Query 018457
Match_columns 355
No_of_seqs 167 out of 213
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3937 mRNA splicing factor [ 100.0 1.7E-92 3.7E-97 668.1 26.8 331 1-351 1-335 (371)
2 PF05282 AAR2: AAR2 protein; 100.0 2.6E-84 5.6E-89 639.8 9.4 329 11-351 1-349 (362)
3 PF08308 PEGA: PEGA domain; I 66.8 12 0.00025 27.8 4.4 43 14-58 2-44 (71)
4 PF09430 DUF2012: Protein of u 45.7 25 0.00055 29.4 3.5 39 19-58 4-49 (123)
5 KOG4206 Spliceosomal protein s 43.4 12 0.00027 34.7 1.3 44 14-57 147-192 (221)
6 PF10685 KGG: Stress-induced b 39.8 24 0.00053 21.0 1.7 14 1-14 5-18 (23)
7 PRK05718 keto-hydroxyglutarate 34.0 20 0.00044 33.1 1.2 47 1-49 116-162 (212)
8 KOG1199 Short-chain alcohol de 25.3 56 0.0012 29.7 2.4 21 4-24 24-44 (260)
9 KOG3932 CDK5 kinase activator 20.3 1.8E+02 0.004 28.2 4.8 76 214-289 231-342 (357)
10 cd00712 AsnB Glutamine amidotr 17.6 82 0.0018 28.6 1.9 18 38-56 192-209 (220)
No 1
>KOG3937 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.7e-92 Score=668.06 Aligned_cols=331 Identities=41% Similarity=0.648 Sum_probs=296.4
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeE
Q 018457 1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEV 80 (355)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~ev 80 (355)
||||.|.+|+++|+||+++|+|.+|+||||++||++||+|+||||||||+||||||+..+.| ||+|||+.++++++
T Consensus 1 mdpe~a~~l~~~gatl~flg~P~~t~~GID~~s~~vgpkF~GIKmIPpGVHfv~yss~~~ag----pr~Gff~~~h~~~~ 76 (371)
T KOG3937|consen 1 MDPELALRLLADGATLVFLGVPQGTEFGIDQYSYEVGPKFRGIKMIPPGVHFVHYSSADPAG----PRIGFFHDVHPGEI 76 (371)
T ss_pred CCHHHHHHHHhcCCEEEEecCccceEecceeeeeecCCCCCCccccCCceEEEEeecCCCCC----CeeEEEEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999876654 99999999999999
Q ss_pred EEEEecccccccccCChH--HHHHHHHhhcchhhhccCccccchhhhhHHHhhccCCHhhhccccccCCceeeeeccccc
Q 018457 81 IVRKWDQQEERLVKVSEE--EEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMM 158 (355)
Q Consensus 81 ~V~kWd~~~E~l~~~~~~--~~~r~~~~l~~~~~d~~L~pYp~~~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~ 158 (355)
+|++||++.|++...++. +.++.+.|++ ++|+.|+|||++.++.|..||+|||.++|+||.|.+|+|++..|+...
T Consensus 77 ~v~~wd~~~E~~~~~~~~e~e~~~~~~nl~--e~d~~l~pYpy~~~~~W~~LT~fIt~d~Veri~p~~g~i~~~~d~~~~ 154 (371)
T KOG3937|consen 77 YVRKWDTKDETLKMEEEPEVERDEIRHNLK--ELDMMLAPYPYEEYKTWYNLTNFITEDTVERIVPTEGNIFSYVDSSSL 154 (371)
T ss_pred EEEeccccchhhhcccCchhHHHHHHHHHH--HHhhccCCCChhhhhhHHHHhhhhhHHHHHhheecCCcEEEEEeeeee
Confidence 999999999988743333 3356667776 899999999999999999999999999999999999999999887665
Q ss_pred cCCCCchHHHHHHHHhhhcccccccCCCCCCC--ceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhH
Q 018457 159 KNTPKSTMERALDEQLKTSKFTASVDSSQKKG--CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTL 236 (355)
Q Consensus 159 ~~~~~t~~E~~l~~~~~~~~~~~~~~~~~~~~--~~ft~Ip~~~~~~~a~~~eiT~~~~DkS~~L~~vl~~~~~~~~~~l 236 (355)
.+.+...++..+..+.+..+. ..|++++.++ +|||.||+..++.|++|.|+|+++|||||+|+.|+.+.+.+++..+
T Consensus 155 ~~~~~v~~~~~~~~~~s~~e~-~lp~~k~~~g~~lrft~iP~~~~~~~a~g~E~s~~~lDksy~l~~vl~~~~~~n~~~l 233 (371)
T KOG3937|consen 155 TVGDRVLQEISLQKRGSKDEG-KLPDLKPRAGTELRFTVIPFLSVPQGATGAEMSKHALDKSYLLETVLLGGWFDNPDNL 233 (371)
T ss_pred cCCcccccccccccccccccc-cccccCCCcccceeeeecCcccccCCCCchhhhhhhhhHHHHHHHHHhcccCCCHHHH
Confidence 555555444444333222211 2567777666 9999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHHHhhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccCCcc
Q 018457 237 LGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWL 316 (355)
Q Consensus 237 LGELQfaFl~fl~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~~~~~~~~~~~~f~~d~~~~ 316 (355)
||||||||||||+|+||+||+|||+||+|||+|+.+ +.+|+.+|.+||++|++||+++| +|||+++ +
T Consensus 234 lgELQfAFv~fl~g~~yesfeqWk~ml~LL~~S~a~-~~kh~~ly~kfievlyhQLk~~p----------~dl~~~~--l 300 (371)
T KOG3937|consen 234 LGELQFAFVCFLFGQSYESFEQWKRMLSLLLCSSAA-VPKHKELYMKFIEVLYHQLKELP----------EDLFVSI--L 300 (371)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-ccccHHHHHHHHHHHHHHhccCh----------HHhhcch--h
Confidence 999999999999999999999999999999966655 89999999999999999999998 5899977 9
Q ss_pred CCCchHHHHHHHHHHHhhcccCCchhhHHHHhhhc
Q 018457 317 SADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKH 351 (355)
Q Consensus 317 s~~nfL~~~l~~f~~~~~~~~~~~~~l~~~~~~~~ 351 (355)
+++|||+.+|+.|++++.+++.|+++|++|+++++
T Consensus 301 ~~dn~l~~~l~~~f~n~~~~s~~~~~L~k~~~~fk 335 (371)
T KOG3937|consen 301 SEDNFLTSLLSSLFANVLDGSEAIMDLLKKAEKFK 335 (371)
T ss_pred ccccchHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999875
No 2
>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins. The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.
Probab=100.00 E-value=2.6e-84 Score=639.78 Aligned_cols=329 Identities=46% Similarity=0.719 Sum_probs=207.7
Q ss_pred hcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEeccccc
Q 018457 11 KHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEE 90 (355)
Q Consensus 11 ~~g~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~ev~V~kWd~~~E 90 (355)
++||+||++|||+||+||||+++|++||+|+||||||||+||||||+..+++ +.++|+|||+++++++|+|+|||+++|
T Consensus 1 ~~g~~llll~vP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~~-~~~~R~G~f~~~~~~~v~V~kWd~~~E 79 (362)
T PF05282_consen 1 EEGATLLLLDVPEGTEFGIDYKSFTVGPNFKGIKMIPPGVHFIHYSSSSKNG-ESSPRYGFFFNFKPGEVIVRKWDPENE 79 (362)
T ss_dssp ---EEEEBS---S-EEEEETTEEEEE-TT--EEEEE-TT-EEEEEE---ETT-ECCEEEEEEE-CCC--EEEEEEETTTT
T ss_pred CcceEEEEeCCCCCcEEEEcceEEEcCCCceEEecCCCCceEEEEecccCCC-CcCceEEEEEEeeCCEEEEEEeCCCcC
Confidence 5899999999999999999999999999999999999999999999655555 789999999999999999999999999
Q ss_pred ccccCCh--HHHHHHHHhhcchhhhccCccccchhhh-hHHHhhccCCHhhhccccccCCceeeeec----cccccCCCC
Q 018457 91 RLVKVSE--EEEARYTQAVCSLEFDKQLGPYTLSQYG-EWKRLSSYITKSIIERIEPIGGEITVTAE----SGMMKNTPK 163 (355)
Q Consensus 91 ~l~~~~~--~~~~r~~~~l~~~~~d~~L~pYp~~~~~-~W~~LT~~It~~~l~Ri~p~~g~i~~~~e----~~~~~~~~~ 163 (355)
+|...++ ++.++++...+..++|++|+|||++.+. +|++||+|||+++|+||.|.+|.|+...+ ...+.+.++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~l~~~d~~L~pYP~~~~~~~W~~LT~~It~~~l~ri~p~~~~i~~~~~~~~~~~~v~~~~~ 159 (362)
T PF05282_consen 80 DLVDEPESEEEEERYRQRVNLKEFDKYLGPYPYEDYSDKWKSLTSYITEEVLERITPVNGTISSATESPSESWYVDSSSS 159 (362)
T ss_dssp EEEEEEE----HHHHHHHHCHHHHCTTSEE----TTT-HHHHHHTT--HHHHHHHC--T---------T-SSEEEETT-E
T ss_pred ceeccccccchHHHHHHHHhHHHHHhhcCCcCCchhhchHHHHhhhCCHHHHhhhcCCCccccccccccccccccCCCcC
Confidence 9987555 3333443333334999999999998876 99999999999999999999988877552 112222222
Q ss_pred chHHHHHHH------HhhhcccccccCCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHH-------HhhcC
Q 018457 164 STMERALDE------QLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLI-------TKNYG 230 (355)
Q Consensus 164 t~~E~~l~~------~~~~~~~~~~~~~~~~~~~~ft~Ip~~~~~~~a~~~eiT~~~~DkS~~L~~vl-------~~~~~ 230 (355)
+..|..... ..........+..++...++||.||+..+|+|++|+|+|+++|||||+|+++| .+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ft~i~~~~~~~~~~~~e~T~~~~DkS~~L~~vi~~~~~~~~~~~~ 239 (362)
T PF05282_consen 160 SKEENRSLPELSESRKKSEDDPSIQSEQDPGTELRFTPIPKRKWPPGATPSERTEDSLDKSWYLEEVIQRGYIELPKDYG 239 (362)
T ss_dssp ECCCCCCT---------------------GGGCE-------TTSCCCS-TT-HHHHHH-THHHHHCCC-------CCCCC
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEeeecccCCCCCCHHHHHHHhccHHHHHHHHHHhhhcccccccC
Confidence 222221100 00000000001101245699999998999999999999999999999999999 77889
Q ss_pred CChhhHHHhHhHHHHHHHhhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccccCCCCCCCCCccc
Q 018457 231 GSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL 310 (355)
Q Consensus 231 ~~~~~lLGELQfaFl~fl~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~~~~~~~~~~~~f~ 310 (355)
+++.+|||||||||||||+|+||+||+|||+||+|||+|+++ +.+||+||.+|+++|++||+.+| +|||
T Consensus 240 ~~~~~lLGELQfaFv~fl~~~n~~s~eQWk~ll~Ll~~~~~~-v~~~~~l~~~~l~~L~~QL~~~p----------~d~~ 308 (362)
T PF05282_consen 240 GDEDELLGELQFAFVNFLLGQNYSSFEQWKSLLELLCNCESA-VSEHPDLFIKFLRVLHAQLKELP----------EDFF 308 (362)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHT--S----HH--HHHHHHHHHHHHHHCCG----------HCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc----------hhhe
Confidence 999999999999999999999999999999999999999888 88999999999999999999987 4788
Q ss_pred ccCCccCCCchHHHHHHHHHHHhhcccCCchhhHHHHhhhc
Q 018457 311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKH 351 (355)
Q Consensus 311 ~d~~~~s~~nfL~~~l~~f~~~~~~~~~~~~~l~~~~~~~~ 351 (355)
+|+++++++|||+++|+.++.++.+...++++|++++++++
T Consensus 309 ~d~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 349 (362)
T PF05282_consen 309 FDISILSSDNFLRKLLKNLFENESDNTEVQEALKKAFEKLE 349 (362)
T ss_dssp --HHHHHHTSTTCCC-HHHHHHHHH----------------
T ss_pred eccccccCcchHHHHHHHHHhhhhccccccccccccccccc
Confidence 88767899999999999999988888888888888887754
No 3
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=66.83 E-value=12 Score=27.78 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=35.3
Q ss_pred CEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecC
Q 018457 14 ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSS 58 (355)
Q Consensus 14 ~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~~ 58 (355)
|+|.+---|.|..|=||....-.+|- .++++|+|.|-|-...+
T Consensus 2 g~l~V~s~p~gA~V~vdg~~~G~tp~--~~~~l~~G~~~v~v~~~ 44 (71)
T PF08308_consen 2 GTLRVTSNPSGAEVYVDGKYIGTTPL--TLKDLPPGEHTVTVEKP 44 (71)
T ss_pred EEEEEEEECCCCEEEECCEEeccCcc--eeeecCCccEEEEEEEC
Confidence 57888888999999999976665553 78889999999998653
No 4
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=45.65 E-value=25 Score=29.36 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.6
Q ss_pred ccCCCceEEeeecccc---cc----CCCeeeEeecCCcceEEEEecC
Q 018457 19 LDVPQYTLFGIDTQMF---SV----GPSFKGIKMIPPGVHFVFYSSS 58 (355)
Q Consensus 19 l~lP~gt~~GID~~sf---~~----g~~F~GIK~IPpG~Hfi~~s~~ 58 (355)
.++|.+|.|-+|...+ .+ +-.|. +.+||+|.|.+-..+.
T Consensus 4 ~~~~~~t~V~L~~g~~~~~~~~v~~dG~F~-f~~Vp~GsY~L~V~s~ 49 (123)
T PF09430_consen 4 NNLPSSTRVTLNGGQYRPISAFVRSDGSFV-FHNVPPGSYLLEVHSP 49 (123)
T ss_pred ccCCCCEEEEEeCCCccceEEEecCCCEEE-eCCCCCceEEEEEECC
Confidence 5789999999998776 33 22332 8899999999998753
No 5
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=43.42 E-value=12 Score=34.69 Aligned_cols=44 Identities=32% Similarity=0.584 Sum_probs=38.6
Q ss_pred CEEEEccCCCceEEeeeccccccCCCeeeEeecC--CcceEEEEec
Q 018457 14 ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIP--PGVHFVFYSS 57 (355)
Q Consensus 14 ~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IP--pG~Hfi~~s~ 57 (355)
-++++.++|+.|+-=.+..-|..=+-|++|++|| +|+=|+.|.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~ 192 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLS 192 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecch
Confidence 4678899999999888888888889999999999 7889999965
No 6
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=39.75 E-value=24 Score=20.99 Aligned_cols=14 Identities=50% Similarity=0.798 Sum_probs=12.9
Q ss_pred CCHHHHHHHHhcCC
Q 018457 1 MDPEAALELVKHGA 14 (355)
Q Consensus 1 md~~~a~~l~~~g~ 14 (355)
||||.|++.-..||
T Consensus 5 ~d~e~~~eig~kGG 18 (23)
T PF10685_consen 5 MDPEKAREIGRKGG 18 (23)
T ss_pred cCHHHHHHHHHhcC
Confidence 89999999998887
No 7
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.99 E-value=20 Score=33.06 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCc
Q 018457 1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPG 49 (355)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG 49 (355)
|+|..+.+..+.|+.++-+ .|.+..-|+++..=-.+ +|.+++.+|.|
T Consensus 116 ~TptEi~~a~~~Ga~~vKl-FPa~~~gg~~~lk~l~~-p~p~~~~~ptG 162 (212)
T PRK05718 116 STPSELMLGMELGLRTFKF-FPAEASGGVKMLKALAG-PFPDVRFCPTG 162 (212)
T ss_pred CCHHHHHHHHHCCCCEEEE-ccchhccCHHHHHHHhc-cCCCCeEEEeC
Confidence 6888899999999999988 88876545776543333 47778887775
No 8
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.34 E-value=56 Score=29.69 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCEEEEccCCCc
Q 018457 4 EAALELVKHGATLLLLDVPQY 24 (355)
Q Consensus 4 ~~a~~l~~~g~~llll~lP~g 24 (355)
..|.+|.++|+.++++|+|..
T Consensus 24 ataerlakqgasv~lldlp~s 44 (260)
T KOG1199|consen 24 ATAERLAKQGASVALLDLPQS 44 (260)
T ss_pred HHHHHHHhcCceEEEEeCCcc
Confidence 478899999999999999974
No 9
>KOG3932 consensus CDK5 kinase activator p35/Nck5a [Cell cycle control, cell division, chromosome partitioning]
Probab=20.31 E-value=1.8e+02 Score=28.23 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=46.4
Q ss_pred cCchHHHHHHH----------------H-HhhcCCChhhHHHhHhHHHHHHHh-hcchHHH---------------H-HH
Q 018457 214 NLDKTELLESL----------------I-TKNYGGSEDTLLGELQFAFIAFLM-GQSLEAF---------------L-QW 259 (355)
Q Consensus 214 ~~DkS~~L~~v----------------l-~~~~~~~~~~lLGELQfaFl~fl~-g~s~~sf---------------e-QW 259 (355)
+.|||.+|+-. | +.-..+++..=+.|||-+|+..|+ .+||.+- | -|
T Consensus 231 sVDRSLLLQGWQD~aFInPANlVFvylLvRdvlsg~e~~s~~eLqA~~LtCLYlsYSYMGNEISYPLKPFLVe~dke~FW 310 (357)
T KOG3932|consen 231 SVDRSLLLQGWQDQAFINPANLVFVYLLVRDVLSGEEIHSLEELQAWILTCLYLSYSYMGNEISYPLKPFLVENDKETFW 310 (357)
T ss_pred hhhHHHHhhhccccccccchheehhhhhHHhhcCchhhccHHHHHHHHHHHHHHHHHhhcccccccccceeecccHHHHH
Confidence 68999888632 1 112245567778999999999883 3555442 2 48
Q ss_pred HHHHHHHhc-CCCC-CcccchHHHHHHHHHHH
Q 018457 260 KSLVSLLFG-CSEA-PLHTRSQLFTMFIKVIY 289 (355)
Q Consensus 260 k~Ll~Ll~~-c~~a-~i~~~~~lf~~fi~vL~ 289 (355)
-|-|.++-. +... .+-..|.||.++..-|.
T Consensus 311 dRCl~~vn~lS~qML~lNadp~fFteVFtdLK 342 (357)
T KOG3932|consen 311 DRCLAMVNSLSRQMLLLNADPHFFTEVFTDLK 342 (357)
T ss_pred HHHHHHHHHhhHHHhhhcCCCchHHHHHHHhh
Confidence 876665422 2222 13446778888775544
No 10
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=17.56 E-value=82 Score=28.63 Aligned_cols=18 Identities=44% Similarity=1.019 Sum_probs=14.6
Q ss_pred CCeeeEeecCCcceEEEEe
Q 018457 38 PSFKGIKMIPPGVHFVFYS 56 (355)
Q Consensus 38 ~~F~GIK~IPpG~Hfi~~s 56 (355)
+.|+||+-+||| |++.++
T Consensus 192 T~~~~V~~l~pG-~~l~~~ 209 (220)
T cd00712 192 TIFKGIRKLPPG-HYLTVD 209 (220)
T ss_pred chhcCceEECCc-eEEEEE
Confidence 468999999999 666665
Done!