Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>018455
MQGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYT
QFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLV
QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL
DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL
NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF
YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  018455
        (355 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129515 - symbol:PDS3 "phytoene desaturase 3" ...   145  5.6e-07   1


>TAIR|locus:2129515 [details] [associations]
            symbol:PDS3 "phytoene desaturase 3" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA;TAS] [GO:0009536 "plastid" evidence=IEA]
            [GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016705
            "oxidoreductase activity, acting on paired donors, with
            incorporation or reduction of molecular oxygen" evidence=IEA]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0010155 "regulation of proton
            transport" evidence=RCA] [GO:0046777 "protein autophosphorylation"
            evidence=RCA] [GO:0016120 "carotene biosynthetic process"
            evidence=IDA] [GO:0016166 "phytoene dehydrogenase activity"
            evidence=IDA] UniPathway:UPA00803 InterPro:IPR002937
            InterPro:IPR014102 Pfam:PF01593 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:Z97335 EMBL:AL161538 GO:GO:0009941
            GO:GO:0009534 GO:GO:0016117 GO:GO:0016705 GO:GO:0009509
            GO:GO:0016166 EMBL:L16237 EMBL:AF360196 EMBL:AY040007
            IPI:IPI00523820 PIR:F71403 RefSeq:NP_193157.1 UniGene:At.247
            ProteinModelPortal:Q07356 SMR:Q07356 STRING:Q07356 PaxDb:Q07356
            PRIDE:Q07356 EnsemblPlants:AT4G14210.1 GeneID:827061
            KEGG:ath:AT4G14210 TAIR:At4g14210 eggNOG:COG3349
            HOGENOM:HOG000150110 InParanoid:Q07356 KO:K02293 PhylomeDB:Q07356
            ProtClustDB:PLN02612 Genevestigator:Q07356 TIGRFAMs:TIGR02731
            Uniprot:Q07356
        Length = 566

 Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 70/357 (19%), Positives = 146/357 (40%)

Query:     4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
             F+  + N+ +L  ELGI     W + +  ++      EF  F   + LP PL  ++    
Sbjct:   149 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILR 208

Query:    61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
                 L   +++  ++ L+ A++            D ++ +E  ++ G  ER+   V   +
Sbjct:   209 NNEMLTWPEKIKFAIGLLPAMV---GGQAYVEAQDGLSVKEWMEKQGVPERVTDEVFIAM 265

Query:   120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
              +   F   ++ S    L I     L  +    + +  G   E++  P +D +R+ G E 
Sbjct:   266 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEV 324

Query:   180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
                 R+     +++    S ++    T    A V A  +  L+ L+ +        F K+
Sbjct:   325 QLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLLPDPWK-EIPYFKKL 383

Query:   240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
               L  + V++V +WFD+K+   N  +       +L   + D++    E+ D + ++++  
Sbjct:   384 DKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLELV 441

Query:   300 FYHANELMPLKDDQVVAKAVSYLSKCIKDF-----STATVMDHKIRRFPKSLTHFFP 351
             F  A E +   D  ++   +  L K   D      S A ++ + + + P+S+    P
Sbjct:   442 FAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIP 498


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      355       355   0.00080  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  253 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.44u 0.10s 28.54t   Elapsed:  00:00:01
  Total cpu time:  28.44u 0.10s 28.54t   Elapsed:  00:00:01
  Start:  Sat May 11 15:16:15 2013   End:  Sat May 11 15:16:16 2013

Back to top