BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018455
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus
(strain PCC 7942) GN=zds PE=3 SV=1
Length = 481
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 22/272 (8%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ---YSEEGLEV-----EFPIFQDLNQLPTPLG 55
F++ + N+F+L+ ++G F + A + +G EV FPI N L
Sbjct: 57 FFFNYANLFALMRKVG--AFENLLPKAHTHTFINKGGEVGELDFRFPIGAPFNGLKAFFT 114
Query: 56 TLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNV 115
T T +L L + PL+ ++D++ R D I+ + F+ G SE + +
Sbjct: 115 TSQLTWLDKLQNALALGTSPLVRGILDYEGAMKIIRALDRISFADWFRSHGGSEGSLKRM 174
Query: 116 IGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR 175
P+ F E SA L + + + A + L G+ E + +P +D ++ R
Sbjct: 175 WNPIAYALGFIDTENISARCMLTV-FQMFAAKTEASKLNLLAGSPAEYLHKPILDYIQAR 233
Query: 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAV--------VLAVGISTLQELIKN 227
G RRV + Y E VV G + AV + A + +Q L+
Sbjct: 234 GATLHLRRRVREIEYTETNG--QTVVTGLQIADGDAVERVEADVYLAACDVPGIQRLLPE 291
Query: 228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVT 259
+ EF + L ++ V +V+L FD VT
Sbjct: 292 A-WRKWSEFDNIYKLDAVPVATVQLRFDGWVT 322
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 144/358 (40%), Gaps = 18/358 (5%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
F+ + N+ +L ELGI W + + ++ EF F + LP PL ++
Sbjct: 149 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILR 208
Query: 63 SRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGP 118
+ + LT + I V + Y D ++ +E ++ G ER+ V
Sbjct: 209 NN----EMLTWPEKIKFAIGLLPAMVGGQAYVEAQDGLSVKEWMEKQGVPERVTDEVFIA 264
Query: 119 LVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 178
+ + F ++ S L I L + + + G E++ P +D +R+ G E
Sbjct: 265 MSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGE 323
Query: 179 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 238
R+ +++ S ++ T A V A + L+ L+ + F K
Sbjct: 324 VQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLLPDP-WKEIPYFKK 382
Query: 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA 298
+ L + V++V +WFD+K+ N + +L + D++ E+ D + ++++
Sbjct: 383 LDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSNLLSVYADMSLTCKEYYDPNRSMLEL 440
Query: 299 DFYHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
F A E + D ++ + L K D S A ++ + + + P+S+ P
Sbjct: 441 VFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIP 498
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/358 (18%), Positives = 146/358 (40%), Gaps = 16/358 (4%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
F+ + N+ +L ELGI W + + ++ EF F LP PL +
Sbjct: 167 FFGAYPNMQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEALPAPLNGILAILK 226
Query: 61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
L +++ ++ L+ A++ + A D I+ ++ ++ G +R+ V +
Sbjct: 227 NNEMLTWPEKVKFAIGLLPAMLGGQSYVEA---QDGISVKDWMRKQGVPDRVTDEVFIAM 283
Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
+ F ++ S L I L + + + G E++ P ++ + ++G +
Sbjct: 284 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQV 342
Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
R+ +E+ ++ T A V A + + L+ F K+
Sbjct: 343 RLNSRIKKIELNEDGSVKCFILNDGSTIEGDAFVFATPVDIFKLLLPED-WKEIPYFQKL 401
Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
L + V++V +WFD+K+ N S+ L + D++ E+ D + ++++
Sbjct: 402 EKLVGVPVINVHIWFDRKLK--NTSDNLLFSRSPLLSVYADMSVTCKEYYDPNKSMLELV 459
Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCI-----KDFSTATVMDHKIRRFPKSLTHFFPG 352
F A E + D +++ + L+K D S A ++ + + + P+S+ PG
Sbjct: 460 FAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPG 517
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 16/357 (4%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
F+ + NI +L ELGI W + + ++ EF F LP PL ++
Sbjct: 161 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILR 220
Query: 61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
L +++ +L L+ A++ D T E K+ G +R+ V +
Sbjct: 221 NNEMLTWPEKVKFALGLLPAMV---GGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAM 277
Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
+ F ++ S L I L + + + G E++ P +D +R+ G E
Sbjct: 278 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEV 336
Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
R+ + + + + A V A + L+ L+ F K+
Sbjct: 337 RLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQE-WKEISYFKKL 395
Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
L + V++V +WFD+K+ N + SL + D++ E+ D + ++++
Sbjct: 396 EKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELV 453
Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCI-----KDFSTATVMDHKIRRFPKSLTHFFP 351
F A E + D +++ + L+K D S A ++ + + + P+S+ P
Sbjct: 454 FAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIP 510
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 16/357 (4%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
F+ + NI +L ELGI W + + ++ EF F LP PL ++
Sbjct: 161 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILR 220
Query: 61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
L +++ +L L+ A++ D T E K+ G +R+ V +
Sbjct: 221 NNEMLTWPEKVKFALGLLPAMV---GGQAYVEAQDGFTVSEWMKKQGVPDRVNDEVFIAM 277
Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
+ F ++ S L I L + + + G E++ P +D +R+ G E
Sbjct: 278 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEV 336
Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
R+ + + + + A V A + L+ L+ F K+
Sbjct: 337 RLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQE-WKEISYFKKL 395
Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
L + V++V +WFD+K+ N + SL + D++ E+ D + ++++
Sbjct: 396 EKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLELV 453
Query: 300 FYHANELMPLKDDQVVAKAVSYLSKCI-----KDFSTATVMDHKIRRFPKSLTHFFP 351
F A E + D +++ + L+K D S A ++ + + + P+S+ P
Sbjct: 454 FAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIP 510
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/358 (20%), Positives = 141/358 (39%), Gaps = 18/358 (5%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
F+ + NI +L EL I+ W + + ++ EF F LP P+ ++
Sbjct: 153 FFGAYPNIQNLFGELRIEDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPINGIWAI-- 210
Query: 63 SRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGP 118
L + LT + I V + Y D +T E K+ G +R+ V
Sbjct: 211 --LRNNEMLTWPEKVKFAIGLLPAMVGGQPYVEAQDGLTVSEWMKKQGVPDRVNDEVFIA 268
Query: 119 LVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 178
+ + F ++ S L I L + + + G E++ P +D +R+RG E
Sbjct: 269 MSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGE 327
Query: 179 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 238
R+ + + + + A V A + + L+ F K
Sbjct: 328 VRLNSRIKKIELNPDGTVKHFALSDGTQITGDAYVCATPVDIFKLLVPQE-WSEITYFKK 386
Query: 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA 298
+ L + V++V +WFD+K+ N + SL + D++ E+ D + ++++
Sbjct: 387 LEKLVGVPVINVHIWFDRKLN--NTYDHLLFSRSSLLSVYADMSVTCKEYYDPNRSMLEL 444
Query: 299 DFYHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
F A+E + D +++ + L+K D S A ++ + I + P+S+ P
Sbjct: 445 VFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVP 502
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/356 (19%), Positives = 145/356 (40%), Gaps = 20/356 (5%)
Query: 6 YPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSR 64
YP+ + +L ELGI W + + ++ EF F LP+PL ++ +
Sbjct: 159 YPY--VQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNN 216
Query: 65 LPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGPLV 120
+ LT + I + + Y D ++ +E K+ G ER+ V +
Sbjct: 217 ----EMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVADEVFIAMS 272
Query: 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 180
+ F ++ S L I L + + + G E++ P +D +++ G E
Sbjct: 273 KALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVH 331
Query: 181 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL 240
R+ +++ S ++ + A V A + L+ L+ ++ F ++
Sbjct: 332 LNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDN-WKGIPYFQRLD 390
Query: 241 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF 300
L + V++V +WFD+K+ N + L + D++ E+ + ++++ F
Sbjct: 391 KLVGVPVINVHIWFDRKLK--NTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVF 448
Query: 301 YHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
A E + DD ++ ++ L+K D S A ++ + + + P+S+ P
Sbjct: 449 APAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVP 504
>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC
7942) GN=pds PE=1 SV=1
Length = 474
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 122/268 (45%), Gaps = 14/268 (5%)
Query: 94 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153
D + E ++ ER+ V + + F ++ SA L L L +K +
Sbjct: 147 DQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMM 205
Query: 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYS 208
+ G E++ +P ++ ++ RG + L + +F+ +++ + + G ++
Sbjct: 206 AFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIE 265
Query: 209 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 268
A A V A+ + L+ L+ ++ F ++ L + V+++ LWFD+K+T ++ +
Sbjct: 266 ADAYVSALPVDPLKLLLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLF 322
Query: 269 GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-K 327
L+ + D++ E++D ++++ F A + + D+ ++A ++ + K +
Sbjct: 323 SRSPLLS-VYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQ 381
Query: 328 DFS---TATVMDHKIRRFPKSLTHFFPG 352
FS A + +KI + P S+ PG
Sbjct: 382 HFSGENPARLRKYKIVKTPLSVYKATPG 409
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/358 (18%), Positives = 146/358 (40%), Gaps = 16/358 (4%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLF--YT 60
F+ + NI +L ELGI W + + ++ EF F LP PL +
Sbjct: 168 FFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFSEALPAPLNGILAILK 227
Query: 61 QFSRLPLVDRLT-SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPL 119
L +++ ++ L+ A++ + A D I+ ++ ++ G +R+ V +
Sbjct: 228 NNEMLTWPEKVKFAIGLLPAMLGGQSYVEA---QDGISVKDWMRKQGVPDRVTDEVFIAM 284
Query: 120 VQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 179
+ F ++ S L I L + + + G E++ P ++ + ++G +
Sbjct: 285 SKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQV 343
Query: 180 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 239
R+ +E+ S ++ A V A + + L+ F K+
Sbjct: 344 RLNSRIKKIELNEDGSVKSFILSDGSAIEGDAFVFAAPVDIFKLLLPED-WKEIPYFQKL 402
Query: 240 LNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD 299
L + V++V +WFD+K+ N + SL + D++ E+ + + ++++
Sbjct: 403 EKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSSLLSVYADMSVTCKEYYNPNQSMLELV 460
Query: 300 FYHANELMPLKDDQVVAKAVSYLS-----KCIKDFSTATVMDHKIRRFPKSLTHFFPG 352
F A E + D +++ + L+ + D S A ++ + + + P+S+ PG
Sbjct: 461 FAPAEEWISRSDSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPG 518
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/360 (19%), Positives = 143/360 (39%), Gaps = 22/360 (6%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQF 62
F+ + N+ +L ELGI W + + ++ EF F LP PL ++
Sbjct: 154 FFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILR 213
Query: 63 SRLPLVDRLTSLPLMAAVIDFDNTDVAWRKY----DSITARELFKQFGCSERLYRNVIGP 118
+ + LT + I V + Y D +T E ++ G +R+ V
Sbjct: 214 NN----EMLTWPEKVRFAIGLLPAMVGGQAYVEAQDGLTVTEWMRRQGVPDRVNDEVFIA 269
Query: 119 LVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCE 178
+ + F ++ S L I L + + + G E++ P +D +++ G
Sbjct: 270 MSKALNFINPDELSMQCIL-IALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGR 328
Query: 179 FLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNRE--EF 236
R+ + + V+ + A V+A + L+ L+ RE F
Sbjct: 329 AQLNSRLQKIELNPDGTVKHFVLGNGNIITGDAYVVAAPVDILKLLLPQEW---REIPYF 385
Query: 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVI 296
K+ L + V++V +WFD+K+ N + L + D++ E+ D + +++
Sbjct: 386 QKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFTRSPLLSVYADMSVTCKEYYDPNRSML 443
Query: 297 QADFYHANELMPLKDDQVVAKAVSYLSKCIK-----DFSTATVMDHKIRRFPKSLTHFFP 351
+ F A E + D +++ + + L+K D S A ++ + + + P+S+ P
Sbjct: 444 ELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIP 503
>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=pds PE=3 SV=2
Length = 472
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/369 (18%), Positives = 149/369 (40%), Gaps = 36/369 (9%)
Query: 4 FWYPFRNIFSLVDELGIKPFTGWMKSA----QYSEEGLEVEFPIFQDLNQLPTPLGTLFY 59
F+ + N+ L EL I+ W + + Q + G F D +P P+ L
Sbjct: 57 FFGAYPNMLQLFKELDIEDRLQWKEHSMIFNQPEKPGTYSRF----DFPDIPAPINGLVA 112
Query: 60 TQFSRLPLVDRLT-------SLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLY 112
+ D LT L L+ A++ + KY T E + R+
Sbjct: 113 ILRNN----DMLTWPEKIRFGLGLLPAIVQGQSYVEEMDKY---TWSEWMAKQNIPPRIE 165
Query: 113 RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172
+ V + + F ++ SA L L L + + + G E++ +P +D +
Sbjct: 166 KEVFIAMSKALNFIDPDEISATILLTALNRF-LQEKNGSKMAFLDGAPPERLCQPLVDYI 224
Query: 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQELIKN 227
RG E + + + + +E+ ++ G E +A V A+ + L+ ++
Sbjct: 225 TERGGEVHINKPLKEILLNEDGSVKGYLIRGLDGAPDEVITADLYVSAMPVDPLKTMVP- 283
Query: 228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDE 287
+ EF ++ L + V+++ LWFD+K+T ++ + L+ + D++ E
Sbjct: 284 APWREYPEFKQIQGLEGVPVINLHLWFDRKLT--DIDHLLFSRSPLLS-VYADMSNTCRE 340
Query: 288 HKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFP 343
+ D ++++ A + + D+++VA ++ + + + A ++ + + P
Sbjct: 341 YSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLFPQHFNGDNPARLLKSHVVKTP 400
Query: 344 KSLTHFFPG 352
+S+ PG
Sbjct: 401 RSVYKATPG 409
>sp|Q31IB6|GLGB_THICR 1,4-alpha-glucan branching enzyme GlgB OS=Thiomicrospira crunogena
(strain XCL-2) GN=glgB PE=3 SV=1
Length = 726
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 235 EFLKVLNL-ASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDSLAWT---------FFDLN 282
EFLK LN + ++ + P VS G G S+ W FF +
Sbjct: 439 EFLKTLNAEVHAQCPGALMMAEESTSWPMVSRPTWMGGLGFSMKWNMGWMNDTLDFFQQD 498
Query: 283 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 328
IY + + T Q Y N ++PL D+VV + +SK D
Sbjct: 499 PIYRPYHHNQLTFSQMYAYSENFILPLSHDEVVHMKHALVSKMPGD 544
>sp|Q9ZCN2|Y691_RICPR Uncharacterized protein RP691 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP691 PE=4 SV=1
Length = 656
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 237 LKVLNLAS-IDVVSVKLWFDKKVTVPNVSNACSGFGDSLA----WTFFDLNKIYDEHKDD 291
LK+L+LA+ IDV++ ++ NV NA S G ++A T LNKI DD
Sbjct: 578 LKLLSLATLIDVLTTA------ISDLNVGNAISSAGKNIAEKTATTLTWLNKIASGTNDD 631
Query: 292 SATVIQADFYHANELMPL 309
+ I D H EL PL
Sbjct: 632 TNDDIVIDIAHTEELQPL 649
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,909,703
Number of Sequences: 539616
Number of extensions: 5301745
Number of successful extensions: 13612
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 13608
Number of HSP's gapped (non-prelim): 15
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)