Query 018457
Match_columns 355
No_of_seqs 167 out of 213
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 15:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018457.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018457hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54m_ f.23.7.1 (M:) Mitochon 20.3 22 0.0016 22.0 1.6 22 240-261 19-42 (43)
2 d1xjva2 b.40.4.3 (A:149-299) P 15.7 31 0.0022 27.0 1.9 19 4-23 80-98 (151)
3 d2voua2 d.16.1.2 (A:164-291) D 15.5 63 0.0046 23.8 3.8 27 45-72 33-59 (128)
4 d1qxna_ c.46.1.3 (A:) Polysulf 14.6 22 0.0016 26.8 0.7 24 1-24 25-48 (137)
5 d1umha_ b.18.1.21 (A:) F-box o 14.0 28 0.002 28.1 1.3 20 41-60 143-162 (184)
6 d1kwga3 c.23.16.5 (A:394-590) 12.2 51 0.0037 26.4 2.4 18 1-18 71-88 (197)
7 g1h6w.2 d.231.1.1 (A:328-396,B 11.9 18 0.0013 25.3 -0.6 15 31-46 60-74 (79)
8 d1ct9a2 d.153.1.1 (A:1-192) As 9.1 71 0.0052 25.2 2.2 16 38-54 166-181 (192)
9 d1jfxa_ c.1.8.8 (A:) Streptomy 8.3 67 0.0049 25.6 1.8 48 26-75 5-65 (217)
10 d1yt8a1 c.46.1.2 (A:107-242) T 8.2 77 0.0056 23.4 2.0 25 1-25 26-50 (136)
No 1
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.35 E-value=22 Score=21.97 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=16.7
Q ss_pred HhHHHHHHH--hhcchHHHHHHHH
Q 018457 240 LQFAFIAFL--MGQSLEAFLQWKS 261 (355)
Q Consensus 240 LQfaFl~fl--~g~s~~sfeQWk~ 261 (355)
|-..|++|| -|..+.-+|++|+
T Consensus 19 Lt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 19 LSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHhcc
Confidence 667899999 5677777788775
No 2
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.72 E-value=31 Score=26.99 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCEEEEccCCC
Q 018457 4 EAALELVKHGATLLLLDVPQ 23 (355)
Q Consensus 4 ~~a~~l~~~g~~llll~lP~ 23 (355)
+.|++ ++.|.++.|-||-.
T Consensus 80 ~~ar~-lK~GdfV~l~NVh~ 98 (151)
T d1xjva2 80 HVARS-LKVGSFLRIYSLHT 98 (151)
T ss_dssp HHHHH-CCTTCEEEEEEEEE
T ss_pred HHHhh-CCCCCEEEEEEEEE
Confidence 35666 67888888877743
No 3
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Probab=15.52 E-value=63 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=18.4
Q ss_pred ecCCcceEEEEecCCCCCCCCCceEEEE
Q 018457 45 MIPPGVHFVFYSSSSRDGKEFSPIIGFF 72 (355)
Q Consensus 45 ~IPpG~Hfi~~s~~~~~g~~~~~R~Gff 72 (355)
-+.||-|+|+|-.+..+| ...+|+.|.
T Consensus 33 ~~g~~~h~v~YpI~g~~~-~~~~~~N~V 59 (128)
T d2voua2 33 GLLDDGHLIAYPIPGREN-AESPRLNFQ 59 (128)
T ss_dssp EEETTEEEEEEEECCSST-TSCCEEEEE
T ss_pred EEcCCceEEEEEecCCCC-CCcceEEEE
Confidence 467999999997766555 334565543
No 4
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}
Probab=14.65 E-value=22 Score=26.82 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.5
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCc
Q 018457 1 MDPEAALELVKHGATLLLLDVPQY 24 (355)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~g 24 (355)
++|+.|++|++++.-++|+|+-.-
T Consensus 25 Isp~e~~~ll~~~~~~~lIDvR~~ 48 (137)
T d1qxna_ 25 LSPKDAYKLLQENPDITLIDVRDP 48 (137)
T ss_dssp ECHHHHHHHHHHCTTSEEEECCCH
T ss_pred EcHHHHHHHHHcCcCEEEEECCcH
Confidence 579999999988766778899654
No 5
>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.04 E-value=28 Score=28.14 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.4
Q ss_pred eeEeecCCcceEEEEecCCC
Q 018457 41 KGIKMIPPGVHFVFYSSSSR 60 (355)
Q Consensus 41 ~GIK~IPpG~Hfi~~s~~~~ 60 (355)
+=+++.|||++||+|....+
T Consensus 143 H~F~~Y~~GvR~I~F~h~Gk 162 (184)
T d1umha_ 143 HTFIDYGPGVRFVRFEHGGQ 162 (184)
T ss_dssp EEECSCCTTCCEEEEEEEEE
T ss_pred EEEcCCCCCcEEEEEEEecc
Confidence 33788999999999976443
No 6
>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}
Probab=12.17 E-value=51 Score=26.41 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=16.2
Q ss_pred CCHHHHHHHHhcCCEEEE
Q 018457 1 MDPEAALELVKHGATLLL 18 (355)
Q Consensus 1 md~~~a~~l~~~g~~lll 18 (355)
|+++.++++.++||+||+
T Consensus 71 ~~~~~l~~~v~~GG~lv~ 88 (197)
T d1kwga3 71 VREEALEAFREAEGPVLF 88 (197)
T ss_dssp CCHHHHHHHHTCSSCEEE
T ss_pred CCHHHHHHHHHCCCEEEE
Confidence 688999999999999876
No 7
>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=11.92 E-value=18 Score=25.32 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=7.7
Q ss_pred ccccccCCCeeeEeec
Q 018457 31 TQMFSVGPSFKGIKMI 46 (355)
Q Consensus 31 ~~sf~~g~~F~GIK~I 46 (355)
..+|.+ |+++|+++|
T Consensus 60 g~tF~l-PDlRG~~~~ 74 (79)
T g1h6w.2 60 SSNPGL-PDMRSLNYI 74 (79)
T ss_dssp SSSBBC-CBCCCCEEE
T ss_pred CCcccC-CCCCCceeE
Confidence 334444 666665543
No 8
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.06 E-value=71 Score=25.18 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=12.6
Q ss_pred CCeeeEeecCCcceEEE
Q 018457 38 PSFKGIKMIPPGVHFVF 54 (355)
Q Consensus 38 ~~F~GIK~IPpG~Hfi~ 54 (355)
+-++.|+.+||| |+++
T Consensus 166 ~~~~~i~~~~pG-~~l~ 181 (192)
T d1ct9a2 166 PVCRTIKEFPAG-SYLW 181 (192)
T ss_dssp TTCSEEEECCTT-EEEE
T ss_pred HhhCCeEEcCCc-cEEE
Confidence 457889999999 6654
No 9
>d1jfxa_ c.1.8.8 (A:) Streptomyces lysozyme {Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]}
Probab=8.34 E-value=67 Score=25.65 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=34.3
Q ss_pred EEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCC-------------CCCceEEEEEEc
Q 018457 26 LFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGK-------------EFSPIIGFFIDA 75 (355)
Q Consensus 26 ~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~~~~~g~-------------~~~~R~Gff~~~ 75 (355)
..|||-..|+..-.|.-+|. .|+.|++..++...+. ..+..+|.||+.
T Consensus 5 i~GIDVS~~qg~id~~~vk~--~gi~fviikat~G~~~~D~~~~~n~~~A~~aGl~~G~Yhf~ 65 (217)
T d1jfxa_ 5 VQGIDVSHWQGSINWSSVKS--AGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFA 65 (217)
T ss_dssp SEEEEECGGGCSCCHHHHHH--TTCCEEEEEEEETTTEECTTHHHHHHHHHHTTCEEEEEEEC
T ss_pred CEEEEeCCcCCCCCHHHHHH--CCCcEEEEEEecCCCccChHHHHHHHHHHHcCCeEEEEEEe
Confidence 46999999998778877775 7999999965321110 135788988875
No 10
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.22 E-value=77 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhcCCEEEEccCCCce
Q 018457 1 MDPEAALELVKHGATLLLLDVPQYT 25 (355)
Q Consensus 1 md~~~a~~l~~~g~~llll~lP~gt 25 (355)
++|+.++++++.+.-++|+|+-+..
T Consensus 26 Is~~el~~~l~~~~~~~liDvR~~~ 50 (136)
T d1yt8a1 26 LAAEEVQALLDARAEAVILDARRFD 50 (136)
T ss_dssp ECHHHHHHHHHTTCSEEEEECSCHH
T ss_pred cCHHHHHHHHhcCCCcEEEEcCChh
Confidence 4688899999888888899997654
Done!