Query 018454
Match_columns 355
No_of_seqs 353 out of 2167
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 99.9 6.4E-26 2.2E-30 216.0 14.6 143 196-343 7-157 (282)
2 3ec1_A YQEH GTPase; atnos1, at 99.9 1.2E-25 4.2E-30 221.5 11.8 181 136-343 9-204 (369)
3 3h2y_A GTPase family protein; 99.9 1.4E-25 4.9E-30 221.1 9.3 182 135-343 8-203 (368)
4 3cnl_A YLQF, putative uncharac 99.9 2.4E-24 8.2E-29 203.1 5.3 130 196-342 5-135 (262)
5 1mky_A Probable GTP-binding pr 99.8 5.7E-19 1.9E-23 177.1 15.0 151 200-353 69-227 (439)
6 2hjg_A GTP-binding protein ENG 99.8 5.4E-19 1.8E-23 177.1 10.9 149 200-353 70-222 (436)
7 4dcu_A GTP-binding protein ENG 99.7 3.1E-17 1.1E-21 165.3 10.0 147 200-351 90-240 (456)
8 1t9h_A YLOQ, probable GTPase E 99.7 1.3E-17 4.4E-22 160.8 5.6 118 209-338 83-205 (307)
9 2yv5_A YJEQ protein; hydrolase 99.6 8E-16 2.7E-20 147.4 12.9 118 209-339 76-197 (302)
10 2rcn_A Probable GTPase ENGC; Y 99.6 1.3E-15 4.3E-20 149.7 12.2 121 205-338 123-248 (358)
11 1u0l_A Probable GTPase ENGC; p 99.6 2.3E-15 7.9E-20 143.9 13.0 118 209-339 81-202 (301)
12 2e87_A Hypothetical protein PH 99.2 2.9E-13 9.9E-18 132.0 -4.3 129 214-343 59-203 (357)
13 1x3s_A RAS-related protein RAB 99.0 3.7E-10 1.3E-14 98.0 6.9 107 208-321 83-194 (195)
14 4dhe_A Probable GTP-binding pr 98.8 1.7E-08 5.8E-13 89.9 10.5 97 202-300 105-211 (223)
15 3pqc_A Probable GTP-binding pr 98.8 2.1E-08 7.1E-13 86.6 9.5 97 201-299 93-193 (195)
16 3iev_A GTP-binding protein ERA 98.8 1.6E-08 5.6E-13 96.5 9.5 99 200-300 80-182 (308)
17 1svi_A GTP-binding protein YSX 98.8 4E-08 1.4E-12 85.3 10.6 95 202-298 95-193 (195)
18 1mky_A Probable GTP-binding pr 98.6 1.6E-07 5.6E-12 93.7 12.2 128 206-349 257-390 (439)
19 3t5g_A GTP-binding protein RHE 98.6 1.6E-08 5.3E-13 86.9 3.7 101 209-321 74-180 (181)
20 2dyk_A GTP-binding protein; GT 98.6 7.2E-08 2.5E-12 80.6 7.7 91 202-297 69-159 (161)
21 3tkl_A RAS-related protein RAB 98.6 9.5E-08 3.3E-12 82.8 8.4 94 208-301 84-180 (196)
22 4dcu_A GTP-binding protein ENG 98.6 2.3E-07 7.8E-12 93.1 12.1 134 200-348 265-407 (456)
23 1wf3_A GTP-binding protein; GT 98.6 8.7E-08 3E-12 91.4 7.9 97 201-299 75-172 (301)
24 1upt_A ARL1, ADP-ribosylation 98.6 1.6E-07 5.5E-12 79.2 8.3 92 208-299 70-168 (171)
25 4bas_A ADP-ribosylation factor 98.6 2E-07 6.8E-12 80.9 8.9 91 208-300 82-189 (199)
26 3cph_A RAS-related protein SEC 98.5 1.3E-07 4.6E-12 83.1 7.6 93 208-300 88-182 (213)
27 2qtf_A Protein HFLX, GTP-bindi 98.5 2.7E-09 9.2E-14 104.8 -4.1 137 193-349 65-221 (364)
28 4a9a_A Ribosome-interacting GT 98.5 3.1E-08 1E-12 97.8 3.4 46 307-353 73-118 (376)
29 2hjg_A GTP-binding protein ENG 98.5 5.8E-07 2E-11 89.7 12.5 128 206-348 251-387 (436)
30 3t1o_A Gliding protein MGLA; G 98.5 2.5E-07 8.5E-12 79.8 8.6 90 209-299 94-191 (198)
31 3reg_A RHO-like small GTPase; 98.5 1.2E-07 4E-12 82.7 6.3 91 209-299 91-187 (194)
32 1r8s_A ADP-ribosylation factor 98.5 2E-07 6.9E-12 78.2 7.4 89 208-298 63-160 (164)
33 1g16_A RAS-related protein SEC 98.5 1.9E-07 6.6E-12 78.5 7.3 92 209-300 72-165 (170)
34 3sjy_A Translation initiation 98.5 5.2E-07 1.8E-11 89.1 11.2 98 202-300 88-192 (403)
35 2ce2_X GTPase HRAS; signaling 98.5 2.2E-07 7.5E-12 77.4 7.2 90 209-298 71-163 (166)
36 2x77_A ADP-ribosylation factor 98.5 2.3E-07 7.9E-12 80.3 7.4 89 209-299 86-183 (189)
37 3bc1_A RAS-related protein RAB 98.5 2.6E-07 8.9E-12 79.3 7.4 94 206-299 87-184 (195)
38 1ksh_A ARF-like protein 2; sma 98.5 3.7E-07 1.3E-11 78.7 8.3 90 208-299 81-179 (186)
39 1zj6_A ADP-ribosylation factor 98.5 3.6E-07 1.2E-11 79.1 8.2 89 209-299 80-177 (187)
40 3tw8_B RAS-related protein RAB 98.5 2.2E-07 7.6E-12 78.9 6.6 89 209-299 78-170 (181)
41 2lkc_A Translation initiation 98.5 4.7E-07 1.6E-11 77.0 8.6 89 209-300 75-171 (178)
42 1moz_A ARL1, ADP-ribosylation 98.5 7.1E-07 2.4E-11 76.4 9.7 89 209-299 82-179 (183)
43 2q3h_A RAS homolog gene family 98.5 2.2E-07 7.4E-12 81.3 6.5 92 209-300 88-195 (201)
44 3cb4_D GTP-binding protein LEP 98.4 3.1E-07 1.1E-11 95.7 8.5 124 202-328 84-215 (599)
45 2h57_A ADP-ribosylation factor 98.4 3.2E-07 1.1E-11 79.6 7.3 91 208-298 86-185 (190)
46 2qu8_A Putative nucleolar GTP- 98.4 8E-07 2.7E-11 80.0 10.2 91 209-299 105-204 (228)
47 4dsu_A GTPase KRAS, isoform 2B 98.4 3.5E-07 1.2E-11 78.4 7.3 92 209-300 72-166 (189)
48 3bwd_D RAC-like GTP-binding pr 98.4 2.1E-07 7.2E-12 79.5 5.8 90 209-298 76-179 (182)
49 1ek0_A Protein (GTP-binding pr 98.4 2.2E-07 7.4E-12 78.0 5.7 88 208-297 71-166 (170)
50 2g6b_A RAS-related protein RAB 98.4 3.5E-07 1.2E-11 77.9 7.1 94 206-299 77-173 (180)
51 1zd9_A ADP-ribosylation factor 98.4 4.2E-07 1.4E-11 79.0 7.5 89 208-298 86-183 (188)
52 2f7s_A C25KG, RAS-related prot 98.4 6.4E-07 2.2E-11 79.3 8.8 94 204-299 99-198 (217)
53 1z0j_A RAB-22, RAS-related pro 98.4 3.8E-07 1.3E-11 76.7 6.9 91 208-298 74-167 (170)
54 2gj8_A MNME, tRNA modification 98.4 2.1E-07 7.1E-12 80.3 5.3 90 204-299 75-165 (172)
55 2efe_B Small GTP-binding prote 98.4 5.1E-07 1.7E-11 77.0 7.7 91 208-298 80-173 (181)
56 1mh1_A RAC1; GTP-binding, GTPa 98.4 2.1E-07 7E-12 79.7 5.1 91 209-299 73-179 (186)
57 2h17_A ADP-ribosylation factor 98.4 8.8E-07 3E-11 76.3 9.2 87 208-296 84-179 (181)
58 2atx_A Small GTP binding prote 98.4 3.9E-07 1.3E-11 79.2 6.9 90 209-298 86-191 (194)
59 1vg8_A RAS-related protein RAB 98.4 4.5E-07 1.5E-11 79.3 7.4 91 209-299 77-174 (207)
60 1z2a_A RAS-related protein RAB 98.4 3.8E-07 1.3E-11 76.5 6.6 90 209-298 74-165 (168)
61 2b6h_A ADP-ribosylation factor 98.4 4.6E-07 1.6E-11 79.4 7.4 89 208-298 92-189 (192)
62 3clv_A RAB5 protein, putative; 98.4 7.1E-07 2.4E-11 76.8 8.2 89 207-298 111-202 (208)
63 3kkq_A RAS-related protein M-R 98.4 4.6E-07 1.6E-11 77.7 6.9 90 209-298 86-180 (183)
64 2gf9_A RAS-related protein RAB 98.4 5.4E-07 1.9E-11 78.1 7.4 92 208-299 90-184 (189)
65 1r2q_A RAS-related protein RAB 98.4 4.4E-07 1.5E-11 76.1 6.7 89 208-298 74-167 (170)
66 4djt_A GTP-binding nuclear pro 98.4 5.6E-07 1.9E-11 79.8 7.6 92 209-300 81-175 (218)
67 3con_A GTPase NRAS; structural 98.4 5.4E-07 1.8E-11 77.9 7.2 92 208-299 88-182 (190)
68 1wms_A RAB-9, RAB9, RAS-relate 98.4 7.9E-07 2.7E-11 75.5 8.1 92 208-299 75-173 (177)
69 1xzp_A Probable tRNA modificat 98.4 9.2E-07 3.2E-11 89.8 9.8 89 204-298 315-403 (482)
70 1z0f_A RAB14, member RAS oncog 98.4 8.2E-07 2.8E-11 75.2 8.0 92 207-298 82-176 (179)
71 2gf0_A GTP-binding protein DI- 98.4 4.6E-07 1.6E-11 78.6 6.5 91 209-299 76-170 (199)
72 3q3j_B RHO-related GTP-binding 98.4 3E-07 1E-11 82.2 5.4 91 209-299 95-202 (214)
73 3q85_A GTP-binding protein REM 98.4 6.2E-07 2.1E-11 75.6 7.1 88 210-299 73-166 (169)
74 2yc2_C IFT27, small RAB-relate 98.4 5.2E-07 1.8E-11 78.7 6.7 92 206-299 90-191 (208)
75 3q72_A GTP-binding protein RAD 98.4 7.8E-07 2.7E-11 74.7 7.6 89 209-299 69-163 (166)
76 1zbd_A Rabphilin-3A; G protein 98.4 6.5E-07 2.2E-11 78.3 7.3 92 206-299 74-170 (203)
77 2fu5_C RAS-related protein RAB 98.4 6E-07 2E-11 77.0 6.9 90 208-299 76-170 (183)
78 1wb1_A Translation elongation 98.4 1.6E-06 5.3E-11 88.0 11.0 102 196-300 81-189 (482)
79 2bme_A RAB4A, RAS-related prot 98.4 6.5E-07 2.2E-11 76.8 7.0 94 206-299 76-172 (186)
80 1c1y_A RAS-related protein RAP 98.4 8E-07 2.7E-11 74.4 7.4 90 209-298 71-165 (167)
81 2gco_A H9, RHO-related GTP-bin 98.4 6.9E-07 2.4E-11 78.6 7.3 90 209-298 93-198 (201)
82 3llu_A RAS-related GTP-binding 98.4 1.2E-06 4.1E-11 76.7 8.8 88 209-297 92-194 (196)
83 2hxs_A RAB-26, RAS-related pro 98.3 6.4E-07 2.2E-11 76.2 6.7 91 209-299 76-172 (178)
84 2nzj_A GTP-binding protein REM 98.3 8.7E-07 3E-11 74.9 7.6 92 208-299 73-168 (175)
85 2hup_A RAS-related protein RAB 98.3 9.3E-07 3.2E-11 78.0 8.0 92 208-299 97-192 (201)
86 3gee_A MNME, tRNA modification 98.3 2.5E-07 8.5E-12 93.9 4.8 48 304-351 231-278 (476)
87 3dz8_A RAS-related protein RAB 98.3 9.3E-07 3.2E-11 76.9 7.7 94 206-299 89-185 (191)
88 3gee_A MNME, tRNA modification 98.3 1.3E-06 4.4E-11 88.6 9.8 93 204-299 304-397 (476)
89 4gzl_A RAS-related C3 botulinu 98.3 4.1E-07 1.4E-11 80.5 5.5 89 209-297 98-202 (204)
90 1ega_A Protein (GTP-binding pr 98.3 4.7E-07 1.6E-11 86.1 6.0 92 205-299 81-174 (301)
91 2j0v_A RAC-like GTP-binding pr 98.3 4.2E-07 1.4E-11 80.2 5.3 92 209-300 77-180 (212)
92 2a5j_A RAS-related protein RAB 98.3 9.4E-07 3.2E-11 76.8 7.4 91 209-299 90-183 (191)
93 1fzq_A ADP-ribosylation factor 98.3 7.8E-07 2.7E-11 77.0 6.8 89 208-298 79-176 (181)
94 3c5h_A Glucocorticoid receptor 98.3 2E-06 6.7E-11 79.5 9.9 88 210-298 160-253 (255)
95 2j1l_A RHO-related GTP-binding 98.3 7.9E-07 2.7E-11 79.2 7.0 91 209-299 102-208 (214)
96 2il1_A RAB12; G-protein, GDP, 98.3 7.3E-07 2.5E-11 77.8 6.6 92 207-298 93-188 (192)
97 2bcg_Y Protein YP2, GTP-bindin 98.3 1.1E-06 3.7E-11 77.2 7.8 90 209-300 77-171 (206)
98 2fv8_A H6, RHO-related GTP-bin 98.3 8.1E-07 2.8E-11 78.5 6.8 90 209-298 93-198 (207)
99 2fg5_A RAB-22B, RAS-related pr 98.3 9.6E-07 3.3E-11 77.0 7.2 89 208-298 91-184 (192)
100 2a9k_A RAS-related protein RAL 98.3 8.1E-07 2.8E-11 75.8 6.6 91 208-299 85-180 (187)
101 1u8z_A RAS-related protein RAL 98.3 7.2E-07 2.5E-11 74.5 6.1 90 208-298 71-165 (168)
102 1z08_A RAS-related protein RAB 98.3 8.4E-07 2.9E-11 74.7 6.5 88 209-298 75-167 (170)
103 1ky3_A GTP-binding protein YPT 98.3 1.7E-06 5.8E-11 73.5 8.5 92 207-298 76-176 (182)
104 2oil_A CATX-8, RAS-related pro 98.3 1.1E-06 3.7E-11 76.2 7.3 89 208-298 93-186 (193)
105 2y8e_A RAB-protein 6, GH09086P 98.3 1E-06 3.5E-11 74.6 6.9 90 208-298 82-175 (179)
106 2fn4_A P23, RAS-related protei 98.3 8.5E-07 2.9E-11 75.3 6.3 90 209-300 77-172 (181)
107 1z06_A RAS-related protein RAB 98.3 1.1E-06 3.6E-11 76.2 7.0 92 207-298 88-186 (189)
108 1f6b_A SAR1; gtpases, N-termin 98.3 8E-07 2.7E-11 78.3 6.2 86 209-296 89-195 (198)
109 1m2o_B GTP-binding protein SAR 98.3 6.8E-07 2.3E-11 78.1 5.8 86 209-296 87-188 (190)
110 2erx_A GTP-binding protein DI- 98.3 6.3E-07 2.1E-11 75.3 5.3 90 209-298 71-165 (172)
111 1xzp_A Probable tRNA modificat 98.3 1.4E-07 4.8E-12 95.9 1.4 46 305-350 242-287 (482)
112 2p5s_A RAS and EF-hand domain 98.3 7E-07 2.4E-11 78.3 5.6 92 207-298 95-195 (199)
113 3ihw_A Centg3; RAS, centaurin, 98.3 1.2E-06 4.1E-11 76.3 6.8 91 209-299 82-179 (184)
114 2wji_A Ferrous iron transport 98.3 8.2E-07 2.8E-11 75.6 5.4 84 211-298 80-163 (165)
115 1kk1_A EIF2gamma; initiation o 98.2 4.5E-06 1.5E-10 82.4 11.3 103 196-300 91-200 (410)
116 1kao_A RAP2A; GTP-binding prot 98.2 8.3E-07 2.9E-11 74.0 4.8 90 209-298 71-164 (167)
117 3iby_A Ferrous iron transport 98.2 4.6E-07 1.6E-11 84.3 3.2 83 211-297 82-164 (256)
118 2iwr_A Centaurin gamma 1; ANK 98.2 1.7E-06 5.8E-11 73.8 6.5 88 209-298 69-167 (178)
119 3cpj_B GTP-binding protein YPT 98.2 1.4E-06 4.9E-11 77.9 6.3 91 209-301 82-177 (223)
120 2atv_A RERG, RAS-like estrogen 98.2 1.8E-06 6.1E-11 75.3 6.7 92 208-299 94-190 (196)
121 3i8s_A Ferrous iron transport 98.2 3.4E-07 1.2E-11 85.8 2.1 90 206-299 79-168 (274)
122 2bov_A RAla, RAS-related prote 98.2 2E-06 6.9E-11 74.9 6.9 91 208-299 81-176 (206)
123 1s0u_A EIF-2-gamma, translatio 98.2 4.4E-06 1.5E-10 82.5 10.2 103 196-300 89-198 (408)
124 2ew1_A RAS-related protein RAB 98.2 1.9E-06 6.4E-11 76.5 6.6 94 206-299 92-188 (201)
125 3o47_A ADP-ribosylation factor 98.2 3.2E-06 1.1E-10 81.3 8.6 92 207-298 227-325 (329)
126 3gj0_A GTP-binding nuclear pro 98.2 1.1E-06 3.6E-11 78.4 4.7 90 209-299 84-174 (221)
127 2e87_A Hypothetical protein PH 98.2 9.1E-06 3.1E-10 78.8 11.6 90 209-299 243-335 (357)
128 2o52_A RAS-related protein RAB 98.2 3.5E-06 1.2E-10 74.0 7.8 89 208-299 93-187 (200)
129 3qq5_A Small GTP-binding prote 98.2 1.5E-06 5E-11 87.0 5.8 91 204-299 105-195 (423)
130 1m7b_A RND3/RHOE small GTP-bin 98.2 1.1E-06 3.6E-11 76.0 4.1 90 209-298 75-181 (184)
131 3th5_A RAS-related C3 botulinu 97.5 2.5E-07 8.4E-12 81.4 0.0 88 209-296 98-201 (204)
132 3a1s_A Iron(II) transport prot 98.2 2.3E-06 7.9E-11 79.5 6.6 85 211-299 82-166 (258)
133 2cxx_A Probable GTP-binding pr 98.2 1.4E-05 4.7E-10 68.5 11.0 96 203-300 72-184 (190)
134 2fh5_B SR-beta, signal recogni 98.1 4.9E-06 1.7E-10 73.4 8.2 89 209-297 75-213 (214)
135 3cbq_A GTP-binding protein REM 98.1 4.5E-06 1.6E-10 73.4 8.0 89 209-299 93-187 (195)
136 1lnz_A SPO0B-associated GTP-bi 98.1 3.1E-06 1.1E-10 82.3 7.5 97 202-300 226-330 (342)
137 3oes_A GTPase rhebl1; small GT 98.1 1.4E-06 4.7E-11 76.5 4.5 90 209-300 92-187 (201)
138 3lvq_E ARF-GAP with SH3 domain 98.1 2.6E-06 9E-11 85.8 6.9 91 207-299 384-483 (497)
139 1gwn_A RHO-related GTP-binding 98.1 1.4E-06 5E-11 77.4 4.1 90 209-298 96-202 (205)
140 3geh_A MNME, tRNA modification 98.1 2.2E-06 7.6E-11 86.6 5.8 89 204-300 295-384 (462)
141 2wkq_A NPH1-1, RAS-related C3 98.1 2E-06 6.8E-11 80.8 5.1 90 209-298 223-328 (332)
142 3tr5_A RF-3, peptide chain rel 98.1 8.1E-06 2.8E-10 83.8 9.7 52 204-257 97-148 (528)
143 2ywe_A GTP-binding protein LEP 98.1 6.5E-06 2.2E-10 85.7 9.1 94 204-300 88-184 (600)
144 3k53_A Ferrous iron transport 98.1 3.1E-06 1.1E-10 78.6 5.4 89 207-299 76-165 (271)
145 3j2k_7 ERF3, eukaryotic polype 98.1 1.5E-05 5E-10 79.8 10.6 90 201-292 107-217 (439)
146 3geh_A MNME, tRNA modification 98.1 5.5E-07 1.9E-11 91.0 0.0 41 304-344 222-262 (462)
147 3def_A T7I23.11 protein; chlor 98.0 5.7E-06 1.9E-10 76.6 6.9 42 304-345 34-75 (262)
148 4dkx_A RAS-related protein RAB 98.0 8.7E-06 3E-10 73.8 7.4 90 209-298 82-174 (216)
149 3c5c_A RAS-like protein 12; GD 98.0 4.2E-06 1.4E-10 72.8 5.1 88 209-298 88-184 (187)
150 2zej_A Dardarin, leucine-rich 98.0 6.5E-06 2.2E-10 71.2 6.2 90 209-299 76-177 (184)
151 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 2.6E-06 8.8E-11 84.4 3.7 40 304-343 18-57 (392)
152 2c78_A Elongation factor TU-A; 98.0 7.9E-06 2.7E-10 80.5 7.1 96 202-299 88-211 (405)
153 3b1v_A Ferrous iron uptake tra 98.0 4.4E-06 1.5E-10 78.5 4.8 84 211-298 79-162 (272)
154 2wjg_A FEOB, ferrous iron tran 98.0 4.3E-06 1.5E-10 71.9 4.4 86 211-300 84-169 (188)
155 2aka_B Dynamin-1; fusion prote 98.0 1.1E-05 3.7E-10 75.1 7.3 38 305-342 25-67 (299)
156 2g3y_A GTP-binding protein GEM 98.0 1.1E-05 3.6E-10 72.8 6.9 91 209-299 108-202 (211)
157 3p26_A Elongation factor 1 alp 97.9 1.5E-05 5.1E-10 80.5 8.3 87 202-289 124-227 (483)
158 3l0i_B RAS-related protein RAB 97.9 1.1E-06 3.8E-11 76.9 -0.3 88 209-298 102-194 (199)
159 1d2e_A Elongation factor TU (E 97.9 2.7E-05 9.4E-10 76.6 9.6 101 196-299 74-194 (397)
160 1h65_A Chloroplast outer envel 97.9 1.1E-05 3.9E-10 74.8 6.4 38 304-341 37-74 (270)
161 2qtf_A Protein HFLX, GTP-bindi 97.9 2.9E-05 9.9E-10 76.0 9.5 100 201-300 246-354 (364)
162 3p32_A Probable GTPase RV1496/ 97.9 1.3E-05 4.5E-10 77.7 6.9 86 209-300 189-284 (355)
163 1yrb_A ATP(GTP)binding protein 97.9 4E-05 1.4E-09 69.9 9.7 98 203-301 129-258 (262)
164 1g7s_A Translation initiation 97.9 3.5E-05 1.2E-09 80.2 10.4 89 209-299 90-217 (594)
165 3dpu_A RAB family protein; roc 97.9 1.2E-05 4.1E-10 82.1 6.7 88 209-299 118-207 (535)
166 2elf_A Protein translation elo 97.9 4.2E-05 1.4E-09 74.9 10.2 94 202-299 73-179 (370)
167 2qu8_A Putative nucleolar GTP- 97.9 9.8E-06 3.4E-10 72.7 5.1 43 304-347 27-69 (228)
168 3izy_P Translation initiation 97.9 5E-06 1.7E-10 85.6 3.1 113 209-323 72-211 (537)
169 2ohf_A Protein OLA1, GTP-bindi 97.9 5.2E-06 1.8E-10 82.4 3.1 39 304-343 20-58 (396)
170 1zun_B Sulfate adenylate trans 97.9 2.9E-05 9.9E-10 77.3 8.6 85 204-289 119-213 (434)
171 3lxw_A GTPase IMAP family memb 97.8 7.5E-06 2.6E-10 75.4 3.6 38 304-341 19-57 (247)
172 1pui_A ENGB, probable GTP-bind 97.8 5.6E-06 1.9E-10 72.7 2.6 39 304-342 24-63 (210)
173 3pqc_A Probable GTP-binding pr 97.8 1.2E-05 4E-10 69.1 4.6 38 305-342 22-59 (195)
174 2j69_A Bacterial dynamin-like 97.8 1.9E-05 6.6E-10 83.5 7.2 37 304-340 67-103 (695)
175 1svi_A GTP-binding protein YSX 97.8 1.3E-05 4.4E-10 69.2 4.7 38 304-341 21-59 (195)
176 2xtp_A GTPase IMAP family memb 97.8 1.3E-05 4.3E-10 73.5 4.6 40 304-343 20-60 (260)
177 2cjw_A GTP-binding protein GEM 97.8 3.1E-05 1.1E-09 67.7 6.6 90 210-299 78-171 (192)
178 3t5d_A Septin-7; GTP-binding p 97.8 1.7E-05 5.9E-10 73.8 5.0 85 212-299 115-203 (274)
179 1moz_A ARL1, ADP-ribosylation 97.8 3E-05 1E-09 66.1 6.1 38 304-341 16-53 (183)
180 4dhe_A Probable GTP-binding pr 97.8 1.1E-05 3.9E-10 71.4 3.4 40 304-343 27-67 (223)
181 2xtp_A GTPase IMAP family memb 97.8 1.8E-05 6E-10 72.6 4.5 97 202-300 95-208 (260)
182 1jwy_B Dynamin A GTPase domain 97.7 2.9E-05 1E-09 72.9 5.9 96 201-300 156-262 (315)
183 1jwy_B Dynamin A GTPase domain 97.7 4.4E-05 1.5E-09 71.7 6.9 52 289-340 5-63 (315)
184 2x2e_A Dynamin-1; nitration, h 97.7 4.4E-05 1.5E-09 73.8 7.0 56 287-342 9-72 (353)
185 2aka_B Dynamin-1; fusion prote 97.7 2.1E-05 7E-10 73.2 4.3 92 202-298 151-251 (299)
186 2j69_A Bacterial dynamin-like 97.7 6.3E-05 2.1E-09 79.5 8.2 94 204-299 192-324 (695)
187 1pui_A ENGB, probable GTP-bind 97.7 0.00025 8.7E-09 61.9 10.9 91 207-299 103-198 (210)
188 3cph_A RAS-related protein SEC 97.7 3.3E-05 1.1E-09 67.5 5.0 28 304-331 18-45 (213)
189 3zvr_A Dynamin-1; hydrolase, D 97.7 3.9E-05 1.3E-09 82.0 6.3 82 211-296 186-274 (772)
190 1zj6_A ADP-ribosylation factor 97.7 4.3E-05 1.5E-09 65.8 5.5 38 304-341 14-51 (187)
191 2g3y_A GTP-binding protein GEM 97.7 2.3E-05 8E-10 70.5 3.8 27 305-331 36-62 (211)
192 1ksh_A ARF-like protein 2; sma 97.7 4.6E-05 1.6E-09 65.3 5.6 38 304-341 16-53 (186)
193 3r7w_A Gtpase1, GTP-binding pr 97.6 0.00014 4.8E-09 68.9 9.1 85 208-293 76-174 (307)
194 3avx_A Elongation factor TS, e 97.6 0.00016 5.4E-09 80.3 10.6 101 196-299 367-485 (1289)
195 2x77_A ADP-ribosylation factor 97.6 2.7E-05 9.2E-10 67.1 3.6 38 304-341 20-57 (189)
196 1fzq_A ADP-ribosylation factor 97.6 3.6E-05 1.2E-09 66.4 4.4 38 304-341 14-51 (181)
197 3lxx_A GTPase IMAP family memb 97.6 2.8E-05 9.5E-10 70.4 3.8 30 304-333 27-56 (239)
198 1jny_A EF-1-alpha, elongation 97.6 0.00014 4.9E-09 72.4 9.2 85 202-288 97-201 (435)
199 1f5n_A Interferon-induced guan 97.6 6.5E-05 2.2E-09 78.1 6.7 42 304-345 36-81 (592)
200 1m2o_B GTP-binding protein SAR 97.6 5.7E-05 2E-09 65.7 5.4 38 304-341 21-58 (190)
201 3mca_A HBS1, elongation factor 97.6 2.2E-05 7.6E-10 81.6 3.1 89 209-299 275-396 (592)
202 3tkl_A RAS-related protein RAB 97.6 8.5E-05 2.9E-09 63.9 5.8 40 305-345 15-54 (196)
203 2wsm_A Hydrogenase expression/ 97.6 7.5E-05 2.6E-09 66.1 5.7 82 212-299 129-213 (221)
204 2y8e_A RAB-protein 6, GH09086P 97.6 9.2E-05 3.2E-09 62.3 5.9 28 305-332 13-40 (179)
205 2h17_A ADP-ribosylation factor 97.6 4.6E-05 1.6E-09 65.4 4.0 38 304-341 19-56 (181)
206 2fg5_A RAB-22B, RAS-related pr 97.6 7.8E-05 2.7E-09 64.6 5.5 38 304-341 21-59 (192)
207 2www_A Methylmalonic aciduria 97.5 5.7E-05 1.9E-09 73.3 4.9 24 305-328 73-96 (349)
208 2bov_A RAla, RAS-related prote 97.5 7.4E-05 2.5E-09 64.8 5.1 28 304-331 12-39 (206)
209 1r5b_A Eukaryotic peptide chai 97.5 0.0002 6.8E-09 72.1 8.7 85 202-289 134-241 (467)
210 3izq_1 HBS1P, elongation facto 97.5 0.0001 3.6E-09 76.8 6.6 93 196-290 253-362 (611)
211 4bas_A ADP-ribosylation factor 97.5 9.1E-05 3.1E-09 63.9 5.0 39 304-342 15-55 (199)
212 3oes_A GTPase rhebl1; small GT 97.5 0.00012 4.1E-09 63.9 5.7 29 304-332 22-50 (201)
213 2a9k_A RAS-related protein RAL 97.5 0.0001 3.5E-09 62.5 5.1 27 305-331 17-43 (187)
214 3cbq_A GTP-binding protein REM 97.5 4.4E-05 1.5E-09 66.9 2.8 26 304-329 21-46 (195)
215 1lnz_A SPO0B-associated GTP-bi 97.5 3.8E-05 1.3E-09 74.6 2.4 35 308-343 160-194 (342)
216 2dy1_A Elongation factor G; tr 97.5 0.00021 7.1E-09 75.2 8.2 51 204-256 89-139 (665)
217 4gzl_A RAS-related C3 botulinu 97.5 0.00015 5E-09 63.8 6.0 28 304-331 28-55 (204)
218 2www_A Methylmalonic aciduria 97.5 0.00031 1.1E-08 68.0 8.8 85 209-299 184-278 (349)
219 2h5e_A Peptide chain release f 97.4 0.00037 1.3E-08 71.5 9.7 53 204-258 97-149 (529)
220 1dar_A EF-G, elongation factor 97.4 0.0003 1E-08 74.3 9.2 53 204-258 92-144 (691)
221 1zo1_I IF2, translation initia 97.4 5.3E-05 1.8E-09 77.3 3.3 85 209-296 71-163 (501)
222 2qpt_A EH domain-containing pr 97.4 7.9E-05 2.7E-09 76.7 4.7 39 305-343 64-104 (550)
223 3reg_A RHO-like small GTPase; 97.4 0.00014 4.9E-09 62.8 5.6 28 304-331 21-48 (194)
224 1f60_A Elongation factor EEF1A 97.4 7.4E-05 2.5E-09 75.1 4.2 86 201-288 97-200 (458)
225 2ged_A SR-beta, signal recogni 97.4 0.00012 4.1E-09 63.0 5.0 49 283-331 22-73 (193)
226 3gj0_A GTP-binding nuclear pro 97.4 9.1E-05 3.1E-09 65.7 4.2 40 304-343 13-53 (221)
227 2q3h_A RAS homolog gene family 97.4 0.00011 3.8E-09 63.8 4.5 27 304-330 18-44 (201)
228 2p67_A LAO/AO transport system 97.4 0.00036 1.2E-08 67.2 8.6 85 209-299 166-260 (341)
229 3con_A GTPase NRAS; structural 97.4 0.00014 4.9E-09 62.4 5.0 27 305-331 20-46 (190)
230 1f6b_A SAR1; gtpases, N-termin 97.4 8.5E-05 2.9E-09 65.2 3.5 38 304-341 23-60 (198)
231 1z06_A RAS-related protein RAB 97.4 0.00014 4.6E-09 62.7 4.6 37 304-340 18-55 (189)
232 2h57_A ADP-ribosylation factor 97.4 0.00017 5.7E-09 62.2 5.1 38 304-341 19-58 (190)
233 2oil_A CATX-8, RAS-related pro 97.4 0.0002 6.8E-09 61.7 5.5 38 304-341 23-61 (193)
234 2xex_A Elongation factor G; GT 97.4 0.00042 1.5E-08 73.2 9.0 52 205-258 91-142 (693)
235 2yc2_C IFT27, small RAB-relate 97.3 5.3E-05 1.8E-09 65.7 1.7 27 304-330 18-44 (208)
236 1zd9_A ADP-ribosylation factor 97.3 0.00019 6.4E-09 62.0 5.2 38 304-341 20-58 (188)
237 2il1_A RAB12; G-protein, GDP, 97.3 0.00018 6.1E-09 62.4 4.8 37 304-340 24-61 (192)
238 3c5c_A RAS-like protein 12; GD 97.3 0.00021 7.1E-09 61.9 5.2 27 304-330 19-45 (187)
239 3dpu_A RAB family protein; roc 97.3 0.00019 6.3E-09 73.2 5.6 47 284-330 13-65 (535)
240 3kkq_A RAS-related protein M-R 97.3 0.00023 8E-09 60.5 5.4 28 304-331 16-43 (183)
241 3vqt_A RF-3, peptide chain rel 97.3 0.00047 1.6E-08 70.9 8.5 59 196-257 108-166 (548)
242 2rdo_7 EF-G, elongation factor 97.3 0.00077 2.6E-08 71.3 10.3 54 202-257 95-148 (704)
243 1x3s_A RAS-related protein RAB 97.3 0.00028 9.6E-09 60.4 5.8 37 305-341 14-51 (195)
244 3l82_B F-box only protein 4; T 97.3 0.0006 2.1E-08 62.3 8.1 95 201-298 117-221 (227)
245 1udx_A The GTP-binding protein 97.3 0.0011 3.7E-08 66.0 10.6 93 207-301 230-326 (416)
246 2p5s_A RAS and EF-hand domain 97.3 0.00022 7.6E-09 62.1 4.9 38 304-341 26-64 (199)
247 2efe_B Small GTP-binding prote 97.3 0.00018 6.3E-09 60.8 4.3 30 304-333 10-39 (181)
248 2o52_A RAS-related protein RAB 97.3 0.00018 6E-09 63.0 4.1 28 304-331 23-50 (200)
249 1oix_A RAS-related protein RAB 97.3 0.00033 1.1E-08 61.0 5.8 28 305-332 28-55 (191)
250 2ew1_A RAS-related protein RAB 97.3 0.00035 1.2E-08 61.7 6.0 27 305-331 25-51 (201)
251 1z0f_A RAB14, member RAS oncog 97.3 0.00032 1.1E-08 58.9 5.5 38 304-341 13-51 (179)
252 2gf9_A RAS-related protein RAB 97.2 0.00035 1.2E-08 60.0 5.8 37 305-341 21-58 (189)
253 2f9l_A RAB11B, member RAS onco 97.2 0.00074 2.5E-08 58.8 7.6 91 209-299 74-167 (199)
254 3qq5_A Small GTP-binding prote 97.2 7E-05 2.4E-09 74.8 1.0 46 305-350 33-78 (423)
255 2b6h_A ADP-ribosylation factor 97.2 0.00025 8.5E-09 61.7 4.4 37 304-340 27-63 (192)
256 2atv_A RERG, RAS-like estrogen 97.2 0.00036 1.2E-08 60.4 5.4 29 304-332 26-54 (196)
257 2f7s_A C25KG, RAS-related prot 97.2 0.00026 8.7E-09 62.3 4.4 28 304-331 23-50 (217)
258 4djt_A GTP-binding nuclear pro 97.2 0.00026 8.8E-09 62.4 4.4 38 304-341 9-47 (218)
259 3lxx_A GTPase IMAP family memb 97.2 0.001 3.5E-08 60.0 8.3 98 201-299 101-213 (239)
260 3lxw_A GTPase IMAP family memb 97.2 0.00087 3E-08 61.4 8.0 96 204-300 97-208 (247)
261 2j1l_A RHO-related GTP-binding 97.1 0.00037 1.3E-08 61.7 4.8 28 304-331 32-59 (214)
262 3lvq_E ARF-GAP with SH3 domain 97.1 0.00038 1.3E-08 69.9 5.4 38 304-341 320-357 (497)
263 3bc1_A RAS-related protein RAB 97.1 0.00077 2.6E-08 57.3 6.5 28 304-331 9-36 (195)
264 1nrj_B SR-beta, signal recogni 97.1 0.00017 5.8E-09 63.5 2.3 77 210-286 80-170 (218)
265 3zvr_A Dynamin-1; hydrolase, D 97.1 0.00056 1.9E-08 73.1 6.5 60 280-339 19-84 (772)
266 2a5j_A RAS-related protein RAB 97.1 0.00029 1E-08 60.8 3.7 30 304-333 19-48 (191)
267 2wkq_A NPH1-1, RAS-related C3 97.1 0.0014 4.6E-08 61.3 8.3 40 304-345 153-192 (332)
268 3cpj_B GTP-binding protein YPT 97.0 0.00038 1.3E-08 61.9 4.1 29 304-332 11-39 (223)
269 2atx_A Small GTP binding prote 97.0 0.00039 1.3E-08 59.9 3.9 27 304-330 16-42 (194)
270 2qag_A Septin-2, protein NEDD5 97.0 0.00058 2E-08 66.4 5.5 75 213-291 146-224 (361)
271 3dz8_A RAS-related protein RAB 97.0 0.00032 1.1E-08 60.6 3.3 38 304-341 21-59 (191)
272 3l0i_B RAS-related protein RAB 97.0 8.4E-05 2.9E-09 64.8 -0.5 28 304-331 31-58 (199)
273 2wsm_A Hydrogenase expression/ 97.0 0.00045 1.5E-08 61.0 4.2 36 305-340 29-69 (221)
274 2x2e_A Dynamin-1; nitration, h 97.0 0.00032 1.1E-08 67.7 3.4 87 206-296 160-254 (353)
275 2fv8_A H6, RHO-related GTP-bin 97.0 0.00058 2E-08 59.9 4.5 28 305-332 24-51 (207)
276 3l2o_B F-box only protein 4; s 97.0 0.0021 7.2E-08 61.4 8.6 96 200-298 201-306 (312)
277 1cip_A Protein (guanine nucleo 97.0 0.00054 1.8E-08 66.7 4.6 91 208-298 212-342 (353)
278 2hup_A RAS-related protein RAB 96.9 0.00068 2.3E-08 59.3 4.8 28 304-331 27-54 (201)
279 3q3j_B RHO-related GTP-binding 96.9 0.001 3.5E-08 58.9 6.0 29 304-332 25-53 (214)
280 3j25_A Tetracycline resistance 96.9 0.00052 1.8E-08 71.8 4.3 58 196-256 75-132 (638)
281 1wxq_A GTP-binding protein; st 96.9 0.00034 1.2E-08 69.2 2.6 48 243-291 214-261 (397)
282 1gwn_A RHO-related GTP-binding 96.9 0.0013 4.5E-08 58.0 6.1 28 304-331 26-53 (205)
283 1udx_A The GTP-binding protein 96.9 0.00039 1.3E-08 69.3 2.8 34 307-341 158-191 (416)
284 3ihw_A Centg3; RAS, centaurin, 96.9 0.0014 4.7E-08 56.6 6.0 29 304-332 18-46 (184)
285 1oix_A RAS-related protein RAB 96.8 0.002 6.9E-08 55.9 6.8 89 209-297 98-189 (191)
286 1nrj_B SR-beta, signal recogni 96.8 0.00078 2.7E-08 59.2 4.2 28 304-331 10-37 (218)
287 3th5_A RAS-related C3 botulinu 95.8 0.00019 6.6E-09 62.6 0.0 27 304-330 28-54 (204)
288 1zcb_A G alpha I/13; GTP-bindi 96.8 0.0013 4.5E-08 64.2 5.9 91 208-298 220-351 (362)
289 3j2k_7 ERF3, eukaryotic polype 96.8 0.0011 3.8E-08 66.1 5.2 26 304-329 15-40 (439)
290 2hf9_A Probable hydrogenase ni 96.8 0.0025 8.4E-08 56.4 7.0 80 213-298 140-222 (226)
291 2gco_A H9, RHO-related GTP-bin 96.7 0.0014 4.9E-08 57.0 5.1 28 305-332 24-51 (201)
292 3t1o_A Gliding protein MGLA; G 96.7 0.00062 2.1E-08 58.1 2.5 28 304-331 12-39 (198)
293 3r7w_B Gtpase2, GTP-binding pr 96.7 0.0026 8.9E-08 61.5 7.0 86 209-295 69-169 (331)
294 2qm8_A GTPase/ATPase; G protei 96.7 0.0029 1E-07 60.9 7.1 85 209-299 165-260 (337)
295 3mca_A HBS1, elongation factor 96.6 0.00064 2.2E-08 70.6 2.3 27 303-329 174-200 (592)
296 2ged_A SR-beta, signal recogni 96.6 0.0016 5.3E-08 55.9 4.2 61 208-268 114-181 (193)
297 3o47_A ADP-ribosylation factor 96.6 0.0021 7.2E-08 61.5 5.3 33 304-336 163-195 (329)
298 3llu_A RAS-related GTP-binding 96.5 0.0014 4.9E-08 56.8 3.6 26 304-329 18-43 (196)
299 1ko7_A HPR kinase/phosphatase; 96.5 0.0031 1.1E-07 60.6 6.0 82 243-329 79-167 (314)
300 2qpt_A EH domain-containing pr 96.5 0.0025 8.5E-08 65.5 5.7 63 204-268 180-243 (550)
301 4fn5_A EF-G 1, elongation fact 96.5 0.0056 1.9E-07 64.7 8.5 58 196-256 93-150 (709)
302 3izq_1 HBS1P, elongation facto 96.5 0.00074 2.5E-08 70.3 1.6 28 303-330 164-191 (611)
303 2hf9_A Probable hydrogenase ni 96.5 0.0017 5.8E-08 57.4 3.8 25 305-329 37-61 (226)
304 2qag_A Septin-2, protein NEDD5 96.5 0.0019 6.6E-08 62.7 4.4 31 305-335 36-66 (361)
305 3t34_A Dynamin-related protein 96.4 0.0023 7.7E-08 61.7 4.8 27 308-334 36-62 (360)
306 3c5h_A Glucocorticoid receptor 96.4 0.0019 6.6E-08 59.2 4.1 26 304-329 17-51 (255)
307 3t34_A Dynamin-related protein 96.4 0.0012 4E-08 63.8 2.6 88 201-291 161-252 (360)
308 3c8u_A Fructokinase; YP_612366 96.4 0.003 1E-07 55.9 5.1 42 287-329 4-45 (208)
309 2qnr_A Septin-2, protein NEDD5 96.4 0.0067 2.3E-07 57.3 7.5 99 210-316 124-225 (301)
310 3ney_A 55 kDa erythrocyte memb 96.3 0.0016 5.3E-08 58.5 2.7 26 305-330 18-43 (197)
311 2xtz_A Guanine nucleotide-bind 96.3 0.0035 1.2E-07 61.0 5.4 91 208-298 202-343 (354)
312 1zun_B Sulfate adenylate trans 96.3 0.0013 4.3E-08 65.4 2.2 28 303-330 21-48 (434)
313 3p26_A Elongation factor 1 alp 96.3 0.0012 4.2E-08 66.4 2.0 26 304-329 31-56 (483)
314 2p67_A LAO/AO transport system 96.3 0.0021 7.1E-08 61.8 3.4 38 304-341 54-97 (341)
315 2qag_C Septin-7; cell cycle, c 96.3 0.0036 1.2E-07 62.3 5.1 85 212-299 138-226 (418)
316 1tq4_A IIGP1, interferon-induc 96.2 0.005 1.7E-07 61.2 6.0 25 305-329 68-92 (413)
317 2qm8_A GTPase/ATPase; G protei 96.1 0.0021 7.2E-08 61.9 2.7 25 304-328 53-77 (337)
318 3q5d_A Atlastin-1; G protein, 96.1 0.0034 1.2E-07 63.1 4.1 25 305-329 66-90 (447)
319 4dkx_A RAS-related protein RAB 96.0 0.0052 1.8E-07 55.3 4.7 26 305-330 12-37 (216)
320 4fid_A G protein alpha subunit 96.0 0.01 3.5E-07 57.5 6.8 56 202-257 174-242 (340)
321 3p32_A Probable GTPase RV1496/ 96.0 0.0065 2.2E-07 58.6 5.4 38 304-341 77-120 (355)
322 2qag_B Septin-6, protein NEDD5 96.0 0.0076 2.6E-07 60.2 5.8 23 308-330 44-66 (427)
323 1azs_C GS-alpha; complex (lyas 95.9 0.0087 3E-07 59.3 6.0 91 208-298 236-383 (402)
324 2qnr_A Septin-2, protein NEDD5 95.8 0.0041 1.4E-07 58.8 3.1 25 305-329 17-41 (301)
325 2qag_C Septin-7; cell cycle, c 95.8 0.0074 2.5E-07 60.0 4.8 27 305-331 30-56 (418)
326 1wb1_A Translation elongation 95.7 0.0047 1.6E-07 62.4 3.2 39 305-343 18-62 (482)
327 3ohm_A Guanine nucleotide-bind 95.7 0.012 4.1E-07 56.7 5.9 92 207-298 185-316 (327)
328 1n0u_A EF-2, elongation factor 95.7 0.0078 2.7E-07 64.9 5.0 50 205-256 114-163 (842)
329 1h65_A Chloroplast outer envel 95.4 0.031 1.1E-06 51.3 7.2 49 211-259 118-170 (270)
330 3ec2_A DNA replication protein 95.3 0.016 5.4E-07 49.6 4.7 43 287-329 19-61 (180)
331 1rz3_A Hypothetical protein rb 95.2 0.024 8.1E-07 49.8 5.7 40 289-328 5-44 (201)
332 2c78_A Elongation factor TU-A; 95.0 0.011 3.6E-07 58.0 3.0 25 304-328 9-33 (405)
333 1yrb_A ATP(GTP)binding protein 94.9 0.017 5.7E-07 52.2 3.8 37 304-340 12-53 (262)
334 2j37_W Signal recognition part 94.6 0.027 9.4E-07 57.3 4.7 32 305-336 100-137 (504)
335 1odf_A YGR205W, hypothetical 3 94.4 0.044 1.5E-06 51.5 5.6 26 304-329 29-54 (290)
336 2qor_A Guanylate kinase; phosp 94.4 0.019 6.4E-07 50.4 2.7 25 305-329 11-35 (204)
337 1n0u_A EF-2, elongation factor 94.3 0.024 8.1E-07 61.2 3.9 36 305-340 18-53 (842)
338 1znw_A Guanylate kinase, GMP k 94.3 0.023 7.8E-07 50.0 3.0 25 305-329 19-43 (207)
339 1z6g_A Guanylate kinase; struc 94.3 0.02 6.9E-07 51.1 2.7 25 306-330 23-47 (218)
340 3tr5_A RF-3, peptide chain rel 94.2 0.021 7.2E-07 58.4 3.1 23 305-327 12-34 (528)
341 1sq5_A Pantothenate kinase; P- 94.2 0.044 1.5E-06 51.6 5.1 26 304-329 78-103 (308)
342 1s96_A Guanylate kinase, GMP k 93.9 0.028 9.7E-07 50.7 3.0 26 305-330 15-40 (219)
343 3tqc_A Pantothenate kinase; bi 93.9 0.053 1.8E-06 52.0 5.0 41 289-329 75-115 (321)
344 1r5b_A Eukaryotic peptide chai 93.7 0.022 7.7E-07 57.0 2.1 25 304-328 41-65 (467)
345 4eun_A Thermoresistant glucoki 93.7 0.035 1.2E-06 48.5 3.0 25 305-329 28-52 (200)
346 2dby_A GTP-binding protein; GD 93.6 0.22 7.6E-06 48.5 9.0 21 204-224 91-111 (368)
347 2elf_A Protein translation elo 93.5 0.029 9.8E-07 54.7 2.5 20 308-327 23-42 (370)
348 4gp7_A Metallophosphoesterase; 93.4 0.041 1.4E-06 47.0 3.0 21 306-326 9-29 (171)
349 2h5e_A Peptide chain release f 93.4 0.038 1.3E-06 56.5 3.1 25 305-329 12-36 (529)
350 3uie_A Adenylyl-sulfate kinase 93.2 0.048 1.6E-06 47.6 3.2 25 305-329 24-48 (200)
351 2v9p_A Replication protein E1; 93.2 0.043 1.5E-06 52.2 3.0 26 304-329 124-149 (305)
352 3lnc_A Guanylate kinase, GMP k 93.2 0.035 1.2E-06 49.5 2.2 25 305-329 26-51 (231)
353 1mv5_A LMRA, multidrug resista 93.1 0.06 2E-06 49.1 3.8 26 305-330 27-52 (243)
354 1jbk_A CLPB protein; beta barr 93.1 0.095 3.2E-06 43.7 4.7 41 286-329 26-66 (195)
355 3def_A T7I23.11 protein; chlor 93.1 0.13 4.5E-06 46.9 6.1 48 211-258 115-166 (262)
356 3tif_A Uncharacterized ABC tra 93.0 0.046 1.6E-06 49.7 2.8 25 306-330 31-55 (235)
357 2pcj_A ABC transporter, lipopr 92.9 0.047 1.6E-06 49.2 2.7 25 306-330 30-54 (224)
358 3t61_A Gluconokinase; PSI-biol 92.9 0.046 1.6E-06 47.5 2.6 24 306-329 18-41 (202)
359 2qt1_A Nicotinamide riboside k 92.8 0.065 2.2E-06 46.7 3.4 25 305-329 20-44 (207)
360 2bbw_A Adenylate kinase 4, AK4 92.8 0.055 1.9E-06 48.8 3.0 22 306-327 27-48 (246)
361 2cbz_A Multidrug resistance-as 92.8 0.059 2E-06 49.0 3.2 25 306-330 31-55 (237)
362 3aez_A Pantothenate kinase; tr 92.7 0.058 2E-06 51.3 3.2 26 304-329 88-113 (312)
363 2eyu_A Twitching motility prot 92.6 0.064 2.2E-06 49.6 3.2 25 305-329 24-48 (261)
364 3b85_A Phosphate starvation-in 92.5 0.047 1.6E-06 48.8 2.1 31 306-337 22-52 (208)
365 2onk_A Molybdate/tungstate ABC 92.4 0.052 1.8E-06 49.6 2.3 24 307-330 25-48 (240)
366 2yvu_A Probable adenylyl-sulfa 92.3 0.077 2.6E-06 45.4 3.2 25 304-328 11-35 (186)
367 4g1u_C Hemin import ATP-bindin 92.3 0.066 2.3E-06 49.7 2.9 25 306-330 37-61 (266)
368 1g6h_A High-affinity branched- 92.3 0.061 2.1E-06 49.5 2.7 26 305-330 32-57 (257)
369 2ff7_A Alpha-hemolysin translo 92.3 0.062 2.1E-06 49.2 2.7 25 306-330 35-59 (247)
370 2jeo_A Uridine-cytidine kinase 92.2 0.077 2.6E-06 47.9 3.2 25 305-329 24-48 (245)
371 2ghi_A Transport protein; mult 92.2 0.075 2.6E-06 49.1 3.2 26 305-330 45-70 (260)
372 1sgw_A Putative ABC transporte 92.2 0.057 1.9E-06 48.6 2.3 25 306-330 35-59 (214)
373 1b0u_A Histidine permease; ABC 92.2 0.067 2.3E-06 49.4 2.8 25 306-330 32-56 (262)
374 1gvn_B Zeta; postsegregational 92.2 0.2 6.7E-06 46.8 6.0 26 304-329 31-56 (287)
375 3vaa_A Shikimate kinase, SK; s 92.1 0.079 2.7E-06 46.1 3.0 24 306-329 25-48 (199)
376 2pze_A Cystic fibrosis transme 92.1 0.068 2.3E-06 48.3 2.7 25 306-330 34-58 (229)
377 2cdn_A Adenylate kinase; phosp 92.0 0.092 3.1E-06 45.5 3.3 25 304-328 18-42 (201)
378 3gfo_A Cobalt import ATP-bindi 92.0 0.078 2.7E-06 49.6 3.0 25 306-330 34-58 (275)
379 3e70_C DPA, signal recognition 92.0 0.13 4.5E-06 49.3 4.6 26 304-329 127-152 (328)
380 2d2e_A SUFC protein; ABC-ATPas 92.0 0.081 2.8E-06 48.4 3.1 24 306-329 29-52 (250)
381 2olj_A Amino acid ABC transpor 91.9 0.074 2.5E-06 49.3 2.8 25 306-330 50-74 (263)
382 2ixe_A Antigen peptide transpo 91.9 0.085 2.9E-06 49.0 3.2 25 306-330 45-69 (271)
383 2qi9_C Vitamin B12 import ATP- 91.9 0.083 2.8E-06 48.6 3.0 25 306-330 26-50 (249)
384 2zu0_C Probable ATP-dependent 91.9 0.088 3E-06 48.8 3.2 24 306-329 46-69 (267)
385 1lw7_A Transcriptional regulat 91.9 0.071 2.4E-06 51.3 2.6 29 306-334 170-198 (365)
386 1ji0_A ABC transporter; ATP bi 91.8 0.076 2.6E-06 48.3 2.7 25 306-330 32-56 (240)
387 1vpl_A ABC transporter, ATP-bi 91.8 0.08 2.7E-06 48.9 2.8 25 306-330 41-65 (256)
388 4a74_A DNA repair and recombin 91.7 0.096 3.3E-06 45.8 3.2 25 305-329 24-48 (231)
389 3syl_A Protein CBBX; photosynt 91.7 0.18 6.1E-06 46.4 5.2 25 304-328 65-89 (309)
390 3nh6_A ATP-binding cassette SU 91.7 0.056 1.9E-06 51.4 1.7 26 305-330 79-104 (306)
391 2yz2_A Putative ABC transporte 91.7 0.093 3.2E-06 48.5 3.2 25 306-330 33-57 (266)
392 2x8a_A Nuclear valosin-contain 91.7 0.13 4.6E-06 47.6 4.2 21 309-329 47-67 (274)
393 1htw_A HI0065; nucleotide-bind 91.7 0.1 3.5E-06 44.6 3.2 26 305-330 32-57 (158)
394 1ixz_A ATP-dependent metallopr 91.7 0.16 5.4E-06 45.7 4.6 21 309-329 52-72 (254)
395 3b9q_A Chloroplast SRP recepto 91.6 0.17 5.7E-06 47.8 4.9 25 305-329 99-123 (302)
396 4a9a_A Ribosome-interacting GT 91.6 0.071 2.4E-06 52.2 2.3 54 201-255 138-194 (376)
397 2w58_A DNAI, primosome compone 91.6 0.19 6.4E-06 43.4 4.8 42 287-328 34-76 (202)
398 2nq2_C Hypothetical ABC transp 91.4 0.088 3E-06 48.4 2.6 25 306-330 31-55 (253)
399 2ihy_A ABC transporter, ATP-bi 91.4 0.088 3E-06 49.2 2.7 25 306-330 47-71 (279)
400 2p5t_B PEZT; postsegregational 91.4 0.21 7.3E-06 45.3 5.2 26 304-329 30-55 (253)
401 1dar_A EF-G, elongation factor 91.4 0.093 3.2E-06 55.2 3.1 24 305-328 11-34 (691)
402 2kjq_A DNAA-related protein; s 91.3 0.099 3.4E-06 44.0 2.7 24 306-329 36-59 (149)
403 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.097 3.3E-06 50.0 2.9 24 306-329 171-194 (330)
404 2gza_A Type IV secretion syste 91.3 0.089 3E-06 50.9 2.6 25 305-329 174-198 (361)
405 2vp4_A Deoxynucleoside kinase; 91.3 0.11 3.7E-06 46.5 3.1 26 304-329 18-43 (230)
406 3avx_A Elongation factor TS, e 91.2 0.17 5.8E-06 56.5 5.0 26 304-329 294-319 (1289)
407 2qag_B Septin-6, protein NEDD5 91.2 0.16 5.5E-06 50.6 4.5 53 215-270 151-203 (427)
408 2ehv_A Hypothetical protein PH 91.2 0.11 3.8E-06 46.0 3.0 23 305-327 29-51 (251)
409 3iij_A Coilin-interacting nucl 91.2 0.1 3.5E-06 44.3 2.7 23 306-328 11-33 (180)
410 3tui_C Methionine import ATP-b 91.1 0.1 3.5E-06 51.0 2.8 25 306-330 54-78 (366)
411 4e22_A Cytidylate kinase; P-lo 91.0 0.12 4E-06 47.1 3.1 23 305-327 26-48 (252)
412 3szr_A Interferon-induced GTP- 90.9 0.074 2.5E-06 55.1 1.8 22 309-330 48-69 (608)
413 2ewv_A Twitching motility prot 90.9 0.12 4.1E-06 50.2 3.2 24 305-328 135-158 (372)
414 2p65_A Hypothetical protein PF 90.9 0.19 6.6E-06 41.8 4.1 41 286-329 26-66 (187)
415 2bwj_A Adenylate kinase 5; pho 90.9 0.13 4.4E-06 44.0 3.0 24 306-329 12-35 (199)
416 2pjz_A Hypothetical protein ST 90.8 0.11 3.7E-06 48.2 2.7 24 307-330 31-54 (263)
417 2v3c_C SRP54, signal recogniti 90.8 0.18 6.2E-06 50.1 4.4 23 306-328 99-121 (432)
418 2chg_A Replication factor C sm 90.7 0.27 9.2E-06 41.8 4.9 40 286-328 21-60 (226)
419 1iy2_A ATP-dependent metallopr 90.7 0.22 7.6E-06 45.6 4.6 21 309-329 76-96 (278)
420 1lv7_A FTSH; alpha/beta domain 90.6 0.22 7.4E-06 44.9 4.4 24 306-329 45-68 (257)
421 2yhs_A FTSY, cell division pro 90.5 0.28 9.5E-06 49.9 5.5 26 304-329 291-316 (503)
422 2bbs_A Cystic fibrosis transme 90.5 0.12 4.3E-06 48.5 2.8 25 306-330 64-88 (290)
423 1ukz_A Uridylate kinase; trans 90.4 0.16 5.3E-06 44.0 3.2 25 304-328 13-37 (203)
424 1rj9_A FTSY, signal recognitio 90.4 0.15 5.1E-06 48.3 3.2 24 305-328 101-124 (304)
425 2j37_W Signal recognition part 90.4 0.11 3.8E-06 52.8 2.5 90 201-297 200-310 (504)
426 3h4m_A Proteasome-activating n 90.3 0.28 9.6E-06 44.6 5.0 44 286-329 21-74 (285)
427 1m7g_A Adenylylsulfate kinase; 90.3 0.16 5.5E-06 44.5 3.2 24 305-328 24-47 (211)
428 3jvv_A Twitching mobility prot 90.2 0.15 5.2E-06 49.4 3.2 23 306-328 123-145 (356)
429 2qz4_A Paraplegin; AAA+, SPG7, 90.2 0.3 1E-05 43.5 5.0 25 305-329 38-62 (262)
430 2oap_1 GSPE-2, type II secreti 90.1 0.26 8.9E-06 50.1 5.0 24 306-329 260-283 (511)
431 4ido_A Atlastin-1; GTPase, GTP 90.1 0.22 7.4E-06 50.1 4.3 23 305-327 66-88 (457)
432 3cf0_A Transitional endoplasmi 90.1 0.32 1.1E-05 45.2 5.2 44 286-329 19-72 (301)
433 3bos_A Putative DNA replicatio 90.0 0.32 1.1E-05 42.3 4.9 39 288-329 37-75 (242)
434 1njg_A DNA polymerase III subu 89.9 0.33 1.1E-05 41.6 4.9 43 285-329 26-68 (250)
435 2og2_A Putative signal recogni 89.8 0.3 1E-05 47.4 4.9 25 305-329 156-180 (359)
436 1in4_A RUVB, holliday junction 89.7 0.19 6.5E-06 47.6 3.4 45 286-330 29-75 (334)
437 3tlx_A Adenylate kinase 2; str 89.6 0.2 6.7E-06 45.4 3.2 25 304-328 27-51 (243)
438 1zuh_A Shikimate kinase; alpha 89.0 0.2 7E-06 41.9 2.8 21 308-328 9-29 (168)
439 1fnn_A CDC6P, cell division co 89.0 0.29 1E-05 46.1 4.2 44 286-329 21-67 (389)
440 3fvq_A Fe(3+) IONS import ATP- 89.0 0.17 5.7E-06 49.3 2.4 25 306-330 30-54 (359)
441 1tue_A Replication protein E1; 88.9 0.42 1.4E-05 43.2 4.8 42 285-328 39-80 (212)
442 3co5_A Putative two-component 88.9 0.39 1.3E-05 39.5 4.4 37 288-329 14-50 (143)
443 2w0m_A SSO2452; RECA, SSPF, un 88.9 0.23 7.7E-06 43.2 3.0 24 305-328 22-45 (235)
444 1z47_A CYSA, putative ABC-tran 88.9 0.17 5.7E-06 49.2 2.3 25 306-330 41-65 (355)
445 1ak2_A Adenylate kinase isoenz 88.8 0.23 8E-06 44.2 3.1 24 305-328 15-38 (233)
446 3n70_A Transport activator; si 88.6 0.42 1.4E-05 39.4 4.4 25 305-329 23-47 (145)
447 1p9r_A General secretion pathw 88.6 0.23 7.9E-06 49.2 3.2 24 305-328 166-189 (418)
448 3nwj_A ATSK2; P loop, shikimat 88.6 0.21 7E-06 46.0 2.6 23 306-328 48-70 (250)
449 4eaq_A DTMP kinase, thymidylat 88.6 0.25 8.7E-06 44.4 3.2 25 305-329 25-49 (229)
450 2qby_A CDC6 homolog 1, cell di 88.5 0.34 1.2E-05 45.3 4.2 45 285-329 23-68 (386)
451 1g29_1 MALK, maltose transport 88.5 0.18 6.2E-06 49.2 2.3 25 306-330 29-53 (372)
452 3kta_A Chromosome segregation 88.4 0.24 8.2E-06 42.0 2.7 21 308-328 28-48 (182)
453 2f6r_A COA synthase, bifunctio 88.3 0.27 9.2E-06 45.6 3.3 24 305-328 74-97 (281)
454 1cr0_A DNA primase/helicase; R 88.3 0.26 9E-06 45.4 3.2 25 305-329 34-58 (296)
455 3dm5_A SRP54, signal recogniti 88.2 0.51 1.7E-05 47.2 5.4 23 305-327 99-121 (443)
456 2qgz_A Helicase loader, putati 88.2 0.5 1.7E-05 44.4 5.2 41 288-328 134-174 (308)
457 3b5x_A Lipid A export ATP-bind 88.2 0.24 8.2E-06 50.8 3.1 26 305-330 368-393 (582)
458 3b9p_A CG5977-PA, isoform A; A 88.1 0.5 1.7E-05 43.3 4.9 44 286-329 25-77 (297)
459 3b60_A Lipid A export ATP-bind 88.1 0.23 7.7E-06 51.0 2.8 26 305-330 368-393 (582)
460 2yyz_A Sugar ABC transporter, 88.0 0.24 8.2E-06 48.1 2.8 25 306-330 29-53 (359)
461 1bif_A 6-phosphofructo-2-kinas 88.0 0.26 8.8E-06 49.1 3.1 25 305-329 38-62 (469)
462 4f4c_A Multidrug resistance pr 88.0 0.2 7E-06 56.4 2.6 26 304-329 1103-1128(1321)
463 2px0_A Flagellar biosynthesis 88.0 0.35 1.2E-05 45.5 3.8 24 305-328 104-127 (296)
464 1n0w_A DNA repair protein RAD5 88.0 0.19 6.6E-06 44.2 2.0 40 285-329 8-47 (243)
465 2obl_A ESCN; ATPase, hydrolase 88.0 0.26 9E-06 47.5 3.0 26 305-330 70-95 (347)
466 3sop_A Neuronal-specific septi 87.9 0.74 2.5E-05 42.5 6.0 57 209-268 108-165 (270)
467 3gd7_A Fusion complex of cysti 87.8 0.25 8.4E-06 48.6 2.8 26 305-330 46-71 (390)
468 2yl4_A ATP-binding cassette SU 87.7 0.23 7.9E-06 51.1 2.6 26 305-330 369-394 (595)
469 2ga8_A Hypothetical 39.9 kDa p 87.7 0.68 2.3E-05 45.0 5.7 43 287-329 4-47 (359)
470 3te6_A Regulatory protein SIR3 87.6 0.37 1.3E-05 46.0 3.8 38 289-329 31-68 (318)
471 2it1_A 362AA long hypothetical 87.6 0.26 9E-06 47.9 2.8 25 306-330 29-53 (362)
472 3rlf_A Maltose/maltodextrin im 87.5 0.27 9.1E-06 48.2 2.8 25 306-330 29-53 (381)
473 3qf4_B Uncharacterized ABC tra 87.5 0.25 8.4E-06 51.0 2.7 26 305-330 380-405 (598)
474 4a82_A Cystic fibrosis transme 87.5 0.21 7E-06 51.3 2.1 26 305-330 366-391 (578)
475 1v43_A Sugar-binding transport 87.5 0.27 9.2E-06 48.0 2.8 24 306-329 37-60 (372)
476 1ofh_A ATP-dependent HSL prote 87.4 0.47 1.6E-05 43.2 4.3 25 305-329 49-73 (310)
477 3ozx_A RNAse L inhibitor; ATP 87.4 0.39 1.3E-05 49.0 4.1 31 304-334 23-53 (538)
478 1q3t_A Cytidylate kinase; nucl 87.3 0.33 1.1E-05 43.3 3.2 25 304-328 14-38 (236)
479 2npi_A Protein CLP1; CLP1-PCF1 87.1 0.27 9.4E-06 49.2 2.7 25 305-329 137-161 (460)
480 2grj_A Dephospho-COA kinase; T 87.0 0.33 1.1E-05 42.6 2.9 25 305-329 11-35 (192)
481 3t15_A Ribulose bisphosphate c 87.0 0.34 1.2E-05 45.1 3.1 26 304-329 34-59 (293)
482 1uj2_A Uridine-cytidine kinase 87.0 0.35 1.2E-05 43.7 3.1 26 304-329 20-45 (252)
483 1d2n_A N-ethylmaleimide-sensit 86.9 0.75 2.6E-05 41.7 5.3 27 303-329 61-87 (272)
484 2cvh_A DNA repair and recombin 86.9 0.36 1.2E-05 41.8 3.0 24 305-328 19-42 (220)
485 2qby_B CDC6 homolog 3, cell di 86.8 0.75 2.6E-05 43.3 5.5 44 286-329 24-68 (384)
486 3qf4_A ABC transporter, ATP-bi 86.8 0.26 8.9E-06 50.7 2.4 26 305-330 368-393 (587)
487 1p5z_B DCK, deoxycytidine kina 86.8 0.32 1.1E-05 44.2 2.7 26 304-329 22-47 (263)
488 1sxj_E Activator 1 40 kDa subu 86.8 0.36 1.2E-05 45.2 3.2 41 286-329 18-59 (354)
489 3euj_A Chromosome partition pr 86.6 0.28 9.7E-06 49.6 2.5 22 307-328 30-51 (483)
490 3j16_B RLI1P; ribosome recycli 86.6 0.43 1.5E-05 49.5 3.9 31 305-335 102-132 (608)
491 1svm_A Large T antigen; AAA+ f 86.5 0.36 1.2E-05 47.2 3.1 24 305-328 168-191 (377)
492 3d31_A Sulfate/molybdate ABC t 86.4 0.24 8.1E-06 47.9 1.7 25 306-330 26-50 (348)
493 3cr8_A Sulfate adenylyltranfer 86.3 0.27 9.4E-06 50.4 2.3 25 305-329 368-392 (552)
494 1vma_A Cell division protein F 86.3 0.67 2.3E-05 43.8 4.8 24 305-328 103-126 (306)
495 2dpy_A FLII, flagellum-specifi 86.3 0.38 1.3E-05 47.8 3.2 26 305-330 156-181 (438)
496 1yqt_A RNAse L inhibitor; ATP- 86.2 0.37 1.3E-05 49.1 3.1 25 304-328 45-69 (538)
497 2v1u_A Cell division control p 86.2 0.54 1.9E-05 44.0 4.1 44 286-329 23-67 (387)
498 3pfi_A Holliday junction ATP-d 86.0 0.68 2.3E-05 43.2 4.7 44 286-329 33-78 (338)
499 2qen_A Walker-type ATPase; unk 85.7 0.77 2.6E-05 42.3 4.9 40 285-329 15-54 (350)
500 1oxx_K GLCV, glucose, ABC tran 85.7 0.21 7.3E-06 48.3 1.0 25 306-330 31-55 (353)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.93 E-value=6.4e-26 Score=216.02 Aligned_cols=143 Identities=27% Similarity=0.326 Sum_probs=114.3
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCce
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~ 275 (355)
+||+.++++++.+.++.+|+||+|+||++|.++.++.+.+++ .++|.++|+||+||++....+.|.+++.... ..
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g-~~ 81 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQG-IR 81 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT-CC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcC-Cc
Confidence 678889999999999999999999999999999988888887 4799999999999999877889999986532 24
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhhhc--------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~~~--------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
++.+|+.++.|+++|++.+.+++.... ...+++|++||+||||||||||+|.+...+.|+++||+|++
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~ 157 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS 157 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-----------
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee
Confidence 667899999999999998888775321 24568999999999999999999999999999999999954
No 2
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.92 E-value=1.2e-25 Score=221.54 Aligned_cols=181 Identities=24% Similarity=0.288 Sum_probs=106.9
Q ss_pred ccCCCCCCCCCCCCcCCHHHHHHH---HhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcC
Q 018454 136 AFGPKGKRKRPKLLASDYESLVKR---ADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDS 212 (355)
Q Consensus 136 ~fg~~~qrkrp~l~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~ 212 (355)
..|...|-..|....--.++..++ ...|||||+++||+.+..+....+.|..+ +..+.+.
T Consensus 9 gcG~~lq~~~~~~~gy~p~~~~~~~~~~~~C~RC~~l~hy~~~~~v~~~~e~f~~~-----------------L~~~~~~ 71 (369)
T 3ec1_A 9 GCGAAIQFENPKNAGYAPKSVLEKDAEEVICQRCFRLKHYNEVQDVPLDDDDFLSM-----------------LHRIGES 71 (369)
T ss_dssp --------------------------------------------------CHHHHH-----------------HHHHHHH
T ss_pred CCCceeecCCCCCCCCCChHHhcCCCCCEEchhHHHhhccccccCCcCCHHHHHHH-----------------HHHhhcc
Confidence 344455555554444333332222 36899999999999887665444444332 2234578
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCC
Q 018454 213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSF 285 (355)
Q Consensus 213 sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~ 285 (355)
+|+||+|+|++||.++..+.+.+++ .++|+++|+||+||++.. ....|...+.+... ..++.+||++++
T Consensus 72 ~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~ 147 (369)
T 3ec1_A 72 KALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGI 147 (369)
T ss_dssp CCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTB
T ss_pred CcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCC
Confidence 8999999999999988888887776 378999999999999863 34567665433322 367889999999
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc-----CccccCCCCCeeEE
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK-----NVILFFPASVVWYW 343 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~-----~~~~vs~iPGtT~~ 343 (355)
|+++|++.|.++.. +..|+++|.||||||||||+|.+. ..+.+++.||+|++
T Consensus 148 gi~~L~~~I~~~~~------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~ 204 (369)
T 3ec1_A 148 GMAKVMEAINRYRE------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204 (369)
T ss_dssp THHHHHHHHHHHHT------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred CHHHHHHHHHhhcc------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence 99999999987752 457899999999999999999987 68899999999944
No 3
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.92 E-value=1.4e-25 Score=221.07 Aligned_cols=182 Identities=25% Similarity=0.275 Sum_probs=100.9
Q ss_pred cccCCCCCCCCCCCCcCCHHH-HHHHHhhhHHHHhhhcccCCcccccCCcchhhhhhhhccccchHHHHHHHHHhhhcCC
Q 018454 135 DAFGPKGKRKRPKLLASDYES-LVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSS 213 (355)
Q Consensus 135 ~~fg~~~qrkrp~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~ri~~el~kvi~~s 213 (355)
...|...|-..|....-..++ +.+....|||||+++||+.+..+..+.+.|..+ +..+...+
T Consensus 8 ~gcG~~lq~~~~~~~gy~p~~~~~~~~~~C~Rc~~l~hy~~~~~v~~~~e~f~~~-----------------l~~i~~~~ 70 (368)
T 3h2y_A 8 IGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCFRLKHYNEIQDVSLTDDDFLRI-----------------LNGIGKSD 70 (368)
T ss_dssp ------------------------------------------------CHHHHHH-----------------HHHHHHSC
T ss_pred CCCcceeEcCCCCCCCCCChHHccCCCcEEhhhhhhhccCccccCCCCHHHHHHH-----------------HHHHhccC
Confidence 344555555555554433333 223456899999999999887665444444322 22345678
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh----hHHHHHHHHhhhCC---ceEEEeeecCCCC
Q 018454 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFG 286 (355)
Q Consensus 214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~----~~~~w~~~l~~~~p---~~~f~vSa~~~~G 286 (355)
|+||+|+|++||..+....+.+++ .++|+++|+||+||++.. ....|...+.+... ..++.+||+++.|
T Consensus 71 ~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g 146 (368)
T 3h2y_A 71 ALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQG 146 (368)
T ss_dssp CEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTT
T ss_pred cEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcC
Confidence 899999999998766666666654 479999999999998754 35667665544333 2678899999999
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc------CccccCCCCCeeEE
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK------NVILFFPASVVWYW 343 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~------~~~~vs~iPGtT~~ 343 (355)
+++|++.|.++. .+..|+++|.||||||||||+|++. ..+.+++.||||++
T Consensus 147 i~~L~~~l~~~~------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~ 203 (368)
T 3h2y_A 147 IAELADAIEYYR------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD 203 (368)
T ss_dssp HHHHHHHHHHHH------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C
T ss_pred HHHHHhhhhhhc------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc
Confidence 999999998775 2467899999999999999999985 36779999999954
No 4
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.89 E-value=2.4e-24 Score=203.10 Aligned_cols=130 Identities=26% Similarity=0.303 Sum_probs=101.8
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CCc
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YPS 274 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p~ 274 (355)
+||+.++++++.+.++++|+||+|+||++|..+.++.++ ++ ++|.++|+||+||++....+.|.+++... ++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~- 77 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKR- 77 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC-
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe-
Confidence 688889999999999999999999999999999887766 44 69999999999999987788999998764 33
Q ss_pred eEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454 275 LAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY 342 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~ 342 (355)
+ .+|+.++.|+++|++.|.+.+ +++++||.||||||||||+|.+...+.++++||+|+
T Consensus 78 -v-~iSa~~~~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~ 135 (262)
T 3cnl_A 78 -V-ITTHKGEPRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITK 135 (262)
T ss_dssp -E-EECCTTSCHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHHHHHTTCC----------C
T ss_pred -E-EEECCCCcCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCcc
Confidence 3 679999999999888775432 689999999999999999999999999999999984
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=5.7e-19 Score=177.10 Aligned_cols=151 Identities=21% Similarity=0.206 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
..+..++...++.+|+||+|+|++++....+..+..++.. .++|+++|+||+|+........+.+.+ ...-..++.+
T Consensus 69 ~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 69 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFEREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEEC
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEE
Confidence 3456677788999999999999999887777777777765 479999999999985431111112222 2221245788
Q ss_pred eecCCCChHHHHHHHHHHHhhhc--------cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 280 SINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~--------~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
||++|.|+++|++.|.+.++... +...++|++||.||||||||||+|.+.....++++||+|++.....+.+
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~ 225 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI 225 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE
T ss_pred eccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE
Confidence 99999999999999987776432 1245899999999999999999999999889999999997755444444
Q ss_pred cc
Q 018454 352 FG 353 (355)
Q Consensus 352 ~~ 353 (355)
-|
T Consensus 226 ~g 227 (439)
T 1mky_A 226 DG 227 (439)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=5.4e-19 Score=177.13 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
.++..++...++.+|+||+|+|++++....+..+.+++.. .++|+++|+||+|+.+... ...+.+ ......++.+
T Consensus 70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~i 144 (436)
T 2hjg_A 70 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPI 144 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEEC
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEE
Confidence 3455667778899999999999999887777777777764 5899999999999976421 111111 1111246788
Q ss_pred eecCCCChHHHHHHHHHHHhhhc----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454 280 SINKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG 353 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~ 353 (355)
||.+|.|+++|++.|.+.++... +...++|++||.||||||||||+|++...+.++++||+|++.+...+.+-|
T Consensus 145 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 145 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp BTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT
T ss_pred eCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC
Confidence 99999999999999988776422 235689999999999999999999999999999999999887766665543
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=3.1e-17 Score=165.25 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEe
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~v 279 (355)
.++..++...++.+|+||+|+|++++....+..+.+++.. .++|+|+|+||+|+.... ..+.+.+. ......+.+
T Consensus 90 ~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~--~~~~e~~~-lg~~~~~~i 164 (456)
T 4dcu_A 90 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR--ANIYDFYS-LGFGEPYPI 164 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGG-GSSSSEEEC
T ss_pred HHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhh--hhHHHHHH-cCCCceEEe
Confidence 5566677788899999999999999887777788887765 689999999999987532 11112221 112245688
Q ss_pred eecCCCChHHHHHHHHHHHhhhc----cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 280 SINKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~----~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
||.++.|+++|++.+.+..+... .....+|+++|.||||||||||+|.+.....++++||+|++.+...+.+
T Consensus 165 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~ 240 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY 240 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE
T ss_pred ecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE
Confidence 99999999999999987765321 2456899999999999999999999998899999999997755444433
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=1.3e-17 Score=160.76 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=89.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh----HHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.++++|+||+|+|+++|..+.+ .++++|.. +..+++++||+||+||++... ...|.+.|.... ..++.+|+.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-CeEEEEecCC
Confidence 7999999999999999998877 78888864 346899999999999998744 678888886543 2456779999
Q ss_pred CCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCC
Q 018454 284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS 338 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP 338 (355)
+.|+++|++.+ .+-.++|+|.||||||||||+|.+.....++.++
T Consensus 161 ~~g~~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 161 QDSLADIIPHF----------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp HTTCTTTGGGG----------TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCHHHHHhhc----------CCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 99988876653 2346799999999999999999998878888777
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.65 E-value=8e-16 Score=147.36 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=92.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+.++|+||+|+|+++|..+.. .+++++.. +..++|+|+|+||+||++... ...|.+.+... ...++.+||+++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g~~~~~~SA~~g 153 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-GYDVLKVSAKTG 153 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-TCEEEECCTTTC
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 6899999999999999875543 46666643 236899999999999998652 45676666543 345788899999
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
.|+++|++.+. +..++++|.+|||||||||+|. ...+.++.+..
T Consensus 154 ~gi~~L~~~l~----------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 154 EGIDELVDYLE----------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TTHHHHHHHTT----------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred CCHHHHHhhcc----------CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 99999887763 3356999999999999999999 87788888875
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.63 E-value=1.3e-15 Score=149.75 Aligned_cols=121 Identities=23% Similarity=0.186 Sum_probs=93.1
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEee
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vS 280 (355)
++..+++++|+|++| |+++|..+.. .++++|.. +..++++|||+||+||++... ...|..+|.... ..++.+|
T Consensus 123 ~~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G-~~v~~~S 199 (358)
T 2rcn_A 123 GVKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIG-YRVLMVS 199 (358)
T ss_dssp -CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTT-CCEEECB
T ss_pred HHHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCC-CcEEEEe
Confidence 445578999999955 7888876655 68888753 346899999999999998765 567888886542 2367789
Q ss_pred ecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCc-cccCCCC
Q 018454 281 INKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPAS 338 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iP 338 (355)
+.++.|+++|...+ .+-.++|+|.||||||||||.|.+... +.++.++
T Consensus 200 a~~~~gl~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL----------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp TTTTBTHHHHHHHH----------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred cCCCcCHHHHHHhc----------CCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 99999998877653 234679999999999999999999887 7777765
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.62 E-value=2.3e-15 Score=143.92 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=87.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-hcCCCcEEEEEeccCCCChhh---HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~---~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+.++|++|+|+|+++|..+. ..+.+++.. ...+.|+|||+||+||.+... ...|.+.+... ..+|.+||+++
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~--~~~~~~SAktg 157 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL--YPIVKTSAKTG 157 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT--SCEEECCTTTC
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh--CcEEEEECCCC
Confidence 688999999999999987443 345555543 125799999999999987643 34566655432 55788999999
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
.|+++|++.+. +-.++++|.+|+|||||||+|.+...+.++.++.
T Consensus 158 ~gv~~lf~~l~----------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 158 MGIEELKEYLK----------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp TTHHHHHHHHS----------SSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCHHHHHHHhc----------CCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 99999988763 2356899999999999999999988777777664
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.21 E-value=2.9e-13 Score=132.00 Aligned_cols=129 Identities=18% Similarity=0.103 Sum_probs=93.0
Q ss_pred CEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEeeecCCCChHHHHH
Q 018454 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASINKSFGKGSLLS 292 (355)
Q Consensus 214 DvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~vSa~~~~Gi~~Ll~ 292 (355)
|.+..|+|++.++++.++.+.+++.....++++++++||+|+++......|..++.. .++.....+++..+.+.+.+.+
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 455567788888788888888777544356888999999999999988999999876 3233333345555566666655
Q ss_pred HHHHHHhhh--------------c-cccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 293 VLRQFARLK--------------S-DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 293 ~L~q~~~~~--------------~-~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
.+.+..... . +.....|+++|+||||||||||+|.+.. ..+++.|++|++
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~ 203 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRG 203 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeec
Confidence 543332110 1 2456889999999999999999999877 667888988743
No 13
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=3.7e-10 Score=97.97 Aligned_cols=107 Identities=18% Similarity=0.039 Sum_probs=63.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+||.+..........+.......++.+||+
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 356889999999999886432 222333322 1 146899999999999654332222333333445567889999
Q ss_pred CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhH
Q 018454 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS 321 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSS 321 (355)
++.|+++|++.|.+.+...... +--+.+|+||||
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~~-----~~~~~~n~gkSs 194 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPGL-----WESENQNSGPSS 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGGG-----TCC---------
T ss_pred CCCCHHHHHHHHHHHHHhhhhh-----hcccccCCCCCC
Confidence 9999999999988776532211 223567999997
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.82 E-value=1.7e-08 Score=89.88 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=71.3
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH----HHHHhhh------
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW----LRVLSKE------ 271 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w----~~~l~~~------ 271 (355)
++...+.....+|+||+|+|+.++.......+..++.. .++|+|+|+||+|+.+....... .+.+...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 44455555667899999999998776666666666654 57899999999999986543332 3333332
Q ss_pred CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 272 YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 272 ~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
....+|.+||+++.|+++|++.|.+.++.
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 34557889999999999999999887753
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.78 E-value=2.1e-08 Score=86.63 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=70.8
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH----hhhCCceE
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL----SKEYPSLA 276 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l----~~~~p~~~ 276 (355)
.++...+.....+|+|++|+|+.++.......+..++.. .+.|+++|+||+|+.+........+.+ .......+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 345555566677799999999988766655566666665 479999999999998755433333322 22233567
Q ss_pred EEeeecCCCChHHHHHHHHHHHh
Q 018454 277 FHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+.+||+++.|+++|++.|.+.+.
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999987653
No 16
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.77 E-value=1.6e-08 Score=96.48 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=78.2
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHH-HHHHHhhcCCCcEEEEEeccCCC-ChhhHHHHHHHHhhhCC--ce
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYP--SL 275 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l-~~~L~~~~~~k~vILVlNK~DLv-p~~~~~~w~~~l~~~~p--~~ 275 (355)
..+...+...+..+|+||+|+|+.++....+..+ ...+.. .+.|+++|+||+|++ +......+...+...++ ..
T Consensus 80 ~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 80 HSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence 3455666778899999999999998876655554 455543 478999999999998 66666777777776653 56
Q ss_pred EEEeeecCCCChHHHHHHHHHHHhh
Q 018454 276 AFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 276 ~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+|.+||+++.|+++|++.|.++++.
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 7889999999999999999988754
No 17
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.76 E-value=4e-08 Score=85.27 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=68.6
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhhhCCceEE
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSKEYPSLAF 277 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~~~p~~~f 277 (355)
++...+.....+|++|+|+|+.++.......+.+++.. .+.|+++|+||+|+.+..... .+.+.+.......++
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 34444444556699999999998876655556666654 578999999999998765433 233334333345678
Q ss_pred EeeecCCCChHHHHHHHHHHH
Q 018454 278 HASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.+|++++.|+++|++.|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 899999999999999987665
No 18
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.63 E-value=1.6e-07 Score=93.70 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=88.9
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhh----CCceEEEe
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKE----YPSLAFHA 279 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~----~p~~~f~v 279 (355)
+...+..+|++++|+|+.++....+..+..++.. .++++++|+||+|++.... ...+.+.+... ....++.+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 3456788999999999998776555555555554 5799999999999986432 23343333322 23456789
Q ss_pred eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEe
Q 018454 280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLL 349 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~ 349 (355)
||++|.|+++|++.+.+....... .+ +|+.+|.+++.... ..|.|---+-.|++-.
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~~~~----~i---------~t~~ln~~l~~~~~-~~~~~~~~ki~y~~q~ 390 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYASYTT----KV---------PSSAINSALQKVLA-FTNLPRGLKIFFGVQV 390 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTC----CC---------CHHHHHHHHHHHHT-TCCCSTTCCEEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHhhcc----cC---------CHHHHHHHHHHHHH-cCCCCCCcEEEEEEec
Confidence 999999999999999877654321 11 69999999987655 4455632355566544
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.62 E-value=1.6e-08 Score=86.89 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=63.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHH---HHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++... ..+..+ +.. ...+.|+++|+||+||.... ....-...+...+....+.+||+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSF--EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecC
Confidence 56789999999999876422 122222 222 12478999999999996432 11222333334445567889999
Q ss_pred CCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhH
Q 018454 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS 321 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSS 321 (355)
++.|++++++.|.+.+... -|..++||||
T Consensus 152 ~~~~v~~l~~~l~~~~~~~----------~~~~~~gkss 180 (181)
T 3t5g_A 152 ENQTAVDVFRRIILEAEKM----------DGACSQGKSS 180 (181)
T ss_dssp SHHHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred CCCCHHHHHHHHHHHHHHh----------cCCcccCcCC
Confidence 9999999999988776421 2667889987
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.62 E-value=7.2e-08 Score=80.60 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeee
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa 281 (355)
........+..+|++|+|+|+.++.......+..++.. .+.|+++|+||+|+..... ....+........+.+|+
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa 143 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSS 143 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEec
Confidence 33445567889999999999999866555566666654 5799999999999976521 111122212124678999
Q ss_pred cCCCChHHHHHHHHHH
Q 018454 282 NKSFGKGSLLSVLRQF 297 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~ 297 (355)
+++.|+++|++.|.+.
T Consensus 144 ~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 144 EHARGLEELLEAIWER 159 (161)
T ss_dssp TTTBSHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHh
Confidence 9999999999988765
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.61 E-value=9.5e-08 Score=82.80 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=62.8
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.+.... ......+...+...++.+||+++
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 163 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46788999999999998643211 122222322 1247899999999999764321 12233344444456788999999
Q ss_pred CChHHHHHHHHHHHhhh
Q 018454 285 FGKGSLLSVLRQFARLK 301 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~ 301 (355)
.|++++++.|.+.+...
T Consensus 164 ~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988776543
No 22
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.60 E-value=2.3e-07 Score=93.12 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhC----C
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEY----P 273 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~----p 273 (355)
..........+..+|++|+|+|+.++....+..+..++.. .++|+|+|+||+||++.. ..++..+.+.... .
T Consensus 265 ~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
T 4dcu_A 265 KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY 342 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC
Confidence 3334445567899999999999999877767777777765 579999999999998642 1233333333332 2
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCC-C-CCee-EEEEEEE
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-A-SVVW-YWFYCQL 348 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~-i-PGtT-~~~y~~l 348 (355)
..++.+||++|.|+++|++.|.+.+.....+ + .++.+|.++........| . .|.. +-.|++-
T Consensus 343 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~--~-----------~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q 407 (456)
T 4dcu_A 343 APILFMSALTKKRIHTLMPAIIKASENHSLR--V-----------QTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQ 407 (456)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHHHHTCC--C-----------CHHHHHHHHHHHHHHSCCCEETTEECCEEEEEE
T ss_pred CCEEEEcCCCCcCHHHHHHHHHHHHHHhccc--C-----------CHHHHHHHHHHHHHhCCCCCCCCceeeEEEEec
Confidence 4577899999999999999998777543321 1 356778777543332222 1 2444 5555543
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.58 E-value=8.7e-08 Score=91.42 Aligned_cols=97 Identities=20% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEe
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~v 279 (355)
.+...+...+..+|++|+|+|+.++....+..+.+.+.....+.|+|+|+||+|+.+... ...+.+.+ .....++.+
T Consensus 75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~i 152 (301)
T 1wf3_A 75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRML 152 (301)
T ss_dssp HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEE
Confidence 355667778999999999999998866555555555554223789999999999986543 33344433 112357889
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||+++.|+++|++.|.+.++
T Consensus 153 SA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 153 SALDERQVAELKADLLALMP 172 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHhcc
Confidence 99999999999999987654
No 24
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.56 E-value=1.6e-07 Score=79.23 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=62.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCc--chHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~--~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++.... ...+..++.. ...+.|+++|+||+||.+......+...+... ....++.+|
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 149 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECc
Confidence 3567899999999999875321 1122222221 12578999999999998753334444444321 234577899
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
|+++.|+++|++.|.+.+.
T Consensus 150 a~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999887653
No 25
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.55 E-value=2e-07 Score=80.94 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=63.1
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--c-------CCCcEEEEEeccCCCChhhHHHHHHHHh-----h
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--C-------KHKHMILLLNKCDLVPAWATKGWLRVLS-----K 270 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~-------~~k~vILVlNK~DLvp~~~~~~w~~~l~-----~ 270 (355)
..+..+|++|+|+|+.++... ..+..++.. . . .+.|+|+|+||+||........+...+. .
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRL--CVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG 159 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred HHHhcCCEEEEEEECCcHHHH--HHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence 357889999999999987432 222223222 1 0 2789999999999987643333433332 2
Q ss_pred hCCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 271 EYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.....+|.+||+++.|+++|++.|.+.+..
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 244567889999999999999999877654
No 26
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.54 E-value=1.3e-07 Score=83.10 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=61.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+..........+...+...+|.+|++++.
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDD 167 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 35688999999999987643211 1222223221 236899999999999543332223333333334457889999999
Q ss_pred ChHHHHHHHHHHHhh
Q 018454 286 GKGSLLSVLRQFARL 300 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~ 300 (355)
|+++|++.|.+.+..
T Consensus 168 gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 168 NVNEIFFTLAKLIQE 182 (213)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998877654
No 27
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.53 E-value=2.7e-09 Score=104.75 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=62.9
Q ss_pred ccccchHHHHHHHHH--hhhcCCCEEEEEecCCCCCCC-c-chHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454 193 MFEKGQSKRIWGELY--KVIDSSDVVVQVLDARDPQGT-R-CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL 268 (355)
Q Consensus 193 ~f~~~~s~ri~~el~--kvi~~sDvVL~VvDardp~~s-~-~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l 268 (355)
.+.+.|.+.+++.+. ++++..|+||.|+|+|.|..+ . ...+.+ +.- .+| .. ..|....
T Consensus 65 ~l~p~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~-l~~---~~~------------rl--~~~~~l~ 126 (364)
T 2qtf_A 65 QLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELAR-LKY---ELP------------II--KETYTKS 126 (364)
T ss_dssp CCCHHHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHH-HHH---HHH------------HH--HHC----
T ss_pred CCCHHHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHHHH-Hhh---hch------------hh--hhhhHHH
Confidence 356788888888887 799999999999999998654 2 122222 211 111 11 2343222
Q ss_pred hhhCCceEEE------eeecCCCC---hHHHHHHHHHHHhhh------ccccceE-EEEeecCCCChhHHHHHhhccCcc
Q 018454 269 SKEYPSLAFH------ASINKSFG---KGSLLSVLRQFARLK------SDKQAIS-VGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 269 ~~~~p~~~f~------vSa~~~~G---i~~Ll~~L~q~~~~~------~~~~~i~-V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
... ..+.|. +....... +..|...|.+..... ..+.++. |++||+||||||||||+|.+...
T Consensus 127 ~~~-~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~- 204 (364)
T 2qtf_A 127 KIG-EQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ- 204 (364)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC---
T ss_pred Hhc-CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-
Confidence 111 111111 00000000 112222222221100 1123455 99999999999999999998774
Q ss_pred ccCCCCCeeEEEEEEEe
Q 018454 333 LFFPASVVWYWFYCQLL 349 (355)
Q Consensus 333 ~vs~iPGtT~~~y~~l~ 349 (355)
.+++.||+|++.+..-+
T Consensus 205 ~~~~~~~~T~d~~~~~i 221 (364)
T 2qtf_A 205 KVDTKLFTTMSPKRYAI 221 (364)
T ss_dssp ---------CCSCEEEE
T ss_pred cccCCcccccCCEEEEE
Confidence 67788888855444333
No 28
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.1e-08 Score=97.81 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=40.4
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeeecc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFYFG 353 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~~~ 353 (355)
.+|++||+||||||||+|+|.+.+ ..++++||||++-....+.|-|
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~ 118 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKG 118 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCC
Confidence 589999999999999999999876 7789999999887777777754
No 29
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.52 E-value=5.8e-07 Score=89.65 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=85.6
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhh----CCceEEEe
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKE----YPSLAFHA 279 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~----~p~~~f~v 279 (355)
....+..+|++|+|+|+.++....+..+..++.. .++++|+|+||+||++... ..+..+.+... ....++.+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 4457889999999999999887666666666654 5899999999999986432 22333333332 23457789
Q ss_pred eecCCCChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhccCccccCC-CC-Cee-EEEEEEE
Q 018454 280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVILFFP-AS-VVW-YWFYCQL 348 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~-iP-GtT-~~~y~~l 348 (355)
||++|.|+++|++.+.+.+.....+ + +++.+|.++........| .+ |-. +-.|++-
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~~~~~--~-----------~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q 387 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASENHSLR--V-----------QTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQ 387 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHHHTCC--C-----------CHHHHHHHHHHHHHHSCCCEETTEECCEEEEEE
T ss_pred ecccCCCHHHHHHHHHHHHHHhhcC--C-----------CHHHHHHHHHHHHHhCCCCccCCcceeEEeEec
Confidence 9999999999999988776533211 1 367788887654333322 11 433 5566553
No 30
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.52 E-value=2.5e-07 Score=79.78 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=62.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcc----hHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCc-eEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC----HHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS-LAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~----~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~-~~f~vS 280 (355)
.+..+|++|+|+|+.++....+ ..+..++.. ...+.|+++|+||+||.+....+...+.+ ..+.. ..+.+|
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~S 172 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV-DPEGKFPVLEAV 172 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH-CTTCCSCEEECB
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH-HhcCCceEEEEe
Confidence 6789999999999986532222 233334432 12578999999999997653333333333 33444 678899
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
|+++.|++++++.|.+.+.
T Consensus 173 a~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 173 ATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp GGGTBTHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHH
Confidence 9999999999998876654
No 31
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.51 E-value=1.2e-07 Score=82.69 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=62.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh---hhHHHHHHHHhhhCCce-EEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSKEYPSL-AFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~---~~~~~w~~~l~~~~p~~-~f~vSa~ 282 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||... .........+....... .+.+||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 6778999999999998743222 2333444444457899999999999753 12222223333333333 7889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|++++++.|.+.+.
T Consensus 171 ~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877653
No 32
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.50 E-value=2e-07 Score=78.22 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=61.2
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||.+......+...+... ....++.
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence 367899999999999987422 223333322 12478999999999997653334444443322 2234678
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+||+++.|+++|++.|.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred cccCCCcCHHHHHHHHHHHH
Confidence 99999999999999987654
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.50 E-value=1.9e-07 Score=78.50 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=61.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
.+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||............+.......++.+||+++.|
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 72 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN 151 (170)
T ss_dssp HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 5678999999999987643211 1222223221 2478999999999995433322233333333345678899999999
Q ss_pred hHHHHHHHHHHHhh
Q 018454 287 KGSLLSVLRQFARL 300 (355)
Q Consensus 287 i~~Ll~~L~q~~~~ 300 (355)
+++|++.|.+.+..
T Consensus 152 v~~l~~~l~~~~~~ 165 (170)
T 1g16_A 152 VNEIFFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877643
No 34
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.49 E-value=5.2e-07 Score=89.08 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----C--Cc
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y--PS 274 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~--p~ 274 (355)
+.......+..+|++|+|+|+.++. ..........+.. ...+|+|+|+||+||++......+.+.+... . ..
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (403)
T 3sjy_A 88 LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 166 (403)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCC
Confidence 4455666788999999999999875 2222222223332 2346899999999999865444443333322 1 34
Q ss_pred eEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 275 LAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.++.+||+++.|+++|++.|.+.++.
T Consensus 167 ~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 167 PIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcChHHHHHHHHHhCCC
Confidence 57889999999999999999987654
No 35
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.49 E-value=2.2e-07 Score=77.37 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=60.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+..+|.+++|+|+.++..... ..+...+... ..+.|+++|+||+|+.+..........+...+...++.+|++++.
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQ 150 (166)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 5667999999999987642211 1222222221 137899999999999874333333334444444567889999999
Q ss_pred ChHHHHHHHHHHH
Q 018454 286 GKGSLLSVLRQFA 298 (355)
Q Consensus 286 Gi~~Ll~~L~q~~ 298 (355)
|++++++.|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 151 GVEDAFYTLVREI 163 (166)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987665
No 36
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.48 E-value=2.3e-07 Score=80.30 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=61.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA 279 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v 279 (355)
.+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||.+......+...+... ....++.+
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRM--GVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKS 163 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTH--HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEc
Confidence 56789999999999987532 222233322 12478999999999998653333343433221 23457789
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||+++.|+++|++.|.+.+.
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 164 SSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHHH
Confidence 99999999999999987765
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.47 E-value=2.6e-07 Score=79.31 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc--CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeee
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~--~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa 281 (355)
....+..+|++|+|+|+.++..... ..+...+.... .+.|+++|+||+||.+.. ........+.......++.+|+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 4457889999999999988653222 12222233221 478999999999997532 1112222232333445788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|+++|++.|.+.+.
T Consensus 167 ~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876654
No 38
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.47 E-value=3.7e-07 Score=78.68 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=62.8
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||..........+.+.. .....++.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQG 158 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEE
Confidence 467899999999999987532 222223322 1257899999999999865433444444432 12345778
Q ss_pred eeecCCCChHHHHHHHHHHHh
Q 018454 279 ASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+||+++.|+++|++.|.+.+.
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 159 CSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987764
No 39
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=3.6e-07 Score=79.12 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=62.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEEe
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHA 279 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~v 279 (355)
.+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+||..........+.+.. .....++.+
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 157 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred HhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEc
Confidence 56889999999999987532 223333322 1 257899999999999764333334444332 123467889
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||+++.|+++|++.|.+.+.
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 158 CALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp BTTTTBTHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987764
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.46 E-value=2.2e-07 Score=78.94 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=60.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHH---HHhhcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~---L~~~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|++|+|+|+.++... ..+..+ +.....+.|+|+|+||+|+.+.... ..-...+.......++.+||+++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESF--VNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKEN 155 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 57889999999999986422 222333 3333457899999999998754321 11122232333446788999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|+++|++.|.+.+.
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 156 VNVEEMFNCITELVL 170 (181)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999877654
No 41
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.46 E-value=4.7e-07 Score=77.01 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=60.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------CC--ceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------YP--SLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------~p--~~~f~vS 280 (355)
.+..+|++|+|+|+.++...........+.. .+.|+++|+||+||.... .......+... +. ..++.+|
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 5678999999999988754333333333332 578999999999998632 12222223221 11 3577899
Q ss_pred ecCCCChHHHHHHHHHHHhh
Q 018454 281 INKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~ 300 (355)
|+++.|+++|++.|.+.+..
T Consensus 152 a~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhhhh
Confidence 99999999999998876643
No 42
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.45 E-value=7.1e-07 Score=76.37 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=61.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEEe
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA 279 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~v 279 (355)
.+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+||.+......+.+.+... ....++.+
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 159 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159 (183)
T ss_dssp TTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence 56789999999999987432 233333332 1 3578999999999997643333444443321 22357789
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||+++.|+++|++.|.+.+.
T Consensus 160 Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 160 SAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp BGGGTBTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 43
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.45 E-value=2.2e-07 Score=81.28 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=61.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhh-------------HHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+++|+||+||.+... .......+...+.
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 57789999999999886532221 23333443345899999999999975321 1111222322233
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
. ..+.+||+++.|+++|++.|.+.+..
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 3 57889999999999999988766543
No 44
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.44 E-value=3.1e-07 Score=95.71 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=83.9
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh---hHHHHHHHHhhhCCceEEE
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLAFH 278 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~---~~~~w~~~l~~~~p~~~f~ 278 (355)
+..++...+..+|.+|+|+|+.+............... .+.|+|+|+||+|+.... ....|.+.+. ..+..++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg-~~~~~vi~ 160 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADPERVAEEIEDIVG-IDATDAVR 160 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCHHHHHHHHHHHTC-CCCTTCEE
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccHHHHHHHHHHHhC-CCcceEEE
Confidence 33455667888999999999998765433332222222 578999999999997632 2233433331 11234688
Q ss_pred eeecCCCChHHHHHHHHHHHhhhcc--ccceEEEEeec---CCCChhHHHHHhhc
Q 018454 279 ASINKSFGKGSLLSVLRQFARLKSD--KQAISVGFVGY---PNVGKSSVINTLRT 328 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~~~~~--~~~i~V~~vG~---pNVGKSSLIN~Ll~ 328 (355)
+||+++.|+++|++.|.+.++.... ..+....++.. |++|+.++++.+-+
T Consensus 161 vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG 215 (599)
T 3cb4_D 161 CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNG 215 (599)
T ss_dssp ECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred eecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeC
Confidence 9999999999999999888764321 23445445454 89999998887765
No 45
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.44 E-value=3.2e-07 Score=79.62 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=60.8
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhc---CCCcEEEEEeccCCCChhhHHHHHHHHh-hh---CCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHC---KHKHMILLLNKCDLVPAWATKGWLRVLS-KE---YPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~---~~k~vILVlNK~DLvp~~~~~~w~~~l~-~~---~p~~~f~ 278 (355)
..+..+|++|+|+|+.++..... ..+..++.... .+.|+++|+||+||..........+.+. .. ....++.
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA 165 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence 35788999999999988632111 12222222111 4789999999999976433344444442 11 2345778
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+||+++.|+++|++.|.+.+
T Consensus 166 ~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 166 SDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred ccCCCCcCHHHHHHHHHHHH
Confidence 99999999999999987765
No 46
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.44 E-value=8e-07 Score=79.95 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=60.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhCC--ceEEEe
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEYP--SLAFHA 279 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~p--~~~f~v 279 (355)
....+|++|+|+|+.++...... .+...+.....+.|+++|+||+||.+.... ......+..... ..+|.+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 46778999999999987654322 233333332237899999999999864321 112333333333 567889
Q ss_pred eecCCCChHHHHHHHHHHHh
Q 018454 280 SINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~ 299 (355)
||+++.|+++|++.|.+.+.
T Consensus 185 SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999998877654
No 47
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.44 E-value=3.5e-07 Score=78.42 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=62.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.+..........+...+...++.+||+++.
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4667999999999987642211 112222222 2247899999999999865443444444444445567889999999
Q ss_pred ChHHHHHHHHHHHhh
Q 018454 286 GKGSLLSVLRQFARL 300 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~ 300 (355)
|+++|++.|.+.+..
T Consensus 152 gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 152 GVDDAFYTLVREIRK 166 (189)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988776653
No 48
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.43 E-value=2.1e-07 Score=79.47 Aligned_cols=90 Identities=12% Similarity=-0.008 Sum_probs=60.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-----------HHHHHHHhhhCC-c
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-----------KGWLRVLSKEYP-S 274 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-----------~~w~~~l~~~~p-~ 274 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+++|+||+||.+.... ..-...+...+. .
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 57789999999999876432211 233344433357999999999999754321 111222333333 3
Q ss_pred eEEEeeecCCCChHHHHHHHHHHH
Q 018454 275 LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 275 ~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+.+||+++.|+++|++.|.+.+
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999887654
No 49
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=2.2e-07 Score=78.03 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=60.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCCh----hhHHHHHHHHhhhCCceEEEe
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPA----WATKGWLRVLSKEYPSLAFHA 279 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~----~~~~~w~~~l~~~~p~~~f~v 279 (355)
..+..+|++|+|+|+.++... ..+..++ .. ...+.|+++|+||+|+.+. .........+.......++.+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET 148 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 457889999999999886432 2233332 22 1257899999999999753 222333344444445567889
Q ss_pred eecCCCChHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~ 297 (355)
||+++.|+++|++.|.+.
T Consensus 149 Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 149 SAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CTTTCTTHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999988654
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=3.5e-07 Score=77.94 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=61.2
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
....+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+.. ........+.......++.+||+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 3456789999999999988643211 1222223221 2578999999999998532 11222223333334457889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 157 ~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELK 173 (180)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877654
No 51
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.42 E-value=4.2e-07 Score=79.00 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=61.2
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||........+.+.+... ....+|.
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKI--EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHccCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence 456889999999999886432 222333322 12578999999999998653334444444321 2245678
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+||+++.|+++|++.|.+.+
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999987654
No 52
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.42 E-value=6.4e-07 Score=79.35 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=64.2
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc-----CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEE
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC-----KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAF 277 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~-----~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f 277 (355)
......+..+|++|+|+|+.++.. ...+..++.... .+.|+++|+||+||.... ........+.......++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 334457789999999999987642 233444554311 468999999999997532 112233334344445678
Q ss_pred EeeecCCCChHHHHHHHHHHHh
Q 018454 278 HASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+||+++.|+++|++.|.+.+.
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999998876553
No 53
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.41 E-value=3.8e-07 Score=76.68 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=62.0
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|++|+|+|+.++..... ..+...+.. ..++.|+++|+||+||.... ........+.......++.+||+++
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNA 153 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 35788999999999988653211 122233333 23568899999999997532 2233334444444566788999999
Q ss_pred CChHHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQFA 298 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~ 298 (355)
.|+++|++.|.+.+
T Consensus 154 ~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 154 ININELFIEISRRI 167 (170)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999987654
No 54
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.41 E-value=2.1e-07 Score=80.30 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..++..+..+|++|+|+|+.++.......+...+... ..+.|+|+|+||+||..... . +.......++.+||+
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~----~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--G----MSEVNGHALIRLSAR 148 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--E----EEEETTEEEEECCTT
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--h----hhhccCCceEEEeCC
Confidence 3445567899999999999988765444444444432 23689999999999854211 0 111123456789999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 149 ~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TCTTHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999987653
No 55
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.41 E-value=5.1e-07 Score=76.98 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=60.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCc-chHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTR-CHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|++|+|+|+.++.... ...+...+.. ...+.|+++|+||+||..... .......+.......++.+|++++
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTA 159 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 3567899999999998764311 1122222322 124788999999999975321 122223333334556788999999
Q ss_pred CChHHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQFA 298 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~ 298 (355)
.|+++|++.|.+.+
T Consensus 160 ~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 160 TNVKEIFYEIARRL 173 (181)
T ss_dssp TTHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987654
No 56
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.41 E-value=2.1e-07 Score=79.67 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=61.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHH-------------HHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATK-------------GWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~-------------~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+++|+||+||.+..... .....+.....
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 56789999999999876432221 2333444333489999999999997643211 11122333333
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHHh
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
. .++.+||+++.|+++|++.|.+.+.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 3 6788999999999999999887663
No 57
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.41 E-value=8.8e-07 Score=76.32 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=59.1
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h--cCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+||........+.+.+.. .....++.
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 161 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 161 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEE
Confidence 357889999999999987432 223333322 1 357899999999999764323333333321 12345788
Q ss_pred eeecCCCChHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q 296 (355)
+||+++.|+++|++.|.+
T Consensus 162 ~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 162 CCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CBTTTTBTHHHHHHHHHT
T ss_pred ccCCCCcCHHHHHHHHHh
Confidence 999999999999998753
No 58
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=3.9e-07 Score=79.21 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=59.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+....++.|+++|+||+||.+.... ..-...+...+.
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 57789999999999886432111 233344443358999999999999764211 111122222223
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
. ..+.+||+++.|+++|++.|.+.+
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 567899999999999999887654
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.40 E-value=4.5e-07 Score=79.30 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc-----CCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEeee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASI 281 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~-----~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~vSa 281 (355)
.+..+|++|+|+|+.++..... ..+...+.... .+.|+++|+||+||............+.. .....+|.+||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 5678999999999988643211 11222222211 46899999999999854332222233322 34456788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|+++|++.|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876654
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.40 E-value=3.8e-07 Score=76.53 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+.. ........+........+.+|++++.|
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 5678999999999988642211 12222232222578999999999997532 112222233333445678899999999
Q ss_pred hHHHHHHHHHHH
Q 018454 287 KGSLLSVLRQFA 298 (355)
Q Consensus 287 i~~Ll~~L~q~~ 298 (355)
+++|++.|.+.+
T Consensus 154 i~~l~~~l~~~~ 165 (168)
T 1z2a_A 154 VSEVFKYLAEKH 165 (168)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 61
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.40 E-value=4.6e-07 Score=79.39 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=61.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||........+.+.+... ....++.
T Consensus 92 ~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 169 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA 169 (192)
T ss_dssp HHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEE
Confidence 356789999999999987421 223333322 12478999999999997653334444444322 2234678
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+||+++.|+++|++.|.+.+
T Consensus 170 ~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHHT
T ss_pred CcCCCcCCHHHHHHHHHHHH
Confidence 99999999999999987654
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.39 E-value=7.1e-07 Score=76.84 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=58.9
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
...+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+|+..... .+...+.+ ......++.+||++
T Consensus 111 ~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 187 (208)
T 3clv_A 111 PLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYA-QDNNLLFIQTSAKT 187 (208)
T ss_dssp HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHH-HHTTCEEEEECTTT
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHH-HHcCCcEEEEecCC
Confidence 3467899999999999887432 223333322 123589999999999432222 22233333 23455678899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+.+
T Consensus 188 ~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 188 GTNIKNIFYMLAEEI 202 (208)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887655
No 63
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.39 E-value=4.6e-07 Score=77.71 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=59.6
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec-C
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN-K 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~-~ 283 (355)
.+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.... ........+...+....+.+|++ +
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP 165 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCC
Confidence 4667999999999988642211 122222222 23578999999999997522 22222333333344567889999 9
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|++++++.|.+.+
T Consensus 166 ~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVI 180 (183)
T ss_dssp CBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987765
No 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.39 E-value=5.4e-07 Score=78.08 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=61.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... .......+...+...++.+||+++
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN 169 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 36788999999999987642211 1222233321 24789999999999975321 122233333334456788999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|+++|++.|.+.+.
T Consensus 170 ~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 170 INVKQVFERLVDVIC 184 (189)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999877654
No 65
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.39 E-value=4.4e-07 Score=76.10 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=59.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---h-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++... ..+..++. . ..++.|+++|+||+||.+.... ..-...+........+.+||+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 457889999999999876421 22233322 2 2357889999999999653211 111222333345667889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 152 ~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 152 TSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCTTHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.39 E-value=5.6e-07 Score=79.76 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=62.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCCh-hhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~-~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||... .........+.......+|.+||+++.
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4677999999999998653221 122222222 2235899999999999865 333344444545555668889999999
Q ss_pred ChHHHHHHHHHHHhh
Q 018454 286 GKGSLLSVLRQFARL 300 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~ 300 (355)
|++++++.|.+.+..
T Consensus 161 gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 161 NFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999877653
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.38 E-value=5.4e-07 Score=77.88 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=60.3
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+|+.+..........+...+...++.+|++++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 167 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTR 167 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 46788999999999988643211 1122222221 13789999999999976332222233333334456788999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|++++++.|.+.+.
T Consensus 168 ~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 168 QGVEDAFYTLVREIR 182 (190)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999877664
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.38 E-value=7.9e-07 Score=75.52 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=60.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc-----CCCcEEEEEeccCCCChhhHHHHHHHHhh-hCCceEEEee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHAS 280 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~-----~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~p~~~f~vS 280 (355)
..+..+|++|+|+|+.++..... ..+...+.... .+.|+++|+||+|+........-...+.. .....++.+|
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEe
Confidence 46788999999999988653211 11222222211 56899999999999743322222222322 3445678899
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
++++.|++++++.|.+.+.
T Consensus 155 a~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876653
No 69
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.37 E-value=9.2e-07 Score=89.84 Aligned_cols=89 Identities=21% Similarity=0.248 Sum_probs=63.0
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+..+..+..+|++|+|+|+.++....+..+.+.+ .++|+|+|+||+||.+....+...+.+. ....++.+||++
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~--~~~~~i~iSAkt 388 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLG--TDRHMVKISALK 388 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHT--CSTTEEEEEGGG
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhc--CCCcEEEEECCC
Confidence 3445678899999999999988654444444333 4789999999999975422222222221 223467889999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+..
T Consensus 389 g~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 389 GEGLEKLEESIYRET 403 (482)
T ss_dssp TCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988764
No 70
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.37 E-value=8.2e-07 Score=75.23 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=60.0
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
...+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||..... .......+.......++.+||++
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 161 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 346778999999999988643211 112222322 225789999999999965321 11122223333445678899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|++++++.|.+.+
T Consensus 162 ~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 162 GENVEDAFLEAAKKI 176 (179)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887654
No 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=4.6e-07 Score=78.60 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=61.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+..........+...+...+|.+||+++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMN 155 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCC
Confidence 4577999999999987643211 1222233321 24689999999999986433222333333334456788999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|+++|++.|.+...
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 156 YNVKELFQELLTLET 170 (199)
T ss_dssp BSHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987764
No 72
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.37 E-value=3e-07 Score=82.19 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCCh-------------hhHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~-------------~~~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|++||+||+||... .........+.....
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 5778999999999998753322 2333444444457899999999999652 111122223333334
Q ss_pred c-eEEEeeecCCCC-hHHHHHHHHHHHh
Q 018454 274 S-LAFHASINKSFG-KGSLLSVLRQFAR 299 (355)
Q Consensus 274 ~-~~f~vSa~~~~G-i~~Ll~~L~q~~~ 299 (355)
. ..+.+||+++.| +++|++.|.+.+.
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 4 678899999998 9999998877654
No 73
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.37 E-value=6.2e-07 Score=75.57 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=59.6
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc--CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~--~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+..+|++|+|+|+.++... ..+..++. ... .+.|+++|+||+||.... ........+........+.+||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp HHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hccCCEEEEEEECCChHHH--HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 5568999999999886432 12222222 221 378999999999997432 222333344444556678899999
Q ss_pred CCChHHHHHHHHHHHh
Q 018454 284 SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~ 299 (355)
+.|++++++.|.+.+.
T Consensus 151 ~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 151 HHNTRELFEGAVRQIR 166 (169)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998876653
No 74
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.36 E-value=5.2e-07 Score=78.70 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhc----CCCcEEEEEeccCCCC-hh-hHHHHHHHHhhhCCceE
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC----KHKHMILLLNKCDLVP-AW-ATKGWLRVLSKEYPSLA 276 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~----~~k~vILVlNK~DLvp-~~-~~~~w~~~l~~~~p~~~ 276 (355)
....+..+|++|+|+|+.++... ..+..++. ... .+.|+++|+||+||.+ .. ........+...+...+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 167 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDF 167 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEE
Confidence 34567899999999999886531 22333332 221 4789999999999986 22 21222233333445667
Q ss_pred EEeeecC-CCChHHHHHHHHHHHh
Q 018454 277 FHASINK-SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 277 f~vSa~~-~~Gi~~Ll~~L~q~~~ 299 (355)
+.+|+++ +.|+++|++.|.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC-------CHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHH
Confidence 8899999 9999999998876553
No 75
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.36 E-value=7.8e-07 Score=74.74 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=58.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHH---h--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++++|+|+.++... ..+..++. . ...+.|+++|+||+||.+.. ........+........+.+||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp ----CCEEEEEEETTCHHHH--HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred hhhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence 56789999999999987432 22333322 2 12478999999999998643 22333344444455667889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 147 ~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 147 LHHNVQALFEGVVRQIR 163 (166)
T ss_dssp GTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877653
No 76
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.36 E-value=6.5e-07 Score=78.33 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=62.1
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEee
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vS 280 (355)
....+..+|++|+|+|+.++... ..+..++ ... ..+.|+++|+||+||.... ........+...+...+|.+|
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 34567899999999999886421 2233333 221 2478999999999997632 222223333333445678899
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 018454 281 INKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~ 299 (355)
|+++.|+++|++.|.+.+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876654
No 77
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.36 E-value=6e-07 Score=76.99 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=55.2
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++... ..+..++. .. ..+.|+++|+||+||.... ....-...+.......++.+||+
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 153 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153 (183)
T ss_dssp TTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred HHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 357889999999999886431 23333332 21 2468999999999997532 11112222333334567889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 154 ~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 154 ANINVENAFFTLARDIK 170 (183)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876654
No 78
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.35 E-value=1.6e-06 Score=88.01 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHH----HHHHHHhhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK----GWLRVLSKE 271 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~----~w~~~l~~~ 271 (355)
+|| .++.......+..+|++|+|+|+.++......+....+.. .+.|.|+|+||+|+++....+ +..+.+...
T Consensus 81 PGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 81 PGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp SSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 444 3455666778899999999999998654333333333333 478889999999999754322 222333222
Q ss_pred --C-CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 272 --Y-PSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 272 --~-p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+ ...++.+||.++.|+++|++.|.+.++.
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 1 3457889999999999999999887653
No 79
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.35 E-value=6.5e-07 Score=76.82 Aligned_cols=94 Identities=11% Similarity=-0.054 Sum_probs=61.4
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeec
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~ 282 (355)
....+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.+.... ..-...+.......++.+||+
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 155 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCC
Confidence 4457889999999999988643211 112222222 2257899999999999653211 111122333345667889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|++++++.|.+.+.
T Consensus 156 ~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 156 TGENVEEAFVQCARKIL 172 (186)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876654
No 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.35 E-value=8e-07 Score=74.43 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhC-CceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEY-PSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~-p~~~f~vSa~~ 283 (355)
.+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||..... .......+...+ ...++.+||++
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 4567999999999988642211 122222222 135799999999999975321 122223333333 45678899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987654
No 81
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.35 E-value=6.9e-07 Score=78.56 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=60.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||.+....... ...+.....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS 172 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC
Confidence 5788999999999987643211 2233444433357999999999999875321111 111222223
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
. .++.+||+++.|+++|++.|.+.+
T Consensus 173 ~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 173 AFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3 577899999999999999887654
No 82
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.35 E-value=1.2e-06 Score=76.68 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=60.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhh--------HHHHHHHHhh----hCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWA--------TKGWLRVLSK----EYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~--------~~~w~~~l~~----~~p 273 (355)
.+..+|++|+|+|+.++.......+..++.. ...+.|+++|+||+||++... .......+.. ...
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 5678999999999998732233444455543 235889999999999987431 1112233333 344
Q ss_pred ceEEEeeecCCCChHHHHHHHHHH
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
...+.+||++ .|++++++.|.+.
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHH
T ss_pred cceEEEEech-hhHHHHHHHHHHH
Confidence 5677899999 9999999887653
No 83
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.35 E-value=6.4e-07 Score=76.16 Aligned_cols=91 Identities=14% Similarity=-0.026 Sum_probs=58.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh---cCCCc-EEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKH-MILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~---~~~k~-vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++..... ..+...+... ..+.| +++|+||+||.... ........+........+.+||+
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAK 155 (178)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCC
Confidence 5788999999999988653211 1222222221 12566 78999999997532 11222223333334567889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|++++++.|.+.+.
T Consensus 156 ~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 156 TGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877653
No 84
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.35 E-value=8.7e-07 Score=74.94 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=58.7
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+... .......+...+....+.+||++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL 152 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTT
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCC
Confidence 35678999999999987643211 1222223321 23789999999999976321 11122223333345678899999
Q ss_pred CCChHHHHHHHHHHHh
Q 018454 284 SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~ 299 (355)
|.|+++|++.|.+.+.
T Consensus 153 g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 153 QHNVAELFEGVVRQLR 168 (175)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999877654
No 85
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.35 E-value=9.3e-07 Score=77.96 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=60.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCc-eEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPS-LAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~-~~f~vSa~~ 283 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|++||+||+||.... ....-...+...... ..+.+||++
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 176 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKD 176 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCC
Confidence 46788999999999987643211 1222223322 2578999999999997531 111112223333444 678899999
Q ss_pred CCChHHHHHHHHHHHh
Q 018454 284 SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~ 299 (355)
+.|+++|++.|.+.+.
T Consensus 177 g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 177 SSNVEEAFLRVATELI 192 (201)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999877664
No 86
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.34 E-value=2.5e-07 Score=93.87 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEeee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLFY 351 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~~ 351 (355)
+.+++|+++|.||||||||+|+|.+.....++++||+|++.+...+.+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~ 278 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH 278 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE
Confidence 457889999999999999999999998889999999998876554443
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=9.3e-07 Score=76.85 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=62.5
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
....+..+|++|+|+|+.++.... ...+...+... ..+.|+++|+||+||.... ........+.......+|.+|++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence 445678999999999998764321 12233333321 2478999999999996532 12222333333344567889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 169 ENISVRQAFERLVDAIC 185 (191)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876654
No 88
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.34 E-value=1.3e-06 Score=88.63 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=63.4
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
+.....+..+|+||+|+|+.++...... ....++.. ..++|+|+|+||+||.+...... +.+.......++.+||+
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAk 380 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISAL 380 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTT
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEEC
Confidence 3456688999999999999988754211 22233332 24799999999999987654321 22333211346788999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988775
No 89
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.34 E-value=4.1e-07 Score=80.46 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+++|+||+||.+....... ...+.....
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 57889999999999986533221 233344443358999999999999764321111 112222233
Q ss_pred -ceEEEeeecCCCChHHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQF 297 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q~ 297 (355)
..++.+||+++.|+++|++.|.+.
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 347889999999999999988653
No 90
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.33 E-value=4.7e-07 Score=86.12 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=69.1
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC-hhhHHHHHHHHhhhCCc-eEEEeeec
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPS-LAFHASIN 282 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~~~p~-~~f~vSa~ 282 (355)
.+...+..+|++++|+|+.+ .......+.+.+.. .+.|+|+|+||+|+.. ......+...+...++. .++.+|++
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 34567889999999999987 54444445554542 4799999999999987 45455566666655443 57889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.++
T Consensus 158 ~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999987654
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.33 E-value=4.2e-07 Score=80.22 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=61.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhh---------HHHHHHHHhhhCC-ceE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA---------TKGWLRVLSKEYP-SLA 276 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~---------~~~w~~~l~~~~p-~~~ 276 (355)
.+..+|++|+|+|+.++..... ..+...+....++.|+++|+||+||..... .......+..... ...
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 5788999999999988653221 123333433335799999999999975432 1222223333333 357
Q ss_pred EEeeecCCCChHHHHHHHHHHHhh
Q 018454 277 FHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
|.+||+++.|++++++.|.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999988776643
No 92
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.33 E-value=9.4e-07 Score=76.82 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=59.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.... ........+.......++.+||+++.
T Consensus 90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC 169 (191)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5678999999999987642211 122222322 12478999999999996532 11222233333344567889999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|++++++.|.+.+.
T Consensus 170 gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 170 NVEEAFINTAKEIY 183 (191)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998866543
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.32 E-value=7.8e-07 Score=77.04 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hCCceEEE
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~p~~~f~ 278 (355)
..+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||..........+.+.. ......+.
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 466889999999999886432 222233322 1257899999999999765333333333321 12345778
Q ss_pred eeecCCCChHHHHHHHHHHH
Q 018454 279 ASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
+||+++.|++++++.|.+.+
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987654
No 94
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.32 E-value=2e-06 Score=79.49 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=58.0
Q ss_pred hcCCCEEEEEecCCCCC-CCcchHHHHHHH---h--hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454 210 IDSSDVVVQVLDARDPQ-GTRCHHLERHLK---E--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 210 i~~sDvVL~VvDardp~-~s~~~~l~~~L~---~--~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+..+|++|+|+|+.++. .+. ..+..++. . ...+.|+|+|+||+||.....................+.+||++
T Consensus 160 ~~~ad~vilV~D~t~~~~~s~-~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 160 KLLVDGFLLGIDVSRGMNRNF-DDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARS 238 (255)
T ss_dssp EEECCEEEEEEECBC----CH-HHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTT
T ss_pred cccCCEEEEEEECCCCchhhH-HHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 34799999999999871 222 23333332 1 12578999999999997654443333333222345577899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887654
No 95
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.32 E-value=7.9e-07 Score=79.20 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=59.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+|+|+||+||.+....... ...+.....
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 56789999999999876432111 233333333357899999999999865322111 122333334
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHHh
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
. ..+.+||+++.|+++|++.|.+.+.
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3 6788999999999999998876653
No 96
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.32 E-value=7.3e-07 Score=77.83 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=61.1
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhC-CceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEY-PSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~-p~~~f~vSa~ 282 (355)
...+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... .......+.... ....+.+||+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 345678999999999988653222 1222333322 24789999999999975321 222233343332 4567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887654
No 97
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.32 E-value=1.1e-06 Score=77.19 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=61.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|++|+|+|+.++... ..+..++ .. ...+.|+++|+||+||.... ........+.......++.+||++
T Consensus 77 ~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD 154 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred hccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 57889999999999886432 2232333 22 12468999999999997632 122223333333445678899999
Q ss_pred CCChHHHHHHHHHHHhh
Q 018454 284 SFGKGSLLSVLRQFARL 300 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~ 300 (355)
+.|+++|++.|.+.+..
T Consensus 155 g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 155 STNVEDAFLTMARQIKE 171 (206)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998776653
No 98
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=8.1e-07 Score=78.49 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=60.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHH-------------HHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR-------------VLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~-------------~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+....++.|+++|+||+||.+......+.. .+.....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 5788999999999987642211 223344443335899999999999976532222211 1112222
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
. .++.+||+++.|+++|++.|.+.+
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 577899999999999999987765
No 99
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=9.6e-07 Score=76.95 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHHH---hh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++... ..+..++. .. ..+.|+++|+||+||.+.. ....-...+.......++.+||+
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSF--YTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK 168 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred HhhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 356789999999999886432 22333332 21 2478999999999997522 11222233333445667889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 169 ~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 169 NAINIEELFQGISRQI 184 (192)
T ss_dssp TTBSHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999987655
No 100
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.31 E-value=8.1e-07 Score=75.80 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=59.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhc--CCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~--~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++..... ..+...+.... .+.|+++|+||+||.+... ...... +...+...++.+|++
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~ 163 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWNVNYVETSAK 163 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HHHHcCCeEEEeCCC
Confidence 35678999999999987643111 11212222221 3789999999999975321 122222 223345567889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 164 TRANVDKVFFDLMREIR 180 (187)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876653
No 101
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.31 E-value=7.2e-07 Score=74.49 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=58.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|.+|+|+|+.++..... ..+...+... ..+.|+++|+||+|+..... .+.... +.......++.+|++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RADQWNVNYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HHHHHTCEEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HHHHcCCeEEEeCCC
Confidence 35678999999999987643211 1122222221 13789999999999975321 122222 222234567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|++++++.|.+..
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 102
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.31 E-value=8.4e-07 Score=74.67 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=59.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|++|+|+|+.++... ..+..++ .. ...+.|+++|+||+||.+.. ........+........+.+||++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ 152 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCC
Confidence 56789999999999876421 2233332 22 12468999999999997532 111222333333445678899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 153 NKGIEELFLDLCKRM 167 (170)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987654
No 103
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.31 E-value=1.7e-06 Score=73.46 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=59.4
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-----cCCCcEEEEEeccCCCChh--hHHHHHHHHhh-hCCceEE
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-----CKHKHMILLLNKCDLVPAW--ATKGWLRVLSK-EYPSLAF 277 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-----~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~-~~p~~~f 277 (355)
...+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+.. ........+.. .....++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF 155 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEE
Confidence 346788999999999988643211 1122222221 1578999999999996432 11222223333 3345678
Q ss_pred EeeecCCCChHHHHHHHHHHH
Q 018454 278 HASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.+|++++.|+++|++.|.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 156 LTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 899999999999999887654
No 104
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=76.25 Aligned_cols=89 Identities=18% Similarity=0.083 Sum_probs=60.0
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++... ..+..++ .. ...+.|+++|+||+||.... ........+.......++.+||+
T Consensus 93 ~~~~~~d~vi~v~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (193)
T 2oil_A 93 AYYRGAVGALLVFDLTKHQTY--AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL 170 (193)
T ss_dssp HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 356789999999999886432 1222333 22 12468999999999997532 11222333333345567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 018454 283 KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~ 298 (355)
++.|+++|++.|.+.+
T Consensus 171 ~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 171 DSTNVELAFETVLKEI 186 (193)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887654
No 105
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.30 E-value=1e-06 Score=74.59 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=58.4
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
..+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||..... ...... +.......++.+|+++
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~ 160 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKA 160 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHH-HHHHHTCEEEEEBTTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHH-HHHHcCCeEEEEeCCC
Confidence 35678999999999987643211 112222222 224789999999999975322 122222 2222345678899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+.+
T Consensus 161 ~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 161 GYNVKQLFRRVAAAL 175 (179)
T ss_dssp TBSHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987654
No 106
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.29 E-value=8.5e-07 Score=75.27 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=60.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH----Hh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL----KE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L----~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++... ..+..++ .. ...+.|+++|+||+||.+.. ........+.......++.+|++
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK 154 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred HHhhCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 45679999999999876422 1222222 21 12578999999999997632 21222333434445567889999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 018454 283 KSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~ 300 (355)
++.|+++|++.|.+.+..
T Consensus 155 ~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998776643
No 107
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.29 E-value=1.1e-06 Score=76.21 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=59.5
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
...+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+|+.... ........+...+...++.+|++
T Consensus 88 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 167 (189)
T 1z06_A 88 QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167 (189)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSS
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCC
Confidence 345788999999999987643211 1222222221 3578999999999996542 22333344444455567889999
Q ss_pred CC---CChHHHHHHHHHHH
Q 018454 283 KS---FGKGSLLSVLRQFA 298 (355)
Q Consensus 283 ~~---~Gi~~Ll~~L~q~~ 298 (355)
++ .|++++++.|.+.+
T Consensus 168 ~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 168 NPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp SGGGGSCHHHHHHHHC---
T ss_pred cCCcccCHHHHHHHHHHHH
Confidence 99 99999988876543
No 108
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.29 E-value=8e-07 Score=78.34 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=57.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh------------
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------------ 271 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~------------ 271 (355)
.+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||......++..+.+...
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERL--LESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK 166 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccc
Confidence 56789999999999886422 223333322 12578999999999997522222333333211
Q ss_pred ----CCceEEEeeecCCCChHHHHHHHHH
Q 018454 272 ----YPSLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 272 ----~p~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
....++.+||+++.|++++++.|.+
T Consensus 167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 2345788999999999999998864
No 109
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.29 E-value=6.8e-07 Score=78.13 Aligned_cols=86 Identities=22% Similarity=0.182 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-----------C
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-----------Y 272 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-----------~ 272 (355)
.+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||......++..+.+... .
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERF--DEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSC
T ss_pred HHhcCCEEEEEEECCChHHH--HHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccc
Confidence 56789999999999987532 222222221 12578999999999997632233344443321 2
Q ss_pred CceEEEeeecCCCChHHHHHHHHH
Q 018454 273 PSLAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 273 p~~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
....+.+||+++.|++++++.|.+
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHh
Confidence 345788999999999999998864
No 110
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=6.3e-07 Score=75.31 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=59.4
Q ss_pred hhcCCCEEEEEecCCCCCCCc-chHHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~-~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|++|+|+|+.++.... ...+...+... ..+.|+++|+||+||.+... .......+.......++.+|+++
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 150 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKL 150 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCC
Confidence 456799999999998764321 12222333321 14789999999999975422 12222333333445678899999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+..
T Consensus 151 ~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 151 NHNVKELFQELLNLE 165 (172)
T ss_dssp TBSHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999988765
No 111
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.29 E-value=1.4e-07 Score=95.87 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=39.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
.+++|++||.||||||||||+|.+.....++++||||++.+...+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~ 287 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIV 287 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEe
Confidence 4589999999999999999999999888999999999765544443
No 112
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.28 E-value=7e-07 Score=78.27 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=58.9
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCCh-------hhHHHHHHHHhhhCCceEE
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPA-------WATKGWLRVLSKEYPSLAF 277 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~-------~~~~~w~~~l~~~~p~~~f 277 (355)
...+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||... .........+.......++
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 345678999999999987643221 1222223321 247899999999999632 1112233333333445678
Q ss_pred EeeecCCCChHHHHHHHHHHH
Q 018454 278 HASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.+||+++.|++++++.|.+.+
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999887654
No 113
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.27 E-value=1.2e-06 Score=76.28 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=58.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCC---hhhHHHHHHHHhhhCC-ceEEEeee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVP---AWATKGWLRVLSKEYP-SLAFHASI 281 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp---~~~~~~w~~~l~~~~p-~~~f~vSa 281 (355)
.+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.. ..........+...+. ...+.+||
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 4567999999999998653221 2222333321 14689999999999942 1111222223333333 56788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|++++++.|.+.+.
T Consensus 162 ~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp TTTBTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876543
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.26 E-value=8.2e-07 Score=75.61 Aligned_cols=84 Identities=25% Similarity=0.243 Sum_probs=54.8
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
..+|++++|+|+.++. ....+...+.+ .+.|+|+|+||+|+..........+.+...+....+.+||+++.|+++|
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 4799999999998642 11222223332 4799999999999864321111112232223345678999999999999
Q ss_pred HHHHHHHH
Q 018454 291 LSVLRQFA 298 (355)
Q Consensus 291 l~~L~q~~ 298 (355)
++.|.+.+
T Consensus 156 ~~~l~~~~ 163 (165)
T 2wji_A 156 KKAISIAV 163 (165)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99887654
No 115
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.25 E-value=4.5e-06 Score=82.44 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=68.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~ 270 (355)
+|| .++.......+..+|++|+|+|+.++. .....+....+.. ....|+|+|+||+|+++... .+++.+++..
T Consensus 91 PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 91 PGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG 168 (410)
T ss_dssp SSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 455 345566677888999999999999864 2212222222222 23468999999999987542 2333344433
Q ss_pred h--CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 271 E--YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~--~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
. ....++.+|++++.|+++|++.|.+.++.
T Consensus 169 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 169 TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 1 23457889999999999999999887653
No 116
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.23 E-value=8.3e-07 Score=74.01 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
.+..+|.+++|+|+.++..... ..+...+.. ...+.|+++|+||+|+.+... .......+.......++.+|++++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 150 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSK 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCH
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCC
Confidence 5678899999999987643211 111122222 124789999999999975322 122223333333445788899999
Q ss_pred CChHHHHHHHHHHH
Q 018454 285 FGKGSLLSVLRQFA 298 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~ 298 (355)
.|+++|++.|.+.+
T Consensus 151 ~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 151 TMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999987665
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.22 E-value=4.6e-07 Score=84.31 Aligned_cols=83 Identities=20% Similarity=0.146 Sum_probs=60.4
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
..+|+||+|+|+.++ .....+..++.+ .+.|+++|+||+|+............+.......++.+||+++.|+++|
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 889999999999874 223344444443 4799999999999976543222233344444566888999999999999
Q ss_pred HHHHHHH
Q 018454 291 LSVLRQF 297 (355)
Q Consensus 291 l~~L~q~ 297 (355)
++.|.+.
T Consensus 158 ~~~i~~~ 164 (256)
T 3iby_A 158 QQSLLHC 164 (256)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9998765
No 118
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.22 E-value=1.7e-06 Score=73.78 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHH---HHHhh----cCCCcEEEEEeccCCCC---hhhHHHHHHHHhhh-CCceEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKEH----CKHKHMILLLNKCDLVP---AWATKGWLRVLSKE-YPSLAF 277 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~---~L~~~----~~~k~vILVlNK~DLvp---~~~~~~w~~~l~~~-~p~~~f 277 (355)
.+..+|++|+|+|+.++... ..+.. ++... ..+.|+++|+||+||.. ......-...+... .....|
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSF--QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred HHHhCCEEEEEEECcCHHHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 45679999999999987532 22333 33321 14789999999999942 11111111222222 235577
Q ss_pred EeeecCCCChHHHHHHHHHHH
Q 018454 278 HASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.+||+++.|++++++.|.+.+
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHH
Confidence 899999999999999887654
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.4e-06 Score=77.88 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhh-cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~-~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|++|+|+|+.++... ..+..++ ... ..+.|++||+||+||.... ........+.......++.+||++
T Consensus 82 ~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 159 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALN 159 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-
T ss_pred HhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 57789999999999886432 2232333 221 2478999999999997532 111222333333455677899999
Q ss_pred CCChHHHHHHHHHHHhhh
Q 018454 284 SFGKGSLLSVLRQFARLK 301 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~~ 301 (355)
+.|+++|++.|.+.+...
T Consensus 160 ~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 160 SENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999988776543
No 120
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.8e-06 Score=75.33 Aligned_cols=92 Identities=21% Similarity=0.120 Sum_probs=60.1
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecC
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
..+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||.... ........+...+....|.+||++
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACT 173 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCc
Confidence 35677899999999988643211 122222322 12578999999999997532 112222233333345678899999
Q ss_pred CC-ChHHHHHHHHHHHh
Q 018454 284 SF-GKGSLLSVLRQFAR 299 (355)
Q Consensus 284 ~~-Gi~~Ll~~L~q~~~ 299 (355)
+. |++++++.|.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 174 GEGNITEIFYELCREVR 190 (196)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99 99999998876553
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.21 E-value=3.4e-07 Score=85.77 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+.....+|++|+|+|+.++. ....+...+.+ .+.|+|+|+||+|+..........+.+.+.....++.+||++|.
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHH--HHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred HHHhhcCCCEEEEEecCCChH--HHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 344568999999999998742 23334444444 47999999999998754322222233444444567889999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|+++|++.|.+.+.
T Consensus 155 gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 155 GIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999876653
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.21 E-value=2e-06 Score=74.92 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=58.8
Q ss_pred hhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeec
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
..+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||.+... ...... +...+...+|.+||+
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHHTCEEEEECTT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HHHHhCCeEEEEeCC
Confidence 35677999999999987642111 1122222222 23789999999999975321 122222 222234567889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 160 ~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 160 TRANVDKVFFDLMREIR 176 (206)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876654
No 123
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.21 E-value=4.4e-06 Score=82.53 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-CCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh----HHHHHHHHhh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSK 270 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~----~~~w~~~l~~ 270 (355)
+|| .++.......+..+|++|+|+|+.++. .....+....+.. ...+|+|+|+||+||++... .++..+.+..
T Consensus 89 PGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~ 166 (408)
T 1s0u_A 89 PGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG 166 (408)
T ss_dssp SSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred CCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 455 344556667788899999999999864 2111111122222 23458999999999987432 2333444433
Q ss_pred h--CCceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 271 E--YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 271 ~--~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
. ....++.+||+++.|+++|++.|.+.++.
T Consensus 167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 167 TIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 1 13457889999999999999999886653
No 124
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.20 E-value=1.9e-06 Score=76.53 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=60.7
Q ss_pred HHhhhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 206 l~kvi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
....+..+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... ...-...+.......+|.+||+
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 171 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 171 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3456789999999999987643211 1222223221 24688999999999974321 1111222323334557889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|+++|++.|.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLI 188 (201)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876654
No 125
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.19 E-value=3.2e-06 Score=81.33 Aligned_cols=92 Identities=17% Similarity=0.111 Sum_probs=63.4
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcc--hHHHHHHHh-hcCCCcEEEEEeccCCCChhhHHHHHHHHhhhC----CceEEEe
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA 279 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~--~~l~~~L~~-~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~----p~~~f~v 279 (355)
...+..+|++|+|+|+.++..... ..+...+.. ...+.|+|||+||+||........+...+.... ...+|.+
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~v 306 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 306 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEE
Confidence 345778999999999988654211 122222222 124789999999999987544445555544322 3457789
Q ss_pred eecCCCChHHHHHHHHHHH
Q 018454 280 SINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~ 298 (355)
||+++.|+++|++.|.+.+
T Consensus 307 SAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 307 CATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999987765
No 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.18 E-value=1.1e-06 Score=78.38 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=60.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCCh
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi 287 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+++|+||+||........... +........|.+|++++.|+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCC-HHHHHTCEEEECBGGGTBTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHH-HHHHcCCEEEEEeCCCCCCH
Confidence 5668999999999998643211 122233333335789999999999976433221111 11222356788999999999
Q ss_pred HHHHHHHHHHHh
Q 018454 288 GSLLSVLRQFAR 299 (355)
Q Consensus 288 ~~Ll~~L~q~~~ 299 (355)
++|++.|.+.+.
T Consensus 163 ~~l~~~l~~~l~ 174 (221)
T 3gj0_A 163 EKPFLWLARKLI 174 (221)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.18 E-value=9.1e-06 Score=78.78 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcch---HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~---~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
....+|.+|+|+|+.++.+.... .+...+.....++|+|+|+||+|+............+.. ....++.+||++|.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~iSA~~g~ 321 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKE-KGLNPIKISALKGT 321 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHH-TTCCCEECBTTTTB
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHh-cCCCeEEEeCCCCc
Confidence 34569999999999876532222 233333332237999999999999886544444443332 33446788999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|+++|++.|.+.+.
T Consensus 322 gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 322 GIDLVKEEIIKTLR 335 (357)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887764
No 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.17 E-value=3.5e-06 Score=74.02 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=59.9
Q ss_pred hhhcCCCEEEEEecCCCCCCCcchHHHHHH---Hh-hcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeee
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE-HCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASI 281 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~~l~~~L---~~-~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa 281 (355)
..+..+|++|+|+|+.++... ..+..++ .. ...+.|+++|+||+||..... .... ..+........+.+||
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~~~~~~SA 169 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETY--NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENELMFLETSA 169 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEEECT
T ss_pred HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcCCEEEEEeC
Confidence 357889999999999886432 2223333 22 224789999999999965321 1222 2223334556788999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|++++++.|.+.+.
T Consensus 170 ~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 170 LTGENVEEAFLKCARTIL 187 (200)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876553
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.17 E-value=1.5e-06 Score=86.98 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
+.+...+..+|++|+|+|+ ........+...+.+ .+.|+|+|+||+|+...... ...+.+...+...++.+||++
T Consensus 105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCC
Confidence 3455678899999999999 233334445555554 47999999999999865433 344555555555677889999
Q ss_pred CCChHHHHHHHHHHHh
Q 018454 284 SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~ 299 (355)
+.|+++|++.|.+.++
T Consensus 180 g~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 180 KKGFDDIGKTISEILP 195 (423)
T ss_dssp TTSTTTHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999998874
No 130
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.16 E-value=1.1e-06 Score=76.03 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+....++.|+++|+||+||.+.. ....-...+...+.
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 5678999999999988643221 12233343333578999999999997421 11111122222222
Q ss_pred -ceEEEeeec-CCCChHHHHHHHHHHH
Q 018454 274 -SLAFHASIN-KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 -~~~f~vSa~-~~~Gi~~Ll~~L~q~~ 298 (355)
...+.+||+ ++.|+++|++.|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 457789998 6899999999887654
No 131
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.46 E-value=2.5e-07 Score=81.39 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHH-------------HHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w-------------~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+.....+.|+++|+||+||.+......+ ...+.....
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 56789999999999887543321 233333332237899999999999764311111 111112222
Q ss_pred c-eEEEeeecCCCChHHHHHHHHH
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q 296 (355)
. .++.+||+++.|+++|++.|.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 2 4567899999999999988764
No 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.16 E-value=2.3e-06 Score=79.54 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=60.1
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
..+|+||+|+|+.++. ....+...+.+ .+.|+++|+||+|+............+...+...++.+||+++.|+++|
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL 157 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHH
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHH
Confidence 6899999999998753 22233333433 4799999999999865432211233344444556788999999999999
Q ss_pred HHHHHHHHh
Q 018454 291 LSVLRQFAR 299 (355)
Q Consensus 291 l~~L~q~~~ 299 (355)
++.|.+...
T Consensus 158 ~~~i~~~~~ 166 (258)
T 3a1s_A 158 KEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988764
No 133
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.16 E-value=1.4e-05 Score=68.51 Aligned_cols=96 Identities=15% Similarity=0.047 Sum_probs=60.6
Q ss_pred HHHHHhh-hcCCCEEEEEecCCCCCCC-----------cchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHH
Q 018454 203 WGELYKV-IDSSDVVVQVLDARDPQGT-----------RCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVL 268 (355)
Q Consensus 203 ~~el~kv-i~~sDvVL~VvDardp~~s-----------~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l 268 (355)
+...+.. .+.+++++.|+|+..+... .+..+...+.. .+.|+++|+||+|+.... ....+.+.+
T Consensus 72 ~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 149 (190)
T 2cxx_A 72 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKF 149 (190)
T ss_dssp HHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHHHHh
Confidence 3333444 7778899999987542110 01112233332 579999999999998743 233444444
Q ss_pred hhhC---CceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 269 SKEY---PSLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 269 ~~~~---p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
...+ ...++.+||+++.|++++++.|.+.+..
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 3211 1236889999999999999999877653
No 134
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.15 E-value=4.9e-06 Score=73.39 Aligned_cols=89 Identities=19% Similarity=0.095 Sum_probs=53.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc---hHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHHHH----Hh---------
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC---HHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRV----LS--------- 269 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~---~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~~~----l~--------- 269 (355)
.+..+|++|+|+|+.++..... ..+...+.. ...+.|+++|+||+||..........+. +.
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 154 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAA 154 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhc
Confidence 4788999999999987321111 112222221 1246899999999999864322222222 11
Q ss_pred ----------h-------------hC--CceEEEeeecCC------CChHHHHHHHHHH
Q 018454 270 ----------K-------------EY--PSLAFHASINKS------FGKGSLLSVLRQF 297 (355)
Q Consensus 270 ----------~-------------~~--p~~~f~vSa~~~------~Gi~~Ll~~L~q~ 297 (355)
+ .. ....+.+||+++ .|++++++.|.+.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 155 PSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1 01 344678999999 9999999988754
No 135
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.15 E-value=4.5e-06 Score=73.35 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhhc--CCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~~--~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++... ..+..++ .... .+.|+|+|+||+||.... ....-...+...+....+.+||+
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred hhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 35679999999999876432 1223333 2211 478999999999997532 11112223333344567889999
Q ss_pred CCCChHHHHHHHHHHHh
Q 018454 283 KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~ 299 (355)
++.|++++++.|.+.+.
T Consensus 171 ~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIR 187 (195)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876654
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.15 E-value=3.1e-06 Score=82.26 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=64.2
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCc-ch---HHHHHHHhh---cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTR-CH---HLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~-~~---~l~~~L~~~---~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p 273 (355)
+..+.++.++.+|++|+|+|+.++.+.. .. .+...|... ..++|+++|+||+|+..... .+.+.+.+...
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~-- 303 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD-- 303 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC--
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC--
Confidence 3345566788899999999997642111 11 223333331 14799999999999987532 23333333211
Q ss_pred ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 274 SLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
..+|.+||+++.|+++|++.|.+.+..
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 345678999999999999999887753
No 137
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.14 E-value=1.4e-06 Score=76.47 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=60.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeec
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+..+|++|+|+|+.++... ..+..++.. ...+.|+++|+||+||.+... .......+........|.+||+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 169 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence 57789999999999876422 223333322 124689999999999975432 1222233333344567889999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 018454 283 KSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~ 300 (355)
++.|++++++.|.+.+..
T Consensus 170 ~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999998876653
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.13 E-value=2.6e-06 Score=85.83 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----CCceEE
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAF 277 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~p~~~f 277 (355)
...+..+|+||+|+|+.++... ..+..++.. ...++|+|||+||+||............+... ....++
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRI--DEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEE
T ss_pred HHHhccCCEEEEEEECcchhHH--HHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEE
Confidence 4578899999999999986422 222223222 12479999999999997643333333333221 123477
Q ss_pred EeeecCCCChHHHHHHHHHHHh
Q 018454 278 HASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+||++|.|+++|++.|.+.+.
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987764
No 139
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.11 E-value=1.4e-06 Score=77.39 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcc--hHHHHHHHhhcCCCcEEEEEeccCCCChh-------------hHHHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~--~~l~~~L~~~~~~k~vILVlNK~DLvp~~-------------~~~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++..... ..+...+.....+.|+|+|+||+||.+.. ....-...+...+.
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 5678999999999988643221 12333344333578999999999997421 11111222332223
Q ss_pred -ceEEEeeec-CCCChHHHHHHHHHHH
Q 018454 274 -SLAFHASIN-KSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 -~~~f~vSa~-~~~Gi~~Ll~~L~q~~ 298 (355)
...+.+||+ ++.|+++|++.|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 457789998 6899999999887654
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.11 E-value=2.2e-06 Score=86.57 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=62.9
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CCceEEEeeec
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YPSLAFHASIN 282 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p~~~f~vSa~ 282 (355)
+.....+..+|+||+|+|+.++.......+.+.+ .++|+|+|+||+||.+..... .+... ....++.+|++
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l----~~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAk 366 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAA 366 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHH----TTSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTT
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc----cCCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECC
Confidence 4456678999999999999998765544444444 358999999999998764322 11111 12346788999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 018454 283 KSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~ 300 (355)
++.|+++|++.|.+.+..
T Consensus 367 tg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TTBSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999887753
No 141
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.11 E-value=2e-06 Score=80.85 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcch--HHHHHHHhhcCCCcEEEEEeccCCCChhhH-------------HHHHHHHhhhCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~--~l~~~L~~~~~~k~vILVlNK~DLvp~~~~-------------~~w~~~l~~~~p 273 (355)
.+..+|++|+|+|+.++...... .+...+.....++|+++|+||+||.+.... ......+.....
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 57889999999999886532221 233344433347999999999999653211 111122222233
Q ss_pred c-eEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 S-LAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 ~-~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
. .+|.+||+++.|+++|++.|.+.+
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3 678899999999999999887654
No 142
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.09 E-value=8.1e-06 Score=83.77 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=41.1
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
..+...+..+|.+|+|+|+.++.......+...+.. .++|+|+|+||+|+..
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDT 148 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCC
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCcc
Confidence 456678899999999999998776555555555544 5799999999999964
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.09 E-value=6.5e-06 Score=85.74 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=65.8
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCC---ceEEEee
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP---SLAFHAS 280 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p---~~~f~vS 280 (355)
.++...+..+|.+|+|+|+.++.............. .+.|+|+|+||+|+.... .....+.+...+. ..++.+|
T Consensus 88 ~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~vi~vS 164 (600)
T 2ywe_A 88 YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEEAILAS 164 (600)
T ss_dssp HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGGCEECB
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCcccEEEEE
Confidence 345567889999999999998764433222222222 579999999999997543 2233344444332 2478899
Q ss_pred ecCCCChHHHHHHHHHHHhh
Q 018454 281 INKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q~~~~ 300 (355)
|++|.|+++|++.|.+.++.
T Consensus 165 Aktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 165 AKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp TTTTBSHHHHHHHHHHHSCC
T ss_pred eecCCCchHHHHHHHHhccc
Confidence 99999999999999888764
No 144
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.06 E-value=3.1e-06 Score=78.63 Aligned_cols=89 Identities=26% Similarity=0.296 Sum_probs=61.5
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCC-CcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
+-....+|+||+|+|+.++. ....+...+.. .+ .|+++|+||+|+.+..........+.......++.+|++++.
T Consensus 76 ~~~~~~~d~vi~v~D~~~~~--~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCLM--RNLFLTLELFE--MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHH--TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTB
T ss_pred hhhccCCcEEEEEecCCcch--hhHHHHHHHHh--cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 33457899999999998752 22222222332 34 999999999998754322222344444445567889999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|+++|++.|.+...
T Consensus 152 gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 152 GVEELKRMIALMAE 165 (271)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988765
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.06 E-value=1.5e-05 Score=79.81 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCC-------CcchHHHHHHHhhcCCCc-EEEEEeccCCCCh----hhHH----HH
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MILLLNKCDLVPA----WATK----GW 264 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~-------s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~----~~~~----~w 264 (355)
++.......+..+|++|+|+|+.+... .........+.. .+.| +|+|+||+||... ...+ +.
T Consensus 107 ~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~ 184 (439)
T 3j2k_7 107 SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSNERYEECKEKL 184 (439)
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHHHHHHHHHHHH
Confidence 445556667889999999999998753 112222222222 3566 8999999999642 1111 22
Q ss_pred HHHHhhh-C----CceEEEeeecCCCChHHHHH
Q 018454 265 LRVLSKE-Y----PSLAFHASINKSFGKGSLLS 292 (355)
Q Consensus 265 ~~~l~~~-~----p~~~f~vSa~~~~Gi~~Ll~ 292 (355)
...+... + ...++.+||++|.|+.++.+
T Consensus 185 ~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 185 VPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2222221 1 23477899999999998443
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.05 E-value=5.5e-07 Score=91.00 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=36.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWF 344 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~ 344 (355)
+.+++|+++|.||||||||+|+|.+.....++++||+|++.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~ 262 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV 262 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE
Confidence 35788999999999999999999998888899999998554
No 147
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.05 E-value=5.7e-06 Score=76.57 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=35.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFY 345 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y 345 (355)
.+.++|+++|.+|||||||||+|++.....+++.+|+|...+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~ 75 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeE
Confidence 357899999999999999999999999888999999884433
No 148
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.03 E-value=8.7e-06 Score=73.76 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
.+..+|++|+|.|..++.+... ..+...+.. ...+.|+|||.||+||.... +...-...+...+....|.+||++|.
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGY 161 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCc
Confidence 5678999999999988654322 122222222 23578999999999996532 12222233333444556789999999
Q ss_pred ChHHHHHHHHHHH
Q 018454 286 GKGSLLSVLRQFA 298 (355)
Q Consensus 286 Gi~~Ll~~L~q~~ 298 (355)
|++++++.|.+.+
T Consensus 162 nV~e~F~~i~~~i 174 (216)
T 4dkx_A 162 NVKQLFRRVAAAL 174 (216)
T ss_dssp SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887654
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.02 E-value=4.2e-06 Score=72.76 Aligned_cols=88 Identities=18% Similarity=0.080 Sum_probs=57.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHH---Hhh----cCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L---~~~----~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vS 280 (355)
.+..+|++|+|+|+.++... ..+..++ ... ..+.|+|+|+||+||.... ....-...+........+.+|
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSF--DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 56789999999999876432 2222232 221 1579999999999996421 111112222223345678899
Q ss_pred e-cCCCChHHHHHHHHHHH
Q 018454 281 I-NKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 281 a-~~~~Gi~~Ll~~L~q~~ 298 (355)
| +++.|+++|++.|.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHH
Confidence 9 89999999999887654
No 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.02 E-value=6.5e-06 Score=71.22 Aligned_cols=90 Identities=10% Similarity=0.030 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhCCce----EE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEYPSL----AF 277 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~p~~----~f 277 (355)
.+..+|++++|+|+.++..+. ..+..++. ....+.|+++|+||+||...... ......+....... .+
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred HccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 355689999999998864222 12333332 22357899999999999865432 22233444333332 67
Q ss_pred EeeecCCC-ChHHHHHHHHHHHh
Q 018454 278 HASINKSF-GKGSLLSVLRQFAR 299 (355)
Q Consensus 278 ~vSa~~~~-Gi~~Ll~~L~q~~~ 299 (355)
.+||+++. |+++|++.|.+.+.
T Consensus 155 ~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 155 FVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHH
T ss_pred EEecccCchhHHHHHHHHHHHHh
Confidence 88999997 99999998876654
No 151
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.00 E-value=2.6e-06 Score=84.45 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=35.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
..+..|+|||.||||||||||+|.+...+.++++|++|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~ 57 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID 57 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec
Confidence 3567899999999999999999999887789999998743
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.99 E-value=7.9e-06 Score=80.54 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=63.5
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCC-hhhHH----HHHHHHhhhC---
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVP-AWATK----GWLRVLSKEY--- 272 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp-~~~~~----~w~~~l~~~~--- 272 (355)
+.......+..+|++|+|+|+.++.......+...+.. .+.| +|+|+||+|+.. ....+ +..+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 34555667889999999999998765433334344433 4677 889999999985 22111 2222332221
Q ss_pred -CceEEEeeecCCCC------------------hHHHHHHHHHHHh
Q 018454 273 -PSLAFHASINKSFG------------------KGSLLSVLRQFAR 299 (355)
Q Consensus 273 -p~~~f~vSa~~~~G------------------i~~Ll~~L~q~~~ 299 (355)
...++.+||+++.| +.+|++.|.++++
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 14577889999887 7788888887765
No 153
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.98 E-value=4.4e-06 Score=78.47 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=56.8
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
..+|+||+|+|+.+.. ....+...+.+ .+.|+++|+||+|+........-...+.......++.+||+++.|+++|
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 5799999999998742 22233333333 5799999999999864322111122233333445788999999999999
Q ss_pred HHHHHHHH
Q 018454 291 LSVLRQFA 298 (355)
Q Consensus 291 l~~L~q~~ 298 (355)
++.|.+.+
T Consensus 155 ~~~i~~~~ 162 (272)
T 3b1v_A 155 VKKAAHTT 162 (272)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 99987654
No 154
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.98 E-value=4.3e-06 Score=71.85 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=56.6
Q ss_pred cCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHH
Q 018454 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSL 290 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~L 290 (355)
..+|++++|+|+.+.. ....+...+.. .+.|+++|+||+|+............+...+...++.+|++++.|+++|
T Consensus 84 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp HCCSEEEEEEEGGGHH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred cCCCEEEEEecchhHH--HHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHH
Confidence 4689999999987521 11222223332 5789999999999864321111122233333455788999999999999
Q ss_pred HHHHHHHHhh
Q 018454 291 LSVLRQFARL 300 (355)
Q Consensus 291 l~~L~q~~~~ 300 (355)
++.|.+.+..
T Consensus 160 ~~~i~~~~~~ 169 (188)
T 2wjg_A 160 KKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999877653
No 155
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.98 E-value=1.1e-05 Score=75.14 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc-----ccCCCCCeeE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI-----LFFPASVVWY 342 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-----~vs~iPGtT~ 342 (355)
....|+|||.||||||||||+|.+...+ .+++.|+.++
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~ 67 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ 67 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEE
Confidence 4578999999999999999999998876 6677787553
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.97 E-value=1.1e-05 Score=72.83 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=57.8
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh--hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~--~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~ 284 (355)
....+|.+|+|+|+.++..... ..+...+.. ...+.|+|||+||+||.... ........+...+....|.+||++|
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 4567899999999887643211 122222332 12478999999999996432 1111112222233455778999999
Q ss_pred CChHHHHHHHHHHHh
Q 018454 285 FGKGSLLSVLRQFAR 299 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~ 299 (355)
.|+++|++.|.+.+.
T Consensus 188 ~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 188 HNVKELFEGIVRQVR 202 (211)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998876653
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.95 E-value=1.5e-05 Score=80.52 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=51.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCC-------cchHHHHHHHhhcCCCcEEEEEeccCCCC--hhhHHHHHH----HH
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGT-------RCHHLERHLKEHCKHKHMILLLNKCDLVP--AWATKGWLR----VL 268 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s-------~~~~l~~~L~~~~~~k~vILVlNK~DLvp--~~~~~~w~~----~l 268 (355)
+.......+..+|++|+|+|+.++... .......++.. ...+|+|+|+||+||+. ....+...+ .+
T Consensus 124 f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l 202 (483)
T 3p26_A 124 FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 202 (483)
T ss_dssp GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHH
Confidence 455566678999999999999986321 11122222222 22357999999999986 222222222 22
Q ss_pred hhh-C---CceEEEeeecCCCChHH
Q 018454 269 SKE-Y---PSLAFHASINKSFGKGS 289 (355)
Q Consensus 269 ~~~-~---p~~~f~vSa~~~~Gi~~ 289 (355)
... + ...++.+||++|.|+.+
T Consensus 203 ~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 203 VDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHcCCCcccceEEEEeeecCCCccc
Confidence 211 1 24567899999999873
No 158
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.93 E-value=1.1e-06 Score=76.95 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=50.0
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHh---h-cCCCcEEEEEeccCCCChhhH-HHHHHHHhhhCCceEEEeeecC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK 283 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~-~~~k~vILVlNK~DLvp~~~~-~~w~~~l~~~~p~~~f~vSa~~ 283 (355)
.+..+|++|+|+|+.++... ..+..++.. . ..+.|+++|+||+||.+.... ..-...+...+...++.+||++
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 179 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 179 (199)
T ss_dssp --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC--
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCC
Confidence 56789999999999986432 233333322 1 236899999999999754311 1111222223334466789999
Q ss_pred CCChHHHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQFA 298 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~ 298 (355)
+.|+++|++.|.+.+
T Consensus 180 g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 180 ATNVEQSFMTMAAEI 194 (199)
T ss_dssp -HHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999886544
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.93 E-value=2.7e-05 Score=76.59 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCC-hhhH----HHHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVP-AWAT----KGWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp-~~~~----~~w~~~l~ 269 (355)
+||. ++.......+..+|++|+|+|+.+............+.. .+.| +|+|+||+|+.. .... .+..+.+.
T Consensus 74 pG~~-~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 74 PGHA-DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp SSHH-HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CChH-HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 4543 344566677899999999999998654333333333333 4677 689999999985 2211 12222333
Q ss_pred hhC----CceEEEeeecCCCC----------hHHHHHHHHHHHh
Q 018454 270 KEY----PSLAFHASINKSFG----------KGSLLSVLRQFAR 299 (355)
Q Consensus 270 ~~~----p~~~f~vSa~~~~G----------i~~Ll~~L~q~~~ 299 (355)
... ...++.+||+++.+ +.+|++.|.++++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 221 14577889998764 7788888887665
No 160
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.93 E-value=1.1e-05 Score=74.76 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=34.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
...++|.++|.+|||||||||+|.+.....+++.+|+|
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t 74 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG 74 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc
Confidence 35789999999999999999999999888899999987
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.92 E-value=2.9e-05 Score=75.95 Aligned_cols=100 Identities=19% Similarity=0.085 Sum_probs=64.4
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchH---HHHHHHhh-cCCCcEEEEEeccCCCChhhHH--HHHHHH-hhh-C
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHH---LERHLKEH-CKHKHMILLLNKCDLVPAWATK--GWLRVL-SKE-Y 272 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~---l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~--~w~~~l-~~~-~ 272 (355)
..+..+...+..+|++++|+|+.++....... +...+... ..++|+|+|+||+|+++..... .....+ ... .
T Consensus 246 e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYS 325 (364)
T ss_dssp HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcC
Confidence 34556677789999999999998774111111 23333331 2478999999999998643111 111111 111 1
Q ss_pred C-ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 273 P-SLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 273 p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+ ..++.+|++++.|+++|++.|.+.+..
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 1 235788999999999999999887653
No 162
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.92 E-value=1.3e-05 Score=77.73 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=57.7
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh----C------CceEEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y------PSLAFH 278 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~----~------p~~~f~ 278 (355)
++..+|++|+|+|+...... ..+...+ ..+|.++|+||+|+.+..........+... . ...++.
T Consensus 189 ~~~~aD~vl~V~d~~~~~~~--~~l~~~~----~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 262 (355)
T 3p32_A 189 VANMVDTFVLLTLARTGDQL--QGIKKGV----LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLT 262 (355)
T ss_dssp HHTTCSEEEEEEESSTTCTT--TTCCTTS----GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEE
T ss_pred HHHhCCEEEEEECCCCCccH--HHHHHhH----hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 46899999999997643221 1111111 246899999999998654433333333321 1 234788
Q ss_pred eeecCCCChHHHHHHHHHHHhh
Q 018454 279 ASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
+||+++.|+++|++.|.++...
T Consensus 263 iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 263 MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887753
No 163
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.91 E-value=4e-05 Score=69.87 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=60.9
Q ss_pred HHHHHhhhcCCCEEEEEecCCCCCCCcchH-HHHHH-H-hhcCCCcEEEEEeccCCCChhhH---HHHHH-------HH-
Q 018454 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHH-LERHL-K-EHCKHKHMILLLNKCDLVPAWAT---KGWLR-------VL- 268 (355)
Q Consensus 203 ~~el~kvi~~sDvVL~VvDardp~~s~~~~-l~~~L-~-~~~~~k~vILVlNK~DLvp~~~~---~~w~~-------~l- 268 (355)
...+...+.. ++||+|+|+.......... ..... . ....++|+++|+||+|+.+.... ..+.+ .+
T Consensus 129 ~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~ 207 (262)
T 1yrb_A 129 GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLK 207 (262)
T ss_dssp HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHh
Confidence 3445556677 9999999987554322211 11001 1 01136899999999999875422 22211 11
Q ss_pred -----------------hhhCC-ceEEEeeecCCCChHHHHHHHHHHHhhh
Q 018454 269 -----------------SKEYP-SLAFHASINKSFGKGSLLSVLRQFARLK 301 (355)
Q Consensus 269 -----------------~~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~~~ 301 (355)
....+ ..++.+|++++.|+++|++.|.+.++..
T Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 208 LDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 12223 2568889999999999999998877643
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.91 E-value=3.5e-05 Score=80.16 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=61.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh-------------------------HHH
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------------------TKG 263 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~-------------------------~~~ 263 (355)
.+..+|++|+|+|+.++..........++.. .+.|+|+|+||+|+.+.+. ...
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~e 167 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYE 167 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHH
Confidence 4678999999999998654434444445544 5789999999999975321 011
Q ss_pred HHHHHhhhC--------------CceEEEeeecCCCChHHHHHHHHHHHh
Q 018454 264 WLRVLSKEY--------------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 264 w~~~l~~~~--------------p~~~f~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
....+...+ .+.++.+||++|.|+++|++.|..+++
T Consensus 168 i~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 168 LVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 222232211 125678899999999999999987765
No 165
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.90 E-value=1.2e-05 Score=82.06 Aligned_cols=88 Identities=20% Similarity=0.239 Sum_probs=57.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhh--HHHHHHHHhhhCCceEEEeeecCCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~--~~~w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
.+..+|++|+|+|+.++ .....+...+.....+.|+|+|+||+|+.+... .+.....+ ......+|.+||+++.|
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-~~~~~~~~~vSA~~g~g 194 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERF-PAIENRFHRISCKNGDG 194 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHC-GGGTTCEEECCC-----
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHH-HhcCCceEEEecCcccC
Confidence 35679999999999865 333445555555445699999999999986432 22222222 22334578899999999
Q ss_pred hHHHHHHHHHHHh
Q 018454 287 KGSLLSVLRQFAR 299 (355)
Q Consensus 287 i~~Ll~~L~q~~~ 299 (355)
+++|++.|.+.+.
T Consensus 195 i~eL~~~l~~~~~ 207 (535)
T 3dpu_A 195 VESIAKSLKSAVL 207 (535)
T ss_dssp CTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987765
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.90 E-value=4.2e-05 Score=74.92 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=60.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE-EEEEe-ccCCCChhhHHH----HHHHHhhhC--C
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLN-KCDLVPAWATKG----WLRVLSKEY--P 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v-ILVlN-K~DLvp~~~~~~----w~~~l~~~~--p 273 (355)
+...+...+..+|++|+|+| .+............+.. .+.|. |+|+| |+|+ +...... ..+.+.... .
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~ 148 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQD 148 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTT
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455567789999999999 65433222233333332 46777 99999 9999 6433222 222222211 2
Q ss_pred ceEEE--eeecC---CCChHHHHHHHHHHHh
Q 018454 274 SLAFH--ASINK---SFGKGSLLSVLRQFAR 299 (355)
Q Consensus 274 ~~~f~--vSa~~---~~Gi~~Ll~~L~q~~~ 299 (355)
..++. +||++ +.|+++|++.|.++++
T Consensus 149 ~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 149 WECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred eEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 45778 99999 9999999998887765
No 167
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.89 E-value=9.8e-06 Score=72.72 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=31.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQ 347 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~ 347 (355)
....+|.|+|.+|||||||||+|.+.... +++.|++|+..++.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~ 69 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVG 69 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeee
Confidence 45689999999999999999999987754 77889988655443
No 168
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.86 E-value=5e-06 Score=85.57 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=75.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHh---hhC--CceEEEeee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLS---KEY--PSLAFHASI 281 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~---~~~--p~~~f~vSa 281 (355)
.+..+|++|+|+|+.++...........+.. .+.|+|+|+||+|+.... ........+. ..+ ...++.+||
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSA 149 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSA 149 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEEC
Confidence 5678999999999998765444444444443 578999999999997432 1111111111 111 235677899
Q ss_pred cCCCChHHHHHHHHHHHhhhc--------------------cccceEEEEeecCCCChhHHH
Q 018454 282 NKSFGKGSLLSVLRQFARLKS--------------------DKQAISVGFVGYPNVGKSSVI 323 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~~~~--------------------~~~~i~V~~vG~pNVGKSSLI 323 (355)
++|.|+++|++.|..++.... ....+..+.|+..++++++.|
T Consensus 150 ktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 150 LTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred CCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 999999999999987765311 123456688888888887754
No 169
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.86 E-value=5.2e-06 Score=82.37 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=23.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
..+.+|++||.||||||||+|+|.+... .++++|++|..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~ 58 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTID 58 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccC
Confidence 3567899999999999999999998775 88899998854
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.86 E-value=2.9e-05 Score=77.32 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=53.8
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hh----HHHHHHHHhhhC---C-
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WA----TKGWLRVLSKEY---P- 273 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~----~~~w~~~l~~~~---p- 273 (355)
......+..+|++|+|+|+.++...........+.. ..-+++|+|+||+||++. .. ...+.+.+.... .
T Consensus 119 ~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~ 197 (434)
T 1zun_B 119 RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTT 197 (434)
T ss_dssp HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSE
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccC
Confidence 334456799999999999998764333333333332 122468999999999862 21 223333333322 1
Q ss_pred ceEEEeeecCCCChHH
Q 018454 274 SLAFHASINKSFGKGS 289 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~ 289 (355)
..++.+||++|.|+.+
T Consensus 198 ~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 198 MAFVPMSALKGDNVVN 213 (434)
T ss_dssp EEEEECCTTTCTTTSS
T ss_pred ceEEEEeccCCCCccc
Confidence 4567889999999886
No 171
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.84 E-value=7.5e-06 Score=75.35 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=26.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCC-Cee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPAS-VVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iP-GtT 341 (355)
...++|++||.||||||||||+|++.....++..+ |+|
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T 57 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVT 57 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------C
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCcc
Confidence 45789999999999999999999998876655444 555
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.84 E-value=5.6e-06 Score=72.69 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=24.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWY 342 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~ 342 (355)
..+..|+++|.+|||||||||+|.+.. ...++|.+|+|.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 456789999999999999999999876 677889999983
No 173
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.84 E-value=1.2e-05 Score=69.06 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=34.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWY 342 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~ 342 (355)
...+|.++|.+|||||||||+|.+.....+++.+|+|+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~ 59 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR 59 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCcc
Confidence 45789999999999999999999988888999999883
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.84 E-value=1.9e-05 Score=83.48 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=34.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt 340 (355)
..++.|+|+|.||||||||||+|++...+.+++.|+|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 3578999999999999999999999999999999998
No 175
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.83 E-value=1.3e-05 Score=69.20 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=23.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT 341 (355)
....+|.++|.+|||||||||+|.+.. ...+++.||+|
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t 59 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKT 59 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCce
Confidence 356889999999999999999999886 67788999988
No 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.81 E-value=1.3e-05 Score=73.55 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCC-eeEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV-VWYW 343 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG-tT~~ 343 (355)
...+.|+|+|.||||||||+|+|++.....++..|+ +|+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~ 60 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKT 60 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeee
Confidence 356899999999999999999999988777776676 5543
No 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.79 E-value=3.1e-05 Score=67.74 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred hcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh--cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454 210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~-~~l~~~L~~~--~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
...+|.+|+|+|+.++.+... ..+...+... ..+.|+|+|.||+||..... .......+...+....+.+||++|.
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 345789999999887643211 1222223321 24789999999999964321 1111122323344456789999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|+++|++.|.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876553
No 178
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.78 E-value=1.7e-05 Score=73.80 Aligned_cols=85 Identities=9% Similarity=0.097 Sum_probs=47.5
Q ss_pred CCCEEEEEecCCC-CCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh---CCceEEEeeecCCCCh
Q 018454 212 SSDVVVQVLDARD-PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE---YPSLAFHASINKSFGK 287 (355)
Q Consensus 212 ~sDvVL~VvDard-p~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~---~p~~~f~vSa~~~~Gi 287 (355)
.+|++|+++|... +....+..+.+.+. .++|+|+|+||+|+++..........+.+. ....++.+|+.++.|+
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 4778888886543 55444555555554 379999999999998766554443333222 3444566799999999
Q ss_pred HHHHHHHHHHHh
Q 018454 288 GSLLSVLRQFAR 299 (355)
Q Consensus 288 ~~Ll~~L~q~~~ 299 (355)
++|.+.|.+..+
T Consensus 192 ~~l~~~l~~~~p 203 (274)
T 3t5d_A 192 NKLVKKIKDRLP 203 (274)
T ss_dssp ---CHHHHHTCS
T ss_pred HHHHHHHhcCCC
Confidence 999999887654
No 179
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.78 E-value=3e-05 Score=66.08 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=33.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.++|.++|.+|||||||||+|.+.....+.|..|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~ 53 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN 53 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc
Confidence 46799999999999999999999987777778888864
No 180
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.77 E-value=1.1e-05 Score=71.37 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=35.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC-ccccCCCCCeeEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VILFFPASVVWYW 343 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~-~~~vs~iPGtT~~ 343 (355)
...++|+++|.+|||||||||+|.+.. ...+++.||+|+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~ 67 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH 67 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccc
Confidence 346789999999999999999999987 5789999999844
No 181
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.75 E-value=1.8e-05 Score=72.60 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhc---CCCcEEEEEe-ccCCCChhhHHH------------HH
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC---KHKHMILLLN-KCDLVPAWATKG------------WL 265 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~---~~k~vILVlN-K~DLvp~~~~~~------------w~ 265 (355)
+.+.+...+..+|++|+|+|+.+ .......+.+.+.+.. ...|.|+|+| |+|+.... ... +.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHH
Confidence 34455557789999999999986 3333334444454321 1468888888 99998542 222 22
Q ss_pred HHHhhhCC-ceEEEeeecCCCChHHHHHHHHHHHhh
Q 018454 266 RVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 266 ~~l~~~~p-~~~f~vSa~~~~Gi~~Ll~~L~q~~~~ 300 (355)
..+...+. ...+.+||+++.|+++|++.|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 33322111 111567999999999999999887764
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.73 E-value=2.9e-05 Score=72.89 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=63.2
Q ss_pred HHHHHHHhhhcCCCEEEEEecC-CCCCCCcc-hHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CC--ce
Q 018454 201 RIWGELYKVIDSSDVVVQVLDA-RDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YP--SL 275 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDa-rdp~~s~~-~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p--~~ 275 (355)
.+...+...+..+|++|+|+|+ ........ ..+.+++.. .++|+++|+||+|+++... .+.+.+... .+ ..
T Consensus 156 ~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 156 QIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLG 231 (315)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTC
T ss_pred HHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCC
Confidence 4556677888999999999997 43433333 355555543 4789999999999986542 122223221 11 12
Q ss_pred E---EEeeecC---CCChHHHHHHHHHHHhh
Q 018454 276 A---FHASINK---SFGKGSLLSVLRQFARL 300 (355)
Q Consensus 276 ~---f~vSa~~---~~Gi~~Ll~~L~q~~~~ 300 (355)
. +.+|+.+ +.|+.+|++.+.++++.
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 2 2346666 78999999999988864
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.73 E-value=4.4e-05 Score=71.72 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhc--cccceEEEEeecCCCChhHHHHHhhccCc-----cccCCCCCe
Q 018454 289 SLLSVLRQFARLKS--DKQAISVGFVGYPNVGKSSVINTLRTKNV-----ILFFPASVV 340 (355)
Q Consensus 289 ~Ll~~L~q~~~~~~--~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-----~~vs~iPGt 340 (355)
.+++.|.+.+.... ......|+|||.||||||||||+|.+... ..++..||.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~ 63 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLI 63 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEE
Confidence 34555555443211 23446799999999999999999999876 445556654
No 184
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.72 E-value=4.4e-05 Score=73.84 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhhhc---cccceEEEEeecCCCChhHHHHHhhccCcc-----ccCCCCCeeE
Q 018454 287 KGSLLSVLRQFARLKS---DKQAISVGFVGYPNVGKSSVINTLRTKNVI-----LFFPASVVWY 342 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~---~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-----~vs~iPGtT~ 342 (355)
+..|++.|.+.+.... +-....|+|||.||||||||||+|.+...+ .++..|+.++
T Consensus 9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~ 72 (353)
T 2x2e_A 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ 72 (353)
T ss_dssp CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEE
Confidence 3445555554443221 223568999999999999999999998776 6677788653
No 185
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.71 E-value=2.1e-05 Score=73.19 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=59.5
Q ss_pred HHHHHHhhhcCCCEEE-EEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhh-HHHHHHHHhhh-C----C
Q 018454 202 IWGELYKVIDSSDVVV-QVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKE-Y----P 273 (355)
Q Consensus 202 i~~el~kvi~~sDvVL-~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~-~----p 273 (355)
....+...+..+|.+| +|+|+.++....+. .+.+.+.. .+.|+++|+||+|+++... ... .+... . .
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~---~~~~~~~~~~~~ 225 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARD---VLENKLLPLRRG 225 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCCHH---HHTTCSSCCTTC
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEccccCCCCchHHH---HHhCCcCcCCCC
Confidence 3344556777777555 79999876544332 24444432 4789999999999986532 222 22221 1 1
Q ss_pred -ceEEEeeecCCCChHHHHHHHHHHH
Q 018454 274 -SLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 274 -~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..++.+||+++.|+++|++.|.+..
T Consensus 226 ~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 226 YIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp EEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred cEEEECCChhhccccccHHHHHHHHH
Confidence 2356689999999999999887643
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.69 E-value=6.3e-05 Score=79.54 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHH-HHHHHhhcCCCcEEEEEeccCCCChh--------hHH----HH----HH
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNKCDLVPAW--------ATK----GW----LR 266 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l-~~~L~~~~~~k~vILVlNK~DLvp~~--------~~~----~w----~~ 266 (355)
..+...+..+|+||+|+|+.++....+..+ .+.+.. .++|+++|+||+|+++.. ... .. ..
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~ 269 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNA 269 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHH
Confidence 445567889999999999988765433222 223322 367899999999997543 111 11 11
Q ss_pred HHhhhC--------CceEEEeeec--------------CCCChHHHHHHHHHHHh
Q 018454 267 VLSKEY--------PSLAFHASIN--------------KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 267 ~l~~~~--------p~~~f~vSa~--------------~~~Gi~~Ll~~L~q~~~ 299 (355)
.+.... ...+|.+|++ ++.|+++|.+.|.+++.
T Consensus 270 ~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 270 NLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 222211 1246889999 99999999999887764
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.69 E-value=0.00025 Score=61.91 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=62.9
Q ss_pred HhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhC-CceEEEeee
Q 018454 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEY-PSLAFHASI 281 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~-p~~~f~vSa 281 (355)
......+|.+++|+|+.++.......+..++.. .+.|.++|.||+|+++.... ......+.... ....+.+|+
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 180 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS 180 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence 333467899999999998765444445555543 57899999999999875422 22222232221 234667899
Q ss_pred cCCCChHHHHHHHHHHHh
Q 018454 282 NKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 282 ~~~~Gi~~Ll~~L~q~~~ 299 (355)
+++.|+++|++.|.++..
T Consensus 181 l~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 181 LKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp TTTBSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 188
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.68 E-value=3.3e-05 Score=67.53 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=23.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|+|+|.+|||||||||+|.+...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3568999999999999999999997654
No 189
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.67 E-value=3.9e-05 Score=81.95 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=59.2
Q ss_pred cCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh-hC----C-ceEEEeeecC
Q 018454 211 DSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK-EY----P-SLAFHASINK 283 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~-~~----p-~~~f~vSa~~ 283 (355)
..+|+||+|+|+..+....+. .+.+.+.. .++|+|+|+||+|+++..... ...+.. .+ + ..++.+||.+
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~ 261 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKD 261 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEE
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccc
Confidence 688999999999988766654 56666654 478999999999999754321 111111 11 1 2345679999
Q ss_pred CCChHHHHHHHHH
Q 018454 284 SFGKGSLLSVLRQ 296 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q 296 (355)
+.|+++|++.|.+
T Consensus 262 G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 262 IDGKKDITAALAA 274 (772)
T ss_dssp SSSSEEHHHHHHH
T ss_pred cccchhHHHHHHH
Confidence 9999999999876
No 190
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=4.3e-05 Score=65.82 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.++|.++|.+|||||||||+|.+.....+.|..|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~ 51 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN 51 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc
Confidence 56799999999999999999999977766777777754
No 191
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=2.3e-05 Score=70.54 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
..++|.+||.||||||||+|+|.+...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~ 62 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD 62 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 458899999999999999999997554
No 192
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.67 E-value=4.6e-05 Score=65.31 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=31.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.++|.++|.+|||||||||+|.+.......|..|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~ 53 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN 53 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc
Confidence 46799999999999999999999987766667777755
No 193
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.64 E-value=0.00014 Score=68.94 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=53.6
Q ss_pred hhhcCCCEEEEEecCCCCCCCcch-HHHHHHHh---hcCCCcEEEEEeccCCCChhhH-------HHHHHHHhhhCC---
Q 018454 208 KVIDSSDVVVQVLDARDPQGTRCH-HLERHLKE---HCKHKHMILLLNKCDLVPAWAT-------KGWLRVLSKEYP--- 273 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~s~~~-~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~-------~~w~~~l~~~~p--- 273 (355)
..+..+|++|+|+|+.++...... .+..++.. ..++.|+++|+||+||...... ......+...+.
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 456789999999999987543221 22222322 2357999999999999873221 123333444443
Q ss_pred ceEEEeeecCCCChHHHHHH
Q 018454 274 SLAFHASINKSFGKGSLLSV 293 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~ 293 (355)
...+.+||++ .|+.+++..
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~ 174 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQ 174 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHH
T ss_pred eEEEEeeecC-ChHHHHHHH
Confidence 5677889988 566555443
No 194
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.64 E-value=0.00016 Score=80.32 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=67.5
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCc-EEEEEeccCCCChh-hH----HHHHHHHh
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAW-AT----KGWLRVLS 269 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp~~-~~----~~w~~~l~ 269 (355)
+||. ++.......+..+|++|+|+|+.++...........+.. .+.| +|+|+||+|++... .. .+..+.+.
T Consensus 367 PGHe-dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 367 PGHA-DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp CCHH-HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred CChH-HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 5663 456677778899999999999998765544443344433 3677 78999999998522 11 22222333
Q ss_pred hhC----CceEEEeeecCC--------CChHHHHHHHHHHHh
Q 018454 270 KEY----PSLAFHASINKS--------FGKGSLLSVLRQFAR 299 (355)
Q Consensus 270 ~~~----p~~~f~vSa~~~--------~Gi~~Ll~~L~q~~~ 299 (355)
... ...++.+|++++ .|+.+|++.|.++++
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 221 145788999998 468888888877654
No 195
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.63 E-value=2.7e-05 Score=67.10 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=32.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
++.++|.++|.+|||||||||+|.........|..|.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~ 57 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN 57 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE
Confidence 46799999999999999999999987776667766754
No 196
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.63 E-value=3.6e-05 Score=66.38 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=33.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
...++|.++|.+|||||||+|+|.+.....+.|.+|.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~ 51 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN 51 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE
Confidence 45789999999999999999999998877788888865
No 197
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.63 E-value=2.8e-05 Score=70.45 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL 333 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~ 333 (355)
...++|+|||.+|||||||||+|++.....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 356899999999999999999999877643
No 198
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.62 E-value=0.00014 Score=72.35 Aligned_cols=85 Identities=11% Similarity=0.011 Sum_probs=51.9
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCC-------CCCcchHHHHHHHhhcCC-CcEEEEEeccCCCCh----hh----HHHHH
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDP-------QGTRCHHLERHLKEHCKH-KHMILLLNKCDLVPA----WA----TKGWL 265 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp-------~~s~~~~l~~~L~~~~~~-k~vILVlNK~DLvp~----~~----~~~w~ 265 (355)
+.......+..+|++|+|+|+.+. ..........++.. .+ .++|+|+||+|+++. .. .++..
T Consensus 97 f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~ 174 (435)
T 1jny_A 97 FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVS 174 (435)
T ss_dssp HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 334556688999999999999984 21111222222222 24 468999999999872 11 12222
Q ss_pred HHHhhhC--C--ceEEEeeecCCCChH
Q 018454 266 RVLSKEY--P--SLAFHASINKSFGKG 288 (355)
Q Consensus 266 ~~l~~~~--p--~~~f~vSa~~~~Gi~ 288 (355)
+.+.... + ..++.+||++|.|+.
T Consensus 175 ~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 175 KFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp HHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred HHHHHcCCCcCCceEEEeecccCcccc
Confidence 3333221 1 457889999999986
No 199
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.61 E-value=6.5e-05 Score=78.11 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=30.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc-ccCCCC-Cee--EEEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPAS-VVW--YWFY 345 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iP-GtT--~~~y 345 (355)
...+.|+|||.||||||||||+|.+.... .++..+ ++| .|+|
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~ 81 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW 81 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe
Confidence 45678999999999999999999998743 333322 344 5554
No 200
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.61 E-value=5.7e-05 Score=65.72 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=31.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.++|+++|.+|||||||||+|.+.....+.|..|.+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~ 58 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT 58 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC
Confidence 35678999999999999999999988777777777776
No 201
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.61 E-value=2.2e-05 Score=81.56 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=51.1
Q ss_pred hhcCCCEEEEEecCCCCC-------CCcchHHHHHHHhhcCCCc-EEEEEeccCCCC--hhhHH----HHHHHH-hhh-C
Q 018454 209 VIDSSDVVVQVLDARDPQ-------GTRCHHLERHLKEHCKHKH-MILLLNKCDLVP--AWATK----GWLRVL-SKE-Y 272 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~-------~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp--~~~~~----~w~~~l-~~~-~ 272 (355)
.+..+|++|+|+|+.++. ..........+.. .+.| +|+|+||+||+. ..... .....+ ... +
T Consensus 275 ~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 275 GASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp -------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCC
Confidence 467799999999999753 2222222333332 3565 899999999986 22222 222223 111 1
Q ss_pred ---CceEEEeeecCCCChH--------------HHHHHHHHHHh
Q 018454 273 ---PSLAFHASINKSFGKG--------------SLLSVLRQFAR 299 (355)
Q Consensus 273 ---p~~~f~vSa~~~~Gi~--------------~Ll~~L~q~~~ 299 (355)
...++.+||++|.|+. .|++.|..+.+
T Consensus 353 ~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 1246789999999997 78888876654
No 202
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.57 E-value=8.5e-05 Score=63.92 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=29.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFY 345 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y 345 (355)
..++|.|+|.+|||||||||+|.+.... ....|+++.+.+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~ 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFK 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEE
Confidence 4689999999999999999999976533 233354443333
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.57 E-value=7.5e-05 Score=66.11 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhCC-ceEEEeeecCCCChH
Q 018454 212 SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-SLAFHASINKSFGKG 288 (355)
Q Consensus 212 ~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~p-~~~f~vSa~~~~Gi~ 288 (355)
.++.+|+|+|+.++.. .+..+... .+.|.++|+||+|+.+.. ......+.+....+ ..++.+|++++.|++
T Consensus 129 ~~~~~i~vvd~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 202 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD----VVEKHPEI--FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFE 202 (221)
T ss_dssp SCSEEEEEEEGGGCTT----HHHHCHHH--HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred ccCcEEEEEeCCCcch----hhhhhhhh--hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence 4578999999987532 12222221 247899999999996532 23334444443333 457789999999999
Q ss_pred HHHHHHHHHHh
Q 018454 289 SLLSVLRQFAR 299 (355)
Q Consensus 289 ~Ll~~L~q~~~ 299 (355)
+|++.|.+.+.
T Consensus 203 ~l~~~l~~~~~ 213 (221)
T 2wsm_A 203 EWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 204
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.56 E-value=9.2e-05 Score=62.34 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
..++|.++|.+|||||||||+|.+....
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 40 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD 40 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4588999999999999999999976543
No 205
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.56 E-value=4.6e-05 Score=65.39 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=32.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+.++|.++|.+|||||||||+|.+.....+.|.+|.+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~ 56 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN 56 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee
Confidence 45789999999999999999999988877788888865
No 206
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=7.8e-05 Score=64.64 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=32.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT 341 (355)
...++|+++|.+|||||||||+|.+... ..+.|.+|+|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 59 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS 59 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCccee
Confidence 4578999999999999999999998764 3678888876
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.54 E-value=5.7e-05 Score=73.27 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
....|+|+|+||||||||||+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 208
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.54 E-value=7.4e-05 Score=64.81 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|+|+|.+|||||||||+|.+...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 39 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF 39 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4568999999999999999999998763
No 209
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.52 E-value=0.0002 Score=72.09 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCC--------CCcchHHHHHHHhhcCCCc-EEEEEeccCCCC----hhh----HHHH
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKEHCKHKH-MILLLNKCDLVP----AWA----TKGW 264 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~--------~s~~~~l~~~L~~~~~~k~-vILVlNK~DLvp----~~~----~~~w 264 (355)
+.......+..+|++|+|+|+.+.. .....++ ..+.. .+.| +|+|+||+||.+ ... ..+.
T Consensus 134 f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~ 210 (467)
T 1r5b_A 134 YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDEPSVQWSEERYKECVDKL 210 (467)
T ss_dssp --------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH--cCCCEEEEEEECccCCCccccHHHHHHHHHHH
Confidence 4445556788999999999999863 1111222 22222 4676 999999999964 111 1223
Q ss_pred HHHHhhh--C----CceEEEeeecCCCChHH
Q 018454 265 LRVLSKE--Y----PSLAFHASINKSFGKGS 289 (355)
Q Consensus 265 ~~~l~~~--~----p~~~f~vSa~~~~Gi~~ 289 (355)
...+... + ...++.+|+++|.|+.+
T Consensus 211 ~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 211 SMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp HHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred HHHHHHhcCCCccCCceEEeccccccccccc
Confidence 3333322 1 23467889999999875
No 210
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0001 Score=76.80 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCC-------CCcchHHHHHHHhhcCCCcEEEEEeccCCCCh--hhH----H
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-------GTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WAT----K 262 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~-------~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~--~~~----~ 262 (355)
+|| .++.......+..+|++|+|+|+.++. ..........+.. ....++|+|+||+|+++. ... .
T Consensus 253 PG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~~~~~~~~ei~~ 330 (611)
T 3izq_1 253 PGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFEEIKS 330 (611)
T ss_dssp CSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTTTCHHHHHHHHH
T ss_pred CCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccchhHHHHHHHHH
Confidence 344 335566667889999999999998741 1111222222222 123459999999999872 111 1
Q ss_pred HHHHHHhhhC----CceEEEeeecCCCChHHH
Q 018454 263 GWLRVLSKEY----PSLAFHASINKSFGKGSL 290 (355)
Q Consensus 263 ~w~~~l~~~~----p~~~f~vSa~~~~Gi~~L 290 (355)
.....+.... ...++.+||++|.|+.+|
T Consensus 331 ~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 331 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222222211 245788999999999743
No 211
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.49 E-value=9.1e-05 Score=63.88 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcccc--CCCCCeeE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILF--FPASVVWY 342 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v--s~iPGtT~ 342 (355)
....+|.|+|.+|||||||||+|.+.....+ .|..|.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~ 55 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV 55 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE
Confidence 4568899999999999999999999887766 77778653
No 212
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.48 E-value=0.00012 Score=63.91 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
.+.++|.|+|.+|||||||||+|.+....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 45789999999999999999999987654
No 213
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.47 E-value=0.0001 Score=62.48 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
..++|.|+|.+|||||||||+|.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC
Confidence 468899999999999999999998764
No 214
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.47 E-value=4.4e-05 Score=66.93 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
...++|.|||.+|||||||||+|.+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhc
Confidence 35689999999999999999999754
No 215
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.46 E-value=3.8e-05 Score=74.61 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=29.6
Q ss_pred EEEEeecCCCChhHHHHHhhccCccccCCCCCeeEE
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYW 343 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~ 343 (355)
.|+|||+||||||||||+|...+ ..++.+|++|..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~ 194 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLV 194 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccC
Confidence 68999999999999999999765 456788888744
No 216
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.46 E-value=0.00021 Score=75.18 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
.++...+..+|.+++|+|+.+........+.+.+.. .+.|+|+|+||+|+.
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 456667888999999999987765444444444443 479999999999987
No 217
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.46 E-value=0.00015 Score=63.82 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
.+.++|.++|.+|||||||||+|.....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence 4679999999999999999999997543
No 218
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.45 E-value=0.00031 Score=68.03 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=52.4
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhH----HHHHHHHhhhC------CceEEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEY------PSLAFH 278 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~----~~w~~~l~~~~------p~~~f~ 278 (355)
+.+.+|++++|+|+.++... ..+...+ ...+.++|+||+|+.+.... ..+...+.... ...++.
T Consensus 184 l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~ 257 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIR 257 (349)
T ss_dssp HHTTCSEEEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEE
T ss_pred HHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 46789999999998765321 1121112 24688999999999864322 22222222111 124577
Q ss_pred eeecCCCChHHHHHHHHHHHh
Q 018454 279 ASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+|++++.|+++|++.|.++..
T Consensus 258 iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 258 ISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHH
Confidence 899999999999999988764
No 219
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.45 E-value=0.00037 Score=71.45 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
..+...+..+|.+|+|+|+.++.......+...+.. .+.|+++|+||+|+...
T Consensus 97 ~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 97 EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 345667899999999999998764433444444332 47899999999999753
No 220
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.44 E-value=0.0003 Score=74.33 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=39.7
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
.++...+..+|.+|+|+|+.+........+...+.. .+.|+++|+||+|+...
T Consensus 92 ~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 92 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 445667788999999999998765544444444443 57999999999999753
No 221
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.44 E-value=5.3e-05 Score=77.31 Aligned_cols=85 Identities=25% Similarity=0.221 Sum_probs=57.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHh------hhC--CceEEEee
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS------KEY--PSLAFHAS 280 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~------~~~--p~~~f~vS 280 (355)
.+..+|++|+|+|+.++...........+.. .+.|+|+|+||+|+..... ......+. ..+ ...++.+|
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVS 147 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECC
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEe
Confidence 5688999999999998654444444444433 5789999999999964210 00111111 111 14578899
Q ss_pred ecCCCChHHHHHHHHH
Q 018454 281 INKSFGKGSLLSVLRQ 296 (355)
Q Consensus 281 a~~~~Gi~~Ll~~L~q 296 (355)
|++|.|+++|++.|..
T Consensus 148 AktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 148 AKAGTGIDELLDAILL 163 (501)
T ss_dssp TTTCTTCTTHHHHTTT
T ss_pred eeeccCcchhhhhhhh
Confidence 9999999999998754
No 222
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.44 E-value=7.9e-05 Score=76.73 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=34.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc--ccCCCCCeeEE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI--LFFPASVVWYW 343 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~--~vs~iPGtT~~ 343 (355)
....|+|+|.+|||||||||+|++.+.+ .+++.|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 4578999999999999999999999876 68999998743
No 223
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.43 E-value=0.00014 Score=62.82 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=25.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.++|.+|||||||||+|.+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999999998764
No 224
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.43 E-value=7.4e-05 Score=75.07 Aligned_cols=86 Identities=9% Similarity=-0.086 Sum_probs=52.5
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCC-------cchHHHHHHHhhcCCCc-EEEEEeccCCCC--hhhHH----HHHH
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGT-------RCHHLERHLKEHCKHKH-MILLLNKCDLVP--AWATK----GWLR 266 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s-------~~~~l~~~L~~~~~~k~-vILVlNK~DLvp--~~~~~----~w~~ 266 (355)
++.......+..+|++|+|+|+.++... ........+.. .+.| +|+|+||+||++ ..... +...
T Consensus 97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~ 174 (458)
T 1f60_A 97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDESRFQEIVKETSN 174 (458)
T ss_dssp THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCHHHHHHHHHHHHH
Confidence 4555666788999999999999875311 11112222222 3554 899999999984 22211 2222
Q ss_pred HHhhhC----CceEEEeeecCCCChH
Q 018454 267 VLSKEY----PSLAFHASINKSFGKG 288 (355)
Q Consensus 267 ~l~~~~----p~~~f~vSa~~~~Gi~ 288 (355)
.+.... ...++.+||+++.|+.
T Consensus 175 ~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 175 FIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp HHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred HHHHcCCCccCceEEEeecccCcCcc
Confidence 222221 1457889999999975
No 225
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00012 Score=63.02 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCCChHHHHHHHHHHHhhh---ccccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 283 KSFGKGSLLSVLRQFARLK---SDKQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~---~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
....+..+.+.+.++.... .....+.|.++|.+|||||||||+|.+...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp TTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345666776666654321 124568999999999999999999998753
No 226
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.42 E-value=9.1e-05 Score=65.67 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=32.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhh-ccCccccCCCCCeeEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLR-TKNVILFFPASVVWYW 343 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll-~~~~~~vs~iPGtT~~ 343 (355)
...++|.++|.+|||||||||+|+ +.....+.+.+|+|..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~ 53 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH 53 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE
Confidence 456899999999999999999955 4445667888998743
No 227
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.41 E-value=0.00011 Score=63.80 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
...++|.++|.+|||||||||+|.+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999999999765
No 228
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.40 E-value=0.00036 Score=67.19 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=53.5
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh----hC------CceEEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EY------PSLAFH 278 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~----~~------p~~~f~ 278 (355)
++..+|++|+|+|+..+.... .+.... .+.|.++|+||+|+.+......+...+.. .. ...++.
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 239 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQ--GIKKGL----MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT 239 (341)
T ss_dssp HHTTCSEEEEEECC------C--CCCHHH----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred HHHhCCEEEEEEeCCccHHHH--HHHHhh----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEE
Confidence 458999999999987543211 111111 13678999999999875433333333321 11 234678
Q ss_pred eeecCCCChHHHHHHHHHHHh
Q 018454 279 ASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 279 vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
+||+++.|+++|++.|.+.+.
T Consensus 240 iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 240 CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CBGGGTBSHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 229
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.39 E-value=0.00014 Score=62.40 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=24.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
+.++|.++|.+|||||||||+|.+...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCC
Confidence 458899999999999999999997653
No 230
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.38 E-value=8.5e-05 Score=65.16 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=27.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
.+..+|+++|.+|||||||||+|.+.....+.|..|.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~ 60 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce
Confidence 35678999999999999999999987766666666655
No 231
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.37 E-value=0.00014 Score=62.72 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=27.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccc-cCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL-FFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-vs~iPGt 340 (355)
...++|.|+|.+|||||||||+|.+..... ..+..|.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 55 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV 55 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce
Confidence 356899999999999999999999765433 3344443
No 232
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.36 E-value=0.00017 Score=62.21 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=28.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC--ccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN--VILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~--~~~vs~iPGtT 341 (355)
.+.++|.++|.+|||||||||+|.+.. .....+..|.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~ 58 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS 58 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee
Confidence 456899999999999999999999876 33445555644
No 233
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.35 E-value=0.0002 Score=61.73 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=29.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcccc-CCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILF-FPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v-s~iPGtT 341 (355)
...++|+|+|.+|||||||||+|.+...... .+..|.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~ 61 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVE 61 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 3468999999999999999999998765543 3334543
No 234
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.35 E-value=0.00042 Score=73.17 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCCh
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~ 258 (355)
++...+..+|.+|+|+|+.++.......+...+.. .+.|+|+|+||+|+...
T Consensus 91 ~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 91 EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 34556777999999999998765555455555544 47999999999999763
No 235
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.35 E-value=5.3e-05 Score=65.72 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=7.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
...++|.|+|.+|||||||||+|.+..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~ 44 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKG 44 (208)
T ss_dssp EEEEEEEEC------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCC
Confidence 356899999999999999999999873
No 236
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.34 E-value=0.00019 Score=61.97 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=30.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT 341 (355)
++.++|.|+|.+|||||||||+|.+.... ...|..|.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 58 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN 58 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee
Confidence 45789999999999999999999976654 345666665
No 237
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.32 E-value=0.00018 Score=62.45 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccc-cCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL-FFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-vs~iPGt 340 (355)
...++|.++|.+|||||||||+|.+..... ..+..|.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~ 61 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV 61 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce
Confidence 456889999999999999999999866432 3344454
No 238
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.00021 Score=61.87 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
...++|.++|.+|||||||||+|.+..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 456899999999999999999999866
No 239
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.31 E-value=0.00019 Score=73.25 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHHHhhh------ccccceEEEEeecCCCChhHHHHHhhccC
Q 018454 284 SFGKGSLLSVLRQFARLK------SDKQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 284 ~~Gi~~Ll~~L~q~~~~~------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
..|+..+.+.+++..... .....++|++||.||||||||||+|.+..
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 458888888888776521 23456899999999999999999999865
No 240
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.31 E-value=0.00023 Score=60.53 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.|+|.+|||||||||+|.+...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4578999999999999999999997643
No 241
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.31 E-value=0.00047 Score=70.95 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
||| ..+..++...+.-+|.+|+||||.+.....-..+.+...+ .+.|.|+++||+|...
T Consensus 108 PGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCC
T ss_pred CCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchh
Confidence 444 3456678889999999999999998877666666666655 6899999999999753
No 242
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.30 E-value=0.00077 Score=71.34 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=39.6
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp 257 (355)
+..++...+..+|.+|+|+|+.+........+.+.+.. .+.|+++|+||+|+..
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCccc
Confidence 34556667888999999999998765443444444433 4789999999999865
No 243
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.00028 Score=60.40 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=29.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT 341 (355)
..++|.|+|.+|||||||||+|.+.... ...+..|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~ 51 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD 51 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceE
Confidence 4689999999999999999999986643 345555654
No 244
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.29 E-value=0.0006 Score=62.35 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=60.8
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHH---HHHHHhh--cCCCcEEEEEecc-CCCChhhHHHHHHHHhh---
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHL---ERHLKEH--CKHKHMILLLNKC-DLVPAWATKGWLRVLSK--- 270 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l---~~~L~~~--~~~k~vILVlNK~-DLvp~~~~~~w~~~l~~--- 270 (355)
.+|+. +.+++|.||+|||+.|..-... .++ ...+.++ ..+.|++|+.||. |+.......+..+.+.-
T Consensus 117 plWr~---Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l 193 (227)
T 3l82_B 117 PQIQK---VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL 193 (227)
T ss_dssp CCHHH---HHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG
T ss_pred HHHHH---HhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC
Confidence 35555 6688999999999987632212 223 1222222 2567899999996 67432222333333321
Q ss_pred hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 271 EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 271 ~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+..+..+||.+|.|+.+-+++|.+.+
T Consensus 194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 194 NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 2467788899999999999999987544
No 245
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.28 E-value=0.0011 Score=66.00 Aligned_cols=93 Identities=25% Similarity=0.287 Sum_probs=62.3
Q ss_pred HhhhcCCCEEEEEecCC-CCCCCcchHHHHHHHhh---cCCCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeec
Q 018454 207 YKVIDSSDVVVQVLDAR-DPQGTRCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDar-dp~~s~~~~l~~~L~~~---~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~ 282 (355)
.+.++.+|.+|+|+|+. ++.... ..+.+.+... ..++|.|+|+||+|+........+.+.+... ...++.+||.
T Consensus 230 l~~~era~~lL~vvDls~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~-g~~vi~iSA~ 307 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE-GLAVLPVSAL 307 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEECCTT
T ss_pred HHHHHHHHhhhEEeCCccCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 34578899999999996 332111 1112222111 1368999999999998764444455555432 3456788999
Q ss_pred CCCChHHHHHHHHHHHhhh
Q 018454 283 KSFGKGSLLSVLRQFARLK 301 (355)
Q Consensus 283 ~~~Gi~~Ll~~L~q~~~~~ 301 (355)
++.|+++|++.|.+.+...
T Consensus 308 ~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 308 TGAGLPALKEALHALVRST 326 (416)
T ss_dssp TCTTHHHHHHHHHHHHHTS
T ss_pred CccCHHHHHHHHHHHHHhc
Confidence 9999999999998887643
No 246
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.28 E-value=0.00022 Score=62.09 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=23.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT 341 (355)
...++|.++|.+|||||||||+|.+... ..+.+.+|++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 64 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD 64 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce
Confidence 4568999999999999999999998663 3455666654
No 247
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.27 E-value=0.00018 Score=60.82 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL 333 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~ 333 (355)
...++|.++|.+|||||||||+|.+.....
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 39 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE 39 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 456899999999999999999999876543
No 248
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.26 E-value=0.00018 Score=63.00 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=22.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.|+|.+|||||||||+|.+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKF 50 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3568999999999999999999997654
No 249
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.26 E-value=0.00033 Score=60.99 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
..+.|++||.+|||||||||.|.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 3578999999999999999999987643
No 250
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00035 Score=61.70 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=24.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
..++|+++|.+|||||||||+|.+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 468999999999999999999997653
No 251
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.25 E-value=0.00032 Score=58.94 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=29.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccc-cCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL-FFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~-vs~iPGtT 341 (355)
...++|.++|.+|||||||||+|.+..... ..+..|.+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 51 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE 51 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE
Confidence 356899999999999999999999876433 34445543
No 252
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.25 E-value=0.00035 Score=60.05 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=29.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW 341 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT 341 (355)
..++|+|+|.+|||||||||+|.+.... ...+..|++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 58 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID 58 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE
Confidence 4589999999999999999999987643 334555654
No 253
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.21 E-value=0.00074 Score=58.78 Aligned_cols=91 Identities=14% Similarity=0.041 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHhh-cCCCcEEEEEeccCCCChhh-HHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~-~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
....+|++|+|+|+.++..... ..+...+... ..+.|+++|+||+||..... .......+........+.+|++++.
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 153 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4467899999999987643211 1222222221 24688999999999964321 1111223333344556778999999
Q ss_pred ChHHHHHHHHHHHh
Q 018454 286 GKGSLLSVLRQFAR 299 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~ 299 (355)
|++++++.|.+.+.
T Consensus 154 ~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 NVEEAFKNILTEIY 167 (199)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876654
No 254
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.21 E-value=7e-05 Score=74.82 Aligned_cols=46 Identities=24% Similarity=0.074 Sum_probs=26.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEEEEEee
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFYCQLLF 350 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y~~l~~ 350 (355)
....|+|+|.+|||||||+|+|.+.....+++.||+|.+.+...+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~ 78 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSME 78 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEE
Confidence 4678999999999999999999999888889999998554443333
No 255
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.20 E-value=0.00025 Score=61.72 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=30.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt 340 (355)
.+.++|.++|.+|||||||||+|.........|..|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~ 63 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF 63 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce
Confidence 5679999999999999999999997766555554453
No 256
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00036 Score=60.44 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=25.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
...++|.++|.+|||||||||+|.+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~ 54 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI 54 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 35689999999999999999999987654
No 257
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.19 E-value=0.00026 Score=62.33 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.|+|.+|||||||||+|.+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3468999999999999999999997653
No 258
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.19 E-value=0.00026 Score=62.36 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc-cccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-ILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~-~~vs~iPGtT 341 (355)
...++|+|+|.+|||||||||+|.+... ....+..|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 47 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV 47 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 3568999999999999999999996553 3345666765
No 259
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.17 E-value=0.001 Score=59.99 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCCCChhhHHHHH-------HHHhh
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWL-------RVLSK 270 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DLvp~~~~~~w~-------~~l~~ 270 (355)
.+.+.+......+|++|+|+|+.+... .+..+...+.+ ....+|+++|+||+|++.......++ ..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 344445556678899999999875433 33333333322 11346999999999998654333222 22222
Q ss_pred hCCceEEEeeec-----CCCChHHHHHHHHHHHh
Q 018454 271 EYPSLAFHASIN-----KSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 271 ~~p~~~f~vSa~-----~~~Gi~~Ll~~L~q~~~ 299 (355)
.+....+.++.. +..|+.+|++.+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 222222333333 23577788887776664
No 260
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.17 E-value=0.00087 Score=61.37 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh----cCCCcEEEEEeccCCCChhhHH-------HHHHHHhhhC
Q 018454 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH----CKHKHMILLLNKCDLVPAWATK-------GWLRVLSKEY 272 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~~~-------~w~~~l~~~~ 272 (355)
+-+......+|++|+|+|+.. ....+..+.+.+.+. ..+.|+|||.||+||....... ...+.+.+.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 333445599999999999975 333344444555431 1257999999999997532111 1122222223
Q ss_pred Cc--eEEEeee---cCCCChHHHHHHHHHHHhh
Q 018454 273 PS--LAFHASI---NKSFGKGSLLSVLRQFARL 300 (355)
Q Consensus 273 p~--~~f~vSa---~~~~Gi~~Ll~~L~q~~~~ 300 (355)
.. .+|..++ .++.|+.+|++.+.+++..
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 22 2232222 2257899999999888764
No 261
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.13 E-value=0.00037 Score=61.68 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=23.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
.+.++|.++|.+|||||||||+|.+...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3568999999999999999999997654
No 262
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.12 E-value=0.00038 Score=69.90 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=32.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
...++|.+||.||||||||||+|.+.....+.|..|.+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~ 357 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN 357 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCcccee
Confidence 35689999999999999999999998877777777765
No 263
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.11 E-value=0.00077 Score=57.25 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|+|+|.+|||||||||+|.+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568999999999999999999997653
No 264
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.10 E-value=0.00017 Score=63.53 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=37.7
Q ss_pred hcCCCEEEEEecCC-CCCCCc--chHHHHHHHh----hcCCCcEEEEEeccCCCChhhHHHHHHH-------HhhhCCce
Q 018454 210 IDSSDVVVQVLDAR-DPQGTR--CHHLERHLKE----HCKHKHMILLLNKCDLVPAWATKGWLRV-------LSKEYPSL 275 (355)
Q Consensus 210 i~~sDvVL~VvDar-dp~~s~--~~~l~~~L~~----~~~~k~vILVlNK~DLvp~~~~~~w~~~-------l~~~~p~~ 275 (355)
+..+|++|+|+|+. ++.... ...+...+.. ...+.|+++|+||+||.+......+.+. +.......
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 45589999999998 543321 1222222221 1147899999999999875432222222 21112223
Q ss_pred EEEeeecCCCC
Q 018454 276 AFHASINKSFG 286 (355)
Q Consensus 276 ~f~vSa~~~~G 286 (355)
.+.+|++++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 45568777654
No 265
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.09 E-value=0.00056 Score=73.08 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=39.4
Q ss_pred eecCCCChHHHHHHHHHHHhh---hc---cccceEEEEeecCCCChhHHHHHhhccCccccCCCCC
Q 018454 280 SINKSFGKGSLLSVLRQFARL---KS---DKQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASV 339 (355)
Q Consensus 280 Sa~~~~Gi~~Ll~~L~q~~~~---~~---~~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPG 339 (355)
++..+.|+++|+..+.++... .. .-....|+|||.+|+|||||||+|++...+.++.-+-
T Consensus 19 ~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~ 84 (772)
T 3zvr_A 19 SHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV 84 (772)
T ss_dssp ------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCS
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccc
Confidence 555677888887776654331 11 1234688999999999999999999988766665443
No 266
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.09 E-value=0.00029 Score=60.77 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=25.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVIL 333 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~ 333 (355)
...++|.|+|.+|||||||||+|.+.....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 48 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQP 48 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence 356899999999999999999999876543
No 267
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.06 E-value=0.0014 Score=61.26 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=29.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCCCCCeeEEEE
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVWYWFY 345 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT~~~y 345 (355)
...++|.++|.+|||||||||.|..... ....++++.+.+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~ 192 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNY 192 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCccccee
Confidence 3568999999999999999999997653 233344443333
No 268
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00038 Score=61.88 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=25.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
...++|.|+|.+|||||||||+|.+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~ 39 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFN 39 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 34689999999999999999999987644
No 269
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00039 Score=59.91 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
...++|.++|.+|||||||||+|.+..
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999999764
No 270
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.03 E-value=0.00058 Score=66.45 Aligned_cols=75 Identities=7% Similarity=0.017 Sum_probs=37.5
Q ss_pred CCEEEEEecC-CCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH---hhhCCceEEEeeecCCCChH
Q 018454 213 SDVVVQVLDA-RDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL---SKEYPSLAFHASINKSFGKG 288 (355)
Q Consensus 213 sDvVL~VvDa-rdp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l---~~~~p~~~f~vSa~~~~Gi~ 288 (355)
+|++|+++|. .+++...+..+.+.+ ..+.|+|+|+||+|+........+...+ ...+...+|.+|++++.| +
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~ 221 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D 221 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence 4578888875 444433332333333 3578999999999998765444332222 222344566779998887 4
Q ss_pred HHH
Q 018454 289 SLL 291 (355)
Q Consensus 289 ~Ll 291 (355)
+.+
T Consensus 222 e~~ 224 (361)
T 2qag_A 222 EDF 224 (361)
T ss_dssp --C
T ss_pred hhH
Confidence 433
No 271
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00032 Score=60.57 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=28.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc-ccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI-LFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~-~vs~iPGtT 341 (355)
...++|.|+|.+|||||||||+|.+.... ...+.+|++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 59 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGID 59 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeE
Confidence 35689999999999999999999976532 233444544
No 272
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.01 E-value=8.4e-05 Score=64.82 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.|+|.+|||||||||+|.+...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3468999999999999999999997653
No 273
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.01 E-value=0.00045 Score=60.99 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=27.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc-----CccccCCCCCe
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK-----NVILFFPASVV 340 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~-----~~~~vs~iPGt 340 (355)
....|.|+|.+|||||||+|.|... +++.+...||+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~ 69 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS 69 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC
Confidence 4567899999999999999999864 34445555554
No 274
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.01 E-value=0.00032 Score=67.74 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred HHhhh-cCCCEEEEEecCCCCCCCcch-HHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhhh-CC-----ceEE
Q 018454 206 LYKVI-DSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YP-----SLAF 277 (355)
Q Consensus 206 l~kvi-~~sDvVL~VvDardp~~s~~~-~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~~-~p-----~~~f 277 (355)
+..++ ..+|+||+|+|+.......+. .+.+.+.. .+.|+|+|+||+|+++.... +...+... ++ ..++
T Consensus 160 ~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 160 LMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVV 235 (353)
T ss_dssp HHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEE
Confidence 33444 455788888888765443332 23333332 47899999999999865321 11222221 11 2345
Q ss_pred EeeecCCCChHHHHHHHHH
Q 018454 278 HASINKSFGKGSLLSVLRQ 296 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q 296 (355)
.+|++++.|+++|++.+.+
T Consensus 236 ~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHH
T ss_pred eCCcccccccccHHHHHHH
Confidence 6799999999999988865
No 275
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00058 Score=59.86 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=24.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
..++|+++|.+|||||||||+|.+....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFP 51 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 4578999999999999999999987644
No 276
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.0021 Score=61.36 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhcCCCEEEEEecCCCCCCCcc-hHHH---HHHHhh--cCCCcEEEEEec-cCCCChhhHHHHHHHHhh--
Q 018454 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLE---RHLKEH--CKHKHMILLLNK-CDLVPAWATKGWLRVLSK-- 270 (355)
Q Consensus 200 ~ri~~el~kvi~~sDvVL~VvDardp~~s~~-~~l~---~~L~~~--~~~k~vILVlNK-~DLvp~~~~~~w~~~l~~-- 270 (355)
+..|+. +.+++|.||+|||+.|..--.. .++. ..+.++ ..+.|++|+.|| -|+.......+..+.+.-
T Consensus 201 RplWr~---Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~ 277 (312)
T 3l2o_B 201 IPQIQK---VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 277 (312)
T ss_dssp CHHHHH---HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHH---HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc
Confidence 456666 6678999999999987643211 2222 333332 257899999997 577433223333333321
Q ss_pred -hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 271 -EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 271 -~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+..+..+||.+|.|+.+-+++|.+.+
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 1466788899999999999999998665
No 277
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.96 E-value=0.00054 Score=66.73 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=58.0
Q ss_pred hhhcCCCEEEEEecCCCCCC--------CcchHHHHHHHh-----hcCCCcEEEEEeccCCCCh----------------
Q 018454 208 KVIDSSDVVVQVLDARDPQG--------TRCHHLERHLKE-----HCKHKHMILLLNKCDLVPA---------------- 258 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~~--------s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~---------------- 258 (355)
...+.++.||+|+|+.+... ........++.. ...+.|+|||+||+||...
T Consensus 212 ~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g 291 (353)
T 1cip_A 212 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 291 (353)
T ss_dssp GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCS
T ss_pred HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCC
Confidence 36789999999999987532 112223333322 2357899999999998522
Q ss_pred ----hhHHHHHHH-Hhh------hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 259 ----WATKGWLRV-LSK------EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 259 ----~~~~~w~~~-l~~------~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.....|... +.. ......+.+||+++.|+.++++.+.+..
T Consensus 292 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 292 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp CSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 122233321 111 2344566789999999999999887654
No 278
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.95 E-value=0.00068 Score=59.34 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.|+|.+|||||||||+|.+...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 3468999999999999999999997653
No 279
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.94 E-value=0.001 Score=58.94 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
...++|.|||.+|||||||||+|.+....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~ 53 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP 53 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 35689999999999999999999987643
No 280
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.91 E-value=0.00052 Score=71.81 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+|| ..+..++...+.-+|.+|+||||.+.....-..+.+...+ .+.|.|+++||+|..
T Consensus 75 PGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 75 PGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQN 132 (638)
T ss_dssp CCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSS
T ss_pred CCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccc
Confidence 454 3456678889999999999999998887766677776665 479999999999975
No 281
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.89 E-value=0.00034 Score=69.17 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHH
Q 018454 243 HKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL 291 (355)
Q Consensus 243 ~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll 291 (355)
.+|+|+|+||+|+........+.+.+... +..++.+||..+.|+.+|+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKR-GYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHT-TCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhc-CCcEEEEeccchhhHHHHH
Confidence 49999999999987432233333333221 3457788999988877653
No 282
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.88 E-value=0.0013 Score=57.97 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=24.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.+||.+|||||||||+|.+...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568999999999999999999998654
No 283
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.87 E-value=0.00039 Score=69.26 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=28.0
Q ss_pred eEEEEeecCCCChhHHHHHhhccCccccCCCCCee
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKNVILFFPASVVW 341 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGtT 341 (355)
-.|++||.||||||||||+|.+... .++..|.+|
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftT 191 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTT 191 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccce
Confidence 4589999999999999999998653 566777766
No 284
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.0014 Score=56.59 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
.+.++|.|+|.+|||||||||+|......
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~ 46 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV 46 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46789999999999999999999986643
No 285
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.83 E-value=0.002 Score=55.88 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=56.1
Q ss_pred hhcCCCEEEEEecCCCCCCCcc-hHHHHHHHh-hcCCCcEEEEEeccCCCChh-hHHHHHHHHhhhCCceEEEeeecCCC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~-~~l~~~L~~-~~~~k~vILVlNK~DLvp~~-~~~~w~~~l~~~~p~~~f~vSa~~~~ 285 (355)
....+|.+++|+|..++..... ..+...+.. ...+.++++|+||+||.... ........+........+.+|++++.
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST 177 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 4567899999999876532111 112222222 12467899999999996421 11122233333344566778999999
Q ss_pred ChHHHHHHHHHH
Q 018454 286 GKGSLLSVLRQF 297 (355)
Q Consensus 286 Gi~~Ll~~L~q~ 297 (355)
|++++++.|.+.
T Consensus 178 ~v~~l~~~l~~~ 189 (191)
T 1oix_A 178 NVEAAFQTILTE 189 (191)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988754
No 286
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.83 E-value=0.00078 Score=59.21 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
.....|.|+|.+|||||||||+|.+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999999998764
No 287
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.84 E-value=0.00019 Score=62.60 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccC
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+.++|+++|.+|||||||||+|....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 457899999999999999999998654
No 288
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.79 E-value=0.0013 Score=64.16 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=56.0
Q ss_pred hhhcCCCEEEEEecCCCCC--------CCcchHHHHHHHh-----hcCCCcEEEEEeccCCCCh----------------
Q 018454 208 KVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPA---------------- 258 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~--------~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~---------------- 258 (355)
...+.++.||+|+|+.+.. .........++.. ...+.|+|||+||+||...
T Consensus 220 ~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g 299 (362)
T 1zcb_A 220 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG 299 (362)
T ss_dssp TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccC
Confidence 4668999999999998742 1111222222222 2357899999999998521
Q ss_pred -----hhHHHHH-HHHhh------hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 259 -----WATKGWL-RVLSK------EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 259 -----~~~~~w~-~~l~~------~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
.....|. ..+.. ..+...+.+||+++.|+.++++.+.+..
T Consensus 300 ~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 300 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 1112222 11111 2234566789999999999998876554
No 289
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.77 E-value=0.0011 Score=66.13 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..++|++||.+|+|||||+|+|+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999764
No 290
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.76 E-value=0.0025 Score=56.36 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=50.2
Q ss_pred CCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChh--hHHHHHHHHhhhC-CceEEEeeecCCCChHH
Q 018454 213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEY-PSLAFHASINKSFGKGS 289 (355)
Q Consensus 213 sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~--~~~~w~~~l~~~~-p~~~f~vSa~~~~Gi~~ 289 (355)
.+.++.|+|+..+....... ...+ ++|.++|+||+|+.+.. ......+.+.... ...++.+|++++.|+++
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGIM-----KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHHH-----TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhHh-----hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHH
Confidence 45677888864432221111 1122 47899999999997542 2233333333322 24577889999999999
Q ss_pred HHHHHHHHH
Q 018454 290 LLSVLRQFA 298 (355)
Q Consensus 290 Ll~~L~q~~ 298 (355)
|++.|.+.+
T Consensus 214 l~~~l~~~~ 222 (226)
T 2hf9_A 214 VLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987655
No 291
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.74 E-value=0.0014 Score=57.04 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=24.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVI 332 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~ 332 (355)
..++|+++|.+|||||||||+|.+....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 51 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP 51 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 4578999999999999999999986643
No 292
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.71 E-value=0.00062 Score=58.11 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
...++|.+||.+|||||||||.|.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3568999999999999999998887543
No 293
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.69 E-value=0.0026 Score=61.53 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=51.9
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHH---hhcCCCcEEEEEeccCCCChhh--------HHHHHHHHhhh----CC
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWA--------TKGWLRVLSKE----YP 273 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~---~~~~~k~vILVlNK~DLvp~~~--------~~~w~~~l~~~----~p 273 (355)
....++.+|+|+|+.+........+.+++. ...++.|+++|+||+||.+... ..+-.+.+.+. ..
T Consensus 69 yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 69 LFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp HHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred hccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence 467899999999999872111123323232 2346789999999999987432 11112233332 23
Q ss_pred ceEEEeeecCCCChHHHHHHHH
Q 018454 274 SLAFHASINKSFGKGSLLSVLR 295 (355)
Q Consensus 274 ~~~f~vSa~~~~Gi~~Ll~~L~ 295 (355)
...|..||++ .++.+.+..|.
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIV 169 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHH
T ss_pred ceEEEeccCC-CcHHHHHHHHH
Confidence 4456679986 46766665543
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.65 E-value=0.0029 Score=60.88 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=51.2
Q ss_pred hhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCC-hhhHHHHHHHHhh----hC------CceEE
Q 018454 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP-AWATKGWLRVLSK----EY------PSLAF 277 (355)
Q Consensus 209 vi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp-~~~~~~w~~~l~~----~~------p~~~f 277 (355)
+.+.+|++++|+|+..+.. ...+...+. ..+.++|+||+|+.+ ........+.+.. .. ...++
T Consensus 165 v~~~~d~vl~v~d~~~~~~--~~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl 238 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVV 238 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEE
T ss_pred HHhhCCEEEEEEcCCCccc--HHHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 4578999999999853321 000111111 245688889999875 3222222233321 11 12456
Q ss_pred EeeecCCCChHHHHHHHHHHHh
Q 018454 278 HASINKSFGKGSLLSVLRQFAR 299 (355)
Q Consensus 278 ~vSa~~~~Gi~~Ll~~L~q~~~ 299 (355)
.+|+.++.|+++|++.|.++..
T Consensus 239 ~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 239 TISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999988764
No 295
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.62 E-value=0.00064 Score=70.56 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred cccceEEEEeecCCCChhHHHHHhhcc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..++|++||.+|+|||||+|+|+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Confidence 345688999999999999999999754
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0016 Score=55.90 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=36.6
Q ss_pred hhhcCCCEEEEEecCC-CCCCCcc--hHHHHHHHhh----cCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454 208 KVIDSSDVVVQVLDAR-DPQGTRC--HHLERHLKEH----CKHKHMILLLNKCDLVPAWATKGWLRVL 268 (355)
Q Consensus 208 kvi~~sDvVL~VvDar-dp~~s~~--~~l~~~L~~~----~~~k~vILVlNK~DLvp~~~~~~w~~~l 268 (355)
..+..+|++|+|+|+. ++..... ..+...+... ..+.|+++|+||+|+.+........+.+
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 3456789999999998 4321110 1122222211 1478999999999998755444444443
No 297
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.0021 Score=61.49 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=27.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCccccCC
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILFFP 336 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~ 336 (355)
.+.++|.|+|.+|||||||||+|.+.......|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p 195 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 195 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCccc
Confidence 356899999999999999999999877655444
No 298
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.53 E-value=0.0014 Score=56.82 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+.++|.++|.+|||||||||.|.+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999998875
No 299
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.49 E-value=0.0031 Score=60.56 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=52.4
Q ss_pred CCcEEEEEeccCCCChhhHHHHHHHHhhhCCceEEEeeecCCCChHHHHHHHHHHHhh----hc---cccceEEEEeecC
Q 018454 243 HKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL----KS---DKQAISVGFVGYP 315 (355)
Q Consensus 243 ~k~vILVlNK~DLvp~~~~~~w~~~l~~~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~~~----~~---~~~~i~V~~vG~p 315 (355)
.....+|++|.|+.|+...+ ... ...+.++..+..+..++..|..+|...... |. +-.+..|.|+|.+
T Consensus 79 ~~~P~IIltrg~~~peelie----~A~-~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~s 153 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEELIE----AAK-EHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDS 153 (314)
T ss_dssp TTCCCEEECTTCCCCHHHHH----HHH-HTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEEST
T ss_pred CCCCEEEEeCCCCCCHHHHH----HHH-HCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCC
Confidence 46678889999998765332 222 234445555555555555555555443211 11 1235678999999
Q ss_pred CCChhHHHHHhhcc
Q 018454 316 NVGKSSVINTLRTK 329 (355)
Q Consensus 316 NVGKSSLIN~Ll~~ 329 (355)
|+||||+.+.|++.
T Consensus 154 G~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 154 GIGKSETALELIKR 167 (314)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999874
No 300
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.49 E-value=0.0025 Score=65.55 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHHHhhhcCCCEEEEEecCCCC-CCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454 204 GELYKVIDSSDVVVQVLDARDP-QGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL 268 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDardp-~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l 268 (355)
..+...+..+|+||+|+|+.++ .......+.+.+.. .+.++++|+||+|+++..........+
T Consensus 180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 3345567889999999999875 23223333334432 357899999999999876554444433
No 301
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.48 E-value=0.0056 Score=64.68 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 196 ~~~s~ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
+|| ..+..++...+.-+|.+|+||||.......-..+.+.... .+.|.|+++||+|..
T Consensus 93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSST
T ss_pred CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEcccccc
Confidence 555 3466788889999999999999998877666666666655 489999999999974
No 302
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.00074 Score=70.35 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.7
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccC
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+..++|++||.+|||||||||+|+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 3567999999999999999999998653
No 303
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.47 E-value=0.0017 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
....|.++|.+|||||||+|.|...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999864
No 304
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.45 E-value=0.0019 Score=62.72 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFF 335 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs 335 (355)
..++|++||.+|||||||||+|.+.......
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 4578999999999999999999876555443
No 305
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.44 E-value=0.0023 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.6
Q ss_pred EEEEeecCCCChhHHHHHhhccCcccc
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKNVILF 334 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~~~~v 334 (355)
.|+|||.+|||||||||+|.+......
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~ 62 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPR 62 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCC
Confidence 789999999999999999999765433
No 306
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.44 E-value=0.0019 Score=59.19 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.6
Q ss_pred ccceEEEEeecC---------CCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYP---------NVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~p---------NVGKSSLIN~Ll~~ 329 (355)
...++|.+||.| |||||||||+|.+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 456899999999 99999999999974
No 307
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.42 E-value=0.0012 Score=63.78 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhh-cCCCcEEEEEeccCCCChhhHHHHHHHHhh---hCCceE
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSK---EYPSLA 276 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~-~~~k~vILVlNK~DLvp~~~~~~w~~~l~~---~~p~~~ 276 (355)
.+...+..++..+|+||+|+|+.+..... ..+..++... ..++++|+|+||+|+++.... +.+.+.. ....-.
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 237 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRSFKLKYPW 237 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSSSCCSSCC
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCccccccCCe
Confidence 34455667789999999999875433221 2333333331 246899999999999875321 2222221 122234
Q ss_pred EEeeecCCCChHHHH
Q 018454 277 FHASINKSFGKGSLL 291 (355)
Q Consensus 277 f~vSa~~~~Gi~~Ll 291 (355)
+.+|+.++.++++++
T Consensus 238 ~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 238 VGVVNRSQADINKNV 252 (360)
T ss_dssp EEECCCCHHHHHTTC
T ss_pred EEEEECChHHhccCC
Confidence 556777776665543
No 308
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.42 E-value=0.003 Score=55.87 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+|++.|.+..... ...+..|+++|.+|+|||||++.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 4 LAALCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345666555444322 345778899999999999999999864
No 309
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.37 E-value=0.0067 Score=57.32 Aligned_cols=99 Identities=9% Similarity=0.029 Sum_probs=49.0
Q ss_pred hcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHH---HHHHHhhhCCceEEEeeecCCCC
Q 018454 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKG---WLRVLSKEYPSLAFHASINKSFG 286 (355)
Q Consensus 210 i~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~---w~~~l~~~~p~~~f~vSa~~~~G 286 (355)
+..++++|++++.... +.++.-..++.......++++|+||+|+........ -...+...+...+|.+|++++ |
T Consensus 124 ~ara~~ll~ldePt~~--~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~ 200 (301)
T 2qnr_A 124 DNRVHCCFYFISPFGH--GLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-D 200 (301)
T ss_dssp CCCCCEEEEEECSSSS--SCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred hhhhhheeeeecCccc--CCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-c
Confidence 3445667777653211 122222244444334578999999999987543221 112222233455677899999 9
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCC
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPN 316 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pN 316 (355)
+++++..+.+.+. ..+..++||-..
T Consensus 201 v~e~f~~l~~~i~-----~~~p~avigs~~ 225 (301)
T 2qnr_A 201 EDEDFKEQTRLLK-----ASIPFSVVGSNQ 225 (301)
T ss_dssp ----CHHHHHHHH-----TTCSEECCCCCC
T ss_pred ccHHHHHHHHHhh-----cCCCceEECCCc
Confidence 9998887766553 234457777543
No 310
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.33 E-value=0.0016 Score=58.47 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++..|+|+|.+|||||||+|.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34567899999999999999999754
No 311
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.32 E-value=0.0035 Score=60.99 Aligned_cols=91 Identities=9% Similarity=0.100 Sum_probs=54.3
Q ss_pred hhhcCCCEEEEEecCCC--------CCCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChh---------------
Q 018454 208 KVIDSSDVVVQVLDARD--------PQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAW--------------- 259 (355)
Q Consensus 208 kvi~~sDvVL~VvDard--------p~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~--------------- 259 (355)
.....++.+|+|+|..+ ........+..++.. ...+.|+|||+||+||....
T Consensus 202 ~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y 281 (354)
T 2xtz_A 202 HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY 281 (354)
T ss_dssp GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTC
T ss_pred HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccccccc
Confidence 35688999999999862 111222233333322 13578999999999984211
Q ss_pred -----------hHHHH-HHHHhh-----------hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 260 -----------ATKGW-LRVLSK-----------EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 260 -----------~~~~w-~~~l~~-----------~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
....| ...+.. ......+.+||+++.|+.++++.+.+..
T Consensus 282 ~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 282 QPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence 11122 111111 1122346789999999999998876544
No 312
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.30 E-value=0.0013 Score=65.38 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.2
Q ss_pred cccceEEEEeecCCCChhHHHHHhhccC
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+..++|+++|.+|+|||||+|+|+...
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 3456899999999999999999998653
No 313
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.28 E-value=0.0012 Score=66.41 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..++|++||.+|+|||||+|+|+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56799999999999999999999864
No 314
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.27 E-value=0.0021 Score=61.84 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhh------ccCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLR------TKNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll------~~~~~~vs~iPGtT 341 (355)
.....|+++|.||+|||||+|.|. +.++..++..|++|
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 456788999999999999999996 34556666667665
No 315
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.26 E-value=0.0036 Score=62.31 Aligned_cols=85 Identities=8% Similarity=0.092 Sum_probs=37.3
Q ss_pred CCCEEEEEecCC-CCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHh---hhCCceEEEeeecCCCCh
Q 018454 212 SSDVVVQVLDAR-DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS---KEYPSLAFHASINKSFGK 287 (355)
Q Consensus 212 ~sDvVL~VvDar-dp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~---~~~p~~~f~vSa~~~~Gi 287 (355)
.+++||++++.. ..+...+..+.+.+. .+.++|+|+||+|++.......+...+. ..+...+|..|+.++.++
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v 214 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 214 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-------
T ss_pred CeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCH
Confidence 356677777654 333333323333333 4789999999999997654433322221 122344566788888888
Q ss_pred HHHHHHHHHHHh
Q 018454 288 GSLLSVLRQFAR 299 (355)
Q Consensus 288 ~~Ll~~L~q~~~ 299 (355)
++++..|.+..+
T Consensus 215 ~~~~~~l~~~iP 226 (418)
T 2qag_C 215 NKLVKKIKDRLP 226 (418)
T ss_dssp ----------CC
T ss_pred HHHHHHHHhhCC
Confidence 887777765443
No 316
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.23 E-value=0.005 Score=61.22 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
....|+|+|.+|+|||||||+|.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999999984
No 317
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.13 E-value=0.0021 Score=61.89 Aligned_cols=25 Identities=48% Similarity=0.791 Sum_probs=22.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+..|+++|.||+|||||+|.|.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567789999999999999999984
No 318
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.10 E-value=0.0034 Score=63.06 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.-|+|+|.+|+|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4456789999999999999999964
No 319
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.05 E-value=0.0052 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+..+|.|||-+||||||||+.+....
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC
Confidence 45789999999999999999998765
No 320
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.01 E-value=0.01 Score=57.53 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHhhhcCCCEEEEEecCCCC--------CCCcchHHHHHHHh-----hcCCCcEEEEEeccCCCC
Q 018454 202 IWGELYKVIDSSDVVVQVLDARDP--------QGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVP 257 (355)
Q Consensus 202 i~~el~kvi~~sDvVL~VvDardp--------~~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp 257 (355)
...........++.||+|+|..+. ....-.+...++.. ...+.|+|||+||+||..
T Consensus 174 ~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 174 ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 333334577999999999999732 11111222222221 235789999999999854
No 321
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.99 E-value=0.0065 Score=58.59 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=25.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc------cCccccCCCCCee
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT------KNVILFFPASVVW 341 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~------~~~~~vs~iPGtT 341 (355)
.....|+|+|.||||||||+|.|.. .++..+...|+.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 3567899999999999999999963 3444444444443
No 322
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.95 E-value=0.0076 Score=60.20 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEeecCCCChhHHHHHhhccC
Q 018454 308 SVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.++|||.+|+|||||||+|.+..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 38999999999999999999874
No 323
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.90 E-value=0.0087 Score=59.27 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=55.5
Q ss_pred hhhcCCCEEEEEecCCCCC--------CCcchHHHHHHHh-----hcCCCcEEEEEeccCCCChhh--------------
Q 018454 208 KVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWA-------------- 260 (355)
Q Consensus 208 kvi~~sDvVL~VvDardp~--------~s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~~-------------- 260 (355)
.....++.||+|+|..+.. ......+..++.. ...+.|+|||+||+||.....
T Consensus 236 ~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y 315 (402)
T 1azs_C 236 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEF 315 (402)
T ss_dssp GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGG
T ss_pred hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccc
Confidence 4668999999999998721 1112233333332 135689999999999843211
Q ss_pred ---------------------HHHHH-HHHhhh--------CCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 261 ---------------------TKGWL-RVLSKE--------YPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 261 ---------------------~~~w~-~~l~~~--------~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
...|. ..+... .....+.+||+++.|+..+++.+.+..
T Consensus 316 ~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 316 ARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp GTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 11121 111111 233455789999999999998876554
No 324
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.83 E-value=0.0041 Score=58.80 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
-..+|++||.+|||||||||.|.+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999999875
No 325
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.77 E-value=0.0074 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNV 331 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~ 331 (355)
-..+|+|||.+|||||||||.|.+...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346789999999999999999998664
No 326
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=95.73 E-value=0.0047 Score=62.37 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=23.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC------ccccCCCCCeeEE
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN------VILFFPASVVWYW 343 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~------~~~vs~iPGtT~~ 343 (355)
+.+.|+++|.+|+|||||+|+|.+.. .......+|+|.+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~ 62 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID 62 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEe
Confidence 46899999999999999999999765 1334556777743
No 327
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.71 E-value=0.012 Score=56.65 Aligned_cols=92 Identities=9% Similarity=0.149 Sum_probs=55.5
Q ss_pred HhhhcCCCEEEEEecCC-------CCCC-CcchHHHHHHHh-----hcCCCcEEEEEeccCCCChh--------------
Q 018454 207 YKVIDSSDVVVQVLDAR-------DPQG-TRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAW-------------- 259 (355)
Q Consensus 207 ~kvi~~sDvVL~VvDar-------dp~~-s~~~~l~~~L~~-----~~~~k~vILVlNK~DLvp~~-------------- 259 (355)
......++.||+|+|.. +... .+-.+...++.. ...+.|+||++||+||....
T Consensus 185 ~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~ 264 (327)
T 3ohm_A 185 IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 264 (327)
T ss_dssp GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCC
T ss_pred HHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhcc
Confidence 34678999999999775 2211 111222223322 22578999999999985422
Q ss_pred ----hHHHHHHH----Hhh-----hCCceEEEeeecCCCChHHHHHHHHHHH
Q 018454 260 ----ATKGWLRV----LSK-----EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (355)
Q Consensus 260 ----~~~~w~~~----l~~-----~~p~~~f~vSa~~~~Gi~~Ll~~L~q~~ 298 (355)
..+.-.++ +.. ..+...+..||+++.++..+++.+.+..
T Consensus 265 g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 265 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp SCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 11122222 211 1234456679999999999999887654
No 328
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.70 E-value=0.0078 Score=64.89 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCC
Q 018454 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (355)
Q Consensus 205 el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLv 256 (355)
++...+..+|.+|+|+|+.++.......+...+.. .+.|+|+|+||+|+.
T Consensus 114 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 114 EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 45567788999999999998765544444333333 579999999999986
No 329
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.38 E-value=0.031 Score=51.34 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=31.5
Q ss_pred cCCCEEEEEecCCCCCCC-cchHHHHHHHhhcC-C--CcEEEEEeccCCCChh
Q 018454 211 DSSDVVVQVLDARDPQGT-RCHHLERHLKEHCK-H--KHMILLLNKCDLVPAW 259 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~~-~--k~vILVlNK~DLvp~~ 259 (355)
..+|++|+|+|+.....+ .+..+.+.+..... + +|+|+|+||+|+.+..
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 478999999877542211 22344444543211 1 6999999999998754
No 330
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.30 E-value=0.016 Score=49.60 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
....++.+.+++.......+-.++++|.||+|||||+++|.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4456666666665433344567899999999999999998764
No 331
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.24 E-value=0.024 Score=49.77 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
++++.|.+.........+..|+++|.+|+||||+++.|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444333322234567889999999999999999875
No 332
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=95.02 E-value=0.011 Score=58.03 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=23.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+..++|+++|.+|+|||||+|+|.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 4568999999999999999999987
No 333
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.91 E-value=0.017 Score=52.18 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhh-----ccCccccCCCCCe
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLR-----TKNVILFFPASVV 340 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll-----~~~~~~vs~iPGt 340 (355)
.+...+.++|.+||||||++|.|. +.+++.+..-|+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~ 53 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV 53 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 345667899999999999999998 7777777666653
No 334
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.55 E-value=0.027 Score=57.28 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=25.1
Q ss_pred cceEEEEeecCCCChhHHHHHhh------ccCccccCC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR------TKNVILFFP 336 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll------~~~~~~vs~ 336 (355)
++..|+|+|.|||||||++|.|. +.+++.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45678999999999999999998 666655544
No 335
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.41 E-value=0.044 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+..|+++|.+|+|||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999988753
No 336
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.35 E-value=0.019 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|+|+|.||+|||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999764
No 337
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.32 E-value=0.024 Score=61.16 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=25.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccCCCCCe
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFFPASVV 340 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~iPGt 340 (355)
...+|++||.+|+|||||+|+|+.......+..+|.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~ 53 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE 53 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCC
Confidence 457899999999999999999997654444444443
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.25 E-value=0.023 Score=50.02 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||+|.|.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456799999999999999999874
No 339
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.25 E-value=0.02 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++|+|.+|+|||||++.|.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4457999999999999999998753
No 340
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=94.23 E-value=0.021 Score=58.36 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.9
Q ss_pred cceEEEEeecCCCChhHHHHHhh
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
+..+|++||.+|||||||+|+|+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999999997
No 341
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.19 E-value=0.044 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+..|+++|.+|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
No 342
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.94 E-value=0.028 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45567899999999999999998754
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.91 E-value=0.053 Score=51.99 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.|.....++........+.-||++|.+|+|||||++.|.+.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444445554333455678999999999999999998653
No 344
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=93.70 E-value=0.022 Score=57.03 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+..+.|+++|.+|+|||||+|+|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4568999999999999999999975
No 345
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.67 E-value=0.035 Score=48.50 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|+++|.+|+|||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4556899999999999999999753
No 346
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.62 E-value=0.22 Score=48.46 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.1
Q ss_pred HHHHhhhcCCCEEEEEecCCC
Q 018454 204 GELYKVIDSSDVVVQVLDARD 224 (355)
Q Consensus 204 ~el~kvi~~sDvVL~VvDard 224 (355)
++.+..+..+|+|++|+|+.+
T Consensus 91 ~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 91 NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp HHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHhCCEEEEEEECCC
Confidence 445567889999999999985
No 347
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=93.54 E-value=0.029 Score=54.66 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=19.5
Q ss_pred EEEEeecCCCChhHHHHHhh
Q 018454 308 SVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll 327 (355)
.|+++|.+|+|||||+|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999998
No 348
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.42 E-value=0.041 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.0
Q ss_pred ceEEEEeecCCCChhHHHHHh
Q 018454 306 AISVGFVGYPNVGKSSVINTL 326 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~L 326 (355)
+--++++|.+|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 445799999999999999953
No 349
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=93.36 E-value=0.038 Score=56.46 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=22.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..+|+++|.+|+|||||+|+|+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4578999999999999999999863
No 350
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.23 E-value=0.048 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|+++|.+|+|||||.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998764
No 351
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.19 E-value=0.043 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.++-.++|+|.+|+|||||++.|.+-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34567899999999999999999863
No 352
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.17 E-value=0.035 Score=49.54 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.5
Q ss_pred cceEEEEeecCCCChhHHHHHhh-cc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR-TK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll-~~ 329 (355)
.+-.++|+|.+|+|||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34567999999999999999999 64
No 353
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.15 E-value=0.06 Score=49.07 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34467999999999999999998853
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.09 E-value=0.095 Score=43.65 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.++.++.+.+.+.. .....+.|+|.||+|||++++++...
T Consensus 26 g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 555555555555432 33456789999999999999998764
No 355
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.08 E-value=0.13 Score=46.86 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=31.1
Q ss_pred cCCCEEEEEecCCCCCCC-cchHHHHHHHhhcC---CCcEEEEEeccCCCCh
Q 018454 211 DSSDVVVQVLDARDPQGT-RCHHLERHLKEHCK---HKHMILLLNKCDLVPA 258 (355)
Q Consensus 211 ~~sDvVL~VvDardp~~s-~~~~l~~~L~~~~~---~k~vILVlNK~DLvp~ 258 (355)
..+|++|+|+|+..+..+ .+..+.+.+..... .+|+++|+||+|+.+.
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 478999999877554322 22345555554211 2589999999999753
No 356
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.99 E-value=0.046 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4457999999999999999998754
No 357
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.94 E-value=0.047 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456999999999999999998753
No 358
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.88 E-value=0.046 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
...|+|+|.||+||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999653
No 359
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.79 E-value=0.065 Score=46.73 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|+++|.||+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999875
No 360
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.77 E-value=0.055 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.3
Q ss_pred ceEEEEeecCCCChhHHHHHhh
Q 018454 306 AISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
+..|+|+|.||+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 361
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.75 E-value=0.059 Score=49.01 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999998854
No 362
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.74 E-value=0.058 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+..|+++|.+|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45678899999999999999999874
No 363
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.60 E-value=0.064 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||++.|.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4557899999999999999999874
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.48 E-value=0.047 Score=48.81 Aligned_cols=31 Identities=13% Similarity=-0.019 Sum_probs=24.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCccccCCC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVILFFPA 337 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs~i 337 (355)
+-.++++|.+|+|||||++.|.+. ....+.+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 345799999999999999999987 5544444
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.43 E-value=0.052 Score=49.64 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.9
Q ss_pred eEEEEeecCCCChhHHHHHhhccC
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
-.++++|.+|+|||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 346999999999999999998853
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.33 E-value=0.077 Score=45.44 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.++..|+|+|.||+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567789999999999999999864
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.32 E-value=0.066 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4457999999999999999999853
No 368
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.30 E-value=0.061 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457999999999999999998753
No 369
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.28 E-value=0.062 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999998853
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.23 E-value=0.077 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|+++|.+|+|||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999763
No 371
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.23 E-value=0.075 Score=49.06 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34467999999999999999999853
No 372
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.23 E-value=0.057 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3346899999999999999998853
No 373
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.18 E-value=0.067 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456999999999999999998853
No 374
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.16 E-value=0.2 Score=46.80 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+.-|.++|.||+||||+.+.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34677899999999999999999753
No 375
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.09 E-value=0.079 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..|+++|.||+||||+...|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999999753
No 376
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.08 E-value=0.068 Score=48.28 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457999999999999999999854
No 377
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.97 E-value=0.092 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+..|+|+|.|++||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 378
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.97 E-value=0.078 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4456999999999999999998853
No 379
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.96 E-value=0.13 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.5
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.++-.++++|.+|+||||+++.|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999999863
No 380
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.96 E-value=0.081 Score=48.42 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||++.|.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345799999999999999999985
No 381
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.94 E-value=0.074 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3456999999999999999998853
No 382
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.90 E-value=0.085 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999998853
No 383
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.89 E-value=0.083 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4457999999999999999999864
No 384
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.87 E-value=0.088 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.2
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||++.|.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 445799999999999999999985
No 385
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.85 E-value=0.071 Score=51.29 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=24.0
Q ss_pred ceEEEEeecCCCChhHHHHHhhccCcccc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKNVILF 334 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v 334 (355)
+-.++++|.+|+|||||++.|.+...+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45789999999999999999998654443
No 386
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.83 E-value=0.076 Score=48.34 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457999999999999999998853
No 387
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.78 E-value=0.08 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457999999999999999998853
No 388
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.74 E-value=0.096 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||++.|.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4556799999999999999999874
No 389
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.72 E-value=0.18 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=20.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.....+.|.|.||+|||++..+|..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999986654
No 390
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.71 E-value=0.056 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.+++||.+|+|||||++.|.+--
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34567999999999999999998853
No 391
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.71 E-value=0.093 Score=48.53 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4457999999999999999998753
No 392
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.69 E-value=0.13 Score=47.57 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
++++|.||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.68 E-value=0.1 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|..|+|||||++.|.+.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45567999999999999999998754
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.66 E-value=0.16 Score=45.68 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
++++|.||+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.63 E-value=0.17 Score=47.85 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.+++||.+|+||||+++.|.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4556899999999999999999763
No 396
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.071 Score=52.24 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCCCEEEEEecCCCCCCCcchHHHHHHHh---hcCCCcEEEEEeccCC
Q 018454 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDL 255 (355)
Q Consensus 201 ri~~el~kvi~~sDvVL~VvDardp~~s~~~~l~~~L~~---~~~~k~vILVlNK~DL 255 (355)
...+++...+.++|+|++|+|+.+|... ...+...|.. ....+|.++++||+|.
T Consensus 138 ~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 138 GRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 3557788889999999999999987532 2233333332 1235789999999995
No 397
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.56 E-value=0.19 Score=43.39 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhhhccc-cceEEEEeecCCCChhHHHHHhhc
Q 018454 287 KGSLLSVLRQFARLKSDK-QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~~~~-~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
...+++.+.+++...... .+..+++.|.||+|||+|+.+|..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344666666666533221 126789999999999999998875
No 398
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.42 E-value=0.088 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457999999999999999999854
No 399
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.38 E-value=0.088 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4457999999999999999998853
No 400
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.38 E-value=0.21 Score=45.28 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+..|.++|.||+||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45677899999999999999998753
No 401
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=91.36 E-value=0.093 Score=55.25 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
...+|+++|.+|+|||||+|+|+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999984
No 402
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.29 E-value=0.099 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||+++|.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 446799999999999999999874
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.29 E-value=0.097 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||+|+|.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346799999999999999999975
No 404
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.27 E-value=0.089 Score=50.86 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++++|.+|+|||||+|+|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3456799999999999999999874
No 405
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.26 E-value=0.11 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+.-|+|+|..|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45677899999999999999999875
No 406
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=91.19 E-value=0.17 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..++|+++|.+|+|||||+|+|.+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 45689999999999999999999863
No 407
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.18 E-value=0.16 Score=50.56 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=36.8
Q ss_pred EEEEEecCCCCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHHhh
Q 018454 215 VVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK 270 (355)
Q Consensus 215 vVL~VvDardp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l~~ 270 (355)
+|++|+|+..++...+..+.+.|. .+.++|+|+||+|.++..........+..
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 578899998877766655555553 57899999999999987766555555543
No 408
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.16 E-value=0.11 Score=45.96 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred cceEEEEeecCCCChhHHHHHhh
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
.+-.++++|.+|+|||||++.|.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44567999999999999999887
No 409
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.16 E-value=0.1 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.0
Q ss_pred ceEEEEeecCCCChhHHHHHhhc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
...|.++|.||+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34578999999999999999974
No 410
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.06 E-value=0.1 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4456999999999999999998854
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.05 E-value=0.12 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.8
Q ss_pred cceEEEEeecCCCChhHHHHHhh
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
.+..|+++|.+|+|||||.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999998
No 412
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.92 E-value=0.074 Score=55.15 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEeecCCCChhHHHHHhhccC
Q 018454 309 VGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
|++||.+|+|||||+|+|.+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 7999999999999999999863
No 413
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.91 E-value=0.12 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++++|.+|+||||++++|.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445689999999999999999986
No 414
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.90 E-value=0.19 Score=41.80 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.+..+..+.+.+.. .....+.|+|.||+|||+|+..+...
T Consensus 26 g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 26 GRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 555555555554432 23456789999999999999998764
No 415
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.88 E-value=0.13 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..|+|+|.||+||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 416
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.83 E-value=0.11 Score=48.22 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred eEEEEeecCCCChhHHHHHhhccC
Q 018454 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
-.++++|.+|+|||||++.|.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 356999999999999999999864
No 417
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.82 E-value=0.18 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+..|+|+|.|||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999976
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.68 E-value=0.27 Score=41.84 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
|.++.++.|.+.+... ....+.|.|.||+|||+++..+..
T Consensus 21 g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 21 GQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp SCHHHHHHHHHHHHTT---CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHH
Confidence 5666777777666432 222389999999999999998875
No 419
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.65 E-value=0.22 Score=45.55 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEeecCCCChhHHHHHhhcc
Q 018454 309 VGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 309 V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|+|+|.||+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 420
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.60 E-value=0.22 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..|.|+|.||+|||||..+|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345899999999999999999764
No 421
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.55 E-value=0.28 Score=49.88 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.1
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+-.++|||.+|+||||||+.|.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34567899999999999999998763
No 422
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.53 E-value=0.12 Score=48.52 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.6
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|..|+|||||++.|.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3456999999999999999999854
No 423
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.42 E-value=0.16 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.4
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.....|+|+|.||+||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999975
No 424
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.40 E-value=0.15 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.|+++|.+|+||||+++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 355789999999999999999975
No 425
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.40 E-value=0.11 Score=52.78 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=53.5
Q ss_pred HHHHHHHhhhc--CCCEEEEEecCCCCCCCcchHHHHHHHhhcCCCcE-EEEEeccCCCChhh-HHHHHHHHhhhCCc--
Q 018454 201 RIWGELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLNKCDLVPAWA-TKGWLRVLSKEYPS-- 274 (355)
Q Consensus 201 ri~~el~kvi~--~sDvVL~VvDardp~~s~~~~l~~~L~~~~~~k~v-ILVlNK~DLvp~~~-~~~w~~~l~~~~p~-- 274 (355)
.++.++..+.+ .+|.+|+|+|+..... ...+.+.+.+ ..|+ ++|+||+|...... ...+...+. .|.
T Consensus 200 ~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~---~~~i~gvVlNK~D~~~~~g~~l~~~~~~g--~PI~f 272 (504)
T 2j37_W 200 SLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD---KVDVASVIVTKLDGHAKGGGALSAVAATK--SPIIF 272 (504)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH---HHCCCCEEEECTTSCCCCTHHHHHHHHHC--CCEEE
T ss_pred hHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh---hcCceEEEEeCCccccchHHHHHHHHHhC--CCeEE
Confidence 34444433322 7899999999987542 2233333332 2564 89999999875432 122222221 121
Q ss_pred --------------eEEEeeecCCCC-hHHHHHHHHHH
Q 018454 275 --------------LAFHASINKSFG-KGSLLSVLRQF 297 (355)
Q Consensus 275 --------------~~f~vSa~~~~G-i~~Ll~~L~q~ 297 (355)
..+.+|+..|.| +.+|++.+.+.
T Consensus 273 ig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 273 IGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 012368888999 99999988766
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.33 E-value=0.28 Score=44.61 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHhhh----------ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK----------SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~----------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.++.++.|.+++... .-..+..+.|.|.||+|||+|..+|...
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5666666665554321 1134556899999999999999999764
No 427
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.29 E-value=0.16 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+..|.|+|.||+||||+.+.|.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999865
No 428
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.24 E-value=0.15 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+-.|+++|.+|+|||||+++|.+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999976
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.18 E-value=0.3 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.1
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|.|.|.||+|||++..+|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999998763
No 430
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.14 E-value=0.26 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+..++|+|.+|+||||++|+|.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345899999999999999999873
No 431
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=90.13 E-value=0.22 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.7
Q ss_pred cceEEEEeecCCCChhHHHHHhh
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
+-.-|+++|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44567899999999999999776
No 432
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.06 E-value=0.32 Score=45.25 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHhhh----------ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK----------SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~----------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.++.++.|.+..... .-..+..|.|.|.||+|||+|.++|.+.
T Consensus 19 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 19 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 5566666555544321 1134456899999999999999999864
No 433
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.05 E-value=0.32 Score=42.31 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+++.|..+... .....+.|.|.||+|||+|+.+|...
T Consensus 37 ~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566666666542 23567899999999999999998753
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.89 E-value=0.33 Score=41.65 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.|.+..++.|.+.+... ..+-.+.|.|.||+|||||+..+...
T Consensus 26 ~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 26 VGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35666677776665421 22235789999999999999998753
No 435
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.79 E-value=0.3 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.+++||.+|+||||+++.|.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4567899999999999999999763
No 436
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.71 E-value=0.19 Score=47.62 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHhhh--ccccceEEEEeecCCCChhHHHHHhhccC
Q 018454 286 GKGSLLSVLRQFARLK--SDKQAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~--~~~~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
|-+.+++.|....... .....-.++|+|.||+|||||++.|.+.-
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4445555554443221 11122347899999999999999998754
No 437
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.55 E-value=0.2 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.2
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+..|+|+|.||+||||+...|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999999975
No 438
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.05 E-value=0.2 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEeecCCCChhHHHHHhhc
Q 018454 308 SVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.|+++|.||+||||+-..|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999865
No 439
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.02 E-value=0.29 Score=46.12 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHhhh-ccccce--EEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK-SDKQAI--SVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~-~~~~~i--~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.+..++.|...+... ....+. .+.|+|.||+|||||++.+.+.
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4444455444444321 112234 6899999999999999998764
No 440
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.00 E-value=0.17 Score=49.31 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3456999999999999999999854
No 441
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.92 E-value=0.42 Score=43.19 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+.-.++..|+.++... .+.-.+.|.|.||+||||+..+|.+
T Consensus 39 ~~~~~f~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 39 IEFITFLGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CCHHHHHHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHH
Confidence 45556677777776531 1223478999999999988877764
No 442
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.92 E-value=0.39 Score=39.51 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
..+.+.+..+. .....|.+.|-||+|||++..+|-..
T Consensus 14 ~~l~~~~~~~~-----~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 14 QEMNREVEAAA-----KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHH-----TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34444444443 23456899999999999999998754
No 443
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.87 E-value=0.23 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.4
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++++|.||+|||||++.|.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344578999999999999999884
No 444
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.87 E-value=0.17 Score=49.19 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456899999999999999998753
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.80 E-value=0.23 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
....|.|+|.||+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999865
No 446
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.64 E-value=0.42 Score=39.35 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
....|.+.|-||+|||++..+|-..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4467899999999999999998653
No 447
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.62 E-value=0.23 Score=49.18 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++|+|.+|+|||||+++|++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 344679999999999999999986
No 448
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.59 E-value=0.21 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
+-.|+++|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999965
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.55 E-value=0.25 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+.-|.|.|.||+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5677899999999999999999764
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.55 E-value=0.34 Score=45.34 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 285 FGKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.|.+..++.|.+.+... ....+-.+.|+|.||+|||||++.+.+.
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35666666666554321 1233457899999999999999998864
No 451
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.51 E-value=0.18 Score=49.17 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3456899999999999999998854
No 452
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.36 E-value=0.24 Score=41.97 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEEeecCCCChhHHHHHhhc
Q 018454 308 SVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 308 ~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
-.+|+|..|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999854
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.30 E-value=0.27 Score=45.60 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.3
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
....|+|+|.||+||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999999974
No 454
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.27 E-value=0.26 Score=45.42 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+--++++|.||+|||||++.|.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445689999999999999998764
No 455
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.24 E-value=0.51 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.8
Q ss_pred cceEEEEeecCCCChhHHHHHhh
Q 018454 305 QAISVGFVGYPNVGKSSVINTLR 327 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll 327 (355)
++..|.++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46788999999999999999987
No 456
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.22 E-value=0.5 Score=44.41 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhc
Q 018454 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 288 ~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+++.+.+++..........++|.|.||+|||+|..+|..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 34555566666533222246789999999999999998864
No 457
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.15 E-value=0.24 Score=50.78 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45567999999999999999999854
No 458
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.10 E-value=0.5 Score=43.25 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHhhh---------ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK---------SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~---------~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.+..++.|.+..... .......|.|.|.||+|||++.++|.+.
T Consensus 25 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 25 GQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5666666666654321 0123467899999999999999999764
No 459
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.09 E-value=0.23 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.5
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45568999999999999999999853
No 460
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.02 E-value=0.24 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3456899999999999999998853
No 461
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.02 E-value=0.26 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..|.++|.||+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999754
No 462
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.02 E-value=0.2 Score=56.43 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+.+-+|++||.+|+|||||++.|.+-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 35668999999999999999999984
No 463
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.00 E-value=0.35 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++|+|.+||||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999998864
No 464
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.97 E-value=0.19 Score=44.25 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+|+..|=..|.. .-..+-.++++|.||+|||||+..|...
T Consensus 8 tG~~~LD~~l~g-----gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 8 TGSKELDKLLQG-----GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CSCHHHHHHTTT-----SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCChHHHHhhcC-----CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 465555444421 1124456789999999999999999863
No 465
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.95 E-value=0.26 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999999864
No 466
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.94 E-value=0.74 Score=42.55 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=39.5
Q ss_pred hhcCCCEEEEEecCC-CCCCCcchHHHHHHHhhcCCCcEEEEEeccCCCChhhHHHHHHHH
Q 018454 209 VIDSSDVVVQVLDAR-DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVL 268 (355)
Q Consensus 209 vi~~sDvVL~VvDar-dp~~s~~~~l~~~L~~~~~~k~vILVlNK~DLvp~~~~~~w~~~l 268 (355)
.+..+.+.++++|.. .++...+..+.+.+.. ..++|+|+||+|.+...........+
T Consensus 108 ~iaRal~~lllldep~~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~~e~~~~k~~i 165 (270)
T 3sop_A 108 PDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTLEEKSEFKQRV 165 (270)
T ss_dssp CCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCHHHHHHHHHHH
T ss_pred hhheeeeeeEEEecCCCcCCHHHHHHHHHHHh---cCcEEEEEeccccCCHHHHHHHHHHH
Confidence 356678889999843 5665555555555553 38999999999999876655444443
No 467
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.82 E-value=0.25 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34457999999999999999998753
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.67 E-value=0.23 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.++++|.+|+|||||++.|.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45568999999999999999999854
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.65 E-value=0.68 Score=45.05 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 287 KGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 287 i~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
++.|.+.+.+.+... .......|+++|.||+||||+...|.+.
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 445555444443322 1233456899999999999999988763
No 470
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.61 E-value=0.37 Score=45.98 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 289 ~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.|...|..... ...+-.+++.|.||+|||++++.+...
T Consensus 31 ~i~~~L~~~i~---~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 31 RIFLPIYDSLM---SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHHHHH---TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444444432 346678899999999999999998764
No 471
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.58 E-value=0.26 Score=47.87 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.3
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3456899999999999999998853
No 472
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.52 E-value=0.27 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3456999999999999999999854
No 473
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.51 E-value=0.25 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.+++||.+|+|||||++.|.+--
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45678999999999999999999854
No 474
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.51 E-value=0.21 Score=51.29 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.+++||.+|+|||||++.|.+--
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45678999999999999999999854
No 475
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.47 E-value=0.27 Score=47.98 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.9
Q ss_pred ceEEEEeecCCCChhHHHHHhhcc
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+-.++++|.+|+|||||++.|.+-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 345689999999999999999874
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.41 E-value=0.47 Score=43.23 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.2
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+..+.|.|.||+|||++..+|...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999998753
No 477
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.36 E-value=0.39 Score=49.03 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=24.7
Q ss_pred ccceEEEEeecCCCChhHHHHHhhccCcccc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTKNVILF 334 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~v 334 (355)
..+-.+++||..|+|||||++.|.+......
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~ 53 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 3455679999999999999999998654433
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.31 E-value=0.33 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=21.8
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+..|+++|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566789999999999999999875
No 479
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.07 E-value=0.27 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.|+++|.+|+|||||++.|.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4556899999999999999999874
No 480
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.04 E-value=0.33 Score=42.63 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
-...|+++|.+++||||+-+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999998764
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.03 E-value=0.34 Score=45.09 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.6
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
+.+.-+.+.|.||+|||+|..+|-..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45567788899999999999998753
No 482
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.99 E-value=0.35 Score=43.67 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.....|++.|.|++||||+-+.|...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998763
No 483
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.89 E-value=0.75 Score=41.66 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.8
Q ss_pred cccceEEEEeecCCCChhHHHHHhhcc
Q 018454 303 DKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 303 ~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
......+.|.|.||+|||+|..+|...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678899999999999999998764
No 484
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.87 E-value=0.36 Score=41.76 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=20.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.+.++|.||+|||||++.|..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344578999999999999999986
No 485
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.83 E-value=0.75 Score=43.32 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.++.++.|...+... ....+-.+.|.|.||+|||+|++.+...
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4455555444443321 1233457899999999999999998764
No 486
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.82 E-value=0.26 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.6
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
.+-.+++||.+|+|||||++.|.+--
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45578999999999999999999853
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.77 E-value=0.32 Score=44.19 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred ccceEEEEeecCCCChhHHHHHhhcc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.++.-|.|.|.+|+||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678899999999999999999865
No 488
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.77 E-value=0.36 Score=45.24 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHH-hhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFA-RLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~-~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|-+...+.|.+.. .. .+.+. +.|+|.+|+||||+++.|.+.
T Consensus 18 g~~~~~~~l~~~~~~~--~~~~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQP--RDLPH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp SCHHHHHHHHTTTTCT--TCCCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHhhC--CCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 4556666666654 21 12233 899999999999999998773
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.63 E-value=0.28 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred eEEEEeecCCCChhHHHHHhhc
Q 018454 307 ISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 307 i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
-.++++|.+|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3468999999999999999986
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.61 E-value=0.43 Score=49.51 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=24.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccCccccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKNVILFF 335 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~~~~vs 335 (355)
.+-.++++|.+|+|||||++.|.+......+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 3456799999999999999999986544433
No 491
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.50 E-value=0.36 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++++|.||+|||||++.|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445679999999999999999986
No 492
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.36 E-value=0.24 Score=47.90 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3456899999999999999998854
No 493
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.34 E-value=0.27 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCChhHHHHHhhcc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.+-.++|+|.+|+|||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567899999999999999999864
No 494
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.28 E-value=0.67 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhc
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
.+-.++++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 455689999999999999998875
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.27 E-value=0.38 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.7
Q ss_pred cceEEEEeecCCCChhHHHHHhhccC
Q 018454 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 305 ~~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
++-.++++|.+|+|||||++.|.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45567999999999999999998864
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.23 E-value=0.37 Score=49.15 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=0.0
Q ss_pred ccceEEEEeecCCCChhHHHHHhhc
Q 018454 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (355)
Q Consensus 304 ~~~i~V~~vG~pNVGKSSLIN~Ll~ 328 (355)
..+-.+++||..|+|||||++.|.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
No 497
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.21 E-value=0.54 Score=44.03 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHhhh-ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~-~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.+..++.|.+.+... ....+..+.|.|.||+||||+++.+...
T Consensus 23 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 23 HREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp TCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5566666666555322 1234557899999999999999998753
No 498
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.03 E-value=0.68 Score=43.16 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHhhh--ccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 286 GKGSLLSVLRQFARLK--SDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 286 Gi~~Ll~~L~q~~~~~--~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
|.+.+++.|...+... .......|.|.|.||+|||+|..+|...
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5556666655555432 1223456899999999999999999654
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.72 E-value=0.77 Score=42.31 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHhhhccccceEEEEeecCCCChhHHHHHhhcc
Q 018454 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (355)
Q Consensus 285 ~Gi~~Ll~~L~q~~~~~~~~~~i~V~~vG~pNVGKSSLIN~Ll~~ 329 (355)
.|.+..++.|.+.+.. +-.+.+.|.+++|||||++.+...
T Consensus 15 ~gR~~el~~L~~~l~~-----~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 15 FDREEESRKLEESLEN-----YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSCHHHHHHHHHHHHH-----CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc-----CCeEEEECCCcCCHHHHHHHHHHH
Confidence 4667777777666542 135789999999999999998864
No 500
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.71 E-value=0.21 Score=48.27 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCChhHHHHHhhccC
Q 018454 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (355)
Q Consensus 306 ~i~V~~vG~pNVGKSSLIN~Ll~~~ 330 (355)
+-.++++|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456899999999999999998854
Done!