Query 018455
Match_columns 355
No_of_seqs 188 out of 2004
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 2.4E-36 5.1E-41 287.6 32.9 349 1-354 129-507 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 2.2E-34 4.8E-39 272.2 33.0 349 1-354 53-431 (474)
3 PLN02612 phytoene desaturase 100.0 1E-32 2.3E-37 265.6 33.3 342 1-353 147-501 (567)
4 TIGR02731 phytoene_desat phyto 100.0 1.1E-30 2.4E-35 247.6 33.6 341 1-353 53-409 (453)
5 TIGR03467 HpnE squalene-associ 100.0 6.3E-30 1.4E-34 240.4 31.4 329 1-353 42-374 (419)
6 COG1232 HemY Protoporphyrinoge 100.0 1.5E-28 3.2E-33 225.1 25.2 320 2-354 56-399 (444)
7 PRK07233 hypothetical protein; 100.0 2.1E-26 4.5E-31 217.5 30.4 327 1-353 52-384 (434)
8 PRK12416 protoporphyrinogen ox 99.9 3.1E-25 6.7E-30 210.9 28.7 324 2-353 61-413 (463)
9 TIGR00562 proto_IX_ox protopor 99.9 7.9E-25 1.7E-29 208.3 29.9 318 2-353 60-412 (462)
10 PRK07208 hypothetical protein; 99.9 2E-23 4.2E-28 199.5 30.5 322 1-353 57-412 (479)
11 PRK11883 protoporphyrinogen ox 99.9 6.4E-23 1.4E-27 194.7 28.3 324 2-353 56-405 (451)
12 PLN02576 protoporphyrinogen ox 99.9 6.7E-23 1.4E-27 196.6 28.4 321 2-354 67-439 (496)
13 COG3349 Uncharacterized conser 99.9 5.7E-22 1.2E-26 181.1 16.9 344 1-354 54-417 (485)
14 KOG1276 Protoporphyrinogen oxi 99.8 1.5E-17 3.3E-22 147.1 19.3 252 92-355 152-446 (491)
15 COG2907 Predicted NAD/FAD-bind 99.7 9.6E-17 2.1E-21 138.4 16.5 224 1-247 64-297 (447)
16 TIGR02733 desat_CrtD C-3',4' d 99.7 4.8E-15 1E-19 142.1 24.2 234 93-337 167-418 (492)
17 PLN02268 probable polyamine ox 99.7 5.4E-15 1.2E-19 139.7 22.7 224 92-343 130-370 (435)
18 PLN02529 lysine-specific histo 99.6 6.6E-14 1.4E-18 137.1 23.2 231 92-343 285-533 (738)
19 COG1231 Monoamine oxidase [Ami 99.6 7.1E-15 1.5E-19 132.5 13.7 178 156-347 204-390 (450)
20 PLN02328 lysine-specific histo 99.6 8.3E-13 1.8E-17 130.0 25.8 175 153-345 429-615 (808)
21 PLN02676 polyamine oxidase 99.6 1.4E-13 3E-18 130.9 17.1 242 92-348 155-417 (487)
22 TIGR02734 crtI_fam phytoene de 99.5 1.1E-12 2.3E-17 126.4 22.2 230 93-337 159-417 (502)
23 PLN02568 polyamine oxidase 99.5 3.2E-13 7E-18 129.4 18.5 218 95-327 160-421 (539)
24 PF01593 Amino_oxidase: Flavin 99.5 3.6E-13 7.8E-18 126.9 15.9 241 92-344 139-389 (450)
25 PLN03000 amine oxidase 99.5 3.4E-12 7.4E-17 125.8 21.8 173 153-343 373-557 (881)
26 PTZ00363 rab-GDP dissociation 99.5 2.3E-12 4.9E-17 120.3 19.5 196 8-217 83-287 (443)
27 TIGR02730 carot_isom carotene 99.5 5.2E-12 1.1E-16 121.1 21.5 226 95-331 169-413 (493)
28 PLN02976 amine oxidase 99.4 5.2E-12 1.1E-16 128.4 17.5 206 124-348 903-1129(1713)
29 KOG4254 Phytoene desaturase [C 99.3 8.4E-10 1.8E-14 99.1 20.5 78 152-232 255-334 (561)
30 KOG0029 Amine oxidase [Seconda 99.1 5.4E-09 1.2E-13 99.0 18.1 178 155-348 213-399 (501)
31 COG1233 Phytoene dehydrogenase 99.1 2.9E-09 6.2E-14 101.7 16.2 124 93-227 164-288 (487)
32 PF00996 GDI: GDP dissociation 99.1 8.4E-09 1.8E-13 95.5 17.8 195 4-214 80-283 (438)
33 PRK13977 myosin-cross-reactive 99.0 9.7E-09 2.1E-13 97.5 16.6 123 91-219 158-292 (576)
34 KOG0685 Flavin-containing amin 98.9 8.3E-09 1.8E-13 93.7 11.5 215 113-344 180-423 (498)
35 COG3380 Predicted NAD/FAD-depe 98.9 2.1E-09 4.6E-14 90.6 4.3 165 176-350 117-287 (331)
36 KOG1439 RAB proteins geranylge 98.6 2.7E-07 6E-12 82.1 10.9 197 4-215 80-284 (440)
37 PF07156 Prenylcys_lyase: Pren 98.1 9.3E-06 2E-10 74.1 8.2 118 92-221 66-188 (368)
38 COG5044 MRS6 RAB proteins gera 97.9 0.00018 3.8E-09 63.9 11.5 192 4-215 81-279 (434)
39 PF01266 DAO: FAD dependent ox 97.5 0.00041 9E-09 63.5 8.3 95 127-227 112-209 (358)
40 PF06100 Strep_67kDa_ant: Stre 97.4 0.0047 1E-07 57.8 13.3 138 64-217 121-271 (500)
41 PF03486 HI0933_like: HI0933-l 97.2 0.0012 2.6E-08 61.6 7.7 64 154-219 101-165 (409)
42 TIGR02352 thiamin_ThiO glycine 97.2 0.0014 3E-08 59.7 7.9 57 164-222 139-195 (337)
43 KOG4405 GDP dissociation inhib 97.2 0.0097 2.1E-07 53.9 12.4 151 59-214 184-339 (547)
44 COG2081 Predicted flavoprotein 97.1 0.0012 2.5E-08 59.8 6.1 62 154-219 103-166 (408)
45 TIGR03377 glycerol3P_GlpA glyc 97.0 0.067 1.5E-06 51.9 17.8 56 164-221 130-191 (516)
46 PLN02464 glycerol-3-phosphate 97.0 0.076 1.6E-06 52.7 18.2 56 164-220 234-296 (627)
47 PRK00711 D-amino acid dehydrog 97.0 0.0031 6.7E-08 59.3 8.1 56 164-221 203-258 (416)
48 COG0579 Predicted dehydrogenas 96.9 0.0036 7.7E-08 58.2 8.0 55 164-220 155-211 (429)
49 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0054 1.2E-07 57.0 8.3 66 160-227 261-329 (419)
50 COG2509 Uncharacterized FAD-de 96.7 0.0056 1.2E-07 56.3 7.3 55 164-220 175-230 (486)
51 PRK11101 glpA sn-glycerol-3-ph 96.6 0.3 6.6E-06 47.7 19.2 55 164-220 151-211 (546)
52 COG0578 GlpA Glycerol-3-phosph 96.6 0.13 2.7E-06 49.3 15.4 92 153-256 154-254 (532)
53 PTZ00383 malate:quinone oxidor 96.5 0.0098 2.1E-07 57.0 8.0 56 164-221 213-274 (497)
54 TIGR02485 CobZ_N-term precorri 96.5 0.013 2.8E-07 55.5 8.8 64 155-219 117-182 (432)
55 PF13738 Pyr_redox_3: Pyridine 96.4 0.011 2.4E-07 49.5 6.6 53 164-219 84-137 (203)
56 TIGR00031 UDP-GALP_mutase UDP- 96.3 0.0036 7.8E-08 57.7 3.5 115 97-223 130-250 (377)
57 TIGR03862 flavo_PP4765 unchara 96.2 0.016 3.4E-07 53.3 7.3 62 154-220 78-141 (376)
58 TIGR03329 Phn_aa_oxid putative 96.2 0.016 3.4E-07 55.4 7.4 54 164-221 185-238 (460)
59 TIGR03197 MnmC_Cterm tRNA U-34 96.1 0.011 2.4E-07 55.0 5.9 64 154-221 125-191 (381)
60 TIGR01373 soxB sarcosine oxida 96.1 0.025 5.4E-07 53.0 8.2 57 164-221 185-241 (407)
61 PRK11728 hydroxyglutarate oxid 95.9 0.029 6.2E-07 52.4 7.8 54 164-220 151-204 (393)
62 TIGR01377 soxA_mon sarcosine o 95.9 0.028 6.2E-07 52.1 7.8 54 164-220 147-200 (380)
63 PRK08274 tricarballylate dehyd 95.9 0.036 7.7E-07 53.1 8.4 54 164-219 133-191 (466)
64 PF00890 FAD_binding_2: FAD bi 95.8 0.035 7.7E-07 52.2 8.1 58 162-221 141-204 (417)
65 PRK10157 putative oxidoreducta 95.8 0.044 9.5E-07 51.8 8.3 55 164-220 110-164 (428)
66 TIGR00275 flavoprotein, HI0933 95.7 0.05 1.1E-06 50.9 8.4 63 155-220 98-160 (400)
67 PRK12845 3-ketosteroid-delta-1 95.5 0.052 1.1E-06 53.2 7.8 60 157-220 214-278 (564)
68 PRK06134 putative FAD-binding 95.5 0.056 1.2E-06 53.2 8.1 55 164-220 219-278 (581)
69 PRK12835 3-ketosteroid-delta-1 95.4 0.059 1.3E-06 53.0 8.1 56 164-220 215-275 (584)
70 PRK04176 ribulose-1,5-biphosph 95.4 0.063 1.4E-06 46.9 7.4 56 164-220 106-173 (257)
71 PRK11259 solA N-methyltryptoph 95.4 0.057 1.2E-06 49.9 7.6 55 164-221 151-205 (376)
72 PRK10015 oxidoreductase; Provi 95.4 0.08 1.7E-06 50.1 8.5 55 164-220 110-164 (429)
73 TIGR01816 sdhA_forward succina 95.3 0.094 2E-06 51.5 9.2 63 156-220 113-181 (565)
74 KOG2820 FAD-dependent oxidored 95.3 0.069 1.5E-06 47.5 7.1 59 166-224 157-216 (399)
75 PRK12409 D-amino acid dehydrog 95.3 0.071 1.5E-06 50.0 7.9 55 164-221 199-259 (410)
76 PRK12844 3-ketosteroid-delta-1 95.3 0.077 1.7E-06 51.9 8.4 57 162-220 208-269 (557)
77 TIGR01813 flavo_cyto_c flavocy 95.3 0.067 1.5E-06 50.7 7.8 57 164-221 132-193 (439)
78 TIGR01320 mal_quin_oxido malat 95.2 0.072 1.6E-06 51.1 7.9 55 164-220 180-240 (483)
79 PRK07121 hypothetical protein; 95.2 0.083 1.8E-06 50.9 8.2 57 163-220 178-239 (492)
80 PRK05675 sdhA succinate dehydr 95.2 0.11 2.4E-06 51.0 9.1 65 155-220 119-189 (570)
81 PRK06175 L-aspartate oxidase; 95.0 0.13 2.8E-06 48.7 8.8 62 156-219 122-188 (433)
82 PRK12843 putative FAD-binding 95.0 0.12 2.6E-06 50.9 8.7 57 163-221 222-283 (578)
83 PRK09078 sdhA succinate dehydr 95.0 0.14 3E-06 50.7 9.1 61 159-220 146-212 (598)
84 PRK05329 anaerobic glycerol-3- 95.0 0.11 2.5E-06 48.7 8.1 59 164-224 261-322 (422)
85 TIGR00292 thiazole biosynthesi 94.9 0.15 3.2E-06 44.5 8.1 56 164-219 102-169 (254)
86 PRK08958 sdhA succinate dehydr 94.8 0.16 3.5E-06 50.1 9.1 64 156-220 137-206 (588)
87 PRK05257 malate:quinone oxidor 94.8 0.11 2.4E-06 49.9 7.8 56 164-221 185-247 (494)
88 PF06039 Mqo: Malate:quinone o 94.7 0.26 5.5E-06 46.1 9.4 61 161-224 181-248 (488)
89 PRK06481 fumarate reductase fl 94.7 0.11 2.4E-06 50.2 7.6 56 163-220 191-251 (506)
90 PRK07843 3-ketosteroid-delta-1 94.7 0.13 2.9E-06 50.3 8.2 58 161-220 207-269 (557)
91 PF00732 GMC_oxred_N: GMC oxid 94.6 0.1 2.3E-06 46.5 6.7 61 168-228 199-266 (296)
92 PRK07190 hypothetical protein; 94.5 0.17 3.7E-06 48.7 8.4 59 164-225 111-171 (487)
93 PRK08401 L-aspartate oxidase; 94.5 0.22 4.8E-06 47.7 9.1 58 161-221 119-176 (466)
94 PRK06847 hypothetical protein; 94.5 0.15 3.2E-06 47.2 7.7 54 164-220 109-163 (375)
95 PRK07573 sdhA succinate dehydr 94.4 0.22 4.8E-06 49.6 9.1 53 166-220 174-232 (640)
96 PRK12839 hypothetical protein; 94.3 0.18 3.9E-06 49.5 8.1 57 163-220 215-276 (572)
97 PRK05945 sdhA succinate dehydr 94.3 0.27 5.9E-06 48.4 9.3 64 155-220 128-197 (575)
98 TIGR01812 sdhA_frdA_Gneg succi 94.2 0.26 5.6E-06 48.5 9.1 59 160-220 127-191 (566)
99 TIGR01811 sdhA_Bsu succinate d 94.2 0.26 5.5E-06 48.8 9.1 59 160-219 127-195 (603)
100 PRK07057 sdhA succinate dehydr 94.1 0.31 6.7E-06 48.1 9.4 61 159-220 145-211 (591)
101 PRK06452 sdhA succinate dehydr 94.1 0.31 6.8E-06 47.9 9.3 58 161-220 135-198 (566)
102 TIGR02032 GG-red-SF geranylger 94.1 0.23 4.9E-06 44.0 7.8 54 164-220 93-148 (295)
103 PTZ00139 Succinate dehydrogena 94.1 0.28 6.2E-06 48.6 9.0 59 160-219 164-228 (617)
104 PRK12842 putative succinate de 94.0 0.23 4.9E-06 48.9 8.2 55 164-220 216-275 (574)
105 PF01134 GIDA: Glucose inhibit 94.0 0.27 6E-06 45.4 8.1 52 164-218 97-150 (392)
106 PRK07333 2-octaprenyl-6-methox 93.8 0.29 6.2E-06 45.8 8.2 54 164-220 113-167 (403)
107 PRK13339 malate:quinone oxidor 93.8 0.24 5.2E-06 47.6 7.6 55 164-220 186-247 (497)
108 PRK06116 glutathione reductase 93.8 0.25 5.4E-06 47.1 7.8 53 164-218 210-263 (450)
109 PLN00128 Succinate dehydrogena 93.7 0.35 7.6E-06 48.1 9.0 60 160-220 185-250 (635)
110 PRK07395 L-aspartate oxidase; 93.7 0.27 5.9E-06 48.1 8.1 60 160-219 132-196 (553)
111 TIGR03364 HpnW_proposed FAD de 93.6 0.2 4.3E-06 46.2 6.7 51 164-221 147-198 (365)
112 PRK07512 L-aspartate oxidase; 93.5 0.25 5.4E-06 47.9 7.4 59 160-220 134-197 (513)
113 PRK08773 2-octaprenyl-3-methyl 93.5 0.27 5.8E-06 45.9 7.4 54 164-220 115-169 (392)
114 PF13454 NAD_binding_9: FAD-NA 93.4 0.41 8.9E-06 38.3 7.4 41 175-218 113-155 (156)
115 PRK05714 2-octaprenyl-3-methyl 93.4 0.3 6.6E-06 45.7 7.7 60 164-226 114-175 (405)
116 TIGR00551 nadB L-aspartate oxi 93.4 0.37 8E-06 46.4 8.4 57 162-220 128-189 (488)
117 PRK08626 fumarate reductase fl 93.4 0.43 9.4E-06 47.7 9.0 55 164-220 160-220 (657)
118 COG0644 FixC Dehydrogenases (f 93.4 0.36 7.9E-06 45.1 8.1 56 164-220 97-152 (396)
119 TIGR01984 UbiH 2-polyprenyl-6- 93.4 0.32 7E-06 45.1 7.7 59 164-225 107-168 (382)
120 COG4716 Myosin-crossreactive a 93.4 0.6 1.3E-05 42.3 8.8 99 91-195 159-260 (587)
121 COG0665 DadA Glycine/D-amino a 93.3 0.33 7.1E-06 45.0 7.7 56 164-222 158-214 (387)
122 PF00070 Pyr_redox: Pyridine n 93.3 0.32 7E-06 33.8 5.8 40 160-202 38-77 (80)
123 PRK12834 putative FAD-binding 93.3 0.35 7.7E-06 47.3 8.1 55 164-220 150-227 (549)
124 PRK12266 glpD glycerol-3-phosp 93.2 0.33 7.2E-06 47.0 7.7 54 164-220 157-216 (508)
125 PRK06263 sdhA succinate dehydr 93.1 0.35 7.5E-06 47.3 7.8 59 161-220 133-197 (543)
126 PRK08275 putative oxidoreducta 93.1 0.41 8.9E-06 46.9 8.3 56 164-220 139-200 (554)
127 KOG2844 Dimethylglycine dehydr 93.1 0.19 4E-06 48.8 5.5 94 123-220 147-243 (856)
128 PRK01747 mnmC bifunctional tRN 93.1 0.21 4.7E-06 50.0 6.4 64 154-221 398-464 (662)
129 PRK08205 sdhA succinate dehydr 93.1 0.51 1.1E-05 46.6 8.9 61 160-220 138-206 (583)
130 PRK06184 hypothetical protein; 93.1 0.46 1E-05 46.0 8.5 59 164-225 111-174 (502)
131 PRK06834 hypothetical protein; 93.0 0.36 7.8E-06 46.5 7.6 59 164-225 102-162 (488)
132 PRK09564 coenzyme A disulfide 93.0 0.41 8.9E-06 45.5 7.9 53 164-219 193-245 (444)
133 PRK07251 pyridine nucleotide-d 92.7 0.48 1E-05 45.0 7.9 53 164-219 200-252 (438)
134 COG1252 Ndh NADH dehydrogenase 92.7 0.35 7.6E-06 44.9 6.7 52 161-219 208-261 (405)
135 PRK07045 putative monooxygenas 92.7 0.55 1.2E-05 43.7 8.2 59 164-223 108-169 (388)
136 KOG1336 Monodehydroascorbate/f 92.6 0.31 6.7E-06 45.5 6.2 58 163-221 256-314 (478)
137 PRK12837 3-ketosteroid-delta-1 92.6 0.55 1.2E-05 45.6 8.3 55 164-220 175-235 (513)
138 PRK08010 pyridine nucleotide-d 92.5 0.47 1E-05 45.0 7.6 52 164-218 201-252 (441)
139 PRK14694 putative mercuric red 92.4 0.51 1.1E-05 45.2 7.8 53 164-219 220-272 (468)
140 PRK06416 dihydrolipoamide dehy 92.4 0.56 1.2E-05 44.9 8.0 53 164-219 215-271 (462)
141 TIGR01423 trypano_reduc trypan 92.4 0.53 1.1E-05 45.3 7.8 53 164-218 233-286 (486)
142 PRK13369 glycerol-3-phosphate 92.3 0.64 1.4E-05 45.0 8.4 54 164-220 157-215 (502)
143 PRK05249 soluble pyridine nucl 92.3 0.47 1E-05 45.3 7.4 53 164-219 218-271 (461)
144 PRK04965 NADH:flavorubredoxin 92.2 0.65 1.4E-05 43.1 7.9 54 164-220 185-239 (377)
145 PRK14989 nitrite reductase sub 92.1 0.56 1.2E-05 48.3 7.9 56 164-220 189-245 (847)
146 PF04820 Trp_halogenase: Trypt 92.0 0.75 1.6E-05 43.8 8.2 55 164-220 156-211 (454)
147 PRK14727 putative mercuric red 92.0 0.56 1.2E-05 45.1 7.5 54 164-220 230-283 (479)
148 PLN02697 lycopene epsilon cycl 91.9 0.66 1.4E-05 45.0 7.8 54 164-220 194-248 (529)
149 TIGR01424 gluta_reduc_2 glutat 91.8 0.61 1.3E-05 44.4 7.5 53 164-219 209-262 (446)
150 TIGR01350 lipoamide_DH dihydro 91.8 0.79 1.7E-05 43.8 8.2 53 164-219 213-268 (461)
151 PRK07804 L-aspartate oxidase; 91.7 0.6 1.3E-05 45.6 7.4 58 162-220 144-210 (541)
152 PLN02507 glutathione reductase 91.7 0.68 1.5E-05 44.8 7.7 52 164-218 246-298 (499)
153 PF05834 Lycopene_cycl: Lycope 91.7 11 0.00024 34.9 17.1 54 164-221 89-143 (374)
154 TIGR01988 Ubi-OHases Ubiquinon 91.7 0.72 1.6E-05 42.7 7.7 54 164-220 108-163 (385)
155 PRK08163 salicylate hydroxylas 91.7 0.74 1.6E-05 42.9 7.8 55 164-221 111-167 (396)
156 PRK07845 flavoprotein disulfid 91.5 0.71 1.5E-05 44.2 7.6 52 164-218 220-272 (466)
157 PRK07803 sdhA succinate dehydr 91.5 1.1 2.4E-05 44.6 9.1 57 161-219 137-212 (626)
158 PRK09897 hypothetical protein; 91.4 0.71 1.5E-05 44.8 7.5 50 166-218 111-164 (534)
159 PRK06069 sdhA succinate dehydr 91.4 1.1 2.3E-05 44.3 8.9 59 160-220 135-200 (577)
160 PRK06854 adenylylsulfate reduc 91.3 0.87 1.9E-05 45.2 8.2 55 164-220 134-195 (608)
161 PRK09754 phenylpropionate diox 91.3 0.96 2.1E-05 42.3 8.1 53 164-220 188-241 (396)
162 TIGR01421 gluta_reduc_1 glutat 91.3 0.9 2E-05 43.3 8.0 54 164-219 209-264 (450)
163 TIGR01810 betA choline dehydro 91.3 0.45 9.8E-06 46.4 6.1 51 173-225 205-260 (532)
164 PRK08020 ubiF 2-octaprenyl-3-m 91.1 0.86 1.9E-05 42.4 7.6 59 164-225 114-175 (391)
165 TIGR02462 pyranose_ox pyranose 91.1 0.75 1.6E-05 44.7 7.2 52 174-225 226-284 (544)
166 PRK13748 putative mercuric red 90.9 0.86 1.9E-05 44.8 7.7 53 164-219 312-364 (561)
167 PRK07588 hypothetical protein; 90.8 0.65 1.4E-05 43.2 6.5 57 164-224 105-163 (391)
168 PRK08071 L-aspartate oxidase; 90.8 0.53 1.1E-05 45.6 6.0 54 164-220 132-190 (510)
169 PLN02815 L-aspartate oxidase 90.7 1.2 2.7E-05 43.9 8.5 57 164-220 157-222 (594)
170 TIGR01292 TRX_reduct thioredox 90.6 1 2.2E-05 40.0 7.4 52 164-219 59-111 (300)
171 PF01494 FAD_binding_3: FAD bi 90.6 0.95 2.1E-05 41.1 7.3 61 164-226 113-179 (356)
172 PRK07818 dihydrolipoamide dehy 90.4 1.3 2.9E-05 42.3 8.3 52 164-218 215-271 (466)
173 PRK06370 mercuric reductase; V 90.3 1.3 2.7E-05 42.4 8.1 55 164-219 214-270 (463)
174 PRK15317 alkyl hydroperoxide r 90.3 1.1 2.4E-05 43.6 7.7 53 164-219 268-321 (517)
175 TIGR03140 AhpF alkyl hydropero 90.3 1.1 2.3E-05 43.7 7.6 53 164-219 269-322 (515)
176 TIGR02374 nitri_red_nirB nitri 90.2 0.95 2.1E-05 46.4 7.5 53 164-219 184-237 (785)
177 KOG1346 Programmed cell death 90.2 0.39 8.5E-06 44.1 4.1 67 157-226 384-455 (659)
178 PRK06912 acoL dihydrolipoamide 90.1 1.4 2.9E-05 42.2 8.1 53 164-219 213-267 (458)
179 TIGR03385 CoA_CoA_reduc CoA-di 90.0 1 2.3E-05 42.5 7.2 53 164-220 181-233 (427)
180 PRK07608 ubiquinone biosynthes 90.0 1.2 2.6E-05 41.3 7.5 53 164-220 113-167 (388)
181 PRK06327 dihydrolipoamide dehy 89.9 1.4 3E-05 42.3 8.0 53 164-219 226-283 (475)
182 COG0654 UbiH 2-polyprenyl-6-me 89.9 1.5 3.3E-05 40.8 8.1 60 164-226 106-169 (387)
183 TIGR01176 fum_red_Fp fumarate 89.9 2.1 4.5E-05 42.3 9.3 59 160-220 130-195 (580)
184 PRK06185 hypothetical protein; 89.8 1.7 3.8E-05 40.6 8.5 60 164-225 110-175 (407)
185 PRK08244 hypothetical protein; 89.6 1.7 3.7E-05 41.9 8.5 59 164-225 102-165 (493)
186 PTZ00318 NADH dehydrogenase-li 89.5 1.1 2.3E-05 42.4 6.9 48 164-218 230-278 (424)
187 PLN02463 lycopene beta cyclase 89.5 1.3 2.8E-05 42.1 7.4 53 164-220 116-169 (447)
188 PRK08849 2-octaprenyl-3-methyl 89.5 1.3 2.9E-05 41.1 7.4 59 164-225 112-173 (384)
189 PTZ00306 NADH-dependent fumara 89.5 1.1 2.4E-05 48.0 7.6 58 164-221 546-621 (1167)
190 PRK09126 hypothetical protein; 89.5 1.5 3.3E-05 40.8 7.8 59 164-225 112-173 (392)
191 PRK09231 fumarate reductase fl 89.4 2.1 4.6E-05 42.2 9.0 59 160-220 131-196 (582)
192 PRK05192 tRNA uridine 5-carbox 89.4 1.3 2.9E-05 43.4 7.4 54 164-220 102-157 (618)
193 TIGR02053 MerA mercuric reduct 89.4 1.6 3.5E-05 41.7 8.0 52 164-218 209-264 (463)
194 KOG0042 Glycerol-3-phosphate d 89.2 3.7 8.1E-05 39.3 9.7 152 154-326 215-376 (680)
195 PRK08013 oxidoreductase; Provi 89.2 1.5 3.2E-05 41.1 7.5 59 164-225 113-174 (400)
196 PRK06617 2-octaprenyl-6-methox 89.1 1.5 3.3E-05 40.5 7.5 59 164-225 106-166 (374)
197 PRK08850 2-octaprenyl-6-methox 89.1 1.5 3.2E-05 41.1 7.4 59 164-225 113-174 (405)
198 PRK08641 sdhA succinate dehydr 89.0 2 4.4E-05 42.4 8.5 59 161-220 132-200 (589)
199 TIGR00136 gidA glucose-inhibit 88.9 1.5 3.2E-05 43.1 7.3 55 164-220 98-154 (617)
200 TIGR01790 carotene-cycl lycope 88.8 1.7 3.6E-05 40.4 7.5 54 164-220 87-141 (388)
201 PRK07494 2-octaprenyl-6-methox 88.8 1.5 3.2E-05 40.7 7.2 54 164-220 113-167 (388)
202 PRK05732 2-octaprenyl-6-methox 88.8 1.6 3.5E-05 40.6 7.4 54 164-220 114-169 (395)
203 COG1249 Lpd Pyruvate/2-oxoglut 88.7 1.7 3.7E-05 41.3 7.5 56 160-218 212-270 (454)
204 PRK09077 L-aspartate oxidase; 88.7 2.4 5.1E-05 41.5 8.7 63 158-220 134-207 (536)
205 PTZ00052 thioredoxin reductase 88.6 1.7 3.7E-05 42.0 7.6 53 164-219 224-277 (499)
206 PTZ00058 glutathione reductase 88.4 1.9 4.2E-05 42.2 7.8 54 164-219 280-335 (561)
207 PRK04965 NADH:flavorubredoxin 88.3 1.3 2.9E-05 41.0 6.5 45 170-219 66-110 (377)
208 PRK05976 dihydrolipoamide dehy 88.2 2.3 5E-05 40.8 8.2 54 164-219 223-280 (472)
209 PLN02172 flavin-containing mon 88.1 1.6 3.5E-05 41.7 7.0 53 164-219 113-172 (461)
210 PRK06115 dihydrolipoamide dehy 87.4 2.6 5.7E-05 40.3 8.0 53 164-219 217-275 (466)
211 PRK06183 mhpA 3-(3-hydroxyphen 87.1 2.9 6.3E-05 40.9 8.3 59 164-225 115-180 (538)
212 PRK06996 hypothetical protein; 86.9 2.3 5E-05 39.7 7.2 59 164-225 117-181 (398)
213 TIGR01438 TGR thioredoxin and 86.9 2.6 5.7E-05 40.6 7.7 53 164-219 222-278 (484)
214 PRK05868 hypothetical protein; 86.9 2.3 4.9E-05 39.4 7.1 51 174-227 116-168 (372)
215 TIGR02061 aprA adenosine phosp 86.8 3.2 7E-05 41.2 8.4 57 164-220 128-191 (614)
216 PLN02546 glutathione reductase 86.7 3.4 7.4E-05 40.5 8.4 54 164-219 295-349 (558)
217 PRK07364 2-octaprenyl-6-methox 86.3 2.4 5.2E-05 39.8 7.0 55 164-221 123-182 (415)
218 PRK10262 thioredoxin reductase 86.1 2.1 4.6E-05 38.6 6.3 55 164-220 187-248 (321)
219 KOG1335 Dihydrolipoamide dehyd 86.0 3.8 8.2E-05 37.6 7.5 60 158-219 248-313 (506)
220 TIGR03169 Nterm_to_SelD pyridi 85.9 2 4.3E-05 39.6 6.1 49 164-219 193-242 (364)
221 TIGR03219 salicylate_mono sali 85.8 2.2 4.9E-05 40.0 6.6 57 164-225 107-165 (414)
222 PRK02106 choline dehydrogenase 85.7 1.5 3.3E-05 43.0 5.6 51 173-225 212-267 (560)
223 TIGR01316 gltA glutamate synth 85.5 2.9 6.3E-05 39.8 7.2 50 168-218 315-385 (449)
224 PRK06126 hypothetical protein; 85.4 3.6 7.8E-05 40.3 8.0 59 164-225 128-194 (545)
225 PF12831 FAD_oxidored: FAD dep 85.3 0.26 5.6E-06 46.6 0.0 58 168-227 96-157 (428)
226 TIGR01989 COQ6 Ubiquinone bios 84.7 3.9 8.5E-05 38.8 7.7 61 164-225 119-189 (437)
227 PLN02661 Putative thiazole syn 84.4 4.8 0.0001 36.8 7.6 54 164-219 174-243 (357)
228 PRK13512 coenzyme A disulfide 84.4 2.7 5.8E-05 39.9 6.4 49 164-219 191-240 (438)
229 PRK08243 4-hydroxybenzoate 3-m 84.2 4.5 9.7E-05 37.7 7.7 59 164-225 105-169 (392)
230 PRK07236 hypothetical protein; 84.0 3.6 7.9E-05 38.2 7.1 43 176-221 112-155 (386)
231 PRK12810 gltD glutamate syntha 83.7 3.7 8E-05 39.4 7.1 48 169-218 336-398 (471)
232 PRK07846 mycothione reductase; 83.3 4.3 9.2E-05 38.7 7.3 52 164-219 209-261 (451)
233 TIGR02374 nitri_red_nirB nitri 83.1 2.8 6.1E-05 43.0 6.3 46 169-219 61-107 (785)
234 PRK11749 dihydropyrimidine deh 82.7 4.4 9.6E-05 38.7 7.2 50 168-219 317-386 (457)
235 PRK09754 phenylpropionate diox 82.4 3.3 7.2E-05 38.6 6.1 43 172-219 68-111 (396)
236 TIGR03452 mycothione_red mycot 82.3 5.4 0.00012 38.1 7.5 52 164-219 212-264 (452)
237 KOG2404 Fumarate reductase, fl 82.2 2.9 6.3E-05 37.3 5.1 56 164-221 141-207 (477)
238 PRK06475 salicylate hydroxylas 82.0 6.3 0.00014 36.8 7.8 59 164-225 109-173 (400)
239 PRK08132 FAD-dependent oxidore 82.0 6.3 0.00014 38.6 8.1 60 164-226 127-192 (547)
240 PF00743 FMO-like: Flavin-bind 81.7 5.5 0.00012 38.8 7.4 57 164-220 86-150 (531)
241 TIGR01318 gltD_gamma_fam gluta 81.7 5.9 0.00013 38.0 7.6 49 169-218 327-396 (467)
242 PRK12831 putative oxidoreducta 81.6 4.9 0.00011 38.5 7.0 48 171-219 327-395 (464)
243 PRK06753 hypothetical protein; 80.7 5.5 0.00012 36.7 6.9 47 176-225 110-158 (373)
244 COG1635 THI4 Ribulose 1,5-bisp 80.5 8.7 0.00019 32.5 7.0 56 164-220 111-178 (262)
245 TIGR03140 AhpF alkyl hydropero 80.4 5.7 0.00012 38.6 7.1 50 168-219 393-449 (515)
246 PRK11445 putative oxidoreducta 80.3 8 0.00017 35.4 7.8 45 174-221 110-158 (351)
247 COG0446 HcaD Uncharacterized N 79.9 5.7 0.00012 36.9 6.8 54 164-219 180-236 (415)
248 PF13434 K_oxygenase: L-lysine 79.9 3.8 8.3E-05 37.4 5.4 44 175-218 108-157 (341)
249 PRK12769 putative oxidoreducta 78.7 7.3 0.00016 39.1 7.4 50 168-218 512-582 (654)
250 PRK07538 hypothetical protein; 78.6 8.8 0.00019 36.0 7.6 61 164-225 104-171 (413)
251 PRK09564 coenzyme A disulfide 78.2 6.8 0.00015 37.2 6.8 48 169-219 63-114 (444)
252 PF01946 Thi4: Thi4 family; PD 77.6 14 0.0003 31.3 7.4 55 164-219 98-164 (230)
253 COG0492 TrxB Thioredoxin reduc 77.2 10 0.00022 34.0 7.2 57 160-220 59-115 (305)
254 COG2072 TrkA Predicted flavopr 76.6 10 0.00022 36.1 7.3 54 165-219 85-143 (443)
255 PF07992 Pyr_redox_2: Pyridine 76.1 5.7 0.00012 32.7 5.1 50 168-219 64-121 (201)
256 TIGR03169 Nterm_to_SelD pyridi 75.9 4.8 0.0001 37.0 5.0 47 167-219 59-106 (364)
257 KOG0405 Pyridine nucleotide-di 75.8 8.6 0.00019 34.9 6.1 61 158-219 226-286 (478)
258 TIGR03385 CoA_CoA_reduc CoA-di 75.8 8 0.00017 36.5 6.5 45 172-219 54-102 (427)
259 KOG0404 Thioredoxin reductase 75.4 5.9 0.00013 33.5 4.7 62 155-220 63-124 (322)
260 COG1251 NirB NAD(P)H-nitrite r 75.2 3.2 7E-05 41.2 3.6 50 167-219 192-242 (793)
261 PRK14989 nitrite reductase sub 74.8 7.3 0.00016 40.3 6.3 45 170-219 67-112 (847)
262 TIGR01292 TRX_reduct thioredox 74.2 12 0.00027 32.9 7.1 51 166-219 180-237 (300)
263 PF13434 K_oxygenase: L-lysine 73.7 7.9 0.00017 35.4 5.7 40 176-217 293-338 (341)
264 TIGR02023 BchP-ChlP geranylger 73.7 13 0.00029 34.5 7.3 53 164-220 94-155 (388)
265 TIGR03143 AhpF_homolog putativ 73.2 13 0.00029 36.5 7.5 52 164-219 62-113 (555)
266 PRK06467 dihydrolipoamide dehy 72.3 16 0.00035 35.0 7.7 52 164-219 217-273 (471)
267 PRK12778 putative bifunctional 71.3 13 0.00027 38.2 7.1 49 170-219 616-685 (752)
268 COG0029 NadB Aspartate oxidase 70.9 15 0.00032 35.0 6.7 65 153-218 124-194 (518)
269 PRK12809 putative oxidoreducta 70.9 13 0.00028 37.2 6.9 46 172-218 499-565 (639)
270 PRK08294 phenol 2-monooxygenas 70.4 24 0.00051 35.4 8.6 62 164-226 143-217 (634)
271 PRK13800 putative oxidoreducta 70.0 19 0.00041 37.8 8.1 55 164-220 141-205 (897)
272 PRK06292 dihydrolipoamide dehy 70.0 17 0.00037 34.6 7.3 52 164-218 212-266 (460)
273 COG3075 GlpB Anaerobic glycero 69.8 11 0.00024 34.0 5.3 60 164-225 260-322 (421)
274 COG0445 GidA Flavin-dependent 68.7 6.9 0.00015 37.7 4.1 57 166-224 104-162 (621)
275 TIGR01372 soxA sarcosine oxida 68.6 21 0.00045 37.9 8.1 57 166-225 355-416 (985)
276 PLN02927 antheraxanthin epoxid 68.4 14 0.0003 37.1 6.3 44 175-221 204-249 (668)
277 TIGR02360 pbenz_hydroxyl 4-hyd 68.3 22 0.00048 33.1 7.5 60 164-226 105-170 (390)
278 PTZ00153 lipoamide dehydrogena 67.9 22 0.00047 35.8 7.6 55 164-219 355-426 (659)
279 PRK13512 coenzyme A disulfide 67.6 15 0.00033 34.8 6.3 44 173-219 69-116 (438)
280 TIGR02028 ChlP geranylgeranyl 67.3 27 0.00058 32.7 7.9 56 164-220 95-160 (398)
281 PRK15317 alkyl hydroperoxide r 66.4 17 0.00036 35.4 6.5 51 167-219 391-448 (517)
282 COG2303 BetA Choline dehydroge 66.2 13 0.00028 36.4 5.7 52 172-225 213-271 (542)
283 TIGR01424 gluta_reduc_2 glutat 65.9 16 0.00036 34.7 6.2 49 165-219 93-141 (446)
284 PRK13984 putative oxidoreducta 65.8 18 0.00038 36.0 6.6 45 173-219 473-537 (604)
285 PRK10262 thioredoxin reductase 65.2 30 0.00064 31.1 7.5 52 164-219 65-116 (321)
286 PRK12770 putative glutamate sy 62.4 27 0.00058 32.0 6.8 50 167-219 215-285 (352)
287 PRK12775 putative trifunctiona 62.4 24 0.00052 37.5 7.1 49 170-219 617-685 (1006)
288 PLN02785 Protein HOTHEAD 62.1 26 0.00056 34.7 6.9 58 168-225 226-295 (587)
289 TIGR01421 gluta_reduc_1 glutat 60.9 25 0.00055 33.5 6.5 46 166-219 95-140 (450)
290 COG1251 NirB NAD(P)H-nitrite r 60.8 14 0.00031 36.9 4.7 45 171-220 68-113 (793)
291 COG0562 Glf UDP-galactopyranos 57.5 10 0.00022 34.0 2.9 110 97-223 133-244 (374)
292 PLN00093 geranylgeranyl diphos 57.3 47 0.001 31.7 7.6 56 164-220 134-199 (450)
293 PRK12779 putative bifunctional 55.9 40 0.00086 35.6 7.3 48 172-219 494-561 (944)
294 TIGR01789 lycopene_cycl lycope 55.1 25 0.00054 32.5 5.3 38 176-219 100-137 (370)
295 PLN02985 squalene monooxygenas 54.7 65 0.0014 31.4 8.2 60 164-226 149-215 (514)
296 KOG1336 Monodehydroascorbate/f 53.4 27 0.00058 33.1 5.0 44 170-218 135-179 (478)
297 COG3486 IucD Lysine/ornithine 53.2 26 0.00057 32.5 4.8 42 176-219 292-339 (436)
298 PRK12771 putative glutamate sy 52.1 56 0.0012 32.2 7.4 48 171-220 314-380 (564)
299 PRK06116 glutathione reductase 51.2 39 0.00084 32.1 6.1 46 166-219 97-142 (450)
300 PRK06444 prephenate dehydrogen 50.0 35 0.00076 28.4 4.8 20 208-227 31-50 (197)
301 PTZ00318 NADH dehydrogenase-li 46.7 54 0.0012 30.9 6.2 50 166-219 66-124 (424)
302 PRK06370 mercuric reductase; V 45.1 56 0.0012 31.2 6.1 44 168-219 100-144 (463)
303 KOG2311 NAD/FAD-utilizing prot 43.7 64 0.0014 30.9 5.8 53 167-220 129-186 (679)
304 TIGR01317 GOGAT_sm_gam glutama 42.9 67 0.0015 31.0 6.3 43 175-218 349-412 (485)
305 KOG2415 Electron transfer flav 40.7 42 0.0009 31.5 4.1 62 164-226 185-264 (621)
306 PLN02546 glutathione reductase 38.8 74 0.0016 31.4 5.9 46 166-219 182-227 (558)
307 KOG1399 Flavin-containing mono 38.7 1E+02 0.0022 29.4 6.6 55 164-220 92-153 (448)
308 PRK07845 flavoprotein disulfid 38.2 97 0.0021 29.6 6.6 49 167-219 97-150 (466)
309 COG3634 AhpF Alkyl hydroperoxi 36.2 62 0.0014 29.6 4.4 57 164-220 268-325 (520)
310 PRK06416 dihydrolipoamide dehy 34.9 98 0.0021 29.5 6.0 48 166-219 96-145 (462)
311 KOG2852 Possible oxidoreductas 33.7 1E+02 0.0022 27.5 5.2 57 164-223 149-211 (380)
312 PRK06327 dihydrolipoamide dehy 33.1 1.4E+02 0.003 28.7 6.7 52 167-220 105-157 (475)
313 PRK12814 putative NADPH-depend 32.2 1.2E+02 0.0026 30.5 6.3 47 173-219 372-436 (652)
314 COG1053 SdhA Succinate dehydro 30.8 79 0.0017 31.2 4.6 56 164-220 140-202 (562)
315 PTZ00367 squalene epoxidase; P 29.6 2E+02 0.0043 28.5 7.2 61 164-225 133-225 (567)
316 PF02006 DUF137: Protein of un 29.6 76 0.0016 25.6 3.5 48 166-216 47-97 (178)
317 PRK09853 putative selenate red 29.4 1.5E+02 0.0033 31.5 6.5 52 174-225 719-784 (1019)
318 PRK05976 dihydrolipoamide dehy 29.1 1.8E+02 0.0038 27.9 6.7 50 168-219 98-153 (472)
319 PF03807 F420_oxidored: NADP o 28.5 52 0.0011 23.2 2.3 21 208-228 61-81 (96)
320 PRK06467 dihydrolipoamide dehy 28.4 1.8E+02 0.0038 28.0 6.6 46 168-219 99-147 (471)
321 PRK05249 soluble pyridine nucl 27.9 1.6E+02 0.0035 28.0 6.2 47 167-219 99-148 (461)
322 PLN02507 glutathione reductase 27.9 1.7E+02 0.0036 28.4 6.3 46 168-219 130-178 (499)
323 COG3573 Predicted oxidoreducta 26.4 2E+02 0.0043 26.3 5.8 52 164-217 151-225 (552)
324 COG3486 IucD Lysine/ornithine 26.4 86 0.0019 29.3 3.7 41 177-218 112-155 (436)
325 COG4635 HemG Flavodoxin [Energ 23.7 83 0.0018 25.2 2.7 79 158-257 12-94 (175)
326 PF06072 Herpes_US9: Alphaherp 23.4 62 0.0013 20.9 1.6 18 92-109 5-22 (60)
327 COG0492 TrxB Thioredoxin reduc 22.0 2.7E+02 0.0059 25.0 6.1 51 166-220 182-238 (305)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=2.4e-36 Score=287.63 Aligned_cols=349 Identities=19% Similarity=0.257 Sum_probs=258.8
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCcc-cceee-cCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhh--
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQY-SEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLP-- 75 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~-~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~-- 75 (355)
+|.++++|+++++++++||+.+...+. ....+ +.+|+... ..+.. +++.|++... +++++.+++.+|+++..
T Consensus 129 ~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~-~~~~~--p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l 205 (569)
T PLN02487 129 LHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGE-LDFRF--PVGAPLHGIKAFLTTNQLEPYDKARNALAL 205 (569)
T ss_pred eeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCEEee-eccCC--CCCchhhhHHHHHcCCCCCHHHHHhhcccc
Confidence 599999999999999999998654433 23323 34454211 11221 4667776555 78999999999998632
Q ss_pred ----HHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCc
Q 018455 76 ----LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (355)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~ 151 (355)
++.++.+.+...+.+...|++|+.+|+++++.+++++++||+|++.++++.+++++|+.+++..|..+ ..+..++
T Consensus 206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~-~~~~~~~ 284 (569)
T PLN02487 206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLF-ATKTEAS 284 (569)
T ss_pred cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-hhcCCcc
Confidence 11121111101233456788999999999988888999999999999999999999999999988653 2244456
Q ss_pred ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCC-CC--eEEEEEe--C--CeEEecCEEEEccChhhHHHh
Q 018455 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQEL 224 (355)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~-~~--~v~~v~~--~--g~~~~ad~VV~a~p~~~~~~l 224 (355)
++.|++||+++.+.+++++.|+++|++|+++++|++|+.+++ +| ++++|++ + ++++.||+||+|+|++.+.+|
T Consensus 285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 789999999977889999999999999999999999999742 12 4778877 3 347899999999999999999
Q ss_pred hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCc------ceeccC-----CCcccee-eEcccccc-cc-cC
Q 018455 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFG-----DSLAWTF-FDLNKIYD-EH-KD 290 (355)
Q Consensus 225 ~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~-----~~~~~~~-~~~~~~~~-~~-~~ 290 (355)
+++. .+..+.+.++.++.+.++++++++||+++..+..-+ .+.+.+ ....|.+ ++.....+ ++ ..
T Consensus 365 lp~~-~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~ 443 (569)
T PLN02487 365 LPEQ-WREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKE 443 (569)
T ss_pred CCch-hhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHccc
Confidence 9875 233455678888988999999999999876432111 012222 1222322 34211111 12 22
Q ss_pred CCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL 354 (355)
Q Consensus 291 ~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~ 354 (355)
.+|+++.+++++++++..++++|+++.++++|.++||.++..++.+..+++++++++.+.||+.
T Consensus 444 ~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~ 507 (569)
T PLN02487 444 GEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMD 507 (569)
T ss_pred CCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCcc
Confidence 4567888888888889999999999999999999999877677888999999999999999975
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2.2e-34 Score=272.22 Aligned_cols=349 Identities=19% Similarity=0.274 Sum_probs=253.0
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCcc-cceeec-CCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHH
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~~-~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~ 77 (355)
+|+|++.|++++++++++|+.+...+. ....+. .+|+... ..+. .+++.|++... +++++.+++.+|+++....
T Consensus 53 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~ 129 (474)
T TIGR02732 53 LHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGE-LDFR--FATGAPFNGLKAFFTTSQLKWVDKLRNALAL 129 (474)
T ss_pred eEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCcccc-cccC--CCCCCchhhhHHHhcCCCCCHHHHHHHHHHh
Confidence 589999999999999999998655444 233342 3343211 1122 24667776555 7889999999999865422
Q ss_pred H--HHh----ccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCc
Q 018455 78 A--AVI----DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (355)
Q Consensus 78 ~--~~~----~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~ 151 (355)
. ... +.+...+.+...+++|+.+|+++++.++..+++||+|++.++++.+++++|+.+++.+++.+. ....++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s 208 (474)
T TIGR02732 130 GTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEAS 208 (474)
T ss_pred hhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcc
Confidence 1 111 111011234457889999999999888888999999999999999999999999998887543 445566
Q ss_pred ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecC--CCC-eEEEEEe-CC---eEEecCEEEEccChhhHHHh
Q 018455 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--ERC-CISDVVC-GK---ETYSAGAVVLAVGISTLQEL 224 (355)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~--~~~-~v~~v~~-~g---~~~~ad~VV~a~p~~~~~~l 224 (355)
.+.+++||+++.+.+++++.|++.|++|+++++|++|+.++ ++. ++++|.+ +| +++.||+||+|+|++.+.+|
T Consensus 209 ~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 209 KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 78899999988888999999999999999999999999864 222 3666766 33 56899999999999999999
Q ss_pred hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCc---c---eeccC-----CCcccee-eEcccccc-ccc-C
Q 018455 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN---A---CSGFG-----DSLAWTF-FDLNKIYD-EHK-D 290 (355)
Q Consensus 225 ~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~---~---~~~~~-----~~~~~~~-~~~~~~~~-~~~-~ 290 (355)
+++.. +..+.+..+..+.+.++++++++|++++..+...+ . +.+.+ ....|.+ ++.....+ ++. .
T Consensus 289 l~~~~-~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (474)
T TIGR02732 289 LPQEW-RQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKE 367 (474)
T ss_pred CChhh-hcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhcc
Confidence 98742 22344557788888999999999998776422100 0 01111 1112322 23221112 232 1
Q ss_pred CCceEEEEEeeCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL 354 (355)
Q Consensus 291 ~~g~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~ 354 (355)
..+.+++++++.+.++.+++++++++.++++|+++||.....+++++.+.++|+|++.+.||+.
T Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~ 431 (474)
T TIGR02732 368 GQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMD 431 (474)
T ss_pred CCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCc
Confidence 2345567777777778889999999999999999999877677888899999999999999975
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1e-32 Score=265.64 Aligned_cols=342 Identities=18% Similarity=0.302 Sum_probs=250.4
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCcc-cceeec-C--CCceecccccccCCCCCCCccccc-cc-cCCCCCHHhhhchh
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQYS-E--EGLEVEFPIFQDLNQLPTPLGTLF-YT-QFSRLPLVDRLTSL 74 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~~-~--~g~~~~~~~~~~~~~~p~p~~~~~-~~-~~~~l~~~~~~~~~ 74 (355)
+|.|++.|+++++|+++||+++...+. ...++. . .+.. +...+.. .+|.|++... ++ ..+.+++.+|+++.
T Consensus 147 ~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~--~~P~~l~~~~~~l~~~~~ls~~~kl~~~ 223 (567)
T PLN02612 147 LHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEF-SRFDFPE--VLPAPLNGIWAILRNNEMLTWPEKIKFA 223 (567)
T ss_pred ceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCce-eeCcCch--hcCChhhhhHHHHhcCccCCHHHHHHHH
Confidence 589999999999999999998765554 223332 1 2221 1111211 2566665444 44 46678999999854
Q ss_pred h-HHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcce
Q 018455 75 P-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153 (355)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~ 153 (355)
. +...... ..+.+..+|++|+.+|++++++++.+.+.+|+|++.++++.+++++|+.+++..+..+ +....++..
T Consensus 224 ~~~~~~~~~---~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~ 299 (567)
T PLN02612 224 IGLLPAIVG---GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKM 299 (567)
T ss_pred HhhhHHhcc---cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceE
Confidence 3 2111111 1233456789999999999999999999999999999999999999999999888875 455556677
Q ss_pred EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccC
Q 018455 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCN 232 (355)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~ 232 (355)
.++.|+..+.++++|++.+++.|++|++|++|++|+.+++ +++++|++ +|++++||+||+|+|++.+++|++.... .
T Consensus 300 ~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~ 377 (567)
T PLN02612 300 AFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-E 377 (567)
T ss_pred eeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-C
Confidence 8888887455889999999999999999999999999765 45556776 6889999999999999999988875421 1
Q ss_pred cHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHH
Q 018455 233 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDD 312 (355)
Q Consensus 233 ~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~e 312 (355)
.+++++++++.+.++++++++|+++++... ...++... +...++++.+...+.+.+++.+++.+++..+++|..++++
T Consensus 378 ~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~-~~~~~~~~-~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sde 455 (567)
T PLN02612 378 IPYFKKLDKLVGVPVINVHIWFDRKLKNTY-DHLLFSRS-PLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDE 455 (567)
T ss_pred cHHHHHHHhcCCCCeEEEEEEECcccCCCC-CceeecCC-CCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHH
Confidence 244556667778889999999999987422 22233322 2223345555544445444556776666677889999999
Q ss_pred HHHHHHHHHHhhhcccCC-----CceeeeeeEEecCCCccccCCCC
Q 018455 313 QVVAKAVSYLSKCIKDFS-----TATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 313 e~~~~~~~~l~~~~p~~~-----~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
|+++.++++|+++||+.. ...++.+.+.+.|.+.+.+.||.
T Consensus 456 ei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~ 501 (567)
T PLN02612 456 DIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNC 501 (567)
T ss_pred HHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCC
Confidence 999999999999998752 25577788999999988887775
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1.1e-30 Score=247.56 Aligned_cols=341 Identities=20% Similarity=0.326 Sum_probs=238.6
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCcc-cceeecC---CCceecccccccCCCCCCCccccc-cc-cCCCCCHHhhhchh
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KSAQYSE---EGLEVEFPIFQDLNQLPTPLGTLF-YT-QFSRLPLVDRLTSL 74 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~-~~~~~~~---~g~~~~~~~~~~~~~~p~p~~~~~-~~-~~~~l~~~~~~~~~ 74 (355)
.|.++++|+++++++++||+.....+. ...++.. +|.. . .+. .+.+|.|++... ++ ..+.+++.+|+++.
T Consensus 53 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (453)
T TIGR02731 53 LHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTF-S--RFD-FPDIPAPFNGVAAILRNNDMLTWPEKIKFA 128 (453)
T ss_pred cceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcce-e--ecc-CCCCCCCHHHHHHHhcCcCCCCHHHHHHHH
Confidence 488899999999999999998655443 2233322 2221 1 121 134556665433 33 24468899998855
Q ss_pred hHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceE
Q 018455 75 PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLV 154 (355)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~ 154 (355)
..+..... . ..+.+..+|++|+.+|+++.++++.+.+.+++|++.++++.+|+++|+.+++..++.++ .+..+....
T Consensus 129 ~~~~~~~~-~-~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~ 205 (453)
T TIGR02731 129 IGLLPAIV-R-GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMA 205 (453)
T ss_pred HHhHHHHh-c-CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeE
Confidence 32222110 0 12334567899999999999999999999999999999999999999999998888753 434444556
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-----EEecCEEEEccChhhHHHhhhcc
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-----TYSAGAVVLAVGISTLQELIKNS 228 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-----~~~ad~VV~a~p~~~~~~l~~~~ 228 (355)
+..|+....+.+++.+.+++.|++|++|++|++|+.+++ +++++|++ +|+ ++.||.||+|+|++.+.+|++..
T Consensus 206 ~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~ 284 (453)
T TIGR02731 206 FLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQP 284 (453)
T ss_pred eecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchh
Confidence 666664333789999999999999999999999987665 45667776 444 78999999999999999998653
Q ss_pred cccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCC
Q 018455 229 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMP 308 (355)
Q Consensus 229 ~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 308 (355)
. +.....+.+.++.+.++++++++++++++.. .+.++..+... ...++.+....++.++++.++++.+..++.+..
T Consensus 285 ~-~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~ 360 (453)
T TIGR02731 285 W-KQMPFFQKLNGLEGVPVINVHIWFDRKLTTV--DHLLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIG 360 (453)
T ss_pred h-hcCHHHHHhhcCCCCcEEEEEEEEccccCCC--CceeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhc
Confidence 2 1123444666777779999999999998732 22233322222 122333322122222445666654445667788
Q ss_pred CCHHHHHHHHHHHHhhhcccC----CCceeeeeeEEecCCCccccCCCC
Q 018455 309 LKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 309 ~~~ee~~~~~~~~l~~~~p~~----~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
+++||+++.++++|+++||.. ...+++++.|.++|++.+.+.||.
T Consensus 361 ~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~ 409 (453)
T TIGR02731 361 RSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGR 409 (453)
T ss_pred CCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCC
Confidence 999999999999999999852 245688899999999998888884
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.98 E-value=6.3e-30 Score=240.38 Aligned_cols=329 Identities=23% Similarity=0.274 Sum_probs=234.5
Q ss_pred CcccccCCchHHHHHHHhCCCCCCC-cc-cceeecCCCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchhhHH
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTG-WM-KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~~~~ 77 (355)
.|.+++.|+++.+|++|||++.... +. ...++..+|..+ .+.. .++|.|+.... +++++.+++.++.++.+.+
T Consensus 42 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (419)
T TIGR03467 42 QHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGRLS---RLRL-SRLPAPLHLARGLLRAPGLSWADKLALARAL 117 (419)
T ss_pred CEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCCce---eecC-CCCCCCHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3889999999999999999986544 22 222332334321 1221 24566665433 5677889999999877655
Q ss_pred HHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEec
Q 018455 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR 157 (355)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
..+.+. ....+|++|+.+|++++++++++++.+++|++.++++.+|+++|+.+++..++..+.....+..+.+++
T Consensus 118 ~~~~~~-----~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
T TIGR03467 118 LALRRT-----RFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPR 192 (419)
T ss_pred HHHHhc-----CccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence 443321 113478899999999988899999999999999999999999999999888765432322334578899
Q ss_pred CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEE-eCCeEEecCEEEEccChhhHHHhhhcccccCcHHH
Q 018455 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (355)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~ 236 (355)
||+++++.++|++.|++.|++|++|++|++|+.++++ +..+. .+|+++.||+||+|+|++++.+|++++. ..
T Consensus 193 gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~--~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~~-----~~ 265 (419)
T TIGR03467 193 VPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG--IRALVLSGGETLPADAVVLAVPPRHAASLLPGED-----LG 265 (419)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc--ceEEEecCCccccCCEEEEcCCHHHHHHhCCCch-----HH
Confidence 9998866677999998899999999999999998753 43223 3678899999999999999999986521 12
Q ss_pred HhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCCCCCCCCCHHHHHH
Q 018455 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVA 316 (355)
Q Consensus 237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~ee~~~ 316 (355)
+.+.++++.++.++++.+++++|.+.....+ ...+..| +++.+... +...++.+.+..++++..++++++++
T Consensus 266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~ 337 (419)
T TIGR03467 266 ALLTALGYSPITTVHLRLDRAVRLPAPMVGL--VGGLAQW-LFDRGQLA-----GEPGYLAVVISAARDLVDLPREELAD 337 (419)
T ss_pred HHHhhcCCcceEEEEEEeCCCcCCCCCeeee--cCCceeE-EEECCcCC-----CCCCEEEEEEecchhhccCCHHHHHH
Confidence 3567778889999999999998632221111 2233444 34422211 12233333333456677889999999
Q ss_pred HHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455 317 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 317 ~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
.++++|+++||......+++..+.+|+++.|.+.||.
T Consensus 338 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 374 (419)
T TIGR03467 338 RIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGL 374 (419)
T ss_pred HHHHHHHHhcCccccCCccceEEEEccCCccccCCcc
Confidence 9999999999865434567778899999988888874
No 6
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.97 E-value=1.5e-28 Score=225.13 Aligned_cols=320 Identities=19% Similarity=0.258 Sum_probs=217.5
Q ss_pred cccccCCchHHHHHHHhCCCCCCCcc--cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHH
Q 018455 2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA 79 (355)
Q Consensus 2 H~~~~~y~~~~~l~~elGl~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 79 (355)
|.|+...+++++|++|||+++...+. ....+..+|+ ++ ++|.+. . +..|.+...+.+...+.+..
T Consensus 56 ~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~gk------l~---p~P~~~-i---~~ip~~~~~~~~~~~~~~~~ 122 (444)
T COG1232 56 HHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYDGK------LH---PIPTPT-I---LGIPLLLLSSEAGLARALQE 122 (444)
T ss_pred hheecchHHHHHHHHHhCcHHhhccCCcccceEeeCCc------EE---ECCccc-e---eecCCccccchhHHHHHHHh
Confidence 55666679999999999999877755 2442226675 33 344333 1 12223322233333332223
Q ss_pred HhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC----------
Q 018455 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---------- 149 (355)
Q Consensus 80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~---------- 149 (355)
... .+.+...++.|+++|++++ +++++.++++.|++.++|+.+++++|+....+.+... ....+
T Consensus 123 ~~~----~~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~-e~~~~s~~~g~~~~~ 196 (444)
T COG1232 123 FIR----PKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARA-ERKYGSLLRGAKKEG 196 (444)
T ss_pred hhc----ccCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhh-hhhhcchhhhhhhcc
Confidence 222 2234457889999999998 9999999999999999999999999999555444332 11000
Q ss_pred -------CcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455 150 -------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (355)
Q Consensus 150 -------~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~ 222 (355)
...+.+++||+++ +.+++++.+... |+++++|++|..+..+ .+.+..+|+++.||.||+|+|++.+.
T Consensus 197 ~~~~~~~~~~~~~~~gG~~~-l~~al~~~l~~~---i~~~~~V~~i~~~~~~--~~~~~~~g~~~~~D~VI~t~p~~~l~ 270 (444)
T COG1232 197 LPKQSLKKEKFGYLRGGLQS-LIEALAEKLEAK---IRTGTEVTKIDKKGAG--KTIVDVGGEKITADGVISTAPLPELA 270 (444)
T ss_pred CcccccccccccccCccHHH-HHHHHHHHhhhc---eeecceeeEEEEcCCc--cEEEEcCCceEEcceEEEcCCHHHHH
Confidence 1135678999999 779999888654 9999999999998542 44445578899999999999999999
Q ss_pred HhhhcccccCcHHHHhhccCCcccEEEEEEEEccC--CCCCCCCcceeccCCC-ccceeeEcccccccccCCCceEEEEE
Q 018455 223 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK--VTVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQAD 299 (355)
Q Consensus 223 ~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~ 299 (355)
+++++... . ....++.+.+++++.++++.+ ...+.....++..+.+ +..++|+ |+..|...+.+.+++.+.
T Consensus 271 ~ll~~~~~--~---~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~ 344 (444)
T COG1232 271 RLLGDEAV--S---KAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVE 344 (444)
T ss_pred HHcCCcch--h---hhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEE
Confidence 99987321 1 234567777888899999886 1111212222223333 4454554 555565442244566555
Q ss_pred ee-CCC-CCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455 300 FY-HAN-ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL 354 (355)
Q Consensus 300 ~~-~~~-~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~ 354 (355)
++ +.+ ....+++||+++.++++|.++++.... ++.++++||++++|+|.+|+.
T Consensus 345 ~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~ 399 (444)
T COG1232 345 FGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD--PVFVEVTRWKYAMPQYEVGHL 399 (444)
T ss_pred eecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc--hhheeeeeccccCCccchhHH
Confidence 55 333 334678999999999999999986543 348999999999999999964
No 7
>PRK07233 hypothetical protein; Provisional
Probab=99.96 E-value=2.1e-26 Score=217.49 Aligned_cols=327 Identities=20% Similarity=0.280 Sum_probs=223.0
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCccc--ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (355)
.|.+++.++++.+|+++||++....+.. ..++ .+|+.+ +++.|.. +++++.+++.++++......
T Consensus 52 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 118 (434)
T PRK07233 52 YHHIFKSDEALLELLDELGLEDKLRWRETKTGYY-VDGKLY---------PLGTPLE---LLRFPHLSLIDKFRLGLLTL 118 (434)
T ss_pred hhhhccccHHHHHHHHHcCCCCceeeccCceEEE-ECCeEe---------cCCCHHH---HHcCCCCCHHHHHHhHHHHH
Confidence 4888999999999999999985443331 2222 334321 1222222 34556677888887543222
Q ss_pred HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC--CCcceEEe
Q 018455 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWC 156 (355)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~--~~~~~~~~ 156 (355)
.... .....++|++|+.+|++++ .+++..+.+++|++..+++.+++++|+.+++..+........ ......++
T Consensus 119 ~~~~----~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T PRK07233 119 LARR----IKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL 193 (434)
T ss_pred hhhh----cccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence 2111 1123357889999999997 678888999999999999999999999988776654311111 12246789
Q ss_pred cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccccCcHHH
Q 018455 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (355)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~ 236 (355)
+||++. ++++|++.+++.|++|++|++|++|+.+++ +++.+..++++++||+||+|+|++.+.++++..+ ....
T Consensus 194 ~gG~~~-l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~ 267 (434)
T PRK07233 194 EGGFAT-LIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVL 267 (434)
T ss_pred CCCHHH-HHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHH
Confidence 999988 889999999999999999999999998774 3655666788999999999999999998885422 1222
Q ss_pred HhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEE-EEeeC-CCCCCCCCHHHH
Q 018455 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQ-ADFYH-ANELMPLKDDQV 314 (355)
Q Consensus 237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~-~~~~~~~~~ee~ 314 (355)
..++++.+.++.++++++++++.. ..+-.....+.++.. ++..+...+...+++++.+. ..+.. ...+..++++++
T Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 345 (434)
T PRK07233 268 ARLRRIDYQGVVCMVLKLRRPLTD-YYWLNINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEEL 345 (434)
T ss_pred hhhcccCccceEEEEEEecCCCCC-CceeeecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHH
Confidence 356677788888999999988652 111000011123333 23333333322212334332 22332 233456789999
Q ss_pred HHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 315 ~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
++.++++|++++|++...++++..|.+|+++.|.+.||.
T Consensus 346 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~ 384 (434)
T PRK07233 346 LDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGY 384 (434)
T ss_pred HHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCch
Confidence 999999999999987656788999999999999999883
No 8
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.95 E-value=3.1e-25 Score=210.91 Aligned_cols=324 Identities=13% Similarity=0.137 Sum_probs=214.5
Q ss_pred cccccCCchHHHHHHHhCCCCCCCcc--c-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455 2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (355)
Q Consensus 2 H~~~~~y~~~~~l~~elGl~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (355)
|.+..+++++++|+++||+++...+. + ..+| .+|+.+..+ ... .+..|.+...+++.+.+++.+|++.+.
T Consensus 61 ~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~~~~~~~p-~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~--- 133 (463)
T PRK12416 61 DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIY-SDNTLHPIP-SDT--IFGIPMSVESLFSSTLVSTKGKIVALK--- 133 (463)
T ss_pred HHHhcCCHHHHHHHHHcCCccceecCCCCceEEE-ECCeEEECC-CCC--eecCCCChHHhhcCCcCCHHHHHHhhh---
Confidence 67778899999999999998654332 1 2223 233321100 000 011233333356677788888776443
Q ss_pred HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH----------Hh--
Q 018455 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LA-- 146 (355)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~----------~~-- 146 (355)
.+... . ....+++|+.+|++++ +++++.+.+++|++.++|+.+++++|+...+..+..+. ..
T Consensus 134 ~~~~~---~--~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 207 (463)
T PRK12416 134 DFITK---N--KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK 207 (463)
T ss_pred hhccC---C--CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence 22211 1 1125789999999986 88999999999999999999999999876554432210 00
Q ss_pred ----cCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 147 ----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 147 ----~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
...+..+.+++||+++ ++++|++.+.+ ++|++|++|++|+.+++ ++ .|++ +|+++.||+||+|+|++.+
T Consensus 208 ~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~~--~~i~~~~~V~~I~~~~~--~~-~v~~~~g~~~~ad~VI~a~p~~~~ 281 (463)
T PRK12416 208 KQFQSAGNKKFVSFKGGLST-IIDRLEEVLTE--TVVKKGAVTTAVSKQGD--RY-EISFANHESIQADYVVLAAPHDIA 281 (463)
T ss_pred hccCCCCCCceEeeCCCHHH-HHHHHHHhccc--ccEEcCCEEEEEEEcCC--EE-EEEECCCCEEEeCEEEECCCHHHH
Confidence 0112335678999999 77899888754 68999999999999874 34 5665 6778999999999999999
Q ss_pred HHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCC-CC-CCcceeccCCCc--cceeeEcccccccccCCCceEEE
Q 018455 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV-PN-VSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQ 297 (355)
Q Consensus 222 ~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~l~ 297 (355)
.+|++++.++ ..+.++.+.++.+++++|+++.+. +. ..+.+...+... ..+.+. ++.++... +++.++.
T Consensus 282 ~~ll~~~~l~-----~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~ 354 (463)
T PRK12416 282 ETLLQSNELN-----EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLV 354 (463)
T ss_pred HhhcCCcchh-----HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEE
Confidence 9998765432 245677778999999999976441 11 112221212221 112222 23333322 3444444
Q ss_pred EEee-----CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455 298 ADFY-----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 298 ~~~~-----~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
..|+ .++++.+++++|+.+.++++|+++|+.. ..++.+.+++|.+++|.+.+|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~ 413 (463)
T PRK12416 355 RMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEH 413 (463)
T ss_pred EEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCH
Confidence 4443 2234667899999999999999999743 3578899999999999999885
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.95 E-value=7.9e-25 Score=208.28 Aligned_cols=318 Identities=14% Similarity=0.152 Sum_probs=213.2
Q ss_pred cccccCCchHHHHHHHhCCCCCCCcc--c-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455 2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (355)
Q Consensus 2 H~~~~~y~~~~~l~~elGl~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (355)
|.+...|+++++|+++||+++...+. . ..++..+|+. . +.|.+...+++...+++.++++...
T Consensus 60 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~------~-----~~p~~~~~~~~~~~~~~~~~~~~~~--- 125 (462)
T TIGR00562 60 DSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKL------M-----PVPTKIAPFVKTGLFSLGGKLRAGM--- 125 (462)
T ss_pred cccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCce------e-----cCCCChHHHhcCCCCCchhhHHhhh---
Confidence 78899999999999999998654331 1 2222222432 1 1233333344555667777776431
Q ss_pred HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH----------HHhcC
Q 018455 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI----------ILAHQ 148 (355)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~----------~~~~~ 148 (355)
.... .. ....++|+.+|++++ +++++.+.+++|++.++|+.+++++|+.+++..+... +....
T Consensus 126 ~~~~---~~---~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 198 (462)
T TIGR00562 126 DFIR---PA---SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR 198 (462)
T ss_pred hhcc---CC---CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc
Confidence 1111 01 023459999999987 8999999999999999999999999999876544211 00000
Q ss_pred --------------CCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEE
Q 018455 149 --------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVV 213 (355)
Q Consensus 149 --------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV 213 (355)
.+.....++||+++ +++++++.+. .++|++|++|++|..++++ + .|++ +|+++.||+||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~--~-~v~~~~g~~~~ad~VI 272 (462)
T TIGR00562 199 NLPQGSGLQLTAKKQGQDFQTLATGLET-LPEEIEKRLK--LTKVYKGTKVTKLSHRGSN--Y-TLELDNGVTVETDSVV 272 (462)
T ss_pred ccCccccccccccccCCceEecchhHHH-HHHHHHHHhc--cCeEEcCCeEEEEEecCCc--E-EEEECCCcEEEcCEEE
Confidence 01114557899988 7788887774 2789999999999987753 4 5666 56789999999
Q ss_pred EccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCc--ceeccC---CCccceeeEcccccccc
Q 018455 214 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN--ACSGFG---DSLAWTFFDLNKIYDEH 288 (355)
Q Consensus 214 ~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~ 288 (355)
+|+|++.+..|+++.+ ....+.+.++.+.++.++.++|+++.+.....+ .+...+ ...++ +++ +...|..
T Consensus 273 ~t~P~~~~~~ll~~~~---~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~-s~~~p~~ 347 (462)
T TIGR00562 273 VTAPHKAAAGLLSELS---NSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFT-SKLFPNR 347 (462)
T ss_pred ECCCHHHHHHHhcccC---HHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEE-ccccCCc
Confidence 9999999999986532 233346778889999999999987754211112 111111 12233 455 3333443
Q ss_pred cCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455 289 KDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 289 ~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
.+++.+++.+.+. .+.++.+++++++++.++++|.++++. . .++.+..+++|++|.|.+.+|+
T Consensus 348 ~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi-~-~~p~~~~v~rw~~a~P~~~~g~ 412 (462)
T TIGR00562 348 APPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNI-N-NEPEMLCVTRWHRAIPQYHVGH 412 (462)
T ss_pred CCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCC-C-CCCcEEEEeEccccCCCCCCCh
Confidence 3223344433232 234566789999999999999999973 3 2377889999999999999996
No 10
>PRK07208 hypothetical protein; Provisional
Probab=99.93 E-value=2e-23 Score=199.47 Aligned_cols=322 Identities=15% Similarity=0.105 Sum_probs=205.6
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCcc--cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (355)
.|.++..++++++|++|||........ ...++ .+|+. . .+ |++....+ ..+++.++++...
T Consensus 57 ~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~g~~------~---~~--p~~~~~~l--~~~~~~~~~~~~~--- 119 (479)
T PRK07208 57 GHRFFSKSPEVMDLWNEILPDDDFLLRPRLSRIY-YRGKF------F---DY--PLKAFDAL--KNLGLWRTAKCGA--- 119 (479)
T ss_pred CceeccCCHHHHHHHHHhcCCCccccccccceEE-ECCEE------e---cC--CcchhHHH--HhCCHhHHHHHHH---
Confidence 388999999999999999974322211 12222 24431 1 12 22222222 2344445444221
Q ss_pred HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHH---------HHHHHhc--
Q 018455 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAH-- 147 (355)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~---------~~~~~~~-- 147 (355)
..... ......|++|+.+|++++ +++++.+.+++|++.++|+.+++++|+.+++..+ +..+...
T Consensus 120 ~~~~~----~~~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (479)
T PRK07208 120 SYLKA----RLRPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLG 194 (479)
T ss_pred HHHHH----hcCCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhccc
Confidence 11110 000113679999999986 8999999999999999999999999998755332 1111110
Q ss_pred -------C-C--CcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEE
Q 018455 148 -------Q-K--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAV 212 (355)
Q Consensus 148 -------~-~--~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~V 212 (355)
. . ...+.+++||+++ ++++|++.+++.|++|++|++|++|..+++ +.++.++. +|+ ++.||+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~p~gG~~~-l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~V 272 (479)
T PRK07208 195 LKRRNKEVETSLIEEFRYPKLGPGQ-LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQV 272 (479)
T ss_pred ccccCCCccccceeEEeCCCCCcch-HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEE
Confidence 0 0 1245678999999 789999999999999999999999999875 33434443 242 6899999
Q ss_pred EEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCC--CccceeeEcccccccccC
Q 018455 213 VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKD 290 (355)
Q Consensus 213 V~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (355)
|+|+|++.+.+++.++ ++ ......+.++.+.++++++++++++...+. ..++-.+. .++. +...+...+...
T Consensus 273 I~a~p~~~l~~~l~~~-~~-~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~~~~r-~~~~~~~~~~~~- 346 (479)
T PRK07208 273 ISSMPLRELVAALDPP-PP-PEVRAAAAGLRYRDFITVGLLVKELNLFPD--NWIYIHDPDVKVGR-LQNFNNWSPYLV- 346 (479)
T ss_pred EECCCHHHHHHhcCCC-CC-HHHHHHHhCCCcceeEEEEEEecCCCCCCC--ceEEecCCCCccce-ecccccCCcccC-
Confidence 9999999988887632 22 222234567888888999999998754221 11111111 1111 111112112222
Q ss_pred CCc--eEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455 291 DSA--TVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 291 ~~g--~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
|.| ..+.+.++ ..++.+.++++++++.++++|+++.+ +....++.++++++++++|.+.+|+
T Consensus 347 p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~ 412 (479)
T PRK07208 347 PDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTY 412 (479)
T ss_pred CCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchH
Confidence 233 23322232 33455688999999999999999743 4356789999999999999999875
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=6.4e-23 Score=194.68 Aligned_cols=324 Identities=16% Similarity=0.166 Sum_probs=207.7
Q ss_pred cccccCCchHHHHHHHhCCCCCCCcc--c-ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455 2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (355)
Q Consensus 2 H~~~~~y~~~~~l~~elGl~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (355)
|.+.+.++++++|+++||++...... + ..++ .+|+.+. +..-.....|.....++..+.++..++++...
T Consensus 56 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~g~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (451)
T PRK11883 56 ESFLARKPSAPALVKELGLEDELVANTTGQSYIY-VNGKLHP---IPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAA--- 128 (451)
T ss_pred HHhcCCcHHHHHHHHHcCCccceecCCCCcceEE-ECCeEEE---CCCCCeeccCCCchhhhcCCCCCHHHHHHhhC---
Confidence 77888999999999999998543221 2 2233 3454321 11000011122121223345566666665321
Q ss_pred HHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH----------h--
Q 018455 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A-- 146 (355)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~----------~-- 146 (355)
... ...+...+++|+.+|+++. ++++.++.++.|++.++|+.+++++|+..++..+..... .
T Consensus 129 ~~~-----~~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (451)
T PRK11883 129 DLR-----PPRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKAL 202 (451)
T ss_pred ccc-----CCCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhc
Confidence 110 1112235789999999986 899999999999999999999999999876654432110 0
Q ss_pred --c--CCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 147 --H--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 147 --~--~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
. ..+....+++||+++ +.+.+++.+... +|++|++|++|+.++++ + .|++ +|+++.||+||+|+|+..+
T Consensus 203 ~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~--~-~v~~~~g~~~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 203 PKEKKKTKGVFGTLKGGLQS-LIEALEEKLPAG--TIHKGTPVTKIDKSGDG--Y-EIVLSNGGEIEADAVIVAVPHPVL 276 (451)
T ss_pred cccCCCCCCceEeeccHHHH-HHHHHHHhCcCC--eEEeCCEEEEEEEcCCe--E-EEEECCCCEEEcCEEEECCCHHHH
Confidence 0 012234568999998 777787766432 89999999999988742 4 4655 7788999999999999999
Q ss_pred HHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCC-CCCCCcceeccCC--CccceeeEcccccccccCCCc-eEEE
Q 018455 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSA-TVIQ 297 (355)
Q Consensus 222 ~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g-~~l~ 297 (355)
.+++..+. ..+.++++.+.++.+++++|++++. .+...+.++..+. ++..+.++ +...+... +.+ .++.
T Consensus 277 ~~l~~~~~-----~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~-p~g~~~~~ 349 (451)
T PRK11883 277 PSLFVAPP-----AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTT-PEGKVLLR 349 (451)
T ss_pred HHhccChh-----HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCC-CCCcEEEE
Confidence 99866432 1235677888899999999998852 1222232333222 22233343 33323322 333 3433
Q ss_pred EEee-CC-CCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCC
Q 018455 298 ADFY-HA-NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 353 (355)
Q Consensus 298 ~~~~-~~-~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~ 353 (355)
..+. .. .....++++++++.++++|+++++.. .++.+..+++|.++.|.+.||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~ 405 (451)
T PRK11883 350 LYVGRPGDEAVVDATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGH 405 (451)
T ss_pred EecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccH
Confidence 3222 22 23456789999999999999999642 3456889999999999999985
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.92 E-value=6.7e-23 Score=196.64 Aligned_cols=321 Identities=13% Similarity=0.152 Sum_probs=210.2
Q ss_pred cccccCCchHHHHHHHhCCCCCCCcc--c--ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHH
Q 018455 2 QGFWYPFRNIFSLVDELGIKPFTGWM--K--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM 77 (355)
Q Consensus 2 H~~~~~y~~~~~l~~elGl~~~~~~~--~--~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~ 77 (355)
|.+...++.+..|+++ |+++...+. . ..++ .+|+. . ++ |.+...++..+.+++.+|+++....
T Consensus 67 ~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~-~~g~~------~---~~--p~~~~~~~~~~~~~~~~~~~~~~~~ 133 (496)
T PLN02576 67 NSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVV-WNGKL------R---PL--PSNPIDLPTFDLLSAPGKIRAGLGA 133 (496)
T ss_pred chhccCcHHHHHHHHc-CChhheecCCCCceEEEE-ECCEE------E---Ec--CCChHHhcCcCcCChhHHHHHhHHH
Confidence 7888999999999988 998544332 1 1222 34542 1 12 2222234456678888888754322
Q ss_pred HHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH-----------H--
Q 018455 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----------I-- 144 (355)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~-----------~-- 144 (355)
..+.. .. ...+++|+.+|++++ ++++.++.+++|++.++|+.+++++|+..++..+... +
T Consensus 134 ~~~~~---~~---~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~ 206 (496)
T PLN02576 134 FGWKR---PP---PPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKA 206 (496)
T ss_pred hhccC---CC---CCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHh
Confidence 11111 01 125789999999987 8999999999999999999999999999876654321 0
Q ss_pred -Hhc---------------CCCcceEEecCCcchHHHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC
Q 018455 145 -LAH---------------QKNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK 204 (355)
Q Consensus 145 -~~~---------------~~~~~~~~~~gg~~~~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---~g 204 (355)
... ..+.....++||+++ |+++|++.+ + ++|++|++|++|+.+++ +. +.|++ +|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~-~~v~~~~~~g 280 (496)
T PLN02576 207 IQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQT-LPDALAKRL---GKDKVKLNWKVLSLSKNDD-GG-YSLTYDTPEG 280 (496)
T ss_pred hhhhcccccccccccccccccCCeeEeccchHHH-HHHHHHHhh---CcCcEEcCCEEEEEEECCC-Cc-EEEEEecCCC
Confidence 000 011224567899998 778887665 4 68999999999998875 22 23443 34
Q ss_pred -eEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCC-----CC-c--ceeccCC---
Q 018455 205 -ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VS-N--ACSGFGD--- 272 (355)
Q Consensus 205 -~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-----~~-~--~~~~~~~--- 272 (355)
+++.||+||+|+|+..+..|+++.. ......+.++.+.++.+++++|+++.+... +. . .+.....
T Consensus 281 ~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 357 (496)
T PLN02576 281 KVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVK 357 (496)
T ss_pred ceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCc
Confidence 4799999999999999999987532 122335678888899999999998765310 11 1 0100000
Q ss_pred CccceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCcccc
Q 018455 273 SLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF 349 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~ 349 (355)
..++ +++ +...|+.. +.+..+...|. .++.+..++++++++.++++|+++++......+....+++|++++|.+
T Consensus 358 ~lg~-~~~-s~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~ 434 (496)
T PLN02576 358 TLGT-IYS-SSLFPDRA-PEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQY 434 (496)
T ss_pred eEEE-Eee-cCcCCCCC-CCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCC
Confidence 1122 343 34444433 23333323344 235677889999999999999999974221234556788999999999
Q ss_pred CCCCC
Q 018455 350 FPGSL 354 (355)
Q Consensus 350 ~pg~~ 354 (355)
.+|++
T Consensus 435 ~~g~~ 439 (496)
T PLN02576 435 LLGHL 439 (496)
T ss_pred CcCHH
Confidence 99863
No 13
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=5.7e-22 Score=181.13 Aligned_cols=344 Identities=21% Similarity=0.272 Sum_probs=247.3
Q ss_pred CcccccCCchHHHHHHHhCCCCCCCccc-ceeec--C--CCceecccccccCCCCCCCccccc-cccCCCCCHHhhhchh
Q 018455 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS--E--EGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSL 74 (355)
Q Consensus 1 ~H~~~~~y~~~~~l~~elGl~~~~~~~~-~~~~~--~--~g~~~~~~~~~~~~~~p~p~~~~~-~~~~~~l~~~~~~~~~ 74 (355)
+|+||++|+|+++|++|++.+..+++.+ ...+. . .|-. .++.. +.-|.|+.... +++.+.+++++|++++
T Consensus 54 lh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~-~~~p~p~~~~~~~l~~~~~~~~~~~~~~ 129 (485)
T COG3349 54 LHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAI---GRFAR-PDAPQPTNGLKAFLRLPQLPRREKIRFV 129 (485)
T ss_pred eEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcc---ccccc-CCCCCcchhhhhhhhccccCHHHHhHHh
Confidence 5999999999999999999997776663 44441 1 1221 12322 23556776666 7889999999999953
Q ss_pred -hHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcce
Q 018455 75 -PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153 (355)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~ 153 (355)
++...... ..+.++++|+.|++||+++++.++......|.|++......+++.+|++.++.++..++.....+...
T Consensus 130 ~~l~~~~~g---~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~ 206 (485)
T COG3349 130 LRLGDAPIG---ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASIL 206 (485)
T ss_pred hccccccch---hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchh
Confidence 32222110 14567889999999999999999999999999999999999999999999988887765444345556
Q ss_pred EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEeCCeE---EecCEEEEccChhhHHHhhhcc
Q 018455 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCGKET---YSAGAVVLAVGISTLQELIKNS 228 (355)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~~g~~---~~ad~VV~a~p~~~~~~l~~~~ 228 (355)
.+++|+..+.+..++.+.+.+.|.++++..+|.+|..+... .+++++.+.+.. ..++.|+.+...+.+..++++.
T Consensus 207 ~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~ 286 (485)
T COG3349 207 RNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSE 286 (485)
T ss_pred hhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccc
Confidence 77889998888899999999999999999999999987521 347777765543 4456666676667777776665
Q ss_pred cccCcHHHHhhccCCcccEEEEEEEEccCCCCCCC-------CcceeccCCCccceeeEcccccccccCCC-ceEEEEEe
Q 018455 229 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-------SNACSGFGDSLAWTFFDLNKIYDEHKDDS-ATVIQADF 300 (355)
Q Consensus 229 ~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~ 300 (355)
.. +...+.++..+...++.+++++++...+.... .+..++ ..+.+.++++....++.+..++ ++.+....
T Consensus 287 W~-~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s-~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~ 364 (485)
T COG3349 287 WP-KWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWS-DDTLGGVVADLALTSPDYVEPGAGCYLEKVL 364 (485)
T ss_pred cc-ccccccccccccccceeEEEEeecCccccccccchhhhhhccccc-cccCCceeeeccccchhhccccchhhhhhhh
Confidence 32 23444566666777999999999976542211 111111 1233334566555444443222 23444455
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCC
Q 018455 301 YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSL 354 (355)
Q Consensus 301 ~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~ 354 (355)
+++..|...+++++.....+++...+|...+.+ ....+.+.+.++....||++
T Consensus 365 ~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~ 417 (485)
T COG3349 365 APGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSY 417 (485)
T ss_pred cccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCcc
Confidence 577788888999999999999999998766555 77889999999999999975
No 14
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.79 E-value=1.5e-17 Score=147.15 Aligned_cols=252 Identities=12% Similarity=0.137 Sum_probs=175.3
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH--------------hcCCC-------
Q 018455 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AHQKN------- 150 (355)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~--------------~~~~~------- 150 (355)
+..++||++|++|+ +++++.+++++|||+++|++|++++|+..++.-+...-. +....
T Consensus 152 ~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~ 230 (491)
T KOG1276|consen 152 PSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETAL 230 (491)
T ss_pred CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchh
Confidence 35689999999997 999999999999999999999999999987765543200 00000
Q ss_pred --------cceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccCh
Q 018455 151 --------FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGI 218 (355)
Q Consensus 151 --------~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~ 218 (355)
....-.+||++. +.+++.+.|.+..+.|.++.+++.+.....|+ |.+++ ++ ..+..++++.|+|+
T Consensus 231 ~~~~~~e~~~~~sl~gGle~-lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~--~~~tl~~~~~~~~~~~~~~~~t~~~ 307 (491)
T KOG1276|consen 231 SAQAKKEKWTMFSLKGGLET-LPKALRKSLGEREVSISLGLKLSGNSKSRSGN--WSLTLVDHSGTQRVVVSYDAATLPA 307 (491)
T ss_pred hhhhcccccchhhhhhhHhH-hHHHHHHHhcccchhhhcccccccccccccCC--ceeEeEcCCCceeeeccccccccch
Confidence 001225799988 88999999998889999999999999876532 35555 33 24456666679999
Q ss_pred hhHHHhhhcccccCcHHHHhhccCCcccEEEEEEEEccC-CCCC-CCCcceec--cC---CCccceeeEcccccccccCC
Q 018455 219 STLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVP-NVSNACSG--FG---DSLAWTFFDLNKIYDEHKDD 291 (355)
Q Consensus 219 ~~~~~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~~-~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ 291 (355)
..++++++.... .....+..++|.++..|.+.|..+ ...+ ...+.+.. .. ..++ ++|| +..+|... +
T Consensus 308 ~k~a~ll~~~~~---sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifd-S~~Fp~~~-~ 381 (491)
T KOG1276|consen 308 VKLAKLLRGLQN---SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFD-SMLFPDRS-P 381 (491)
T ss_pred HHhhhhccccch---hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEee-cccCCCCC-C
Confidence 999999887532 222356788999999999999774 2211 11222222 11 1234 4788 55556544 2
Q ss_pred CceEEEEEeeCC---CCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccccCCCCCC
Q 018455 292 SATVIQADFYHA---NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSLL 355 (355)
Q Consensus 292 ~g~~l~~~~~~~---~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~ 355 (355)
.+.++...+... ......|.||+++.+.++|.+++.. .+ .+....++-|+.++|+|..|+++
T Consensus 382 s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi-~~-~P~~~~v~l~~~ciPqy~vGh~~ 446 (491)
T KOG1276|consen 382 SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGI-SN-KPVSVNVHLWKNCIPQYTVGHDD 446 (491)
T ss_pred CceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCC-CC-CcccccceehhhcccceecchHH
Confidence 223332333321 2234568999999999999999963 32 37778888999999999999763
No 15
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.74 E-value=9.6e-17 Score=138.41 Aligned_cols=224 Identities=16% Similarity=0.059 Sum_probs=146.1
Q ss_pred Cccccc-CCchHHHHHHHhCCCCCCCcccceee-cCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHH
Q 018455 1 MQGFWY-PFRNIFSLVDELGIKPFTGWMKSAQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (355)
Q Consensus 1 ~H~~~~-~y~~~~~l~~elGl~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~ 78 (355)
||++.. .||++.+|++++|+++.....+..+- +.+|.+|+ . ...+.++.... -..+. -++.++++
T Consensus 64 fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~-----g-~tgl~~L~aqk---~n~l~----pRf~~mla 130 (447)
T COG2907 64 FIVYNERTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYS-----G-LTGLAGLLAQK---RNLLR----PRFPCMLA 130 (447)
T ss_pred eEEecCCCcchHHHHHHHcCCCCcccceeEEEEecCCceeec-----c-CCCccchhhcc---ccccc----hhHHHHHH
Confidence 577777 99999999999999976555554443 23344432 1 01112222111 00010 11222233
Q ss_pred HHhccC---CChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC----Cc
Q 018455 79 AVIDFD---NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NF 151 (355)
Q Consensus 79 ~~~~~~---~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~----~~ 151 (355)
+++++. ..+.+.....++|+.+||+++++++.+++.++.||..++|+.+..+++...++..+..+ .+++- +.
T Consensus 131 eiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~-~nhGll~l~~r 209 (447)
T COG2907 131 EILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT-DNHGLLYLPKR 209 (447)
T ss_pred HHHHHhhhhccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH-hccCceecCCC
Confidence 333322 11222334568999999999999999999999999999999999999998888777654 23221 11
Q ss_pred ceE-EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhcccc
Q 018455 152 DLV-WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSIL 230 (355)
Q Consensus 152 ~~~-~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~l~~~~~l 230 (355)
..+ ...||... .+++|. +..+++|+++++|.+|.+-.|| |+.+..+|++.++|+||+|+.++++..|++++..
T Consensus 210 p~wrtV~ggS~~-yvq~la---a~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~sp 283 (447)
T COG2907 210 PTWRTVAGGSRA-YVQRLA---ADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALLDEPSP 283 (447)
T ss_pred CceeEcccchHH-HHHHHh---ccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhcCCCCH
Confidence 112 24577766 555555 3446789999999999999885 5334446999999999999999999999988742
Q ss_pred cCcHHHHhhccCCcccE
Q 018455 231 CNREEFLKVLNLASIDV 247 (355)
Q Consensus 231 ~~~~~~~~~~~l~~~~~ 247 (355)
...+-+..+.|+..
T Consensus 284 ---~e~qll~a~~Ys~n 297 (447)
T COG2907 284 ---EERQLLGALRYSAN 297 (447)
T ss_pred ---HHHHHHHhhhhhhc
Confidence 22234566666543
No 16
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.70 E-value=4.8e-15 Score=142.15 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=145.6
Q ss_pred cccccHHHHHHHhC-CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHH
Q 018455 93 YDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 171 (355)
Q Consensus 93 ~d~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~ 171 (355)
+...|+.+|+++++ +.++.++.++...+....+.+|++.++.+.+..+..+ .. .....+++||+++ |+++|++.
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~G~~~~~GG~~~-l~~aL~~~ 241 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QA--PHGLWHLHGSMQT-LSDRLVEA 241 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--cc--CCCceeecCcHHH-HHHHHHHH
Confidence 45689999999863 3444456677765544456678888887765444321 11 1234679999999 88999999
Q ss_pred HHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-----eEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCcc
Q 018455 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 245 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-----~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~ 245 (355)
++++|++|+++++|++|..++ +++.+|.+ ++ +++.||+||+|+|+..+.+|++++.++. ...+.+++++++
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~s 318 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPP-GYRKRLKKLPEP 318 (492)
T ss_pred HHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCH-HHHHHHhcCCCC
Confidence 999999999999999999987 34555654 44 5789999999999999988887644321 223355666654
Q ss_pred c-EEEEEEEEccCC-CCCCCCcceeccCCCccceeeEcccccccccCCCc-eEEEE-EeeCCCCCCCC-------CHHHH
Q 018455 246 D-VVSVKLWFDKKV-TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQA-DFYHANELMPL-------KDDQV 314 (355)
Q Consensus 246 ~-~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~-~~~~~~~~~~~-------~~ee~ 314 (355)
+ .+++++++++.. .........+..+. .+..+...+...+..+ |+| +.+.+ ++.+...|..+ -++++
T Consensus 319 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~a-P~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~ 396 (492)
T TIGR02733 319 SGAFVFYLGVKRAALPVDCPPHLQFLSDH-QGSLFVSISQEGDGRA-PQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY 396 (492)
T ss_pred CceEEEEEeecccccCCCCCcceeeccCC-CceEEEEeCCccccCC-CCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence 4 568899998742 11111111111121 1122222222223333 444 44322 22232233221 24568
Q ss_pred HHHHHHHHhhhcccCCCceeeee
Q 018455 315 VAKAVSYLSKCIKDFSTATVMDH 337 (355)
Q Consensus 315 ~~~~~~~l~~~~p~~~~~~~~~~ 337 (355)
.+.+++.+++++|++++ .++..
T Consensus 397 ~~~il~~le~~~p~l~~-~i~~~ 418 (492)
T TIGR02733 397 TQTIIERLGHYFDLLEE-NWVHV 418 (492)
T ss_pred HHHHHHHHHHHCCCccc-cEEEE
Confidence 88899999999999864 44433
No 17
>PLN02268 probable polyamine oxidase
Probab=99.69 E-value=5.4e-15 Score=139.70 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=140.8
Q ss_pred hcccccHHHHHHHhC----------CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcc
Q 018455 92 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 161 (355)
Q Consensus 92 ~~d~~s~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~ 161 (355)
..+++|+.+|+++.. +++++.+.++.| +.+.++.+++++|+..... ... .. + ...++++|++
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~-~~---g-~~~~~~~G~~ 201 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EEL-LE---G-GHGLMVRGYD 201 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccc-cC---C-CceeecCCHH
Confidence 367899999876431 345555556666 4567899999999875311 000 01 1 1245778888
Q ss_pred hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhcccccCcHHHHh
Q 018455 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLK 238 (355)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~l~~~~~~~~ 238 (355)
+ +++.|++ +.+|++|++|++|..++++ + .|++ +|+++.||+||+|+|+..+++ +.+.|.++. ...+.
T Consensus 202 ~-l~~~l~~-----~~~i~~~~~V~~i~~~~~~--v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~-~~~~a 271 (435)
T PLN02268 202 P-VINTLAK-----GLDIRLNHRVTKIVRRYNG--V-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPE-WKEEA 271 (435)
T ss_pred H-HHHHHhc-----cCceeCCCeeEEEEEcCCc--E-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCH-HHHHH
Confidence 7 5555542 5689999999999998753 5 4666 677899999999999999875 334455432 11235
Q ss_pred hccCCcccEEEEEEEEccCCCCCCCCcceeccCC--CccceeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHH
Q 018455 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQV 314 (355)
Q Consensus 239 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~ 314 (355)
++++++.++.++.+.|++++|. . .+ +++... ......++ ..... ++..++.+... .+.++..++++++
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~-~-~~-~~g~~~~~~~~~~~~~--~~~~~---~g~~~l~~~~~g~~a~~~~~~~~~e~ 343 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWP-N-VE-FLGVVAPTSYGCSYFL--NLHKA---TGHPVLVYMPAGRLARDIEKLSDEAA 343 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCC-C-Cc-eeeccCCCCCCceEEE--ecccC---CCCCEEEEEeccHHHHHHHhCCHHHH
Confidence 6778888999999999999883 2 12 222111 11111122 11110 12234432222 2345678899999
Q ss_pred HHHHHHHHhhhcccCCCceeeeeeEEecC
Q 018455 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFP 343 (355)
Q Consensus 315 ~~~~~~~l~~~~p~~~~~~~~~~~v~~~~ 343 (355)
++.++++|+++||... .++.+.+++|.
T Consensus 344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~ 370 (435)
T PLN02268 344 ANFAMSQLKKMLPDAT--EPVQYLVSRWG 370 (435)
T ss_pred HHHHHHHHHHHcCCCC--CccEEEecccC
Confidence 9999999999998642 34445555554
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=99.63 E-value=6.6e-14 Score=137.05 Aligned_cols=231 Identities=12% Similarity=0.116 Sum_probs=138.9
Q ss_pred hcccccHHHHHHHhC------CCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHH
Q 018455 92 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 165 (355)
Q Consensus 92 ~~d~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~ 165 (355)
..+++|+.+|+++.. .++.. +.+++..+..+....+.++|...+..+.... ....+.....+.||+++ ++
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~--~~e~~G~~~~i~GG~~~-Li 360 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDD--PYEMGGDHCFLAGGNWR-LI 360 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcc--ccccCCceEEECCcHHH-HH
Confidence 367899999998643 34433 2345544433333333333333222222210 01112234557899987 66
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH--HhhhcccccCcHHHHhhccCC
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLA 243 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~--~l~~~~~l~~~~~~~~~~~l~ 243 (355)
++|++ +.+|++|++|++|.+++++ | .|+++++++.||+||+|+|+.+++ .+.+.|+++. ...+.+++++
T Consensus 361 ~aLA~-----~L~IrLnt~V~~I~~~~dG--V-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~-~K~~AI~rL~ 431 (738)
T PLN02529 361 NALCE-----GVPIFYGKTVDTIKYGNDG--V-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPR-RKLAAIDRLG 431 (738)
T ss_pred HHHHh-----cCCEEcCCceeEEEEcCCe--E-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCH-HHHHHHHcCC
Confidence 66664 4469999999999998753 5 477777889999999999999998 4556666642 2234678999
Q ss_pred cccEEEEEEEEccCCCCCCCCcceecc----CCCc-cceeeEcccccccccCCCceEEEEEee---CCCCCCCCCHHHHH
Q 018455 244 SIDVVSVKLWFDKKVTVPNVSNACSGF----GDSL-AWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDDQVV 315 (355)
Q Consensus 244 ~~~~~~v~l~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~ee~~ 315 (355)
++++.++++.|++++|... .. .++. .... .+.++. +.... +++.++. .|. .+..+..+++++++
T Consensus 432 yG~v~KV~L~F~~~FW~~~-~~-~fG~l~~~~~~~g~~~~~~-~~~~~----~ggpvLv-afv~G~~A~~le~lsdeeii 503 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEE-LD-TFGCLNESSNKRGEFFLFY-GYHTV----SGGPALV-ALVAGEAAQRFENTDPSTLL 503 (738)
T ss_pred CceeEEEEEEeCCccccCC-CC-ceEEEeccCCCCceEEEEe-cCCCC----CCCCEEE-EEECchhhHHHhcCCHHHHH
Confidence 9999999999999998421 11 2221 0011 111121 11101 1233332 333 33456678999999
Q ss_pred HHHHHHHhhhccc--CCCceeeeeeEEecC
Q 018455 316 AKAVSYLSKCIKD--FSTATVMDHKIRRFP 343 (355)
Q Consensus 316 ~~~~~~l~~~~p~--~~~~~~~~~~v~~~~ 343 (355)
+.++++|+++|+. ...+.++.+.+++|.
T Consensus 504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~ 533 (738)
T PLN02529 504 HRVLSVLRGIYNPKGINVPDPIQTICTRWG 533 (738)
T ss_pred HHHHHHHHHHhCccccccCCceEEEEccCC
Confidence 9999999999962 222345555556665
No 19
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.62 E-value=7.1e-15 Score=132.48 Aligned_cols=178 Identities=14% Similarity=0.148 Sum_probs=122.4
Q ss_pred ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCC-eEEecCEEEEccChhhHHHhhhcccccCcH
Q 018455 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNRE 234 (355)
Q Consensus 156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g-~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~ 234 (355)
+.|||+. +++++++.+ |.+|+++++|++|.+.++| | .|+++. +++.+|.||||+|+.++.+|..+|.++ ..
T Consensus 204 ~~GGmd~-la~Afa~ql---~~~I~~~~~V~rI~q~~~g--V-~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~-~~ 275 (450)
T COG1231 204 RLGGMDQ-LAEAFAKQL---GTRILLNEPVRRIDQDGDG--V-TVTADDVGQYVADYVLVTIPLAILGQIDFAPLLP-AE 275 (450)
T ss_pred cCccHHH-HHHHHHHHh---hceEEecCceeeEEEcCCe--E-EEEeCCcceEEecEEEEecCHHHHhhcccCCCCC-HH
Confidence 4499988 777777555 7899999999999999875 6 577766 899999999999999999998887543 23
Q ss_pred HHHhhccCCcccEEEEEEEEccCCCCCCCCcceec---cCCCccceeeEcccccccccCCCceEEEEEe-e-CCCCCCCC
Q 018455 235 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSG---FGDSLAWTFFDLNKIYDEHKDDSATVIQADF-Y-HANELMPL 309 (355)
Q Consensus 235 ~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-~-~~~~~~~~ 309 (355)
+.+.++.++|.+..++.+.|+++||+. .+.+.| .+..+....++ ++. ..+..+.++.... . .+..|..+
T Consensus 276 ~~~a~~~~~y~~~~K~~v~f~rpFWee--~~~l~G~~~tD~~~~~i~~~-s~~---~~~G~gVl~g~~~~g~~A~~~~~~ 349 (450)
T COG1231 276 YKQAAKGVPYGSATKIGVAFSRPFWEE--AGILGGESLTDLGLGFISYP-SAP---FADGPGVLLGSYAFGDDALVIDAL 349 (450)
T ss_pred HHHHhcCcCcchheeeeeecCchhhhh--cccCCceEeecCCcceEecC-ccc---cCCCceEEEeeeeccccceeEecC
Confidence 334567788999999999999999952 221211 12222211122 121 1112333333212 1 45678899
Q ss_pred CHHHHHHHHHHHHhhhcccCCCcee---eeeeEEecCCCcc
Q 018455 310 KDDQVVAKAVSYLSKCIKDFSTATV---MDHKIRRFPKSLT 347 (355)
Q Consensus 310 ~~ee~~~~~~~~l~~~~p~~~~~~~---~~~~v~~~~~a~~ 347 (355)
+++++++.++..+.++||+.....+ ..+.|.+.|++..
T Consensus 350 ~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G 390 (450)
T COG1231 350 PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLG 390 (450)
T ss_pred CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCc
Confidence 9999999999999999995322222 4466777777654
No 20
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.59 E-value=8.3e-13 Score=130.04 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=116.0
Q ss_pred eEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH--hhhcccc
Q 018455 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL 230 (355)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~--l~~~~~l 230 (355)
....+||+++ ++++|++.+ .|++|++|++|...+++ | .|+++|+++.||+||+|+|+.++++ +.+.|++
T Consensus 429 ~~~v~GG~~~-Li~aLa~~L-----~I~ln~~V~~I~~~~dg--V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L 499 (808)
T PLN02328 429 HCFIPGGNDT-FVRELAKDL-----PIFYERTVESIRYGVDG--V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL 499 (808)
T ss_pred EEEECCcHHH-HHHHHHhhC-----CcccCCeeEEEEEcCCe--E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence 4557899998 777787655 49999999999998753 5 4556888999999999999999884 5556655
Q ss_pred cCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceecc---CCC-cc-ce-eeEcccccccccCCCceEEEEEee--C
Q 018455 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDS-LA-WT-FFDLNKIYDEHKDDSATVIQADFY--H 302 (355)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~-~~-~~-~~~~~~~~~~~~~~~g~~l~~~~~--~ 302 (355)
+. ...+.++++.++++.++.+.|++++|... .. .++. +.. .+ +. +++.+.. .++.++.+.+. .
T Consensus 500 P~-~K~~AI~~l~yG~~~KV~L~F~~~FW~~~-~d-~fG~l~~d~s~rG~~~lf~s~s~~------~G~~vLvafv~G~~ 570 (808)
T PLN02328 500 PQ-RKKDAIQRLGYGLLNKVALLFPYNFWGGE-ID-TFGHLTEDPSMRGEFFLFYSYSSV------SGGPLLIALVAGDA 570 (808)
T ss_pred CH-HHHHHHHcCCCcceEEEEEEeCCccccCC-CC-ceEEEeecCCCCceEEEEecCCCC------CCCcEEEEEecChh
Confidence 42 22236788999999999999999998421 11 1221 111 11 11 1221111 23344433222 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhccc--CCCceeeeeeEEecCCC
Q 018455 303 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKS 345 (355)
Q Consensus 303 ~~~~~~~~~ee~~~~~~~~l~~~~p~--~~~~~~~~~~v~~~~~a 345 (355)
+..+..++++++++.++++|+++|+. .....++.+.+++|...
T Consensus 571 A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~D 615 (808)
T PLN02328 571 AVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKD 615 (808)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCC
Confidence 34566789999999999999999963 11234566777777643
No 21
>PLN02676 polyamine oxidase
Probab=99.56 E-value=1.4e-13 Score=130.89 Aligned_cols=242 Identities=12% Similarity=0.064 Sum_probs=142.5
Q ss_pred hcccccH--HHHHHHhC-CCHHHHHHHHHHHHH-hhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEe--cCCcchHHH
Q 018455 92 KYDSITA--RELFKQFG-CSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC--RGTLREKIF 165 (355)
Q Consensus 92 ~~d~~s~--~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~--~gg~~~~l~ 165 (355)
..|++|+ .+++.+.. .+.. ......+.. ..++.+++++|+..++.. ..+ ...++ ..... +||+++ ++
T Consensus 155 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~g~-~~~~~~~~~G~~~-l~ 227 (487)
T PLN02676 155 KAVDISILTAQRLFGQVPKTPL--EMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDFGE-DEYFVADPRGYES-LV 227 (487)
T ss_pred CCCCccHHHHHHHHhhCCCCHH--HHHHHHHhccceeccCccccchhhcCcc-ccc--ccCCC-ceEEeecCCCHHH-HH
Confidence 3567777 55555432 1111 111222221 226888899998765421 111 11111 22233 689988 77
Q ss_pred HHHHHHHHHc------CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhcccccCcHHH
Q 018455 166 EPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEF 236 (355)
Q Consensus 166 ~~l~~~l~~~------G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~l~~~~~~ 236 (355)
+.|++.+.+. +.+|++|++|++|..++++ | .|++ +|++++||+||+|+|+.+++. +.+.|+++. ...
T Consensus 228 ~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g--V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~-~k~ 303 (487)
T PLN02676 228 YYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG--V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPD-WKI 303 (487)
T ss_pred HHHHhhcccccccccCCCceecCCEeeEEEEcCCc--E-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCH-HHH
Confidence 8888766432 2579999999999998764 6 4766 677999999999999999986 777777753 212
Q ss_pred HhhccCCcccEEEEEEEEccCCCCCCCCcceeccC-CCccc-eeeEcccccccccCCCceEEEEEee--CCCCCCCCCHH
Q 018455 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG-DSLAW-TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDD 312 (355)
Q Consensus 237 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~e 312 (355)
+.++++.++.+.++.+.|++++|........+... ...+. .++.. ..... ++..++.+.+. .+..+..++++
T Consensus 304 ~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~l~~~~~g~~a~~~~~~s~e 379 (487)
T PLN02676 304 EAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH--LENEY--PGSNVLFVTVTDEESRRIEQQPDS 379 (487)
T ss_pred HHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh--cccCC--CCCCEEEEEechHHHHHHHhCCHH
Confidence 35677888899999999999999421111111111 00000 00100 00011 22234333232 23456678999
Q ss_pred HHHHHHHHHHhhhccc-CC-CceeeeeeEEecCCCccc
Q 018455 313 QVVAKAVSYLSKCIKD-FS-TATVMDHKIRRFPKSLTH 348 (355)
Q Consensus 313 e~~~~~~~~l~~~~p~-~~-~~~~~~~~v~~~~~a~~~ 348 (355)
++++.+++.|+++|+. +. ......+.|...|++...
T Consensus 380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gs 417 (487)
T PLN02676 380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGS 417 (487)
T ss_pred HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcc
Confidence 9999999999999963 22 133445566666776543
No 22
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.55 E-value=1.1e-12 Score=126.35 Aligned_cols=230 Identities=10% Similarity=0.001 Sum_probs=140.3
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHH
Q 018455 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (355)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l 172 (355)
.+..|+.+|+++...++ .++.++.. ....++.+|++.++.+.+..+..+ . ....+++||++. ++++|.+.+
T Consensus 159 ~~~~s~~~~~~~~~~~~-~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~----~--~g~~~~~gG~~~-l~~al~~~~ 229 (502)
T TIGR02734 159 LAWRSLYSKVARFFSDE-RLRQAFSF-HALFLGGNPFRTPSIYALISALER----E--WGVWFPRGGTGA-LVAAMAKLA 229 (502)
T ss_pred cCcCCHHHHHHhhcCCH-HHHHHhcc-cceeeccCcccchHHHHHHHHHHh----h--ceEEEcCCCHHH-HHHHHHHHH
Confidence 45789999999874444 45666653 344667888888876554322211 1 134678999987 889999999
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhhhcccccCcHHHHhhccCC-cccEEE
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLA-SIDVVS 249 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~~~~~l~~~~~~~~~~~l~-~~~~~~ 249 (355)
+++|++|+++++|++|..++ +++++|.+ +|++++||.||+|+++..+ ..|++....+. ...+.+++++ +.+.++
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRR-YPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCcccccc-ccccccccCCcCCeeeE
Confidence 99999999999999999876 45778877 5678999999999998665 45665443221 1112344555 446788
Q ss_pred EEEEEc---cCCCCCCCCcceeccC-----------C--C-ccceeeEc-ccccccccCCCc-eEEEEE-eeCCC-----
Q 018455 250 VKLWFD---KKVTVPNVSNACSGFG-----------D--S-LAWTFFDL-NKIYDEHKDDSA-TVIQAD-FYHAN----- 304 (355)
Q Consensus 250 v~l~~~---~~~~~~~~~~~~~~~~-----------~--~-~~~~~~~~-~~~~~~~~~~~g-~~l~~~-~~~~~----- 304 (355)
++++++ +++.....++.++..+ + + ....+... +...|..+ |+| +.+.+. ..+..
T Consensus 307 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~a-P~G~~~~~~~~~~~~~~~~~~ 385 (502)
T TIGR02734 307 LYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLA-PPGCENLYVLAPVPHLGTADV 385 (502)
T ss_pred EEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCC-CCCCccEEEEEeCCCCCCCCC
Confidence 899998 3433111223232111 0 0 01111211 22223333 344 333222 22221
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-cccCCCceeeee
Q 018455 305 ELMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDH 337 (355)
Q Consensus 305 ~~~~~~~ee~~~~~~~~l~~~-~p~~~~~~~~~~ 337 (355)
+|. ...+++.+.+++.+++. +|++++ .++..
T Consensus 386 ~~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~ 417 (502)
T TIGR02734 386 DWS-VEGPRYRDRILAYLEERAIPGLRD-RIVVE 417 (502)
T ss_pred CcH-HHHHHHHHHHHHHHHHhcCCChhH-heEEE
Confidence 132 23567889999999998 998864 34433
No 23
>PLN02568 polyamine oxidase
Probab=99.55 E-value=3.2e-13 Score=129.42 Aligned_cols=218 Identities=14% Similarity=0.098 Sum_probs=142.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC-------------C-----CcceEEe
Q 018455 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-------------K-----NFDLVWC 156 (355)
Q Consensus 95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~-------------~-----~~~~~~~ 156 (355)
+.|+.+|++++ +++ .++.+.+|+..++++.++++.+...++..+..+..... . ......+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999986 544 56677788888899888888877666554443210000 0 0123446
Q ss_pred cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH------hhhccc
Q 018455 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE------LIKNSI 229 (355)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~------l~~~~~ 229 (355)
+||+++ |.+.|++.+. +.+|++|++|++|..++++ + .|++ +|+++.||+||+|+|+..+++ +.+.|+
T Consensus 238 ~gG~~~-Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 238 AKGYLS-VIEALASVLP--PGTIQLGRKVTRIEWQDEP--V-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred CCcHHH-HHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--E-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 799988 6788877663 4689999999999998753 5 4666 677899999999999999985 456666
Q ss_pred ccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcc-----------------cccccccCCC
Q 018455 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLN-----------------KIYDEHKDDS 292 (355)
Q Consensus 230 l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 292 (355)
++.. ..+.++.++++.+.++++.|++++|.. ... +... ..++. +++.+ ...+. . .+
T Consensus 312 LP~~-k~~Ai~~l~~g~~~Ki~l~f~~~fW~~-~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 384 (539)
T PLN02568 312 LPDF-KTDAISRLGFGVVNKLFVELSPRPDGS-PED-VAKF-PFLQM-AFHRSDSEARHDKIPWWMRRTASICPI-H-KN 384 (539)
T ss_pred CCHH-HHHHHHhcCCceeeEEEEEecCCCCCc-ccc-cccc-cceee-eecccchhhhcccccchhhcccccccc-C-CC
Confidence 6432 234678888889999999999998731 111 0000 00100 11100 00111 0 12
Q ss_pred ceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhcc
Q 018455 293 ATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIK 327 (355)
Q Consensus 293 g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p 327 (355)
..++...+. .+..+..++++++++.+++.|+++|+
T Consensus 385 ~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g 421 (539)
T PLN02568 385 SSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLK 421 (539)
T ss_pred CCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcC
Confidence 233333222 24456788999999999999999996
No 24
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.51 E-value=3.6e-13 Score=126.95 Aligned_cols=241 Identities=20% Similarity=0.144 Sum_probs=142.5
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHh----cCCCcceEEecCCcchHHHHH
Q 018455 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFEP 167 (355)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~----~~~~~~~~~~~gg~~~~l~~~ 167 (355)
..+..++.+|+....+.+.....++.++.....+..+...++......+...... ...........|++. ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~ 214 (450)
T PF01593_consen 139 EDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLS----LA 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTH----HH
T ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchh----HH
Confidence 3456677888876655555554355666666666667777776444333322110 011111223344433 34
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhcccccCcHHHHhhccCCccc
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID 246 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~~~l~~~~~~~~~~~l~~~~ 246 (355)
+...+...|++|++|++|++|+.+++ +|. |++ +|++++||+||+|+|+..+.++...+.++. .....++.+.+.+
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~--~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~-~~~~a~~~~~~~~ 290 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDG--GVT-VTTEDGETIEADAVISAVPPSVLKNILLLPPLPE-DKRRAIENLPYSS 290 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESS--EEE-EEETTSSEEEESEEEE-S-HHHHHTSEEESTSHH-HHHHHHHTEEEEE
T ss_pred HHHHHhhcCceeecCCcceecccccc--ccc-cccccceEEecceeeecCchhhhhhhhhcccccc-cccccccccccCc
Confidence 55555667889999999999999984 474 555 788999999999999999987443333321 1122456778888
Q ss_pred EEEEEEEEccCCCCCCC-CcceeccCC--CccceeeEcccccccccCCCceEEEEEee-C-CCCCCCCCHHHHHHHHHHH
Q 018455 247 VVSVKLWFDKKVTVPNV-SNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFY-H-ANELMPLKDDQVVAKAVSY 321 (355)
Q Consensus 247 ~~~v~l~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~-~~~~~~~~~ee~~~~~~~~ 321 (355)
+.++++.+++++|.... ...+...+. ...+ +.+.+...+. +++..+...+. . ...+..++++++++.++++
T Consensus 291 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 366 (450)
T PF01593_consen 291 VSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGY-VSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDD 366 (450)
T ss_dssp EEEEEEEESSGGGGSTTTESEEEEESSTSSEEE-EEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ceeEEEeeecccccccccccceecccCcccccc-ccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHH
Confidence 89999999999884321 111111122 1221 2222222111 23444333333 2 2457788999999999999
Q ss_pred HhhhcccCCCceeeeeeEEecCC
Q 018455 322 LSKCIKDFSTATVMDHKIRRFPK 344 (355)
Q Consensus 322 l~~~~p~~~~~~~~~~~v~~~~~ 344 (355)
|++++|.....++.+..+++|..
T Consensus 367 L~~~~~~~~~~~~~~~~~~~w~~ 389 (450)
T PF01593_consen 367 LRKILPGASIPDPIDITVTRWSR 389 (450)
T ss_dssp HHHHHTTGGGGEESEEEEEECTT
T ss_pred hhhcccccccccccccccccccc
Confidence 99999952224555666666665
No 25
>PLN03000 amine oxidase
Probab=99.50 E-value=3.4e-12 Score=125.80 Aligned_cols=173 Identities=12% Similarity=0.164 Sum_probs=115.2
Q ss_pred eEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH--Hhhhcccc
Q 018455 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSIL 230 (355)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~--~l~~~~~l 230 (355)
....+||+++ ++++|++.+ .|+++++|++|.+++++ | .|+++++++.||+||+|+|+.+++ .+.+.|++
T Consensus 373 ~~~v~GG~~~-LieaLa~~L-----~I~Ln~~Vt~I~~~~dg--V-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL 443 (881)
T PLN03000 373 HCFLPGGNGR-LVQALAENV-----PILYEKTVQTIRYGSNG--V-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL 443 (881)
T ss_pred eEEeCCCHHH-HHHHHHhhC-----CcccCCcEEEEEECCCe--E-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence 3457799998 778887655 49999999999998753 5 466776789999999999999998 67777766
Q ss_pred cCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceecc---CCC-cc-ceeeEcccccccccCCCceEEEEEee---C
Q 018455 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDS-LA-WTFFDLNKIYDEHKDDSATVIQADFY---H 302 (355)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~~~g~~l~~~~~---~ 302 (355)
+. ...+.+++++++.+.++.+.|++++|.. ... .++. +.. -+ +..+. + ..+. .++.++. .|. .
T Consensus 444 P~-~K~~AI~rL~~G~l~KViL~Fd~~FW~~-d~~-~FG~l~~~~~~rg~~~~f~-s-~sp~---~G~pVLv-afv~Gd~ 514 (881)
T PLN03000 444 PQ-RKLDCIKRLGFGLLNKVAMLFPYVFWST-DLD-TFGHLTEDPNYRGEFFLFY-S-YAPV---AGGPLLI-ALVAGEA 514 (881)
T ss_pred CH-HHHHHHHcCCCcceEEEEEEeCCccccC-CCC-ceeEEecCCCCCceeEEEe-C-CCCC---CCCcEEE-EEecCch
Confidence 42 2224678999999999999999999942 111 2221 111 00 11121 1 1111 1233433 333 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhccc--CCCceeeeeeEEecC
Q 018455 303 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFP 343 (355)
Q Consensus 303 ~~~~~~~~~ee~~~~~~~~l~~~~p~--~~~~~~~~~~v~~~~ 343 (355)
+..+..++++++++.++++|+++|+. ....+++.+.+++|.
T Consensus 515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~ 557 (881)
T PLN03000 515 AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWG 557 (881)
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCC
Confidence 44677899999999999999999962 221234455555554
No 26
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.50 E-value=2.3e-12 Score=120.32 Aligned_cols=196 Identities=13% Similarity=0.187 Sum_probs=129.5
Q ss_pred CchHHHHHHHhCCCCCCCccc---ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHHhccC
Q 018455 8 FRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (355)
Q Consensus 8 y~~~~~l~~elGl~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 84 (355)
.-.+..++.+.|+.....+.. ..++..+|+. .. .|.+....++.+.+++.+|.++.+++..+.+.+
T Consensus 83 ~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~------~~-----vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~ 151 (443)
T PTZ00363 83 SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKI------HK-----VPATDMEALSSPLMGFFEKNRCKNFLQYVSNYD 151 (443)
T ss_pred CChHHHHHhhcCccceeeeEEeceEEEEecCCeE------EE-----CCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhc
Confidence 355778888899886655542 2232234432 21 345555567788899999999888777665543
Q ss_pred CC-hhhhhh--cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH--HhcCCCcceEEecCC
Q 018455 85 NT-DVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGT 159 (355)
Q Consensus 85 ~~-~~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~--~~~~~~~~~~~~~gg 159 (355)
.. ...+.. ++++|+.+|++++++++..++ ++..++......+-.+.++...+..++.++ +..-+...+.|+.||
T Consensus 152 ~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 152 ENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYG 230 (443)
T ss_pred cCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCC
Confidence 21 112333 457999999999999998765 444444443222112223333333332221 121222345789999
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccC
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG 217 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p 217 (355)
+++ |++++++.++..|++++++++|++|..+++ +++++|++ +|++++|+.||+...
T Consensus 231 ~g~-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 231 LGG-LPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHH-HHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECcc
Confidence 998 899999999999999999999999998765 46778887 788999999999544
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.49 E-value=5.2e-12 Score=121.12 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=138.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHH
Q 018455 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT 174 (355)
Q Consensus 95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~ 174 (355)
..|+.++++++..++.+ +.++...+......++.+.++..++..+... ......+++||++. ++++|.+.+++
T Consensus 169 ~~s~~~~~~~~~~~~~l-~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~~~-l~~~L~~~~~~ 241 (493)
T TIGR02730 169 PQNAGDIARRYIRDPGL-LKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGVGQ-IAESLVKGLEK 241 (493)
T ss_pred hccHHHHHHHhcCCHHH-HHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChHHH-HHHHHHHHHHH
Confidence 47899999998666654 5566654433333345777776555433211 11245789999988 88999999999
Q ss_pred cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhhhcccccCcHHHHhhccCC-cccEEEEE
Q 018455 175 RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELIKNSILCNREEFLKVLNLA-SIDVVSVK 251 (355)
Q Consensus 175 ~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~~~~~l~~~~~~~~~~~l~-~~~~~~v~ 251 (355)
+|++|+++++|++|..++ +++.+|++ +|++++||.||+|++++.+ .+|++....+. .....+++++ ..+.++++
T Consensus 242 ~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~-~~~~~~~~~~~s~s~~~~~ 318 (493)
T TIGR02730 242 HGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPK-KEKNWQRNYVKSPSFLSLH 318 (493)
T ss_pred CCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccch-hhHHHHhhccCCCceEEEE
Confidence 999999999999999876 45778888 6778999999999887654 56876543321 1112334444 34578999
Q ss_pred EEEccCCC--CCCCCcceecc----CCCccceeeEc-ccccccccCCCceEEEEEeeC--CCCCCCC-------CHHHHH
Q 018455 252 LWFDKKVT--VPNVSNACSGF----GDSLAWTFFDL-NKIYDEHKDDSATVIQADFYH--ANELMPL-------KDDQVV 315 (355)
Q Consensus 252 l~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~--~~~~~~~-------~~ee~~ 315 (355)
++++++.. ....++.++.. ......++... +...|..+ |.|..+...+.+ ...|..+ .++++.
T Consensus 319 l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~a-P~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~ 397 (493)
T TIGR02730 319 LGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLA-PEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA 397 (493)
T ss_pred EEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCC-cCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence 99988532 11112222110 11111111121 22223333 444332223332 2233222 245688
Q ss_pred HHHHHHHhhhcccCCC
Q 018455 316 AKAVSYLSKCIKDFST 331 (355)
Q Consensus 316 ~~~~~~l~~~~p~~~~ 331 (355)
+.+++.+++++|++++
T Consensus 398 ~~il~~l~~~~p~l~~ 413 (493)
T TIGR02730 398 ERIIDRLEKIFPGLDS 413 (493)
T ss_pred HHHHHHHHHHCCChhh
Confidence 8999999999998864
No 28
>PLN02976 amine oxidase
Probab=99.43 E-value=5.2e-12 Score=128.36 Aligned_cols=206 Identities=15% Similarity=0.113 Sum_probs=126.7
Q ss_pred hCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecC--------CCC
Q 018455 124 LFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERC 195 (355)
Q Consensus 124 ~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~--------~~~ 195 (355)
++.+++++|+.+...- ..+ ..-.+ ....++||+++ |+++|++.+ .|++|++|++|.+.+ +++
T Consensus 903 ~aa~L~eVSl~~~~qd-~~y--~~fgG-~~~rIkGGYqq-LIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~d 972 (1713)
T PLN02976 903 CAALLKEVSLPYWNQD-DVY--GGFGG-AHCMIKGGYSN-VVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRK 972 (1713)
T ss_pred ccCCHHHhhhhhhhcc-ccc--ccCCC-ceEEeCCCHHH-HHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCC
Confidence 3678899998743210 000 11111 23457899998 667777544 599999999999842 112
Q ss_pred eEEEEEe-CCeEEecCEEEEccChhhHH--HhhhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCC
Q 018455 196 CISDVVC-GKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD 272 (355)
Q Consensus 196 ~v~~v~~-~g~~~~ad~VV~a~p~~~~~--~l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~ 272 (355)
.| .|++ +|+++.||+||+|+|+.+++ .+.+.|+|+... ...+..+.++.+.++++.|+++||.. ..+ .++...
T Consensus 973 GV-tVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~K-qaAIqrLgfG~lnKV~LeFdrpFW~~-d~d-~FG~s~ 1048 (1713)
T PLN02976 973 KV-KVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWK-YSSIQRLGFGVLNKVVLEFPEVFWDD-SVD-YFGATA 1048 (1713)
T ss_pred cE-EEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHH-HHHHHhhccccceEEEEEeCCccccC-CCC-cccccc
Confidence 25 4655 67899999999999999987 567777775321 23568888889999999999999942 122 233210
Q ss_pred ---C-cc--ceeeEcccccccccCCCceEEEEEee-CCCCCCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEec---
Q 018455 273 ---S-LA--WTFFDLNKIYDEHKDDSATVIQADFY-HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF--- 342 (355)
Q Consensus 273 ---~-~~--~~~~~~~~~~~~~~~~~g~~l~~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~--- 342 (355)
. .+ +.+++... + .+...++.+... .+..+..++++++++.+++.|+++||....+.++.+.+++|
T Consensus 1049 edtdlrG~~~~~wnlr~--p---sG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1049 EETDLRGQCFMFWNVKK--T---VGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred ccCCCCceEEEeccCCC--C---CCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 0 11 11121110 1 012233332222 33456678999999999999999998532234445544544
Q ss_pred CCCccc
Q 018455 343 PKSLTH 348 (355)
Q Consensus 343 ~~a~~~ 348 (355)
|++...
T Consensus 1124 PySrGS 1129 (1713)
T PLN02976 1124 PFSYGA 1129 (1713)
T ss_pred CCcCcc
Confidence 565443
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.28 E-value=8.4e-10 Score=99.10 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh-hHHHhhhccc
Q 018455 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS-TLQELIKNSI 229 (355)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~-~~~~l~~~~~ 229 (355)
...|+.|||++ ++.++++.++++|++|.+++.|.+|..++ |++.||.+ ||++++++.||+++.++ ++.+|++...
T Consensus 255 ~~~Yp~GG~Ga-vs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 255 GWGYPRGGMGA-VSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cccCCCCChhH-HHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 45789999999 99999999999999999999999999988 67889998 78999999999977666 5579999887
Q ss_pred ccC
Q 018455 230 LCN 232 (355)
Q Consensus 230 l~~ 232 (355)
+++
T Consensus 332 LPe 334 (561)
T KOG4254|consen 332 LPE 334 (561)
T ss_pred CCc
Confidence 754
No 30
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=5.4e-09 Score=98.97 Aligned_cols=178 Identities=19% Similarity=0.211 Sum_probs=117.9
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhccccc
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILC 231 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~--l~~~~~l~ 231 (355)
...+|+.. +...++. |.+|+++++|.+|.+.++ +.+ .++. ++..+.+|.||+++|..+++. +.+.|+++
T Consensus 213 ~~~~G~~~-v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 213 LMKGGYEP-VVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred HhhCCccH-HHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 34577765 3333432 899999999999999886 332 3443 455599999999999999987 77777764
Q ss_pred CcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccC---CCccc--eeeEcccccccccCCCceEEEEEee-CCCC
Q 018455 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---DSLAW--TFFDLNKIYDEHKDDSATVIQADFY-HANE 305 (355)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~-~~~~ 305 (355)
. .....+++++.+.+.++.+.|++.+|.+. .. .++.. ....+ .|++. .+... ...++..... .+..
T Consensus 285 ~-~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~-~d-~fg~~~~~~~~~~~~~f~~~---~~~~~--~~~l~~~~~~~~a~~ 356 (501)
T KOG0029|consen 285 R-WKQEAIDRLGFGLVNKVILEFPRVFWDQD-ID-FFGIVPETSVLRGLFTFYDC---KPVAG--HPVLMSVVVGEAAER 356 (501)
T ss_pred H-HHHHHHHhcCCCceeEEEEEeccccCCCC-cC-eEEEccccccccchhhhhhc---CccCC--CCeEEEEehhhhhHH
Confidence 2 22346789998899999999999999422 22 33321 11111 11222 22211 1233322222 3456
Q ss_pred CCCCCHHHHHHHHHHHHhhhcccCCCceeeeeeEEecCCCccc
Q 018455 306 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH 348 (355)
Q Consensus 306 ~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~v~~~~~a~~~ 348 (355)
+..+++++++..++..|+++|+.....++++..+++|-..-..
T Consensus 357 ~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~ 399 (501)
T KOG0029|consen 357 VETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLS 399 (501)
T ss_pred HhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccC
Confidence 7789999999999999999999444467788888888654433
No 31
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=2.9e-09 Score=101.68 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=87.0
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHH
Q 018455 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (355)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l 172 (355)
....++.++++.. +..+.++..+........ .+|.+.++.+.+ +.. .. ......+++|||+. ++++|++.+
T Consensus 164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~--~~~--~~--~~~G~~~p~GG~~a-l~~aL~~~~ 234 (487)
T COG1233 164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPALYLL--LSH--LG--LSGGVFYPRGGMGA-LVDALAELA 234 (487)
T ss_pred HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHHHHH--HHH--hc--ccCCeeeeeCCHHH-HHHHHHHHH
Confidence 3456888888887 655555666655433223 667777622222 221 11 22346889999999 889999999
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhc
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 227 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~~ 227 (355)
+++|++|+++++|++|..++ |+.+++++ +|+.+++|.||++..+.....+...
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~ 288 (487)
T COG1233 235 REHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGE 288 (487)
T ss_pred HHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhh
Confidence 99999999999999999988 44445665 4568999999999988555555443
No 32
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.08 E-value=8.4e-09 Score=95.49 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=129.4
Q ss_pred cccCCchHHHHHHHhCCCCCCCccc---ceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHH
Q 018455 4 FWYPFRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV 80 (355)
Q Consensus 4 ~~~~y~~~~~l~~elGl~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (355)
++.+...+.++|-+-|+..+..+.. ..+| .+|+ +.. .|.+-...++.+.+++.+|.++.+++...
T Consensus 80 ll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~-~~~~------l~k-----VP~sr~dvf~s~~lsl~eKR~lmkFl~~v 147 (438)
T PF00996_consen 80 LLYARGPLVKLLISSGVTRYLEFKAVDGSYVY-KNGK------LHK-----VPCSREDVFKSKLLSLFEKRRLMKFLKFV 147 (438)
T ss_dssp BEETTSHHHHHHHHCTGGGGSEEEEESEEEEE-ETTE------EEE-------SSHHHHHC-TTS-HHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHhCCcccceEEEEcceeEEE-eCCE------Eee-----CCCCHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 3445567888888999986666552 3334 3454 322 34444446788899999999988887776
Q ss_pred hccCCC-hhhhhh--cccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCCh-hhccHHHHHHHHHHHH--HhcCCCcceE
Q 018455 81 IDFDNT-DVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPA-EQCSAAATLGILYFII--LAHQKNFDLV 154 (355)
Q Consensus 81 ~~~~~~-~~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~~~~~~~~--~~~~~~~~~~ 154 (355)
..++.. +..++. ..+.|+.++++..+.++..++ ++...+. ++..+. .+-++...+..++.++ ++.-+.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~-~i~haia-L~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfL 225 (438)
T PF00996_consen 148 ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLID-FIGHAIA-LSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFL 225 (438)
T ss_dssp HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHH-HHHHHTS--SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEE
T ss_pred hhcccCCcchhhccccccccHHHHHHhcCCCHHHHH-HHHHhhh-hccCcccccccHHHHHHHHHHHHHHHhccCCCCEE
Confidence 655422 222233 347899999999999988765 4433222 222222 1235666777777663 2222345788
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEE
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVL 214 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~ 214 (355)
||..|.++ |+|++.+..+=.|+...||++|.+|..+++ |++.+|..+|++++|+.||+
T Consensus 226 yP~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~ 283 (438)
T PF00996_consen 226 YPLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIG 283 (438)
T ss_dssp EETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEE
T ss_pred EEccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEE
Confidence 99999999 999999998888999999999999999766 67878888999999999996
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.04 E-value=9.7e-09 Score=97.46 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=89.3
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH---hcCCCcceEEecCCcchHHHHH
Q 018455 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFEP 167 (355)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~~~~~~~~~gg~~~~l~~~ 167 (355)
+++|+.|+.||++++++.. ....+|..+ ++- ....||..+..+++.++- .-...+.+...+....+.++.+
T Consensus 158 ~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t~----FaF-~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~P 231 (576)
T PRK13977 158 EKLDDKTIEDWFSPEFFET-NFWYYWRTM----FAF-EKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLP 231 (576)
T ss_pred HHhCCcCHHHHHhhcCchh-HHHHHHHHH----HCC-chhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHH
Confidence 4699999999999986644 445566665 433 488999999999987731 1112334445555565669999
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEe--CC--e---EEecCEEEEccChh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVC--GK--E---TYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~--~g--~---~~~ad~VV~a~p~~ 219 (355)
|.+.|+++|++|+++++|++|..+.++ ++|++|.+ +| + ....|.||+|+..-
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 999999999999999999999986222 56878866 33 2 34689999998743
No 34
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.94 E-value=8.3e-09 Score=93.74 Aligned_cols=215 Identities=16% Similarity=0.159 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHHHHH----cC--cEEEcCceee
Q 018455 113 RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT----RG--CEFLDGRRVT 186 (355)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~----~G--~~i~l~~~V~ 186 (355)
+.++.-.+......+.+++|...+..+-.. .+.....|.+-|... +.+.|++.+.+ .| .+|+++++|.
T Consensus 180 ~~~~k~e~~~~~~d~l~evs~~~~~ey~~~-----~ge~~~~~~~kGy~~-iL~~l~~~~p~~~i~~~~~~~~~~~~rv~ 253 (498)
T KOG0685|consen 180 NVYFKVECSITGADNLSEVSLRALLEYTEC-----PGEELLIWNKKGYKR-ILKLLMAVIPAQNIELGLWKRIHLNTRVE 253 (498)
T ss_pred HHHHHHheeeeccCchhhhhhhhccceeec-----CchhhheechhHHHH-HHHHHhccCCCcchhcCchhhhcccccce
Confidence 333333333334445666666555432111 111234555566666 44555554422 22 4677779999
Q ss_pred EEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHh---hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCC
Q 018455 187 DFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL---IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN 262 (355)
Q Consensus 187 ~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l---~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~ 262 (355)
+|..+++ ++| .|++ ||+.+.||+|||+++..++++- ++.|+|+... ...+++++.+.+.++++-|.+|+|. .
T Consensus 254 ~I~~~~~-~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K-~~AIe~lgfGtv~KiFLE~E~pfwp-~ 329 (498)
T KOG0685|consen 254 NINWKNT-GEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEK-QRAIERLGFGTVNKIFLEFEEPFWP-S 329 (498)
T ss_pred eeccCCC-CcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHH-HHHHHhccCCccceEEEEccCCCCC-C
Confidence 9999876 456 5777 8999999999999999988762 3455554221 1267889988999999999999983 2
Q ss_pred CCcce--eccCCC--------ccc----eeeEcccccccccCCCceEEEEEee--CCCCCCCCCHHHHHHHHHHHHhhhc
Q 018455 263 VSNAC--SGFGDS--------LAW----TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCI 326 (355)
Q Consensus 263 ~~~~~--~~~~~~--------~~~----~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~ 326 (355)
.++.+ +-.+.. ..| +.|..... ...++...+. .+.....+++||+.+.+...|++++
T Consensus 330 ~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~-------~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl 402 (498)
T KOG0685|consen 330 DWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW-------APNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFL 402 (498)
T ss_pred CCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc-------chhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhc
Confidence 22211 111111 001 11111110 1123333232 2334458899999999999999998
Q ss_pred ccCCCce---eeeeeEEecCC
Q 018455 327 KDFSTAT---VMDHKIRRFPK 344 (355)
Q Consensus 327 p~~~~~~---~~~~~v~~~~~ 344 (355)
++..-+. ++.+.|...|.
T Consensus 403 ~n~~iP~p~kilRs~W~snp~ 423 (498)
T KOG0685|consen 403 KNPEIPKPKKILRSQWISNPF 423 (498)
T ss_pred CCCCCCCchhhhhhcccCCCc
Confidence 6533233 34444444443
No 35
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.86 E-value=2.1e-09 Score=90.57 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=108.3
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEe-CC-eEEecCEEEEccChhhHHHhhhcc--cccCcHHHHhhccCCcccEEEEE
Q 018455 176 GCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQELIKNS--ILCNREEFLKVLNLASIDVVSVK 251 (355)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VV~a~p~~~~~~l~~~~--~l~~~~~~~~~~~l~~~~~~~v~ 251 (355)
..+|+++++|++|...++ .|.+.+ +| +...+|.||+|+|++++..|+... .++ ......+....|.|+.++.
T Consensus 117 dL~V~~~~rVt~v~~~~~---~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p-~~l~~~~a~V~y~Pc~s~~ 192 (331)
T COG3380 117 DLTVVLETRVTEVARTDN---DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLP-AALRAALADVVYAPCWSAV 192 (331)
T ss_pred cchhhhhhhhhhheecCC---eeEEEecCCCcccccceEEEecCCCcchhhcCcccccch-HHHHHhhccceehhHHHHH
Confidence 458999999999999853 578888 43 578899999999999999988542 221 1223356777788999999
Q ss_pred EEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeC--CCCCCCCCHHHHHHHHHHHHhhhcccC
Q 018455 252 LWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDF 329 (355)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~~~~ee~~~~~~~~l~~~~p~~ 329 (355)
++|..+...+.+. ++-.+.++.|.-.+ +..+... +.+.++.+...+ +..+.+.++|+.+..+......+++..
T Consensus 193 lg~~q~l~~P~~G--~~vdg~~laWla~d--~sK~g~~-p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~ 267 (331)
T COG3380 193 LGYPQPLDRPWPG--NFVDGHPLAWLARD--ASKKGHV-PDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDR 267 (331)
T ss_pred hcCCccCCCCCCC--cccCCCeeeeeecc--ccCCCCC-CcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCC
Confidence 9999887643322 33345677774333 2223332 344433232221 234456677777766666666666532
Q ss_pred CCceeeeeeEEecCCCccccC
Q 018455 330 STATVMDHKIRRFPKSLTHFF 350 (355)
Q Consensus 330 ~~~~~~~~~v~~~~~a~~~~~ 350 (355)
- +++.....++|+||+|.-.
T Consensus 268 ~-~~p~~s~~H~WrYA~P~~~ 287 (331)
T COG3380 268 L-PEPDWSDAHRWRYAIPNDA 287 (331)
T ss_pred C-CcchHHHhhcccccccccc
Confidence 2 4567788899999998754
No 36
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.7e-07 Score=82.12 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=134.2
Q ss_pred cccCCchHHHHHHHhCCCCCCCcc---cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHH
Q 018455 4 FWYPFRNIFSLVDELGIKPFTGWM---KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV 80 (355)
Q Consensus 4 ~~~~y~~~~~l~~elGl~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (355)
|+-+...+..+|-+-|+..++.+. +..+| .+|+.++ .|.+....+..+.+++.+|-+..+++.-.
T Consensus 80 ~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~-~~~k~~K-----------VP~t~~Ea~~s~lmgl~eKrr~~kFl~~V 147 (440)
T KOG1439|consen 80 FLMANGELVKILIHTGVTRYLEFKSISGSFVY-KKGKIYK-----------VPATEAEALTSPLMGLFEKRRVMKFLKFV 147 (440)
T ss_pred hhhccchHHHHHHHhchhhheEEEeecceEEE-ECCeEEE-----------CCCCHHHHhcCCccchhHHHHHHHHHHHH
Confidence 344566688888899998665554 23333 4565432 34444446788899999999988877766
Q ss_pred hccC-CChhhhhhcc--cccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHH--HhcCCCcceEE
Q 018455 81 IDFD-NTDVAWRKYD--SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVW 155 (355)
Q Consensus 81 ~~~~-~~~~~~~~~d--~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~--~~~~~~~~~~~ 155 (355)
..++ ..+..|+.+| ..|+.+++.+.+..+..++ |....+......+--+..+..++..+..|+ +..-+.+...|
T Consensus 148 ~n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~yly 226 (440)
T KOG1439|consen 148 LNYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLY 226 (440)
T ss_pred hhhhhhccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCccee
Confidence 6543 1233444554 3499999999988888765 443344444444444555655555555442 12223334578
Q ss_pred ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 018455 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (355)
Q Consensus 156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a 215 (355)
|..|+++ +++..++.-+=-|++..||.++.+|..+++ |++.+|..++++..++.||+-
T Consensus 227 P~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 227 PLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVICD 284 (440)
T ss_pred cccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEec
Confidence 9999999 899999887778999999999999999655 567778888888889988873
No 37
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.13 E-value=9.3e-06 Score=74.13 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=82.1
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCCCcceEEecCCcchHHHHHHHHH
Q 018455 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 171 (355)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~ 171 (355)
.+-+.|..+||+++|+++.+++.++.+.++..|+.+ .++++...+.-+. . ...++.-.+||-.+ +++.|.
T Consensus 66 ~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla-----~-a~~gl~sV~GGN~q-I~~~ll-- 135 (368)
T PF07156_consen 66 NLTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLA-----G-ATGGLWSVEGGNWQ-IFEGLL-- 135 (368)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeee-----e-ccCCceEecCCHHH-HHHHHH--
Confidence 345679999999999999999999999999999987 4576655543222 1 11234557788665 666555
Q ss_pred HHHcCcEEEcCceeeEE-EecCCCCeEEEEEe---CC-eEEecCEEEEccChhhH
Q 018455 172 MRTRGCEFLDGRRVTDF-IYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTL 221 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I-~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~~ 221 (355)
++.|.+| ++++|++| ...+++...+.|+. .+ ..-.+|.||+|+|.+..
T Consensus 136 -~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 136 -EASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred -HHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 5568899 99999999 44444222334543 12 23457999999999643
No 38
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00018 Score=63.92 Aligned_cols=192 Identities=15% Similarity=0.186 Sum_probs=118.0
Q ss_pred cccCCchHHHHHHHhCCCCCCCcc---cceeecCCCceecccccccCCCCCCCccccccccCCCCCHHhhhchhhHHHHH
Q 018455 4 FWYPFRNIFSLVDELGIKPFTGWM---KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAV 80 (355)
Q Consensus 4 ~~~~y~~~~~l~~elGl~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~p~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (355)
++-+..++..++.+.|+..++.+. +...| .+|+.++ .|-+-...+..+.+++.+|-+..+++.-.
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~-~~~k~~k-----------VP~ne~ei~~s~~lsL~eKr~vmrFl~~V 148 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLY-RPGKIYK-----------VPYNEAEIFTSPLLSLFEKRRVMRFLKWV 148 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEe-cCCcEEE-----------CCccHHhhhcCCCcchhhHHHHHHHHHHH
Confidence 345667788999999998665444 23333 4555322 34444556788899999999987766443
Q ss_pred hccCCChhhhhhcc-cccHHHHHHH-hCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHH--hcCCCcceEEe
Q 018455 81 IDFDNTDVAWRKYD-SITARELFKQ-FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWC 156 (355)
Q Consensus 81 ~~~~~~~~~~~~~d-~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~--~~~~~~~~~~~ 156 (355)
.........++++. +.+..+++.+ .+.+.+..+.+...++.. + + -+..+..++..+..++. ..-+.+...||
T Consensus 149 ~n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~-l--d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp 224 (434)
T COG5044 149 SNYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-L--D-LDIPAREALERILRYMRSFGDYGKSPYLYP 224 (434)
T ss_pred HhHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh-c--c-ccCCchHHHHHHHHHHHhhcccCCCcceee
Confidence 32211122233333 2456666665 344444333222333322 1 2 44555655555554431 12233456789
Q ss_pred cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 018455 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (355)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a 215 (355)
+-|+++ +++..++...-.|++..+|+++.+|...++ |.+|..++.+..|..||..
T Consensus 225 ~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk~---v~~v~~~~~~~ka~KiI~~ 279 (434)
T COG5044 225 RYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETKD---VETVDKGSLTQKAGKIISS 279 (434)
T ss_pred ccCchh-hhHHHHHhhhccCceeecCcchhhhccccc---eeeeecCcceeecCcccCC
Confidence 988999 899999887778999999999999997763 4345556778888888764
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.49 E-value=0.00041 Score=63.47 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=61.6
Q ss_pred ChhhccHHHHHHHHHHHHHhcCCCcceEEecCC---cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC
Q 018455 127 PAEQCSAAATLGILYFIILAHQKNFDLVWCRGT---LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG 203 (355)
Q Consensus 127 ~~~~~Sa~~~~~~~~~~~~~~~~~~~~~~~~gg---~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~ 203 (355)
+.+.++...+...+... .......+..+.+| ... +.+.|.+.+++.|++|+.+++|++|..++ +++.+|.++
T Consensus 112 ~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~g~i~~~~-l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~ 186 (358)
T PF01266_consen 112 PYELLSPEELRELFPFL--NPRIEGGVFFPEGGVIDPRR-LIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTS 186 (358)
T ss_dssp TEEEEEHHHHHHHSTTS--STTTEEEEEETTEEEEEHHH-HHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEET
T ss_pred cccccchhhhhhhhccc--ccchhhhhcccccccccccc-hhhhhHHHHHHhhhhccccccccchhhcc--ccccccccc
Confidence 55556665554433211 11111123345555 344 77889999999999999999999999988 457779886
Q ss_pred CeEEecCEEEEccChhhHHHhhhc
Q 018455 204 KETYSAGAVVLAVGISTLQELIKN 227 (355)
Q Consensus 204 g~~~~ad~VV~a~p~~~~~~l~~~ 227 (355)
++.++||.||+|+.++... |+..
T Consensus 187 ~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 187 DGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp TEEEEECEEEE--GGGHHH-HHHT
T ss_pred ccccccceeEeccccccee-eeec
Confidence 6569999999999987643 4433
No 40
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.37 E-value=0.0047 Score=57.78 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=86.6
Q ss_pred CCCHHhhhchhhHHHHHhccCCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHH
Q 018455 64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI 143 (355)
Q Consensus 64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~ 143 (355)
.|+..+++.+.+++.. .+ +.+++.++.||+....+.- +||. +.+..|+-.|. -||..+..+++.+
T Consensus 121 ~Ls~k~r~eL~kL~l~------~E---~~L~~~~I~d~F~~~FF~S----nFW~-~W~T~FAFqpW-hSa~E~rRyl~Rf 185 (500)
T PF06100_consen 121 GLSEKDRMELIKLLLT------PE---EDLGDKRIEDWFSESFFES----NFWY-MWSTMFAFQPW-HSAVEFRRYLHRF 185 (500)
T ss_pred CCCHHHHHHHHHHhcC------CH---HHhCcccHHHhcchhhhcC----chhH-hHHHhhccCcc-hhHHHHHHHHHHH
Confidence 3566666666554332 12 2588999999988764433 3443 23335555543 5888888888887
Q ss_pred HHhcCCC----cceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCC--eEEEEEe--CCe--EE---ecC
Q 018455 144 ILAHQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAG 210 (355)
Q Consensus 144 ~~~~~~~----~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~--~v~~v~~--~g~--~~---~ad 210 (355)
+ ..-.+ +.+...+-...+.++.+|.+.|+++|+++++|++|+.|..+.+++ .+..+.+ +|+ ++ +-|
T Consensus 186 ~-h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~D 264 (500)
T PF06100_consen 186 I-HEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDD 264 (500)
T ss_pred H-HhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCC
Confidence 4 22111 122233444445588999999999999999999999999874422 2334443 442 33 357
Q ss_pred EEEEccC
Q 018455 211 AVVLAVG 217 (355)
Q Consensus 211 ~VV~a~p 217 (355)
.|+++..
T Consensus 265 lV~vT~G 271 (500)
T PF06100_consen 265 LVFVTNG 271 (500)
T ss_pred EEEEECC
Confidence 8888765
No 41
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.21 E-value=0.0012 Score=61.58 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=44.9
Q ss_pred EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
.||.-.-...+.+.|.+.+++.|++|+++++|.+|+.+++ .+..|.+ +++++.||.||+|+...
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEETTTEEEEESEEEE----S
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeeccCcccccCCEEEEecCCC
Confidence 4565433333889999999999999999999999999874 3668988 88999999999998753
No 42
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.18 E-value=0.0014 Score=59.71 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~ 222 (355)
+...+.+.++++|++|+.+++|++|..++ +++++|.+++++++||.||+|+.++.-.
T Consensus 139 l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 139 LLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE 195 (337)
T ss_pred HHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh
Confidence 66788888889999999999999999876 4577787766689999999999998754
No 43
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0097 Score=53.88 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=99.4
Q ss_pred cccCCCCCHHhhhchhhHHHHHhcc--CCChhhhhhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHH
Q 018455 59 YTQFSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 136 (355)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 136 (355)
.+..+.|++.+|.-+.+++..-... +..+....+..+.++.+||+..+.++.+.. ++- .++--.+.++.++...
T Consensus 184 vFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lqs-~vl---~aIaM~~~~~~tt~eG 259 (547)
T KOG4405|consen 184 VFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQS-IVL---HAIAMLSESQLTTIEG 259 (547)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhHH-HHH---HHHHhcCcccccHHHH
Confidence 5677889999988876655543333 222334455678899999999999998654 432 2222335566777777
Q ss_pred HHHHHHHH--HhcCCCcceEEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEE-EEEeCCeEEecCEEE
Q 018455 137 LGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVV 213 (355)
Q Consensus 137 ~~~~~~~~--~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~-~v~~~g~~~~ad~VV 213 (355)
+...+.++ +++-+...+.+|--|.++ +++.+.+..+=.|+---|+.+|+.|..+.....+. .+...|..+.++.+|
T Consensus 260 m~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v 338 (547)
T KOG4405|consen 260 MDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFV 338 (547)
T ss_pred HHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeee
Confidence 76666653 233334557788889999 89999998887898888999999999876432211 111135555555444
Q ss_pred E
Q 018455 214 L 214 (355)
Q Consensus 214 ~ 214 (355)
+
T Consensus 339 ~ 339 (547)
T KOG4405|consen 339 V 339 (547)
T ss_pred e
Confidence 4
No 44
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.09 E-value=0.0012 Score=59.82 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=50.6
Q ss_pred EEec-CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 154 VWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 154 ~~~~-gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
.+|+ ...++ |.+.|.+.+++.|++|+++++|.+|+.++++ ..+.+ +|++++||.+|+|+...
T Consensus 103 ~Fp~sdkA~~-Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~---f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 103 MFPDSDKASP-IVDALLKELEALGVTIRTRSRVSSVEKDDSG---FRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred ecCCccchHH-HHHHHHHHHHHcCcEEEecceEEeEEecCce---EEEEcCCCCEEEccEEEEecCCc
Confidence 4566 44555 8899999999999999999999999998742 35777 45689999999999843
No 45
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.99 E-value=0.067 Score=51.91 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~~ 221 (355)
+...+++.+.++|++|+.+++|++|+.++ +++++|++ +| .++.|+.||.|+.++.-
T Consensus 130 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 130 LVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 55677778888999999999999999876 45666664 24 37899999999999863
No 46
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.97 E-value=0.076 Score=52.72 Aligned_cols=56 Identities=21% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecC-CCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~-~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...+++.+++.|++|+.+++|.+|..++ + +++++|++ +|+ ++.||.||+|+.++.
T Consensus 234 l~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 234 LNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 66778888888999999999999998864 2 44666654 343 689999999999985
No 47
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.95 E-value=0.0031 Score=59.32 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
+.+.+.+.+++.|++|+++++|++|+.++ +++++|++++.+++||.||+|+.++..
T Consensus 203 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 203 FTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH
Confidence 66778888888999999999999999876 346667777778999999999999763
No 48
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.92 E-value=0.0036 Score=58.20 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeE-EecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~-~~ad~VV~a~p~~~ 220 (355)
+...+++.++++|++|++|++|+.|+.++|| ++.+.+ +|++ ++|+.||.+.+...
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg--~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSDG--VFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCCc--eEEEEecCCcEEEEeeEEEECCchhH
Confidence 5677888999999999999999999999874 444555 5655 99999999998765
No 49
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.83 E-value=0.0054 Score=56.98 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=53.3
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhhHHHhhhc
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQELIKN 227 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~~~~l~~~ 227 (355)
.+..+.++|.+.++++|+++..+++|.++..++ +++++|.+ ++ .+++||+||+|+.++....|+.+
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 445577889999999999999999999999887 45777775 43 48999999999999965666443
No 50
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.70 E-value=0.0056 Score=56.32 Aligned_cols=55 Identities=24% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.|++.|++|+++|.|..|+.+++ .+.+|.+ +|+++.+|+||+|+.-..
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccCCcEEecCEEEEccCcch
Confidence 557788899999999999999999999884 3666766 688999999999997643
No 51
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.61 E-value=0.3 Score=47.71 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~ 220 (355)
+..+++..+.++|++|+.+++|++|..++ +++++|.+ +| .+++||.||.|+.++.
T Consensus 151 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 151 LTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 55566777788999999999999999876 45777764 23 4789999999999986
No 52
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.55 E-value=0.13 Score=49.34 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=60.4
Q ss_pred eEEecCCcc-hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhHH--H
Q 018455 153 LVWCRGTLR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQ--E 223 (355)
Q Consensus 153 ~~~~~gg~~-~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~~--~ 223 (355)
+.|+.+-.. .++.-..+..+.++|.+|+..++|+++..++ + |++|.+ +|+ +++|+.||-|+.||.-. +
T Consensus 154 ~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~ 230 (532)
T COG0578 154 FRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE 230 (532)
T ss_pred EEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence 445544321 2244455666778999999999999999987 5 889986 243 57899999999999744 2
Q ss_pred hhhcccccCcHHHHhhccCCcccEEEEEEEEcc
Q 018455 224 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDK 256 (355)
Q Consensus 224 l~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~ 256 (355)
...... .. . ....+...+|+.+++
T Consensus 231 ~~~~~~---~~---~---~~vr~skGsHlVv~~ 254 (532)
T COG0578 231 MAGLEQ---SP---H---IGVRPSKGSHLVVDK 254 (532)
T ss_pred hhcccC---CC---C---ccceeccceEEEecc
Confidence 221111 00 0 112255677888888
No 53
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.52 E-value=0.0098 Score=57.03 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH----cC--cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~----~G--~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
+...+.+.+++ .| ++|+++++|++|+.+++ .++.|.++.++++||.||+|+.++..
T Consensus 213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--~~~~V~T~~G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSND--SLYKIHTNRGEIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--CeEEEEECCCEEEeCEEEECcChhHH
Confidence 66788888888 77 68999999999998753 25678776668999999999998864
No 54
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.51 E-value=0.013 Score=55.52 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=49.0
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChh
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~ 219 (355)
++.++... +.+.|.+.+++.|++|+++++|++|..+++++++.+|.. ++.++.|+.||+|+...
T Consensus 117 ~~~~~g~~-l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKA-LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHH-HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 34444444 778899999999999999999999998631156777765 34588999999999854
No 55
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.35 E-value=0.011 Score=49.47 Aligned_cols=53 Identities=25% Similarity=0.193 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VV~a~p~~ 219 (355)
+.+-+.+.+++.+.+|+++++|++|..++++ +.|++. +++++||+||+|+...
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~---w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGDG---WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETTT---EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEeccE---EEEEEEecceeeeeeEEEeeecc
Confidence 5556666677788899999999999999863 678874 5699999999999853
No 56
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.30 E-value=0.0036 Score=57.68 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=76.4
Q ss_pred cHHHHH---HHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcC---CCcceEEecCCcchHHHHHHHH
Q 018455 97 TARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ---KNFDLVWCRGTLREKIFEPWMD 170 (355)
Q Consensus 97 s~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~---~~~~~~~~~gg~~~~l~~~l~~ 170 (355)
++.+|. .+. +++.+.+.|+.|...-.|+.+|+++++.++. .+..-+.... ...-.++|++|... +.+.|
T Consensus 130 ~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~Gyt~-~~~~m-- 204 (377)
T TIGR00031 130 ELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGGYTK-LFEKM-- 204 (377)
T ss_pred CHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCcccccccccccccHHH-HHHHH--
Confidence 455555 766 8999999999999999999999999998775 2221110000 01124679999555 44433
Q ss_pred HHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 018455 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (355)
Q Consensus 171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~ 223 (355)
+...+.+|+||+.+..+...+ + .+..+++.+. +.||.+.|.+.+-.
T Consensus 205 -l~~~~i~v~l~~~~~~~~~~~--~---~~~~~~~~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 205 -LDHPLIDVKLNCHINLLKDKD--S---QLHFANKAIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred -HhcCCCEEEeCCccceeeccc--c---ceeecccccc-CcEEEecCchHHHh
Confidence 344578999999888887543 2 2433333333 88999988876543
No 57
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.23 E-value=0.016 Score=53.33 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=47.6
Q ss_pred EEecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhh
Q 018455 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~ 220 (355)
.||.-.-.+-+.+.|.+.+++.|++|+++++|++| +++ + ..|.+ ++++++||.||+|+....
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-~--~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-T--LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-c--EEEEECCCceEEecCEEEEcCCCcc
Confidence 55654444448899999999999999999999999 332 2 45665 335799999999998754
No 58
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.16 E-value=0.016 Score=55.38 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
++..|++.+++.|++|+.+++|++|+. + + .+.|.+++++++||+||+|+.++..
T Consensus 185 l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~-~~~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 185 LVRGLRRVALELGVEIHENTPMTGLEE-G--Q-PAVVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEee-C--C-ceEEEeCCcEEECCEEEEccccccc
Confidence 667888888899999999999999975 3 2 2357776668999999999988753
No 59
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.12 E-value=0.011 Score=54.98 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=47.8
Q ss_pred EEecCCc--chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 154 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 154 ~~~~gg~--~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
.++.+|. ...+...|.+.+++ |++|+.+++|++|+.+++ ++ .|++ +|+++.||.||+|+.++..
T Consensus 125 ~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~--~~-~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 125 FFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE--GW-QLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred EeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC--eE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence 3445553 12266778888878 999999999999998763 34 5766 4566899999999998863
No 60
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.08 E-value=0.025 Score=53.04 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
+...+.+.+.+.|+++..+++|++|+.+++ +++++|.+++.++.|+.||+++.++..
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhH
Confidence 455677778889999999999999986543 346678776558999999999888753
No 61
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.94 E-value=0.029 Score=52.40 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|+++++|.+|..+++ .+ .|.++++++.||.||+|+.++.
T Consensus 151 l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 151 VAEAMAELIQARGGEIRLGAEVTALDEHAN--GV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eE-EEEECCCEEEeCEEEECCCcch
Confidence 677888888889999999999999988763 34 5777655899999999999875
No 62
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.94 E-value=0.028 Score=52.06 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+++.|++++.+++|++|+.+++ .+ .|.++++++.||.||+|+.++.
T Consensus 147 ~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~--~~-~v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 147 ALRALQELAEAHGATVRDGTKVVEIEPTEL--LV-TVKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEEecCC--eE-EEEeCCCEEEeCEEEEecCcch
Confidence 557777778889999999999999998763 35 4767656899999999999864
No 63
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.89 E-value=0.036 Score=53.07 Aligned_cols=54 Identities=28% Similarity=0.238 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~---g--~~~~ad~VV~a~p~~ 219 (355)
+...|.+.+++.|++|+++++|++|..++ ++|++|.+. + .++.|+.||+|+...
T Consensus 133 l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 133 LVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 67888888889999999999999999865 568787652 2 468999999999864
No 64
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.84 E-value=0.035 Score=52.21 Aligned_cols=58 Identities=28% Similarity=0.325 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH
Q 018455 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 221 (355)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~ 221 (355)
..+.+.+.+.+++.|++|+++++|++|..++ ++|.+|.. +|+ ++.|+.||+|+.....
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3377889999999999999999999999986 57888865 354 5789999999987654
No 65
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.77 E-value=0.044 Score=51.83 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|+.+++|++|..++ +++.+++.+|++++||.||.|+..+.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44557777788899999999999998876 44656666788899999999998754
No 66
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.72 E-value=0.05 Score=50.93 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=48.6
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
++.......+.+.+.+.+++.|++|+++++|++|..+++ .+.|.++++++.||.||+|+....
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~---~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN---GFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC---eEEEEECCcEEEcCEEEECCCCcc
Confidence 343333333778899999999999999999999987653 345777777899999999999743
No 67
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.46 E-value=0.052 Score=53.16 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=46.6
Q ss_pred cCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 018455 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (355)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~ 220 (355)
.+| +. +..+|.+.+++.|++|+++++|++|..++ |+|++|.. +|+ .+.| +.||+|+....
T Consensus 214 ~~G-~~-l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 214 AGG-QA-LAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred CCh-HH-HHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 445 44 77899998989999999999999998754 67888865 443 3556 58999998754
No 68
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.46 E-value=0.056 Score=53.20 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|+++++|++|..++ ++|.+|.. +++ +++| +.||+|+....
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 67889888999999999999999998865 56777755 333 5788 99999998875
No 69
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.42 E-value=0.059 Score=53.03 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~ 220 (355)
+...|.+.+++.|++|+++++|++|..+++ |+|++|.. +|+ .+.|+ .||+|+..-.
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 667788888889999999999999999755 67888866 343 47787 6999998654
No 70
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.39 E-value=0.063 Score=46.89 Aligned_cols=56 Identities=27% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VV~a~p~~~ 220 (355)
+...|.+.+.+.|++|+++++|.+|..+++ +++.+|.++ ..+++|+.||.|+..+.
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 667788888889999999999999998764 357777642 14789999999998754
No 71
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.39 E-value=0.057 Score=49.95 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
+...+.+.+.+.|++|+++++|++|+.+++ .+ .|.+++.++.||.||+|+.++..
T Consensus 151 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEADGD--GV-TVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEeeCC--eE-EEEeCCCEEEeeEEEEecCcchh
Confidence 445666677778999999999999998763 24 57776558999999999998753
No 72
>PRK10015 oxidoreductase; Provisional
Probab=95.37 E-value=0.08 Score=50.06 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|+.+++|+.|..++ +++.+|.+++++++||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 44457777788899999999999998776 44666777778899999999998754
No 73
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.34 E-value=0.094 Score=51.47 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=49.2
Q ss_pred ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
..++.+..+...|.+.+.+.|++|..+++|++|..++ |+|.||.. +|+ .+.|+.||+||....
T Consensus 113 ~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 113 AADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred cCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 3334444477888888888899999999999999864 67888864 353 578999999998754
No 74
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=95.31 E-value=0.069 Score=47.48 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 224 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l 224 (355)
.++.+.++++|+.++-+..|..++..+..+...+|++ +|..+.|+.+|+|+.+|..+-|
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL 216 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL 216 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence 5677888899999999999999996533233445655 7888999999999999987643
No 75
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.29 E-value=0.071 Score=50.04 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CC----eEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK----ETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g----~~~~ad~VV~a~p~~~~ 221 (355)
+...+.+.+++.|++|+.+++|++|..+++ .+ .+.+ ++ .+++||.||+|+.++..
T Consensus 199 ~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~--~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 199 FTTGLAAACARLGVQFRYGQEVTSIKTDGG--GV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EE-EEEEEcCCCCccceEecCEEEECCCcChH
Confidence 556778888889999999999999987663 34 3433 22 37899999999999864
No 76
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.29 E-value=0.077 Score=51.94 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (355)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~ 220 (355)
..+...|.+.+++.|++|+++++|++|..++ ++|.+|.. +|+ .+.|+ .||+|+..-.
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 3477888888989999999999999999875 67888876 454 46785 7999998654
No 77
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.28 E-value=0.067 Score=50.74 Aligned_cols=57 Identities=30% Similarity=0.343 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~~ 221 (355)
+.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+ +++ .+.++.||+|+.....
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 678888888899999999999999998654 56777765 333 4689999999987553
No 78
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.24 E-value=0.072 Score=51.10 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~ 220 (355)
+..++.+.+++.|++|+++++|++|+.+++ +.+ .|++ +| .+++||.||+|+..+.
T Consensus 180 l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 180 LTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 678888888889999999999999998654 223 3432 23 3689999999999876
No 79
>PRK07121 hypothetical protein; Validated
Probab=95.17 E-value=0.083 Score=50.93 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 018455 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (355)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~ 220 (355)
.+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.. +++ .+.| +.||+|+....
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3778898889899999999999999998754 56888866 333 5788 99999998755
No 80
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.17 E-value=0.11 Score=50.97 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=50.1
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+..++.+..+...|.+.+.+.|++|..++++++|..+++ |+|.||.. +|+ .+.|+.||+||....
T Consensus 119 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 119 AAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred ecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 333434444778888888888999999999999998654 67888865 343 578999999998754
No 81
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.01 E-value=0.13 Score=48.67 Aligned_cols=62 Identities=11% Similarity=0.257 Sum_probs=45.3
Q ss_pred ecCCcchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 018455 156 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 156 ~~gg~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~ 219 (355)
+....+..+.+.|.+.+++ .|++|+++++|++|..++ ++|.+|.. +++ ++.|+.||+|+...
T Consensus 122 ~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 122 FKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred cCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 3333333366778877765 589999999999998765 56777643 444 58999999999873
No 82
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.98 E-value=0.12 Score=50.93 Aligned_cols=57 Identities=26% Similarity=0.311 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhhH
Q 018455 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL 221 (355)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VV~a~p~~~~ 221 (355)
.+.+.|.+.+++.|++|+++++|.+|..++ ++|.+|.. +|+ ++.| +.||+|+.....
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 377889899999999999999999998765 56888876 343 4676 689999987643
No 83
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.96 E-value=0.14 Score=50.67 Aligned_cols=61 Identities=23% Similarity=0.228 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+.+..+...|.+.+.+.|++|..+++|++|..+++ |+|.||.. +|+ .+.|+.||+||....
T Consensus 146 ~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 146 RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 34444778888888888999999999999998754 57888864 343 678999999998754
No 84
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.95 E-value=0.11 Score=48.69 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhhHHHh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQEL 224 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~~~~l 224 (355)
+.+.+.+.+++.|++|+++++|.+++.++ +++..+.. +| ..++||.||+|+....-..|
T Consensus 261 L~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 261 LQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 77888888989999999999999999876 34655544 44 36899999999987544444
No 85
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.86 E-value=0.15 Score=44.50 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VV~a~p~~ 219 (355)
+.+.|.+.+.+.|++|+.++.|.+|..++++.++.+|+++ ..+++|+.||.|++..
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 5567777888889999999999999987642257787763 1478999999999865
No 86
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.80 E-value=0.16 Score=50.06 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=49.1
Q ss_pred ecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 156 ~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
..++.+..|...|.+.+.+.|++|.+++.|++|..+++ |+|.||.. +|+ .+.|+.||+||....
T Consensus 137 ~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 137 AADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred cCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 33344554778888887778999999999999998644 67888864 343 578999999998754
No 87
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.79 E-value=0.11 Score=49.95 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~ 221 (355)
+.+.|.+.+++.| ++|+++++|++|+.+++ +.+ .|++ +|+ +++|+.||+|+..+..
T Consensus 185 l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 185 LTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 6788888888877 69999999999998665 323 3432 243 6899999999998863
No 88
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.69 E-value=0.26 Score=46.12 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe----C--CeEEecCEEEEccChhhHHHh
Q 018455 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGISTLQEL 224 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--g~~~~ad~VV~a~p~~~~~~l 224 (355)
+. +...|.+.+++. |.+|++++.|+.|++.+|| -|.|.+ . ..+++|+.|++......+.-|
T Consensus 181 G~-LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg--~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 181 GA-LTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG--RWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HH-HHHHHHHHHHhCCCcEEEecCEeCeeEECCCC--CEEEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 55 778888888876 8999999999999999874 355544 2 358999999998888776543
No 89
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.69 E-value=0.11 Score=50.19 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh
Q 018455 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~ 220 (355)
.+.+.|.+.+++.|++|+++++|++|..++ |+|.+|.+ ++ .++.|+.||+|+....
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 367888888889999999999999998765 56777765 33 3689999999997543
No 90
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.68 E-value=0.13 Score=50.33 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~ 220 (355)
+..+...|.+.+++.|++|+++++|++|..++ ++|.+|.. +|+ .+.|+ .||+|+..-.
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 33467788888888999999999999999865 56888765 443 57886 6999887654
No 91
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.57 E-value=0.1 Score=46.49 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=44.5
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC----eEEecCEEEEccChhhHHHhhhcc
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK----ETYSAGAVVLAVGISTLQELIKNS 228 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g----~~~~ad~VV~a~p~~~~~~l~~~~ 228 (355)
|...++..+.+|++++.|++|..+++++++++|.+ ++ .++.++.||+|..+-...+|+-..
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S 266 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS 266 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred cchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence 44444444899999999999988644467889876 23 356789999999998777776544
No 92
>PRK07190 hypothetical protein; Provisional
Probab=94.54 E-value=0.17 Score=48.68 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+-+.|.+.+++.|++|+.+++|++|++++++ +. +++ +|++++|+.||.|...... .+.+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~-v~~~~g~~v~a~~vVgADG~~S~vR~~l 171 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CL-TTLSNGERIQSRYVIGADGSRSFVRNHF 171 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eE-EEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence 4456667788889999999999999998753 53 444 6779999999999998764 4443
No 93
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.52 E-value=0.22 Score=47.67 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
+..+.+.|.+.+++.|+++..+ .|+.|..++ +++.+|.++++.+.|+.||+|+.....
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG 176 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence 3347788988888899999875 899988755 567788888888999999999988653
No 94
>PRK06847 hypothetical protein; Provisional
Probab=94.51 E-value=0.15 Score=47.24 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+.+.|++|+++++|++|+.+++ .+ .|.+ +|++++||.||.|...+.
T Consensus 109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~-~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 109 LARILADAARAAGADVRLGTTVTAIEQDDD--GV-TVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EE-EEEEcCCCEEEcCEEEECcCCCc
Confidence 556777777778999999999999998764 24 4555 778899999999999875
No 95
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.41 E-value=0.22 Score=49.57 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+.|.+.+++.|++|+++++|++|..++ |+|.||.+ +|+ .+.|+.||+||....
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 556667778899999999999999865 57888865 343 578999999998744
No 96
>PRK12839 hypothetical protein; Provisional
Probab=94.28 E-value=0.18 Score=49.50 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe-EE-ecCEEEEccChhh
Q 018455 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TY-SAGAVVLAVGIST 220 (355)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~-~~-~ad~VV~a~p~~~ 220 (355)
.+...|.+.+++.|++|+++++|++|..+++ |+|++|.. +|+ .+ .++.||+|+....
T Consensus 215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 3677888888889999999999999987654 57888865 343 33 4589999998754
No 97
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.25 E-value=0.27 Score=48.38 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=48.5
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
++..+.+..+.+.|.+.+.+.|++|..+++|++|..++ |+|.++.. +|+ .+.|+.||+|+....
T Consensus 128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 33333344477888888888899999999999998765 56777753 343 589999999998854
No 98
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.24 E-value=0.26 Score=48.47 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
.+..+...|.+.+.+.|++|..+++|++|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 127 ~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 127 TGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 343366788888888899999999999999875 56777754 353 589999999998754
No 99
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.24 E-value=0.26 Score=48.81 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHHH----cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455 160 LREKIFEPWMDSMRT----RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~----~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~ 219 (355)
.+..+...|.+.+++ .|++|+++++|++|..+++ |+|.||.. +|+ .+.|+.||+||...
T Consensus 127 tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 127 TGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred ChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 343355666655543 3799999999999998654 57888865 343 57899999999764
No 100
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.12 E-value=0.31 Score=48.14 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+.+..+...|.+.+.+.|++|+.+++|+++..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 145 ~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 145 RTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred CChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 34444778888888888999999999999998654 56888864 343 578999999998754
No 101
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.10 E-value=0.31 Score=47.85 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+..+...|.+.+.+.|++|..+++|++|..++ |+|.||.. +|+ .+.|+.||+|+....
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 33366788888777899999999999999875 67888865 233 578999999998754
No 102
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.09 E-value=0.23 Score=44.00 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++++++++|++|..+++ .+ .+.+ ++++++||.||.|+....
T Consensus 93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 93 FDEQLAERAQEAGAELRLGTTVLDVEIHDD--RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 446677778888999999999999998774 24 2433 456899999999999864
No 103
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.06 E-value=0.28 Score=48.63 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~ 219 (355)
.+..+...|.+.+.+.|++|..+++|+++..+++ |+|.||.. +|+ .+.|+.||+||...
T Consensus 164 tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 164 TGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 3344778888888889999999999999998444 67888864 353 57899999999664
No 104
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.02 E-value=0.23 Score=48.94 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--C-Ce-EEecC-EEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE-TYSAG-AVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g~-~~~ad-~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|+++++|++|..++ ++|++|.+ + ++ .+.++ .||+|+....
T Consensus 216 l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 216 LAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 66788888888999999999999999875 56878865 2 33 46785 7999998764
No 105
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.99 E-value=0.27 Score=45.35 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+...+.+.+++ .+.+| ....|++|..++ ++|.+|.+ +|+++.+|.||+|+.+
T Consensus 97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 44566677776 45777 478999999988 67999988 6899999999999988
No 106
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.80 E-value=0.29 Score=45.77 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+.+.|++|+.+++|++|+.+++ .+ .|++ +|++++||.||.|...+.
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDE--GV-TVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EE-EEEECCCCEEEeCEEEEcCCCCh
Confidence 667788888888999999999999998764 25 4665 677899999999998764
No 107
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.76 E-value=0.24 Score=47.58 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEE---e-CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---C-GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~---~-~g~--~~~ad~VV~a~p~~~ 220 (355)
+.+++.+.+.+ .|++|+++++|+.|..+++ +.+ .|. + +|+ +++||.||+|+.++.
T Consensus 186 L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 186 LTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 66778888754 5899999999999998733 223 343 3 342 689999999999987
No 108
>PRK06116 glutathione reductase; Validated
Probab=93.75 E-value=0.25 Score=47.06 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|+++++|.+|+.+++ +.+ .|.+ +|++++||.||+|+..
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceE-EEEEcCCcEEEeCEEEEeeCC
Confidence 566788888899999999999999987654 334 3555 6788999999999854
No 109
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.75 E-value=0.35 Score=48.10 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
.+..+...|.+.+.+.|++|..++.|++|..+++ |+|.+|.. +|+ .+.|+.||+||....
T Consensus 185 tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 185 TGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 3444778888888788999999999999988744 57888864 353 678999999998754
No 110
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.73 E-value=0.27 Score=48.07 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 018455 160 LREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~ 219 (355)
.+..+.+.|.+.+++ .|++|+++++|.+|..+++.|+|.||.. +|+ .+.|+.||+||...
T Consensus 132 ~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 132 TGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred ChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 334477888888765 4899999999999998642256888865 454 47899999999874
No 111
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.60 E-value=0.2 Score=46.18 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~ 221 (355)
+...|.+.+.+. |++|+.+++|++|+. + .|.+++++++||+||+|+.++..
T Consensus 147 ~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 147 AIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChh
Confidence 556777777665 999999999999963 2 35665556789999999999753
No 112
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.53 E-value=0.25 Score=47.93 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~ 220 (355)
.+..+.+.|.+.+.+. |++|+.+++|++|..++ |+|.+|.+ +++ ++.|+.||+|+....
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 3444778888887764 89999999999998765 56878765 333 689999999998753
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.50 E-value=0.27 Score=45.86 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|+.+++|++|+.+++ .+ .|++ +|++++||.||.|...+.
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~--~v-~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDAD--RV-RLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCC--eE-EEEECCCCEEEeCEEEEecCCCc
Confidence 567788888888999999999999998764 25 4665 577899999999998865
No 114
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.42 E-value=0.41 Score=38.25 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=30.9
Q ss_pred cCcEEE-cCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 175 RGCEFL-DGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 175 ~G~~i~-l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
.|++|+ ...+|+.|...+++ . .|.+ +|..+.||+||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~--~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG--Y-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc--E-EEEECCCCEEEeCEEEECCCC
Confidence 455543 67899999998863 3 4544 7889999999999864
No 115
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.41 E-value=0.3 Score=45.72 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~~ 226 (355)
+.+.|.+.+++.|++|+.+++|.+|+.++++ + .|++ +|++++||.||.|...+. ..+++.
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGDD--W-LLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 5567777777789999999999999987753 4 4655 677899999999999875 455543
No 116
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.40 E-value=0.37 Score=46.44 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-C-C--eEEecCEEEEccChhh
Q 018455 162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G-K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 162 ~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g--~~~~ad~VV~a~p~~~ 220 (355)
..+.+.|.+.+++ .|++|+.++.|++|..++ +++.+|.+ + + ..+.|+.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 3367788888877 689999999999998765 55777765 2 3 4689999999999865
No 117
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=93.40 E-value=0.43 Score=47.69 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...|.+.+.+.|++|+.+++|++|..++ |+|.||.+ +|+ .+.|+.||+||....
T Consensus 160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 160 MLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 55678887888899999999999999865 56778754 353 468999999998754
No 118
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.39 E-value=0.36 Score=45.11 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+-|++.+++.|++++.+++|+.+..++++ .+.++..++.+++|+.||.|..+..
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEEEcCCEEEEcCEEEECCCcch
Confidence 4455777888899999999999999999863 3433334567999999999998764
No 119
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.38 E-value=0.32 Score=45.06 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=45.8
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+.+.|.+.+.+ .|++|+.+++|++|+.++++ + .|++ +|++++||.||.|...+. +.+.+
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDY--V-RVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--E-EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 66778787777 49999999999999987743 5 4655 677899999999999875 34443
No 120
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=93.37 E-value=0.6 Score=42.33 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=60.8
Q ss_pred hhcccccHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC---CcceEEecCCcchHHHHH
Q 018455 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEP 167 (355)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~---~~~~~~~~gg~~~~l~~~ 167 (355)
+.+|+.|+.+|+.++.+...+ ..+|..+ ++-.. =-|+..+..++..++..-.+ -+.+..-+-..-+.++.+
T Consensus 159 E~L~~~tI~d~Fse~FF~sNF-W~yW~tm----FAFek-WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlP 232 (587)
T COG4716 159 EKLDDLTIEDWFSEDFFKSNF-WYYWQTM----FAFEK-WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLP 232 (587)
T ss_pred HhcCCccHHHhhhHhhhhhhH-HHHHHHH----HhhhH-HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHH
Confidence 468999999999987654433 2234333 22222 23566665555544311111 111222233333347899
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCC
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERC 195 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~ 195 (355)
|...|+++|+++.++++|+.|..+...|
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t~g 260 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDTPG 260 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccCcc
Confidence 9999999999999999999999875434
No 121
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.35 E-value=0.33 Score=45.03 Aligned_cols=56 Identities=23% Similarity=0.184 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~ 222 (355)
+...+++.+++.| ..+..+++|..++.+. ++++|.+++.++.||+||+|+.++.-.
T Consensus 158 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 158 LTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 6678888888888 5777799999999862 256788876669999999999988644
No 122
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.26 E-value=0.32 Score=33.85 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~ 202 (355)
+..-+.+.+.+.+++.|++|++++.|.+|..+++ + +. |++
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~ 77 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTL 77 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEE
Confidence 3333567788889999999999999999999886 3 65 765
No 123
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=93.25 E-value=0.35 Score=47.32 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=41.1
Q ss_pred HHHHHHHHHH---Hc-CcEEEcCceeeEEEecCCCCeEEEEEe----C--------------C-eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMR---TR-GCEFLDGRRVTDFIYDEERCCISDVVC----G--------------K-ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~---~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--------------g-~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.++ +. |++|++++++++|..++ |+|++|.. + + .++.|+.||+||..-.
T Consensus 150 ~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 150 VVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 5567766654 23 58999999999999864 67889874 1 1 2578999999998654
No 124
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.20 E-value=0.33 Score=46.98 Aligned_cols=54 Identities=24% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~ 220 (355)
+...++..+.++|++|+.+++|++|..++ +. ++|++ +| .++.|+.||.|+.++.
T Consensus 157 l~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 157 LVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 55566667778899999999999998765 32 35544 24 3789999999999976
No 125
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.12 E-value=0.35 Score=47.30 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+..+.+.|.+.+.+.|++|+++++|++|..+++ ++|.+|.. +|+ .+.|+.||+||....
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 333667888888788999999999999998763 45777753 343 588999999998754
No 126
>PRK08275 putative oxidoreductase; Provisional
Probab=93.10 E-value=0.41 Score=46.92 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.|++|..++.|++|..+++ |++.+|.. +|+ .+.|+.||+|+....
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 667888888888999999999999998734 56777753 343 578999999998754
No 127
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=93.10 E-value=0.19 Score=48.84 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=66.7
Q ss_pred hhCCChhhccHHHHHHHHHHHHHhcCC-CcceEEecCC-c-chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEE
Q 018455 123 GLFAPAEQCSAAATLGILYFIILAHQK-NFDLVWCRGT-L-REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD 199 (355)
Q Consensus 123 ~~~~~~~~~Sa~~~~~~~~~~~~~~~~-~~~~~~~~gg-~-~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~ 199 (355)
.++...+-+|-..+...+... +-.+ -..+..|..| | ...++++|+..+++.|+.|.-+++|++|....++ ..+
T Consensus 147 a~g~e~~lLsPee~~~~~pLL--n~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~--~~g 222 (856)
T KOG2844|consen 147 AHGVESELLSPEETQELFPLL--NVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK--FGG 222 (856)
T ss_pred hccceeeecCHHHHHHhCccc--chhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC--ccc
Confidence 566677777776665544431 1111 0112335433 3 2338899999999999999999999999998753 558
Q ss_pred EEeCCeEEecCEEEEccChhh
Q 018455 200 VVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 200 v~~~g~~~~ad~VV~a~p~~~ 220 (355)
|.+.-+.+++.+||-|+..|.
T Consensus 223 VeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 223 VETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred eeccCcceecceEEechhHHH
Confidence 988767899999999999987
No 128
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.09 E-value=0.21 Score=50.04 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=47.4
Q ss_pred EEecCCc--chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhH
Q 018455 154 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 221 (355)
Q Consensus 154 ~~~~gg~--~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VV~a~p~~~~ 221 (355)
.++.+|. ...+.+.+.+.+++ |++|+.+++|++|..+++ .+ .|.++ |..+.||.||+|+.++..
T Consensus 398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~--~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD--GW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC--EE-EEEECCCcEEECCEEEECCCCCcc
Confidence 4455553 12266778888877 999999999999998763 34 47664 556789999999998753
No 129
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.07 E-value=0.51 Score=46.58 Aligned_cols=61 Identities=28% Similarity=0.340 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCC--CCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~--~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
.+..+.+.|.+.+.+.|++|..++.|++|..+++ +|+|.||.. +|+ .+.|+.||+|+....
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 3444778888888888999999999999987652 145778754 344 578999999998754
No 130
>PRK06184 hypothetical protein; Provisional
Probab=93.06 E-value=0.46 Score=45.96 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+-+.|.+.+.+.|++|+++++|++|++++++ ++ +++ ++++++||.||.|...+.. .+.+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADG--VT-ARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 4456777787889999999999999988753 53 433 3568999999999998864 4444
No 131
>PRK06834 hypothetical protein; Provisional
Probab=93.00 E-value=0.36 Score=46.47 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+++.|++|+.+++|++|+.++++ + .|++ +|++++||.||.|...+.. .+.+
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v-~v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTG--V-DVELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 5566777788889999999999999998753 5 4655 5678999999999988753 4443
No 132
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.96 E-value=0.41 Score=45.45 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|+++++|.+|..+ +++..+.++++++.||.||+|++..
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCC
Confidence 5567777888899999999999999643 2355566677789999999998864
No 133
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.70 E-value=0.48 Score=44.97 Aligned_cols=53 Identities=26% Similarity=0.247 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++++++++|++|..++ +.+ .+..+|+++++|.||+|+...
T Consensus 200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 200 VAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCC
Confidence 55566677888999999999999998754 334 355577899999999987543
No 134
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.69 E-value=0.35 Score=44.86 Aligned_cols=52 Identities=29% Similarity=0.303 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-EEecCEEEEccChh
Q 018455 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-TYSAGAVVLAVGIS 219 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-~~~ad~VV~a~p~~ 219 (355)
...+.+...+.|+++|++|+++++|++|+.+ +|++ +|+ ++.++.||-|+...
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCeeEecCEEEEcCCCc
Confidence 3336677778899999999999999999854 2444 455 69999999998754
No 135
>PRK07045 putative monooxygenase; Reviewed
Probab=92.68 E-value=0.55 Score=43.69 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=44.9
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHH
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQE 223 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~ 223 (355)
+.+.|.+.+.. .|++|+++++|+.|+.+++ +.++.|++ +|+++++|.||.|..... ..+
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 44566666654 5789999999999998765 33445666 678999999999999875 345
No 136
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=92.64 E-value=0.31 Score=45.46 Aligned_cols=58 Identities=24% Similarity=0.309 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
.+.+.+...++++|+++++++.+.+++-+.+ |++..|.+ +|.+++||.||+-+...-.
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeeccccc
Confidence 3667788889999999999999999998877 67777777 7899999999997766543
No 137
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.60 E-value=0.55 Score=45.57 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VV~a~p~~~ 220 (355)
+...+.+.+.+ .|++|+++++|++|..++ ++|.+|.. +|+ .+.|+ .||+|+....
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 55667666655 489999999999999875 67888865 443 57886 7999998753
No 138
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.46 E-value=0.47 Score=45.03 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|+++++|.+|..++ +.+ .+..+++++.+|.||+|+..
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~ 252 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecC
Confidence 56778888889999999999999998765 334 45555556899999999754
No 139
>PRK14694 putative mercuric reductase; Provisional
Probab=92.44 E-value=0.51 Score=45.22 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|.+|+.++ +.+ .+.++++++++|.||+|+...
T Consensus 220 ~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 220 VGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCC
Confidence 56778888889999999999999998765 323 455666679999999988643
No 140
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.41 E-value=0.56 Score=44.85 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|+++++|++|+.+++ .+ .+.+ +| +++++|.||+|+...
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v-~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 215 ISKLAERALKKRGIKIKTGAKAKKVEQTDD--GV-TVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 566777888899999999999999987653 24 3544 44 679999999997654
No 141
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.39 E-value=0.53 Score=45.31 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|++++.|++|..+++ + ...|.+ +|+++++|.||+|+..
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~-~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNAD-G-SKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-c-eEEEEEcCCCEEEcCEEEEeeCC
Confidence 667888889999999999999999987654 2 224555 6778999999998864
No 142
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.33 E-value=0.64 Score=44.96 Aligned_cols=54 Identities=20% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC----eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g----~~~~ad~VV~a~p~~~ 220 (355)
+...++..++++|++|+.+++|++|..++ + .++|++ ++ .++.|+.||.|+.++.
T Consensus 157 l~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 157 LVVLNALDAAERGATILTRTRCVSARREG--G-LWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHCCCEEecCcEEEEEEEcC--C-EEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 45566677788999999999999999875 3 235655 32 3689999999999975
No 143
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.30 E-value=0.47 Score=45.34 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|+++++|++|..+++ .+ .+++ +|+++++|.||+|+...
T Consensus 218 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~--~~-~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 218 ISDALSYHLRDSGVTIRHNEEVEKVEGGDD--GV-IVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHcCCEEEECCEEEEEEEeCC--eE-EEEECCCCEEEeCEEEEeecCC
Confidence 567788888889999999999999987653 24 3555 57789999999998754
No 144
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.16 E-value=0.65 Score=43.08 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+++.|++|+++++|.+|..+++ .+ .|.+ +|++++||.||+|+....
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTDS--GI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEccCC--EE-EEEEcCCcEEECCEEEECcCCCc
Confidence 455677778889999999999999987653 23 4555 678999999999987643
No 145
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.06 E-value=0.56 Score=48.28 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
..+.+.+.++++|++|++++.|.+|..+++ +.+..|.+ +|+++++|.||+|++..-
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCccc
Confidence 445677888899999999999999986543 22335555 788999999999997643
No 146
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.00 E-value=0.75 Score=43.85 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+-|.+.+++.|++++.++ |.++..+++ |.+.+|++ +|++++||.||=|+....
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccc
Confidence 55668888888999998875 888888876 67878888 688999999999998754
No 147
>PRK14727 putative mercuric reductase; Provisional
Probab=91.98 E-value=0.56 Score=45.08 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+++.|++|+++++|++|..+++ .+ .+..+++++.+|.||+|++...
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--~~-~v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDDN--GF-VLTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeCC--EE-EEEEcCCeEEeCEEEEccCCCC
Confidence 556677888889999999999999987653 23 4555556799999999998653
No 148
>PLN02697 lycopene epsilon cyclase
Probab=91.89 E-value=0.66 Score=44.99 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+.+.|+++ ++++|++|..++++ +..+++ +|++++|+.||.|+.++.
T Consensus 194 L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~--~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 194 LHEELLRRCVESGVSY-LSSKVDRITEASDG--LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc--EEEEEEcCCcEEECCEEEECCCcCh
Confidence 5567777777789998 88999999887643 433444 678899999999999987
No 149
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.82 E-value=0.61 Score=44.36 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++++++++|.+|..++++ + .|.+ +|+++++|.||+|++..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~-~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDDG--L-KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--E-EEEEcCCcEeecCEEEEeeCCC
Confidence 5566777788899999999999999876542 3 3544 67789999999998753
No 150
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.76 E-value=0.79 Score=43.78 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|+++++|.+|+.+++ .+. +.+ +| +++.+|.||+|+...
T Consensus 213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v~-v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 213 VSKVVAKALKKKGVKILTNTKVTAVEKNDD--QVV-YENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeCC--EEE-EEEeCCcEEEEEeCEEEEecCCc
Confidence 566777888889999999999999987663 353 544 45 479999999998653
No 151
>PRK07804 L-aspartate oxidase; Provisional
Probab=91.72 E-value=0.6 Score=45.62 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-------CC--eEEecCEEEEccChhh
Q 018455 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------~g--~~~~ad~VV~a~p~~~ 220 (355)
..+.+.|.+.+++.|++|+.+++|.+|..+++ |+|.+|.+ ++ ..+.|+.||+|+....
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 33778888888888999999999999998754 46777754 12 3688999999998754
No 152
>PLN02507 glutathione reductase
Probab=91.69 E-value=0.68 Score=44.76 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|++++.|++|+.+++ .+ .|.+ +|+++++|.||++++.
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~--~~-~v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKTEG--GI-KVITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCC--eE-EEEECCCcEEEcCEEEEeecC
Confidence 556677788889999999999999987653 24 3555 5678999999999764
No 153
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=91.69 E-value=11 Score=34.89 Aligned_cols=54 Identities=26% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
+-+.+.+.++ .++.+++++.|++|+.++++ + .|++ +|++++|+.||-|.++...
T Consensus 89 f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~--~-~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 89 FYEFLLERAA-AGGVIRLNARVTSIEETGDG--V-LVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHhh-hCCeEEEccEEEEEEecCce--E-EEEECCCCEEEeeEEEECCCcccc
Confidence 4455666666 56688999999999988742 3 3555 6789999999999986543
No 154
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.66 E-value=0.72 Score=42.68 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+.+.| ++|+.+++|++|..+++ .+ .|++ +|+++++|.||.|...+.
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~--~~-~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHSD--HV-ELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecCC--ee-EEEECCCCEEEeeEEEEeCCCCC
Confidence 5567778777777 99999999999998764 35 4655 677899999999988764
No 155
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.65 E-value=0.74 Score=42.90 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
+.+.|.+.+.+.| ++|+.+++|++|..++++ + .|++ +|++++||.||.|...+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--V-TVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--e-EEEEcCCCEEecCEEEECCCcChH
Confidence 4556777776654 899999999999987642 5 3555 6778999999999988754
No 156
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.55 E-value=0.71 Score=44.21 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|+++++|.+|+.+++ .+ .|.+ +|+++++|.||+|+..
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~--~~-~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTGD--GV-VVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeCC--EE-EEEECCCcEEEecEEEEeecC
Confidence 556677888889999999999999987653 24 3554 6788999999998764
No 157
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.50 E-value=1.1 Score=44.62 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHHc--------C-----cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 018455 161 REKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~--------G-----~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~ 219 (355)
+..+.+.|.+.+++. | ++|..+++|.+|..++ |+|.+|.. +|+ .+.|+.||+|+...
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 212 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI 212 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence 333677888877666 6 8999999999999765 56777753 343 57999999999873
No 158
>PRK09897 hypothetical protein; Provisional
Probab=91.41 E-value=0.71 Score=44.80 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHHHHHHHHcC--cEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccCh
Q 018455 166 EPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGI 218 (355)
Q Consensus 166 ~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+.| ++|+.+++|++|..++++ + .|++ + |+++.||.||+|+..
T Consensus 111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~-~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 111 LRLVDQARQQKFAVAVYESCQVTDLQITNAG--V-MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--E-EEEECCCCeEEEcCEEEECCCC
Confidence 34445555666 688899999999987742 4 4665 4 468999999999985
No 159
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.41 E-value=1.1 Score=44.26 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
.+..+.+.|.+.+.+ .|++|+.++.|.+|..++ +++.+|.. +|+ .+.|+.||+|+....
T Consensus 135 tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 135 TGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred chHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 334366788887765 689999999999998865 56777753 354 578999999998763
No 160
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=91.32 E-value=0.87 Score=45.16 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...|.+.+++.| ++|+.+++|.+|..++ ++|.+|.. +|+ ++.|+.||+|+....
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 5566777777665 9999999999998765 56777742 343 689999999999754
No 161
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.31 E-value=0.96 Score=42.28 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+++.|++|+++++|++|.. + +.+ .|.+ +|+++.||.||+++....
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEE-EEEECCCCEEECCEEEECCCCCh
Confidence 445567777889999999999999976 3 224 4555 678899999999987643
No 162
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=91.27 E-value=0.9 Score=43.29 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|+++++++.|++|..+++ +.+ .|.+ +| +++++|.||+++...
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence 566777888889999999999999987543 323 4555 56 579999999998754
No 163
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=91.25 E-value=0.45 Score=46.39 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe---EEecCEEEEccChhhHHHhh
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~---~~~ad~VV~a~p~~~~~~l~ 225 (355)
++.+.+|++++.|++|..++ +++++|.+ +++ .+.++.||+|..+-...+|+
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 35579999999999999975 67888876 332 35789999999986555554
No 164
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=91.11 E-value=0.86 Score=42.41 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+++. |++|+.+++|+++..++++ + .|.+ +|++++||.||.|...+.. .+.+
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG--W-ELTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--E-EEEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 445677766665 8999999999999887642 4 4665 6778999999999998753 4443
No 165
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=91.10 E-value=0.75 Score=44.70 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=39.4
Q ss_pred HcCcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhhHHHhh
Q 018455 174 TRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VV~a~p~~~~~~l~ 225 (355)
....+|++++.|++|+.++++ ++|.+|.. +|+ +++|+.||+|+.+-...+|+
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 334899999999999987653 46777744 243 58999999999887766665
No 166
>PRK13748 putative mercuric reductase; Provisional
Probab=90.90 E-value=0.86 Score=44.75 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|+++++|++|+.++ +.+ .+.++++++++|.||+|+...
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCC
Confidence 55677788888999999999999998765 324 355555579999999998753
No 167
>PRK07588 hypothetical protein; Provisional
Probab=90.85 E-value=0.65 Score=43.25 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QEL 224 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l 224 (355)
+.+.|.+.+. .|++|+++++|++|+.++++ + .|++ +|+++++|.||.|...+.. .+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG--V-RVTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe--E-EEEECCCCEEEeCEEEECCCCCccchhh
Confidence 4444555443 37899999999999987742 5 3555 6788999999999988753 443
No 168
>PRK08071 L-aspartate oxidase; Provisional
Probab=90.82 E-value=0.53 Score=45.64 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+. .|++|+.+++|.+|..++ +++.+|.+ +|+ .+.|+.||+|+....
T Consensus 132 i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 132 LLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 6677777665 589999999999998765 56777765 233 678999999998754
No 169
>PLN02815 L-aspartate oxidase
Probab=90.75 E-value=1.2 Score=43.93 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCC--eEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~--~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...|.+.+.+. |++|..+++|++|..+++++ +|.||.. +|+ .+.|+.||+||....
T Consensus 157 i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 157 IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 667787777654 89999999999999865433 3778764 343 568999999998653
No 170
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.64 E-value=1 Score=39.96 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|+++++ +.|.+|..+++ .. .|.+ +++++++|.||+|+...
T Consensus 59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~-~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSDR--PF-KVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHcCCeEEE-EEEEEEEecCC--ee-EEEeCCCCEEEeCEEEECCCCC
Confidence 556777778888999999 89999988653 23 4655 56789999999999864
No 171
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=90.56 E-value=0.95 Score=41.08 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh-HHHhhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST-LQELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~-~~~l~~ 226 (355)
+.+.|.+.+++.|++|+.+++|..++.++++ +..+.. +| ++++||.||-|-..+. +.+.+.
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~--~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQDDDG--VTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEETTE--EEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHhhhhhhhhhhhhheeeeecccccccccc--cccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 5567888888889999999999999988753 433332 24 3789999999999886 444443
No 172
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.36 E-value=1.3 Score=42.31 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|+++++|++|..++ +.+ .+.+ +| +++++|.||+|+..
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 215 VSKEIAKQYKKLGVKILTGTKVESIDDNG--SKV-TVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeE-EEEEEecCCCeEEEEeCEEEECcCc
Confidence 55678888889999999999999998654 323 3332 45 47999999999864
No 173
>PRK06370 mercuric reductase; Validated
Probab=90.33 E-value=1.3 Score=42.43 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|+++++|.+|..+++ +....+.. + ++++++|.||+|+...
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 556677788889999999999999987653 21112222 2 4579999999998743
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.32 E-value=1.1 Score=43.59 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|.+++++++|.+|..+++ .+.|.+ +|+++.||.||+|+...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~---~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAG---LIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCC---eEEEEECCCCEEEcCEEEECCCCC
Confidence 667788888888999999999999998753 234655 56789999999999974
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.31 E-value=1.1 Score=43.65 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++++++++|.+|..+++ .. .|.+ +|+++.+|.+|+|+...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~--~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDG--LI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCC--eE-EEEECCCCEEEeCEEEECCCCC
Confidence 556777778888999999999999987653 23 4655 56789999999999875
No 176
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.24 E-value=0.95 Score=46.39 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
..+.+.+.++++|++|++++.|++|..++ ++.+|++ +|+++++|.||+|++..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCC
Confidence 34556777889999999999999997543 2456766 68899999999999854
No 177
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.19 E-value=0.39 Score=44.06 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=49.8
Q ss_pred cCCcchHHHHHHH----HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhh
Q 018455 157 RGTLREKIFEPWM----DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK 226 (355)
Q Consensus 157 ~gg~~~~l~~~l~----~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l~~ 226 (355)
++.|..++++-|. +.+++.|++|+-|..|.++..... ++ .+.+ ||.+++.|.||+|+.-.--..|..
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~--nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK--NL-VLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc--ce-EEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 5778777766655 446678999999999999998873 35 3666 789999999999987543334433
No 178
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=90.12 E-value=1.4 Score=42.18 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCC--eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g--~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|++|+.++ +.+ .+..+| +++++|.||+|+...
T Consensus 213 ~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 213 IAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCc
Confidence 55677788888999999999999998654 223 344454 378999999998754
No 179
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.04 E-value=1 Score=42.46 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+++.|+++++++.|.+|..++ .+ .+..+|+++++|.||+|++...
T Consensus 181 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~~-v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 181 MNQIVEEELKKHEINLRLNEEVDSIEGEE---RV-KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEecCC---CE-EEEcCCCEEEeCEEEECCCccC
Confidence 55667778888999999999999997543 23 2334788999999999988653
No 180
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=89.99 E-value=1.2 Score=41.32 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+++.| ++++ +++|++|+.++++ + .|++ +|++++||.||.|...+.
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDPDA--A-TLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--E-EEEECCCCEEEeeEEEEeCCCCc
Confidence 5677888888777 8898 9999999877642 4 4666 567899999999999864
No 181
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.94 E-value=1.4 Score=42.34 Aligned_cols=53 Identities=9% Similarity=0.229 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|.+|+++++|++|..+++ .+ .+.+ + | +++++|.||+|+...
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~--~v-~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGK--GV-SVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcCC--EE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence 556777888889999999999999987653 24 3443 3 3 478999999998643
No 182
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=89.88 E-value=1.5 Score=40.77 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhhH-HHhhh
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGISTL-QELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VV~a~p~~~~-~~l~~ 226 (355)
+.+.|.+.+.+.+ ++++.+++|+.++.++++ +. +++ +|++++||.||-|-..+.. .+.+.
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~--v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDG--VT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc--eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 5677888887766 899999999999999853 64 544 6789999999999998754 55555
No 183
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=89.86 E-value=2.1 Score=42.27 Aligned_cols=59 Identities=25% Similarity=0.200 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~ 220 (355)
.+..|..+|.+.+.+ .|++|..++.|++|..++ |+|.||.. +| ..+.|+.||+|+....
T Consensus 130 ~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 130 TGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 444477788877765 478999999999999875 56888753 45 3678999999998754
No 184
>PRK06185 hypothetical protein; Provisional
Probab=89.78 E-value=1.7 Score=40.58 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+.+.|.+.+.+ .|++|+.+++|.++..++ +++++|.+ +| .+++||.||.|...+. +.+.+
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 45667666655 478999999999999876 34655554 45 3799999999999875 34443
No 185
>PRK08244 hypothetical protein; Provisional
Probab=89.61 E-value=1.7 Score=41.88 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+-+.|.+.+++.|++|+.+++|++|+.++++ + .|++ +| ++++||.||.|...+. ..+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--V-EVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--E-EEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 4456667777789999999999999988753 4 3443 35 4799999999998875 34443
No 186
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.55 E-value=1.1 Score=42.38 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.++++|++|+++++|.+|.. + .|.+ +|++++||.||++++.
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVLD--K-----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEeC--C-----EEEECCCCEEEccEEEEccCC
Confidence 566777889999999999999999863 2 2334 6889999999998763
No 187
>PLN02463 lycopene beta cyclase
Probab=89.55 E-value=1.3 Score=42.08 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+.+.|++++ .++|++|+.+++ .+ .|++ +|++++||.||.|+....
T Consensus 116 L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 116 LKSKMLERCIANGVQFH-QAKVKKVVHEES--KS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--eE-EEEECCCCEEEcCEEEECcCCCc
Confidence 45567777777899986 679999998764 24 5766 567999999999998753
No 188
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.52 E-value=1.3 Score=41.11 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+...|.+.+.+ .|++|+.+++|++++.++++ + .|++ +|.+++||.||.|...+.. .+.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--N-RVTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--E-EEEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 33456566554 46899999999999988753 5 4666 6789999999999998754 4443
No 189
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=89.49 E-value=1.1 Score=47.99 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH---cCcEEEcCceeeEEEecCC----C---CeEEEEEe------CCe--EEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRT---RGCEFLDGRRVTDFIYDEE----R---CCISDVVC------GKE--TYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~---~G~~i~l~~~V~~I~~~~~----~---~~v~~v~~------~g~--~~~ad~VV~a~p~~~~ 221 (355)
+...+.+.+++ .|++|+++++|+++..+++ | ++|+||.. +|+ .+.|+.||+||..-..
T Consensus 546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 45667777664 4899999999999998642 2 26888865 243 5789999999987543
No 190
>PRK09126 hypothetical protein; Provisional
Probab=89.47 E-value=1.5 Score=40.75 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHHHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 164 l~~~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+.+.+.+.+. ..|++|+.+++|++++.++++ + .|.+ +|++++||.||.|..... ..+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--A-QVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--E-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 4445555554 468999999999999887642 4 4655 678999999999999864 34443
No 191
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=89.43 E-value=2.1 Score=42.23 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~~ 220 (355)
.+..+...|.+.+.+. +++|..++.|++|..++ |+|.||.. +| ..+.|+.||+|+....
T Consensus 131 ~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 131 TGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred cHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 3433667777776654 78999999999999865 56777643 45 3688999999998744
No 192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=89.41 E-value=1.3 Score=43.43 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+...+.+.+.+. |++| +.+.|.+|..++ ++|.+|.+ +|..+.|+.||+|+....
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 445566666654 6787 577899998876 55878887 678999999999999643
No 193
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=89.37 E-value=1.6 Score=41.74 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++.|++|+++++|++|..+++ .+ .+.+ +++++++|.||+|+..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~~-~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGG--GK-IITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--EE-EEEEEeCCCceEEEeCEEEEeECC
Confidence 556677778889999999999999987653 23 3433 2368999999999864
No 194
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.20 E-value=3.7 Score=39.29 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=79.0
Q ss_pred EEecCCcc-hHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh--hHHHh
Q 018455 154 VWCRGTLR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS--TLQEL 224 (355)
Q Consensus 154 ~~~~gg~~-~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~--~~~~l 224 (355)
.|..|-.. +++.-.++=-+.++|..+.-..+|.++..+++ |++.|+.+ .|+ .++|+.||-||.|- .+.++
T Consensus 215 VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 215 VYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred EEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 34455432 22333333334568999988899999999887 46667655 354 56788899999874 34554
Q ss_pred hhcccccCcHHHHhhccCCcccEEEEEEEEccCCCCCCCCcceeccCCCccceeeEcccccccccCCCceEEEEEeeCC-
Q 018455 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA- 303 (355)
Q Consensus 225 ~~~~~l~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~- 303 (355)
..+.. . .+ ..+...+|+.+.+-+. |...+ ++.+...-+.++|=. |. .+.++...+=.+.
T Consensus 294 dd~~~---~-------~i-~~pSsGvHIVlP~yY~-P~~mG-lldP~TsDgRViFfl----PW---qg~TIaGTTD~pt~ 353 (680)
T KOG0042|consen 294 DDEDA---K-------PI-CVPSSGVHIVLPGYYC-PENMG-LLDPKTSDGRVIFFL----PW---QGKTIAGTTDIPTS 353 (680)
T ss_pred ccccc---C-------ce-eccCCceeEEcccccC-Ccccc-cccCCCCCCcEEEEe----cc---CCceeeccCCCCCC
Confidence 33211 1 11 2245567887776554 22222 211111112223322 21 0122211110111
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhc
Q 018455 304 NELMPLKDDQVVAKAVSYLSKCI 326 (355)
Q Consensus 304 ~~~~~~~~ee~~~~~~~~l~~~~ 326 (355)
......+.|+=++.+++++..++
T Consensus 354 v~~~P~PtE~dIqfIL~ev~~yl 376 (680)
T KOG0042|consen 354 VTHSPTPTEDDIQFILKEVQHYL 376 (680)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhh
Confidence 12233444555778999999987
No 195
>PRK08013 oxidoreductase; Provisional
Probab=89.20 E-value=1.5 Score=41.06 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+.+. |++|+.+++|++|+.++++ + .|++ +|++++||.||-|...+.. .+.+
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENE--A-FLTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--E-EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 445677776664 7899999999999887753 4 4555 7889999999999998753 4444
No 196
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.11 E-value=1.5 Score=40.51 Aligned_cols=59 Identities=5% Similarity=0.134 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+++.+ .+++.+++|++|..++++ + .|.+++++++||.||.|-..+.. ++.+
T Consensus 106 L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~v~~~~~~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 106 FKKILLSKITNNPLITLIDNNQYQEVISHNDY--S-IIKFDDKQIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--E-EEEEcCCEEeeCEEEEeCCCCchhHHhc
Confidence 5566777777665 899999999999987753 5 46666559999999999998753 4444
No 197
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=89.10 E-value=1.5 Score=41.12 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+.+.|.+.+.+ .|++|+++++|++|+.++++ + .|++ +|++++||.||.|...+. +.+.+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE--A-WLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--E-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 44556666655 47899999999999887643 4 4665 678999999999999865 34444
No 198
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.99 E-value=2 Score=42.42 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHcC----cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 161 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 161 ~~~l~~~l~~~l~~~G----~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+..+...|.+.+.+.+ ++|..++.|+++..+++ |+|.||.. +++ .+.|+.||+||....
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 4446677777665443 67899999999998654 67888875 233 478999999998754
No 199
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=88.88 E-value=1.5 Score=43.07 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+...+.+.+++. |+++. ...|.++..+++ +++.+|.+ +|..+.|+.||+|+.+..
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 445566667666 56775 557888877633 45778887 567899999999999885
No 200
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=88.85 E-value=1.7 Score=40.44 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+.+.|++++ +++|..+..+++ + .+.|++ +|++++|+.||.|++...
T Consensus 87 l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 87 LHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 55677777777888885 668999887633 2 345666 566899999999999875
No 201
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.82 E-value=1.5 Score=40.74 Aligned_cols=54 Identities=19% Similarity=0.042 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+.+.|+.++.+++|.+|+.++++ + .|++ +|++++||.||.|...+.
T Consensus 113 l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 113 LNRALEARVAELPNITRFGDEAESVRPREDE--V-TVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHhcCCCcEEECCeeEEEEEcCCe--E-EEEECCCCEEEEeEEEEecCCCc
Confidence 5567777777766555899999999987753 5 4665 577899999999998864
No 202
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.80 E-value=1.6 Score=40.57 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+.+.|.+.+.+ .|++|+.+++|++|..++++ + .|++ +|.++++|.||.|...+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS--V-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--E-EEEECCCCEEEeCEEEEecCCCh
Confidence 34556666655 47899999999999877642 4 4666 667899999999998874
No 203
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=88.75 E-value=1.7 Score=41.28 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe--EEecCEEEEccCh
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGI 218 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VV~a~p~ 218 (355)
...-+.+.+.+.+++.|.+++++++|++++..+++ + .+.+ +|+ ++++|.|++|+.-
T Consensus 212 ~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v-~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 212 EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--V-LVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--E-EEEEecCCCCEEEeeEEEEccCC
Confidence 44447788888898888999999999999987752 4 4655 444 7899999999974
No 204
>PRK09077 L-aspartate oxidase; Provisional
Probab=88.70 E-value=2.4 Score=41.45 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHHHHc-CcEEEcCceeeEEEecC----CCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 158 GTLREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 158 gg~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~----~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+..+..+...|.+.+.+. |++|..+++|.++..++ ++++|.+|.. +|+ .+.|+.||+|+....
T Consensus 134 ~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 134 DATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 334444667787777654 79999999999998753 1256888864 243 578999999998754
No 205
>PTZ00052 thioredoxin reductase; Provisional
Probab=88.64 E-value=1.7 Score=42.05 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|+++++++.|.+|...++ .+ .|.+ +|+++.+|.||+++.-.
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~--~~-~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKMDD--KI-KVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEcCC--eE-EEEECCCCEEEcCEEEEeeCCC
Confidence 556788888899999999999999987653 24 3554 67889999999998754
No 206
>PTZ00058 glutathione reductase; Provisional
Probab=88.36 E-value=1.9 Score=42.23 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|.+|..+++ +.+. +.. + ++++++|.||+|+.-.
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~-v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKE-KNLT-IYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEE-EEECCCCEEEECCEEEECcCCC
Confidence 556777888889999999999999987543 2242 333 4 4579999999998643
No 207
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=88.35 E-value=1.3 Score=40.98 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=36.2
Q ss_pred HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+++.|++++++++|++|..++ . .|.++++++.+|.+|+||...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCC
Confidence 33566799999999999998764 2 355688899999999999864
No 208
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.19 E-value=2.3 Score=40.80 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEec-CCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYD-EERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~-~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|++|..+ ++ + +..+.+ +| +++++|.||+|+...
T Consensus 223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~-~-~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKDG-G-VLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHhcCCEEEeCcEEEEEEEecCC-C-EEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 5566778888899999999999999862 32 2 433433 55 479999999998764
No 209
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.14 E-value=1.6 Score=41.67 Aligned_cols=53 Identities=17% Similarity=-0.058 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCcE--EEcCceeeEEEecCCCCeEEEEEe-C-C-e--EEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVC-G-K-E--TYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~--i~l~~~V~~I~~~~~~~~v~~v~~-~-g-~--~~~ad~VV~a~p~~ 219 (355)
+.+-|.+.++..|.+ |+++++|++|...++ .|.|++ + + . +..+|+||+|+...
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~---~w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVDG---KWRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecCC---eEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 556677777777876 999999999998653 345665 2 2 2 46799999999854
No 210
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.36 E-value=2.6 Score=40.32 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----C--CeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|++|+.++++ + .+.+ + ++++++|.||+|+...
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGADG--V-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCCe--E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 5567788888999999999999999876532 3 2322 2 3579999999998754
No 211
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=87.12 E-value=2.9 Score=40.88 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+-+.|.+.+.+. |++|+.+++|++|++++++ | .|++ +| ++++||.||-|...+.. .+.+
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v-~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--V-TVTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--E-EEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 334566666654 8999999999999998753 5 3544 45 47999999999998754 4544
No 212
>PRK06996 hypothetical protein; Provisional
Probab=86.90 E-value=2.3 Score=39.75 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccCh--hhHHHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGI--STLQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~--~~~~~l~ 225 (355)
+.+.|.+.+++.|++++.+++|++|+.++++ + .+++ ++ ++++||.||-|... ....+.+
T Consensus 117 l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v-~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 117 LVAALARAVRGTPVRWLTSTTAHAPAQDADG--V-TLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--E-EEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 5577888888889999999999999887753 4 4555 22 58999999999874 3334443
No 213
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.86 E-value=2.6 Score=40.56 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|.+|...++ .+ .|+. ++ +++++|.||+|+...
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~--~~-~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIEA--KV-KVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCC--eE-EEEEecCCcceEEEeCEEEEEecCC
Confidence 556777888899999999999999987653 23 3544 43 479999999998753
No 214
>PRK05868 hypothetical protein; Validated
Probab=86.86 E-value=2.3 Score=39.41 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=39.5
Q ss_pred HcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhhc
Q 018455 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIKN 227 (355)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~~~ 227 (355)
..|.+|+++++|++|+.+++ .| .|++ +|++++||.||-|-..+. ..+.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~--~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~~~ 168 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGD--SV-RVTFERAAAREFDLVIGADGLHSNVRRLVFG 168 (372)
T ss_pred cCCcEEEeCCEEEEEEecCC--eE-EEEECCCCeEEeCEEEECCCCCchHHHHhcC
Confidence 35789999999999987664 25 4665 678999999999999875 4565543
No 215
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=86.80 E-value=3.2 Score=41.16 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...+...+++.+++|..+++|+++..++++ |+|.||.. +|+ ++.|+.||+||....
T Consensus 128 ~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 128 YKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4444555566667899999999999986531 46888864 343 578999999999864
No 216
>PLN02546 glutathione reductase
Probab=86.68 E-value=3.4 Score=40.50 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeE-EecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~-~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++|++++.|.+|..+++ +.+ .+.+++++ ..+|.||+++...
T Consensus 295 ~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 295 VRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeeccc
Confidence 455677778889999999999999987544 333 45555444 4589999998754
No 217
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=86.28 E-value=2.4 Score=39.76 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a~p~~~~ 221 (355)
+.+.|.+.+.+. |++|+.+++|++|+.++++ + .|++ ++ .+++||.||.|...+..
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~-~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--A-TVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--e-EEEEccCCcceEEeeeEEEEeCCCCch
Confidence 556677777664 6899999999999887643 4 3554 23 36999999999998753
No 218
>PRK10262 thioredoxin reductase; Provisional
Probab=86.12 E-value=2.1 Score=38.64 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C----C--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~----g--~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.+++.|+++++++.|++|..+++ .+.+|++ + + +++++|.||+++....
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCc--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 445666777788999999999999986542 2445553 1 1 3799999999987643
No 219
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=86.01 E-value=3.8 Score=37.55 Aligned_cols=60 Identities=17% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~ 219 (355)
++|..=+..+..+.|+.+|.+++|+++|..+..++|| .| .|.+ ++ ++++||.+.+++.-.
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v-~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG-PV-EIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCC-ce-EEEEEecCCCceeEEEeeEEEEEccCc
Confidence 4554437778888899999999999999999999884 45 3544 23 589999999988643
No 220
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=85.85 E-value=2 Score=39.58 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.++++|++++++++|.+|. + + .|.+ +|+++++|.||++++..
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~---~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGP--D--G---ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEc--C--C---eEEeCCCCEEecCEEEEccCCC
Confidence 45667777889999999999999885 2 2 2444 67899999999999854
No 221
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=85.82 E-value=2.2 Score=40.02 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+. +..|+++++|++|+.++++ + .|++ +|++++||.||.|...+.. .+.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAEE--V-QVLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCCc--E-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 4444544442 4678999999999987753 4 4655 6788999999999998864 4444
No 222
>PRK02106 choline dehydrogenase; Validated
Probab=85.69 E-value=1.5 Score=43.03 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=39.7
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe---EEecCEEEEccChhhHHHhh
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~---~~~ad~VV~a~p~~~~~~l~ 225 (355)
++.+.+|++++.|++|..++ +++++|++ .++ .+.++.||+|..+-...+|+
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LL 267 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLL 267 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHH
Confidence 34568999999999999975 56888876 222 45789999999987666655
No 223
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=85.46 E-value=2.9 Score=39.82 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------CC-----------eEEecCEEEEccCh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------GK-----------ETYSAGAVVLAVGI 218 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~g-----------~~~~ad~VV~a~p~ 218 (355)
..+.+++.|++|++++.+.+|..+++ |++.+|.+ +| .++++|.||+|+..
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 33557788999999999999986544 55655543 12 26899999999875
No 224
>PRK06126 hypothetical protein; Provisional
Probab=85.44 E-value=3.6 Score=40.28 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=42.0
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+++ .|++|+++++|++|+.++++ |. +++ +|+ +++||.||.|...+.. .+.+
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADG--VT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCe--EE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 44456666655 47899999999999988753 53 332 343 7899999999998763 4443
No 225
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=85.34 E-value=0.26 Score=46.62 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC----CeEEecCEEEEccChhhHHHhhhc
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIKN 227 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----g~~~~ad~VV~a~p~~~~~~l~~~ 227 (355)
+.+.+.+.|++|++++.|.++..++ ++|++|.+. ..+++|+.||=|+.-..+..+...
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 3444566799999999999999986 568888772 358999999999986666665544
No 226
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=84.75 E-value=3.9 Score=38.76 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcC---cEEEcCceeeEEEec-----CCCCeEEEEEe-CCeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G---~~i~l~~~V~~I~~~-----~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+++.+ ++|+.+++|.+|+.+ +++..+ .|++ +|++++||.||.|-..+.. .+.+
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 4466777777664 799999999999863 111224 4655 6789999999999998764 4443
No 227
>PLN02661 Putative thiazole synthesis
Probab=84.44 E-value=4.8 Score=36.82 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHH-HcCcEEEcCceeeEEEecCCCCeEEEEEe-------C--C------eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-------G--K------ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------~--g------~~~~ad~VV~a~p~~ 219 (355)
+...|.+.+. ..|++|+.++.|.++..++ +++.||.+ + + ..++|+.||+||...
T Consensus 174 ~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 174 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 3456666544 4689999999999999876 56778774 1 1 268999999999843
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=84.43 E-value=2.7 Score=39.90 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++++++++|++|.. . .|++ +|+++++|.||+|++..
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~----~---~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAING----N---EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEeC----C---EEEECCCCEEEeCEEEECcCCC
Confidence 556777888899999999999999962 1 2433 67789999999998854
No 229
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=84.16 E-value=4.5 Score=37.68 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEe-cCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~-~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+.+.|.+.+.+.|++|+++++|++|+. ++++ + .|+. +|+ +++||.||-|-..+. +.+.+
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~ 169 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDR--P-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASI 169 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--e-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhc
Confidence 445666666678999999999999987 4432 3 3544 553 689999999998875 34544
No 230
>PRK07236 hypothetical protein; Provisional
Probab=84.04 E-value=3.6 Score=38.19 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=34.4
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
+.+|+++++|++|+.++++ + .|++ +|++++||.||.|-..+..
T Consensus 112 ~~~i~~~~~v~~i~~~~~~--v-~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDR--V-TARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CcEEEcCCEEEEEEecCCe--E-EEEECCCCEEEeCEEEECCCCCch
Confidence 4689999999999987642 5 3555 6789999999999887653
No 231
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=83.73 E-value=3.7 Score=39.40 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe------CC---------eEEecCEEEEccCh
Q 018455 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GK---------ETYSAGAVVLAVGI 218 (355)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------~g---------~~~~ad~VV~a~p~ 218 (355)
.+.+.+.|+++++++.+.+|..++ |++.+|.+ +| ++++||.||+|+..
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 345667899999999999997544 56766643 12 57899999999974
No 232
>PRK07846 mycothione reductase; Reviewed
Probab=83.26 E-value=4.3 Score=38.72 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+. .+.|.+++++++|++|+.+++ .+ .|.+ +|+++++|.||+|+...
T Consensus 209 ~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~--~v-~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 209 ISERFTEL-ASKRWDVRLGRNVVGVSQDGS--GV-TLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred HHHHHHHH-HhcCeEEEeCCEEEEEEEcCC--EE-EEEECCCcEeecCEEEEEECCc
Confidence 44444433 356899999999999987653 34 3555 57789999999998654
No 233
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=83.06 E-value=2.8 Score=43.03 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
.+.++++|++++++++|++|..++ . .|.+ +|+++.+|.+|+||...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~~--k---~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTDQ--K---QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECCC--C---EEEECCCcEeeCCEEEECCCCC
Confidence 344677899999999999998765 2 2444 67789999999999864
No 234
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=82.73 E-value=4.4 Score=38.66 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--------------------CCeEEecCEEEEccChh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--------------------GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--------------------~g~~~~ad~VV~a~p~~ 219 (355)
..+.+++.|++|++++.|.+|..+++ ++.+|++ ++++++||.||+|+...
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDEG--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecCC--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 34567788999999999999986553 2334432 12478999999998753
No 235
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=82.35 E-value=3.3 Score=38.65 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=34.3
Q ss_pred HHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.|+++++++.|..|..++ . .|.+ +|+++.+|++|+||...
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~--~---~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDT--R---ELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCC--C---EEEECCCCEEEcCEEEEccCCC
Confidence 456789999999999998765 2 2444 67889999999999865
No 236
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=82.32 E-value=5.4 Score=38.06 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+ +.|.+|++++.|++|..+++ .+ .|.+ +|+++++|.||+|++..
T Consensus 212 ~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~--~v-~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 212 ISDRFTEIA-KKKWDIRLGRNVTAVEQDGD--GV-TLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHHHH-hcCCEEEeCCEEEEEEEcCC--eE-EEEEcCCCEEEcCEEEEeeccC
Confidence 444444433 46899999999999987653 24 3555 57789999999999643
No 237
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.20 E-value=2.9 Score=37.31 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHc------CcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhhH
Q 018455 164 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 221 (355)
Q Consensus 164 l~~~l~~~l~~~------G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~~ 221 (355)
|+.+|.+.+++. -+.|.++++|..|..++ |+|.+|.. +|+ .+.++.||+|+..-.+
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 556666665432 25899999999999666 67989876 453 5789999999987654
No 238
>PRK06475 salicylate hydroxylase; Provisional
Probab=81.98 E-value=6.3 Score=36.82 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe---C-CeEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-g~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+.+ .|++|+++++|+++..++++ + .|++ + +++++||.||-|-..+.. .+.+
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--I-TATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--e-EEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 55667777655 47899999999999987643 4 3443 3 357999999999998864 5554
No 239
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=81.97 E-value=6.3 Score=38.63 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe---CCe-EEecCEEEEccChhh-HHHhhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~-~~~ad~VV~a~p~~~-~~~l~~ 226 (355)
+-+.|.+.+++. |++|+++++|.+++.++++ + .+++ +|+ +++||.||.|...+. ..+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--v-~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDG--V-TLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE--E-EEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 334566666664 6899999999999988753 4 2333 343 789999999998875 445543
No 240
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=81.73 E-value=5.5 Score=38.83 Aligned_cols=57 Identities=19% Similarity=0.074 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcC--cEEEcCceeeEEEecCCC--CeEEEEEe--CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEER--CCISDVVC--GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~--~~v~~v~~--~g~--~~~ad~VV~a~p~~~ 220 (355)
+.+-|...++..+ ..|++||+|.+|+..+|. ...|.|++ +|+ +..+|+||+|+....
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 3344444455444 379999999999986541 01456766 343 457999999998755
No 241
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=81.70 E-value=5.9 Score=37.96 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEccCh
Q 018455 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGI 218 (355)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VV~a~p~ 218 (355)
.+.+++.|+++++++.+.+|..+++ |++.+|++ + | .+++||.||+|+..
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 3446678999999999999986544 45655543 1 1 36899999999874
No 242
>PRK12831 putative oxidoreductase; Provisional
Probab=81.64 E-value=4.9 Score=38.48 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-------------------CC--eEEecCEEEEccChh
Q 018455 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~g--~~~~ad~VV~a~p~~ 219 (355)
.+++.|++|++++.+.+|..+++ |++.+|.+ +| .+++||.||+|+...
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~ 395 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS 395 (464)
T ss_pred HHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence 35668999999999999986554 55655543 12 268999999999754
No 243
>PRK06753 hypothetical protein; Provisional
Probab=80.66 E-value=5.5 Score=36.71 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=36.2
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 018455 176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (355)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~-~~~l~ 225 (355)
+.+|+++++|++|+.+++ .+ .|++ +|+++++|.||-|...+. +++.+
T Consensus 110 ~~~i~~~~~v~~i~~~~~--~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 110 EDAIFTGKEVTKIENETD--KV-TIHFADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred CceEEECCEEEEEEecCC--cE-EEEECCCCEEecCEEEECCCcchHHHHHh
Confidence 468999999999997764 35 4665 678899999999999875 34444
No 244
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=80.50 E-value=8.7 Score=32.51 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VV~a~p~~~ 220 (355)
++..|+...-+.|.+|..++.|+.|...++ .+|.||++| --+++|+.||-||..+.
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 344566666677999999999999999875 258888763 23789999999997764
No 245
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.41 E-value=5.7 Score=38.61 Aligned_cols=50 Identities=12% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccChh
Q 018455 168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VV~a~p~~ 219 (355)
+.+.+++ .|++|++++.|++|..++ +++.+|.+ + | ++++||.||+++...
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 4555665 599999999999998654 44655654 2 2 478999999998754
No 246
>PRK11445 putative oxidoreductase; Provisional
Probab=80.34 E-value=8 Score=35.42 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=35.2
Q ss_pred HcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhhH
Q 018455 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL 221 (355)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~~ 221 (355)
+.|++|+.++.|++|+.++++ + .|+. +|+ +++||.||.|......
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~--~-~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG--Y-HVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE--E-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 468999999999999987753 3 4543 453 6899999999998753
No 247
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=79.89 E-value=5.7 Score=36.87 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEE---EEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD---VVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~---v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|+++++++.|.+|+..++ .+.. +..+++.+++|.|+++++..
T Consensus 180 ~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 180 VAEELAELLEKYGVELLLGTKVVGVEGKGN--TLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHHHHHCCcEEEeCCceEEEEcccC--cceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 677888889999999999999999998763 2322 33478899999999988653
No 248
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=79.87 E-value=3.8 Score=37.43 Aligned_cols=44 Identities=32% Similarity=0.272 Sum_probs=29.7
Q ss_pred cCcEEEcCceeeEEEecCCCC-eEEEEEe-----CCeEEecCEEEEccCh
Q 018455 175 RGCEFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGI 218 (355)
Q Consensus 175 ~G~~i~l~~~V~~I~~~~~~~-~v~~v~~-----~g~~~~ad~VV~a~p~ 218 (355)
.+.+|+.+++|++|...++++ ..+.|.+ +++++.|++||+++..
T Consensus 108 ~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 108 LDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp GTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred CCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 344599999999999876422 3456766 3468999999999873
No 249
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=78.70 E-value=7.3 Score=39.14 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEccCh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGI 218 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VV~a~p~ 218 (355)
..+.+++.|+++++++.+.+|..+++ |++.+|.+ + | .++++|.||+|+..
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 44557778999999999999986544 55666653 1 1 25899999999874
No 250
>PRK07538 hypothetical protein; Provisional
Probab=78.61 E-value=8.8 Score=36.02 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH-cC-cEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChhhH-HHhh
Q 018455 164 IFEPWMDSMRT-RG-CEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGISTL-QELI 225 (355)
Q Consensus 164 l~~~l~~~l~~-~G-~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VV~a~p~~~~-~~l~ 225 (355)
+.+.|.+.+.+ .| .+|+++++|++++.++++ .+..+.. +| ++++||.||-|...+.. .+.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 44556666544 46 479999999999987753 2222222 12 48999999999998754 4444
No 251
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.21 E-value=6.8 Score=37.16 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEe--cCEEEEccChh
Q 018455 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYS--AGAVVLAVGIS 219 (355)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~--ad~VV~a~p~~ 219 (355)
.+.+++.|+++++++.|.+|..++ ..+ .+.. +|++++ +|++|+|+...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~--~~v-~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKN--KTI-TVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCC--CEE-EEEECCCCCEEEecCCEEEECCCCC
Confidence 345667899999999999998876 324 3443 355666 99999999864
No 252
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=77.62 E-value=14 Score=31.32 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC-------C-----eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-------g-----~~~~ad~VV~a~p~~ 219 (355)
+...|+...-+.|++|.-.+.|+.+...++ ++|.+|++| | -+++|+.||-||..+
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 334555555558999999999999999885 579898863 2 379999999999654
No 253
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=77.17 E-value=10 Score=34.01 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
.+.-+.+.+.+.++..|.++.. ..|.+++..++ ...|.++.++++|+.||+|+....
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~---~F~v~t~~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG---PFKVKTDKGTYEAKAVIIATGAGA 115 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc---eEEEEECCCeEEEeEEEECcCCcc
Confidence 3333667777777778888777 77888877652 346777655599999999998865
No 254
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=76.60 E-value=10 Score=36.14 Aligned_cols=54 Identities=24% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcC--cEEEcCceeeEEEecCCCCeEEEEEeC-CeE--EecCEEEEccChh
Q 018455 165 FEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGIS 219 (355)
Q Consensus 165 ~~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~--~~ad~VV~a~p~~ 219 (355)
-+-+...++..+ -+|+.+++|+.+..+++ +..+.|+++ |.+ +.||.||+|+...
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 345666666655 38899999999888876 346778773 433 5699999999883
No 255
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=76.05 E-value=5.7 Score=32.71 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.1
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeE----EEE---Ee-CCeEEecCEEEEccChh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCI----SDV---VC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v----~~v---~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+...+.+++++++|.+|.... +++ ..+ .. ++.++.+|.||+|+...
T Consensus 64 ~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 64 LVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred cccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCccc
Confidence 4444566789999999999998876 321 112 22 35689999999999865
No 256
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=75.91 E-value=4.8 Score=36.99 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
.+.+.+++.|++++.+ +|++|..++ . .|.+ +|+++.+|.+|+|+...
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~--~---~V~~~~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDR--R---KVLLANRPPLSYDVLSLDVGST 106 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEeccc--C---EEEECCCCcccccEEEEccCCC
Confidence 3445566779998775 799998765 2 2444 67789999999999754
No 257
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.78 E-value=8.6 Score=34.87 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=46.8
Q ss_pred CCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
.+..+.+.+.+.+.++..|.++|.++.++++....+|... .++..|....+|.++.|+.-.
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCC
Confidence 3455556777888888899999999999999998874322 345567666799999999753
No 258
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=75.77 E-value=8 Score=36.47 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=33.8
Q ss_pred HHHcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEe--cCEEEEccChh
Q 018455 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 219 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g~~~~--ad~VV~a~p~~ 219 (355)
+.+.|+++++++.|++|..++ +.+ .+..+ ++++. +|+||+||...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~--~~v-~~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDER--QTV-VVRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCC--CEE-EEEECCCCCEEecCCCEEEECCCCC
Confidence 467799999999999998765 334 34432 45777 99999999863
No 259
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=5.9 Score=33.50 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=45.5
Q ss_pred EecCCcchHHHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 018455 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (355)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~ 220 (355)
+|.|=.+.-+.+.+.+..++.|.+|... .|.++..+.. -..+.++.+.+.||.||+|+.+..
T Consensus 63 FPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ssk---pF~l~td~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 63 FPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSK---PFKLWTDARPVTADAVILATGASA 124 (322)
T ss_pred CCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCC---CeEEEecCCceeeeeEEEecccce
Confidence 4555444446788888888889988554 5788887652 345677888999999999998754
No 260
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=75.21 E-value=3.2 Score=41.21 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=41.7
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
.|.+.+++.|.++++++.+++|..+ +++.+|.. +|..+.||-||.|+...
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccc
Confidence 4667788999999999999999874 34678887 78899999999999653
No 261
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=74.82 E-value=7.3 Score=40.35 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=35.3
Q ss_pred HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 018455 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (355)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~ 219 (355)
+.+++.|++++++++|.+|..+. . .|.+ +|+++.+|.+|+||...
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~--~---~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQE--K---VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCC--c---EEEECCCcEEECCEEEECCCCC
Confidence 34566899999999999998754 1 2444 67789999999999864
No 262
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=74.25 E-value=12 Score=32.92 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=37.2
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~ 219 (355)
..+.+.+++. |+++++++.|.+|..++ ++..+.+ +| +++++|.||++++..
T Consensus 180 ~~~~~~l~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 180 KILLDRLRKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred HHHHHHHHhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 4455667777 99999999999998643 2444543 23 579999999999854
No 263
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=73.74 E-value=7.9 Score=35.37 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=27.1
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccC
Q 018455 176 GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVG 217 (355)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p 217 (355)
..+|+.++.|++++.+++| ++ .+.+ .| .++++|.||+||.
T Consensus 293 ~~~l~~~~~v~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDG-GV-RLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp -SEEETTEEEEEEEEES-S-SE-EEEEEETTT--EEEEEESEEEE---
T ss_pred CeEEeCCCEEEEEEECCCC-EE-EEEEEECCCCCeEEEecCEEEEcCC
Confidence 3689999999999998853 24 4554 12 4789999999986
No 264
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=73.67 E-value=13 Score=34.49 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C------C--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~------g--~~~~ad~VV~a~p~~~ 220 (355)
+-+.|.+.+.+.|++|+.+ .|++|..+++ .+ .|++ + | .+++||.||.|...+.
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~--~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDRD--GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcCC--eE-EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 4456777777789999755 6999987764 24 3543 2 2 4789999999999764
No 265
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=73.17 E-value=13 Score=36.47 Aligned_cols=52 Identities=25% Similarity=0.426 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++.|++++ +++|++|..+++ ...|.++++.+.++.||+|+...
T Consensus 62 l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~---~~~V~~~~g~~~a~~lVlATGa~ 113 (555)
T TIGR03143 62 LMQEMRQQAQDFGVKFL-QAEVLDVDFDGD---IKTIKTARGDYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHcCCEEe-ccEEEEEEecCC---EEEEEecCCEEEEeEEEECCCCc
Confidence 55667777778899985 788999987652 33566655578999999999864
No 266
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.25 E-value=16 Score=35.04 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+++. .+|++++.|++|+.+++ .+ .+.+ + + +++++|.||+|+...
T Consensus 217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~--~~-~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 217 IVKVFTKRIKKQ-FNIMLETKVTAVEAKED--GI-YVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred HHHHHHHHHhhc-eEEEcCCEEEEEEEcCC--EE-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence 556677777777 99999999999987653 24 3543 2 2 469999999998754
No 267
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=71.32 E-value=13 Score=38.16 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=36.0
Q ss_pred HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEccChh
Q 018455 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VV~a~p~~ 219 (355)
+.+++.|++|++++.+.+|..+++ |++.+|.+ + | .+++||.||+|+...
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 346678999999999999987554 56666643 1 1 258999999998753
No 268
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=70.92 E-value=15 Score=35.02 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=49.4
Q ss_pred eEEecCCcchHHHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe--C-C--eEEecCEEEEccCh
Q 018455 153 LVWCRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVGI 218 (355)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g--~~~~ad~VV~a~p~ 218 (355)
+....+..+..+...|.+.+++ .+.+|.-++.+.+|..+++. .+.||.+ + + .++.++.||+|+..
T Consensus 124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-GVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc-eEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 3445666677677888888765 68999999999999998841 3547766 2 3 47889999999975
No 269
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.91 E-value=13 Score=37.22 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHcCcEEEcCceeeEEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEccCh
Q 018455 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGI 218 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VV~a~p~ 218 (355)
+++.|+++++++.+.+|..+++ |+|.+|.+ + | .+++||.||+|+..
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 4567999999999999986554 56665532 1 1 26899999999874
No 270
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=70.41 E-value=24 Score=35.40 Aligned_cols=62 Identities=29% Similarity=0.277 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCc--EEEcCceeeEEEecCCC-CeEEEEEe-------CC--eEEecCEEEEccChhhH-HHhhh
Q 018455 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGISTL-QELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~-~~v~~v~~-------~g--~~~~ad~VV~a~p~~~~-~~l~~ 226 (355)
+-+.|.+.+.+.|+ +++.+++|+++++++++ ..| .|++ +| ++++||.||-|-..+.. ++.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 44567777777664 78999999999987532 124 3444 24 58999999999998754 55553
No 271
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.03 E-value=19 Score=37.75 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHc----CcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~----G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...|.+.+.+. ++++..++.+.++..++ |+|.||.. +|+ .+.|+.||+||....
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 556777776654 45666666666887654 67888764 354 578999999998753
No 272
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=69.98 E-value=17 Score=34.65 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C--CeEEecCEEEEccCh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGI 218 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g~~~~ad~VV~a~p~ 218 (355)
+.+.+.+.+++. ++|+++++|.+|+.+++ ..+ .++. + ++++++|.||+|+..
T Consensus 212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v-~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 212 VSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKV-EELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceE-EEEEcCCceEEEEeCEEEEccCC
Confidence 455666778888 99999999999986542 123 2322 3 357999999999765
No 273
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=69.78 E-value=11 Score=33.99 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhhHHHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~~~~~l~ 225 (355)
+-+.|.+.+++.|+-+..+-+|.+....+ ++|+.|-+ +. .-++||.+|+|+..---+.|.
T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLv 322 (421)
T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLV 322 (421)
T ss_pred HHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccch
Confidence 56788888999999999999999999988 56887866 43 357899999999876555554
No 274
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=68.66 E-value=6.9 Score=37.67 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHh
Q 018455 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 224 (355)
Q Consensus 166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~~~l 224 (355)
..+.+.++.. +.+|+ ...|..|..+++ .+|++|.+ +|..+.|+.||+||..-.-.++
T Consensus 104 ~~mk~~le~~~NL~l~-q~~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 104 RAMKNELENQPNLHLL-QGEVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHHHhcCCCceeh-HhhhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 3444445543 45553 445677777663 35888988 6889999999999986554433
No 275
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=68.55 E-value=21 Score=37.89 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-----CCeEEecCEEEEccChhhHHHhh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----GKETYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-----~g~~~~ad~VV~a~p~~~~~~l~ 225 (355)
..+.+.+++.|++|++++.|.+|.-++ ++.+|++ ++++++||.|+++....--..|.
T Consensus 355 ~~l~~~L~~~GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~ 416 (985)
T TIGR01372 355 PEARAEARELGIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLF 416 (985)
T ss_pred HHHHHHHHHcCCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEcCCcCchhHHH
Confidence 456677888999999999999997543 2444543 34689999999998754433343
No 276
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=68.45 E-value=14 Score=37.11 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=34.3
Q ss_pred cCc-EEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 018455 175 RGC-EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (355)
Q Consensus 175 ~G~-~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~~ 221 (355)
.+. .|+.+++|++|+.+++ .|. |++ +|+++++|.||.|...+..
T Consensus 204 lg~~~i~~g~~V~~I~~~~d--~Vt-V~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSGD--KVT-VVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred CCCCEEEcCCEEEEEEEeCC--EEE-EEECCCCEEEcCEEEECCCCCcH
Confidence 344 4789999999998764 364 655 6778999999999998763
No 277
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=68.32 E-value=22 Score=33.06 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEe-cCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~-~~~~~~v~~v~~--~g~--~~~ad~VV~a~p~~~-~~~l~~ 226 (355)
+...|.+.+.+.|+++++++++.++.. ++++ + .|++ +|+ +++||.||-|-..+. ..+.++
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~--~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGDR--P-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc--c-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 445677777777899999999988865 3332 3 3444 664 689999999998875 445443
No 278
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=67.89 E-value=22 Score=35.77 Aligned_cols=55 Identities=4% Similarity=-0.031 Sum_probs=37.4
Q ss_pred HHHHHHHHH-HHcCcEEEcCceeeEEEecCCCCeEEEEEe-C---C------------eEEecCEEEEccChh
Q 018455 164 IFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K------------ETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l-~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g------------~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+ ++.|++|++++.|.+|..++++..+ .+.+ + + +++++|.||+|+...
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v-~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPV-IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEE-EEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 445555554 5689999999999999876532113 2332 1 1 279999999998754
No 279
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.58 E-value=15 Score=34.82 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEecCEEEEccChh
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g~--~~~ad~VV~a~p~~ 219 (355)
++.|.+++++++|.+|..++ ++| .+..+ ++ ++.+|++|+|+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~--~~v-~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER--QTV-TVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC--CEE-EEEECCCCcEEeeecCEEEECCCCC
Confidence 45689999999999998876 334 34432 23 46899999999754
No 280
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=67.29 E-value=27 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe---C-----C--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-----K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-----g--~~~~ad~VV~a~p~~~ 220 (355)
+-+.|.+.+++.|++|+.++ |.+|....+++..++|+. + | .+++|+.||.|..+..
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 44557777788899998885 777764221111334542 1 3 3789999999999865
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=66.37 E-value=17 Score=35.41 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 018455 167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 167 ~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VV~a~p~~ 219 (355)
.+.+.+.+ .|++|++++.|.+|..++ +++.+|.+ +| ++++||.|++++...
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 34555654 589999999999998654 44656654 23 368999999988764
No 282
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=66.25 E-value=13 Score=36.42 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=38.1
Q ss_pred HHHcCcEEEcCceeeEEEecCCCCeEEEEEe--C-C---e-EEecCEEEEccChhhHHHhh
Q 018455 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K---E-TYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g---~-~~~ad~VV~a~p~~~~~~l~ 225 (355)
++..+.+|++++.|++|..++ +++++|.. + + + .+.++.||++...-...+|+
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 445568999999999999998 44667755 3 2 2 24678999988876666654
No 283
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=65.90 E-value=16 Score=34.66 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
.+.+.+.+++.|+++..+ +|..+..+ .+ .|..+|+++.+|+||+||...
T Consensus 93 ~~~~~~~l~~~gV~~~~g-~~~~v~~~----~v-~v~~~g~~~~~d~lIiATGs~ 141 (446)
T TIGR01424 93 SGLYKRLLANAGVELLEG-RARLVGPN----TV-EVLQDGTTYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHHHhCCcEEEEE-EEEEecCC----EE-EEecCCeEEEcCEEEEecCCc
Confidence 344555677789999776 56655422 23 344467889999999999864
No 284
>PRK13984 putative oxidoreductase; Provisional
Probab=65.77 E-value=18 Score=36.02 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEe---------C-----------CeEEecCEEEEccChh
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC---------G-----------KETYSAGAVVLAVGIS 219 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---------~-----------g~~~~ad~VV~a~p~~ 219 (355)
.+.|++|++++.+.+|..++ +++.+|.+ + +.++++|.||+|+...
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 35799999999998887644 45655543 1 1368999999998754
No 285
>PRK10262 thioredoxin reductase; Provisional
Probab=65.18 E-value=30 Score=31.13 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+...+.+++.+ .|.+|...+ + .+.++.+.+.+.+|.||+|+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~-~~~v~~~~~~~~~d~vilAtG~~ 116 (321)
T PRK10262 65 LMERMHEHATKFETEIIFD-HINKVDLQN--R-PFRLTGDSGEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHHCCCEEEee-EEEEEEecC--C-eEEEEecCCEEEECEEEECCCCC
Confidence 4455666666677788776 577888765 2 23455444578999999999875
No 286
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.41 E-value=27 Score=31.96 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=35.5
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-------------------C--CeEEecCEEEEccChh
Q 018455 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------G--KETYSAGAVVLAVGIS 219 (355)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~--g~~~~ad~VV~a~p~~ 219 (355)
.+.+.++++|++|++++.|.+|+.++ ++..|.+ + ++++++|.||+++...
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEG---RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCC---cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 34556888999999999999987542 2333321 1 2478999999988763
No 287
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=62.36 E-value=24 Score=37.48 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.2
Q ss_pred HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe------------------CC--eEEecCEEEEccChh
Q 018455 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------------------~g--~~~~ad~VV~a~p~~ 219 (355)
+.+++.|++|++++.+.+|..+++ |+|.+|.+ .| .+++||.||+|+.-.
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 346678999999999999986544 56766643 11 268999999999743
No 288
>PLN02785 Protein HOTHEAD
Probab=62.13 E-value=26 Score=34.74 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCC--CeEEEEEe---CCeEE-------ecCEEEEccChhhHHHhh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKETY-------SAGAVVLAVGISTLQELI 225 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~---~g~~~-------~ad~VV~a~p~~~~~~l~ 225 (355)
+.......+.+|.+++.|++|..++++ +++++|.. +|++. ..+.||+++.+-...+|+
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL 295 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQML 295 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHH
Confidence 333334467899999999999997531 26889876 35432 236799888775554443
No 289
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=60.94 E-value=25 Score=33.48 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+...+++.|+++++++.+. . ++ + .|.++|+++.+|+||+||...
T Consensus 95 ~~~~~~l~~~gv~~~~g~~~~---~-~~-~---~v~v~~~~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 95 GIYQKNLEKNKVDVIFGHARF---T-KD-G---TVEVNGRDYTAPHILIATGGK 140 (450)
T ss_pred HHHHHHHHhCCCEEEEEEEEE---c-cC-C---EEEECCEEEEeCEEEEecCCC
Confidence 345555677899999998652 2 22 2 244577889999999999754
No 290
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=60.84 E-value=14 Score=36.94 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=36.5
Q ss_pred HHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
..+++|++++++.+|.+|...+. .|++ +|.++.+|..|+||....
T Consensus 68 wy~~~~i~L~~~~~v~~idr~~k-----~V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 68 WYEENGITLYTGEKVIQIDRANK-----VVTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred hHHHcCcEEEcCCeeEEeccCcc-----eEEccCCcEeecceeEEecCccc
Confidence 35788999999999999998751 3555 688999999999987543
No 291
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=57.49 E-value=10 Score=33.98 Aligned_cols=110 Identities=7% Similarity=-0.027 Sum_probs=68.2
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhcCC--CcceEEecCCcchHHHHHHHHHHHH
Q 018455 97 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMDSMRT 174 (355)
Q Consensus 97 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~--~~~~~~~~gg~~~~l~~~l~~~l~~ 174 (355)
++.+=.-+. .++.+++.|+.+...--||.+|+++.+.....+=-.+-..++- ..=.+.|++|.-. .+.+.+..
T Consensus 133 ~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~----~~~kMl~h 207 (374)
T COG0562 133 NLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTA----MFEKMLDH 207 (374)
T ss_pred hhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHH----HHHHHhcC
Confidence 344444443 6688899999999999999999999997654321100000000 0112567888543 34455666
Q ss_pred cCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 018455 175 RGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (355)
Q Consensus 175 ~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~~~ 223 (355)
...+|+|||.-..+..... .+.+..||-+-|.+.+-.
T Consensus 208 p~I~V~Lntd~~~~~~~~~------------~~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 208 PNIDVRLNTDFFDVKDQLR------------AIPFAPVVYTGPIDAYFD 244 (374)
T ss_pred CCceEEecCcHHHHhhhhc------------ccCCCceEEecchHhhhc
Confidence 6789999999877765431 133457888777776543
No 292
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=57.31 E-value=47 Score=31.67 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-------C--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-------K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-------g--~~~~ad~VV~a~p~~~ 220 (355)
+-+.|.+.+++.|++++.+ .|++|..+++++..+.|++ + | .+++||.||-|..++.
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS 199 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch
Confidence 4456777777889999876 5888875321111223443 1 3 4789999999999865
No 293
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=55.90 E-value=40 Score=35.57 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHcCcEEEcCceeeEEEecCCCCeEEEEEe------------------CC--eEEecCEEEEccChh
Q 018455 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------------------~g--~~~~ad~VV~a~p~~ 219 (355)
+.+.|++++.++.+.+|..+++++++.++.+ .| .+++||.||+|+.-.
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 3457999999999999986643245655432 12 368999999998743
No 294
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=55.12 E-value=25 Score=32.54 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=28.8
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+..|+++++|.++ +++ .| .+ .+|++++||.||-|.+..
T Consensus 100 ~~~i~~~~~V~~v--~~~--~v-~l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DAD--GV-DL-APGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eCC--EE-EE-CCCCEEEeeEEEECCCCC
Confidence 4348899999998 332 13 23 578899999999999876
No 295
>PLN02985 squalene monooxygenase
Probab=54.72 E-value=65 Score=31.35 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh-HHHhhh
Q 018455 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 226 (355)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VV~a~p~~~-~~~l~~ 226 (355)
+.+.|.+.+.+. +++++.+ +|.++..++ +.+.+|++ +|+ ++.||.||.|..... +.+.+.
T Consensus 149 l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 149 FVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 556677777665 6888765 577776655 44556764 454 457899999999875 344443
No 296
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=53.40 E-value=27 Score=33.10 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 018455 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~ 218 (355)
+..++.|.++++++.|+++...+. .|.+ +|+++.++..|+||..
T Consensus 135 e~Yke~gIe~~~~t~v~~~D~~~K-----~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 135 EFYKEKGIELILGTSVVKADLASK-----TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hhHhhcCceEEEcceeEEeecccc-----EEEeCCCceeecceEEEeecC
Confidence 346788999999999999998762 3555 7999999999999987
No 297
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.20 E-value=26 Score=32.52 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=32.5
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEe----C--CeEEecCEEEEccChh
Q 018455 176 GCEFLDGRRVTDFIYDEERCCISDVVC----G--KETYSAGAVVLAVGIS 219 (355)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~----~--g~~~~ad~VV~a~p~~ 219 (355)
.++++.++.|..++-+++ |++ .+.+ . .++++.|.||+||.-.
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCC-ceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 357889999999999887 443 4554 1 2588999999999876
No 298
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=52.11 E-value=56 Score=32.22 Aligned_cols=48 Identities=27% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-----------------CC--eEEecCEEEEccChhh
Q 018455 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-----------------~g--~~~~ad~VV~a~p~~~ 220 (355)
.+.+.|++|++++.+.+|..+++ +.+ +|.+ .| .++++|.||+|+....
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 34567999999999999987654 333 4321 12 3789999999998543
No 299
>PRK06116 glutathione reductase; Validated
Probab=51.25 E-value=39 Score=32.12 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+.+.|++++.++ |+.+. . . .|.++|+++.+|.||+||...
T Consensus 97 ~~~~~~l~~~gv~~~~g~-~~~v~--~--~---~v~~~g~~~~~d~lViATGs~ 142 (450)
T PRK06116 97 GSYRNGLENNGVDLIEGF-ARFVD--A--H---TVEVNGERYTADHILIATGGR 142 (450)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEcc--C--C---EEEECCEEEEeCEEEEecCCC
Confidence 334455667899998885 44442 2 2 244478889999999999753
No 300
>PRK06444 prephenate dehydrogenase; Provisional
Probab=50.01 E-value=35 Score=28.44 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.9
Q ss_pred ecCEEEEccChhhHHHhhhc
Q 018455 208 SAGAVVLAVGISTLQELIKN 227 (355)
Q Consensus 208 ~ad~VV~a~p~~~~~~l~~~ 227 (355)
.||.||+|+|+..+.+++..
T Consensus 31 ~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 31 KADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CCCEEEEeCCHHHHHHHHHH
Confidence 47999999999998887654
No 301
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.70 E-value=54 Score=30.94 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEE---------eCCeEEecCEEEEccChh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV---------CGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~---------~~g~~~~ad~VV~a~p~~ 219 (355)
.++...+...|.++ ...+|++|..++ +.| .+. .+|+++.+|.+|+|+...
T Consensus 66 ~~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 66 EPVRPALAKLPNRY-LRAVVYDVDFEE--KRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred HHHHHHhccCCeEE-EEEEEEEEEcCC--CEE-EEecccccccccCCceEecCCEEEECCCcc
Confidence 34555555566665 567899998876 323 231 135689999999999764
No 302
>PRK06370 mercuric reductase; Validated
Probab=45.05 E-value=56 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 168 WMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+...+++. |+++++++.+. .++ . .|.++++++.+|+||+||...
T Consensus 100 ~~~~~~~~~gv~v~~g~~~~---~~~--~---~v~v~~~~~~~d~lViATGs~ 144 (463)
T PRK06370 100 SEQWLRGLEGVDVFRGHARF---ESP--N---TVRVGGETLRAKRIFINTGAR 144 (463)
T ss_pred HHHHHhcCCCcEEEEEEEEE---ccC--C---EEEECcEEEEeCEEEEcCCCC
Confidence 34455666 99999998763 222 2 244477889999999999864
No 303
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=43.74 E-value=64 Score=30.90 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred HHHHHHHH-cCcEEEcCceeeEEEecCC-CC--eEEEEEe-CCeEEecCEEEEccChhh
Q 018455 167 PWMDSMRT-RGCEFLDGRRVTDFIYDEE-RC--CISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 167 ~l~~~l~~-~G~~i~l~~~V~~I~~~~~-~~--~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
.+.+.+-. ...+|+-+. |..|...+. .| ++.||.+ +|..+.|+.||++|..-.
T Consensus 129 ~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 129 NMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL 186 (679)
T ss_pred HHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccce
Confidence 34444432 345665554 455555432 12 3667776 899999999999998543
No 304
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=42.85 E-value=67 Score=30.98 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=28.1
Q ss_pred cCcEE-EcCceeeEEEecCCCCeEEEEEe---------CC-----------eEEecCEEEEccCh
Q 018455 175 RGCEF-LDGRRVTDFIYDEERCCISDVVC---------GK-----------ETYSAGAVVLAVGI 218 (355)
Q Consensus 175 ~G~~i-~l~~~V~~I~~~~~~~~v~~v~~---------~g-----------~~~~ad~VV~a~p~ 218 (355)
.|+++ ++++.+.+|..+++ |++.+|.+ +| .+++||.||+|+..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 45543 56888888876543 45666542 12 26899999999874
No 305
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=40.71 E-value=42 Score=31.48 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeC----------------CeEEecCEEEEccCh--hhHHHhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------------KETYSAGAVVLAVGI--STLQELI 225 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----------------g~~~~ad~VV~a~p~--~~~~~l~ 225 (355)
++.-|.+.+++.|++|.-+..+.++..++| |.|.+|.++ |-.+.|+.-|.|-.- ...++++
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 556677888899999999999999999988 578888762 224567888887654 4455555
Q ss_pred h
Q 018455 226 K 226 (355)
Q Consensus 226 ~ 226 (355)
.
T Consensus 264 k 264 (621)
T KOG2415|consen 264 K 264 (621)
T ss_pred H
Confidence 4
No 306
>PLN02546 glutathione reductase
Probab=38.81 E-value=74 Score=31.36 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~ 219 (355)
+.+.+.+++.|+++..+.- +.+. . . .|.++|+++.+|+||+||...
T Consensus 182 ~~~~~~l~~~gV~~i~G~a-~~vd--~--~---~V~v~G~~~~~D~LVIATGs~ 227 (558)
T PLN02546 182 GIYKNILKNAGVTLIEGRG-KIVD--P--H---TVDVDGKLYTARNILIAVGGR 227 (558)
T ss_pred HHHHHHHHhCCcEEEEeEE-EEcc--C--C---EEEECCEEEECCEEEEeCCCC
Confidence 4455556677888877633 3332 2 1 244478889999999999754
No 307
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.65 E-value=1e+02 Score=29.43 Aligned_cols=55 Identities=16% Similarity=-0.005 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcC--cEEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VV~a~p~~~ 220 (355)
+.+-|...++..+ ..|++++.|.++...++| .|.|.+ + + +...+|.||+|+....
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g--kW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG--KWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccCC--ceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 3344444455444 479999999999887642 577766 2 2 4678999999998873
No 308
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=38.23 E-value=97 Score=29.64 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=32.2
Q ss_pred HHHHHHHHcCcEEEcCceeeEEE--ecCCCCeEEEEEe-CCe--EEecCEEEEccChh
Q 018455 167 PWMDSMRTRGCEFLDGRRVTDFI--YDEERCCISDVVC-GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~--~~~~~~~v~~v~~-~g~--~~~ad~VV~a~p~~ 219 (355)
.+.+.+++.|++++.++- +.+. .++ ..+ .|.+ +|+ ++.+|+||+||...
T Consensus 97 ~~~~~l~~~gV~~~~g~~-~~~~~~~~~--~~v-~V~~~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 97 DIRARLEREGVRVIAGRG-RLIDPGLGP--HRV-KVTTADGGEETLDADVVLIATGAS 150 (466)
T ss_pred HHHHHHHHCCCEEEEEEE-EEeecccCC--CEE-EEEeCCCceEEEecCEEEEcCCCC
Confidence 344556778999987754 4343 333 234 3554 554 79999999999864
No 309
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.22 E-value=62 Score=29.60 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
+..+|.++.++-.++|.-..++++++..+..+....|++ +|..+.++.||+++.+.-
T Consensus 268 l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 667788888888899999999999998532122446777 788999999999998753
No 310
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.85 E-value=98 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccChh
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIS 219 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VV~a~p~~ 219 (355)
+.+...+++.|++++.++. +.+. . ..+ .|.. + ++++.+|+||+||...
T Consensus 96 ~~~~~~~~~~gv~~~~g~~-~~~~--~--~~~-~v~~~~~~~~~~~d~lViAtGs~ 145 (462)
T PRK06416 96 GGVEGLLKKNKVDIIRGEA-KLVD--P--NTV-RVMTEDGEQTYTAKNIILATGSR 145 (462)
T ss_pred HHHHHHHHhCCCEEEEEEE-EEcc--C--CEE-EEecCCCcEEEEeCEEEEeCCCC
Confidence 3455566778999988853 3332 2 224 3543 3 4689999999999764
No 311
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=33.72 E-value=1e+02 Score=27.48 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcC-cEEEcCceeeEEEecCCCCeEEEEEeC-----CeEEecCEEEEccChhhHHH
Q 018455 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQE 223 (355)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~-----g~~~~ad~VV~a~p~~~~~~ 223 (355)
+...+...+.+.| +++.++. |.++..+. +|+.+|... ....+++++|+++.||.-+-
T Consensus 149 Fc~~i~sea~k~~~V~lv~Gk-v~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskl 211 (380)
T KOG2852|consen 149 FCHFILSEAEKRGGVKLVFGK-VKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKL 211 (380)
T ss_pred HHHHHHHHHHhhcCeEEEEee-eEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchhh
Confidence 6677777776665 7877664 67777544 456566542 34567889999999997653
No 312
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=33.12 E-value=1.4e+02 Score=28.67 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 018455 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (355)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VV~a~p~~~ 220 (355)
.+...++..|+++..+. +..+..++++..| .+.. +++++++|+||+||....
T Consensus 105 ~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~v-~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 105 GIEGLFKKNKITVLKGR-GSFVGKTDAGYEI-KVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred HHHHHHHhCCCEEEEEE-EEEecCCCCCCEE-EEecCCCeEEEeCEEEEeCCCCC
Confidence 34445566788887665 4555544432222 2332 246899999999998753
No 313
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=32.16 E-value=1.2e+02 Score=30.54 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=30.9
Q ss_pred HHcCcEEEcCceeeEEEecCCCCeEEEEEe----------------CC--eEEecCEEEEccChh
Q 018455 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC----------------GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------------~g--~~~~ad~VV~a~p~~ 219 (355)
.+.|++|++++.+.+|..++++-.+..+.. +| .++++|.||+|+...
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 356999999999999986553101211111 12 258999999999853
No 314
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=30.78 E-value=79 Score=31.18 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 018455 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (355)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VV~a~p~~~ 220 (355)
+...|.+.+.+ .+.+|.-+..|.+|..+++ +.+.++.. +|+ .+.+++||+||....
T Consensus 140 ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 140 LLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 44567777655 5668999999999998865 33556643 343 567899999997655
No 315
>PTZ00367 squalene epoxidase; Provisional
Probab=29.65 E-value=2e+02 Score=28.49 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=38.1
Q ss_pred HHHHHHHHH---HHcCcEEEcCceeeEEEecCCC--CeEEEEEe---C-----------------------CeEEecCEE
Q 018455 164 IFEPWMDSM---RTRGCEFLDGRRVTDFIYDEER--CCISDVVC---G-----------------------KETYSAGAV 212 (355)
Q Consensus 164 l~~~l~~~l---~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~---~-----------------------g~~~~ad~V 212 (355)
+.+.|.+.+ ...++++. ...|+++..++++ +++.+|+. + +++++||.|
T Consensus 133 ~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLv 211 (567)
T PTZ00367 133 FVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLV 211 (567)
T ss_pred HHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEE
Confidence 445566655 23578885 5678888655421 12445543 2 457999999
Q ss_pred EEccChhhH-HHhh
Q 018455 213 VLAVGISTL-QELI 225 (355)
Q Consensus 213 V~a~p~~~~-~~l~ 225 (355)
|.|-..... ++.+
T Consensus 212 VgADG~~S~vR~~l 225 (567)
T PTZ00367 212 VMCDGGMSKFKSRY 225 (567)
T ss_pred EECCCcchHHHHHc
Confidence 999988753 4444
No 316
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=29.62 E-value=76 Score=25.57 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCcEEEcCceeeE---EEecCCCCeEEEEEeCCeEEecCEEEEcc
Q 018455 166 EPWMDSMRTRGCEFLDGRRVTD---FIYDEERCCISDVVCGKETYSAGAVVLAV 216 (355)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~---I~~~~~~~~v~~v~~~g~~~~ad~VV~a~ 216 (355)
+.+++.++++|.+..+|..-.. |---+. .| +.+...+.+.||.|+++.
T Consensus 47 ~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~-~R--~~v~~~GIy~ADVVLVPL 97 (178)
T PF02006_consen 47 EKIAELLREHGAEEVLGVNPDASERIPGLDH-ER--AKVSKEGIYSADVVLVPL 97 (178)
T ss_pred HHHHHHHHHcCCCEeeccCCcccccCCCCCC-cc--ceECcccceeccEEEecc
Confidence 6788899999997777774332 211110 11 222245689999999875
No 317
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.37 E-value=1.5e+02 Score=31.54 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=31.9
Q ss_pred HcCcEEEcCceeeEEEecCC-------------CCeEEEEEeC-CeEEecCEEEEccChhhHHHhh
Q 018455 174 TRGCEFLDGRRVTDFIYDEE-------------RCCISDVVCG-KETYSAGAVVLAVGISTLQELI 225 (355)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~-------------~~~v~~v~~~-g~~~~ad~VV~a~p~~~~~~l~ 225 (355)
+.|++++.++.+.+|..++. .|+...+.++ +.+++||.||+|++...-..++
T Consensus 719 eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntell 784 (1019)
T PRK09853 719 EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELL 784 (1019)
T ss_pred HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHH
Confidence 46899999998888863110 0111112222 3579999999999875433333
No 318
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=29.08 E-value=1.8e+02 Score=27.89 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=31.6
Q ss_pred HHHHHHHcCcEEEcCceeeEEEec---CCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYD---EERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~---~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~ 219 (355)
..+.+++.|+++..++ ++.|..+ ++.+.+ .|.+ +| +++.+|++|+||...
T Consensus 98 ~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~-~v~~~~g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 98 VAALLKKGKIDVFHGI-GRILGPSIFSPMPGTV-SVETETGENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEE-EEEeCCCceEEEEcCEEEEeCCCC
Confidence 3444566789998875 4555543 111234 4554 44 579999999999764
No 319
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.45 E-value=52 Score=23.23 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=16.0
Q ss_pred ecCEEEEccChhhHHHhhhcc
Q 018455 208 SAGAVVLAVGISTLQELIKNS 228 (355)
Q Consensus 208 ~ad~VV~a~p~~~~~~l~~~~ 228 (355)
.+|.||+++||..+..++.+.
T Consensus 61 ~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp HTSEEEE-S-GGGHHHHHHHH
T ss_pred cCCEEEEEECHHHHHHHHHHH
Confidence 589999999999998887653
No 320
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.43 E-value=1.8e+02 Score=27.96 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=29.9
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VV~a~p~~ 219 (355)
+...+++.|+++..++.+ - .++ ..+ .|.. +| +++.+|+||+||...
T Consensus 99 ~~~~~~~~gV~~~~g~a~-~--~~~--~~v-~v~~~~g~~~~~~~d~lViATGs~ 147 (471)
T PRK06467 99 LAGMAKGRKVTVVNGLGK-F--TGG--NTL-EVTGEDGKTTVIEFDNAIIAAGSR 147 (471)
T ss_pred HHHHHHhCCCEEEEEEEE-E--ccC--CEE-EEecCCCceEEEEcCEEEEeCCCC
Confidence 344566789999887643 2 222 234 4554 45 478999999999864
No 321
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=27.91 E-value=1.6e+02 Score=27.98 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe--EEecCEEEEccChh
Q 018455 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VV~a~p~~ 219 (355)
.+.+.+++.|++++.++ +..+. . +.+ .|.. +|+ ++++|+||+||...
T Consensus 99 ~~~~~~~~~~v~~~~g~-~~~~~--~--~~~-~v~~~~g~~~~~~~d~lviATGs~ 148 (461)
T PRK05249 99 VRRGQYERNRVDLIQGR-ARFVD--P--HTV-EVECPDGEVETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHHHHCCCEEEEEE-EEEec--C--CEE-EEEeCCCceEEEEcCEEEEcCCCC
Confidence 34455677899998875 33332 2 224 3554 453 78999999999753
No 322
>PLN02507 glutathione reductase
Probab=27.85 E-value=1.7e+02 Score=28.40 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHHcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe--EEecCEEEEccChh
Q 018455 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGIS 219 (355)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VV~a~p~~ 219 (355)
+.+.+...|+++..+ .++.+. . ..+ .|.+ +|+ ++.+|+||+|+...
T Consensus 130 ~~~~l~~~gV~~i~g-~a~~vd--~--~~v-~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGKIVG--P--NEV-EVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred HHHHHHhCCcEEEEE-EEEEec--C--CEE-EEEeCCCcEEEEEcCEEEEecCCC
Confidence 334456678888776 444443 2 224 4555 454 58999999999854
No 323
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=26.37 E-value=2e+02 Score=26.34 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH---cC-cEEEcCceeeEEEecCCCCeEEEEEe------C---C----------eEEecCEEEEccC
Q 018455 164 IFEPWMDSMRT---RG-CEFLDGRRVTDFIYDEERCCISDVVC------G---K----------ETYSAGAVVLAVG 217 (355)
Q Consensus 164 l~~~l~~~l~~---~G-~~i~l~~~V~~I~~~~~~~~v~~v~~------~---g----------~~~~ad~VV~a~p 217 (355)
+.+++.+.+++ .| +++++.++|.++..++ |+|++|.- + | -++.|.+||+|..
T Consensus 151 vl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 151 VLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred hhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 45666666543 44 7899999999999988 66887741 0 1 1467888999875
No 324
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.36 E-value=86 Score=29.31 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=27.5
Q ss_pred cEEEcCceeeEEEecCCCCeEEE--EEe-CCeEEecCEEEEccCh
Q 018455 177 CEFLDGRRVTDFIYDEERCCISD--VVC-GKETYSAGAVVLAVGI 218 (355)
Q Consensus 177 ~~i~l~~~V~~I~~~~~~~~v~~--v~~-~g~~~~ad~VV~a~p~ 218 (355)
-.+|+|++|+.|...+. +.+.. |++ ++.+++|+.+|+.+..
T Consensus 112 ~~~rfg~~V~~i~~~~~-d~~~~~~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 112 PSLRFGEEVTDISSLDG-DAVVRLFVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred CccccCCeeccccccCC-cceeEEEEEcCCCcEEEeeeEEEccCC
Confidence 47899999997733221 22222 333 6779999999998764
No 325
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=23.67 E-value=83 Score=25.18 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCcchHHHHHHHHHHHHcCcEE--EcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH--HHhhhcccccCc
Q 018455 158 GTLREKIFEPWMDSMRTRGCEF--LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL--QELIKNSILCNR 233 (355)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~i--~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VV~a~p~~~~--~~l~~~~~l~~~ 233 (355)
|-.+. ++..++..|.+.|.+| +--+.|.++ + --.+|+||++.|...- .+-+.+ .+.+.
T Consensus 12 GqT~k-IA~~iA~~L~e~g~qvdi~dl~~~~~~--------------~--l~~ydavVIgAsI~~~h~~~~~~~-Fv~k~ 73 (175)
T COG4635 12 GQTRK-IAEYIASHLRESGIQVDIQDLHAVEEP--------------A--LEDYDAVVIGASIRYGHFHEAVQS-FVKKH 73 (175)
T ss_pred CcHHH-HHHHHHHHhhhcCCeeeeeehhhhhcc--------------C--hhhCceEEEecchhhhhhHHHHHH-HHHHH
Confidence 44555 8888998898877553 222222111 1 1237999999988642 222211 11111
Q ss_pred HHHHhhccCCcccEEEEEEEEccC
Q 018455 234 EEFLKVLNLASIDVVSVKLWFDKK 257 (355)
Q Consensus 234 ~~~~~~~~l~~~~~~~v~l~~~~~ 257 (355)
...+... .+..+++.+.++.+
T Consensus 74 --~e~L~~k-P~A~f~vnl~a~k~ 94 (175)
T COG4635 74 --AEALSTK-PSAFFSVNLTARKE 94 (175)
T ss_pred --HHHHhcC-CceEEEeehhhccc
Confidence 1123332 23466777777665
No 326
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.43 E-value=62 Score=20.93 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.6
Q ss_pred hcccccHHHHHHHhCCCH
Q 018455 92 KYDSITARELFKQFGCSE 109 (355)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~ 109 (355)
+-|++|..+||++.|.-+
T Consensus 5 ESDnETA~~FL~RvGr~q 22 (60)
T PF06072_consen 5 ESDNETATEFLRRVGRQQ 22 (60)
T ss_pred ccccccHHHHHHHHhHHH
Confidence 468999999999876544
No 327
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.02 E-value=2.7e+02 Score=24.98 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=36.6
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChhh
Q 018455 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 220 (355)
Q Consensus 166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VV~a~p~~~ 220 (355)
+.+.+.+.++ +++++++++|.+|.-++ +.+|+. + | .++.+|.|.+++....
T Consensus 182 ~~~~~~l~~~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 182 EILVERLKKNVKIEVLTNTVVKEILGDD----VEGVVLKNVKGEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred HHHHHHHHhcCCeEEEeCCceeEEecCc----cceEEEEecCCceEEEEeceEEEecCCCC
Confidence 4566777766 79999999999998543 344544 2 3 3678999999886643
Done!