Query 018457
Match_columns 355
No_of_seqs 167 out of 213
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbt_B A1 cistron-splicing fac 100.0 1.5E-73 5.1E-78 556.2 13.6 288 15-330 3-297 (363)
2 2rj2_A F-box only protein 2; u 13.7 67 0.0023 27.8 1.5 20 41-60 144-163 (185)
3 2aze_C Retinoblastoma-associat 10.7 2.1E+02 0.0072 18.8 2.8 24 249-272 7-30 (46)
4 3pm7_A Uncharacterized protein 9.8 1.8E+02 0.0063 21.6 2.6 33 77-109 36-71 (80)
5 3dt5_A Uncharacterized protein 9.1 1.7E+02 0.0058 22.7 2.2 15 252-266 87-101 (135)
6 1lyp_A CAP18; lipopolysacchari 8.8 3.4E+02 0.012 16.0 2.9 24 322-351 2-25 (32)
7 2wq4_A Lectin; LUNG, pathogen, 8.4 1.2E+02 0.0041 24.4 1.1 31 5-44 29-59 (156)
8 3d0w_A YFLH protein; GRAM-posi 8.3 1.7E+02 0.006 22.9 2.0 24 308-333 62-85 (104)
9 2aqm_A Superoxide dismutase [C 7.9 2.7E+02 0.0092 23.1 3.2 32 14-57 20-51 (154)
10 3bu8_A Telomeric repeat-bindin 7.9 1.1E+03 0.037 20.9 9.1 44 249-297 28-71 (235)
No 1
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=100.00 E-value=1.5e-73 Score=556.23 Aligned_cols=288 Identities=20% Similarity=0.313 Sum_probs=235.6
Q ss_pred EEEEccCCCceEEeeecccccc--CCCeeeEeecCCc-ceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEecccccc
Q 018457 15 TLLLLDVPQYTLFGIDTQMFSV--GPSFKGIKMIPPG-VHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEER 91 (355)
Q Consensus 15 ~llll~lP~gt~~GID~~sf~~--g~~F~GIK~IPpG-~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~ev~V~kWd~~~E~ 91 (355)
|||++|||+|++||||+++|++ ||+|+|||||||| +||||||++ +. .++|+|||+++++++|+ ++||+++|+
T Consensus 3 tlllldlP~gt~~GID~~sftv~~g~~F~GIK~IPpG~~Hfih~s~~-e~---~s~R~Gfw~~~~~~~v~-~~WD~~~E~ 77 (363)
T 3sbt_B 3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHA-DN---SSMRYGYWFDCRMGNFY-IQYDPKDGL 77 (363)
T ss_dssp EEEBSCCCSCEEEEETTEEEEECTTCCCCEEEEECTTSCEEEEEEET-TE---EEEEEEEEECGGGCEEE-EEEETTTTE
T ss_pred eEEecCCCCCcEEeeeccEEEcCCCCCCcceecCCCCCCEEEEEecC-CC---CCcceEEEEEeeCCeEE-EEEcCCcce
Confidence 7999999999999999999999 7999999999999 999999985 22 27999999999999999 799999999
Q ss_pred cccCChHHHHHHHHhhcchhhhccCccccch-hhhhHHHhhccCCHhhhccccccCCceeeeeccccccCCCCchHHH-H
Q 018457 92 LVKVSEEEEARYTQAVCSLEFDKQLGPYTLS-QYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMER-A 169 (355)
Q Consensus 92 l~~~~~~~~~r~~~~l~~~~~d~~L~pYp~~-~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~~~~~~t~~E~-~ 169 (355)
+..+++++.+||++++++++||++|+|||.+ .++.|++||+|||+++|+||.|.+|.++..+++. ..+..|. .
T Consensus 78 l~~~~~~e~~r~~~~l~~~~fd~~L~pYP~~~~~~~W~~LT~~It~~~l~Ri~~~~g~~~~~vdSs-----~~s~eE~~~ 152 (363)
T 3sbt_B 78 YKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQMDKIRKIVRKDENQFSYVDSS-----MTTVQENEL 152 (363)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCSEECCCCTTCCHHHHHHTTCCHHHHHHHSCCTTCSSEEEETT-----CEETTTSTT
T ss_pred eccCcchHHHHHHHHHHhhhhcccccCCCCccchhhHHHHHhhCCHHHHhhccCCCCCeEEEecCC-----CcchhhHHH
Confidence 9876666678999999988889999999998 9999999999999999999999988876555432 1111121 1
Q ss_pred HHHHhhhcccc-ccc-CCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhHHHhHhHHHHHH
Q 018457 170 LDEQLKTSKFT-ASV-DSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAF 247 (355)
Q Consensus 170 l~~~~~~~~~~-~~~-~~~~~~~~~ft~Ip~~~~~~~a~~~eiT~~~~DkS~~L~~vl~~~~~~~~~~lLGELQfaFl~f 247 (355)
+.+.++..... ..+ ...+.+.++||.||.+ ++.+++|+|+|+++|||||+|+++|.+.+.++..+||||||||||++
T Consensus 153 L~~~L~~~~~~~~~~~~~~~~~~l~Ft~i~~k-~~~~~~~~e~T~~~~D~S~~L~~li~~~~~~~~~~lLGELQfaFv~~ 231 (363)
T 3sbt_B 153 LKSSLQKAGSKMEAKNEDDPAHSLNYTVINFK-SREAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNA 231 (363)
T ss_dssp C-----------------CGGGEECCCCCCTT-STTTCCTTCHHHHHHCTHHHHHCCCCCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccccccccCCCCCceeeccccCCC-CcccCChHHHHHHhhhHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence 22222111000 001 1123455999999854 45799999999999999999999998764444599999999999955
Q ss_pred HhhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccCCccCCCchHHHHHH
Q 018457 248 LMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCK 327 (355)
Q Consensus 248 l~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~~~~~~~~~~~~f~~d~~~~s~~nfL~~~l~ 327 (355)
++.+||+||||||+||+|||+|+.+ . |.||.+||++|++||+++| +|| +|+ ++++|||+++|.
T Consensus 232 ~llgn~~s~eQWk~Ll~Llc~s~~~-~---~~l~~~~l~~L~~QL~~~P----------~df-~D~--~~~~~~l~~~L~ 294 (363)
T 3sbt_B 232 MFFGNYGSSLQWHAMIELICSSATV-P---KHMLDKLDEILYYQIKTLP----------EQY-SDI--LLNERVWNICLY 294 (363)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTCSCC-C---HHHHHHHHHHHHHHHHHSC----------GGG-HHH--HCCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHhcchhh-h---HHHHHHHHHHHHHHHHhCC----------HHH-hhh--hcchhHHHHHHH
Confidence 5444499999999999999999985 3 7999999999999999998 478 899 999999999999
Q ss_pred HHH
Q 018457 328 DFF 330 (355)
Q Consensus 328 ~f~ 330 (355)
++|
T Consensus 295 ~~~ 297 (363)
T 3sbt_B 295 SSF 297 (363)
T ss_dssp TST
T ss_pred HHh
Confidence 986
No 2
>2rj2_A F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, lectin, UBL conjugation pathway; 1.70A {Mus musculus} PDB: 1umh_A 2e33_A* 1umi_A*
Probab=13.66 E-value=67 Score=27.81 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.6
Q ss_pred eeEeecCCcceEEEEecCCC
Q 018457 41 KGIKMIPPGVHFVFYSSSSR 60 (355)
Q Consensus 41 ~GIK~IPpG~Hfi~~s~~~~ 60 (355)
+-+++.|||++||+|....+
T Consensus 144 H~F~~Y~~GVR~I~F~h~Gk 163 (185)
T 2rj2_A 144 HTFIDYGPGVRFVRFEHGGQ 163 (185)
T ss_dssp EEECSCCTTEEEEEEEEEEE
T ss_pred EEecCCCCCcEEEEEEEEeE
Confidence 56788899999999976433
No 3
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=10.75 E-value=2.1e+02 Score=18.76 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=21.6
Q ss_pred hhcchHHHHHHHHHHHHHhcCCCC
Q 018457 249 MGQSLEAFLQWKSLVSLLFGCSEA 272 (355)
Q Consensus 249 ~g~s~~sfeQWk~Ll~Ll~~c~~a 272 (355)
+|.+|+.-+...++=.++|+|+..
T Consensus 7 iGEsFg~~~rFQKINqMvnss~r~ 30 (46)
T 2aze_C 7 IGESFGTSEKFQKINQMVCNSDRV 30 (46)
T ss_dssp SSCTTTHHHHHHHHHHHHHCCTTC
T ss_pred hhhhhCchHHHHHHHHHHhhhhHh
Confidence 678899999999999999999876
No 4
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=9.83 E-value=1.8e+02 Score=21.62 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=23.8
Q ss_pred CCeEEEEEeccccccccc---CChHHHHHHHHhhcc
Q 018457 77 PSEVIVRKWDQQEERLVK---VSEEEEARYTQAVCS 109 (355)
Q Consensus 77 ~~ev~V~kWd~~~E~l~~---~~~~~~~r~~~~l~~ 109 (355)
+..+=+|.|+++-+.+.. ++.+|...+++.+++
T Consensus 36 ~pKyDIR~W~pdh~kMgKGITLT~eE~~~Lk~~L~~ 71 (80)
T 3pm7_A 36 PPKFDLREWAPDHEKMGKGITLTNEEFAELSKTIKS 71 (80)
T ss_dssp CCEEEEEEECTTSSSEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccccccCcchhhccCcceeCHHHHHHHHHHHHH
Confidence 344567899999988764 677777777766653
No 5
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=9.12 E-value=1.7e+02 Score=22.65 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHH
Q 018457 252 SLEAFLQWKSLVSLL 266 (355)
Q Consensus 252 s~~sfeQWk~Ll~Ll 266 (355)
.-+.|||||.-+..+
T Consensus 87 akedfeqwkealdvl 101 (135)
T 3dt5_A 87 AKEDFEQWKEALDVL 101 (135)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred eHhhHHHHHHHHHHH
Confidence 347899999877654
No 6
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=8.78 E-value=3.4e+02 Score=16.03 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhcccCCchhhHHHHhhhc
Q 018457 322 LHHLCKDFFALIQDASVVDGDLLTWVSAKH 351 (355)
Q Consensus 322 L~~~l~~f~~~~~~~~~~~~~l~~~~~~~~ 351 (355)
|++-|+.|+.-|.+ .|++-..+-|
T Consensus 2 lrkrlrkfrnkike------klkkigqkiq 25 (32)
T 1lyp_A 2 LRKRLRKFRNKIKE------KLKKIGQKIQ 25 (32)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 67788999888765 5666555443
No 7
>2wq4_A Lectin; LUNG, pathogen, infection, sugar binding protein; HET: SFU; 1.42A {Burkholderia cenocepacia}
Probab=8.41 E-value=1.2e+02 Score=24.44 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=22.0
Q ss_pred HHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEe
Q 018457 5 AALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIK 44 (355)
Q Consensus 5 ~a~~l~~~g~~llll~lP~gt~~GID~~sf~~g~~F~GIK 44 (355)
.|+.=...|-.+++||+|. -|.+|++|-|+-
T Consensus 29 v~k~~~~~~~~~i~lnipt---------pyasgnnfpg~~ 59 (156)
T 2wq4_A 29 VAKAGIRDGKLQVILNVPT---------PYATGNNFPGIY 59 (156)
T ss_dssp HHHHTCCSSEEEEEEEECS---------CEEECSSSCEEE
T ss_pred hhhhcCCCceEEEEEcCCC---------ccccCCCCCCee
Confidence 4455555666778889986 577888997753
No 8
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=8.30 E-value=1.7e+02 Score=22.87 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=15.8
Q ss_pred cccccCCccCCCchHHHHHHHHHHHh
Q 018457 308 SALLDDSWLSADSFLHHLCKDFFALI 333 (355)
Q Consensus 308 ~f~~d~~~~s~~nfL~~~l~~f~~~~ 333 (355)
||+.+. +...|==-++|+.+-..-
T Consensus 62 dyLA~~--vdP~N~EerlLkELW~Va 85 (104)
T 3d0w_A 62 DYLAKH--EEPQNGEEMLLQELWSVA 85 (104)
T ss_dssp HHHHTC--CCCCSHHHHHHHHHHHHC
T ss_pred HHHHHc--CCCCCHHHHHHHHHHHhC
Confidence 455544 667777778888876554
No 9
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus}
Probab=7.91 E-value=2.7e+02 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=20.7
Q ss_pred CEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEec
Q 018457 14 ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSS 57 (355)
Q Consensus 14 ~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~ 57 (355)
|++.|...|.++.|-++. +.+|||.|=+|.=.
T Consensus 20 G~v~f~q~~~gv~v~~~l------------~GL~pG~hGfHIHe 51 (154)
T 2aqm_A 20 GTVVISEAPGGLHFKVNM------------EKLTPGYHGFHVHE 51 (154)
T ss_dssp EEEEEECCTTSEEEEEEE------------CSCCSEEECEEEES
T ss_pred EEEEEEEcCCCEEEEEEE------------ECCCCCcceEEEcc
Confidence 456666666665554443 34799999988843
No 10
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=7.90 E-value=1.1e+03 Score=20.93 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=32.9
Q ss_pred hhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccc
Q 018457 249 MGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQ 297 (355)
Q Consensus 249 ~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~ 297 (355)
-...++.|-||+++++-++-+. +..++.. .+-+++..+ |..+.+
T Consensus 28 R~~r~~dFrq~rdi~eall~~~---l~~~~~~-~k~iri~Qf-LsRI~e 71 (235)
T 3bu8_A 28 RGSRYGDFRQIRDIMQALLVRP---LGKEHTV-SRLLRVMQC-LSRIEE 71 (235)
T ss_dssp HTTCHHHHHHHHHHHHHHTTSC---CCCCHHH-HHHHHHHHH-HHHHHT
T ss_pred HcccHHHHHHHHHHHHHHHhCc---ccccccc-hhHHHHHHH-HHHHHc
Confidence 3468899999999999887543 3455655 777888888 777754
Done!