~ 270 (355)
+|| .++.......+..+|++|+|+|+.++. ..........+.. ...+++|+|+||+|+++..... +..+.+..
T Consensus 88 PGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~ 165 (406)
T TIGR03680 88 PGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKG 165 (406)
T ss_pred CCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhh
Confidence 455 345566677788899999999999864 2222222223322 2346789999999998753221 11222221
Q ss_pred hC--CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 271 EY--PSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.. ...++.+|+.++.|+++|++.|.+.++
T Consensus 166 ~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 166 TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 11 345788999999999999999988654
No 107
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.25 E-value=1.7e-06 Score=84.22 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=42.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG 353 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~ 353 (355)
..-+|.++||||||||||+++|.+.+ ..++|+|=||+..+++.+.|=+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~ 214 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGY 214 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCC
Confidence 45678899999999999999999766 8999999999999999988644
No 108
>PRK15494 era GTPase Era; Provisional
Probab=98.25 E-value=9.7e-07 Score=87.18 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=39.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
+.+.|++||.||||||||||+|++.+.+.++|.|++|++.+...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~ 96 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT 96 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE
Confidence 4578999999999999999999999999999999999776655443
No 109
>PRK11058 GTPase HflX; Provisional
Probab=98.25 E-value=6e-06 Score=84.13 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcch-HHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
.+..+.+.+..+|++|+|+|+.+|...... .+.+++... ..++|+|+|+||+|+++.... .........+. .+.+
T Consensus 266 ~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~-~v~I 342 (426)
T PRK11058 266 AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDRDEENKPI-RVWL 342 (426)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHHHhcCCCc-eEEE
Confidence 345566778999999999999988643322 123344331 246899999999999764221 11111111232 4668
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||++|.|+++|++.|.+.+.
T Consensus 343 SAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 343 SAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999987764
No 110
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.24 E-value=3.7e-06 Score=86.10 Aligned_cols=86 Identities=27% Similarity=0.347 Sum_probs=63.0
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
++.++..+..+|++|+|+|+.++....+..+ +.. ..++|+++|+||+||.+..... ......++.+|++
T Consensus 285 i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~---l~~-~~~~piiiV~NK~DL~~~~~~~-------~~~~~~~i~iSAk 353 (449)
T PRK05291 285 IERSREAIEEADLVLLVLDASEPLTEEDDEI---LEE-LKDKPVIVVLNKADLTGEIDLE-------EENGKPVIRISAK 353 (449)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCChhHHHH---HHh-cCCCCcEEEEEhhhccccchhh-------hccCCceEEEEee
Confidence 3456678999999999999998865433222 222 3578999999999997654322 1223346788999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 354 tg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 354 TGEGIDELREAIKELAF 370 (449)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.24 E-value=3.9e-06 Score=74.11 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=56.2
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+.+++.. ...+.|+++|+||+|+..........+.+.. .....++.+|
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 157 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence 3567899999999998864321 1123333322 1135899999999998643222222233321 1223467889
Q ss_pred ecCCCChHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLR 295 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~ 295 (355)
|+++.|++++++.|.
T Consensus 158 A~~g~gi~e~~~~l~ 172 (174)
T cd04153 158 ALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999999875
No 112
>PTZ00258 GTP-binding protein; Provisional
Probab=98.24 E-value=9.8e-07 Score=88.70 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=36.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQL 348 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l 348 (355)
...+.|++||.||||||||+|+|.+.. +.++++||||++--.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEE
Confidence 456889999999999999999997665 69999999996544443
No 113
>PRK13768 GTPase; Provisional
Probab=98.24 E-value=5.4e-06 Score=78.67 Aligned_cols=98 Identities=18% Similarity=0.076 Sum_probs=65.0
Q ss_pred HHHHHHhhhcC--CCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhhHHHHHHHHh-------
Q 018454 202 IWGELYKVIDS--SDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWATKGWLRVLS------- 269 (355)
Q Consensus 202 i~~el~kvi~~--sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~------- 269 (355)
.+..+.+.+.. +++|++|+|++.+....+.....++. ....++|+++|+||+|++.....+....++.
T Consensus 116 ~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~ 195 (253)
T PRK13768 116 SGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLE 195 (253)
T ss_pred HHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHH
Confidence 34445555544 89999999998765444433333332 1125799999999999987654333222222
Q ss_pred ---------------------hhCC-ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 270 ---------------------KEYP-SLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 270 ---------------------~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
...+ ..++.+|+.++.|+++|++.|.+++.
T Consensus 196 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 196 ELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 1122 35678899999999999999998874
No 114
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.24 E-value=8.7e-06 Score=82.52 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~ 270 (355)
+|| .++.......+..+|++|+|+|++++. .........++.. ...+++++|+||+|+++.... ......+..
T Consensus 93 PG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~ 170 (411)
T PRK04000 93 PGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG 170 (411)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc
Confidence 454 346667777888999999999999875 3333333333332 123578999999999874322 122222221
Q ss_pred hC--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 271 EY--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.. ...++.+|++++.|+++|++.|.+.++.
T Consensus 171 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 171 TVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 11 2456788999999999999999886553
No 115
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.24 E-value=4e-06 Score=73.17 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh-H------------HHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA-T------------KGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~------------~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+....++.|+|+|+||+||.+... . ..-...+.....
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence 4678999999999988643221 123333443346899999999999975321 1 111112333333
Q ss_pred -ceEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
...+.+|++++.|+++|++.|.+.+
T Consensus 146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 146 AVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999886543
No 116
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.24 E-value=5.8e-06 Score=73.79 Aligned_cols=90 Identities=20% Similarity=0.127 Sum_probs=56.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh--hh---CCceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KE---YPSLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~--~~---~p~~~f~vS 280 (355)
.+..+|++|+|+|+.++..... ..+..+... ...++|+++|+||+|+............+. .. .+..++.+|
T Consensus 72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPAC 151 (183)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEee
Confidence 4788999999999988632111 111112111 124689999999999864322222222221 11 123467889
Q ss_pred ecCCCChHHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~ 298 (355)
|+++.|+++|++.|.+..
T Consensus 152 A~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 152 AIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 999999999999887655
No 117
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.23 E-value=8.6e-06 Score=71.19 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEe
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~v 279 (355)
.....+..+|.+|+|+|+.++... ..+..++.. ..++.|+++|+||+|+.... ........+........+.+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMET 146 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 344567899999999999976432 344445432 12478999999999997432 22223333434445667889
Q ss_pred eecCCCChHHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~ 298 (355)
|++++.|+++++..+...+
T Consensus 147 Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 147 SAKTASNVEEAFINTAKEI 165 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999998776544
No 118
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-06 Score=85.02 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=41.0
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEE
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQL 348 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l 348 (355)
+.+.+.|++||.||||||||+|.|++.++|.||.-+.||++.-.++
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi 114 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI 114 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE
Confidence 3567899999999999999999999999999999999998765544
No 119
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.23 E-value=1e-06 Score=86.96 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=37.8
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
-.|+|||+||||||||||+|.+.+ ..++++|+||....+..+.|
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~ 202 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRV 202 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEe
Confidence 468999999999999999999865 67999999997777776665
No 120
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.23 E-value=7.7e-06 Score=71.86 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=60.2
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEe
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~v 279 (355)
....+..+|++|+|+|+.++... ..+..++. .. ..+.|+++|+||+||.+... ...-...+...+....+.+
T Consensus 80 ~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 157 (180)
T cd04127 80 TTAFFRDAMGFLLIFDLTNEQSF--LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFET 157 (180)
T ss_pred HHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEE
Confidence 34467899999999999886432 22333332 21 23678999999999975321 1112233333344557889
Q ss_pred eecCCCChHHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~ 298 (355)
||+++.|++++++.|.+..
T Consensus 158 Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 158 SAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999887543
No 121
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.23 E-value=5.4e-06 Score=74.34 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=58.8
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCCh----h--hHHHHHHHHhhhCCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPA----W--ATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~----~--~~~~w~~~l~~~~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.+... ..+...+.........|+|+||+||... . ........+........+.+|
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S 147 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS 147 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence 35789999999999988754322 1222223322223344789999999631 1 112233344444556678899
Q ss_pred ecCCCChHHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~ 298 (355)
|+++.|+++|++.|.+.+
T Consensus 148 Ak~g~~v~~lf~~l~~~l 165 (182)
T cd04128 148 TSHSINVQKIFKIVLAKA 165 (182)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887554
No 122
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.23 E-value=7.8e-06 Score=73.54 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhh------hC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSK------EY 272 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~------~~ 272 (355)
+.......+..+|++|+|+|+.+........+...+.. .++|+++|+||+|+.... ....+.+.+.. ..
T Consensus 78 ~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 78 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 34455567889999999999987543333333333322 478999999999997432 23344444422 12
Q ss_pred CceEEEeeecCCCChHH
Q 018454 273 PSLAFHASINKSFGKGS 289 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~ 289 (355)
+..++.+|+++|.|+.+
T Consensus 156 ~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 156 DFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCEEEeehhccccccc
Confidence 44577889999987643
No 123
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.23 E-value=5.4e-06 Score=84.37 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=63.8
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCC----cchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGT----RCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s----~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p 273 (355)
.+..+.++.++++|++|+|+|+.+.... ....+.+.|... ..++|.|+|+||+||.... +.+ +.+.+...
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l-~~l~~~l~ 301 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENL-EEFKEKLG 301 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHH-HHHHHHhC
Confidence 3455667778999999999999754211 112233333321 2468999999999984322 111 22222233
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
..+|.+||.++.|+++|++.|.+.+..
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 457788999999999999999877653
No 124
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.22 E-value=8.6e-06 Score=69.87 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=56.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc------CCCcEEEEEeccCCCChh-h-HHHHHHHHhhhCCceE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC------KHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLA 276 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~------~~k~vILVlNK~DLvp~~-~-~~~w~~~l~~~~p~~~ 276 (355)
..+..+|++|+|+|+.++... ..+..++. ... .+.|+++|+||+|+.+.. . ...... +........
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~ 144 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKY 144 (168)
T ss_pred HHhccCCEEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeE
Confidence 356889999999999987432 22333322 211 358899999999997421 1 122222 222333557
Q ss_pred EEeeecCCCChHHHHHHHHHH
Q 018454 277 FHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
|.+|++++.|++++++.|.+.
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999987644
No 125
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.22 E-value=5.7e-06 Score=73.86 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh-----hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-----ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~-----~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+.. ........+...+...++.+|++
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 4568999999999988643211 12333333333468999999999997532 11122233333344556889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 150 ~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 150 TGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987655
No 126
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.22 E-value=7.8e-06 Score=74.01 Aligned_cols=90 Identities=13% Similarity=0.167 Sum_probs=61.7
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
...+..+|++|+|+|+.++... ..+..++ .......|+++|+||+||.+... .......+........|.+|++
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 150 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESF--VNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAK 150 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence 3467889999999999887532 2233333 33335689999999999976432 1222233333445668899999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|....
T Consensus 151 ~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 151 ENINVEEMFNCITELV 166 (199)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999886554
No 127
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.22 E-value=9.3e-06 Score=73.98 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=59.4
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh----cCCCcEEEEEeccCCCChhhH-HHHHHHH-hhhCCceEEE
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH----CKHKHMILLLNKCDLVPAWAT-KGWLRVL-SKEYPSLAFH 278 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~~-~~w~~~l-~~~~p~~~f~ 278 (355)
....+..+|++|+|+|+.++.+.. ...+.+.+... ..+.|+|+|+||+||...... ..-...+ .+......|.
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence 344678999999999998864322 12222223221 256899999999999653211 1111122 2233455788
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+||++|.|+++|++.+....
T Consensus 154 ~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 154 CSAKYNWHILLLFKELLISA 173 (198)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999998776543
No 128
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.21 E-value=4.1e-06 Score=74.40 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+....++.|+|||+||+||..... ..+....+.+...
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 56789999999999887543221 23333443335789999999999865321 1122233333343
Q ss_pred -ceEEEeeecCCCChHHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
...|.+||++|.|++++++.+...
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 567889999999999999887653
No 129
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.21 E-value=1e-05 Score=85.43 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=68.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhHH----HHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWATK----GWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~~----~w~~~l~~ 270 (355)
+|| .++.......+..+|++|+|+|+.++......+...++.. .+.+ +|+|+||+|+++..... ...+.+..
T Consensus 58 PGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~ 134 (581)
T TIGR00475 58 PGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNS 134 (581)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 454 3455666777899999999999998643333222333432 4667 99999999998755322 12222222
Q ss_pred h-C--CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 271 E-Y--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~-~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
. + ...+|.+|+.+|.|+++|.+.|.++...
T Consensus 135 ~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 135 YIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 1 1 3457889999999999999988877654
No 130
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.21 E-value=8.5e-06 Score=70.00 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=59.7
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~ 282 (355)
...+..+|++++|+|+.++... ..+..++ .....+.|+++|+||+|+...... ..-...+........|.+|++
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 146 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK 146 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 3467899999999999887532 2333333 223458999999999999753221 111222333344457889999
Q ss_pred CCCChHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQ 296 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q 296 (355)
++.|+++|++.|.+
T Consensus 147 ~~~~v~~l~~~l~~ 160 (162)
T cd04106 147 DDFNVTELFEYLAE 160 (162)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999988864
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.21 E-value=6.5e-06 Score=70.70 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=57.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vS 280 (355)
..+..+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+..........+.+... ....++.+|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCS 141 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEee
Confidence 4667899999999999874211 1122222221 12478999999999998644222222333221 234577889
Q ss_pred ecCCCChHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLR 295 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~ 295 (355)
++++.|++++++.|.
T Consensus 142 a~~~~gv~~~~~~l~ 156 (158)
T cd00878 142 AVTGDGLDEGLDWLL 156 (158)
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999998875
No 132
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.20 E-value=7e-06 Score=72.90 Aligned_cols=77 Identities=21% Similarity=0.174 Sum_probs=54.4
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhhhC-CceEEEeeecCC
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKEY-PSLAFHASINKS 284 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~~-p~~~f~vSa~~~ 284 (355)
.+.+|.+|+|+|++.+.......+.+++.. .++|+++|+||+|+.+... ...+.+.+.... ...+|.+||+++
T Consensus 98 ~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g 175 (179)
T TIGR03598 98 RENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKK 175 (179)
T ss_pred ChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCC
Confidence 345789999999998776655555556654 4789999999999986543 233444444332 236788999999
Q ss_pred CChH
Q 018454 285 FGKG 288 (355)
Q Consensus 285 ~Gi~ 288 (355)
.|++
T Consensus 176 ~gi~ 179 (179)
T TIGR03598 176 TGID 179 (179)
T ss_pred CCCC
Confidence 9873
No 133
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.20 E-value=1.2e-05 Score=69.86 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=60.1
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCC-ceEEEeee
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYP-SLAFHASI 281 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p-~~~f~vSa 281 (355)
....+..+|++|+|+|+.++.... ...+...+.. ...+.|+++|+||+|+.... ........+.+.+. ...+.+|+
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence 344678899999999998875321 1223333332 22468899999999997432 11222233333333 34688999
Q ss_pred cCCCChHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQF 297 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~ 297 (355)
++|.|++++++.|.+.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999988653
No 134
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.20 E-value=7e-06 Score=70.01 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=56.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHH---HHHh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~---~L~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|.+++|+|..++... ..+.. .+.. ...+.|+++|+||+|+........-...+........+.+|+++
T Consensus 69 ~~~~~~~~i~v~~~~~~~s~--~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSF--EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT 146 (162)
T ss_pred HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence 56789999999998875421 12222 2222 12478999999999997643221112222233345578899999
Q ss_pred CCChHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQF 297 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~ 297 (355)
+.|++++++.|.+.
T Consensus 147 ~~gi~~l~~~l~~~ 160 (162)
T cd04138 147 RQGVEEAFYTLVRE 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988653
No 135
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.19 E-value=2e-05 Score=66.99 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=63.7
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHh-----hhCCceEEE
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFH 278 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~~~p~~~f~ 278 (355)
.......+..+.+++|+|+..+.......+.+++.. .+.|+++|+||+|+............+. ......++.
T Consensus 73 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 73 EEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 333444567789999999987765555556666664 4689999999999986544333322222 122245678
Q ss_pred eeecCCCChHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~ 297 (355)
+|++++.|+.++++.|.++
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 8999999999999998765
No 136
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.19 E-value=6.6e-06 Score=73.17 Aligned_cols=90 Identities=26% Similarity=0.300 Sum_probs=58.2
Q ss_pred hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhh--------------
Q 018454 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-------------- 270 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-------------- 270 (355)
..+..+|.+|+|+|+.++... ....+...+.. ...+.|+++|+||+|+............+..
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 456889999999999876321 11222222221 1246899999999999643222233333321
Q ss_pred -hCCceEEEeeecCCCChHHHHHHHHHH
Q 018454 271 -EYPSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 271 -~~p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
..+..+|.+||+++.|++++++.|.++
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 123457889999999999999998764
No 137
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.19 E-value=6.1e-06 Score=70.93 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=58.7
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
..+..+|.+++|+|+.++... ..+..++ .. ...+.|+++|+||+||..... .......+.+......+.+||
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSF--EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSA 146 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeC
Confidence 456789999999999886432 2222222 21 124689999999999965321 122233333334456789999
Q ss_pred cCCCChHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQF 297 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~ 297 (355)
+++.|++++++.|...
T Consensus 147 ~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 147 KDRLNVDKAFHDLVRV 162 (164)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999988654
No 138
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.18 E-value=1.2e-05 Score=72.89 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
..+..+|.+|+|+|+.++..... ..+...+....++.|+|||.||+||.... ....-.+.+.+......|.+||++|.
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNF 153 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 34579999999999998764322 12233333334678999999999996421 11112223333344567889999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|++++++.|.+.+.
T Consensus 154 ~V~~~F~~l~~~i~ 167 (189)
T cd04121 154 NITESFTELARIVL 167 (189)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876543
No 139
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.18 E-value=6.7e-06 Score=70.62 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|.+|+|+|+.++..... ..+...+.. ...+.|+|+|+||+||.+... .......+.+.+....+.+||+++
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK 148 (163)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 4678999999999987653211 122223332 124689999999999975321 122223333344455788999999
Q ss_pred CChHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQF 297 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~ 297 (355)
.|+.++++.|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (163)
T cd04136 149 INVDEVFADLVRQ 161 (163)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988643
No 140
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.18 E-value=1.2e-05 Score=69.96 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=60.1
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+||.+.... ..-...+........|.+||
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASA 145 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEEC
Confidence 3457899999999999876422 233333332 2 136789999999999754321 11122233334455788999
Q ss_pred cCCCChHHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~ 298 (355)
+++.|+++|++.|.+.+
T Consensus 146 ~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 146 KENINVKQVFERLVDII 162 (165)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887654
No 141
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.17 E-value=6.5e-06 Score=71.65 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=58.2
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh----cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~----~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|.+|+|+|+.++.+.. ...+...+... ..+.|+++|+||+|+.+.. ....-...+...+....+.+||+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 456889999999998875431 12233333331 1468999999999997522 11111122223334456789999
Q ss_pred CCCChHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQF 297 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~ 297 (355)
+|.|++++++.|.++
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999988765
No 142
>PRK11058 GTPase HflX; Provisional
Probab=98.17 E-value=2.2e-06 Score=87.27 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=36.7
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeec
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYF 352 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~ 352 (355)
..|++||+||||||||+|+|.+.++. +++.||+|++....-+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~ 242 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVA 242 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeC
Confidence 47999999999999999999988765 8899999876655444443
No 143
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.17 E-value=6.8e-06 Score=72.39 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=57.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhh--cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCc-eEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH--CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPS-LAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~-~~f~vSa~~~ 284 (355)
.+..+|++|+|+|+.++... ..+..++... ..+.|+++|+||+||.+.... ..-.+.+.+.+.. ..+.+||+++
T Consensus 74 ~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSF--SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 46899999999999887321 2333333321 136899999999999754311 0011222232222 2477899999
Q ss_pred CChHHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQFA 298 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~ 298 (355)
.|+++|++.|.+.+
T Consensus 152 ~~v~~lf~~l~~~~ 165 (169)
T cd01892 152 DSSNELFTKLATAA 165 (169)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999999887654
No 144
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.16 E-value=1.1e-05 Score=71.58 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChh-----hHHHHHHHHhhhCCc-eEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAW-----ATKGWLRVLSKEYPS-LAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~-----~~~~w~~~l~~~~p~-~~f~vS 280 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+|+|+||+||.+.. ....-...+...+.. ..|.+|
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 148 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS 148 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc
Confidence 56889999999999886533211 1122222223578999999999997532 111112222233333 568899
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
++++.|+.++++.|.+.+.
T Consensus 149 a~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 149 AKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876654
No 145
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.16 E-value=1.5e-05 Score=69.28 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=59.7
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|.+|+|+|+.++... ..+..++.. ..++.|+++|+||+||..... .......+........+.+||
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 4467899999999999987532 234444432 124678999999999965321 222223333334556788999
Q ss_pred cCCCChHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQ 296 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q 296 (355)
++|.|+++++..|..
T Consensus 147 ~~~~~i~e~f~~l~~ 161 (166)
T cd04122 147 KTGENVEDAFLETAK 161 (166)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998877653
No 146
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.16 E-value=1.2e-05 Score=69.16 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=59.0
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|.+|+|+|+.++... ..+..++ .. ...+.|+++|+||+|+........-...+........+.+|+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTF--TNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHH--HhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence 3456789999999999876532 1233232 22 124688999999999974332222223333344566788999
Q ss_pred cCCCChHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQ 296 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q 296 (355)
++|.|++++++.|.+
T Consensus 145 ~~~~gi~~~~~~~~~ 159 (161)
T cd01863 145 KTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988754
No 147
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.15 E-value=1.2e-05 Score=69.65 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=59.7
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|.+|+|+|+.++.. ...+..++.. . ..+.|+++|+||+|+...... ..-...+........+.+|+
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s--~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 345688999999999988642 2233333332 1 146899999999998653211 11122233334456788999
Q ss_pred cCCCChHHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~ 298 (355)
+++.|++++++.|.+.+
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999886543
No 148
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.15 E-value=1.1e-05 Score=72.27 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEeee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHASI 281 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~vSa 281 (355)
.+..+|++|+|+|+.++..... ..+..++.. ...+.|++||+||+|+..........+.+.-.. +...+.+||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 5688999999999998643211 122222221 124789999999999865433333333332111 123456899
Q ss_pred cCCCChHHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~ 298 (355)
++|.|+.++++.|.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999986554
No 149
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.15 E-value=1.1e-05 Score=72.30 Aligned_cols=92 Identities=20% Similarity=0.160 Sum_probs=58.2
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+.+.+.. ...+.|++||+||+||............+... .+..++.+|
T Consensus 80 ~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 80 HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence 4578999999999998764211 1123333322 12468999999999986432222222333211 122345689
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
|++|.|+.++++.|.+.+.
T Consensus 160 a~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999876553
No 150
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.15 E-value=2.3e-05 Score=71.74 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=67.1
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCce--EEEeeecCC
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSL--AFHASINKS 284 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~--~f~vSa~~~ 284 (355)
.+-..+++|+|+|.++...+.++.+++.. .+.|+++|+||+|-++.....+......+ ..+.. ++..|+.++
T Consensus 105 ~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k 182 (200)
T COG0218 105 ANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKK 182 (200)
T ss_pred hhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccc
Confidence 34578999999999999989999999986 68999999999999987654433333332 22322 566788999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|+++|.+.|.+.+.
T Consensus 183 ~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 183 KGIDELKAKILEWLK 197 (200)
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999887764
No 151
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.14 E-value=1.6e-05 Score=68.73 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=59.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hc-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|.+|+|+|+.++... ..+.+++.. .. .+.|+++|+||+|+.... ........+........+.+||+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 456889999999999876532 334444432 22 258999999999997532 12222223333345567889999
Q ss_pred CCCChHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQF 297 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~ 297 (355)
++.|+++|++.|.+.
T Consensus 149 ~~~~v~~l~~~l~~~ 163 (165)
T cd01868 149 DGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999987643
No 152
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.14 E-value=8.1e-06 Score=74.31 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=59.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCCh--------------------hhHHHHHH
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPA--------------------WATKGWLR 266 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~--------------------~~~~~w~~ 266 (355)
.+..+|++|+|.|..++.+.... .+...+....++.|+|+|.||+||... .+...-..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 57899999999999987643221 233334433357899999999998631 11112223
Q ss_pred HHhhhCCceEEEeeecCCCChHHHHHHHHH
Q 018454 267 VLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 267 ~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
.+.+......|.+||+++.|++++++.+.+
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 333334455678999999999999987754
No 153
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.14 E-value=1e-05 Score=68.15 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=57.6
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA 279 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v 279 (355)
...+..+|++++|+|+.++..... ..+...+.. ...++|+++|+||+|+........+...+... .....+.+
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSI 141 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEE
Confidence 345788999999999987542110 112222211 12468999999999997654333333333211 12346788
Q ss_pred eecCCCChHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q 296 (355)
|++++.|++++++.|.+
T Consensus 142 Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 142 SCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeccCCChHHHHHHHhh
Confidence 99999999999998864
No 154
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.13 E-value=1.3e-05 Score=72.41 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=59.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHH---HHh-----hcCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCC-ceEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKE-----HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYP-SLAF 277 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~---L~~-----~~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p-~~~f 277 (355)
..+..+|++|+|+|+.++.... .+..+ +.. ...+.|+|||+||+||.+. .........+..... ...|
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFE--AVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence 4568999999999998875422 22222 211 1246799999999999732 122222333333333 4578
Q ss_pred EeeecCCCChHHHHHHHHHHHh
Q 018454 278 HASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+||+++.|++++++.|.+.+.
T Consensus 147 e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 147 ETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999998876553
No 155
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.13 E-value=1.9e-05 Score=68.86 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=59.5
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+.++|++|+|+|+.++.. ...+..++.. . ..+.|+++|+||+||.... ....-...+........+.+|+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKS--FENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 356789999999999987643 2233344332 1 2467999999999997432 1111122222333455788999
Q ss_pred cCCCChHHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~ 298 (355)
+++.|++++++.|.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 148 KANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999886543
No 156
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.13 E-value=1.3e-05 Score=69.10 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|.+++|+|+.++..... ..+...+.. ...+.|+++|+||+|+.+... ...-...+...+....|.+||+++
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKER 147 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCC
Confidence 4678999999999988643211 112222222 123689999999999976321 111222233334456788999999
Q ss_pred CChHHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQFA 298 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~ 298 (355)
.|+++|++.|.+.+
T Consensus 148 ~~i~~l~~~l~~~~ 161 (164)
T smart00173 148 VNVDEAFYDLVREI 161 (164)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887654
No 157
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.12 E-value=1.9e-05 Score=67.37 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|.+++|+|+.++... ..+..+ +.. ...+.|+++|+||+|+..... ...-...+........+.+|+++
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (162)
T cd04123 69 YYRDADGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT 146 (162)
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 45789999999999876432 222222 222 113689999999999975321 12222223334455678899999
Q ss_pred CCChHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQF 297 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~ 297 (355)
+.|++++++.|.+.
T Consensus 147 ~~gi~~~~~~l~~~ 160 (162)
T cd04123 147 GKGIEELFLSLAKR 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998654
No 158
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.12 E-value=1.7e-05 Score=68.19 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=58.6
Q ss_pred hhhcCCCEEEEEecCCCCCCC-cchHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGT-RCHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s-~~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|++|+|+|+.++... ....+...+... ..+.|+++|+||+|+.+.. ....-...+........+.+|++++
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG 148 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 356789999999999876422 112232333332 2467899999999987421 1111122223333456788999999
Q ss_pred CChHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQF 297 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~ 297 (355)
.|+.++++.|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (163)
T cd01860 149 ENVNELFTEIAKK 161 (163)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988764
No 159
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.12 E-value=7.3e-06 Score=70.93 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=57.6
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH------------HHHHhhhCCc
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW------------LRVLSKEYPS 274 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w------------~~~l~~~~p~ 274 (355)
.+..+|++++|+|+.++..... ..+...+.....+.|+++|+||+|+.+......| ...+...+..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 4478999999999987643211 1122333333357999999999999765432111 1222222333
Q ss_pred -eEEEeeecCCCChHHHHHHHHH
Q 018454 275 -LAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 275 -~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
..+.+|++++.|+++|++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 6788899999999999988753
No 160
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.11 E-value=9.7e-06 Score=71.92 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=57.6
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-HH------------HHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-TK------------GWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~------------~w~~~l~~~~p 273 (355)
.+..+|.+|+|+|+.++...... .+...+.....+.|+|+|.||+||.+... .+ .-...+.+.+.
T Consensus 69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 56789999999999987543221 23333333335789999999999964211 11 11112222333
Q ss_pred -ceEEEeeecCCCChHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
...+.+||++|.|++++++.|.+
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHH
Confidence 35678999999999999988754
No 161
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.08 E-value=1.1e-05 Score=69.73 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|.+|+|+|+.++.... ...+...+... ..++|+++|+||+|+.+... .......+........+.+||+++
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK 148 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence 467899999999998865321 12222223221 24789999999999965322 112223333334455688999999
Q ss_pred CChHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQ 296 (355)
Q Consensus 285 ~Gi~~Ll~~L~q 296 (355)
.|+.+++..|.+
T Consensus 149 ~~v~~l~~~l~~ 160 (163)
T cd04176 149 TMVNELFAEIVR 160 (163)
T ss_pred CCHHHHHHHHHH
Confidence 999999988764
No 162
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.08 E-value=2.2e-05 Score=66.96 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
++.+..+.-...++|++++|..+.||...+++.+.... .+|+|-|++|+||.....++.-.+.|.+.+...+|.+
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~ 126 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFET 126 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEE
Confidence 45556677778999999999999999888887776543 4679999999999865555555555555566678889
Q ss_pred eecCCCChHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~ 297 (355)
|+.++.|+++|++.|...
T Consensus 127 s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 127 SAVDNQGVEELVDYLASL 144 (148)
T ss_pred eccCcccHHHHHHHHHhh
Confidence 999999999999998754
No 163
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.08 E-value=2.1e-05 Score=72.07 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=59.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhh-CCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKE-YPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~-~p~~~f~vSa~~ 283 (355)
..+..+|.+|+|+|+.++.+... ..+...+... ..+.|+|+|.||+||..... ...-...+... .....|.+||++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 46789999999999998754322 1222333322 24689999999999964322 12222223222 234567899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
|.|++++++.|.+.+
T Consensus 148 g~gV~e~F~~l~~~~ 162 (202)
T cd04120 148 NFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887554
No 164
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.08 E-value=1e-05 Score=70.21 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=58.9
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+|+..... .......+.+.+....|.+|+
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 145 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSA 145 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCC
Confidence 345678999999999988743211 2223333331 24799999999999854321 111222233333455678999
Q ss_pred cCCC-ChHHHHHHHHHHH
Q 018454 282 NKSF-GKGSLLSVLRQFA 298 (355)
Q Consensus 282 ~~~~-Gi~~Ll~~L~q~~ 298 (355)
+++. |++++++.|.+.+
T Consensus 146 ~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 146 AEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCchhHHHHHHHHHHHH
Confidence 9995 9999999887654
No 165
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.08 E-value=1.4e-05 Score=69.24 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=58.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|.+|+|+|..++..... ..+...+.. ...+.|+++|+||+||.+... .......+.+......+.+||+++
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK 148 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence 5678999999999876643211 122222322 235789999999999975321 112223333334455788999999
Q ss_pred CChHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQF 297 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~ 297 (355)
.|+.+++..|.+.
T Consensus 149 ~~v~~~~~~l~~~ 161 (164)
T cd04175 149 INVNEIFYDLVRQ 161 (164)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988654
No 166
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.08 E-value=1.5e-05 Score=71.48 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=61.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChh-----------hHHHHHHHHhhhCCc-
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAW-----------ATKGWLRVLSKEYPS- 274 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~-----------~~~~w~~~l~~~~p~- 274 (355)
.+..+|.+|+|.|..++.+.... .+...+.....+.|+|||.||+||.+.. +..+-...+.+.+..
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence 56799999999999987654321 2233333333578999999999996531 112222333344444
Q ss_pred eEEEeeecCCCChHHHHHHHHHHH
Q 018454 275 LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+.+||+++.|++++++.|.+.+
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 467899999999999999887653
No 167
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.07 E-value=2.4e-05 Score=66.95 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=57.9
Q ss_pred hhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCCh-hh-HHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPA-WA-TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~-~~-~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|.+++|+|+.++... ....+..++.. ...++|+++|+||+|+... .. ...... +...+...++.+|++
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LARQWGVPYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HHHHhCCeEEEeeCC
Confidence 467888999999999876421 11222222221 1247999999999999762 11 121112 222233456889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887554
No 168
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.07 E-value=2.4e-05 Score=83.01 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC---CceEEE
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY---PSLAFH 278 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~---p~~~f~ 278 (355)
+..+....+..+|.+|+|+|+.++...........+.. .+.|+|+|+||+|+..... ....+.+.... +..++.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCcceEEE
Confidence 44555667889999999999998754332222222222 4789999999999864321 11222222221 234688
Q ss_pred eeecCCCChHHHHHHHHHHHhh
Q 018454 279 ASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+||+++.|+.+|++.|.+.++.
T Consensus 164 iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EecCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999887764
No 169
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.07 E-value=1.8e-05 Score=69.01 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH-----------HH--HHHhhh-C
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKG-----------WL--RVLSKE-Y 272 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~-----------w~--~~l~~~-~ 272 (355)
.+..+|++++|.|+.++.+... ..+...+.....+.|+++|+||+||.+...... |. ..+... .
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 4578999999999987643211 112223333235789999999999875432110 11 111122 2
Q ss_pred CceEEEeeecCCCChHHHHHHHHHH
Q 018454 273 PSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
....+.+||+++.|++++++.|.+.
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHHH
Confidence 3457889999999999999988754
No 170
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.06 E-value=2.3e-05 Score=74.09 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=69.7
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh----------hcCCCcEEEEEeccCCCCh-hh-HHHHHHHHhhhCCce
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE----------HCKHKHMILLLNKCDLVPA-WA-TKGWLRVLSKEYPSL 275 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~----------~~~~k~vILVlNK~DLvp~-~~-~~~w~~~l~~~~p~~ 275 (355)
.+..+|++|+|+|+.++.... ...+...+.. ...+.|+|+|+||+||... .+ ..+..+.+.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 357899999999998764321 1122222321 1246899999999999742 11 122222232223455
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhhhcc-----ccceEEEEeecCCCChhH
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARLKSD-----KQAISVGFVGYPNVGKSS 321 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~-----~~~i~V~~vG~pNVGKSS 321 (355)
.+.+||+++.|+++|++.|.+.+....+ ...++| ..|-+.-+||-
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p~e~~~~~~~~~~~-~~~~~~~~~~~ 197 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSLHRKISV-QYGDALHKKSR 197 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccCccccceeee-eeccccccccc
Confidence 7889999999999999999887654322 234554 44666666664
No 171
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.06 E-value=2.5e-05 Score=82.80 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=64.6
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhCCceE
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLA 276 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~p~~~ 276 (355)
++.......+..+|.+|+|+|+.++...... .+...+ . .+.|+|+|+||+|+.... ....+.+.+. ..+..+
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~--~~ipiIiViNKiDl~~~~~~~~~~el~~~lg-~~~~~v 157 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E--NDLEIIPVINKIDLPSADPERVKKEIEEVIG-LDASEA 157 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H--cCCCEEEEEECcCCCccCHHHHHHHHHHHhC-CCcceE
Confidence 3445566788999999999999987543322 222222 2 478999999999986422 1123322221 112246
Q ss_pred EEeeecCCCChHHHHHHHHHHHhh
Q 018454 277 FHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+.+||++|.|+++|++.|.+.++.
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCC
Confidence 789999999999999999887764
No 172
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.05 E-value=4.3e-06 Score=85.02 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=35.2
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
..|+|||+||||||||||+|.+.+ .+++++|+||..-....+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~ 201 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVE 201 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEE
Confidence 478999999999999999999766 6789999999655444443
No 173
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.05 E-value=1.8e-05 Score=71.42 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=57.6
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh--hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE--HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++.... ...+...+.. ...++|+|+|+||+|+.+... .....+.....+...++.+|++
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 146 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAK 146 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCC
Confidence 578999999999998764321 1111122222 124789999999999976311 1111111211222346778999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 147 ~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 147 DNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999876553
No 174
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.05 E-value=2.8e-05 Score=66.97 Aligned_cols=88 Identities=16% Similarity=0.042 Sum_probs=59.6
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|.+|+|+|+.++... ..+..++.. ..++.|+++|+||+|+..... ...-...+........+.+|+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSA 144 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEEC
Confidence 3456789999999999886533 223333332 225789999999999975321 111222233334466888999
Q ss_pred cCCCChHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQ 296 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q 296 (355)
+++.|++++++.|.+
T Consensus 145 ~~~~~i~~~~~~~~~ 159 (161)
T cd04113 145 LTGENVEEAFLKCAR 159 (161)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988754
No 175
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.04 E-value=3.4e-05 Score=68.11 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=58.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcC-CCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEe
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCK-HKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~-~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~v 279 (355)
..+..+|++|+|+|+.++... ..+..++. + ..+ ..|+++|.||+||.+... ...-...+........+.+
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 457899999999999875322 12233332 2 112 245899999999975432 1111122333344556788
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
|++++.|+++|++.|.+.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887764
No 176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.04 E-value=2.4e-05 Score=71.61 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=60.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
..+..+|++|+|+|+.+...... ..+...+.....+.|+|||+||+||........-. .+........|.+||+++.|
T Consensus 63 ~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~ 141 (200)
T smart00176 63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCC
Confidence 36788999999999998753211 12233333333578999999999985432221111 22233455678899999999
Q ss_pred hHHHHHHHHHHH
Q 018454 287 KGSLLSVLRQFA 298 (355)
Q Consensus 287 i~~Ll~~L~q~~ 298 (355)
+.++++.|.+.+
T Consensus 142 v~~~F~~l~~~i 153 (200)
T smart00176 142 FEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHH
Confidence 999999887655
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.04 E-value=4.2e-06 Score=86.58 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=36.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
-..|+|||+||||||||||+|.+.+ .+++++|+||+......+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~ 203 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA 203 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE
Confidence 3578999999999999999999765 57899999996655555543
No 178
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.04 E-value=1.4e-05 Score=70.26 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+... ...-...+.+...
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 5678999999999998764322 123334443335789999999999975321 1111222333333
Q ss_pred -ceEEEeeecCCCChHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLR 295 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~ 295 (355)
...+.+||+++.|+++|++.+.
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 3678899999999999988653
No 179
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.04 E-value=1.8e-05 Score=74.23 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p 273 (355)
.+..+|++|+|.|+.++..... ..+...+....++.|+|||.||+||... .+...-...+.+...
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 5789999999999998764422 2333444443457899999999998531 111122233334444
Q ss_pred c-eEEEeeecCCC-ChHHHHHHHHHHH
Q 018454 274 S-LAFHASINKSF-GKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~-~~f~vSa~~~~-Gi~~Ll~~L~q~~ 298 (355)
. ..|.+||++|. |+++++..+...+
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 4 46789999997 8999998775543
No 180
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.04 E-value=2.7e-05 Score=66.28 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc--CCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~--~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
...+..+|++++|+|..++..... ..+...+.... ...|+++|+||+|+.+. .........+........+.+|++
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 144 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence 346778999999999987642211 12222222211 36899999999999863 222233333433333556889999
Q ss_pred CCCChHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQ 296 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q 296 (355)
++.|+.++++.|.+
T Consensus 145 ~~~~i~~l~~~l~~ 158 (160)
T cd00876 145 DNINIDEVFKLLVR 158 (160)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998864
No 181
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.03 E-value=2e-05 Score=64.59 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=59.2
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHH--HHH-HhhcCCCcEEEEEeccCCCChhhHHHH--HHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLE--RHL-KEHCKHKHMILLLNKCDLVPAWATKGW--LRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~--~~L-~~~~~~k~vILVlNK~DLvp~~~~~~w--~~~l~~~~p~~~f~vSa 281 (355)
...+..+|++++|+|+.++......... ..+ .....++|+++|+||+|+.+....... ............+.+|+
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 142 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSA 142 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 4567899999999999987543222111 111 123367999999999999875443332 12222233456788899
Q ss_pred cCCCChHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLR 295 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~ 295 (355)
.++.|+.++++.|.
T Consensus 143 ~~~~~i~~~~~~l~ 156 (157)
T cd00882 143 KTGENVEELFEELA 156 (157)
T ss_pred CCCCChHHHHHHHh
Confidence 99999999998874
No 182
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.03 E-value=1.5e-05 Score=73.74 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=59.6
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi 287 (355)
....+|.+|+|+|..++.+... ..+...+.....+.|++||+||+||........-. .+........|.+||+++.|+
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCH
Confidence 4678999999999998753211 12223333334678999999999996433211111 233334556788999999999
Q ss_pred HHHHHHHHHHH
Q 018454 288 GSLLSVLRQFA 298 (355)
Q Consensus 288 ~~Ll~~L~q~~ 298 (355)
+++++.|.+.+
T Consensus 161 ~~~f~~l~~~~ 171 (219)
T PLN03071 161 EKPFLYLARKL 171 (219)
T ss_pred HHHHHHHHHHH
Confidence 99998887554
No 183
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.03 E-value=1.7e-05 Score=69.41 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCC---hhhHHHHHHHHhhhC-CceEEEeee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVP---AWATKGWLRVLSKEY-PSLAFHASI 281 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp---~~~~~~w~~~l~~~~-p~~~f~vSa 281 (355)
....+|++++|.|..++..... ..+...+... ..+.|+++|.||+||.. ..........+.+.. ....|.+||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 3467899999999998764332 2233333322 14579999999999842 223333334444333 466788999
Q ss_pred cCCCChHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQ 296 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q 296 (355)
+++.|++++++.+.+
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999988753
No 184
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.03 E-value=1.9e-05 Score=70.75 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=58.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHH-------------HHHHHhhhC-
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKG-------------WLRVLSKEY- 272 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~-------------w~~~l~~~~- 272 (355)
....+|++|+|.|..++.+.... .+...+.....+.|+|+|+||+||........ -...+....
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 45789999999999887643221 23333443345789999999999965321110 011111122
Q ss_pred CceEEEeeecCCCChHHHHHHHHHHH
Q 018454 273 PSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
....|.+||+++.|++++++.|.+.+
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 24567899999999999999887665
No 185
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.02 E-value=2.7e-05 Score=68.84 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|.+|+|+|+.++.+... ..+...+.. ...+.|+++|+||+||.... ....-...+.+......+.+||+++
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~ 149 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALR 149 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCC
Confidence 4668999999999998765332 122233333 22578999999999985422 1111122233334556778999999
Q ss_pred CChHHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQFA 298 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~ 298 (355)
.|++++++.|.+.+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (172)
T cd04141 150 HYIDDAFHGLVREI 163 (172)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999886543
No 186
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.02 E-value=1.3e-05 Score=71.48 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEecCCCCCC--CcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh-----hhCCceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQG--TRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~--s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~~~p~~~f~vS 280 (355)
.+..+|.||+|+|+.|+.. ..-..+...+.. ...+.|+++++||+|+............+. ...+..++.+|
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence 5678899999999998642 111223333332 235799999999999865433333333332 12456678899
Q ss_pred ecCCCChHHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQF 297 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~ 297 (355)
+.+|.|+.+.+++|.+.
T Consensus 158 a~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTTBTHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhc
Confidence 99999999999998764
No 187
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.02 E-value=2e-05 Score=71.02 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p 273 (355)
.+..+|++|+|.|+.++.+.... .+...+.....+.|++||.||+||..... .......+.....
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46789999999999987643221 12222333335789999999999954311 1111222333333
Q ss_pred -ceEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
...|.+||++|.|++++++.|.+.+
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999887654
No 188
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.02 E-value=2.9e-05 Score=69.59 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=59.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh----cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH----CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+||..... ...-...+...+....|.+||
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 145 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASA 145 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecC
Confidence 35778999999999987653211 1222223221 24689999999999964221 111122233334455788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|++++++.|.+.+.
T Consensus 146 k~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 146 KTNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876654
No 189
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.01 E-value=3.6e-05 Score=71.10 Aligned_cols=87 Identities=20% Similarity=0.061 Sum_probs=53.7
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCcEEEEEeccCCCC----hhhHHHHHHH--
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKHMILLLNKCDLVP----AWATKGWLRV-- 267 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~vILVlNK~DLvp----~~~~~~w~~~-- 267 (355)
.++..+...+..+|++|+|+|+.++.. ........++. ....+|+|+|+||+|+.+ ........+.
T Consensus 89 ~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~ 167 (219)
T cd01883 89 DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELS 167 (219)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCCCeEEEEEEccccccccccHHHHHHHHHHHH
Confidence 455667778889999999999998521 11112222222 223368899999999983 2222222322
Q ss_pred --Hhhh-C---CceEEEeeecCCCChH
Q 018454 268 --LSKE-Y---PSLAFHASINKSFGKG 288 (355)
Q Consensus 268 --l~~~-~---p~~~f~vSa~~~~Gi~ 288 (355)
+... + ...++.+||.+|.|+.
T Consensus 168 ~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 168 PFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2222 1 2457889999999975
No 190
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.01 E-value=2.3e-05 Score=70.07 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=59.6
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p 273 (355)
....+|++|+|.|..++.+... ..+...+....++.|+|||.||+||.+. .+..+-...+.+...
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~ 148 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG 148 (178)
T ss_pred hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 5688999999999988764322 1233334444467899999999999541 111222333444445
Q ss_pred c-eEEEeeecCCCC-hHHHHHHHHHH
Q 018454 274 S-LAFHASINKSFG-KGSLLSVLRQF 297 (355)
Q Consensus 274 ~-~~f~vSa~~~~G-i~~Ll~~L~q~ 297 (355)
. ..|.+||+++.+ +++++..+...
T Consensus 149 ~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 149 AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 3 467899999995 99999877653
No 191
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.00 E-value=2.1e-05 Score=68.56 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|..++...... .+...+.....+.|+++|+||+||.+.... ......+.+...
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46788999999999887543221 233334333468999999999998653211 111122222233
Q ss_pred -ceEEEeeecCCCChHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
...|.+||+++.|++++++.+.+
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHH
Confidence 34678999999999999987754
No 192
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.00 E-value=2.3e-05 Score=72.55 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=60.9
Q ss_pred CCCEEEEEecCCCCCCCc-chHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454 212 SSDVVVQVLDARDPQGTR-CHHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFGK 287 (355)
Q Consensus 212 ~sDvVL~VvDardp~~s~-~~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~Gi 287 (355)
.+|++|+|+|+.++.... ...+...+... ..+.|+|+|+||+||.+... .......+...+....+.+||+++.|+
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 899999999999875322 12233333332 24689999999999976432 112222333344555678899999999
Q ss_pred HHHHHHHHHHHhhh
Q 018454 288 GSLLSVLRQFARLK 301 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~ 301 (355)
++|++.|.+.+.+.
T Consensus 152 ~~l~~~l~~~~~~~ 165 (221)
T cd04148 152 DELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988777543
No 193
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.00 E-value=4.6e-05 Score=67.93 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=59.9
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|++|+|+|+.++.. ...+..++.. . ..+.|+|+|+||+|+..... .......+........+.+|+
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s--~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 144 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQES--FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSA 144 (188)
T ss_pred HHHccCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeC
Confidence 446789999999999988643 2233334332 1 13578999999999974321 111222233333445788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 145 KQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998776654
No 194
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.99 E-value=1.6e-05 Score=75.46 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=34.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
...++|.|+|.+|||||||||+|++.....+++.+++|
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T 66 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSET 66 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce
Confidence 46789999999999999999999999999999887766
No 195
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.99 E-value=2.7e-05 Score=72.47 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=57.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCCh------------------------hh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPA------------------------WA 260 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~------------------------~~ 260 (355)
.+..+|++|+|+|+.++.... .+..++ .. ...+.|+|||.||+||... +.
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~--~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLE--ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 467899999999999875332 222222 21 2246789999999999751 11
Q ss_pred HHHHHHHHhhh----------CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 261 TKGWLRVLSKE----------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 261 ~~~w~~~l~~~----------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
...|.+.+... .....|.+||++|.|+++++..|.+...
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22333322110 0134678999999999999988765543
No 196
>PTZ00369 Ras-like protein; Provisional
Probab=97.98 E-value=2.8e-05 Score=69.60 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=58.1
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|++|+|+|+.++.... ...+...+.. ...+.|+++|+||+|+..... .......+.+.+....|.+||+++
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~ 152 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQR 152 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCC
Confidence 567899999999998875311 1122222222 124679999999999864321 111222222333445788999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|++++++.|.+.+.
T Consensus 153 ~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 153 VNVDEAFYELVREIR 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998865543
No 197
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.97 E-value=3.2e-05 Score=70.99 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=61.7
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-c-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-C-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa 281 (355)
..+..+|++|+|+|+.++... ..+..++.. . . ...++++|.||+||.... ....-...+.+..+...+.+|+
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf--~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 148 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESF--EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA 148 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeC
Confidence 467889999999999987432 233333332 1 1 235678999999997532 1222233444445566788999
Q ss_pred cCCCChHHHHHHHHHHHhhh
Q 018454 282 NKSFGKGSLLSVLRQFARLK 301 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~~~ 301 (355)
+++.|++++++.|.+.+...
T Consensus 149 k~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988766544
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.97 E-value=4.1e-05 Score=70.10 Aligned_cols=87 Identities=16% Similarity=0.042 Sum_probs=53.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHH----hhhC--C
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVL----SKEY--P 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l----~~~~--p 273 (355)
+...+...+..+|++|+|+|+.++.......+..++.. ....++|+|+||+|+... .........+ .... +
T Consensus 90 ~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~ 168 (208)
T cd04166 90 YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIED 168 (208)
T ss_pred HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 44456667889999999999998765444444444433 122457889999999752 1111112222 2211 2
Q ss_pred ceEEEeeecCCCChHH
Q 018454 274 SLAFHASINKSFGKGS 289 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~ 289 (355)
..++.+||+++.|+.+
T Consensus 169 ~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 169 ITFIPISALDGDNVVS 184 (208)
T ss_pred ceEEEEeCCCCCCCcc
Confidence 3478899999999864
No 199
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.97 E-value=6.2e-06 Score=81.27 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=36.6
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
-.|+|||+||||||||||+|.+.+ ..++++|+||...++..+.|
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~ 201 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRV 201 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEe
Confidence 568999999999999999999765 56899999997666666554
No 200
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.96 E-value=5e-05 Score=74.57 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=68.0
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcc----hHHHHHHHh---hcCCCcEEEEEeccCC-CChhhHHHHHHHHhhhCCce
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRC----HHLERHLKE---HCKHKHMILLLNKCDL-VPAWATKGWLRVLSKEYPSL 275 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~----~~l~~~L~~---~~~~k~vILVlNK~DL-vp~~~~~~w~~~l~~~~p~~ 275 (355)
-+..+.|+++-+++||+|+.......+ ..|...|.. ...+||.++|+||+|+ .+.+..+...+++.+.....
T Consensus 229 ~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 229 LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE 308 (369)
T ss_pred HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999974332111 122222322 2357999999999994 55666777777777665544
Q ss_pred EEE-eeecCCCChHHHHHHHHHHHhh
Q 018454 276 AFH-ASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 276 ~f~-vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.+. +|+.++.|+++|+..+.+++..
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHH
Confidence 333 8999999999999988877653
No 201
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.95 E-value=2.9e-05 Score=69.83 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=59.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p 273 (355)
.+..+|++|+|.|..++.+... ..+...+....++.|+|||.||+||... .+...-...+.+...
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 5788999999999988754322 1233334444457899999999998531 111122233444444
Q ss_pred c-eEEEeeecCCCC-hHHHHHHHHHH
Q 018454 274 S-LAFHASINKSFG-KGSLLSVLRQF 297 (355)
Q Consensus 274 ~-~~f~vSa~~~~G-i~~Ll~~L~q~ 297 (355)
. ..+.+||+++.| +.+++..+.+.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 3 567899999998 99999877653
No 202
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.95 E-value=5.5e-05 Score=66.38 Aligned_cols=87 Identities=18% Similarity=0.102 Sum_probs=56.8
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h--hcCCCcEEEEEeccCCCChhhHHHHHHHHh-----h--hCCc
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E--HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----K--EYPS 274 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~--~~p~ 274 (355)
...+..+|++|+|+|+.++... ..+..++. . ...++|+++|+||+|+..........+.+. + ..+.
T Consensus 61 ~~~~~~a~~ii~V~D~s~~~s~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~ 138 (167)
T cd04161 61 VNYYAEAHGLVFVVDSSDDDRV--QEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLC 138 (167)
T ss_pred HHHHcCCCEEEEEEECCchhHH--HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceE
Confidence 3467899999999999987521 12222222 1 124789999999999865432333333321 1 1244
Q ss_pred eEEEeeecCC------CChHHHHHHHH
Q 018454 275 LAFHASINKS------FGKGSLLSVLR 295 (355)
Q Consensus 275 ~~f~vSa~~~------~Gi~~Ll~~L~ 295 (355)
.++.+||++| .|+.+.+++|.
T Consensus 139 ~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 139 HIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEEEeEceeCCCCccccCHHHHHHHHh
Confidence 5667899998 78999998885
No 203
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.94 E-value=2e-05 Score=76.97 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
..|++.|..+-. .+....+|.++|.+||||||++|+|++..++.+++.+++|
T Consensus 22 ~~l~~~l~~l~~--~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t 73 (313)
T TIGR00991 22 TKLLELLGKLKE--EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEG 73 (313)
T ss_pred HHHHHHHHhccc--ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc
Confidence 345555554433 2346789999999999999999999999998899888776
No 204
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.94 E-value=4.5e-05 Score=66.45 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=56.3
Q ss_pred HhhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEe
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA 279 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~v 279 (355)
...+..+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+..........+.+.-.. ...++.+
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEe
Confidence 34578999999999998753211 1111122211 124689999999999976433333333332111 1235678
Q ss_pred eecCCCChHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLR 295 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~ 295 (355)
|++++.|++++++.|.
T Consensus 156 Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 156 SAKTGEGLQEGMNWVC 171 (173)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 9999999999999875
No 205
>PRK12736 elongation factor Tu; Reviewed
Probab=97.93 E-value=7.9e-05 Score=75.08 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-H----HHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-K----GWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~----~w~~~l~ 269 (355)
+|| .++.......+..+|++|+|+|+.+...........++.. .++| +|+|+||+|+++.... + +....+.
T Consensus 83 PGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 83 PGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 454 3556677777889999999999998765555555555554 4677 6789999999854322 2 2222222
Q ss_pred hh-C---CceEEEeeecCCC--------ChHHHHHHHHHHHh
Q 018454 270 KE-Y---PSLAFHASINKSF--------GKGSLLSVLRQFAR 299 (355)
Q Consensus 270 ~~-~---p~~~f~vSa~~~~--------Gi~~Ll~~L~q~~~ 299 (355)
.. + ...++.+|+.++. ++.+|++.|.++++
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 22 1 1356788999873 57888988887765
No 206
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.92 E-value=2e-05 Score=65.65 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=56.0
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+++...+...|++++|+|+.++.......+..... .+.|+++|+||+|+............+........+.+|+.+
T Consensus 72 ~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 72 RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCC
Confidence 34444556666666666665543222222222221 278999999999998754333344444443334478889999
Q ss_pred CCChHHHHHHHH
Q 018454 284 SFGKGSLLSVLR 295 (355)
Q Consensus 284 ~~Gi~~Ll~~L~ 295 (355)
+.|+.++++.|+
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999998875
No 207
>PLN03118 Rab family protein; Provisional
Probab=97.92 E-value=6.7e-05 Score=68.44 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=60.4
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcch--HHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCH--HLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~--~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|++|+|+|+.++...... .+...+.. ...+.|+++|+||+||.+... .......+........|.+|+
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SA 159 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSA 159 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeC
Confidence 3457789999999999886432211 11122221 113568999999999975422 122223333344556788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|++++++.|.+.+.
T Consensus 160 k~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 160 KTRENVEQCFEELALKIM 177 (211)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876654
No 208
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.91 E-value=4.1e-05 Score=74.50 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=61.8
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCC---C-cchHHHHHHH---hhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQG---T-RCHHLERHLK---EHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP- 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~---s-~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p- 273 (355)
+--+..+.|+.|+++++|||+..+.. . ....|...+. +....+|.++|+||+|+... .+..++.+.+..+
T Consensus 264 lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 264 LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQN 341 (366)
T ss_pred ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCC
Confidence 33466778999999999999987732 1 1111111111 12357899999999998522 2333344433332
Q ss_pred ceEEEeeecCCCChHHHHHHHHHH
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
..+|.+||+++.|+++|++.|++.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 247889999999999999998754
No 209
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.91 E-value=1.5e-05 Score=71.00 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=34.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWY 342 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~ 342 (355)
....+|++||.+|||||||||+|.+.. .+.+++.||+|+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~ 61 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQ 61 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcee
Confidence 355789999999999999999999875 788999999984
No 210
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.90 E-value=9.9e-05 Score=64.16 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=55.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC-ceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p-~~~f~vS 280 (355)
..+..+|++|+|+|..++..... ..+...+... ..+.|+++|+||+|+........-...+.+.+. ...+.+|
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 152 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETS 152 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEE
Confidence 35688999999999887643211 1122212111 135799999999999643322111222222232 4567899
Q ss_pred ecCCCChHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQ 296 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q 296 (355)
|+++.|+.++++.|.+
T Consensus 153 a~~~~~v~~~~~~~~~ 168 (170)
T cd04116 153 AKDATNVAAAFEEAVR 168 (170)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999988754
No 211
>PRK00049 elongation factor Tu; Reviewed
Probab=97.89 E-value=8.4e-05 Score=74.97 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=67.9
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEE-EEEeccCCCChhh-HHHHHHH----Hh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCDLVPAWA-TKGWLRV----LS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vI-LVlNK~DLvp~~~-~~~w~~~----l~ 269 (355)
+|+ .++...+...+..+|++++|+|+.++.......+..++.. .++|.+ +++||+|+++... .+..... +.
T Consensus 83 PG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 455 4677788888999999999999998766555555566654 467876 5899999986432 2222222 22
Q ss_pred hh-C---CceEEEeeecCCC----------ChHHHHHHHHHHHh
Q 018454 270 KE-Y---PSLAFHASINKSF----------GKGSLLSVLRQFAR 299 (355)
Q Consensus 270 ~~-~---p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~ 299 (355)
.. + ...++.+|+.++. |+..|++.|.++.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 21 1 1345678988764 56788888887653
No 212
>CHL00071 tufA elongation factor Tu
Probab=97.89 E-value=8.5e-05 Score=75.20 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-H----HHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-K----GWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~----~w~~~l~ 269 (355)
+|| .+++..+...+..+|++++|+|+.+........+..++.. .++| +|+|+||+|+++.... + +....+.
T Consensus 83 PGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred CCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 444 4677778888999999999999998766555555555554 4677 7789999999874432 2 2222232
Q ss_pred hh-CC---ceEEEeeecCCC------------------ChHHHHHHHHHHH
Q 018454 270 KE-YP---SLAFHASINKSF------------------GKGSLLSVLRQFA 298 (355)
Q Consensus 270 ~~-~p---~~~f~vSa~~~~------------------Gi~~Ll~~L~q~~ 298 (355)
.. ++ ..++++|+.+++ ++..|++.|..+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 21 11 345677888775 3467777777664
No 213
>PLN03110 Rab GTPase; Provisional
Probab=97.89 E-value=8.4e-05 Score=68.41 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=63.1
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEee
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vS 280 (355)
....+..+|.+|+|+|+.++... ..+..++. .. ..+.|+++|+||+||..... .......+...+....+.+|
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S 155 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETS 155 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 34467889999999999886532 23444432 21 24689999999999964322 22334444444556678899
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
|+++.|++++++.|...+.
T Consensus 156 A~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIY 174 (216)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998865543
No 214
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.88 E-value=1.3e-05 Score=71.19 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=34.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWYW 343 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~~ 343 (355)
.+...|+++|.+|||||||||+|.+.. ...+++.||+|.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~ 56 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQL 56 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceE
Confidence 456789999999999999999999875 6778999999843
No 215
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.87 E-value=3e-05 Score=67.94 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=53.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHH-----HhhhCCceEEEe
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRV-----LSKEYPSLAFHA 279 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~-----l~~~~p~~~f~v 279 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+|+............ +........|.+
T Consensus 63 ~~~~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04162 63 RYLSGSQGLIFVVDSADSERL--PLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGT 140 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEe
Confidence 367899999999999887521 122222222 2367999999999998654322222222 222234445666
Q ss_pred eecC------CCChHHHHHHHH
Q 018454 280 SINK------SFGKGSLLSVLR 295 (355)
Q Consensus 280 Sa~~------~~Gi~~Ll~~L~ 295 (355)
||++ ++|+.++++.|.
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHh
Confidence 6666 889998887764
No 216
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.87 E-value=9.8e-05 Score=64.23 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=59.0
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc-CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~-~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.....+|++++|+|..++... ..+..++. ... .+.|+++|.||+||.... ........+.+......+.+||+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 145 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSAC 145 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 356789999999999886432 23334333 222 357999999999996432 22233334444444556889999
Q ss_pred CCCChHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQ 296 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q 296 (355)
++.|+++++..|.+
T Consensus 146 ~~~~v~~~f~~l~~ 159 (161)
T cd04117 146 TNSNIKESFTRLTE 159 (161)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999988864
No 217
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.87 E-value=6e-05 Score=79.84 Aligned_cols=85 Identities=25% Similarity=0.177 Sum_probs=60.1
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS 289 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~ 289 (355)
...+|+|++|+|+.+.. +...+...+.+ .++|+++|+||+|+........-.+.+.+.....++.+||+++.|+++
T Consensus 70 ~~~aDvvI~VvDat~le--r~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 70 NEKPDLVVNVVDASNLE--RNLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIER 145 (591)
T ss_pred hcCCCEEEEEecCCcch--hhHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 45789999999998743 22222223333 579999999999996543322223455555556678899999999999
Q ss_pred HHHHHHHHH
Q 018454 290 LLSVLRQFA 298 (355)
Q Consensus 290 Ll~~L~q~~ 298 (355)
|++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999987653
No 218
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.87 E-value=7.4e-05 Score=75.81 Aligned_cols=88 Identities=15% Similarity=0.033 Sum_probs=54.2
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCC--CCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhH----HHHHHHHhhh-
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARD--PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WAT----KGWLRVLSKE- 271 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDard--p~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~----~~w~~~l~~~- 271 (355)
+++..+...+..+|++|+|+|+.+ ...........++.. ....++++|+||+|++.. ... ++..+.+...
T Consensus 96 ~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g 174 (425)
T PRK12317 96 DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVG 174 (425)
T ss_pred cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhC
Confidence 455555666789999999999998 433333333333332 122468999999999752 111 1222222221
Q ss_pred C---CceEEEeeecCCCChHH
Q 018454 272 Y---PSLAFHASINKSFGKGS 289 (355)
Q Consensus 272 ~---p~~~f~vSa~~~~Gi~~ 289 (355)
+ ...++.+||.+|.|+++
T Consensus 175 ~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 175 YKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred CCcCcceEEEeecccCCCccc
Confidence 1 24578899999999975
No 219
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.86 E-value=2.9e-05 Score=75.28 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=69.4
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-----------------HHHH
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-----------------TKGW 264 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-----------------~~~w 264 (355)
.....+..+..+|+|+.|+|+.++-....+.+.+-+.+ +.+.|-|+|+||+|.++... .-+|
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 34567788999999999999998666666666665553 46899999999999875321 1234
Q ss_pred HHHHhhhC-------------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 265 LRVLSKEY-------------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 265 ~~~l~~~~-------------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+.+...- -..+|.+|+++|.|+++|.++|-..++
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 44332210 123789999999999999998866554
No 220
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.85 E-value=8.7e-05 Score=78.65 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh---hhHHHHHHHHhh--
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSK-- 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~---~~~~~w~~~l~~-- 270 (355)
+|| .++..++...+..+|.+|+|+|+.+........+...+.. .+.|+|+|+||+|+... ....+..+.+..
T Consensus 72 PGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g 148 (594)
T TIGR01394 72 PGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG 148 (594)
T ss_pred CCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc
Confidence 454 3455677788999999999999987654444444444443 57899999999998642 223333343321
Q ss_pred ----hCCceEEEeeecCCC----------ChHHHHHHHHHHHhhh
Q 018454 271 ----EYPSLAFHASINKSF----------GKGSLLSVLRQFARLK 301 (355)
Q Consensus 271 ----~~p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~~~ 301 (355)
.....++.+|+.+++ |+..|++.|.++++..
T Consensus 149 ~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 149 ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 112346778999996 7999999998887643
No 221
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.85 E-value=0.00013 Score=63.85 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=56.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|+|+|+||+||.... ........+...+....+.+||++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 34678999999999988754322 1222222221 2468999999999986432 222333444444445577889998
Q ss_pred ---CCChHHHHHHHHH
Q 018454 284 ---SFGKGSLLSVLRQ 296 (355)
Q Consensus 284 ---~~Gi~~Ll~~L~q 296 (355)
+.++++++..|.+
T Consensus 151 ~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 151 PSENDHVEAIFMTLAH 166 (170)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 7778887776654
No 222
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.83 E-value=9e-05 Score=75.92 Aligned_cols=87 Identities=26% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
......+..+|++|+|+|+.++...... +...+.. .++|+|+|+||+||.... ... +.......++.+|+++
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~~-~~~----~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKINS-LEF----FVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCcc-hhh----hhhhcCCceEEEEEec
Confidence 4456788999999999999987643332 3333322 478999999999997542 111 2222223356789987
Q ss_pred CCChHHHHHHHHHHHh
Q 018454 284 SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~ 299 (355)
.|++++++.|.+...
T Consensus 346 -~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 346 -LKIKALVDLLTQKIN 360 (442)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 588888877766553
No 223
>PLN03108 Rab family protein; Provisional
Probab=97.82 E-value=0.00013 Score=66.89 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=58.1
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa 281 (355)
...+..+|.+|+|+|+.++... ..+..++. . ...+.|+++|+||+||.... ......+.+...+....+.+|+
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~--~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 3456789999999999876532 22333332 1 12468999999999996532 1122223333344556788999
Q ss_pred cCCCChHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQF 297 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~ 297 (355)
+++.|++++++.+...
T Consensus 151 ~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 151 KTAQNVEEAFIKTAAK 166 (210)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999988665433
No 224
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.81 E-value=0.00013 Score=78.93 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHH---hh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVL---SK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l---~~ 270 (355)
+||.. +.......+..+|++|+|+|+.+............+.. .+.|+|+|+||+|+.... ....+...+ ..
T Consensus 303 PGhe~-F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e 379 (742)
T CHL00189 303 PGHEA-FSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPE 379 (742)
T ss_pred CcHHH-HHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchH
Confidence 56532 33333457789999999999988654333333344433 579999999999997532 111222111 11
Q ss_pred hC--CceEEEeeecCCCChHHHHHHHHHHH
Q 018454 271 EY--PSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 271 ~~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.. .+.++.+||.+|.|+++|++.|..+.
T Consensus 380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 11 24567899999999999999887654
No 225
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.5e-05 Score=78.01 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh---hCCceEE
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK---EYPSLAF 277 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~---~~p~~~f 277 (355)
.+-.++.+.+..||-+|+||||...+-. .-+..+-.....+..+|.|+||+||-... .++....+.+ ..+..++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqA--QT~anf~lAfe~~L~iIpVlNKIDlp~ad-pe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQA--QTVANFYLAFEAGLAIIPVLNKIDLPSAD-PERVENQLFELFDIPPAEVI 213 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchH--HHHHHHHHHHHcCCeEEEeeeccCCCCCC-HHHHHHHHHHHhcCCccceE
Confidence 3455677799999999999999865432 33333322222578899999999985432 2333333333 3456789
Q ss_pred EeeecCCCChHHHHHHHHHHHh
Q 018454 278 HASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
++||++|+|+++|++++.+..+
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCC
Confidence 9999999999999999887765
No 226
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.80 E-value=0.00011 Score=80.21 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=63.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChH
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKG 288 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~ 288 (355)
....+|+||+|+|+.+.. +...+...+.+ .++|+++|+||+|+........-.+.+++.....++.+|+.++.|++
T Consensus 82 ~~~~aD~vI~VvDat~le--r~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GId 157 (772)
T PRK09554 82 LSGDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIE 157 (772)
T ss_pred hccCCCEEEEEecCCcch--hhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHH
Confidence 356899999999998743 33344444444 57999999999999754333333455555555667888999999999
Q ss_pred HHHHHHHHHH
Q 018454 289 SLLSVLRQFA 298 (355)
Q Consensus 289 ~Ll~~L~q~~ 298 (355)
+|.+.+.+..
T Consensus 158 eL~~~I~~~~ 167 (772)
T PRK09554 158 ALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 227
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.79 E-value=7.3e-05 Score=66.82 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=58.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH-----------HHHHHHHhhhCC-c
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT-----------KGWLRVLSKEYP-S 274 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-----------~~w~~~l~~~~p-~ 274 (355)
.+..+|++|+|.|..++..... ..+...+....++.|+|+|+||+||.+.... ..-...+.+... .
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 3578899999999877653221 1233344433457999999999998642110 111222333333 3
Q ss_pred eEEEeeecCCCChHHHHHHHHHHH
Q 018454 275 LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..|.+||+++.|++++++.|.+.+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 567899999999999999887554
No 228
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.78 E-value=0.00017 Score=74.49 Aligned_cols=88 Identities=15% Similarity=0.014 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHhh---h----
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSK---E---- 271 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~~---~---- 271 (355)
++...+...+..+|++|+|+|+.+...........++... .-+++|+|+||+|++.. .......+.+.. .
T Consensus 119 ~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~ 197 (474)
T PRK05124 119 QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN 197 (474)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 4555566668999999999999887654333333333321 23578999999999842 222222222221 1
Q ss_pred CCceEEEeeecCCCChHH
Q 018454 272 YPSLAFHASINKSFGKGS 289 (355)
Q Consensus 272 ~p~~~f~vSa~~~~Gi~~ 289 (355)
....++.+|++++.|+..
T Consensus 198 ~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 198 LDIRFVPLSALEGDNVVS 215 (474)
T ss_pred CCceEEEEEeecCCCccc
Confidence 124578899999999864
No 229
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.78 E-value=7e-05 Score=68.63 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=38.3
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+...+...+..+|.+|+|+|+.+........+.+.+.. .++|+++|+||+|++
T Consensus 84 f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 84 FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence 34556677889999999999987664433333333332 468999999999986
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.77 E-value=0.0002 Score=72.51 Aligned_cols=88 Identities=17% Similarity=0.055 Sum_probs=55.8
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHh---hhC---
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLS---KEY--- 272 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~---~~~--- 272 (355)
++...+...+..+|++|+|+|+.++..........++... ..+++|+|+||+|++... ......+.+. ...
T Consensus 92 ~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~ 170 (406)
T TIGR02034 92 QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFR 170 (406)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCC
Confidence 3445556678899999999999987665554444444331 235688999999998522 1111222221 111
Q ss_pred CceEEEeeecCCCChHH
Q 018454 273 PSLAFHASINKSFGKGS 289 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~ 289 (355)
...++.+|+.+|.|+.+
T Consensus 171 ~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 171 DVTFIPLSALKGDNVVS 187 (406)
T ss_pred CccEEEeecccCCCCcc
Confidence 13477899999999874
No 231
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.77 E-value=0.00016 Score=73.38 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHH--HHhhcCCCcEEEEEeccCCCC--hhh----HHHHHHH
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERH--LKEHCKHKHMILLLNKCDLVP--AWA----TKGWLRV 267 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~--L~~~~~~k~vILVlNK~DLvp--~~~----~~~w~~~ 267 (355)
+|| .+++......+..+|++|+|+|+.++........... +.......++|+|+||+|++. ... ..++.+.
T Consensus 93 pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~ 171 (426)
T TIGR00483 93 PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL 171 (426)
T ss_pred CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence 344 3466666667889999999999998742222111111 222223357899999999974 221 1223333
Q ss_pred HhhhC----CceEEEeeecCCCChHH
Q 018454 268 LSKEY----PSLAFHASINKSFGKGS 289 (355)
Q Consensus 268 l~~~~----p~~~f~vSa~~~~Gi~~ 289 (355)
+.... ...++.+||+++.|+.+
T Consensus 172 ~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 172 IKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHcCCCcccceEEEeeccccccccc
Confidence 33221 24578899999999875
No 232
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.77 E-value=0.00024 Score=75.31 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH------------------HHHH-----
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------KGWL----- 265 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~------------------~~w~----- 265 (355)
.+..+|++|+|+|+.+............+.. .+.|+|+|+||+|+.+.+.. ..+.
T Consensus 89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~ 166 (590)
T TIGR00491 89 GGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYN 166 (590)
T ss_pred HHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHH
Confidence 5678999999999998654433444444443 47899999999999864310 0110
Q ss_pred --HHHhhh-------------C-CceEEEeeecCCCChHHHHHHHHHHH
Q 018454 266 --RVLSKE-------------Y-PSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 266 --~~l~~~-------------~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+.+. . .+.++.+||.+|.|+++|+..|..++
T Consensus 167 lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 167 LVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 111111 1 24578899999999999998875433
No 233
>PLN03127 Elongation factor Tu; Provisional
Probab=97.76 E-value=0.00017 Score=74.07 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhhH-HHHHHHHhhh--
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWAT-KGWLRVLSKE-- 271 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~~-~~w~~~l~~~-- 271 (355)
+|| .+++..+...+..+|++++|+|+.+.......++..++.. .+.| +|+|+||+|+++.... +.....+.+.
T Consensus 132 PGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 132 PGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred CCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 344 3466666667788999999999998766555555555554 4677 5789999999864322 2122122211
Q ss_pred ---CC---ceEEEeeec---CCCC-------hHHHHHHHHHHHh
Q 018454 272 ---YP---SLAFHASIN---KSFG-------KGSLLSVLRQFAR 299 (355)
Q Consensus 272 ---~p---~~~f~vSa~---~~~G-------i~~Ll~~L~q~~~ 299 (355)
++ ..++.+|+. ++.| +..|++.|.++++
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 21 234455543 4544 6788888877754
No 234
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.75 E-value=0.00011 Score=79.88 Aligned_cols=88 Identities=23% Similarity=0.180 Sum_probs=58.5
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh------hC--CceEEE
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK------EY--PSLAFH 278 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~------~~--p~~~f~ 278 (355)
...+..+|++|+|+|+.+...........++.. .+.|+|+|+||+|+.... .......+.. .+ .+.+|.
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEE
Confidence 346788999999999998654433333344433 579999999999995421 1111122211 11 145788
Q ss_pred eeecCCCChHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~ 297 (355)
+||++|.|+.+|++.|...
T Consensus 432 vSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EeCCCCCCchHHHHhhhhh
Confidence 9999999999999987643
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=97.72 E-value=0.00025 Score=71.53 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEE-EEEeccCCCChhhHH-----HHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCDLVPAWATK-----GWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vI-LVlNK~DLvp~~~~~-----~w~~~l~ 269 (355)
+|| .++...+...+..+|++++|+|+.+............+.. .++|.+ +|+||+|+++..... +....+.
T Consensus 83 PGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 83 PGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 455 4667778888999999999999988554433333344433 467865 579999998543221 1222222
Q ss_pred hh-CC---ceEEEeeecCCC----------ChHHHHHHHHHHHh
Q 018454 270 KE-YP---SLAFHASINKSF----------GKGSLLSVLRQFAR 299 (355)
Q Consensus 270 ~~-~p---~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~ 299 (355)
.. ++ ..++.+|+.++. ++.+|++.|.++.+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 21 11 345778998874 67888888887654
No 236
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.72 E-value=2e-05 Score=76.67 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=30.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY 342 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~ 342 (355)
--.||+||+||+|||||+|+|.+.+- +|+++|=||.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL 231 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTL 231 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCC-cccccceeee
Confidence 35689999999999999999998764 8888887773
No 237
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.71 E-value=0.00034 Score=65.52 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=37.8
Q ss_pred CcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 244 k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+|+++|+||+|+++......| .... ..+.+||.++.|+++|++.|-+.+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~----~~~~--~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLL----ARQP--NSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCHHHHHHH----hcCC--CEEEEcCCCCCCHHHHHHHHHHHh
Confidence 689999999999876654433 2222 256779999999999999988765
No 238
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.71 E-value=0.00024 Score=79.31 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=60.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH--------------HHHHHH------
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT--------------KGWLRV------ 267 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~--------------~~w~~~------ 267 (355)
.....+|++|+|+|+.+............+.. .++|+|+|+||+|+.+.+.. ..-...
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 35677999999999988655444444455544 47899999999999864321 000111
Q ss_pred -----Hhhh--------------CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 268 -----LSKE--------------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 268 -----l~~~--------------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
|.+. ..+.++++||.+|.|+++|+..|..+.+
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111 1245678999999999999998865443
No 239
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.71 E-value=3.4e-05 Score=75.23 Aligned_cols=47 Identities=30% Similarity=0.382 Sum_probs=38.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC-------ccccCCCCCee--EEEEEEEeeec
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN-------VILFFPASVVW--YWFYCQLLFYF 352 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~-------~~~vs~iPGtT--~~~y~~l~~~~ 352 (355)
..+|+|||+||||||||+|.|.+.+ ..|.-|+||+- +.-+|+|++-=
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~P 118 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLP 118 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCc
Confidence 4789999999999999999999743 45677889986 77778887643
No 240
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.70 E-value=0.00018 Score=76.22 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=57.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHHHHHHHh---hhC--CceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLS---KEY--PSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~w~~~l~---~~~--p~~~f~vS 280 (355)
..+..+|++|+|+|+.+............+.. .+.|+|+++||+|+... .....+...+. ..+ ...++.+|
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 46788999999999987654333333333332 57899999999999532 12222222111 111 23578899
Q ss_pred ecCCCChHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQ 296 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q 296 (355)
|++|.|+.+|++.|..
T Consensus 232 AktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 232 ALTGDGIDELLDMILL 247 (587)
T ss_pred CCCCCChHHHHHhhhh
Confidence 9999999999998753
No 241
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.70 E-value=0.00045 Score=60.60 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCC--cchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----C
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y 272 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s--~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~ 272 (355)
+.+|+.- -..+|+|+|+|||.||..- .-.++...+.+ ...+.|++++.||.|+-..-......+.+.-. .
T Consensus 79 rsmWery---cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdR 155 (186)
T KOG0075|consen 79 RSMWERY---CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDR 155 (186)
T ss_pred HHHHHHH---hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccc
Confidence 5677764 4567999999999997532 11345555543 23578999999999986544334444444221 1
Q ss_pred CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 273 PSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
-+..|.+|++...+++.++++|.+.+.
T Consensus 156 EvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 156 EVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred eEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 356789999999999999999998875
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.67 E-value=0.00028 Score=71.07 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEE-EEEeccCCCChhh-HH----HHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCDLVPAWA-TK----GWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vI-LVlNK~DLvp~~~-~~----~w~~~l~ 269 (355)
+|| .+++......+..+|++++|+|+.++..........++.. .+.|.+ +|+||+|+++... .+ +....+.
T Consensus 83 pGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 83 PGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred Cch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 455 3455666777889999999999998654444444444443 366755 6899999986432 22 1222232
Q ss_pred hhC--C--ceEEEeeecCCC--------ChHHHHHHHHHHH
Q 018454 270 KEY--P--SLAFHASINKSF--------GKGSLLSVLRQFA 298 (355)
Q Consensus 270 ~~~--p--~~~f~vSa~~~~--------Gi~~Ll~~L~q~~ 298 (355)
... + ..++.+|+.++. ++.+|++.|.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 221 1 456788998764 3445666665543
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.66 E-value=0.00029 Score=75.16 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=60.8
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC--hhhHHHHHHHHh---hh--CC-
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP--AWATKGWLRVLS---KE--YP- 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp--~~~~~~w~~~l~---~~--~p- 273 (355)
+.......+..+|++|+|+|+.++..........++... ..+++|+|+||+|++. ..........+. .. +.
T Consensus 117 f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~ 195 (632)
T PRK05506 117 YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHD 195 (632)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCC
Confidence 444555678999999999999887655444444444331 2367889999999985 222222222222 11 21
Q ss_pred ceEEEeeecCCCChH------------HHHHHHHHHH
Q 018454 274 SLAFHASINKSFGKG------------SLLSVLRQFA 298 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~------------~Ll~~L~q~~ 298 (355)
..++++||.+|.|+. .|++.|..+.
T Consensus 196 ~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~ 232 (632)
T PRK05506 196 VTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVE 232 (632)
T ss_pred ccEEEEecccCCCccccccCCCcccHhHHHHHHhcCC
Confidence 346789999999986 4677666543
No 244
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.66 E-value=0.00011 Score=66.39 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=28.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.-..|+++|.+|||||||+|.|.+.. +.+...|++|
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t 75 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFAT 75 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch-hccCCcccee
Confidence 34789999999999999999999875 3444555555
No 245
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.64 E-value=3.1e-05 Score=75.99 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=36.2
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
-.||+||+||+|||||||++..-+ .+++++|=||-.=...++++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~ 203 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRV 203 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEe
Confidence 458999999999999999998654 88999998886666666655
No 246
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.63 E-value=3.4e-05 Score=78.86 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=41.9
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeec
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYF 352 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~ 352 (355)
+...-+..+||||||||||++|.+...+ ..|.|+|-||+..|++.+.|-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhh
Confidence 4556778999999999999998887554 789999999999999988873
No 247
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.62 E-value=0.00048 Score=62.21 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCC-CcEEEEEeccCCCChhhHHHHHHHHhhh-C
Q 018454 195 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPAWATKGWLRVLSKE-Y 272 (355)
Q Consensus 195 ~~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~~~~~~w~~~l~~~-~ 272 (355)
.+||.+ ++--..-....++-+|++||++.|......++..++.. .+ .|+++.+||.||-+.+..+...+.+... .
T Consensus 75 tPGq~R-F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~ 151 (187)
T COG2229 75 TPGQER-FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELL 151 (187)
T ss_pred CCCcHH-HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccC
Confidence 367754 32222234566899999999999987766777777765 34 8999999999998777667777777665 3
Q ss_pred CceEEEeeecCCCChHHHHHHHHH
Q 018454 273 PSLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
...++..++..++|..+.+..|..
T Consensus 152 ~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 152 SVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred CCceeeeecccchhHHHHHHHHHh
Confidence 566777899999998877776543
No 248
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00032 Score=64.56 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=69.3
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc-CCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCce
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSL 275 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~-~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~ 275 (355)
|...-+..++..|+.|++|.|..+..+. .++..|+. +.. .+.+.+||.||+|+... .+..+--+.|..++...
T Consensus 73 rf~ti~~sYyrgA~gi~LvyDitne~Sf--eni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 73 RFRTITTAYYRGAMGILLVYDITNEKSF--ENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK 150 (207)
T ss_pred hHHHHHHHHHhhcCeeEEEEEccchHHH--HHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe
Confidence 3444455678899999999999876543 34444544 332 37899999999999753 34445556677777888
Q ss_pred EEEeeecCCCChHHHHHHHHHHHh
Q 018454 276 AFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+.+||++|.++.+.+-.|.....
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHHH
Confidence 889999999999987776654443
No 249
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0004 Score=71.63 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=65.1
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE---- 271 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~---- 271 (355)
+||.....-+.. =.+-+|++++|||+.|.....-.+-.+.++. .+.|+|+++||+|..+.. .......+.+.
T Consensus 63 PGHeAFt~mRaR-Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~ 138 (509)
T COG0532 63 PGHEAFTAMRAR-GASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVP 138 (509)
T ss_pred CcHHHHHHHHhc-CCccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCH
Confidence 454433333322 2367899999999998776555444555554 689999999999987432 22222222221
Q ss_pred --C--CceEEEeeecCCCChHHHHHHHHHHH
Q 018454 272 --Y--PSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 272 --~--p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+ -+.++.+||++|+|+.+|+..+.-.+
T Consensus 139 E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 139 EEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred hhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 1 25677899999999999999765443
No 250
>PRK10218 GTP-binding protein; Provisional
Probab=97.58 E-value=0.00039 Score=73.93 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh---hhHHHHHHHHhhh------C
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSKE------Y 272 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~---~~~~~w~~~l~~~------~ 272 (355)
+.......+..+|.+|+|+|+.+........+...+.. .++|.|+|+||+|+... .......+.+... .
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 34455668899999999999987654444444444443 57899999999998642 3334444444221 1
Q ss_pred CceEEEeeecCCC----------ChHHHHHHHHHHHhhh
Q 018454 273 PSLAFHASINKSF----------GKGSLLSVLRQFARLK 301 (355)
Q Consensus 273 p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~~~ 301 (355)
...++.+|+.+|+ |+..|++.+..+++..
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 2346788999998 5788998888887643
No 251
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.56 E-value=0.00064 Score=72.04 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=57.2
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH------------------HH------
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------KG------ 263 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~------------------~~------ 263 (355)
..+..+|++|+|+|+.+...........++.. .+.|+++++||+|+.+.+.. ..
T Consensus 90 ~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ 167 (586)
T PRK04004 90 RGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY 167 (586)
T ss_pred HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence 45678999999999998543333333444443 57899999999999753220 00
Q ss_pred -HHHHHhhh--------------CCceEEEeeecCCCChHHHHHHHHH
Q 018454 264 -WLRVLSKE--------------YPSLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 264 -w~~~l~~~--------------~p~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
...++... ..+.++.+|+.++.|+++|++.+..
T Consensus 168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 11122211 1134678899999999999887754
No 252
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.56 E-value=0.00028 Score=65.75 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=57.6
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|..++..... ..+...+....++.|+|||.||+||.... ...+-...+.+...
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~ 148 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG 148 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC
Confidence 4689999999999998853221 11222233334678999999999996421 11112223333444
Q ss_pred c-eEEEeeecCCC-ChHHHHHHHHHHH
Q 018454 274 S-LAFHASINKSF-GKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~-~~f~vSa~~~~-Gi~~Ll~~L~q~~ 298 (355)
. ..|.+||+++. |+.+++......+
T Consensus 149 ~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 149 AVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 3 46788999988 5999998776543
No 253
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.56 E-value=5.6e-05 Score=74.11 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=30.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY 342 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~ 342 (355)
..+.+|+||.|||||||++|+|...... ++..|=+|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TI 55 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTI 55 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCccee
Confidence 4578999999999999999999987644 777776663
No 254
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.56 E-value=0.00011 Score=63.91 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 291 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 291 l~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
+..++++.+. .+..+|+++|.+|||||||+|+|.+.....+.|..|.+
T Consensus 2 ~~~~~~~~~~---~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~ 49 (173)
T cd04155 2 LSLLRKLRKS---SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFN 49 (173)
T ss_pred hhHHHHhhcc---CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcc
Confidence 3455555432 34688999999999999999999987665666777743
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=97.53 E-value=0.001 Score=68.95 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=54.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChhh-HHH----HHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAWA-TKG----WLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~~-~~~----w~~~l~ 269 (355)
+|| .++...+...+..+|++|+|+|+.+............+.. .++| +|+++||+|+++... .+. ....+.
T Consensus 152 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 152 PGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 454 3466677888889999999999998765444444444443 4677 788999999987432 222 222232
Q ss_pred hh-C---CceEEEeeecCCC
Q 018454 270 KE-Y---PSLAFHASINKSF 285 (355)
Q Consensus 270 ~~-~---p~~~f~vSa~~~~ 285 (355)
.. + ...++.+|+.++.
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred hcCCCcCcceEEEEEccccc
Confidence 21 1 1345667877653
No 256
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.53 E-value=0.00038 Score=61.18 Aligned_cols=91 Identities=10% Similarity=0.034 Sum_probs=58.0
Q ss_pred hhcCCCEEEEEecCCCCCCC-cchHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGT-RCHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s-~~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
....+|.+|+|+|+.+.... ....+...+.. ...+.|+|+|+||+|+..... .......+...+...++.+|++++
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN 148 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 55678999999998874321 11111122221 124679999999999974321 122223333444456788999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|+.+++..|.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (180)
T cd04137 149 ENVEEAFELLIEEIE 163 (180)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998876654
No 257
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.51 E-value=0.0004 Score=66.64 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=42.8
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
+..+....+..+|++|+|+|+.+........+.+.+.. .++|+++++||+|+..
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 45567778899999999999988766555556665554 5789999999999975
No 258
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.50 E-value=0.00049 Score=59.96 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=55.5
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC-ceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP-SLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p-~~~f~vSa~~ 283 (355)
.+..+|.+|+|+|+.++.... ...+...+.. ...+.|+++|+||+|+.+... ...-...+.+.+. ...+.+||++
T Consensus 69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARK 148 (168)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCC
Confidence 456789999999988764221 1222222222 124689999999999975321 1111222223333 4567899999
Q ss_pred CCChHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQ 296 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q 296 (355)
+.|++++++.|..
T Consensus 149 ~~~i~~~f~~i~~ 161 (168)
T cd04177 149 RTNVDEVFIDLVR 161 (168)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998764
No 259
>PRK12739 elongation factor G; Reviewed
Probab=97.49 E-value=0.00059 Score=73.64 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
+|+. .+..++...+..+|++|+|+|+.+........+..++.. .++|+|+++||+|+...
T Consensus 81 PG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 81 PGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred CCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 3443 345578889999999999999998876655666666654 57999999999999854
No 260
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00093 Score=61.10 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=70.1
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcC-CCcEEEEEeccCCCChhhH-HHHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCK-HKHMILLLNKCDLVPAWAT-KGWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~-~k~vILVlNK~DLvp~~~~-~~w~~~l~ 269 (355)
.|| .|+.--+-.++.+|+++|.|.|..|-.+. ++..+||.. ... +.-++||.||.||+.+... .+--+...
T Consensus 79 AGQ-ERFrslipsY~Rds~vaviVyDit~~~Sf--e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA 155 (221)
T KOG0094|consen 79 AGQ-ERFRSLIPSYIRDSSVAVIVYDITDRNSF--ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA 155 (221)
T ss_pred ccH-HHHhhhhhhhccCCeEEEEEEeccccchH--HHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence 454 45555566788999999999999887644 234444432 222 3557889999999986432 12222333
Q ss_pred hhCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 270 KEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 270 ~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+++....+..|++.|+++..|+..+...++.
T Consensus 156 kel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 156 KELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 4456666788999999999999998877764
No 261
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.44 E-value=0.00016 Score=76.88 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=33.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCccccCCC-CCeeEE
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPA-SVVWYW 343 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~i-PGtT~~ 343 (355)
.++|.+||.|||||||+||+|++..++.++.. |+||..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~ 156 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV 156 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE
Confidence 46799999999999999999999998888876 788744
No 262
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.42 E-value=0.00038 Score=59.75 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=58.7
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcC-CCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCK-HKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~-~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|.+|+|.|..++.+... ..+...+..... +.|++||.||+|+.... ....-...+...+....+.+|++++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG 146 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence 35788999999999987643221 123333333333 58999999999987622 2122223333444566788999999
Q ss_pred CChHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQ 296 (355)
Q Consensus 285 ~Gi~~Ll~~L~q 296 (355)
.|+.+++..|.+
T Consensus 147 ~~v~~~f~~~i~ 158 (162)
T PF00071_consen 147 ENVKEIFQELIR 158 (162)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999998887654
No 263
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.40 E-value=0.0011 Score=62.42 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
+..+....+..+|.+|+|+|+.+........+.+++.. .++|+++|+||+|+..
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAG 130 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccC
Confidence 34456667888999999999998765444455555544 5799999999999975
No 264
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0019 Score=65.39 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC---ceEEE
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP---SLAFH 278 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p---~~~f~ 278 (355)
.+.-+...+.-+|..++|||+.+.+.....+-...+. ...-++.|+|+||+|++.....+...+.+..... ..+|.
T Consensus 63 ~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 63 FISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred HHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence 4444555677899999999997655443322222222 2234566999999999986554444444433221 34578
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.|+.++.|+++|.+.|.++.
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccCCCHHHHHHHHHHhh
Confidence 89999999999999999888
No 265
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00034 Score=71.51 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=81.5
Q ss_pred ccccCCcchhhhhhhhccccc-----hHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc----------
Q 018454 177 AEGVEGDGFRDLVRHTMFEKG-----QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC---------- 241 (355)
Q Consensus 177 ~~~~~~~~~~~~~~~~~f~~~-----~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~---------- 241 (355)
+...+.+||+-.+.++...+. .-.--++++.+.+..||+|++|+|+.....+.+..+.+.+..+.
T Consensus 308 ea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 308 EAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred eeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 334556677777777665543 11234588899999999999999996666666666666665421
Q ss_pred CCCcEEEEEeccCCCChhhHHHH--HHHHhh----hCCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 242 KHKHMILLLNKCDLVPAWATKGW--LRVLSK----EYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 242 ~~k~vILVlNK~DLvp~~~~~~w--~~~l~~----~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
..+++|+|+||+|++++.....| +.+... .++. ...+|++++.|++.|.+.|.+.+.
T Consensus 388 ~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i-~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI-VVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred cccceEEEechhhccCccccccCCceeccccccCcccce-EEEeeechhhhHHHHHHHHHHHHH
Confidence 22789999999999986322233 122222 2332 234799999999999998766553
No 266
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.39 E-value=0.00054 Score=63.95 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=40.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+..++...+..+|.+|+|+|+.+........+.+.... .++|+|+|+||+|+.
T Consensus 86 f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 86 FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 55567788999999999999998765544444444433 468999999999986
No 267
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.38 E-value=0.00031 Score=62.76 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=30.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.+.|.++|.+|||||||+|.|.+.....+.|..|.+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~ 52 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPT 52 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccc
Confidence 35688999999999999999999987665555555544
No 268
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.38 E-value=0.0011 Score=69.57 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
+..+++..+..+|.+|+|+|+.+........+.+.... .+.|+++++||+|+..
T Consensus 92 f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 92 FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 44567778889999999999988664443444444433 5899999999999854
No 269
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.36 E-value=0.00085 Score=62.44 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE-EEEEeccCCCChh-hHHHHHHHHhh-----hCC-ce
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLNKCDLVPAW-ATKGWLRVLSK-----EYP-SL 275 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v-ILVlNK~DLvp~~-~~~~w~~~l~~-----~~p-~~ 275 (355)
..+...+..+|+|++|+|+..+....+..+...+.. .++|. |+|+||+|+++.. ........+.. ..+ ..
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~k 172 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAK 172 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 455566788999999999998776666666666654 46775 4599999998432 23333333322 222 45
Q ss_pred EEEeeecCCC
Q 018454 276 AFHASINKSF 285 (355)
Q Consensus 276 ~f~vSa~~~~ 285 (355)
++.+||+++-
T Consensus 173 i~~iSa~~~~ 182 (225)
T cd01882 173 LFYLSGIVHG 182 (225)
T ss_pred EEEEeeccCC
Confidence 7788988763
No 270
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.32 E-value=0.0016 Score=66.81 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCc-EEEEEeccCC--CC--hhhHHH
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MILLLNKCDL--VP--AWATKG 263 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~-vILVlNK~DL--vp--~~~~~~ 263 (355)
+|| .++...+...+..+|++|+|+|+.+... ........++.. .++| +|+++||+|+ +. ......
T Consensus 93 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~~~~~~~~~ 169 (446)
T PTZ00141 93 PGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVNYSQERYDE 169 (446)
T ss_pred CCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccchhhHHHHHH
Confidence 454 4567778888999999999999987642 112222223332 3555 6799999994 32 222222
Q ss_pred ----HHHHHhhh-C---CceEEEeeecCCCChH------------HHHHHHHHH
Q 018454 264 ----WLRVLSKE-Y---PSLAFHASINKSFGKG------------SLLSVLRQF 297 (355)
Q Consensus 264 ----w~~~l~~~-~---p~~~f~vSa~~~~Gi~------------~Ll~~L~q~ 297 (355)
....+... + ...++++|+.+|.|+. .|++.|..+
T Consensus 170 i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 170 IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred HHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 22233222 1 2456789999999985 477777654
No 271
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.31 E-value=0.00095 Score=65.38 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=39.1
Q ss_pred CcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 244 k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+|.++|+||+|++..+......+. . ..+.+||..++|+++|.+.|-..+.
T Consensus 240 ~p~l~v~NKiD~~~~e~~~~l~~~----~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 240 KPALYVVNKIDLPGLEELERLARK----P--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeEEEEecccccCHHHHHHHHhc----c--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 899999999999986544433332 2 4577899999999999999877765
No 272
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.27 E-value=0.00045 Score=60.92 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=30.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
...+|.++|.+|||||||||+|.......+.|..|.+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~ 50 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN 50 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc
Confidence 3578999999999999999999877666667777765
No 273
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.25 E-value=0.0011 Score=65.68 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=52.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----------CCceEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----------YPSLAF 277 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----------~p~~~f 277 (355)
++..+|++|+|++ |....+. .+..-+. ...-|+|+||+|+++..........+... ....++
T Consensus 166 i~~~aD~vlvv~~---p~~gd~iq~~k~gi~----E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi 238 (332)
T PRK09435 166 VAGMVDFFLLLQL---PGAGDELQGIKKGIM----ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVL 238 (332)
T ss_pred HHHhCCEEEEEec---CCchHHHHHHHhhhh----hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEE
Confidence 4678999999975 2222111 1111011 12349999999998754333333333221 113467
Q ss_pred EeeecCCCChHHHHHHHHHHHhh
Q 018454 278 HASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.+|+.++.|+++|++.|.++.+.
T Consensus 239 ~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 239 TCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999988763
No 274
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00086 Score=61.04 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=62.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+...++.+|+|.|+.+..+. ..+..++.+ . .++.-+.||.||+||... .+..+-...+.+......|..||++
T Consensus 74 YyRgA~AAivvYDit~~~SF--~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKT 151 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESF--EKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKT 151 (200)
T ss_pred eecCCcEEEEEEecccHHHH--HHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccc
Confidence 45678999999999987543 234444443 2 233445679999999873 3322223334444566778899999
Q ss_pred CCChHHHHHHHHHHHhhh
Q 018454 284 SFGKGSLLSVLRQFARLK 301 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~~ 301 (355)
+.|+++|+..|.+.++..
T Consensus 152 g~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 152 GENVNEIFQAIAEKLPCS 169 (200)
T ss_pred ccCHHHHHHHHHHhccCc
Confidence 999999999998777643
No 275
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.20 E-value=0.0025 Score=66.74 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+|+ ..+..+++..+..+|.+|+|+|+.+........+.+.+.. .++|+|+++||+|+.
T Consensus 88 PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred CCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 444 3555677888999999999999987654443444444433 578999999999985
No 276
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0018 Score=63.38 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=59.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHH---HHHHhhhC--CceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGW---LRVLSKEY--PSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w---~~~l~~~~--p~~~f~vS 280 (355)
.-.+-.|-.|+|++|..|- ..+.--+.++.- ...-+++|+|=||+||+.++.. +.+ +++++... ...++++|
T Consensus 105 sGAAlMDgAlLvIaANEpc-PQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiS 183 (415)
T COG5257 105 SGAALMDGALLVIAANEPC-PQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPIS 183 (415)
T ss_pred cchhhhcceEEEEecCCCC-CCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeeh
Confidence 3445568899999998652 222222222211 1245889999999999987543 222 22222111 23467889
Q ss_pred ecCCCChHHHHHHHHHHHhh
Q 018454 281 INKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~ 300 (355)
|..+.+++.|++.|.++.+.
T Consensus 184 A~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 184 AQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred hhhccCHHHHHHHHHHhCCC
Confidence 99999999999999999874
No 277
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.18 E-value=0.00049 Score=60.35 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=31.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
..++|.++|.+|||||||+|+|.+.....+.|..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~ 49 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ 49 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc
Confidence 4578999999999999999999988766677777743
No 278
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.002 Score=66.80 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=62.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC--------CceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY--------PSLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~--------p~~~f~vS 280 (355)
-..-.|+|++||-|.|.....-.+..++.+. .+.|+|+.+||||- |....++....|.... -+.++.+|
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDk-p~a~pekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDK-PGANPEKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCC-CCCCHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence 3456799999999998765444444444443 68999999999995 3334455555554432 25678999
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
|++|.|++.|.+.+.-.+.
T Consensus 298 Al~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLLAE 316 (683)
T ss_pred cccCCChHHHHHHHHHHHH
Confidence 9999999999887654443
No 279
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0025 Score=58.23 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCc
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPS 274 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~ 274 (355)
.|+..-+..+..+++-||+|.|..+-.+.. .+..|+.+ . ..+.+.+||.|||||...... ..-.+.|...++.
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~--~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~ 146 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFN--NVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI 146 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhh--hHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCC
Confidence 555566677889999999999998754432 34444443 2 245799999999999765432 1222344444554
Q ss_pred e-EEEeeecCCCChHHHHHHHHHHHh
Q 018454 275 L-AFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 275 ~-~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
. .+..||+++.++++.+..|...+.
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 147 PIFLETSAKDSTNVEDAFLTLAKELK 172 (205)
T ss_pred cceeecccCCccCHHHHHHHHHHHHH
Confidence 4 667899999999998887765543
No 280
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.13 E-value=0.0028 Score=57.87 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=68.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+..+|.+|+|+|..+.... ..+..++ .....+.|+++|+||+|+........... +........+.+|++++.
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITY--KNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQIT-FHRKKNLQYYDISAKSNY 154 (215)
T ss_pred HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHH-HHHHcCCEEEEEeCCCCC
Confidence 45678999999999876532 2222332 22235789999999999975432222222 223344567789999999
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCC-----CChhHH
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPN-----VGKSSV 322 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pN-----VGKSSL 322 (355)
|+++++..|.+.+.. ...+.++.-|= +|-.-.
T Consensus 155 ~v~~~f~~ia~~l~~-----~p~~~~ldEp~~~~~~~~ld~~ 191 (215)
T PTZ00132 155 NFEKPFLWLARRLTN-----DPNLVFVGAPALAPEEIQIDPE 191 (215)
T ss_pred CHHHHHHHHHHHHhh-----cccceecCCcccCCCccccCHH
Confidence 999988877655432 24567777776 664443
No 281
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.11 E-value=0.00073 Score=67.74 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
++.+....|++.+... +..++.|+|+|-+|+|||||||+|++
T Consensus 16 ~~~~~~s~i~~~l~~~-~~~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 16 NLQEVVSKIREALKDI-DNAPLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp -HHHHHHHHHHHHHHH-HH--EEEEEEESTTSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh-hcCceEEEEECCCCCCHHHHHHHHhC
Confidence 3444444555444322 24679999999999999999999987
No 282
>PLN03118 Rab family protein; Provisional
Probab=97.11 E-value=0.00081 Score=61.27 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
..++|.|||.+|||||||||+|........+|..|.+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~ 49 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVD 49 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeE
Confidence 3578999999999999999999987766667766754
No 283
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.10 E-value=0.00079 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEeecCCCChhHHHHHhhccCcc
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
+|.++|.+||||||||++|.+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 4789999999999999999987765
No 284
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.10 E-value=0.00034 Score=59.05 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEeecCCCChhHHHHHhhccCc
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
+|.+||.||||||||+|+|.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 478999999999999999998653
No 285
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.0014 Score=66.99 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=65.0
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh---CCceEEEee
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE---YPSLAFHAS 280 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~---~p~~~f~vS 280 (355)
-++.+.++.|.-.|+||||...... ..+.+.-.....+..+|-|+||+||-.. ..++....+... .+..++.+|
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveA--QTlAN~YlAle~~LeIiPViNKIDLP~A-dpervk~eIe~~iGid~~dav~~S 167 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEA--QTLANVYLALENNLEIIPVLNKIDLPAA-DPERVKQEIEDIIGIDASDAVLVS 167 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHH--HHHHHHHHHHHcCcEEEEeeecccCCCC-CHHHHHHHHHHHhCCCcchheeEe
Confidence 3445578899999999999876432 2333322222257889999999998433 334444444443 245678899
Q ss_pred ecCCCChHHHHHHHHHHHhh
Q 018454 281 INKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~ 300 (355)
|++|.|++++++.+.+..+.
T Consensus 168 AKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 168 AKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cccCCCHHHHHHHHHhhCCC
Confidence 99999999999999887763
No 286
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.08 E-value=0.0007 Score=59.57 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=28.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
+.++|.++|.+||||||||++|.......+.|..|.+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~ 44 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN 44 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccc
Confidence 4578999999999999999999876555444444544
No 287
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0027 Score=55.63 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCC--CCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHH-----Hhhh
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDP--QGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRV-----LSKE 271 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp--~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~-----l~~~ 271 (355)
+-.|+. +.++.|.||+|||..|- .+..-.++...+.+ +..+-.+++++||.|..-.....+.... ++.
T Consensus 76 rPyWRc---Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~- 151 (182)
T KOG0072|consen 76 RPYWRC---YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD- 151 (182)
T ss_pred cHHHHH---HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh-
Confidence 456776 66889999999999754 33333344444444 4467778999999998644332222222 222
Q ss_pred CCceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 272 YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
....+|..||.++.|++..+++|.+-++
T Consensus 152 r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 152 RIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred heeEEEeeccccccCCcHHHHHHHHHHh
Confidence 2356788999999999999999986553
No 288
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.05 E-value=0.0037 Score=64.25 Aligned_cols=101 Identities=18% Similarity=0.092 Sum_probs=60.1
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCC----cchHHHHHHH-hhcCCC-cEEEEEeccCCCCh-hh-------H
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT----RCHHLERHLK-EHCKHK-HMILLLNKCDLVPA-WA-------T 261 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s----~~~~l~~~L~-~~~~~k-~vILVlNK~DLvp~-~~-------~ 261 (355)
+|| .++...+...+..+|.+|+|+|+.+.... ......+.+. ....+. ++|+++||+|+.+. +. .
T Consensus 93 PGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~ 171 (447)
T PLN00043 93 PGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIV 171 (447)
T ss_pred CCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHH
Confidence 454 45666777788999999999999874211 0112222221 112456 46889999998732 11 2
Q ss_pred HHHHHHHhhhC----CceEEEeeecCCCChH------------HHHHHHHHH
Q 018454 262 KGWLRVLSKEY----PSLAFHASINKSFGKG------------SLLSVLRQF 297 (355)
Q Consensus 262 ~~w~~~l~~~~----p~~~f~vSa~~~~Gi~------------~Ll~~L~q~ 297 (355)
++....+.... ...++.+|+.+|.|+. .|++.|.++
T Consensus 172 ~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i 223 (447)
T PLN00043 172 KEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQI 223 (447)
T ss_pred HHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhc
Confidence 22333333322 1446788999999873 477777654
No 289
>PRK12740 elongation factor G; Reviewed
Probab=97.05 E-value=0.0027 Score=68.20 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=39.9
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
+..++...+..+|++|+|+|+.+........+...+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 44566677889999999999988664444444444443 4789999999999864
No 290
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.003 Score=67.54 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=62.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh------------------hHHHHHHHHh-
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW------------------ATKGWLRVLS- 269 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~------------------~~~~w~~~l~- 269 (355)
-...||++|+|+|..+.+...-.+-.+.|+. .+.|+|+.|||+|.+-.| ++.++..++.
T Consensus 560 gsslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ 637 (1064)
T KOG1144|consen 560 GSSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNN 637 (1064)
T ss_pred cccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 4578999999999987765544444556665 689999999999976322 1222332221
Q ss_pred ------hh------C--------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 270 ------KE------Y--------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 270 ------~~------~--------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
++ | .+.+++.||-+|.|+.+|+-+|.++.+
T Consensus 638 ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 638 IIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 11 0 134567899999999999999988766
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.01 E-value=0.0016 Score=59.70 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=50.5
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE--EEEEeccCCCCh--hhHHHHHHHHhhhCC-ceEEEeeecCCCCh
Q 018454 213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM--ILLLNKCDLVPA--WATKGWLRVLSKEYP-SLAFHASINKSFGK 287 (355)
Q Consensus 213 sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v--ILVlNK~DLvp~--~~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi 287 (355)
+|.+|.|+|+.+...... .+ . .+... ++|+||+|+.+. ...+...+.+....| ..+|.+|+++|.|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~----~~-~---~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR----KG-G---PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred hCcEEEEEEcchhhhhhh----hh-H---hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 477999999876443111 10 0 12334 899999999852 222222333333233 45788999999999
Q ss_pred HHHHHHHHHHH
Q 018454 288 GSLLSVLRQFA 298 (355)
Q Consensus 288 ~~Ll~~L~q~~ 298 (355)
++++++|.+++
T Consensus 185 ~el~~~i~~~~ 195 (199)
T TIGR00101 185 DTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHhhc
Confidence 99999998765
No 292
>PRK00007 elongation factor G; Reviewed
Probab=96.97 E-value=0.0026 Score=68.71 Aligned_cols=71 Identities=18% Similarity=0.100 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~ 270 (355)
+|+. .+..++...+..+|++|+|+|+..........+..++.. .++|+|+++||+|+.... .....+.+.+
T Consensus 83 PG~~-~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~~~-~~~~~~~i~~ 153 (693)
T PRK00007 83 PGHV-DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTGAD-FYRVVEQIKD 153 (693)
T ss_pred CCcH-HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 4443 344578888999999999999998877767777777665 578999999999998644 2333344433
No 293
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.97 E-value=0.0007 Score=60.08 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=27.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
+..+|+++|.+|||||||||+|.+.....+.|..|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~ 52 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLH 52 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccC
Confidence 46788999999999999999999866544444444
No 294
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.96 E-value=0.0017 Score=58.04 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=29.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt 340 (355)
++.++|.++|.+||||||||+.+.........|..|.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~ 51 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGF 51 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCcccc
Confidence 4568999999999999999999976555555555554
No 295
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.95 E-value=0.0059 Score=55.32 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=56.6
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhh-----
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKE----- 271 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~----- 271 (355)
+..+|++|+|.|. +....+..+.+.+.. .++++++|+||+|+..... .....+.+...
T Consensus 78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 78 FSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred ccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 5678999998653 345566667777765 3789999999999963211 11222222211
Q ss_pred -CCceEEEeeec--CCCChHHHHHHHHHHHhh
Q 018454 272 -YPSLAFHASIN--KSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 272 -~p~~~f~vSa~--~~~Gi~~Ll~~L~q~~~~ 300 (355)
....+|.+|+. .++|+..|.+.|..-++.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 12356777887 578999999888776654
No 296
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0015 Score=69.36 Aligned_cols=85 Identities=25% Similarity=0.202 Sum_probs=62.2
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
+..|+||.|+||.+.. ++-.+-=.+.+ -++|+|+++|.+|...+....=-.+.+++...+.++..||++|.|+++|
T Consensus 80 ~~~D~ivnVvDAtnLe--RnLyltlQLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l 155 (653)
T COG0370 80 GKPDLIVNVVDATNLE--RNLYLTLQLLE--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEEL 155 (653)
T ss_pred CCCCEEEEEcccchHH--HHHHHHHHHHH--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 5679999999998753 22222222333 5899999999999877654433345666667777888999999999999
Q ss_pred HHHHHHHHh
Q 018454 291 LSVLRQFAR 299 (355)
Q Consensus 291 l~~L~q~~~ 299 (355)
++.+.....
T Consensus 156 ~~~i~~~~~ 164 (653)
T COG0370 156 KRAIIELAE 164 (653)
T ss_pred HHHHHHhcc
Confidence 998876543
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.93 E-value=0.004 Score=56.96 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=50.4
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC-ceEEEeeecCCCChHHH
Q 018454 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-SLAFHASINKSFGKGSL 290 (355)
Q Consensus 214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi~~L 290 (355)
+..+.|+|+.+.... +..+... ..++.++|+||+|+++.. ......+.+....+ ..++.+|++++.|+++|
T Consensus 125 ~~~i~Vvd~~~~d~~----~~~~~~~--~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l 198 (207)
T TIGR00073 125 HMRVVLLSVTEGDDK----PLKYPGM--FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEW 198 (207)
T ss_pred CeEEEEEecCcccch----hhhhHhH--HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHH
Confidence 445678887654322 1111111 246789999999998642 23344444544443 45788899999999999
Q ss_pred HHHHHHH
Q 018454 291 LSVLRQF 297 (355)
Q Consensus 291 l~~L~q~ 297 (355)
++.+.++
T Consensus 199 ~~~i~~~ 205 (207)
T TIGR00073 199 LEFLEGQ 205 (207)
T ss_pred HHHHHHh
Confidence 9998764
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.89 E-value=0.007 Score=61.92 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC---ChhhHHHHHHHHhhh-
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV---PAWATKGWLRVLSKE- 271 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv---p~~~~~~w~~~l~~~- 271 (355)
+|| ..+-.++.+++...|-||+||||.+.+...-..+.+--.+ .+.+.|+|+||+|-- |.++..+..+.|...
T Consensus 76 PGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 76 PGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELG 152 (603)
T ss_pred CCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 444 2455788889999999999999998766555555433222 578899999999975 455555555555432
Q ss_pred -----CCceEEEeeecCCC----------ChHHHHHHHHHHHhhh
Q 018454 272 -----YPSLAFHASINKSF----------GKGSLLSVLRQFARLK 301 (355)
Q Consensus 272 -----~p~~~f~vSa~~~~----------Gi~~Ll~~L~q~~~~~ 301 (355)
.-..++.+|+.+|+ .+..|++.|.++.+..
T Consensus 153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 12335567887765 4677888888887643
No 299
>PRK13351 elongation factor G; Reviewed
Probab=96.87 E-value=0.006 Score=65.78 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
+..++...+..+|.+|+|+|+.+........+...+.. .++|+++|+||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCC
Confidence 44566778899999999999988765444444444443 4789999999999875
No 300
>COG2262 HflX GTPases [General function prediction only]
Probab=96.83 E-value=0.00068 Score=68.09 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=23.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
.--.|++|||+|+|||||+|+|.+..+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~ 218 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVY 218 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCee
Confidence 4467899999999999999999976543
No 301
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.82 E-value=0.0023 Score=60.81 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=41.6
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
.+..++...+..+|.+|+|+|+.+........+.+++.. .++|.++|+||+|+...
T Consensus 76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCCC
Confidence 344567778889999999999988655444444444443 57899999999998754
No 302
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.80 E-value=0.0035 Score=67.71 Aligned_cols=53 Identities=25% Similarity=0.183 Sum_probs=41.8
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
.++...+..+|++|+|+|+.+........+..++.. .++|+++|+||+|+...
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 356678889999999999998766555556665554 47899999999999854
No 303
>PRK09866 hypothetical protein; Provisional
Probab=96.78 E-value=0.0025 Score=67.84 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=31.4
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
...++++|++|+|||||||+|.+..++.+++.|=+|
T Consensus 69 ~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~ 104 (741)
T PRK09866 69 EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTA 104 (741)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCccccCCCccccc
Confidence 478899999999999999999999988887666554
No 304
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=96.71 E-value=0.002 Score=66.59 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=61.9
Q ss_pred CcEEEEEeccCCCChhhH----HHHHHHHhhhC----CceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecC
Q 018454 244 KHMILLLNKCDLVPAWAT----KGWLRVLSKEY----PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYP 315 (355)
Q Consensus 244 k~vILVlNK~DLvp~~~~----~~w~~~l~~~~----p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~p 315 (355)
-.++.+.+++|+.++... .-|.....+.+ -..+..+|+++.+|..+|+...... ++..+.|+.||.+
T Consensus 244 p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~-----ag~~~~v~~vg~t 318 (572)
T KOG1249|consen 244 PKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGD-----AGKAGPVAAVGRT 318 (572)
T ss_pred cceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhc-----cccccchHHhhhh
Confidence 457889999999875421 11221111111 0122345788888877777655432 3567889999999
Q ss_pred CCChhHHHHHhhcc-----CccccCCCCCee
Q 018454 316 NVGKSSVINTLRTK-----NVILFFPASVVW 341 (355)
Q Consensus 316 NVGKSSLIN~Ll~~-----~~~~vs~iPGtT 341 (355)
|.|++++||++-.. ...+-+|.||||
T Consensus 319 ~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtT 349 (572)
T KOG1249|consen 319 FAGSEELINAMAKELHADVEALAEEPVPGTT 349 (572)
T ss_pred hhccchhhhhhhhhhccchhccccCCCCccc
Confidence 99999999999753 246678999998
No 305
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.70 E-value=0.0097 Score=53.15 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCc-c-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHH--HHHhh---h
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTR-C-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWL--RVLSK---E 271 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~-~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~--~~l~~---~ 271 (355)
+.+|+. +.+++|.+|+|+|..|+.-.. + .++...+.. ...+.+++++.||.|+.+.-..+... -.+.. .
T Consensus 74 r~~W~n---YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks 150 (185)
T KOG0073|consen 74 RSYWKN---YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKS 150 (185)
T ss_pred HHHHHH---hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccc
Confidence 455655 779999999999998875321 1 233344433 23468999999999997543222221 11222 2
Q ss_pred CCceEEEeeecCCCChHHHHHHHHHH
Q 018454 272 YPSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
.-..++.+|+.+|.++.+-+++|..-
T Consensus 151 ~~~~l~~cs~~tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 151 HHWRLVKCSAVTGEDLLEGIDWLCDD 176 (185)
T ss_pred cCceEEEEeccccccHHHHHHHHHHH
Confidence 33557788999998888877776543
No 306
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.68 E-value=0.0013 Score=63.10 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.3
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS 338 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP 338 (355)
...++.|.++|.+|+|||||||+|.......|+-+|
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg 71 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVG 71 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecc
Confidence 357899999999999999999999977666666555
No 307
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.63 E-value=0.0014 Score=70.07 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHhhhccccceEEEEeecCCCChhHHHHHhhccCcccc----------CCCCCee
Q 018454 296 QFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILF----------FPASVVW 341 (355)
Q Consensus 296 q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v----------s~iPGtT 341 (355)
++...+..+..++|++||.+|+|||||+|+|+......+ +..+|+|
T Consensus 14 ~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~t 69 (632)
T PRK05506 14 AYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQ 69 (632)
T ss_pred HHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCC
Confidence 333334456778999999999999999999998665544 3467876
No 308
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.012 Score=59.33 Aligned_cols=85 Identities=28% Similarity=0.346 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCC-------CCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH---HHH-
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQ-------GTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW---LRV- 267 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~-------~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w---~~~- 267 (355)
+.++.....-+..+|+.|+|+||+++. +... +++ +|.....-.++|+++||+|+++ |..+++ +..
T Consensus 96 rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tlGi~~lIVavNKMD~v~-wde~rf~ei~~~v 172 (428)
T COG5256 96 RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTLGIKQLIVAVNKMDLVS-WDEERFEEIVSEV 172 (428)
T ss_pred HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhcCCceEEEEEEcccccc-cCHHHHHHHHHHH
Confidence 667777777889999999999999873 2111 111 1222113467999999999987 433222 222
Q ss_pred --Hhhh--CC---ceEEEeeecCCCCh
Q 018454 268 --LSKE--YP---SLAFHASINKSFGK 287 (355)
Q Consensus 268 --l~~~--~p---~~~f~vSa~~~~Gi 287 (355)
|.+. +. ...+++|+.+|.++
T Consensus 173 ~~l~k~~G~~~~~v~FIPiSg~~G~Nl 199 (428)
T COG5256 173 SKLLKMVGYNPKDVPFIPISGFKGDNL 199 (428)
T ss_pred HHHHHHcCCCccCCeEEecccccCCcc
Confidence 2222 22 34678899988876
No 309
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.58 E-value=0.0043 Score=60.26 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=41.7
Q ss_pred CcEEEEEeccCCCCh--hhHHHHHHHHhhhCC-ceEEEeeecCCCChHHHHHHHHH
Q 018454 244 KHMILLLNKCDLVPA--WATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 244 k~vILVlNK~DLvp~--~~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
..-++|+||+||++. ...+...+.+....| ..+|.+|++++.|+++|+++|.+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999973 345556666666665 45788899999999999999875
No 310
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.54 E-value=0.011 Score=56.05 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=48.7
Q ss_pred HHHHHHHhhhc-CCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh
Q 018454 201 RIWGELYKVID-SSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE 271 (355)
Q Consensus 201 ri~~el~kvi~-~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~ 271 (355)
.+.+.+..+++ ..++||+|+|++..+...+ ..+.+++.. .++++|+|+||+|++.+.. .|.+.+...
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D~~~~~~--~~~~~~~~~ 218 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLDLMDEGT--DARDILENK 218 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCCCCCccH--HHHHHHhCC
Confidence 44456778888 5579999999986655544 466666665 5789999999999987542 277766554
No 311
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.51 E-value=0.0071 Score=55.21 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHhhhcCC-CEEEEEecCCCCCCCcchHHHHHH----Hh---hcCCCcEEEEEeccCCCChh
Q 018454 202 IWGELYKVIDSS-DVVVQVLDARDPQGTRCHHLERHL----KE---HCKHKHMILLLNKCDLVPAW 259 (355)
Q Consensus 202 i~~el~kvi~~s-DvVL~VvDardp~~s~~~~l~~~L----~~---~~~~k~vILVlNK~DLvp~~ 259 (355)
+...+...+..+ +.||+|+|+.+.... ...+..++ .. ...+.|+++|+||+||....
T Consensus 61 ~~~~~~~~~~~~~~~vV~VvD~~~~~~~-~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 61 LRDKLLETLKNSAKGIVFVVDSATFQKN-LKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHhccCCEEEEEEECccchhH-HHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 344555667777 999999999886422 12222222 21 12479999999999997543
No 312
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0086 Score=59.45 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHh---hh---CCceEE
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLS---KE---YPSLAF 277 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~---~~---~p~~~f 277 (355)
..--...||+.|++||||....+.... ..+|.....=+++|+.+||+||+.-. ..+.....|. .. .....+
T Consensus 103 MaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~I 181 (431)
T COG2895 103 MATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFI 181 (431)
T ss_pred hhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 334568899999999999765432211 11222222457899999999999632 2333333221 22 234567
Q ss_pred EeeecCCCCh------------HHHHHHHHHH
Q 018454 278 HASINKSFGK------------GSLLSVLRQF 297 (355)
Q Consensus 278 ~vSa~~~~Gi------------~~Ll~~L~q~ 297 (355)
++||..|.++ ..|++.|...
T Consensus 182 PiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v 213 (431)
T COG2895 182 PISALLGDNVVSKSENMPWYKGPTLLEILETV 213 (431)
T ss_pred echhccCCcccccccCCCcccCccHHHHHhhc
Confidence 7898887765 3567766644
No 313
>PLN03110 Rab GTPase; Provisional
Probab=96.50 E-value=0.0052 Score=56.51 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCe
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVV 340 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGt 340 (355)
..++|.+||.+||||||||++|.+.... ...|..|.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~ 47 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV 47 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeE
Confidence 3578999999999999999999986643 23343443
No 314
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=96.47 E-value=0.007 Score=53.81 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=58.8
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
...++-+|+|.|..|-.+. ..+-.|+.+ . .....+++|.||+||-... +...-...+.+.-....++.||+.+
T Consensus 83 YRgSnGalLVyDITDrdSF--qKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSF--QKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred EeCCCceEEEEeccchHHH--HHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 3568899999999886543 344445443 1 2346789999999995432 2222222232222344567899999
Q ss_pred CChHHHHHHHHHHHhhhc
Q 018454 285 FGKGSLLSVLRQFARLKS 302 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~ 302 (355)
.|+.+|+..|.+..-++.
T Consensus 161 ~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 161 VGISELFESLTAKMIEHS 178 (218)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999998877665543
No 315
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.46 E-value=0.0066 Score=53.93 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.++|.++|.+|+||||+++.|.......+.|.-|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~ 49 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN 49 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccc
Confidence 57899999999999999999999988777788877765
No 316
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.44 E-value=0.0077 Score=44.57 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCEEEEEecCCCCCCCcc---hHHHHHHHhhcCCCcEEEEEeccC
Q 018454 213 SDVVVQVLDARDPQGTRC---HHLERHLKEHCKHKHMILLLNKCD 254 (355)
Q Consensus 213 sDvVL~VvDardp~~s~~---~~l~~~L~~~~~~k~vILVlNK~D 254 (355)
.++|++++|...--|..- ..+.+.++....++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 489999999875444321 245566666667999999999998
No 317
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.0084 Score=52.75 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=61.7
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..++.+|++.|..+..+. ..+..|+-. ...+.++|+|.||||+-.+.++ .+-...+..+.....|..|++
T Consensus 89 ayyRgamgfiLmyDitNeeSf--~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK 166 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESF--NSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAK 166 (193)
T ss_pred HHhhccceEEEEEecCCHHHH--HHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccc
Confidence 456789999999999875432 234455432 1247899999999999765432 233344445555567888999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
.+.+++++++.|....
T Consensus 167 ~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 167 ENINVKQVFERLVDII 182 (193)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999988776543
No 318
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.41 E-value=0.0045 Score=55.29 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=30.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+..+|.++|.+|||||||++.|.......+.|..|..
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~ 52 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN 52 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCccee
Confidence 34578999999999999999999876555555666654
No 319
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.38 E-value=0.016 Score=55.40 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
+..+++..+..+|.+|+|+|+.+........+.++... .++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 34556677889999999999987654333344444432 57999999999998654
No 320
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.31 E-value=0.0054 Score=54.20 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=26.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
+.++|.++|.+||||||||+.|........-|..|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~ 46 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIG 46 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc
Confidence 45889999999999999999997554444334334
No 321
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.26 E-value=0.026 Score=57.58 Aligned_cols=89 Identities=27% Similarity=0.331 Sum_probs=57.3
Q ss_pred HHhhhc-CCCEEEEEe-cCC------CCCCCcchHHHHHHHhhcCCCcEEEEEeccC-CCChhhHHHHHHHHhhhCCceE
Q 018454 206 LYKVID-SSDVVVQVL-DAR------DPQGTRCHHLERHLKEHCKHKHMILLLNKCD-LVPAWATKGWLRVLSKEYPSLA 276 (355)
Q Consensus 206 l~kvi~-~sDvVL~Vv-Dar------dp~~s~~~~l~~~L~~~~~~k~vILVlNK~D-Lvp~~~~~~w~~~l~~~~p~~~ 276 (355)
+.++|. .+|+.|+|. |+. +........+...|++ .++|+|+|+||+| +.+. ...+.+.+...|.+.+
T Consensus 137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~--~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv 212 (492)
T TIGR02836 137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE--LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV 212 (492)
T ss_pred HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh--cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence 456887 999999999 884 3333334455555555 6899999999999 4443 3445556666665545
Q ss_pred EEeeecCCCChHHHHHHHHHHHh
Q 018454 277 FHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+.+|+. ....+++...|++.+-
T Consensus 213 l~v~c~-~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 213 LAMDVE-SMRESDILSVLEEVLY 234 (492)
T ss_pred EEEEHH-HcCHHHHHHHHHHHHh
Confidence 555653 2455566666665554
No 322
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.02 Score=50.51 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCC-CcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceE
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKH-KHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLA 276 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~-k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~ 276 (355)
.|+..-+..+..++..+|+|.|..-.++..| +++.+.|.....+ .--|+|.||+|+... ++....-+.+++..-...
T Consensus 67 erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 67 ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 3445555667788999999999987666655 5555555442222 334899999999765 333444444544422223
Q ss_pred EEeeecCCCChHHHHHHHH
Q 018454 277 FHASINKSFGKGSLLSVLR 295 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~ 295 (355)
+..|++...+++.|+..+.
T Consensus 147 letsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhcccchhhHHHHHHHHH
Confidence 4569999999998876553
No 323
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.0092 Score=53.77 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCC-cc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHh--hhC--
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGT-RC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KEY-- 272 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s-~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~--~~~-- 272 (355)
+.+|...| ..+..||+|+||.|+.-. .+ ..+++.+.. ...+.|+++.+||-|+-......+....+. +..
T Consensus 83 rSlw~~yY---~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~ 159 (197)
T KOG0076|consen 83 RSLWKKYY---WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPR 159 (197)
T ss_pred HHHHHHHH---HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCC
Confidence 55676644 678999999999985321 11 223333332 236899999999999987766665555554 221
Q ss_pred Cc-eEEEeeecCCCChHHHHHHHHHHHh
Q 018454 273 PS-LAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 273 p~-~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
++ ...++|+.+|.|+++-+.++..-.+
T Consensus 160 rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 160 RDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred ccCccccchhhhcccHHHHHHHHHHHHh
Confidence 22 2346799999999998888876654
No 324
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.18 E-value=0.0068 Score=61.65 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=30.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc----Ccc-----------ccCCCCC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK----NVI-----------LFFPASV 339 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~----~~~-----------~vs~iPG 339 (355)
..+-+|++|.-|+|||||||++.+. ... -+++.||
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~G 65 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAG 65 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCC
Confidence 4588999999999999999999997 555 6788899
No 325
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.18 E-value=0.0064 Score=49.85 Aligned_cols=48 Identities=33% Similarity=0.497 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEec
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK 252 (355)
.+.++.+.+..+|++++|+|+.++.......+.+++. .++|+++|+||
T Consensus 69 ~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 69 EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 5566777889999999999988854444456666664 57999999998
No 326
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.17 E-value=0.0029 Score=62.08 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.-.|.+|||+|+|||||||+|.+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~ 200 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTK 200 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHh
Confidence 45678999999999999999985
No 327
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.13 E-value=0.031 Score=55.04 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHHHHhhhcC-CCEEEEEecCCCCCCCc---chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceE
Q 018454 201 RIWGELYKVIDS-SDVVVQVLDARDPQGTR---CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLA 276 (355)
Q Consensus 201 ri~~el~kvi~~-sDvVL~VvDardp~~s~---~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~ 276 (355)
.+-+++.-++.. .++||+++|.+.--+-. -.+|.+.++... ..|+++|+||+|+...+..++....+........
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~ 313 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-KAPIVVVINKIDIADEEKLEEIEASVLEEGGEEP 313 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-CCCeEEEEecccccchhHHHHHHHHHHhhccccc
Confidence 344555545543 48999999987533321 234555555543 4899999999999977766666655655554545
Q ss_pred EEeeecCCCChHHHHHHHHHH
Q 018454 277 FHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
..+++..+.+.+.+...+...
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cceeeeehhhHHHHHHHHHHH
Confidence 566888888888777766554
No 328
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.11 E-value=0.031 Score=51.18 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=60.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|..++|.+..|..+..+ ..+...|.. .....|+|+|.||+||.. ..+..+--..+...+....+.+||+.+
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 5777899999999988765433 233333322 123469999999999976 233222233444445455677899999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.++++++..|.....
T Consensus 151 ~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 151 YNVDEVFYELVREIR 165 (196)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988766554
No 329
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.035 Score=55.16 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC---CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHH--
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ---GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLR-- 266 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~---~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~-- 266 (355)
+||+. .++-+.--..-.|+.++|+|+.... ...|..+-+. ..+.+|+|+||+|++|+.... +...
T Consensus 78 PGHas-LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 78 PGHAS-LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred CCcHH-HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 45542 4444444455669999999987543 3334333322 247899999999999974322 2222
Q ss_pred --HHhhh---CCceEEEeeecCC----CChHHHHHHHHHHH
Q 018454 267 --VLSKE---YPSLAFHASINKS----FGKGSLLSVLRQFA 298 (355)
Q Consensus 267 --~l~~~---~p~~~f~vSa~~~----~Gi~~Ll~~L~q~~ 298 (355)
.+... ....++.+|+..| .++.+|.+.|+...
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 22221 1245677899988 66777777776544
No 330
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.012 Score=52.69 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChh--hHHHHHHHHhhh
Q 018454 197 GQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKE 271 (355)
Q Consensus 197 ~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~ 271 (355)
.|+++.|++ .+..+|.||+++|+-|..-..+ .+++..+.- .....|++++.||+|..... ..-.|...+...
T Consensus 75 ~qArr~wkd---yf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~ 151 (193)
T KOG0077|consen 75 LQARRVWKD---YFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNF 151 (193)
T ss_pred HHHHHHHHH---HHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHH
Confidence 356777776 7888999999999988753222 233333332 23579999999999986532 223344333221
Q ss_pred --------------CCceEEEeeecCCCChHHHHHHHHHH
Q 018454 272 --------------YPSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 272 --------------~p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
.|..+|.+|...+.|..+-+.+|.++
T Consensus 152 t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 152 TTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred hcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 25668889988888877777776654
No 331
>CHL00071 tufA elongation factor Tu
Probab=96.03 E-value=0.0087 Score=60.66 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=24.4
Q ss_pred cccceEEEEeecCCCChhHHHHHhhcc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..++|+++|.+|+|||||+|+|++.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 356799999999999999999999975
No 332
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.02 Score=51.80 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=59.6
Q ss_pred hhcCCCEEEEEecCCCCCC--CcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEeee
Q 018454 209 VIDSSDVVVQVLDARDPQG--TRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHASI 281 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~--s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vSa 281 (355)
+..+.+.||+|||+.|..- ..-.++.+.+.. +..+.|+++..||.|+-..-...+.-+.+.-. .+..+..++|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 6789999999999988642 111233333333 22578899999999986433333333333211 3445566789
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+|.|+.+.+++|.+.+.
T Consensus 161 ~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 999999999999887653
No 333
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=95.99 E-value=0.0063 Score=58.62 Aligned_cols=38 Identities=29% Similarity=0.264 Sum_probs=30.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc--ccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI--LFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~--~vs~iPGtT 341 (355)
++...+.++|.+|||||||||.|.+.+.. +.++-||-|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T 173 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT 173 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc
Confidence 34578899999999999999999986643 345578876
No 334
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.95 E-value=0.011 Score=58.01 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc-C----CCcEEEEEeccCCCChhhHHHHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-K----HKHMILLLNKCDLVPAWATKGWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~-~----~k~vILVlNK~DLvp~~~~~~w~~~l~ 269 (355)
+.+....++.+.+-+..||++|||+|..+|....- ..++.-+.... + ....|=|-||+|..+.....
T Consensus 241 P~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------- 313 (410)
T KOG0410|consen 241 PIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------- 313 (410)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------
Confidence 55667889999999999999999999999975432 23444444310 1 12245577888876543211
Q ss_pred hhCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 270 KEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 270 ~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
-+...+.+||.+|.|+++|++.+..-.
T Consensus 314 --E~n~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 314 --EKNLDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred --ccCCccccccccCccHHHHHHHHHHHh
Confidence 122245679999999999999887554
No 335
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.92 E-value=0.012 Score=54.20 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT 341 (355)
...++|.+||.+||||||||+++..... -...|..|.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~ 49 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE 49 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee
Confidence 4568999999999999999999876543 3456666655
No 336
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.90 E-value=0.031 Score=60.92 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=40.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+..++...+..+|.+|+|+|+..........+.+.... .+.|.|+++||+|+.
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL 152 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence 45677788899999999999988765555555555433 367889999999986
No 337
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=95.87 E-value=0.029 Score=62.04 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+|| ..+..++...+..+|.+|+|+|+.++.......+.+.+.. .++|+|+++||+|+.
T Consensus 106 PGh-~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 106 PGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCH-HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 565 5567778888999999999999998877666666666654 578999999999998
No 338
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.027 Score=51.35 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCc
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPS 274 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~ 274 (355)
.++..-+......+.-+|+|.|...-.+. .+|..+|.. + ..+.-++|+.||+||.... +..+--+.+.+++..
T Consensus 66 e~frsv~~syYr~a~GalLVydit~r~sF--~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL 143 (216)
T KOG0098|consen 66 ESFRSVTRSYYRGAAGALLVYDITRRESF--NHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL 143 (216)
T ss_pred HHHHHHHHHHhccCcceEEEEEccchhhH--HHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc
Confidence 44455555677888889999998654322 355556543 2 3678889999999997532 223333445555666
Q ss_pred eEEEeeecCCCChHHHHHHH
Q 018454 275 LAFHASINKSFGKGSLLSVL 294 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L 294 (355)
+.+..||+++.|+++.+.-.
T Consensus 144 ifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 144 IFMETSAKTAENVEEAFINT 163 (216)
T ss_pred eeehhhhhhhhhHHHHHHHH
Confidence 67788999999999876643
No 339
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.81 E-value=0.064 Score=52.09 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=52.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------HHHHhhh---CCceEEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------LRVLSKE---YPSLAFH 278 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------~~~l~~~---~p~~~f~ 278 (355)
++..+|.+++|.+ |... .++..+... ...++.++|+||+|+.+....... ...+... ....++.
T Consensus 144 i~~~aD~i~vv~~---~~~~--~el~~~~~~-l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 217 (300)
T TIGR00750 144 IANMADTFVVVTI---PGTG--DDLQGIKAG-LMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLT 217 (300)
T ss_pred HHHhhceEEEEec---CCcc--HHHHHHHHH-HhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEE
Confidence 5677899888853 3322 223333221 135888999999999875421110 1111111 1123688
Q ss_pred eeecCCCChHHHHHHHHHHHh
Q 018454 279 ASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+|+.++.|+++|++.|.++..
T Consensus 218 iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 218 TSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEccCCCCHHHHHHHHHHHHH
Confidence 999999999999999987643
No 340
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.79 E-value=0.0056 Score=63.36 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=25.7
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
.+..++|.+||.+|+|||||+++|+.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~ 53 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQ 53 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCC
Confidence 467799999999999999999999865433
No 341
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.79 E-value=0.056 Score=52.27 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=50.6
Q ss_pred CEEEEEecCCCC--CCCcchHHH---HHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-----------------
Q 018454 214 DVVVQVLDARDP--QGTRCHHLE---RHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----------------- 271 (355)
Q Consensus 214 DvVL~VvDardp--~~s~~~~l~---~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----------------- 271 (355)
-+|++|+|.-.. +.++-..+. .++-+ ...|+|+|+||+|+....-..+|+..+...
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~ 226 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTR 226 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhh
Confidence 478999997422 112111111 12222 468999999999999887777787655321
Q ss_pred ---------C-CceEEEeeecCCCChHHHHHHHHHHH
Q 018454 272 ---------Y-PSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 272 ---------~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
| ..-.+-+|+.+|.|.++++..+.+..
T Consensus 227 SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 227 SMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred hHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 0 11234568888888888777665443
No 342
>PTZ00416 elongation factor 2; Provisional
Probab=95.75 E-value=0.019 Score=63.41 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+|+ ..+..++...+..+|.+|+|+|+.+........+.+.+.. .++|+|+++||+|+.
T Consensus 100 PG~-~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGH-VDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred CCH-HhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 455 3466778889999999999999998877766677666654 468999999999997
No 343
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.64 E-value=0.01 Score=55.26 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=29.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc-CccccCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK-NVILFFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~-~~~~vs~iPGt 340 (355)
..+..|+++|.||+|||||+|+|.+. ...+++.++|+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~ 74 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP 74 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc
Confidence 45677899999999999999999975 44556666774
No 344
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.62 E-value=0.03 Score=53.01 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH-hhh--ccccceEEEEeecCCCChhHHHHHhhccC
Q 018454 288 GSLLSVLRQFA-RLK--SDKQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 288 ~~Ll~~L~q~~-~~~--~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
-.|++.|.++. ... ..-..-.+++||-+++||||+||+|.+..
T Consensus 5 ~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 5 IPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 34566665554 221 11233468999999999999999999865
No 345
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.031 Score=48.88 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=63.5
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCC--CCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CC
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQ--GTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YP 273 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~--~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p 273 (355)
..|+. +...+..+|+|+|+.+-. ...-.++.+.|.. +....++++..||-||-......+..+++.-+ .+
T Consensus 76 plWrh---Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~ 152 (180)
T KOG0071|consen 76 PLWRH---YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN 152 (180)
T ss_pred HHHHh---hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc
Confidence 34544 567788999999987642 1112234444443 34567889999999997654445555555322 35
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
..+..+++.++.|+.+-+.+|.+.+.
T Consensus 153 W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 153 WYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cEeeccccccchhHHHHHHHHHhhcc
Confidence 66778899999999888888877653
No 346
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.56 E-value=0.095 Score=47.19 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=61.4
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcC---CCcEEEEEeccCCCChhhHHHHH-------HHHhh
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK---HKHMILLLNKCDLVPAWATKGWL-------RVLSK 270 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~---~k~vILVlNK~DLvp~~~~~~w~-------~~l~~ 270 (355)
.+.+.+....+..|+||+|+|+.+ ....+..+.+.+.+... -+++|+|+|++|-+.....+.|+ ..+-+
T Consensus 72 ~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~ 150 (196)
T cd01852 72 EIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE 150 (196)
T ss_pred HHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH
Confidence 344444455678899999999988 55556666666654221 27899999999987654333222 22222
Q ss_pred hCCc--eEEEe---eecCCCChHHHHHHHHHHHhh
Q 018454 271 EYPS--LAFHA---SINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~~p~--~~f~v---Sa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.+.. ..|.- |+..+.++.+|++.+.+..++
T Consensus 151 ~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 151 KCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2221 12211 245667888899988888764
No 347
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.56 E-value=0.015 Score=50.95 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.++.++.|..++.......+-.+.++|.+|+|||+|++.+...
T Consensus 4 gR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 4 GREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp T-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 66677777777664223345567899999999999999998753
No 348
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=95.52 E-value=0.018 Score=54.60 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccc-------cCCCCCee
Q 018454 284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVIL-------FFPASVVW 341 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-------vs~iPGtT 341 (355)
-.|++.+++.++.-+- ..+-.-.|++||.++.|||||||+|-..++.. .-|+|-||
T Consensus 26 yvGidtI~~Qm~~k~m--k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~ 88 (336)
T KOG1547|consen 26 YVGIDTIIEQMRKKTM--KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTT 88 (336)
T ss_pred cccHHHHHHHHHHHHH--hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceE
Confidence 4589999988875442 22345789999999999999999998765443 12556665
No 349
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.51 E-value=0.021 Score=53.88 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=47.4
Q ss_pred HHHHhhhc--CCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChh--hHHHHHH---------
Q 018454 204 GELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAW--ATKGWLR--------- 266 (355)
Q Consensus 204 ~el~kvi~--~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~--~~~~w~~--------- 266 (355)
..+.+.+. ..=++|+++|+.-... ....+...+.. ..-+.|.|.|+||+||++.. ...+|..
T Consensus 112 ~~i~~~L~~~~~~~~v~LvD~~~~~~-~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~ 190 (238)
T PF03029_consen 112 RKIVERLQKNGRLVVVFLVDSSFCSD-PSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLL 190 (238)
T ss_dssp HHHHHTSSS----EEEEEE-GGG-SS-HHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHhhhcceEEEEEEecccccC-hhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHH
Confidence 34444444 3457899999874422 11122221111 11368999999999999832 1222211
Q ss_pred -----HH----hh---hC-Cc-eEEEeeecCCCChHHHHHHHHHHH
Q 018454 267 -----VL----SK---EY-PS-LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 267 -----~l----~~---~~-p~-~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.+ .. .+ .. ..+.+|+.++.|+++|+..+.+..
T Consensus 191 ~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 191 ESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 11 11 12 23 456789999999999999887654
No 350
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=95.51 E-value=0.031 Score=48.50 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCC-cchHHHHHHHhhc-CCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceE
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGT-RCHHLERHLKEHC-KHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLA 276 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~-~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~ 276 (355)
.|+..-+..+...+|.+++|.|..+..+. .|..+...|.+.. ....+.++.||||+.++.+. ..--+.+.+.|....
T Consensus 58 erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 58 ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPF 137 (192)
T ss_pred HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCc
Confidence 34445555677899999999999876543 3444554454411 23568899999999875432 222344555565556
Q ss_pred EEeeecCCCChHHHHHHHH
Q 018454 277 FHASINKSFGKGSLLSVLR 295 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~ 295 (355)
...|+++|++++--+-.|.
T Consensus 138 metsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 138 METSAKTGFNVDLAFLAIA 156 (192)
T ss_pred eeccccccccHhHHHHHHH
Confidence 6789999999986555444
No 351
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.46 E-value=0.012 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+.-+.|+|.||+|||||++.|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 45667899999999999999998643
No 352
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=95.36 E-value=0.022 Score=60.49 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWF 344 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~ 344 (355)
++..|+++|.+|+|||||||+|++..+.. ...+|.|.+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~i 124 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHI 124 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecc
Confidence 55678999999999999999999876443 4457877543
No 353
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.18 E-value=0.052 Score=53.41 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=41.6
Q ss_pred CCCcEEEEEeccCCCChhhHHHHHHHHhhhC-CceEEEeeecCCCChHHHHH-HHHHHHhhh
Q 018454 242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEY-PSLAFHASINKSFGKGSLLS-VLRQFARLK 301 (355)
Q Consensus 242 ~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~-p~~~f~vSa~~~~Gi~~Ll~-~L~q~~~~~ 301 (355)
..+|+|+|+||+|+...... .+.+.... ...++.+||+.+.++.+|.+ .+.++++..
T Consensus 213 t~KPvI~VlNK~Dl~~~~~~---~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 213 RSKPMVIAANKADIPDAENN---ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred cCCcEEEEEEHHHccChHHH---HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 46999999999998654332 22332233 34578899999999999998 598888753
No 354
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.09 E-value=0.019 Score=54.84 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=24.6
Q ss_pred HHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 292 SVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 292 ~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
++|..+.+. ..+...|||-|.||+||||||++|..
T Consensus 17 ~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 17 ELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 344444432 23568899999999999999999975
No 355
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.09 E-value=0.013 Score=47.69 Aligned_cols=45 Identities=33% Similarity=0.478 Sum_probs=30.6
Q ss_pred hcCCCEEEEEecCCCCCCCcc-hHHHHHHHh---hcCCCcEEEEEeccC
Q 018454 210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKE---HCKHKHMILLLNKCD 254 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~-~~l~~~L~~---~~~~k~vILVlNK~D 254 (355)
+..+|++|+|+|+.++..... ..+..++.. ..++.|+|||.||.|
T Consensus 71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 788999999999998752211 123333333 235799999999998
No 356
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.04 E-value=0.017 Score=47.31 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=19.2
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|+|.|.||||||||.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 357
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=95.00 E-value=0.29 Score=44.02 Aligned_cols=123 Identities=21% Similarity=0.142 Sum_probs=79.5
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh-----cCCCcE-EEEEeccCCCCh-hhHHHHHHHHhhhCC
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHM-ILLLNKCDLVPA-WATKGWLRVLSKEYP 273 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~-----~~~k~v-ILVlNK~DLvp~-~~~~~w~~~l~~~~p 273 (355)
++..-+..+..++=-+++|.|..+-.+ .++++.++.+. .+++++ .||..|+||... .+..+-.++|...+.
T Consensus 70 rfrsitksyyrnsvgvllvyditnr~s--fehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg 147 (213)
T KOG0091|consen 70 RFRSITKSYYRNSVGVLLVYDITNRES--FEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG 147 (213)
T ss_pred HHHHHHHHHhhcccceEEEEeccchhh--HHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC
Confidence 444445567788888999999987543 35777787751 245554 678999999853 344555667777777
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhh
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
...+..|++++.++++-+..|.+-.........+.+ .-|.-+| ||+-=|++-
T Consensus 148 M~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~-edgw~gv-KSsrpn~i~ 199 (213)
T KOG0091|consen 148 MAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKL-EDGWGGV-KSSRPNQIP 199 (213)
T ss_pred ceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceee-eeccccc-cccCCCcCC
Confidence 677788999999999887777655443322223332 2344333 565444443
No 358
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.99 E-value=0.022 Score=54.33 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=35.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC-------ccccCCCCCee--EEEEEEEeeec
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN-------VILFFPASVVW--YWFYCQLLFYF 352 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~-------~~~vs~iPGtT--~~~y~~l~~~~ 352 (355)
...+|++||+|.||||||+-.|.+-+ ..+...|||+- ...-|.|++--
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLP 117 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLP 117 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCc
Confidence 34689999999999999999998632 34556778874 44556666543
No 359
>COG3596 Predicted GTPase [General function prediction only]
Probab=94.97 E-value=0.22 Score=48.12 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=65.6
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh------------hhHHHHHHH----
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA------------WATKGWLRV---- 267 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~------------~~~~~w~~~---- 267 (355)
......+.+.|+|++++|+.|+....+.++.+-+.-..-.+++++|+|-+|..-+ ..++.+.++
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 3455678899999999999999888887776666544345899999999997532 111222111
Q ss_pred Hhhh-CCce-EEEeeecCCCChHHHHHHHHHHHhh
Q 018454 268 LSKE-YPSL-AFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 268 l~~~-~p~~-~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+.+. .++. ++.+|...+||++.|...|.+..+.
T Consensus 189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1111 1222 3345678999999999988877763
No 360
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.96 E-value=0.019 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|+++|.|+|||||+.+.|...
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 361
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=94.87 E-value=0.14 Score=45.35 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=61.2
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecC
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+-.+......|+.|.|..+..+.. +..+.+.+...+...|-+||.||+|+....+. .+-...+........|..|++.
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe 153 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKE 153 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhh
Confidence 334557779999999998876542 23444444445667889999999998654321 1111222233456678889999
Q ss_pred CCChHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQF 297 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~ 297 (355)
..+++..+..|...
T Consensus 154 ~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 154 NENVEAMFHCITKQ 167 (198)
T ss_pred cccchHHHHHHHHH
Confidence 99999998877533
No 362
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.74 E-value=0.12 Score=47.48 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=34.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--------------------cCCCcEEEEEeccCCCCh
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--------------------CKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--------------------~~~k~vILVlNK~DLvp~ 258 (355)
..+..+|++|+|.|..++.+.. .+..|+.+ . ..+.|+|||.||+||.+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~--~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQ--NLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHH--HHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 3567899999999999875432 33333322 1 135799999999999764
No 363
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.73 E-value=0.022 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.++|.|++||||++..|.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999853
No 364
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=0.084 Score=48.97 Aligned_cols=83 Identities=18% Similarity=0.100 Sum_probs=53.8
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHh----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
...+--.|+|.|....... ..+.+||.+ .+++..++||.||+||..... ..+-...+.+......+..||..+
T Consensus 84 YrgAvGAllVYDITr~~Tf--env~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDA 161 (222)
T ss_pred hcccceeEEEEechhHHHH--HHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccc
Confidence 3455678999998655433 266777765 236788999999999965221 112223344434455667899999
Q ss_pred CChHHHHHHH
Q 018454 285 FGKGSLLSVL 294 (355)
Q Consensus 285 ~Gi~~Ll~~L 294 (355)
.+++..+..+
T Consensus 162 tNVe~aF~~~ 171 (222)
T KOG0087|consen 162 TNVEKAFERV 171 (222)
T ss_pred ccHHHHHHHH
Confidence 9998766543
No 365
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.60 E-value=0.054 Score=49.77 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=47.5
Q ss_pred EEEEEecCCCCCCCcchHHHHHHHhhcCC--CcEEEEEeccCCCChhhH--HHHHHHHhhhCC-ceEEEeeecCCCChHH
Q 018454 215 VVVQVLDARDPQGTRCHHLERHLKEHCKH--KHMILLLNKCDLVPAWAT--KGWLRVLSKEYP-SLAFHASINKSFGKGS 289 (355)
Q Consensus 215 vVL~VvDardp~~s~~~~l~~~L~~~~~~--k~vILVlNK~DLvp~~~~--~~w~~~l~~~~p-~~~f~vSa~~~~Gi~~ 289 (355)
+-|+|+|+....... ++-++. +-=++|+||+||+|.-.. +...+...+..| ..++++|+++|.|+++
T Consensus 120 ~~v~VidvteGe~~P--------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 120 LRVVVIDVTEGEDIP--------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred eEEEEEECCCCCCCc--------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence 667888876543211 110011 134899999999985322 334444444445 4567789999999999
Q ss_pred HHHHHHHH
Q 018454 290 LLSVLRQF 297 (355)
Q Consensus 290 Ll~~L~q~ 297 (355)
+++++...
T Consensus 192 ~~~~i~~~ 199 (202)
T COG0378 192 WLRFIEPQ 199 (202)
T ss_pred HHHHHHhh
Confidence 99988754
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.56 E-value=0.031 Score=46.90 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=22.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
+-.++++|.+|+|||||+++|.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCEEEEEccCCCccccceeeecccccc
Confidence 446799999999999999999986533
No 367
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.54 E-value=0.046 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.....|+|+|++|+||||||+.|+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34667899999999999999999864
No 368
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.035 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+=-|.+||.+|+|||||+|.+-+-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345689999999999999999874
No 369
>PRK12735 elongation factor Tu; Reviewed
Probab=94.54 E-value=0.027 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.7
Q ss_pred cccceEEEEeecCCCChhHHHHHhhc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+..++|+++|.+|+|||||+|+|+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHH
Confidence 45679999999999999999999986
No 370
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.36 E-value=0.064 Score=49.82 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 290 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 290 Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.+.|..+.. ...++.-||++|.+|+|||||++.|.+.
T Consensus 19 l~~~~~~~~~--~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 19 LLRRLAALQA--EPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHHHHh--cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444432 2346788999999999999999998864
No 371
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=94.36 E-value=0.1 Score=50.12 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred CCCEEEEEecCCC-CCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH
Q 018454 212 SSDVVVQVLDARD-PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK 262 (355)
Q Consensus 212 ~sDvVL~VvDard-p~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~ 262 (355)
.+|++++++|+.. .+...+..+.+.+. .+.++|+|+||+|++......
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~~ 162 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEELK 162 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHHH
Confidence 5789999998763 44444455555554 368999999999998755433
No 372
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=94.30 E-value=0.073 Score=47.66 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=33.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV 340 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt 340 (355)
+.++|.++|..|+||+||++.|.+...-+++|.-|.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf 50 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGF 50 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccce
Confidence 479999999999999999999999998889998875
No 373
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.28 E-value=0.033 Score=48.24 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.5
Q ss_pred EEEEeecCCCChhHHHHHhhc
Q 018454 308 SVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.|+|||+.|+|||||+..|++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999988865
No 374
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.25 E-value=0.064 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+||||++++|.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456899999999999999999863
No 375
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.25 E-value=0.058 Score=52.45 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=22.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.....|+|+|.||+||||||+.|++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999988764
No 376
>CHL00189 infB translation initiation factor 2; Provisional
Probab=94.24 E-value=0.051 Score=59.20 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=28.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+...|+++|++|+|||||+++|+..... .+..+|.|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiT 278 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGIT 278 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccc
Confidence 35678999999999999999999876543 34456665
No 377
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.21 E-value=0.038 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
++++|.+|+|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 579999999999999999975
No 378
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=94.17 E-value=0.26 Score=49.82 Aligned_cols=85 Identities=18% Similarity=0.079 Sum_probs=55.3
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------C------------
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------Y------------ 272 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------~------------ 272 (355)
...|.+++||-|.|.+.-.-.+=...+.. -..|+|+|++|||++|.+......+.++.. .
T Consensus 225 qk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~ 302 (527)
T COG5258 225 QKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVL 302 (527)
T ss_pred cccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHH
Confidence 56789999998888765433222222222 468999999999999987544333332211 0
Q ss_pred ----------CceEEEeeecCCCChHHHHHHHHHH
Q 018454 273 ----------PSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 273 ----------p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
-+.+|.+|+-++.|++-|.+.+..+
T Consensus 303 aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 303 AAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred hhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 1235778999999998777666543
No 379
>PLN03127 Elongation factor Tu; Provisional
Probab=94.10 E-value=0.1 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=23.1
Q ss_pred cccceEEEEeecCCCChhHHHHHhh
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
.+..++|+++|.+|+|||||+++|.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~ 82 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAIT 82 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHH
Confidence 4678999999999999999999997
No 380
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.10 E-value=0.071 Score=58.53 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.++..|+++|.+|+||||||++|++..+. .+..+|.|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT 324 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGIT 324 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCcee
Confidence 35677899999999999999999876543 44456766
No 381
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.16 Score=51.89 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
..+-+.+|+.+-.+|..|.|+||.-....+-..|.+..+- .+.|++-.+||.|..
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~ 146 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDRE 146 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccc
Confidence 3455678899999999999999988776665555554443 689999999999964
No 382
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.99 E-value=0.042 Score=41.47 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|++.|.|++||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 383
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=93.97 E-value=0.14 Score=53.06 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=54.3
Q ss_pred CEEEEEecCCCCCCCcc---hHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhCCceEEEeeecCCCC
Q 018454 214 DVVVQVLDARDPQGTRC---HHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 214 DvVL~VvDardp~~s~~---~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
..|||+.|...-=|... ..|.+-|+..+.++++|+|+||||+.+.+.. ++..+.+.....+.++..|+....|
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eeg 328 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEG 328 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhc
Confidence 46899999875333211 2344556666789999999999999865432 3455555555567778889999999
Q ss_pred hHHHHH
Q 018454 287 KGSLLS 292 (355)
Q Consensus 287 i~~Ll~ 292 (355)
+-++..
T Consensus 329 Vm~Vrt 334 (620)
T KOG1490|consen 329 VMDVRT 334 (620)
T ss_pred eeeHHH
Confidence 866543
No 384
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.97 E-value=0.06 Score=53.37 Aligned_cols=25 Identities=40% Similarity=0.716 Sum_probs=21.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+....|+|.|.||+|||||++.|..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999998754
No 385
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=0.18 Score=52.98 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCC--------CCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhHHH----HH
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDAR--------DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKG----WL 265 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDar--------dp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~~~----w~ 265 (355)
+.+...+..-+..+|+.|+|+||. +|.+.-.++ ...++. ..-..+|+++||+|++.= +-.++ ..
T Consensus 266 kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~-Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~ 343 (603)
T KOG0458|consen 266 KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRS-LGISQLIVAINKMDLVSWSQDRFEEIKNKLS 343 (603)
T ss_pred cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHH-cCcceEEEEeecccccCccHHHHHHHHHHHH
Confidence 344444556778999999999995 333322222 222322 134679999999999952 11122 22
Q ss_pred HHHhhhC-----CceEEEeeecCCCChH
Q 018454 266 RVLSKEY-----PSLAFHASINKSFGKG 288 (355)
Q Consensus 266 ~~l~~~~-----p~~~f~vSa~~~~Gi~ 288 (355)
.+|.+.. .+..+++|+.+|.|+-
T Consensus 344 ~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 344 SFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred HHHHHhcCcccCCcceEecccccCCccc
Confidence 2332322 1346788999998863
No 386
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.90 E-value=0.51 Score=54.10 Aligned_cols=127 Identities=18% Similarity=0.274 Sum_probs=76.1
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCC--------------------Ch
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLV--------------------PA 258 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLv--------------------p~ 258 (355)
.+..++.++|+.+-+.|.|+.-.-..+..| .++.+++.- +..+..++=|+-++|-. +.
T Consensus 54 ~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~ 133 (1153)
T PLN03210 54 SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTE 133 (1153)
T ss_pred cccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccch
Confidence 455677888999999999987776666666 344444432 12345567788888721 11
Q ss_pred hhHHHHHHHHhhhCCceEEEe---------------------------eecCCCChHHHHHHHHHHHhhhccccceEEEE
Q 018454 259 WATKGWLRVLSKEYPSLAFHA---------------------------SINKSFGKGSLLSVLRQFARLKSDKQAISVGF 311 (355)
Q Consensus 259 ~~~~~w~~~l~~~~p~~~f~v---------------------------Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~ 311 (355)
+...+|.+.+........++. ....-.|+++-++.|..++....+ ..-.|++
T Consensus 134 ~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~-~~~vvgI 212 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESE-EVRMVGI 212 (1153)
T ss_pred hHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccC-ceEEEEE
Confidence 224567666654321111111 011223666656666555543333 3456899
Q ss_pred eecCCCChhHHHHHhhc
Q 018454 312 VGYPNVGKSSVINTLRT 328 (355)
Q Consensus 312 vG~pNVGKSSLIN~Ll~ 328 (355)
+|.+|+|||||..++-.
T Consensus 213 ~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 213 WGSSGIGKTTIARALFS 229 (1153)
T ss_pred EcCCCCchHHHHHHHHH
Confidence 99999999999998854
No 387
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.69 E-value=0.052 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEeecCCCChhHHHHHhhccC
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+|+|||.+++|||||+++|.+..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 57999999999999999999853
No 388
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.68 E-value=0.12 Score=42.28 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+.+++.+..++.. ..+..+.++|.||+|||++++.+...
T Consensus 3 ~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 3 QEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred hHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455555555431 23456899999999999999999864
No 389
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.68 E-value=0.09 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEeecCCCChhHHHHHhhcc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.-++|+|.||+|||||.++|.+.
T Consensus 79 ~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 44699999999999999999863
No 390
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=93.67 E-value=0.11 Score=56.44 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
..++...+..+|.+|+|+|+.+........+.+.+.. .+.|.++|+||+|...
T Consensus 100 ~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 100 GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 3566778899999999999988765555555555433 4678899999999863
No 391
>PLN00023 GTP-binding protein; Provisional
Probab=93.54 E-value=0.14 Score=50.82 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
..++|.+||..+|||||||+.+.....
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 468899999999999999999997653
No 392
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.46 E-value=0.11 Score=50.68 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=25.4
Q ss_pred HHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 294 LRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 294 L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+++.....+.+.-|||+|.+++||||+.+.|.+
T Consensus 50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred HHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33344333335678899999999999999987754
No 393
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=93.44 E-value=0.53 Score=43.05 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=56.3
Q ss_pred hcCCCEEEEEecCCCCCCCcc-hHHH-HHHHhh----cCCCcEEEEEeccCCCC---hhh-HHHHHHHHhhhCCceEEEe
Q 018454 210 IDSSDVVVQVLDARDPQGTRC-HHLE-RHLKEH----CKHKHMILLLNKCDLVP---AWA-TKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~-~~l~-~~L~~~----~~~k~vILVlNK~DLvp---~~~-~~~w~~~l~~~~p~~~f~v 279 (355)
...+|..++|.|..++.+... ..+. ++|... -.+-|+||+.||+|+-. ..+ ..+-+...........|..
T Consensus 79 YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEt 158 (210)
T KOG0394|consen 79 YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFET 158 (210)
T ss_pred ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEe
Confidence 467899999999888765432 1222 223221 13578999999999854 222 1233334444455556888
Q ss_pred eecCCCChHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~ 297 (355)
||+...++.+.+..+...
T Consensus 159 SAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARR 176 (210)
T ss_pred cccccccHHHHHHHHHHH
Confidence 999999999887766543
No 394
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=93.41 E-value=0.077 Score=56.58 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+|| ..+..++-..+..+|.|++|+|+.+...-.-+.+.+..-+ .+.++++|+||+|++
T Consensus 205 PGH-VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGH-VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred CCc-ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 566 3567888889999999999999998775544444443333 479999999999974
No 395
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.066 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEeecCCCChhHHHHHhhccC
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.++++|.+|+|||||++.|.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999753
No 396
>PRK06696 uridine kinase; Validated
Probab=93.15 E-value=0.16 Score=46.87 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
++++.|.+.........+.-|++.|.|++|||||-+.|..
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455554444322234678899999999999999998875
No 397
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.96 E-value=0.063 Score=52.91 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=25.5
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
..|+++|.|++|||||+|.|.+.-...+.+-+|
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~ 195 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA 195 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence 468999999999999999999864444444343
No 398
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.94 E-value=0.084 Score=39.65 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=17.3
Q ss_pred EEEeecCCCChhHHHHHhh
Q 018454 309 VGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll 327 (355)
..|.|.+++|||||+.++.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999875
No 399
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=92.85 E-value=0.1 Score=47.36 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=28.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH----Hh---hcCCCcEEEEEeccCCCChh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL----KE---HCKHKHMILLLNKCDLVPAW 259 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L----~~---~~~~k~vILVlNK~DLvp~~ 259 (355)
.+..+-.||+|||+...... ...+.++| .. .....|++|+.||.|+....
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~-~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKE-LRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred chhhCCEEEEEEeCccchhh-HHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 47889999999999742211 12223333 22 12457899999999997643
No 400
>PRK05439 pantothenate kinase; Provisional
Probab=92.84 E-value=0.14 Score=50.28 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+...+.++++....+.+.-||+.|.|+|||||+.+.|..
T Consensus 68 ~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 68 QRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555566666544456778899999999999999998875
No 401
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.81 E-value=0.076 Score=49.87 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=22.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
++--|+++|.+|+|||||+|.|-+-...
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3445799999999999999999865544
No 402
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=92.79 E-value=0.073 Score=49.03 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.1
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVIL 333 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~ 333 (355)
-=++++|.+|+||||||+.|.+....+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 346899999999999999998765433
No 403
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=0.078 Score=55.41 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.++-+|++||-+|+||||+||+|++
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 404
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.18 Score=54.33 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=34.1
Q ss_pred CCCChHHHHHHHHHHHhhh---ccccceEEEEeecCCCChhHHHHHhhc
Q 018454 283 KSFGKGSLLSVLRQFARLK---SDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~---~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+-+|++.+.+.+-+|+.-. ..-++--+++||.|||||+||-+++-+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH
Confidence 4468888888887776532 223334458999999999999998854
No 405
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.68 E-value=0.1 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEEEeecCCCChhHHHHHhhcc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+.++|.||+||||++..|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 45789999999999999998763
No 406
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.64 E-value=0.11 Score=50.85 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=21.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.....||+-|.|||||||||-.|..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHH
Confidence 3567889999999999999999865
No 407
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.63 E-value=0.13 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
....|.|+|-+|+||||++|+|+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999999986
No 408
>PRK00049 elongation factor Tu; Reviewed
Probab=92.59 E-value=0.093 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=23.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+..++|+++|.+|+|||||+++|+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHH
Confidence 5678999999999999999999986
No 409
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.59 E-value=0.1 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999999853
No 410
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.58 E-value=0.13 Score=47.59 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=22.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
+-.++++|.+|+|||||++.|.+....
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 445799999999999999999986543
No 411
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.55 E-value=0.64 Score=44.65 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=47.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhC------CceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEY------PSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~------p~~~f~vS 280 (355)
.+.+-+|.+++|+-.-- +.....+-.-+.+ ..=|+|+||+|+-..... ......+.-.. ...++.+|
T Consensus 138 ~I~~~aD~~v~v~~Pg~--GD~iQ~~KaGimE----iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 138 DIADMADTVVLVLVPGL--GDEIQAIKAGIME----IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp HHHTTSSEEEEEEESST--CCCCCTB-TTHHH----H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HHHHhcCeEEEEecCCC--ccHHHHHhhhhhh----hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 46788999999884321 1111111111111 234999999995332222 22222222111 13577889
Q ss_pred ecCCCChHHHHHHHHHHHhh
Q 018454 281 INKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+.++.|+++|.+.|.++...
T Consensus 212 A~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877653
No 412
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.53 E-value=0.097 Score=48.45 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457999999999999999999853
No 413
>PLN03126 Elongation factor Tu; Provisional
Probab=92.50 E-value=0.16 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=24.1
Q ss_pred cccceEEEEeecCCCChhHHHHHhhcc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..++|+++|.+|+|||||+++|+..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~ 104 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMA 104 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHh
Confidence 466799999999999999999999963
No 414
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.44 E-value=0.11 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4457999999999999999999854
No 415
>PRK12736 elongation factor Tu; Reviewed
Probab=92.38 E-value=0.1 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.7
Q ss_pred cccceEEEEeecCCCChhHHHHHhhc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+..++|+++|.+++|||||+++|++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~ 34 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITK 34 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHh
Confidence 45679999999999999999999986
No 416
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.36 E-value=0.088 Score=60.66 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-+||+||.+|+|||||+++|.+-
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999873
No 417
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.30 E-value=0.11 Score=47.11 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999854
No 418
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.29 E-value=0.11 Score=47.35 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457999999999999999999853
No 419
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.19 Score=53.67 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFF 335 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs 335 (355)
|..+=+..|.+.+. +....|.|-|..|.||||+||+|+.++++.-+
T Consensus 93 ~~~~~l~~i~~~l~----r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g 138 (749)
T KOG0448|consen 93 GYEDKLDAIDEVLA----RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSG 138 (749)
T ss_pred cHHHHHHHHHHHHh----hcccEEEEeCCCCCcHHHHHHHHHHHhhCccc
Confidence 34444444444332 56788999999999999999999988765543
No 420
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.19 E-value=0.12 Score=47.11 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999998753
No 421
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.17 E-value=0.12 Score=46.16 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457999999999999999999853
No 422
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.17 E-value=0.12 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999854
No 423
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=0.81 Score=44.88 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCC-cEEEEEeccCCCChhhHHH-----HHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHK-HMILLLNKCDLVPAWATKG-----WLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k-~vILVlNK~DLvp~~~~~~-----w~~~l~ 269 (355)
+||. ..++...--..+.|-.|+|+.|.|.+.. .-.+..|....-+. .+++.+||+|++......+ ..+.|+
T Consensus 83 PGHa-DYvKNMItgAaqmDgAILVVsA~dGpmP--qTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 83 PGHA-DYVKNMITGAAQMDGAILVVAATDGPMP--QTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred CChH-HHHHHHhhhHHhcCccEEEEEcCCCCCC--cchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 5653 3444444456788999999999876533 22233333211345 4667799999998443322 222233
Q ss_pred hh-CC---ceEEEeeecCCC--------ChHHHHHHHHHHHhh
Q 018454 270 KE-YP---SLAFHASINKSF--------GKGSLLSVLRQFARL 300 (355)
Q Consensus 270 ~~-~p---~~~f~vSa~~~~--------Gi~~Ll~~L~q~~~~ 300 (355)
.. +| +.++.-|+.... .+.+|++.+-.+.+.
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 22 33 234444544321 246777777777653
No 424
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.10 E-value=0.12 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34457999999999999999999763
No 425
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.10 E-value=0.12 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999999854
No 426
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.10 E-value=0.13 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999998854
No 427
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=92.07 E-value=0.35 Score=45.59 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=33.3
Q ss_pred hhhcCCCEEEEEecCC-CCCCCcchHHHHHH---HhhcCCCcEEEEEeccCCCChhh
Q 018454 208 KVIDSSDVVVQVLDAR-DPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWA 260 (355)
Q Consensus 208 kvi~~sDvVL~VvDar-dp~~s~~~~l~~~L---~~~~~~k~vILVlNK~DLvp~~~ 260 (355)
.+..+++++|+|+|+. ++....-..+...+ ....++..+-+.+.|+|+++...
T Consensus 72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~ 128 (232)
T PF04670_consen 72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE 128 (232)
T ss_dssp HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH
T ss_pred HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH
Confidence 4678899999999998 33221112222222 23457889999999999998654
No 428
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.06 E-value=0.11 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred eEEEEeecCCCChhHHHHHhhcc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
-.|+++|.+|+|||||+|-+-+-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 45799999999999999999874
No 429
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=92.05 E-value=0.29 Score=45.96 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
..++|.+||-+||||||||+.+....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~ 37 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC 37 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC
Confidence 35788999999999999999998754
No 430
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.03 E-value=0.13 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456899999999999999998864
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.03 E-value=0.12 Score=46.52 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34567999999999999999999864
No 432
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=92.03 E-value=0.12 Score=52.11 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.3
Q ss_pred cccceEEEEeecCCCChhHHHHHhhc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.++.++|+++|.+|+|||||+++|++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~ 34 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITT 34 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHh
Confidence 35678999999999999999999984
No 433
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.13 Score=47.15 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999853
No 434
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.93 E-value=0.11 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=19.6
Q ss_pred eEEEEeecCCCChhHHHHHhhccC
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
--.|+||++|+||||||..+-+-.
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le 56 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLE 56 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Confidence 345999999999999998776543
No 435
>PLN00023 GTP-binding protein; Provisional
Probab=91.93 E-value=0.17 Score=50.21 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=33.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc-------------CCCcEEEEEeccCCCCh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-------------KHKHMILLLNKCDLVPA 258 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~-------------~~k~vILVlNK~DLvp~ 258 (355)
.+..+|++|+|+|+.+.... ..+..++. ... .+.|+|||.||+||...
T Consensus 103 yyr~AdgiILVyDITdr~SF--enL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 103 FYSQINGVIFVHDLSQRRTK--TSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hccCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 47889999999999886432 23444433 221 14789999999999754
No 436
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.91 E-value=0.12 Score=53.76 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
+++-.|++||.+|+|||||+|.|.+--.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567789999999999999999998643
No 437
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.90 E-value=0.13 Score=46.79 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999853
No 438
>PLN02772 guanylate kinase
Probab=91.88 E-value=0.11 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred eEEEEeecCCCChhHHHHHhhcc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+.|+|.+|||||||++.|+..
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhh
Confidence 45789999999999999999874
No 439
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.87 E-value=0.13 Score=46.49 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467999999999999999999854
No 440
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.85 E-value=0.13 Score=46.76 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467999999999999999999853
No 441
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.85 E-value=0.14 Score=46.40 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45567999999999999999999864
No 442
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.83 E-value=0.14 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=20.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++++|.+|+|||||+|.|+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445679999999999999999873
No 443
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.82 E-value=0.14 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467999999999999999999864
No 444
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.80 E-value=0.15 Score=46.33 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457999999999999999999854
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.13 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999854
No 446
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.77 E-value=0.14 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999753
No 447
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.77 E-value=0.13 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999854
No 448
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.75 E-value=0.14 Score=46.79 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999854
No 449
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=1.3 Score=39.71 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=55.7
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+--.|+++|.....+. .++..|+.. ...+-.+|+..||+||....+ .+.-...+...+....|..||-+|
T Consensus 89 RDAMGFlLiFDlT~eqSF--LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSF--LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HhhccceEEEeccchHHH--HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 444557888888765443 234445443 123456889999999976543 344445566667777788899999
Q ss_pred CChHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQF 297 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~ 297 (355)
.++++-++.|-.+
T Consensus 167 ~Nv~kave~Lldl 179 (219)
T KOG0081|consen 167 TNVEKAVELLLDL 179 (219)
T ss_pred cCHHHHHHHHHHH
Confidence 9988766655443
No 450
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.72 E-value=0.14 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999853
No 451
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.68 E-value=0.15 Score=47.22 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34457999999999999999998754
No 452
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.67 E-value=0.15 Score=44.81 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999998864
No 453
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=0.15 Score=46.20 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.3
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV 340 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt 340 (355)
..+..+|.++|.-|+||||+++.|......++.|.-|.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGf 51 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGF 51 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccc
Confidence 45678999999999999999999999999999888875
No 454
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.64 E-value=0.15 Score=46.56 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999998863
No 455
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=91.62 E-value=0.7 Score=42.58 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=56.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhH-HHHH------------HHHhhh-C
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT-KGWL------------RVLSKE-Y 272 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-~~w~------------~~l~~~-~ 272 (355)
....+|++|...+..+|.+..+ ..+...+....++.|+|||.+|.||-..... +... ..+.+. +
T Consensus 73 sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig 152 (198)
T KOG0393|consen 73 SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG 152 (198)
T ss_pred CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC
Confidence 4567899999888888765432 2222333444578999999999999743211 1111 112222 1
Q ss_pred CceEEEeeecCCCChHHHHHHHHHH
Q 018454 273 PSLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
....+.+|+.+..|+.+.++.....
T Consensus 153 a~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 153 AVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred cceeeeehhhhhCCcHHHHHHHHHH
Confidence 2345678999999998888765444
No 456
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=91.61 E-value=0.2 Score=47.05 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=22.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
.+-.++++|.+|+|||||++.|.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344679999999999999999998643
No 457
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=91.61 E-value=0.51 Score=46.64 Aligned_cols=76 Identities=26% Similarity=0.150 Sum_probs=45.2
Q ss_pred cCCCEEEEEecCCCCCCCcc---hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454 211 DSSDVVVQVLDARDPQGTRC---HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~---~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi 287 (355)
-.-|-||-|||+........ ..+...|.- -=+||+||+||+...........+....|...+.-......+.
T Consensus 115 ~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~ 189 (323)
T COG0523 115 VRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSYGDVDL 189 (323)
T ss_pred eeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccccCCCH
Confidence 34577999999987654432 223333321 2389999999999776655566666666644333222244444
Q ss_pred HHHH
Q 018454 288 GSLL 291 (355)
Q Consensus 288 ~~Ll 291 (355)
.+++
T Consensus 190 ~~ll 193 (323)
T COG0523 190 AELL 193 (323)
T ss_pred HHhh
Confidence 3333
No 458
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.61 E-value=0.15 Score=46.35 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999853
No 459
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.60 E-value=0.16 Score=45.31 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457999999999999999999864
No 460
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.59 E-value=0.15 Score=48.33 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=24.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFF 335 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs 335 (355)
++-.++++|.+|+|||||++.|.+-..+..+
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 4556799999999999999999986544433
No 461
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.56 E-value=0.16 Score=45.96 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567999999999999999998854
No 462
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.54 E-value=0.16 Score=46.06 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34567999999999999999998853
No 463
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=91.52 E-value=0.34 Score=43.42 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=24.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFP 336 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~ 336 (355)
..++|.+||-+||||||||-.......=...|
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~ 41 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHP 41 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCC
Confidence 35778999999999999998888765433333
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.52 E-value=0.23 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
....|.|+|.+|+||||++|+|++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 4567899999999999999999873
No 465
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.52 E-value=0.15 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||++.|.+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445799999999999999999875
No 466
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=91.52 E-value=0.33 Score=41.88 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=31.4
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchH-HHHHHHhhcCCCcEEEEEecc
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHH-LERHLKEHCKHKHMILLLNKC 253 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~-l~~~L~~~~~~k~vILVlNK~ 253 (355)
.-+.+.+..+|+||+|+|+..+....+.. +.+.+.. .+..+++|+||+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP--DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT--TCSSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC--CCCeEEEEEcCC
Confidence 34555779999999999999876544322 2222222 345699999996
No 467
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.51 E-value=0.15 Score=47.60 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34457999999999999999998753
No 468
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.50 E-value=0.15 Score=47.29 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34457999999999999999998753
No 469
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.50 E-value=0.16 Score=46.25 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34457999999999999999998854
No 470
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.48 E-value=0.16 Score=46.78 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457999999999999999999753
No 471
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.47 E-value=0.16 Score=46.15 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=22.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999864
No 472
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.47 E-value=0.16 Score=46.28 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4457999999999999999999853
No 473
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.42 E-value=2.4 Score=38.05 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=54.8
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhc-CCCcEEEEEeccCCCChhhHH-HHHHH------------H--h
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHC-KHKHMILLLNKCDLVPAWATK-GWLRV------------L--S 269 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~-~~k~vILVlNK~DLvp~~~~~-~w~~~------------l--~ 269 (355)
.....++.+++|+|..+...... ..+...+.... ...++++|.||+||....... ..... . .
T Consensus 73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh
Confidence 45688899999999987443322 23333334332 258999999999998754211 00000 0 0
Q ss_pred h--hCCceEEEeeec--CCCChHHHHHHHHHHH
Q 018454 270 K--EYPSLAFHASIN--KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 270 ~--~~p~~~f~vSa~--~~~Gi~~Ll~~L~q~~ 298 (355)
. ..+. .+.+|+. .+.++.+++..+...+
T Consensus 153 ~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 153 PEVANPA-LLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred hhhcccc-eeEeecccCCCcCHHHHHHHHHHHH
Confidence 0 0223 5677888 8999998877655444
No 474
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.39 E-value=0.16 Score=47.92 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999854
No 475
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=91.36 E-value=0.16 Score=47.74 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999854
No 476
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.36 E-value=0.17 Score=46.64 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999854
No 477
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.32 E-value=0.17 Score=45.60 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999864
No 478
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.32 E-value=0.15 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=23.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
+++-.|++||.+|+|||||+|.|.+-..
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3567789999999999999999998543
No 479
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.30 E-value=0.15 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred eEEEEeecCCCChhHHHHHhhcc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
--|++||.+|+|||||+.+|-+-
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcc
Confidence 34799999999999999999873
No 480
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.29 E-value=0.19 Score=46.13 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3457999999999999999999853
No 481
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.28 E-value=0.16 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457999999999999999999853
No 482
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.23 E-value=0.17 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||++.|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456799999999999999999986
No 483
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.21 E-value=0.17 Score=47.28 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.2
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||++.|.+-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 445799999999999999999874
No 484
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.17 Score=53.26 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=23.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
++-.+++||.+|+|||||+|.|.+-...
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~ 373 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAP 373 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 4456799999999999999999986543
No 485
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.14 E-value=0.17 Score=45.77 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4456899999999999999999853
No 486
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.14 E-value=0.17 Score=46.90 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34567999999999999999999754
No 487
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.12 E-value=0.17 Score=47.22 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||++.|.+-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 445799999999999999999974
No 488
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.08 E-value=0.28 Score=46.39 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
....|.|+|-+|+||||++++|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhh
Confidence 356789999999999999999986
No 489
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=91.07 E-value=0.17 Score=47.53 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34567999999999999999999853
No 490
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.06 E-value=0.19 Score=44.63 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567999999999999999999853
No 491
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.06 E-value=0.18 Score=46.89 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999854
No 492
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.05 E-value=0.16 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEeecCCCChhHHHHHhhccC
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
-.++++|.+|+|||||++.|.+..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 456999999999999999999854
No 493
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=0.24 Score=49.56 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
-..++++||-+|.||||+||+|....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~ 45 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTD 45 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhh
Confidence 45789999999999999999998763
No 494
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.01 E-value=0.18 Score=47.08 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34457999999999999999998753
No 495
>PRK09602 translation-associated GTPase; Reviewed
Probab=91.01 E-value=0.43 Score=48.41 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHH-HHHHHHHHHhh
Q 018454 242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS-LLSVLRQFARL 300 (355)
Q Consensus 242 ~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~-Ll~~L~q~~~~ 300 (355)
..+|+|+|+||+|+..... +...+.+.....++.+||..+.++.. |.+.+.++++.
T Consensus 216 t~KPvI~VlNK~D~~~~~~---~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEE---NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred cCCCEEEEEEchhcccchH---HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 4699999999999874321 12222222233467889999999988 66777666553
No 496
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.01 E-value=0.29 Score=47.70 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..+.++|.+|+|||||+|+|.+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4567899999999999999999863
No 497
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.99 E-value=0.19 Score=45.57 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||++.|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456799999999999999999876
No 498
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.98 E-value=0.19 Score=46.46 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34457999999999999999998753
No 499
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.98 E-value=0.17 Score=42.11 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.4
Q ss_pred ceEEEEeecCCCChhHHHHHhh
Q 018454 306 AISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
+--++++|.+++|||||++.|.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3456999999999999999987
No 500
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=90.96 E-value=0.18 Score=47.68 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34567999999999999999999853
Done!