Query 018458
Match_columns 355
No_of_seqs 155 out of 1344
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5E-101 1E-105 711.8 25.5 342 3-349 97-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 3.1E-89 6.6E-94 677.8 27.2 352 3-355 99-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1.1E-87 2.4E-92 666.3 27.3 344 3-346 99-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 1.5E-86 3.3E-91 658.9 25.9 334 3-344 97-430 (445)
5 cd02186 alpha_tubulin The tubu 100.0 3.2E-85 6.9E-90 648.1 26.7 337 3-339 98-434 (434)
6 PLN00220 tubulin beta chain; P 100.0 2.8E-85 6E-90 651.2 26.1 345 3-355 97-445 (447)
7 cd02187 beta_tubulin The tubul 100.0 3.4E-84 7.4E-89 639.6 26.6 329 3-339 96-424 (425)
8 cd02188 gamma_tubulin Gamma-tu 100.0 3.8E-83 8.2E-88 631.2 24.6 328 3-336 98-431 (431)
9 PLN00222 tubulin gamma chain; 100.0 9.2E-83 2E-87 631.6 26.9 338 3-346 100-448 (454)
10 PTZ00387 epsilon tubulin; Prov 100.0 1.1E-81 2.3E-86 624.5 27.0 326 3-340 98-450 (465)
11 cd02190 epsilon_tubulin The tu 100.0 2.8E-80 6.2E-85 603.0 25.2 314 3-339 66-379 (379)
12 cd06059 Tubulin The tubulin su 100.0 3E-77 6.6E-82 584.7 25.9 327 3-338 56-382 (382)
13 cd02189 delta_tubulin The tubu 100.0 6.4E-77 1.4E-81 590.7 25.1 323 3-337 93-445 (446)
14 KOG1374 Gamma tubulin [Cytoske 100.0 6.5E-74 1.4E-78 531.8 22.3 335 3-343 100-443 (448)
15 KOG1376 Alpha tubulin [Cytoske 100.0 5.6E-66 1.2E-70 477.4 14.0 308 4-333 99-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 2E-62 4.3E-67 455.7 13.6 297 9-344 58-354 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.2E-52 2.7E-57 403.7 21.0 273 3-285 56-328 (328)
18 cd06060 misato Human Misato sh 100.0 3.1E-31 6.7E-36 264.1 21.9 318 4-338 118-493 (493)
19 smart00864 Tubulin Tubulin/Fts 100.0 3.2E-31 7E-36 236.2 9.4 140 3-150 48-192 (192)
20 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.1E-29 2.4E-34 230.4 6.0 125 3-129 91-215 (216)
21 PF03953 Tubulin_C: Tubulin C- 99.9 1.6E-25 3.4E-30 186.3 9.2 126 167-297 1-126 (126)
22 cd02202 FtsZ_type2 FtsZ is a G 99.9 2.4E-25 5.2E-30 215.0 9.9 159 8-176 68-233 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 1.3E-24 2.8E-29 206.1 9.7 208 12-241 64-273 (303)
24 TIGR00065 ftsZ cell division p 99.9 4E-23 8.7E-28 199.0 8.9 145 11-164 80-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 2.3E-22 4.9E-27 191.4 9.0 146 12-165 64-209 (304)
26 PRK13018 cell division protein 99.9 9.8E-22 2.1E-26 190.2 9.6 209 9-240 89-299 (378)
27 PF14881 Tubulin_3: Tubulin do 99.9 1.6E-21 3.4E-26 171.3 9.9 134 3-148 39-180 (180)
28 PRK09330 cell division protein 99.8 3.6E-20 7.8E-25 179.5 7.3 147 10-164 75-221 (384)
29 KOG2530 Members of tubulin/Fts 99.7 1.7E-17 3.8E-22 158.6 8.0 145 4-160 171-323 (483)
30 COG0206 FtsZ Cell division GTP 99.2 2E-11 4.3E-16 116.5 7.8 148 9-165 72-219 (338)
31 smart00865 Tubulin_C Tubulin/F 98.5 3.9E-08 8.5E-13 80.1 1.4 114 152-296 1-119 (120)
32 PF13809 Tubulin_2: Tubulin li 96.2 0.017 3.7E-07 56.1 7.8 62 38-99 149-218 (345)
33 PF06908 DUF1273: Protein of u 73.9 8.5 0.00018 33.8 5.7 84 18-111 27-111 (177)
34 PF12953 DUF3842: Domain of un 70.7 4.3 9.2E-05 33.6 2.8 28 47-74 6-34 (131)
35 PRK14484 phosphotransferase ma 67.9 4.8 0.0001 33.2 2.7 43 19-64 41-83 (124)
36 PLN02847 triacylglycerol lipas 67.2 6.8 0.00015 40.7 4.1 62 9-74 224-287 (633)
37 cd00741 Lipase Lipase. Lipase 65.9 13 0.00027 31.2 5.0 65 9-77 1-65 (153)
38 cd00006 PTS_IIA_man PTS_IIA, P 65.4 20 0.00043 29.0 5.9 32 19-50 40-71 (122)
39 PF03610 EIIA-man: PTS system 64.0 7.9 0.00017 31.1 3.2 32 19-50 40-71 (116)
40 cd00519 Lipase_3 Lipase (class 56.6 13 0.00029 33.4 3.7 60 8-71 100-159 (229)
41 TIGR00824 EIIA-man PTS system, 56.1 18 0.00039 29.2 4.0 33 19-51 41-73 (116)
42 PRK09461 ansA cytoplasmic aspa 49.0 53 0.0011 31.8 6.7 92 16-114 65-156 (335)
43 COG1528 Ftn Ferritin-like prot 47.3 13 0.00029 32.1 2.0 53 283-341 92-146 (167)
44 PRK13660 hypothetical protein; 46.3 79 0.0017 27.9 6.7 79 54-145 58-136 (182)
45 PF03283 PAE: Pectinacetyleste 46.1 42 0.0009 32.9 5.5 50 11-67 132-183 (361)
46 PF00710 Asparaginase: Asparag 44.5 81 0.0018 30.1 7.2 89 16-111 56-145 (313)
47 COG0572 Udk Uridine kinase [Nu 43.3 30 0.00065 31.4 3.7 27 41-68 9-35 (218)
48 TIGR02364 dha_pts dihydroxyace 43.1 21 0.00045 29.4 2.5 30 19-49 41-71 (125)
49 cd00411 Asparaginase Asparagin 40.8 83 0.0018 30.3 6.6 90 16-112 62-153 (323)
50 PF02879 PGM_PMM_II: Phosphogl 38.4 35 0.00075 26.6 3.0 28 36-63 19-46 (104)
51 PF01764 Lipase_3: Lipase (cla 37.9 37 0.0008 27.5 3.3 54 9-67 36-91 (140)
52 PF01713 Smr: Smr domain; Int 37.7 1.2E+02 0.0027 22.4 5.9 51 21-74 10-66 (83)
53 PLN02408 phospholipase A1 35.0 80 0.0017 31.0 5.5 62 17-82 179-242 (365)
54 TIGR00519 asnASE_I L-asparagin 32.0 1.2E+02 0.0025 29.5 6.1 93 16-115 61-158 (336)
55 PF13508 Acetyltransf_7: Acety 31.8 55 0.0012 23.6 3.1 23 49-71 39-61 (79)
56 PHA03159 hypothetical protein; 31.7 3.4 7.3E-05 34.0 -3.8 24 52-78 81-104 (160)
57 cd01709 RT_like_1 RT_like_1: A 31.6 65 0.0014 31.4 4.2 50 48-97 268-318 (346)
58 TIGR02153 gatD_arch glutamyl-t 31.0 1.6E+02 0.0034 29.4 6.9 90 16-111 122-211 (404)
59 smart00870 Asparaginase Aspara 30.4 1.6E+02 0.0035 28.3 6.8 78 34-115 76-155 (323)
60 KOG3178 Hydroxyindole-O-methyl 29.7 55 0.0012 31.8 3.3 38 30-72 169-206 (342)
61 PF09370 TIM-br_sig_trns: TIM- 29.0 31 0.00066 32.3 1.4 32 21-60 2-33 (268)
62 KOG0735 AAA+-type ATPase [Post 27.5 1.3E+02 0.0029 32.4 5.8 68 45-115 436-508 (952)
63 PF06858 NOG1: Nucleolar GTP-b 27.4 1.5E+02 0.0033 21.0 4.4 35 39-73 17-53 (58)
64 PRK14318 glmM phosphoglucosami 27.1 2.2E+02 0.0049 28.5 7.4 86 19-112 158-245 (448)
65 COG1171 IlvA Threonine dehydra 27.1 2.6E+02 0.0056 27.4 7.4 34 40-78 178-211 (347)
66 PRK14317 glmM phosphoglucosami 26.7 2.4E+02 0.0052 28.5 7.6 89 18-112 168-258 (465)
67 COG1109 {ManB} Phosphomannomut 26.4 2.7E+02 0.0059 28.1 7.9 90 18-112 158-250 (464)
68 PLN03013 cysteine synthase 26.0 28 0.00061 35.0 0.7 29 41-72 284-312 (429)
69 PF08259 Periviscerokin: Periv 25.7 32 0.00068 15.9 0.4 7 162-168 4-10 (11)
70 PTZ00489 glutamate 5-kinase; P 25.3 2E+02 0.0043 26.8 6.2 49 61-111 87-135 (264)
71 COG4427 Uncharacterized protei 25.3 68 0.0015 30.1 2.9 37 20-69 5-41 (350)
72 KOG1376 Alpha tubulin [Cytoske 25.3 62 0.0014 31.6 2.8 78 244-321 64-150 (407)
73 PF14824 Sirohm_synth_M: Siroh 24.5 1.1E+02 0.0024 18.7 2.8 23 38-65 4-26 (30)
74 PRK15088 PTS system mannose-sp 24.5 97 0.0021 29.9 4.0 32 19-50 42-73 (322)
75 COG4474 Uncharacterized protei 24.3 1.8E+02 0.0039 25.4 5.1 71 5-80 10-82 (180)
76 COG0031 CysK Cysteine synthase 24.3 45 0.00097 31.8 1.7 73 42-119 174-253 (300)
77 TIGR01732 tiny_TM_bacill conse 23.4 57 0.0012 19.1 1.3 13 46-58 1-13 (26)
78 cd03089 PMM_PGM The phosphoman 23.1 2.4E+02 0.0053 28.1 6.8 43 18-62 145-187 (443)
79 TIGR01455 glmM phosphoglucosam 22.8 3E+02 0.0064 27.5 7.4 87 19-112 153-242 (443)
80 PRK04183 glutamyl-tRNA(Gln) am 22.7 2.6E+02 0.0056 28.1 6.7 89 16-111 135-223 (419)
81 cd05801 PGM_like3 This bacteri 22.6 1.6E+02 0.0034 30.4 5.4 46 17-62 188-234 (522)
82 PRK07831 short chain dehydroge 22.1 53 0.0011 29.8 1.7 20 45-64 22-41 (262)
83 TIGR02072 BioC biotin biosynth 22.1 2.4E+02 0.0052 24.7 6.0 59 4-69 2-60 (240)
84 PRK09542 manB phosphomannomuta 21.9 3.6E+02 0.0078 27.0 7.8 89 17-112 144-237 (445)
85 PF02353 CMAS: Mycolic acid cy 21.9 2.1E+02 0.0045 26.8 5.6 63 6-75 30-93 (273)
86 PLN02371 phosphoglucosamine mu 21.8 2E+02 0.0043 30.1 6.1 73 36-112 261-337 (583)
87 PF05970 PIF1: PIF1-like helic 21.6 2.4E+02 0.0051 27.5 6.2 40 36-78 20-59 (364)
88 PF04695 Pex14_N: Peroxisomal 21.6 32 0.00068 28.7 0.1 27 304-333 25-51 (136)
89 COG0159 TrpA Tryptophan syntha 21.5 2.3E+02 0.0051 26.5 5.7 77 24-119 161-242 (265)
90 smart00852 MoCF_biosynth Proba 21.4 1.4E+02 0.0029 24.4 3.9 42 17-65 42-83 (135)
91 PF00891 Methyltransf_2: O-met 21.3 2.7E+02 0.0058 25.0 6.2 34 31-69 93-126 (241)
92 PF07693 KAP_NTPase: KAP famil 21.1 3.1E+02 0.0067 25.6 6.8 54 23-79 5-61 (325)
93 PF08659 KR: KR domain; Inter 21.1 62 0.0013 27.9 1.8 21 45-66 5-25 (181)
94 COG1086 Predicted nucleoside-d 21.1 64 0.0014 33.5 2.1 24 45-69 255-278 (588)
95 TIGR00177 molyb_syn molybdenum 21.0 1.5E+02 0.0032 24.7 4.1 38 19-63 53-90 (144)
96 smart00467 GS GS motif. Aa app 20.8 73 0.0016 19.4 1.5 13 46-59 11-23 (30)
97 PRK14315 glmM phosphoglucosami 20.3 3.5E+02 0.0075 27.1 7.3 89 18-112 156-246 (448)
98 cd03087 PGM_like1 This archaea 20.2 3.3E+02 0.0071 27.1 7.1 43 19-62 146-188 (439)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=4.9e-101 Score=711.83 Aligned_cols=342 Identities=58% Similarity=1.017 Sum_probs=333.5
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+|||+.|+++.+.++|.|||++|.||.||||+++||+|||||||+|+.|+|.|++||||+.+.+++|+|.++.+
T Consensus 97 AgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~S 176 (443)
T COG5023 97 AGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVS 176 (443)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
+++|||||++|+++++.|++|+++++||++|+++|.+.|++.+|+|.++|++||++|+++|.++||||++|.||+++.+|
T Consensus 177 d~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~n 256 (443)
T COG5023 177 DVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTN 256 (443)
T ss_pred cceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||+|++||+.++|+|++......+++.++.++++++|+++|||.+|+|++++|++++.++||+++++++++++.+++.|
T Consensus 257 LVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k 336 (443)
T COG5023 257 LVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSK 336 (443)
T ss_pred CCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
++++|++|+|++|++++|..||. ..++.+.+++||+|+|+|...|+++.++|++||+||||||||.++||||+||
T Consensus 337 ~~~~Fv~W~P~~~~vai~~~~P~-----~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EF 411 (443)
T COG5023 337 RTIQFVEWCPTGFKVAICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEF 411 (443)
T ss_pred CcccccccCCcceeeeeeccCCc-----ccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccch
Confidence 99999999999999999999983 2346789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHcccCCCCCCC
Q 018458 323 SEAREDLAALEKDYEEVGAESAEGEDG 349 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~~~~~~~~~~~ 349 (355)
.||++.+.+|+++|+++++++.+++++
T Consensus 412 sEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 412 SEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred hhHHHHHHHHHHHHHHhccccccchhh
Confidence 999999999999999999998888776
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.1e-89 Score=677.83 Aligned_cols=352 Identities=94% Similarity=1.429 Sum_probs=333.8
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+|||+.|+++.++++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||++.+.+++|+|++..+
T Consensus 99 agNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~~ 178 (450)
T PLN00221 99 AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 178 (450)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccccceeeEeeCCCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999997667
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|++++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+++||||+++.|++++++|
T Consensus 179 ~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~s~RF~g~ln~dl~~l~~n 258 (450)
T PLN00221 179 TAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLRFDGALNVDITEFQTN 258 (450)
T ss_pred CCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccccccccccCCHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....+++++|.+|++++|++++++..++|+.++||++++++||++.++++.+++.+++.+
T Consensus 259 LvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~ 338 (450)
T PLN00221 259 LVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338 (450)
T ss_pred cCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887666678899999999999999999999999999999999999999999999999998888
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
+.+.|++|+|+++++++|+++|..+|+..+.+.++++++++|+|+|..+|+++.++|++||+||||||||+++||||+||
T Consensus 339 ~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF 418 (450)
T PLN00221 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 418 (450)
T ss_pred CCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHH
Confidence 88999999999999999999988777776777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHcccCCCCCCCCCCCCC
Q 018458 323 SEAREDLAALEKDYEEVGAESAEGEDGDEGDEY 355 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~ 355 (355)
.||+++|++|+++|+++..+..+++.| |++||
T Consensus 419 ~EA~~~l~~li~~Y~~~~~~~~~~~~~-~~~~~ 450 (450)
T PLN00221 419 SEAREDLAALEKDYEEVGAESAEGEGD-EGEEY 450 (450)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccc-ccccC
Confidence 999999999999999997666655444 47776
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.1e-87 Score=666.33 Aligned_cols=344 Identities=92% Similarity=1.417 Sum_probs=327.9
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||++.+++++|+|+...+
T Consensus 99 agnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~~~ 178 (448)
T PTZ00335 99 AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVS 178 (448)
T ss_pred CCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccceeeEEecCCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998667
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++||||+++.|++++++|
T Consensus 179 ~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~n 258 (448)
T PTZ00335 179 TAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDLTEFQTN 258 (448)
T ss_pred CcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhcccccccccccccCCCHHHHhcc
Confidence 99999999999999999999999999999999999998998999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....++.++|.+|++++|++++++..++|+.++||++++++||++.+.++.+.+.+++.+
T Consensus 259 LvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~ 338 (448)
T PTZ00335 259 LVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTK 338 (448)
T ss_pred ccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999987666778999999999999999999999999999999999999999999999999999888
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
+.+.|++|+|+++++++|+++|..+|+..+.+.++++++++|+|+|..+|+++.+||++||+||||||||+++||||+||
T Consensus 339 ~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF 418 (448)
T PTZ00335 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 418 (448)
T ss_pred CCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHH
Confidence 88999999999999999999988777777767789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHcccCCCC
Q 018458 323 SEAREDLAALEKDYEEVGAESAEG 346 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~~~~~~~~ 346 (355)
.||+++|++|+++|+++..+..+|
T Consensus 419 ~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 419 SEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred HHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999996544444
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.5e-86 Score=658.89 Aligned_cols=334 Identities=40% Similarity=0.791 Sum_probs=320.8
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+|||+.|+++.++++|+|||++|+||++|||+++||++||||||+|++++|.|+|+||++.+.+++|+|++..+
T Consensus 97 agNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~ 176 (445)
T PTZ00010 97 AGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVS 176 (445)
T ss_pred CccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998767
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|++++|.+++|++++|||++|.++|.+.++++.|+|.++|++||++|+++|+++||||.++.|++++.+|
T Consensus 177 ~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~Rfpg~ln~dl~~l~tn 256 (445)
T PTZ00010 177 DTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVN 256 (445)
T ss_pred ccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccceecCCcccccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....++.++|.+|++++|++++++..++|++++|+|+++++||++.++++.+++..++.+
T Consensus 257 LvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~ 336 (445)
T PTZ00010 257 LVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNK 336 (445)
T ss_pred HhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999987666788899999999999999999999999999999999999999999999999988888
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
+++.|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++.+||++||+||||||||+++||||+||
T Consensus 337 ~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~eGmee~ef 408 (445)
T PTZ00010 337 NSSYFVEWIPNNIKSSVCDIPPK--------GLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEF 408 (445)
T ss_pred CCccCccccCCCEEEeecCcCCc--------CccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhccCCcHHHH
Confidence 88999999999999999999875 4568899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHcccCC
Q 018458 323 SEAREDLAALEKDYEEVGAESA 344 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~~~~~~ 344 (355)
.||+++|++|+++|+++.....
T Consensus 409 ~EA~~~l~~li~~Y~~~~~~~~ 430 (445)
T PTZ00010 409 TEAESNMNDLVSEYQQYQDATV 430 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999886663
No 5
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=3.2e-85 Score=648.09 Aligned_cols=337 Identities=84% Similarity=1.343 Sum_probs=323.1
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+||++.|+++.++++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||++++.+++|+|+...+
T Consensus 98 ~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~ 177 (434)
T cd02186 98 AANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVS 177 (434)
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|+++||+|.++.|+++++++
T Consensus 178 ~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~~rf~g~~~~~l~~l~~n 257 (434)
T cd02186 178 TAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLRFDGALNVDLNEFQTN 257 (434)
T ss_pred CCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccceecCCccCCCHHHHHhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....++.++|.+|++++|+++++|..++++.++||++++++||++.++++.+++.+++.+
T Consensus 258 LvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~ 337 (434)
T cd02186 258 LVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTK 337 (434)
T ss_pred ccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987766778899999999999999999999999999999999999999999999999888878
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
+.+.|++|+|+++++++|++||..+|+..+.+.++++++++|+|+|.++|+++.++|++||+||||||||+++||||+||
T Consensus 338 ~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~rkAflh~Y~~~Gmee~ef 417 (434)
T cd02186 338 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEF 417 (434)
T ss_pred CCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhhcchhhhhcCcCCchHHH
Confidence 88999999999999999999988777766767789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHH
Q 018458 323 SEAREDLAALEKDYEEV 339 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~ 339 (355)
.||+++|++|+++|+++
T Consensus 418 ~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 418 SEAREDLAALEKDYEEV 434 (434)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999863
No 6
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.8e-85 Score=651.21 Aligned_cols=345 Identities=40% Similarity=0.791 Sum_probs=323.3
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+|||+.|+++.++++|+|||++|+||++|||+++||++||||||+|++|++.|+|+||++.+++++|+|++..+
T Consensus 97 agnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~ 176 (447)
T PLN00220 97 AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS 176 (447)
T ss_pred CCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEEECCCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998678
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|.++|++||+.|+++|+++||||.++.++++++++
T Consensus 177 ~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~slRFpG~ln~~l~~l~~n 256 (447)
T PLN00220 177 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVN 256 (447)
T ss_pred CCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhhccCCcCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||+.++++|+.+.....+++++|.++++++++.++++.++++++++|+++++++||++.++++.+++.+++.+
T Consensus 257 LVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~ 336 (447)
T PLN00220 257 LIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNK 336 (447)
T ss_pred hCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999886666678899999999999999999889999999999999999999999999999888878
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
+.+.|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++.+||++||+||||||||+++||||+||
T Consensus 337 ~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~~Gmee~ef 408 (447)
T PLN00220 337 NSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408 (447)
T ss_pred CCCccccccCCCEEEeecCCCCC--------CcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcccCCchHHH
Confidence 88999999999999999999875 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHcccC----CCCCCCCCCCCC
Q 018458 323 SEAREDLAALEKDYEEVGAES----AEGEDGDEGDEY 355 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~~~~~----~~~~~~~~~~~~ 355 (355)
.||+++|++|+++|+++.... .|.+||||++||
T Consensus 409 ~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~~~ 445 (447)
T PLN00220 409 TEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEY 445 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccchhc
Confidence 999999999999999887543 344444444554
No 7
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.4e-84 Score=639.65 Aligned_cols=329 Identities=41% Similarity=0.807 Sum_probs=315.7
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+||++.|+++.++++|+||+++|+||++|||+++||++||||||+|++++|.|+|+||++.+++++|+|+...+
T Consensus 96 agnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~ 175 (425)
T cd02187 96 AGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVS 175 (425)
T ss_pred CCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEEecCCCcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998656
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++||||.+|.|++++++|
T Consensus 176 ~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~Rfpg~~n~dl~~l~~n 255 (425)
T cd02187 176 DTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVN 255 (425)
T ss_pred cceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeeecCCccccCHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....++.++|.+|++++|++++++..++|++++|+++++++||++.++++.+.+.+++.+
T Consensus 256 LvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~ 335 (425)
T cd02187 256 MVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNK 335 (425)
T ss_pred cCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987666678899999999999999999889999999999999999999999999999998888
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
..+.|++|+|+++++++|.++|. +.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||
T Consensus 336 ~~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~G~ee~ef 407 (425)
T cd02187 336 NSSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 407 (425)
T ss_pred CCCcCCCcCCCCEeeeecCCCCC--------CcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhccCCchHHH
Confidence 88999999999999999998775 3468899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHH
Q 018458 323 SEAREDLAALEKDYEEV 339 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~ 339 (355)
.||+++|++|+++|+++
T Consensus 408 ~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 408 TEAESNMNDLVSEYQQY 424 (425)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999976
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=3.8e-83 Score=631.20 Aligned_cols=328 Identities=34% Similarity=0.601 Sum_probs=311.8
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC-
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV- 81 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~- 81 (355)
.+||||+||+ .|+++.++++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||++.+++++|+|++..
T Consensus 98 agnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~ 176 (431)
T cd02188 98 AGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDES 176 (431)
T ss_pred ccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccC
Confidence 4799999965 69999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhc
Q 018458 82 STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT 161 (355)
Q Consensus 82 ~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~ 161 (355)
+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|.++|++||++|+++|+++||+|.+|.|++++.+
T Consensus 177 s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~t 256 (431)
T cd02188 177 SDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTLRYPGYMNNDLISLIA 256 (431)
T ss_pred CCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCcccceecCCccCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccccchh-hhhccccCHHHHHHhhcCCCCCCcccCC-CCCccccccccccCcCChhhHHHHHHhh
Q 018458 162 NLVPYPRIHFMLSSYAPVISAE-KAFHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAAVATI 239 (355)
Q Consensus 162 ~L~p~P~~~fl~~~~~Pl~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~ls~~~~~RG~~~~~~~~~~~~~~ 239 (355)
||||||++||++++++|+++.. ...++..+|.+|++++|++.++|..+++ ++++|+|+++++||++.++++.+++.++
T Consensus 257 nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~l 336 (431)
T cd02188 257 SLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRI 336 (431)
T ss_pred hcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999876 4677889999999999999999999999 8999999999999999999999999999
Q ss_pred hccCccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCc-
Q 018458 240 KTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME- 318 (355)
Q Consensus 240 ~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gme- 318 (355)
+.+..+.|++|+|+++++++|.++|...+ +.++++++++|+|+|.++|+++.+||++||+||||||||+++|||
T Consensus 337 k~~~~~~f~~W~p~~~~~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krAflH~Y~~eGme~ 411 (431)
T cd02188 337 RERRLANFIPWGPASIQVALSKKSPYVPT-----AHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFS 411 (431)
T ss_pred HhhccccCcccCCCCEEEEEeccCCccCC-----CCceeEEEecCChHHHHHHHHHHHHHHHHHhhCchhhhccCcCccc
Confidence 88888889999999999999999886443 345789999999999999999999999999999999999999999
Q ss_pred --hhhHHHHHHhHHHHHHHH
Q 018458 319 --EGEFSEAREDLAALEKDY 336 (355)
Q Consensus 319 --e~eF~ea~~~l~~l~~~Y 336 (355)
|+||.||+++|++|+++|
T Consensus 412 ~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 412 DNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred cchhHHHHHHHHHHHHHHhC
Confidence 999999999999999998
No 9
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=9.2e-83 Score=631.59 Aligned_cols=338 Identities=29% Similarity=0.522 Sum_probs=315.6
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCC-C
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ-V 81 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~-~ 81 (355)
.+||||+||+ .|+++.++++|+|||++|.||++|||+++||++||||||+|++|+|.|+|+||++.+++++|+|++. .
T Consensus 100 agnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~ 178 (454)
T PLN00222 100 AGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMET 178 (454)
T ss_pred cccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEecCCCccc
Confidence 5799999955 7999999999999999999999999999999999999999999999999999999999999999863 4
Q ss_pred CccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhc
Q 018458 82 STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT 161 (355)
Q Consensus 82 ~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~ 161 (355)
+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+++||||.+|.|++++.+
T Consensus 179 ~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~ 258 (454)
T PLN00222 179 SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLA 258 (454)
T ss_pred CCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcccccCCCCccCCCHHHHhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccccchh-hhhccccCHHHHHHhhcCCCCCCcccCCCC-----CccccccccccCcCChhhHHHH
Q 018458 162 NLVPYPRIHFMLSSYAPVISAE-KAFHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAA 235 (355)
Q Consensus 162 ~L~p~P~~~fl~~~~~Pl~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----~~~ls~~~~~RG~~~~~~~~~~ 235 (355)
||||||++||++++++|+.... ...++..++.++++++|++++++..++|+. ++|||+++++||++.++++.++
T Consensus 259 nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~ 338 (454)
T PLN00222 259 SLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKS 338 (454)
T ss_pred hcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999997642 344677889999999999999999998887 9999999999999999999999
Q ss_pred HHhhhccCccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccC
Q 018458 236 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGE 315 (355)
Q Consensus 236 ~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~ 315 (355)
+.+++.++.+.|++|+|+++++++|.++|...+ +.+.++++++|+|+|..+|+++.+||++||+||||||||+++
T Consensus 339 ~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~~~ 413 (454)
T PLN00222 339 LQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKF 413 (454)
T ss_pred HHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhCccceeecCC
Confidence 999988888999999999999999998876422 345789999999999999999999999999999999999999
Q ss_pred CCc----hhhHHHHHHhHHHHHHHHHHHcccCCCC
Q 018458 316 GME----EGEFSEAREDLAALEKDYEEVGAESAEG 346 (355)
Q Consensus 316 Gme----e~eF~ea~~~l~~l~~~Y~~~~~~~~~~ 346 (355)
||+ ++||.||+++|++|+++|+++...+.+|
T Consensus 414 G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 414 PMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred CcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 993 8999999999999999999988666655
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.1e-81 Score=624.46 Aligned_cols=326 Identities=31% Similarity=0.601 Sum_probs=309.7
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||++.+++++|+|+. .+
T Consensus 98 aGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~~~~~~V~P~~-~~ 176 (465)
T PTZ00387 98 AGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPSA-VD 176 (465)
T ss_pred CCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCceeeeEecCCC-CC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999986 57
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCC---------------------------CCcchhhHHH
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER---------------------------PTYTNLNRLV 135 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~---------------------------~~~~~~N~~i 135 (355)
++++++||++|+|++|.+++|+++++||++|.++|.+.++++. ++|+++|++|
T Consensus 177 ~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iI 256 (465)
T PTZ00387 177 DVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNNIV 256 (465)
T ss_pred cceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccccccccccccccccccccccHHHHHHHH
Confidence 8899999999999999999999999999999999988777663 8899999999
Q ss_pred HHHhhcCCceeecCCCCccchhhhhccccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCc
Q 018458 136 SQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGK 215 (355)
Q Consensus 136 a~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 215 (355)
|++|+++|+++||+|.+|.|++++.+||||||++||++++++|+.+.....++..+|.+|++++|+..++|..++|++++
T Consensus 257 a~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~k 336 (465)
T PTZ00387 257 AQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGK 336 (465)
T ss_pred HhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCCHHHHHHHHhcccCeeeecCCCcch
Confidence 99999999999999999999999999999999999999999999887666778899999999999999999999999999
Q ss_pred cccccccccCcCChhhHHHHHHhhhccCccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHH
Q 018458 216 YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 295 (355)
Q Consensus 216 ~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i 295 (355)
|||+++++||++.+.++.+.+.+++. ++.|++|+|+++++++|.++|. +.++++++++|+|+|..+|+++
T Consensus 337 ~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~--------~~~~s~~~lsNst~I~~~f~~i 406 (465)
T PTZ00387 337 YLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPL--------GQPYSLLCLANNCCIRNKFESM 406 (465)
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCC--------CCceeEEEecCChHHHHHHHHH
Confidence 99999999999999999998888864 4889999999999999999875 3468899999999999999999
Q ss_pred HHHHHHhhcccceeeecccCCCchhhHHHHHHhHHHHHHHHHHHc
Q 018458 296 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 340 (355)
Q Consensus 296 ~~~~~~m~~~kAylH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~ 340 (355)
++||++||+||||||||+ +|||++||.||+++|++|+++|++++
T Consensus 407 ~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~ 450 (465)
T PTZ00387 407 LERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQ 450 (465)
T ss_pred HHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 79999999999999999999999997
No 11
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=2.8e-80 Score=603.04 Aligned_cols=314 Identities=33% Similarity=0.686 Sum_probs=299.2
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+||+..|+++.++++|+|||++|+||++|||+++||++||||||+|+.|+|.|+|+||++.+++++|+|+.. +
T Consensus 66 aGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~-~ 144 (379)
T cd02190 66 AGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD-D 144 (379)
T ss_pred CCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCC-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999985 7
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++||||.++.|++++.+|
T Consensus 145 ~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~n 212 (379)
T cd02190 145 DVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMN 212 (379)
T ss_pred CceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceeecccccccchhhhccc
Confidence 88999999999999999999999999999998 689999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....++..++.+|++++++++++|..++++.++|+++++++||+..+.++.+.+.+++.+
T Consensus 213 LvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~ 292 (379)
T cd02190 213 LVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK 292 (379)
T ss_pred cccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999987666678899999999999999999999999999999999999999999999988888665
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
..|++|+|+++++++|.++|. +.++++++++|+|+|..+|++++++|++||+||||||||+++||||+||
T Consensus 293 --~~fv~W~p~~~~~~~~~~~~~--------~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~ee~ef 362 (379)
T cd02190 293 --LKFVKWNQEGWKIGLCSVPPV--------GHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDF 362 (379)
T ss_pred --CcCcCcCCCcEEEeecccCCC--------CcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCcHHHH
Confidence 679999999999999998775 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHH
Q 018458 323 SEAREDLAALEKDYEEV 339 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~~ 339 (355)
.||+++|++++++|+++
T Consensus 363 ~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 363 TEALESISNLIDEYDYL 379 (379)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999874
No 12
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=3e-77 Score=584.72 Aligned_cols=327 Identities=46% Similarity=0.835 Sum_probs=308.5
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
-++|||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.++|.|+|+||++.+++++|+|+...+
T Consensus 56 ~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~ 135 (382)
T cd06059 56 SGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGS 135 (382)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
++++++||++|++.+|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|++|.++.|+++++++
T Consensus 136 ~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~ 215 (382)
T cd06059 136 SNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATN 215 (382)
T ss_pred CccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhh
Confidence 58999999999999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|||||++||++++++|+++.....++..++.+++++++++.+++..++++.++|+++++++||+...+++.+.+.+++.+
T Consensus 216 LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~ 295 (382)
T cd06059 216 LVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNK 295 (382)
T ss_pred cCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987666677889999999999999999999999999999999999999999999988888766
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhH
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 322 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF 322 (355)
..+. +|+|+++++++|.++|. .+.++++++++|+|+|.++|++++++|++||+||||||||+++||||+||
T Consensus 296 ~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~ee~ef 366 (382)
T cd06059 296 LNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEF 366 (382)
T ss_pred cccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCchHHH
Confidence 5444 89999999999998874 13468899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHH
Q 018458 323 SEAREDLAALEKDYEE 338 (355)
Q Consensus 323 ~ea~~~l~~l~~~Y~~ 338 (355)
.||+++|++++++|++
T Consensus 367 ~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 367 TEAESSLEDLIQSYQE 382 (382)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999973
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=6.4e-77 Score=590.69 Aligned_cols=323 Identities=25% Similarity=0.436 Sum_probs=296.7
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+||||+||+..|+++.|+++|+|||++|+||+++||+++||++||||||+|++|+|.|+|+||++.+++++|+|+. .+
T Consensus 93 agnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~-~~ 171 (446)
T cd02189 93 SGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYT-TG 171 (446)
T ss_pred CccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeeccCCC-CC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999986 58
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeec-C-------CCCcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF-D-------GALNV 154 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~-~-------~~~~~ 154 (355)
++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||+.|+++|+|.|+ + |..+.
T Consensus 172 ~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r~~~~~~~~~~~~~~~ 251 (446)
T cd02189 172 EVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTGSNGALAGRSTN 251 (446)
T ss_pred cchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhhccCcccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999987 5 33688
Q ss_pred chhhhhccccCCCcccccccccccccchhhhhccccCHHHHHHhhc---CCCCCCcc-------------------cCCC
Q 018458 155 DVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAF---EPSSMMAK-------------------CDPR 212 (355)
Q Consensus 155 ~l~~l~~~L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~-------------------~~~~ 212 (355)
+++++.++|||||++||++++++|+++.....++..+|.+|+++++ .+++.+.. ++++
T Consensus 252 ~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (446)
T cd02189 252 PLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTH 331 (446)
T ss_pred CHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhccccccccccccccccccccccccccccCCc
Confidence 9999999999999999999999999987766788899999999976 45544433 4677
Q ss_pred CCccccccccccCcCChhhHHHHHHhhhccCccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHH
Q 018458 213 HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVF 292 (355)
Q Consensus 213 ~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l 292 (355)
.++||++++++||+...+++...+ ++.+.|++|+|++++++++.++|.. .+.++++++++|+|+|..+|
T Consensus 332 ~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~------~~~~~s~~~l~Nst~i~~~l 400 (446)
T cd02189 332 FNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSF------SKYEKSVTLVSNSQTIIDPL 400 (446)
T ss_pred ccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCc------CCcceeEEEEeCCchHHHHH
Confidence 899999999999998777776443 3567899999999999999887652 13568999999999999999
Q ss_pred HHHHHHHHHhhcccceeeecccCCCchhhHHHHHHhHHHHHHHHH
Q 018458 293 SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 337 (355)
Q Consensus 293 ~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 337 (355)
+++++||++||+||||||||+++||||+||.||+++|++|+++|+
T Consensus 401 ~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 401 DNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred HHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999996
No 14
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=6.5e-74 Score=531.79 Aligned_cols=335 Identities=31% Similarity=0.564 Sum_probs=311.5
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCC-C
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ-V 81 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~-~ 81 (355)
.|||||.|| .+|+++.|+|+|.|+|++|.||++.||+++||++||||||+||.|+|.|+|+||||.+.+++|||... .
T Consensus 100 AGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~s 178 (448)
T KOG1374|consen 100 AGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDES 178 (448)
T ss_pred ccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCc
Confidence 589999995 56999999999999999999999999999999999999999999999999999999999999999874 4
Q ss_pred CccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhc
Q 018458 82 STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT 161 (355)
Q Consensus 82 ~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~ 161 (355)
++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+++|+|+++|.+||+.|++.|.++||||+++.++..|..
T Consensus 179 sdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~ 258 (448)
T KOG1374|consen 179 SDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYA 258 (448)
T ss_pred cceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccccchhhh--hccccCHHHHHHhhcCCCCCCcccCC---CCCccccccccccCcCChhhHHHHH
Q 018458 162 NLVPYPRIHFMLSSYAPVISAEKA--FHEQLSVAEITNSAFEPSSMMAKCDP---RHGKYMACCLMYRGDVVPKDVNAAV 236 (355)
Q Consensus 162 ~L~p~P~~~fl~~~~~Pl~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~ls~~~~~RG~~~~~~~~~~~ 236 (355)
.|+|+|++||++++++|++..... .++.-++.+.++.++.++++|.+..+ .+..|+++..++.|.+.+..+..++
T Consensus 259 ~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~si~n~iqg~vdp~~v~~s~ 338 (448)
T KOG1374|consen 259 SLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYISILNIIQGEVDPTQVHKSL 338 (448)
T ss_pred hcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHhHHhhhhcccCHHHHHHHH
Confidence 999999999999999999987543 34777888999999999998887655 3347899999999999999999999
Q ss_pred HhhhccCccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCC
Q 018458 237 ATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 316 (355)
Q Consensus 237 ~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~G 316 (355)
.+++.++-..|++|.|.++++++....|.+.+ .++.|+.|++|+|+|+..|++++.+|++|++||||||+|.++|
T Consensus 339 ~r~~dr~~a~f~~w~~~si~val~k~spy~~~-----~~~vSglml~N~t~i~~lfe~~~~qydklrk~~AFld~y~k~~ 413 (448)
T KOG1374|consen 339 QRIRDRKLANFIPWGPASIQVALSKKSPYVQR-----AHRVSGLMLANSTSIVSLFERILGQYDKLRKKRAFLDQYRKFD 413 (448)
T ss_pred HHHHhcccccCCCCCCHHHHhhhhcCCCcccc-----ccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99988888999999999999998887776543 3678999999999999999999999999999999999999999
Q ss_pred Cchh---hHHHHHHhHHHHHHHHHHHcccC
Q 018458 317 MEEG---EFSEAREDLAALEKDYEEVGAES 343 (355)
Q Consensus 317 mee~---eF~ea~~~l~~l~~~Y~~~~~~~ 343 (355)
|+++ ||.|+++.+++++++|..+.+..
T Consensus 414 if~~~~~efdesr~ivq~lv~eY~a~~~~~ 443 (448)
T KOG1374|consen 414 IFEDDLDEFDESREIVQQLVDEYHAAEQPD 443 (448)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9888 99999999999999999886543
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=5.6e-66 Score=477.44 Aligned_cols=308 Identities=81% Similarity=1.302 Sum_probs=297.7
Q ss_pred CCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCc
Q 018458 4 YSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 83 (355)
Q Consensus 4 ~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~ 83 (355)
.||||+|||+.|+++++..+++||+.++.|..+|||.+|||.|||||||+++.++|.+..+|+|+..+.++++|.+..+.
T Consensus 99 annyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiypapqvSt 178 (407)
T KOG1376|consen 99 ANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVST 178 (407)
T ss_pred hhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhhhhccccccccccCccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhccc
Q 018458 84 SVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 163 (355)
Q Consensus 84 ~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L 163 (355)
.+++|||++|+.+...+++|+.+++||++++.+|.+++.+..|+|.++|++|+++++++|.++||.|.+|.||.++.+||
T Consensus 179 ~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnl 258 (407)
T KOG1376|consen 179 AVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLRFDGALNVDLTEFQTNL 258 (407)
T ss_pred cccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhcccccccccCCcccccHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhccC
Q 018458 164 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKR 243 (355)
Q Consensus 164 ~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~ 243 (355)
|||| + ++|+.+.....++++++.+++...|+..++|.+|||++|+|+++++++||++.|+++..+++.+|.+.
T Consensus 259 Vpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~r 331 (407)
T KOG1376|consen 259 VPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 331 (407)
T ss_pred CCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhccCCcCcccchHHHHhhhhcc
Confidence 9999 2 89999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhHH
Q 018458 244 TIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFS 323 (355)
Q Consensus 244 ~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF~ 323 (355)
+++|++ .++|++++++.++++||++|+|+|++.+.++..+|+.||.||||||||.++||||+||.
T Consensus 332 t~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwyvgegmeegef~ 396 (407)
T KOG1376|consen 332 TIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 396 (407)
T ss_pred ccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeeccCCCccccchh
Confidence 998876 34678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHH
Q 018458 324 EAREDLAALE 333 (355)
Q Consensus 324 ea~~~l~~l~ 333 (355)
||.+.|..|.
T Consensus 397 ea~ed~a~le 406 (407)
T KOG1376|consen 397 EAREDLAALE 406 (407)
T ss_pred hhhhhHHhhc
Confidence 9999988764
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=2e-62 Score=455.73 Aligned_cols=297 Identities=38% Similarity=0.778 Sum_probs=283.0
Q ss_pred cCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccch
Q 018458 9 CDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEP 88 (355)
Q Consensus 9 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~ 88 (355)
+|||+.|..+.|. .||++||||++||++||||||.|++++..|+++||.....+++|.|++. ++++++|
T Consensus 58 ~ghy~~ga~~~ds----------~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvep 126 (369)
T KOG1375|consen 58 KGHYTEGAELVDS----------SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEP 126 (369)
T ss_pred ccceeeeeeehhc----------ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecc
Confidence 8999999888776 8999999999999999999999999999999999999999999999986 8999999
Q ss_pred hhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhccccCCCc
Q 018458 89 YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPR 168 (355)
Q Consensus 89 yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~P~ 168 (355)
||+.|++.+|++++|..+++||++|.++|.+.+++..++ ++|..+||+|++|.|+.++..|++|+|+
T Consensus 127 yna~ls~~ql~en~~et~cidNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~ 193 (369)
T KOG1375|consen 127 YNATLSVHQLVENADETFCIDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPR 193 (369)
T ss_pred cccccchhhhhcCCCcccccccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcc
Confidence 999999999999999999999999999999999888777 8999999999999999999999999999
Q ss_pred ccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhccCccccc
Q 018458 169 IHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFV 248 (355)
Q Consensus 169 ~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~ 248 (355)
+||+.++++|++......++.+++.++++++|+.+|++..|+ ||+++.++|| +.+++++....+++|...+|+
T Consensus 194 lhffm~g~~pl~s~~~~q~~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~ 266 (369)
T KOG1375|consen 194 LHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFV 266 (369)
T ss_pred hhhccccccccccccccccccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhh
Confidence 999999999999988888899999999999999999999887 9999999999 779999999999999999999
Q ss_pred cCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhHHHHHHh
Q 018458 249 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED 328 (355)
Q Consensus 249 ~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF~ea~~~ 328 (355)
+|+|+++|+++|.+||. +...+.+.++|+|+|...|+++.++|..||+||||||||+++||||+||+||..+
T Consensus 267 ~wiP~~vktavCdipp~--------glkms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~ 338 (369)
T KOG1375|consen 267 EWIPNNVKTAVCDIPPG--------GLKMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 338 (369)
T ss_pred hhcccccceeeccCCCc--------cccccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHH
Confidence 99999999999999987 5678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCC
Q 018458 329 LAALEKDYEEVGAESA 344 (355)
Q Consensus 329 l~~l~~~Y~~~~~~~~ 344 (355)
+++++.+|+++.++..
T Consensus 339 ~ndLi~eyqQy~~~~~ 354 (369)
T KOG1375|consen 339 MNDLVSEYQQYQQDAT 354 (369)
T ss_pred HHHHHHHHHHhhhhcc
Confidence 9999999999954433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.2e-52 Score=403.71 Aligned_cols=273 Identities=42% Similarity=0.794 Sum_probs=249.6
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.++|||+||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|||+||++.+++++|+|+...+
T Consensus 56 ag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~ 135 (328)
T cd00286 56 AGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG 135 (328)
T ss_pred CCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999997533
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTN 162 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~ 162 (355)
+++++||+++++++|.+++|+++++||++|.++|.+.++...+.|.++|++||++|+++|.++||+|.++.|++++.++
T Consensus 136 -~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~ 214 (328)
T cd00286 136 -VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSEN 214 (328)
T ss_pred -chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCccccchHHHHhhh
Confidence 6899999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhcc
Q 018458 163 LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 242 (355)
Q Consensus 163 L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~ 242 (355)
|+|+|++||++++++|+.......+...++.++++++++.++++..+++..++++++++++||..+.+++.+.+..++.+
T Consensus 215 l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~ 294 (328)
T cd00286 215 LVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPR 294 (328)
T ss_pred cCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 99999999999999999875555566778999999999999888888888899999999999999989998888887766
Q ss_pred CccccccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCc
Q 018458 243 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 285 (355)
Q Consensus 243 ~~~~f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~ 285 (355)
..+. +|+|++++++++.++|. . +.+.++++++|+
T Consensus 295 ~~~~--~w~~~~~~~~~~~~~~~-~------~~~~~~~~l~Ns 328 (328)
T cd00286 295 TSHL--SWSPPGIKVGVSPTPPA-S------EHKVSALLLSNS 328 (328)
T ss_pred CCcC--CcCCCCEeEeecCCCCC-C------CcCeEEEEeccC
Confidence 5444 89999999999988764 1 235778999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.98 E-value=3.1e-31 Score=264.10 Aligned_cols=318 Identities=19% Similarity=0.256 Sum_probs=215.8
Q ss_pred CCCcccCccc-chHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC-
Q 018458 4 YSKLCCDDVS-VGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV- 81 (355)
Q Consensus 4 ~~n~a~G~~~-~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~- 81 (355)
|.+|..|.-. .+.+..|+++|+||+++|+||++||||+++|++||| ||+|+.++|.|+|||||+.++++++.|....
T Consensus 118 fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~ 196 (493)
T cd06060 118 FEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPD 196 (493)
T ss_pred ccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccc
Confidence 4445555432 256788999999999999999999999999999999 7999999999999999999999999997532
Q ss_pred ---CccccchhhhHHhhhhhhhccceeeEechh-HHHHHh-----hhccCCCCCCcchhhHHHHHHhhcCCceeecCCCC
Q 018458 82 ---STSVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDIC-----RRSLDIERPTYTNLNRLVSQVISSLTASLRFDGAL 152 (355)
Q Consensus 82 ---~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~-~l~~~~-----~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~ 152 (355)
.+.++++||++|++.+|.+++|+++|+.-. .+|... ...+..+.....+..+++|.+|.++|.|+|..+..
T Consensus 197 ~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~ 276 (493)
T cd06060 197 ASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP 276 (493)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC
Confidence 256899999999999999999999999854 222211 12234445567789999999999999999998654
Q ss_pred ccchhhhhccccCCCcccccccc-cccccchhhhhccccCHHHHHHhhcCCCC-CCcccC-CCCCccccccccccCcCCh
Q 018458 153 NVDVTEFQTNLVPYPRIHFMLSS-YAPVISAEKAFHEQLSVAEITNSAFEPSS-MMAKCD-PRHGKYMACCLMYRGDVVP 229 (355)
Q Consensus 153 ~~~l~~l~~~L~p~P~~~fl~~~-~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~-~~~~~~ls~~~~~RG~~~~ 229 (355)
.+|.+++..|.+..| |+...+ -.|+... ..-++.++...+-...- ..+.++ +....+....+++||-...
T Consensus 277 -~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~-----~~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~ 349 (493)
T cd06060 277 -SSLSGLCDDLSFSGR-KVVAAGLALPFPMV-----GGQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEE 349 (493)
T ss_pred -ccHHHHHHHhhhccc-hhhhhccCCCCCCC-----CCCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChh
Confidence 478889888886554 544432 2344321 12234444444321111 112332 2345778888999995410
Q ss_pred h-------------------hHHHHHHhhhccCccccccCCCCCc-eeeeecCC-CccCCCCC-----c-----------
Q 018458 230 K-------------------DVNAAVATIKTKRTIQFVDWCPTGF-KCGINYQP-PTVVPGGD-----L----------- 272 (355)
Q Consensus 230 ~-------------------~~~~~~~~~~~~~~~~f~~w~p~~~-~~~~~~~~-p~~~~~~~-----~----------- 272 (355)
+ .+.+.+....... + |..+ ...++..| |...|... +
T Consensus 350 ~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~------~-~~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~ 422 (493)
T cd06060 350 RLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQ------Y-PGSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSS 422 (493)
T ss_pred hccccccccccccccchhcCCHHHHHHHHHHhc------c-CCcchhheecCCCCCCCCCCchhhccccCCCccccCCCc
Confidence 0 0111111110000 0 1000 11111111 11011100 0
Q ss_pred ---cc--ce--eeeeeccCchhHHHHHHHHHHHHHHhhcccceeeecccCCCchhhHHHHHHhHHHHHHHHHH
Q 018458 273 ---AK--VQ--RAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 338 (355)
Q Consensus 273 ---~~--~~--~s~~~l~N~t~i~~~l~~i~~~~~~m~~~kAylH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 338 (355)
++ +. -.++-|.+++++.+.|+.+..++.++--+| .|.|...|+|+|||.|++++|.++.++|++
T Consensus 423 ~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 423 RGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred ccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 00 01 123447899999999999999999999999 889999999999999999999999999963
No 19
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.97 E-value=3.2e-31 Score=236.25 Aligned_cols=140 Identities=34% Similarity=0.610 Sum_probs=131.7
Q ss_pred CCCCcccCccc-----chHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecC
Q 018458 3 EYSKLCCDDVS-----VGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 77 (355)
Q Consensus 3 ~~~n~a~G~~~-----~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P 77 (355)
-++||++||++ .|+++.++++|+||+++|+| ++|+++||++||||||+++.+++.++ +||+.. ++++|+|
T Consensus 48 ~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P 122 (192)
T smart00864 48 AGNNWTRGLGAGADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKP 122 (192)
T ss_pred ccccccccCCCCCChHHHHHHHHHHHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEe
Confidence 36899999998 89999999999999999999 89999999999999999999999999 999876 9999999
Q ss_pred CCCCCccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCC
Q 018458 78 SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 150 (355)
Q Consensus 78 ~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 150 (355)
+ ..|.++++||+++++++|.+++|.++++||++|.+.|.+.+.+ .+.|.++|++||+.|+++|.++||||
T Consensus 123 ~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 123 F--VFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred E--eecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5 3688999999999999999999999999999999999877766 58999999999999999999999986
No 20
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.96 E-value=1.1e-29 Score=230.44 Aligned_cols=125 Identities=39% Similarity=0.747 Sum_probs=119.0
Q ss_pred CCCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 3 EYSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 3 ~~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
-++||++||+..|+++.++++|+||+++|+||.++||+++||+|||||||+++.|++.||++||++++++++|+|+. .
T Consensus 91 ~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~-~- 168 (216)
T PF00091_consen 91 SGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFS-S- 168 (216)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CG-G-
T ss_pred ccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeeccccccc-c-
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999994 3
Q ss_pred ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcc
Q 018458 83 TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 129 (355)
Q Consensus 83 ~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~ 129 (355)
++++++||++++|++|.+++|+++++||++|.++|.+.+++++|+|+
T Consensus 169 e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 169 EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 88999999999999999999999999999999999999998888775
No 21
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.92 E-value=1.6e-25 Score=186.31 Aligned_cols=126 Identities=59% Similarity=1.020 Sum_probs=113.3
Q ss_pred CcccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccCcCChhhHHHHHHhhhccCccc
Q 018458 167 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ 246 (355)
Q Consensus 167 P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 246 (355)
|++||++++++|++...+...++.++.+|++++|+++++|.+|++++|+|+|+++++||+++++|+.+++.+++.+.+++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988778899999999999999999999999999999999999999999999999999999998899
Q ss_pred cccCCCCCceeeeecCCCccCCCCCcccceeeeeeccCchhHHHHHHHHHH
Q 018458 247 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDH 297 (355)
Q Consensus 247 f~~w~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~ 297 (355)
|++|+|+++|+++|.+||...+.+ ++++++|+|+|+|.+.|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999866543 5789999999999999999864
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=2.4e-25 Score=214.99 Aligned_cols=159 Identities=24% Similarity=0.332 Sum_probs=142.8
Q ss_pred ccCcccchHHHHHHHHHHHHhhhhhccC--ccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccc
Q 018458 8 CCDDVSVGKEIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 85 (355)
Q Consensus 8 a~G~~~~g~~~~~~~~d~iR~~~E~cD~--lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~ 85 (355)
|.|.+..|+++.++..|.||+++|.||. +|+|++++|++||||||+++.+++.++++|| +++++++++|+.. +..
T Consensus 68 aG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~~--eg~ 144 (349)
T cd02202 68 VGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPARE--EGE 144 (349)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCCC--CCc
Confidence 4455567999999999999999999997 9999999999999999999999999999999 7899999999974 568
Q ss_pred cchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeec-----CCCCccchhhhh
Q 018458 86 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF-----DGALNVDVTEFQ 160 (355)
Q Consensus 86 ~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~-----~~~~~~~l~~l~ 160 (355)
+++||+.+++++|.+.+|++++|||++|.+.|.. + .+.|.++|++||+.|..++.+.|| +|.+|.|++|+.
T Consensus 145 ~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~ 220 (349)
T cd02202 145 RYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVI 220 (349)
T ss_pred hhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHH
Confidence 9999999999999999999999999999998642 2 389999999999999999999999 999999999999
Q ss_pred ccccCCCccccccccc
Q 018458 161 TNLVPYPRIHFMLSSY 176 (355)
Q Consensus 161 ~~L~p~P~~~fl~~~~ 176 (355)
++|.+. .+...++
T Consensus 221 ~~L~~~---G~~~iG~ 233 (349)
T cd02202 221 NTLSGG---GFATIGY 233 (349)
T ss_pred HHhccC---CeEEEEE
Confidence 999764 3444444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.91 E-value=1.3e-24 Score=206.12 Aligned_cols=208 Identities=15% Similarity=0.259 Sum_probs=154.1
Q ss_pred ccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhh
Q 018458 12 VSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 91 (355)
Q Consensus 12 ~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~ 91 (355)
+..|++..++++|+||+.+|.||. |++++++|||||||+++.+++.++++|+ ..+++.++|+ ..|..+++||+
T Consensus 64 ~~~G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--~~~~vvt~Pf--~~Eg~~~~~NA 136 (303)
T cd02191 64 PELGAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--LTVAVVTLPF--SDEGGIRMLNA 136 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC--CEEEEEeCCc--ccCCccchhhH
Confidence 345679999999999999999994 8999999999999999999999999986 3444444454 46788999999
Q ss_pred HHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhccccCCCcccc
Q 018458 92 VLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 171 (355)
Q Consensus 92 ~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~P~~~f 171 (355)
.+++++|.+++|+++++||++|.+.|.+ +.+. +.|+.+|++||+.+.++|..+|+||.+|.|++|+.+.|- -+..-+
T Consensus 137 ~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~-~~G~a~ 213 (303)
T cd02191 137 AEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMD-GGGVAM 213 (303)
T ss_pred HHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhc-cCCeEE
Confidence 9999999999999999999999999976 7765 699999999999999999999999999999999987663 333333
Q ss_pred cccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccC--cCChhhHHHHHHhhhc
Q 018458 172 MLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG--DVVPKDVNAAVATIKT 241 (355)
Q Consensus 172 l~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG--~~~~~~~~~~~~~~~~ 241 (355)
+-.+.+. ..-...+.+++.++.+ .+..++....+ ...+.+.| +.+..++.+..+.++.
T Consensus 214 ig~g~~~---------g~~~~~~a~~~Al~~p-ll~~~~~~~A~--~~Lv~i~g~~~l~~~e~~~~~~~i~~ 273 (303)
T cd02191 214 VGYGSED---------VTNRATEAVRKAALGP-LLLPCEIEGAE--GALLVMAGPPDLNLKEIERVRKWLEE 273 (303)
T ss_pred EEEEEec---------CchHHHHHHHHHHhCC-CCCCCCcccCC--EEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2221111 1123455555555432 11223333322 12233444 4556777776665543
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.88 E-value=4e-23 Score=198.99 Aligned_cols=145 Identities=14% Similarity=0.340 Sum_probs=126.1
Q ss_pred cccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhh
Q 018458 11 DVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYN 90 (355)
Q Consensus 11 ~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN 90 (355)
.+..|++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+.+.+ .+++ +..+++.++|+. .|..+++||
T Consensus 80 ~~~~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~a-ke~~-~l~vaivt~Pf~--~Eg~~r~~n 152 (349)
T TIGR00065 80 NPEIGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIA-KELG-ALTVAVVTKPFK--FEGLKRRKK 152 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHH-HHcC-CCEEEEEeCCcc--ccchhhHHH
Confidence 44568999999999999999999986 9999999999999988665555 4565 445555556664 578999999
Q ss_pred hHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcccc
Q 018458 91 SVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLV 164 (355)
Q Consensus 91 ~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~ 164 (355)
+.+++++|.+++|+++++||++|.+.|.+ +.+. ..|..+|.+|++.+.++|.++|+||.+|.|+.|+.+-|-
T Consensus 153 A~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 153 AEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMS 224 (349)
T ss_pred HHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHh
Confidence 99999999999999999999999999977 7775 599999999999999999999999999999999987663
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.87 E-value=2.3e-22 Score=191.40 Aligned_cols=146 Identities=14% Similarity=0.326 Sum_probs=127.6
Q ss_pred ccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhh
Q 018458 12 VSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 91 (355)
Q Consensus 12 ~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~ 91 (355)
+..|++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+.+..+ +|+. ..+++.+.|+. .|..+++||+
T Consensus 64 ~~~g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~-~~~~vvt~Pf~--~Eg~~~~~nA 136 (304)
T cd02201 64 PEVGRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA-LTVAVVTKPFS--FEGKKRMRQA 136 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC-CEEEEEeCCcc--ccchhHHHHH
Confidence 3456788999999999999999985 99999999999999998766555 5653 55666666765 5778999999
Q ss_pred HHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhccccC
Q 018458 92 VLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVP 165 (355)
Q Consensus 92 ~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p 165 (355)
.++++.|.+++|+++++||++|.+.|.+.+.+.. .|..+|.+|++.+.++|.++|++|.+|.|++|+.+.|-.
T Consensus 137 ~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 137 EEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKN 209 (304)
T ss_pred HHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhcc
Confidence 9999999999999999999999999977777764 899999999999999999999999999999999988754
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.86 E-value=9.8e-22 Score=190.21 Aligned_cols=209 Identities=20% Similarity=0.306 Sum_probs=157.1
Q ss_pred cCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccch
Q 018458 9 CDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEP 88 (355)
Q Consensus 9 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~ 88 (355)
-|.+..|++..++..|.||+.+|.||. |++++|+|||||||+++.|++.+++ ++ ...+++++.|+. .+...+.
T Consensus 89 G~dp~~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~--~EG~~r~ 161 (378)
T PRK13018 89 GGDPEVGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK--FEGRARM 161 (378)
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc--cccHhHH
Confidence 445667888999999999999999997 7999999999999999999999987 44 456788888986 4678899
Q ss_pred hhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhccccCCCc
Q 018458 89 YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPR 168 (355)
Q Consensus 89 yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~P~ 168 (355)
.|+.+++.+|.+++|+++++||++|.++| ..+.+. ..|+.+|.+|++.+.++|.++|++|.+|.|++|+.+-|- ...
T Consensus 162 ~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~-~~G 238 (378)
T PRK13018 162 QKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMK-GGG 238 (378)
T ss_pred HHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhc-cCC
Confidence 99999999999999999999999999999 666666 589999999999999999999999999999999987663 232
Q ss_pred ccccccccccccchhhhhccccCHHHHHHhhcCCCCCCcccCCCCCccccccccccC--cCChhhHHHHHHhhh
Q 018458 169 IHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG--DVVPKDVNAAVATIK 240 (355)
Q Consensus 169 ~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG--~~~~~~~~~~~~~~~ 240 (355)
.-++-.+.+. ......+.+++.+..+ ++.++....+ ..++.+.| ++...++.+....++
T Consensus 239 ~a~iG~G~a~---------g~~r~~~Av~~Al~sp--LL~~di~~A~--~~Lv~I~g~~~l~l~ev~~~~~~i~ 299 (378)
T PRK13018 239 VAMMGVGEAK---------GQNRAMEAVRAALANP--LLDVDYRGAK--GALVHITGGPDLTLKEANEAASRIT 299 (378)
T ss_pred EEEEEEEEec---------CCcHHHHHHHHHHhCC--CcCCChhhhc--eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 2222211111 1123455555555433 3344443322 22233444 445567766655554
No 27
>PF14881 Tubulin_3: Tubulin domain
Probab=99.86 E-value=1.6e-21 Score=171.26 Aligned_cols=134 Identities=24% Similarity=0.365 Sum_probs=107.7
Q ss_pred CCCCcccCcccchH-HHHHHHHHH-HHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcce-EeeeecCCC
Q 018458 3 EYSKLCCDDVSVGK-EIVDLCLDR-IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK-LGFTVYPSP 79 (355)
Q Consensus 3 ~~~n~a~G~~~~g~-~~~~~~~d~-iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~-~~~~v~P~~ 79 (355)
.|++|..|.-.... +..++++|+ ||+.+|+||.+||||++.++.+|+| |+++.++|.|+|||||+.+ +++++.+..
T Consensus 39 ~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 39 PFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred CcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 46778888655543 345667775 9999999999999999999999998 9999999999999999996 666665543
Q ss_pred CCC-----ccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeec
Q 018458 80 QVS-----TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF 148 (355)
Q Consensus 80 ~~~-----~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~ 148 (355)
... ....+.+|.++++.+|.+.+++++|+.... +..+..+..+++|.+|.++|.|+|+
T Consensus 118 ~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 118 SSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 211 122457899999999999999999997200 2245569999999999999999984
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.80 E-value=3.6e-20 Score=179.53 Aligned_cols=147 Identities=16% Similarity=0.349 Sum_probs=127.9
Q ss_pred CcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchh
Q 018458 10 DDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPY 89 (355)
Q Consensus 10 G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~y 89 (355)
|.+..|++..++..|.||+.+|.||.+ ++++++|||||||.++ ++..+..+++ +++++|+|.+...|..+++|
T Consensus 75 ~~pe~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g---~ltvaVvt~PF~fEG~~r~~ 147 (384)
T PRK09330 75 ANPEVGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG---ILTVAVVTKPFSFEGKKRMK 147 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC---CcEEEEEecCccccchhHHH
Confidence 455678999999999999999999987 9999999999999999 5556667776 45555555544468899999
Q ss_pred hhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhcccc
Q 018458 90 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLV 164 (355)
Q Consensus 90 N~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~ 164 (355)
|+.++|..|.+++|.+|+++|+.|.+++.+.+.+. ..|..+|.+|++.+.+++..+++||.+|.|+.|+.+-|-
T Consensus 148 nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 148 QAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred HHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHh
Confidence 99999999999999999999999999997766666 599999999999999999999999999999999987664
No 29
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.71 E-value=1.7e-17 Score=158.63 Aligned_cols=145 Identities=22% Similarity=0.335 Sum_probs=116.2
Q ss_pred CCCcccCcccchH-HHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC-
Q 018458 4 YSKLCCDDVSVGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV- 81 (355)
Q Consensus 4 ~~n~a~G~~~~g~-~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~- 81 (355)
|++|.-|+-.+-. .+.+++.|+||.++|+||.+|||++..++.+|+| |+++.++|.|+|||+++.++++++.|.+..
T Consensus 171 ~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~v~tw~~~~~p~s~ 249 (483)
T KOG2530|consen 171 FDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKAVFTWGHNPRPFSQ 249 (483)
T ss_pred hhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCceeccccCCCCCCc
Confidence 4667777655433 3789999999999999999999999999999997 999999999999999999999999986532
Q ss_pred Ccc---ccc---hhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccc
Q 018458 82 STS---VVE---PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVD 155 (355)
Q Consensus 82 ~~~---~~~---~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~ 155 (355)
++. +-. ..|.++++.+|.+.|++++|+.--. .++ ...+..+++|.++.++|.|.|..++.+..
T Consensus 250 ~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ds~tlptr~~ssS~~~ 318 (483)
T KOG2530|consen 250 DFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFDSITLPTRLISSSNLR 318 (483)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhcccccccceecchhHHH
Confidence 222 222 5789999999999999999994211 221 34578899999999999999998875544
Q ss_pred hhhhh
Q 018458 156 VTEFQ 160 (355)
Q Consensus 156 l~~l~ 160 (355)
+.++.
T Consensus 319 ~~d~l 323 (483)
T KOG2530|consen 319 QRDTL 323 (483)
T ss_pred HHHHH
Confidence 44443
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.23 E-value=2e-11 Score=116.46 Aligned_cols=148 Identities=16% Similarity=0.248 Sum_probs=126.8
Q ss_pred cCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccch
Q 018458 9 CDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEP 88 (355)
Q Consensus 9 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~ 88 (355)
-+....|++..++..+.|++.++..| =++++.++|||||+|..+.+.+.+++ .+...++++++|+.. |...+.
T Consensus 72 Ga~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~--EG~~r~ 144 (338)
T COG0206 72 GANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF--EGSPRM 144 (338)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh--cCchHH
Confidence 45567789999999999999998777 45899999999999999999999988 477788899999874 667788
Q ss_pred hhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhHHHHHHhhcCCceeecCCCCccchhhhhccccC
Q 018458 89 YNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVP 165 (355)
Q Consensus 89 yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p 165 (355)
-|+..++..|.+++|.+|+++|+.|.+... ...+. ..|...|.++++.+.+++..+--||.+|.|+.|+.+-+-.
T Consensus 145 ~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~~-~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 145 ENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPIA-EAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccHH-HHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 999999999999999999999999998764 22222 4688889999999999998888889999999999887765
No 31
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.49 E-value=3.9e-08 Score=80.10 Aligned_cols=114 Identities=25% Similarity=0.414 Sum_probs=83.8
Q ss_pred CccchhhhhccccCCCcccccccccccccchhhhhccccCHHHHHH--hhcCCCCCCcccCCCCCccccccccccCcCCh
Q 018458 152 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 229 (355)
Q Consensus 152 ~~~~l~~l~~~L~p~P~~~fl~~~~~Pl~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 229 (355)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .+++.++++..+++.. ++++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4679999999999999 899999998762 23456666666 7787776666555443 666654 6678
Q ss_pred hhHHHHHHhhhccCc-cccccCCC-CCceeeeecCCCccCCCCCcccceeeeeeccC-chhHHHHHHHHH
Q 018458 230 KDVNAAVATIKTKRT-IQFVDWCP-TGFKCGINYQPPTVVPGGDLAKVQRAVCMISN-STSVAEVFSRID 296 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~i~ 296 (355)
+++.+++..++.+.. ..|+.|.| ..++++ .+.++++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~------------------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG------------------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC------------------CCcEEEEEEecccCccccccC
Confidence 899998888876655 77899988 433211 34577899 999999888753
No 32
>PF13809 Tubulin_2: Tubulin like
Probab=96.17 E-value=0.017 Score=56.14 Aligned_cols=62 Identities=24% Similarity=0.213 Sum_probs=43.6
Q ss_pred ceeEEEecCCCCCCCchHHHHHHhhhhh-----CCcceEeeeecCCCCCCc---cccchhhhHHhhhhhh
Q 018458 38 GFLVFNAVGGGTGSGLGSLLLERLSVDY-----GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLL 99 (355)
Q Consensus 38 gf~~~~sl~GGtGSG~gs~lle~l~dey-----p~~~~~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~ 99 (355)
-+.|+.|++||||||+---++-.||+.+ ....+..+.++|....+. .....-|+.=+|.+|.
T Consensus 149 ~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 149 NVFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 3688899999999999888888888866 445688899999843211 1233456655555554
No 33
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=73.86 E-value=8.5 Score=33.77 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhhccCcccee-EEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhh
Q 018458 18 IVDLCLDRIRKLADNCTGLQGFL-VFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 96 (355)
Q Consensus 18 ~~~~~~d~iR~~~E~cD~lqgf~-~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~ 96 (355)
+...+.+.|++++|+ |+. |+.+.+-|+- -.++.++-.|+.+||.. -..+|+|+...+..- +-..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~i--kL~~v~Pf~~q~~~W--~~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEI--KLALVLPFENQGNNW--NEANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT---EEEEEESSB-TTTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhhe--EEEEEEcccchhhcC--CHHHHHHHH
Confidence 344455566666663 432 2233333332 23566677789999974 446788987533211 112334466
Q ss_pred hhhhccceeeEechh
Q 018458 97 SLLEHTDVAVLLDNE 111 (355)
Q Consensus 97 ~l~e~~d~~i~~dN~ 111 (355)
.|.+.||-++.+..+
T Consensus 97 ~il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 97 SILEQADFVVVVSER 111 (177)
T ss_dssp HHHHH-SEEEESSSS
T ss_pred HHHHhCCEEEEccCC
Confidence 777888888887654
No 34
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=70.68 E-value=4.3 Score=33.60 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCCCCCchHHHHHHhhhhhCC-cceEeee
Q 018458 47 GGTGSGLGSLLLERLSVDYGK-KSKLGFT 74 (355)
Q Consensus 47 GGtGSG~gs~lle~l~deyp~-~~~~~~~ 74 (355)
+|-|.|+|..+++.||+++|. ..+++..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 356779999999999999998 5555554
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=67.85 E-value=4.8 Score=33.19 Aligned_cols=43 Identities=19% Similarity=0.418 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhh
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 64 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~de 64 (355)
.+...++|++.+++++. +|..++.++ |||-.- ....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n-~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEMN-AEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHHH-HHHHHHhcCCC
Confidence 45567888888999998 999999999 776421 22334445434
No 36
>PLN02847 triacylglycerol lipase
Probab=67.20 E-value=6.8 Score=40.69 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=39.4
Q ss_pred cCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhh--hhCCcceEeee
Q 018458 9 CDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 74 (355)
Q Consensus 9 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~d--eyp~~~~~~~~ 74 (355)
+|++.-.+.+.+.+...|++.++++...+=+.+=||||||+. +.+.-.|++ .|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 455555556777777888888888876655566699997764 344444454 45554444443
No 37
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=65.92 E-value=13 Score=31.18 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=40.2
Q ss_pred cCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecC
Q 018458 9 CDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 77 (355)
Q Consensus 9 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P 77 (355)
+|++.....+...+...+++...++..-+-+.+=||+||+. +..+...++...+...+..++.-|
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEEEeCC
Confidence 47777777888888888888777666665556668887554 444445555543333344444433
No 38
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=65.43 E-value=20 Score=29.03 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCC
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 50 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtG 50 (355)
.+++.++|++.+++.+.-+|+.++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 34566667777777777788999999988874
No 39
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=64.04 E-value=7.9 Score=31.08 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCC
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 50 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtG 50 (355)
.+++.+++++.+++.+.-+|+.++.++.|||-
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 45667778888888888899999999999874
No 40
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=56.65 E-value=13 Score=33.39 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=37.8
Q ss_pred ccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceE
Q 018458 8 CCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKL 71 (355)
Q Consensus 8 a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~ 71 (355)
-+|++.....+.+.+...+++..+++...+=+..-|||||+ +++.+.-.|+..++...+.
T Consensus 100 h~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i~ 159 (229)
T cd00519 100 HSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDVT 159 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCceE
Confidence 35666666677777788888888776665555555888855 4455555566554333333
No 41
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=56.14 E-value=18 Score=29.20 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCCC
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGS 51 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGS 51 (355)
.+++.+++++.+++.+.=+|+.++.++-|||-.
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~ 73 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPY 73 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHH
Confidence 456777788888877766899999999999853
No 42
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=48.99 E-value=53 Score=31.81 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhh
Q 018458 16 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 95 (355)
Q Consensus 16 ~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl 95 (355)
.+.+.++.+.|++.. +..+||.|+|+.+ |= -.++.+++.+-+..+|-.+++=+..|....+.........++.+
T Consensus 65 ~~~w~~la~~I~~~~---~~~dG~VVtHGTD--Tm-eeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~ 138 (335)
T PRK09461 65 PEDWQHIADDIKANY---DDYDGFVILHGTD--TM-AYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNALYV 138 (335)
T ss_pred HHHHHHHHHHHHHHh---ccCCeEEEeeccc--hH-HHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHHHH
Confidence 455566666666654 5678999999654 42 55677777755555676677778888765443334444444444
Q ss_pred hhhhhccceeeEechhHHH
Q 018458 96 HSLLEHTDVAVLLDNEAIY 114 (355)
Q Consensus 96 ~~l~e~~d~~i~~dN~~l~ 114 (355)
..-.+.+-..++|++ .+.
T Consensus 139 A~~~~~~GV~V~f~~-~i~ 156 (335)
T PRK09461 139 AANYPINEVTLFFNN-KLF 156 (335)
T ss_pred HcCCCCCeEEEEECC-Eee
Confidence 332223334445544 444
No 43
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=47.27 E-value=13 Score=32.15 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=36.0
Q ss_pred cCchhHHHHHHHHHHHHHH--hhcccceeeecccCCCchhhHHHHHHhHHHHHHHHHHHcc
Q 018458 283 SNSTSVAEVFSRIDHKFDL--MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 341 (355)
Q Consensus 283 ~N~t~i~~~l~~i~~~~~~--m~~~kAylH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~ 341 (355)
-.=.-|+..+.++.+-+.. =|..-.||+||+.|+.+|+ ..+.+|++..+-++.
T Consensus 92 ehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe------~l~~~I~d~~~~ag~ 146 (167)
T COG1528 92 EHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEE------KLFKTILDKLELAGN 146 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Confidence 3444566666666666555 3577889999999998764 445577777766654
No 44
>PRK13660 hypothetical protein; Provisional
Probab=46.33 E-value=79 Score=27.87 Aligned_cols=79 Identities=8% Similarity=0.060 Sum_probs=45.7
Q ss_pred hHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhhhhhccceeeEechhHHHHHhhhccCCCCCCcchhhH
Q 018458 54 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR 133 (355)
Q Consensus 54 gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~~l~~~~~~~l~~~~~~~~~~N~ 133 (355)
++.++-.|+.+||.. -..+++|+...++.- .-..-.-+..+...||-++.+.... .-....|..-|+
T Consensus 58 AaEvvl~LK~~yp~l--kL~~~~PF~~q~~~W--~e~~q~~y~~i~~~aD~v~~vs~~~---------y~~p~q~~~rn~ 124 (182)
T PRK13660 58 AAEVVLELKEEYPDL--KLAVITPFEEHGENW--NEANQEKLANILKQADFVKSISKRP---------YESPAQFRQYNQ 124 (182)
T ss_pred HHHHHHHHHhhCCCe--EEEEEeCccchhhcC--CHHHHHHHHHHHHhCCEEEEecCCC---------CCChHHHHHHHH
Confidence 566777899999964 445677887533211 1122334556677888888884321 001123567777
Q ss_pred HHHHHhhcCCce
Q 018458 134 LVSQVISSLTAS 145 (355)
Q Consensus 134 ~ia~~i~~~t~~ 145 (355)
.+-.+-+.+..-
T Consensus 125 fmv~~sd~~i~~ 136 (182)
T PRK13660 125 FMLEHTDGALLV 136 (182)
T ss_pred HHHHccCeEEEE
Confidence 777665555443
No 45
>PF03283 PAE: Pectinacetylesterase
Probab=46.14 E-value=42 Score=32.92 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHHHhh-hhhccCccceeEEEecCCCCCCCchHHH-HHHhhhhhCC
Q 018458 11 DVSVGKEIVDLCLDRIRKL-ADNCTGLQGFLVFNAVGGGTGSGLGSLL-LERLSVDYGK 67 (355)
Q Consensus 11 ~~~~g~~~~~~~~d~iR~~-~E~cD~lqgf~~~~sl~GGtGSG~gs~l-le~l~deyp~ 67 (355)
.|--|..+.+.+++.|... +.+.+ -+.+..+.+||.| +.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a~---~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNAK---QVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcccc---eEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 3445888888888877766 54444 3477777776654 444 8889999995
No 46
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=44.55 E-value=81 Score=30.13 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC-ccccchhhhHHh
Q 018458 16 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVLS 94 (355)
Q Consensus 16 ~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~-~~~~~~yN~~ls 94 (355)
.+.+.++.+.|++.+++ .+||.|+|+.. |= -..+..+..+-+..+|-.+++=+..|....+ +...-.++++.
T Consensus 56 ~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~- 128 (313)
T PF00710_consen 56 PEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVR- 128 (313)
T ss_dssp HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHH-
Confidence 34455556666666643 88999999544 21 3455666665555566667777888876533 33333334433
Q ss_pred hhhhhhccceeeEechh
Q 018458 95 THSLLEHTDVAVLLDNE 111 (355)
Q Consensus 95 l~~l~e~~d~~i~~dN~ 111 (355)
+..-.+..-..++|++.
T Consensus 129 ~A~~~~~~GV~v~f~~~ 145 (313)
T PF00710_consen 129 VAASPAGPGVLVVFNGR 145 (313)
T ss_dssp HHHSGGTSSEEEEETTE
T ss_pred HHhcccCCceEEEeCCC
Confidence 33332344445555544
No 47
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=43.31 E-value=30 Score=31.43 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=22.5
Q ss_pred EEEecCCCCCCCchHHHHHHhhhhhCCc
Q 018458 41 VFNAVGGGTGSGLGSLLLERLSVDYGKK 68 (355)
Q Consensus 41 ~~~sl~GGtGSG~gs~lle~l~deyp~~ 68 (355)
++-+++||+|||= +.++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5678999999997 67788899998855
No 48
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=43.10 E-value=21 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhccC-ccceeEEEecCCCC
Q 018458 19 VDLCLDRIRKLADNCTG-LQGFLVFNAVGGGT 49 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~-lqgf~~~~sl~GGt 49 (355)
.+...++|++.+|+++. =+|+.++.++ ||+
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 34556778888888865 7899999999 664
No 49
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=40.79 E-value=83 Score=30.27 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhh
Q 018458 16 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 95 (355)
Q Consensus 16 ~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl 95 (355)
.+.+..+.+.|++..++ .+||.|+|+.. |= -..+..+..+-+. +|-.+++=+..|....+....+....++..
T Consensus 62 ~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~~ 134 (323)
T cd00411 62 DEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVYV 134 (323)
T ss_pred HHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHHH
Confidence 34455556666665553 78999999544 32 4456666655455 776677777888765443444445555544
Q ss_pred hhhhh--ccceeeEechhH
Q 018458 96 HSLLE--HTDVAVLLDNEA 112 (355)
Q Consensus 96 ~~l~e--~~d~~i~~dN~~ 112 (355)
..-.+ .....+.|++..
T Consensus 135 A~~~~~~~~gV~V~f~~~i 153 (323)
T cd00411 135 AANYDSRGRGVLVVFNDRI 153 (323)
T ss_pred HcCcccCCCeEEEEECCEE
Confidence 43322 345566675553
No 50
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=38.43 E-value=35 Score=26.56 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=20.8
Q ss_pred ccceeEEEecCCCCCCCchHHHHHHhhh
Q 018458 36 LQGFLVFNAVGGGTGSGLGSLLLERLSV 63 (355)
Q Consensus 36 lqgf~~~~sl~GGtGSG~gs~lle~l~d 63 (355)
..+|.|..+...|+|+.+-+.|++.|.-
T Consensus 19 ~~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 19 KSGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp HTTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3578999999989887777777777654
No 51
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=37.89 E-value=37 Score=27.46 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=32.6
Q ss_pred cCcccchH-HHHHHHHHHHHhhhhhccCccceeEE-EecCCCCCCCchHHHHHHhhhhhCC
Q 018458 9 CDDVSVGK-EIVDLCLDRIRKLADNCTGLQGFLVF-NAVGGGTGSGLGSLLLERLSVDYGK 67 (355)
Q Consensus 9 ~G~~~~g~-~~~~~~~d~iR~~~E~cD~lqgf~~~-~sl~GGtGSG~gs~lle~l~deyp~ 67 (355)
+|++..-. ...+.+.+.|++..++.-. ..+.++ ||+||+ ++..+.-.+.+..+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPD-YSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTT-SEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccC-ccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 34444444 5667788888887776654 334444 788754 455555566665543
No 52
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=37.66 E-value=1.2e+02 Score=22.35 Aligned_cols=51 Identities=20% Similarity=0.401 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhc--cCccceeEEEecC----CCCCCCchHHHHHHhhhhhCCcceEeee
Q 018458 21 LCLDRIRKLADNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFT 74 (355)
Q Consensus 21 ~~~d~iR~~~E~c--D~lqgf~~~~sl~----GGtGSG~gs~lle~l~deyp~~~~~~~~ 74 (355)
+....++..+++| ...+.+.|+++.| +|. +...+.+.|++.+....+..+.
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 4445555556555 3557889999888 443 6777777776655555555543
No 53
>PLN02408 phospholipase A1
Probab=35.04 E-value=80 Score=31.02 Aligned_cols=62 Identities=11% Similarity=0.305 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhhccCcc-ceeEE-EecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC
Q 018458 17 EIVDLCLDRIRKLADNCTGLQ-GFLVF-NAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS 82 (355)
Q Consensus 17 ~~~~~~~d~iR~~~E~cD~lq-gf~~~-~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~ 82 (355)
.+.+++++.|++.+++...-+ .+.++ ||+|| .++....-.|+..++..+.+.+..+-.+..+
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGG----ALAtLaA~dl~~~~~~~~~V~v~tFGsPRVG 242 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGA----ALATLTAYDIKTTFKRAPMVTVISFGGPRVG 242 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHH----HHHHHHHHHHHHhcCCCCceEEEEcCCCCcc
Confidence 467888888888888764321 23444 67663 3555566667777765544444444334334
No 54
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=32.01 E-value=1.2e+02 Score=29.48 Aligned_cols=93 Identities=13% Similarity=-0.003 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhh
Q 018458 16 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 95 (355)
Q Consensus 16 ~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl 95 (355)
.+.+..+.+.|++..+ ..+||.|+|+.+ |= -..+..+..+-+. +|-.+++=+-.|....+....+....++..
T Consensus 61 p~~w~~la~~I~~~~~---~~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~~ 133 (336)
T TIGR00519 61 PEYWVEIAEAVKKEYD---DYDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVRA 133 (336)
T ss_pred HHHHHHHHHHHHHHHh---cCCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHHH
Confidence 4455666666666665 378999999554 32 4566667665454 776677778888765443344444444444
Q ss_pred hhhhhc-----cceeeEechhHHHH
Q 018458 96 HSLLEH-----TDVAVLLDNEAIYD 115 (355)
Q Consensus 96 ~~l~e~-----~d~~i~~dN~~l~~ 115 (355)
..-.+. -..++++=|+.+..
T Consensus 134 A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 134 ATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred HcCccccccccCceeEEEccCeEee
Confidence 433231 22444444555544
No 55
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=31.80 E-value=55 Score=23.64 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHhhhhhCCcceE
Q 018458 49 TGSGLGSLLLERLSVDYGKKSKL 71 (355)
Q Consensus 49 tGSG~gs~lle~l~deyp~~~~~ 71 (355)
-|.|+|+.|+..+.+.++.+.+.
T Consensus 39 rg~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 39 RGKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp TTSSHHHHHHHHHHHHHTCSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCcEE
Confidence 35699999999999999876653
No 56
>PHA03159 hypothetical protein; Provisional
Probab=31.73 E-value=3.4 Score=33.95 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=18.7
Q ss_pred CchHHHHHHhhhhhCCcceEeeeecCC
Q 018458 52 GLGSLLLERLSVDYGKKSKLGFTVYPS 78 (355)
Q Consensus 52 G~gs~lle~l~deyp~~~~~~~~v~P~ 78 (355)
|+|+.+++.|++||. .++.+++|.
T Consensus 81 sFsa~vlQkIded~r---~~AtsvLss 104 (160)
T PHA03159 81 SFSAAALQTIDEDYK---CVATSMLSS 104 (160)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHhHH
Confidence 789999999999984 355566654
No 57
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=31.59 E-value=65 Score=31.36 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=29.1
Q ss_pred CCCCCchHHHHHHhhhhhCCcce-EeeeecCCCCCCccccchhhhHHhhhh
Q 018458 48 GTGSGLGSLLLERLSVDYGKKSK-LGFTVYPSPQVSTSVVEPYNSVLSTHS 97 (355)
Q Consensus 48 GtGSG~gs~lle~l~deyp~~~~-~~~~v~P~~~~~~~~~~~yN~~lsl~~ 97 (355)
|.|+++..++-+.|++.|.-..+ -++--+|-...+=....|+=+++.+..
T Consensus 268 ~~~~~~~~~l~~~i~~rf~~~~iPdg~~~~P~~lGGL~l~nPfi~l~~~r~ 318 (346)
T cd01709 268 GGGGSVTEYLRQMIESRFGVSDIPDGFFYFPEELGGLGLKNPFISLLLVRD 318 (346)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCCchheeChhhcCCcccCCcchhHHHHHh
Confidence 33445667777777777653332 344456655445556667766666554
No 58
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=30.99 E-value=1.6e+02 Score=29.43 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhh
Q 018458 16 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 95 (355)
Q Consensus 16 ~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl 95 (355)
.+.+..+.+.|++.++ +..+||.|+|+.. |= -.++..+..+-+..|+-.+++=+-.|....+.......-+++.+
T Consensus 122 p~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~ 196 (404)
T TIGR02153 122 PEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVRA 196 (404)
T ss_pred HHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHHH
Confidence 4555666677776665 3468999999544 32 45666666655555666677777888654332233333333333
Q ss_pred hhhhhccceeeEechh
Q 018458 96 HSLLEHTDVAVLLDNE 111 (355)
Q Consensus 96 ~~l~e~~d~~i~~dN~ 111 (355)
..- ..+-..++|+++
T Consensus 197 A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 197 ATS-PIAEVTVVMHGE 211 (404)
T ss_pred HhC-CCCcEEEEECCc
Confidence 322 345566777664
No 59
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=30.40 E-value=1.6e+02 Score=28.26 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=43.4
Q ss_pred cCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhhhhh--ccceeeEechh
Q 018458 34 TGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLE--HTDVAVLLDNE 111 (355)
Q Consensus 34 D~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e--~~d~~i~~dN~ 111 (355)
+..+||.|+|+.. |= -..+..+..+-+..+|-.+++=+-.|....+.........++....-.+ ..-..++| |+
T Consensus 76 ~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~~A~~~~a~~~GV~V~f-~~ 151 (323)
T smart00870 76 DGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRVAASPEARGRGVLVVF-ND 151 (323)
T ss_pred CCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHHHHcCcccCCCEEEEEE-CC
Confidence 5689999999544 32 4466666655555567667777788876544333343444443333222 33344555 44
Q ss_pred HHHH
Q 018458 112 AIYD 115 (355)
Q Consensus 112 ~l~~ 115 (355)
.+..
T Consensus 152 ~i~~ 155 (323)
T smart00870 152 EIHR 155 (323)
T ss_pred Eeee
Confidence 4443
No 60
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=29.66 E-value=55 Score=31.81 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=26.9
Q ss_pred hhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEe
Q 018458 30 ADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 72 (355)
Q Consensus 30 ~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~ 72 (355)
.+.+.-+.|+....++|||+| +++..|--.||+...+.
T Consensus 169 l~~~~Gf~~v~~avDvGgGiG-----~v~k~ll~~fp~ik~in 206 (342)
T KOG3178|consen 169 LEVYTGFKGVNVAVDVGGGIG-----RVLKNLLSKYPHIKGIN 206 (342)
T ss_pred hhhhcccccCceEEEcCCcHh-----HHHHHHHHhCCCCceee
Confidence 566666888999999998887 35555444899854433
No 61
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.02 E-value=31 Score=32.28 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHH
Q 018458 21 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER 60 (355)
Q Consensus 21 ~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~ 60 (355)
++++++|+.+++=.-+ +++|.|+|+.++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788899988866544 4457888999887665
No 62
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=1.3e+02 Score=32.37 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred cCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC-C---ccccchhhhHHhhhhhhhccceeeEech-hHHHH
Q 018458 45 VGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-S---TSVVEPYNSVLSTHSLLEHTDVAVLLDN-EAIYD 115 (355)
Q Consensus 45 l~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~-~---~~~~~~yN~~lsl~~l~e~~d~~i~~dN-~~l~~ 115 (355)
+.|+-|+| -+.|++.|-++|.|..+..+-++.-... + +.+..-.|.++ ..-..++..+|++|| |.|..
T Consensus 436 l~G~~GsG-KT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf--se~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 436 LNGPKGSG-KTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF--SEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred EeCCCCCC-HhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH--HHHHhhCCcEEEEcchhhhhc
Confidence 56788877 5678889999998654443333322111 1 22222333333 344678999999998 55443
No 63
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=27.44 E-value=1.5e+02 Score=20.98 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=22.6
Q ss_pred eeEEEecCCCCCCCchHH--HHHHhhhhhCCcceEee
Q 018458 39 FLVFNAVGGGTGSGLGSL--LLERLSVDYGKKSKLGF 73 (355)
Q Consensus 39 f~~~~sl~GGtGSG~gs~--lle~l~deyp~~~~~~~ 73 (355)
+.++.+.+|..|-.+... |.+.||..|++++++..
T Consensus 17 ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 17 ILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp EEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 466789998877655554 47889999988876543
No 64
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=27.11 E-value=2.2e+02 Score=28.49 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhhh
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 98 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l 98 (355)
.+...+.|+..+. ...+++.|..+.+.|+|+++.+.+++.|--+ +....-.|..........+.| +-.+..+
T Consensus 158 ~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~~~~~ll~~lG~~-----v~~in~~~dg~~~~~~~~~~~-l~~l~~~ 229 (448)
T PRK14318 158 TDRYLRHLLGALP--TRLDGLKVVVDCAHGAASGVAPEAYRAAGAD-----VIAINADPDGLNINDGCGSTH-LEQLQAA 229 (448)
T ss_pred HHHHHHHHHHHhc--cccCCCEEEEECCCchHHHHHHHHHHHcCCE-----EEEeccCCCCCCCCCCCCCCC-HHHHHHH
Confidence 3444455555543 2457999999999999988888888887322 222222222211000111111 1223333
Q ss_pred h--hccceeeEechhH
Q 018458 99 L--EHTDVAVLLDNEA 112 (355)
Q Consensus 99 ~--e~~d~~i~~dN~~ 112 (355)
+ ..+|+.+.+|.|+
T Consensus 230 v~~~~adlGia~DgD~ 245 (448)
T PRK14318 230 VVAHGADLGLAHDGDA 245 (448)
T ss_pred HHhcCCCEEEEecCCC
Confidence 3 2479999999776
No 65
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=27.10 E-value=2.6e+02 Score=27.35 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=25.5
Q ss_pred eEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCC
Q 018458 40 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 78 (355)
Q Consensus 40 ~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~ 78 (355)
.++.++||| |+.+-+.-.++...|+..+ +.|-|.
T Consensus 178 ~v~vpvGGG---GLisGia~~~k~~~p~~~v--IGVEp~ 211 (347)
T COG1171 178 AVFVPVGGG---GLISGIATALKALSPEIKV--IGVEPE 211 (347)
T ss_pred EEEEecCcc---HHHHHHHHHHHHhCCCCeE--EEEeeC
Confidence 567788876 7888899999999988544 445554
No 66
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=26.66 E-value=2.4e+02 Score=28.48 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhh
Q 018458 18 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 97 (355)
Q Consensus 18 ~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~ 97 (355)
+.+...+.|.+.+..--..+++.|..+.+.|+|+++.+.+++.|--+ +....-.|..........+-| +-.+..
T Consensus 168 ~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~~~~~~ll~~LG~~-----v~~l~~~~dg~~~~~~~~~~~-l~~l~~ 241 (465)
T PRK14317 168 LLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAVACAPEVFKALGAE-----VICLHDQPDGDRINVNCGSTH-LEPLQA 241 (465)
T ss_pred hHHHHHHHHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHcCCe-----EEEEecccCCCCCCCCCchHh-HHHHHH
Confidence 34444455544442101357999999999999888888888776422 222222233221100000111 112233
Q ss_pred hh--hccceeeEechhH
Q 018458 98 LL--EHTDVAVLLDNEA 112 (355)
Q Consensus 98 l~--e~~d~~i~~dN~~ 112 (355)
++ ..+|..+.+|-|+
T Consensus 242 ~v~~~~adlGia~DgDg 258 (465)
T PRK14317 242 AVLEHGADMGFAFDGDA 258 (465)
T ss_pred HHHhcCCCEEEEECCCC
Confidence 22 2479999999776
No 67
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=26.45 E-value=2.7e+02 Score=28.10 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC---CccccchhhhHHh
Q 018458 18 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV---STSVVEPYNSVLS 94 (355)
Q Consensus 18 ~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~---~~~~~~~yN~~ls 94 (355)
..+...+.|++.+..-..+.++.|..+.+.|+|+.+...+++.|- ......-..|.... ...+....+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 445555556655553346778999999998887777777766643 33444444444321 1223333333222
Q ss_pred hhhhhhccceeeEechhH
Q 018458 95 THSLLEHTDVAVLLDNEA 112 (355)
Q Consensus 95 l~~l~e~~d~~i~~dN~~ 112 (355)
-.-....+|..+-+|-|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 222223689999999877
No 68
>PLN03013 cysteine synthase
Probab=25.96 E-value=28 Score=34.97 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=18.5
Q ss_pred EEEecCCCCCCCchHHHHHHhhhhhCCcceEe
Q 018458 41 VFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 72 (355)
Q Consensus 41 ~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~ 72 (355)
++.++| || |.-+-+...|++..|+..++.
T Consensus 284 vV~~vG--tG-GtisGiar~lKe~~P~vkVig 312 (429)
T PLN03013 284 FVAGIG--TG-GTITGVGRFIKEKNPKTQVIG 312 (429)
T ss_pred EEEeCC--cc-HHHHHHHHHHHhhCCCCEEEE
Confidence 344444 33 667778888888888765443
No 69
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=25.68 E-value=32 Score=15.91 Aligned_cols=7 Identities=57% Similarity=1.545 Sum_probs=5.3
Q ss_pred cccCCCc
Q 018458 162 NLVPYPR 168 (355)
Q Consensus 162 ~L~p~P~ 168 (355)
.|+||||
T Consensus 4 GlI~fpR 10 (11)
T PF08259_consen 4 GLIPFPR 10 (11)
T ss_pred cccccCC
Confidence 5788886
No 70
>PTZ00489 glutamate 5-kinase; Provisional
Probab=25.31 E-value=2e+02 Score=26.83 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=28.4
Q ss_pred hhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhhhhhccceeeEechh
Q 018458 61 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE 111 (355)
Q Consensus 61 l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~dN~ 111 (355)
..+.|.+..+.+..+++.........+..|+.-++..|.+. .++|+-|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44455444555555665443223344556888888888877 56677544
No 71
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.30 E-value=68 Score=30.11 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcc
Q 018458 20 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 69 (355)
Q Consensus 20 ~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~ 69 (355)
+.+...+|.+.+.||++ ||-|...++|.+....+-..
T Consensus 5 ~~~r~~l~~Qak~C~s~-------------GSpf~a~lle~Va~~l~~s~ 41 (350)
T COG4427 5 EHVRNALRSQAKVCDSL-------------GSPFTARLLELVAARLDLSG 41 (350)
T ss_pred HHHHHHHHHHhhhhccc-------------CCHHHHHHHHHHHhhccccc
Confidence 45678899999999975 89999999999998877433
No 72
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=25.25 E-value=62 Score=31.64 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=44.9
Q ss_pred ccccccCCCC--Cceeee---ecCCCccCCCCCcccceeeeeeccCchhHH-HHHHHHHHHHHH--hhcccceeeeccc-
Q 018458 244 TIQFVDWCPT--GFKCGI---NYQPPTVVPGGDLAKVQRAVCMISNSTSVA-EVFSRIDHKFDL--MYAKRAFVHWYVG- 314 (355)
Q Consensus 244 ~~~f~~w~p~--~~~~~~---~~~~p~~~~~~~~~~~~~s~~~l~N~t~i~-~~l~~i~~~~~~--m~~~kAylH~Y~~- 314 (355)
+..|++|.|+ +++++. ...|+..+++.+-++.+.+-....+...|. ..+++|...++. =++.=++.|||-+
T Consensus 64 r~~fVDlEPtidevrtG~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGg 143 (407)
T KOG1376|consen 64 RAVFVDLEPTIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGG 143 (407)
T ss_pred eeEEEeccCccchhcccchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCC
Confidence 4569999998 677763 334555556555444445555555554444 333443333332 2334488999987
Q ss_pred CCCchhh
Q 018458 315 EGMEEGE 321 (355)
Q Consensus 315 ~Gmee~e 321 (355)
.|++..-
T Consensus 144 tGsg~~s 150 (407)
T KOG1376|consen 144 TGSGLGS 150 (407)
T ss_pred CcCCccc
Confidence 6765543
No 73
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=24.49 E-value=1.1e+02 Score=18.66 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=15.7
Q ss_pred ceeEEEecCCCCCCCchHHHHHHhhhhh
Q 018458 38 GFLVFNAVGGGTGSGLGSLLLERLSVDY 65 (355)
Q Consensus 38 gf~~~~sl~GGtGSG~gs~lle~l~dey 65 (355)
.+||.-| || |-++.+...||++.
T Consensus 4 ~LqI~IS----Tn-G~sP~la~~iR~~i 26 (30)
T PF14824_consen 4 PLQIAIS----TN-GKSPRLARLIRKEI 26 (30)
T ss_dssp TEEEEEE----ES-SS-HHHHHHHHHHH
T ss_pred CeEEEEE----CC-CCChHHHHHHHHHH
Confidence 3567776 43 67889988888863
No 74
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=24.46 E-value=97 Score=29.86 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCC
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 50 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtG 50 (355)
.+++.+++++.+++.+.-+|+.++.++-|||-
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45667777778888776789999999999985
No 75
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.34 E-value=1.8e+02 Score=25.38 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=43.5
Q ss_pred CCcccCcccchHHHHHHHHHHHHhhhhhc--cCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCC
Q 018458 5 SKLCCDDVSVGKEIVDLCLDRIRKLADNC--TGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 80 (355)
Q Consensus 5 ~n~a~G~~~~g~~~~~~~~d~iR~~~E~c--D~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~ 80 (355)
.+|--|-+..-..-.-.+.+.||+.+|.- +-+.=+.+++.|| +- =-++-++-.|+++||+. -...+.|+..
T Consensus 10 k~felgiF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqLG--~E-~WA~Evv~eLk~eyp~i--k~avitpFe~ 82 (180)
T COG4474 10 KSFELGIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQLG--FE-LWAAEVVIELKEEYPHI--KLAVITPFEE 82 (180)
T ss_pred cceeeccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEecccc--HH-HHHHHHHHHHHhhCCCe--eEEEEechhh
Confidence 44555666655555667778888877753 4455556555433 21 22566778899999964 3455677754
No 76
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.31 E-value=45 Score=31.84 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=38.4
Q ss_pred EEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC----C--ccccc-hhhhHHhhhhhhhccceeeEechhHHH
Q 018458 42 FNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----S--TSVVE-PYNSVLSTHSLLEHTDVAVLLDNEAIY 114 (355)
Q Consensus 42 ~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~----~--~~~~~-~yN~~lsl~~l~e~~d~~i~~dN~~l~ 114 (355)
+.++| || |--+-+...||+.+|+. -.+.|-|..+. + ...+| .=+......-..+..|-++-++++.-.
T Consensus 174 VagvG--TG-GTitGvar~Lk~~~p~i--~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~ 248 (300)
T COG0031 174 VAGVG--TG-GTITGVARYLKERNPNV--RIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAI 248 (300)
T ss_pred EEeCC--cc-hhHHHHHHHHHhhCCCc--EEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHH
Confidence 44443 54 55666788889999984 45566665310 0 00111 111111122234457888888876666
Q ss_pred HHhhh
Q 018458 115 DICRR 119 (355)
Q Consensus 115 ~~~~~ 119 (355)
..+.+
T Consensus 249 ~~~r~ 253 (300)
T COG0031 249 ATARR 253 (300)
T ss_pred HHHHH
Confidence 55543
No 77
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=23.37 E-value=57 Score=19.13 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=9.1
Q ss_pred CCCCCCCchHHHH
Q 018458 46 GGGTGSGLGSLLL 58 (355)
Q Consensus 46 ~GGtGSG~gs~ll 58 (355)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 4678888876554
No 78
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=23.10 E-value=2.4e+02 Score=28.13 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhh
Q 018458 18 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 62 (355)
Q Consensus 18 ~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~ 62 (355)
+.+...+.|.+.+. - ..+++.|..+...|+|+++.+.+++.|-
T Consensus 145 ~~~~Y~~~l~~~i~-~-~~~~lkVvvd~~~G~~~~~~~~ll~~lG 187 (443)
T cd03089 145 ILPDYIDRLLSDIK-L-GKRPLKVVVDAGNGAAGPIAPQLLEALG 187 (443)
T ss_pred CHHHHHHHHHHhcc-c-ccCCCeEEEECCCCchHHHHHHHHHHCC
Confidence 34444455544442 1 1279999999999999888888888764
No 79
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=22.81 E-value=3e+02 Score=27.54 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC-ccccchhhhHHhhhh
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVLSTHS 97 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~-~~~~~~yN~~lsl~~ 97 (355)
.+...+.|++.+...-..++|.|..+.+.|+|+++.+.+++.|--+ +..+...|..... +... +=| +-.|..
T Consensus 153 ~~~Y~~~l~~~i~~~~~~~~lkVvvD~~~G~~~~~~~~ll~~lg~~-----v~~in~~~d~~~~~~~~~-~~~-l~~l~~ 225 (443)
T TIGR01455 153 VGRYIEFLKSTLPRGLTLSGLKVVLDCANGAAYKVAPHVFRELGAE-----VIAIGVEPDGLNINDGCG-STH-LDALQK 225 (443)
T ss_pred HHHHHHHHHHHhhcccccCCCEEEEECCCchHHHHHHHHHHHcCCE-----EEEEccCCCCCCCCCCCC-CCC-HHHHHH
Confidence 3444444554443212346899999999998877777777776322 2222222322111 1110 111 122333
Q ss_pred hh--hccceeeEechhH
Q 018458 98 LL--EHTDVAVLLDNEA 112 (355)
Q Consensus 98 l~--e~~d~~i~~dN~~ 112 (355)
++ ..+|..+.+|.|+
T Consensus 226 ~v~~~~adlGia~DgD~ 242 (443)
T TIGR01455 226 AVREHGADLGIAFDGDA 242 (443)
T ss_pred HHhhcCCCEEEEEcCCC
Confidence 32 3589999999776
No 80
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=22.68 E-value=2.6e+02 Score=28.08 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhh
Q 018458 16 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 95 (355)
Q Consensus 16 ~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl 95 (355)
.+.+..+.+.|++.++. ..+||.|+|+.. |= -.++..|..+- ..|+-.+++=+-.|....+.......-+++.+
T Consensus 135 p~~W~~La~~I~~~~~~--~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~ 208 (419)
T PRK04183 135 PEYWVEIAEAVYEEIKN--GADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAVLA 208 (419)
T ss_pred HHHHHHHHHHHHHHhhc--cCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHHHH
Confidence 45566777777777763 489999999654 42 45666666544 55676677777888654333333333333333
Q ss_pred hhhhhccceeeEechh
Q 018458 96 HSLLEHTDVAVLLDNE 111 (355)
Q Consensus 96 ~~l~e~~d~~i~~dN~ 111 (355)
.. ...+-..++|+++
T Consensus 209 A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 209 AT-SDIAEVVVVMHGT 223 (419)
T ss_pred Hh-CCCCcEEEEECCc
Confidence 33 3345566677654
No 81
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.57 E-value=1.6e+02 Score=30.36 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhh-hccCccceeEEEecCCCCCCCchHHHHHHhh
Q 018458 17 EIVDLCLDRIRKLAD-NCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 62 (355)
Q Consensus 17 ~~~~~~~d~iR~~~E-~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~ 62 (355)
++.+...+.|.+.+. +.....++.|..+...|+|+.+...+++.|-
T Consensus 188 ~~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~~~~~~ll~~lG 234 (522)
T cd05801 188 DFVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPYWQPIAEKYG 234 (522)
T ss_pred CcHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccHHHHHHHHHHcC
Confidence 344444555555443 1123468999999999999888888888763
No 82
>PRK07831 short chain dehydrogenase; Provisional
Probab=22.15 E-value=53 Score=29.76 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=16.8
Q ss_pred cCCCCCCCchHHHHHHhhhh
Q 018458 45 VGGGTGSGLGSLLLERLSVD 64 (355)
Q Consensus 45 l~GGtGSG~gs~lle~l~de 64 (355)
+.||+|+|+|..+++.+.++
T Consensus 22 ItG~sg~gIG~~ia~~l~~~ 41 (262)
T PRK07831 22 VTAAAGTGIGSATARRALEE 41 (262)
T ss_pred EECCCcccHHHHHHHHHHHc
Confidence 34778889999999999876
No 83
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=22.14 E-value=2.4e+02 Score=24.74 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCcccCcccchHHHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcc
Q 018458 4 YSKLCCDDVSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 69 (355)
Q Consensus 4 ~~n~a~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~ 69 (355)
|+-++..|.. .......+...+-..++......+ ..+-++|.|+| .+ +..+.+.+|+..
T Consensus 2 ~~~~~~~y~~-~~~~q~~~~~~l~~~~~~~~~~~~-~~vLDlG~G~G-~~----~~~l~~~~~~~~ 60 (240)
T TIGR02072 2 FNKAAKTYDR-HAKIQREMAKRLLALLKEKGIFIP-ASVLDIGCGTG-YL----TRALLKRFPQAE 60 (240)
T ss_pred cchhhhchhH-HHHHHHHHHHHHHHHhhhhccCCC-CeEEEECCCcc-HH----HHHHHHhCCCCc
Confidence 3444555543 234444444444334443222223 45678887776 23 334445556543
No 84
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=21.92 E-value=3.6e+02 Score=27.00 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCC---ccccchhhhHH
Q 018458 17 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS---TSVVEPYNSVL 93 (355)
Q Consensus 17 ~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~---~~~~~~yN~~l 93 (355)
++.+...+.|.+.++ -..++++.|..+...|+|+++...+++.|- ..+....-.|..... -.+..+ -.+-
T Consensus 144 ~~~~~Y~~~l~~~i~-~~~i~~lkVvvd~~~Ga~~~~~~~ll~~lg-----~~vv~~~~~~d~~Fp~~~p~P~~~-~~l~ 216 (445)
T PRK09542 144 DVLADYAAFLRSLVD-LSGIRPLKVAVDAGNGMGGHTVPAVLGGLP-----ITLLPLYFELDGTFPNHEANPLDP-ANLV 216 (445)
T ss_pred ChHHHHHHHHHHhcc-cccCCCCEEEEECCCCchhHHHHHHHHhCC-----CEEEEEecCcCCCCCCCCcCCCCH-HHHH
Confidence 344444555554442 123579999999999998888888877552 222333222322211 111111 1122
Q ss_pred hhhhhh--hccceeeEechhH
Q 018458 94 STHSLL--EHTDVAVLLDNEA 112 (355)
Q Consensus 94 sl~~l~--e~~d~~i~~dN~~ 112 (355)
.+..++ ..+|+.|.+|-|+
T Consensus 217 ~l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 217 DLQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHHcCCCEEEEECCCC
Confidence 333332 2489999999776
No 85
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.86 E-value=2.1e+02 Score=26.81 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=30.4
Q ss_pred CcccCcccchHHHHHHHHH-HHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeee
Q 018458 6 KLCCDDVSVGKEIVDLCLD-RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 75 (355)
Q Consensus 6 n~a~G~~~~g~~~~~~~~d-~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v 75 (355)
.|..|||..+.+-.++... .+...+|+++--.| .=+-++|.|+| | ++..+.+.| ++.+.++.+
T Consensus 30 ~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~----~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 30 KYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-G----LAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp --S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-H----HHHHHHHHH---EEEEEES
T ss_pred CCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-H----HHHHHHHHc-CcEEEEEEC
Confidence 5778888887765555544 47777888865455 45567887777 3 344456667 444444443
No 86
>PLN02371 phosphoglucosamine mutase family protein
Probab=21.77 E-value=2e+02 Score=30.10 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=41.1
Q ss_pred ccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCC---CccccchhhhHHhhhhh-hhccceeeEechh
Q 018458 36 LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV---STSVVEPYNSVLSTHSL-LEHTDVAVLLDNE 111 (355)
Q Consensus 36 lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~---~~~~~~~yN~~lsl~~l-~e~~d~~i~~dN~ 111 (355)
++++.|..+.+.|+|+++...+++.|--+ .+...-..|.... .-.+..+.|--.....+ ...+|..|.+|-|
T Consensus 261 ~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgD 336 (583)
T PLN02371 261 LEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTD 336 (583)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 57999999999999988888888876322 1112212222211 11122222322222222 2347999999977
Q ss_pred H
Q 018458 112 A 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 337 a 337 (583)
T PLN02371 337 V 337 (583)
T ss_pred c
Confidence 6
No 87
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=21.59 E-value=2.4e+02 Score=27.50 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=28.1
Q ss_pred ccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCC
Q 018458 36 LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 78 (355)
Q Consensus 36 lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~ 78 (355)
-+|..++-+-.|||| -|.++..|.+.+.........+.|.
T Consensus 20 ~~~~~~fv~G~~GtG---Ks~l~~~i~~~~~~~~~~~~~~a~t 59 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTG---KSFLIKAIIDYLRSRGKKVLVTAPT 59 (364)
T ss_pred cCCcEEEEEcCCCCC---hhHHHHHHHHHhccccceEEEecch
Confidence 466677777777887 5789999998887654555555553
No 88
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.57 E-value=32 Score=28.72 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=17.1
Q ss_pred cccceeeecccCCCchhhHHHHHHhHHHHH
Q 018458 304 AKRAFVHWYVGEGMEEGEFSEAREDLAALE 333 (355)
Q Consensus 304 ~~kAylH~Y~~~Gmee~eF~ea~~~l~~l~ 333 (355)
+|.+|| .+-||+++|+.+|+....+-.
T Consensus 25 ~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 25 KKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 455555 234999999999999877655
No 89
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.49 E-value=2.3e+02 Score=26.52 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=47.4
Q ss_pred HHHHhhhhhccCccceeEEEecCCCCCCCch-----HHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhhh
Q 018458 24 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLG-----SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 98 (355)
Q Consensus 24 d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~g-----s~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l 98 (355)
++|++.++.+ +||.-..|..|=||.-.. ..+++.+|+.-.......|.|-- .-...++
T Consensus 161 ~rl~~i~~~a---~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~--------------~e~~~~v 223 (265)
T COG0159 161 ERLKKIAEAA---SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISS--------------PEQAAQV 223 (265)
T ss_pred HHHHHHHHhC---CCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCC--------------HHHHHHH
Confidence 5566666643 599999999999997444 45566676654332334455521 1234566
Q ss_pred hhccceeeEechhHHHHHhhh
Q 018458 99 LEHTDVAVLLDNEAIYDICRR 119 (355)
Q Consensus 99 ~e~~d~~i~~dN~~l~~~~~~ 119 (355)
.+++|++|+= .++-++..+
T Consensus 224 ~~~ADGVIVG--SAiV~~i~~ 242 (265)
T COG0159 224 AEAADGVIVG--SAIVKIIEE 242 (265)
T ss_pred HHhCCeEEEc--HHHHHHHHh
Confidence 7789998875 455555544
No 90
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.38 E-value=1.4e+02 Score=24.41 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhh
Q 018458 17 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 65 (355)
Q Consensus 17 ~~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~dey 65 (355)
+-.+.+.+.|++.+++||- ++.+ ||||-|---.+.+.+++-.
T Consensus 42 Dd~~~I~~~l~~~~~~~dl-----iitt--GG~g~g~~D~t~~~l~~~~ 83 (135)
T smart00852 42 DDKEAIKEALREALERADL-----VITT--GGTGPGPDDVTPEAVAEAL 83 (135)
T ss_pred CCHHHHHHHHHHHHhCCCE-----EEEc--CCCCCCCCcCcHHHHHHHh
Confidence 3445667777777776662 2222 7787666666666666543
No 91
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=21.31 E-value=2.7e+02 Score=25.00 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=23.3
Q ss_pred hhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcc
Q 018458 31 DNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 69 (355)
Q Consensus 31 E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~ 69 (355)
.+.-.+.++.-+.++|||+|. ++..|...||+..
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 126 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGH-----FAIALARAYPNLR 126 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSH-----HHHHHHHHSTTSE
T ss_pred hccccccCccEEEeccCcchH-----HHHHHHHHCCCCc
Confidence 344457788889999999983 4455567788763
No 92
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=21.09 E-value=3.1e+02 Score=25.61 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=29.7
Q ss_pred HHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCc---ceEeeeecCCC
Q 018458 23 LDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK---SKLGFTVYPSP 79 (355)
Q Consensus 23 ~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~---~~~~~~v~P~~ 79 (355)
.+.|-+.+..++.-.+ ++-++.|.||||=++. +..+.++..+. ....+-.-|..
T Consensus 5 a~~la~~I~~~~~~~~--~~IgL~G~WGsGKSs~-l~~l~~~L~~~~~~~~~~i~fn~w~ 61 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDP--FVIGLYGEWGSGKSSF-LNMLKEELKEDNKEKYIFIYFNAWE 61 (325)
T ss_pred HHHHHHHHhccCCCCC--eEEEEECCCCCCHHHH-HHHHHHHHhcccccceeeEEEcccc
Confidence 3445555555543333 3446889999995554 55666655443 33444444433
No 93
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=21.08 E-value=62 Score=27.94 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=17.7
Q ss_pred cCCCCCCCchHHHHHHhhhhhC
Q 018458 45 VGGGTGSGLGSLLLERLSVDYG 66 (355)
Q Consensus 45 l~GGtGSG~gs~lle~l~deyp 66 (355)
+.||+| |+|..+++.|.+.+.
T Consensus 5 itGG~g-glg~~la~~La~~~~ 25 (181)
T PF08659_consen 5 ITGGLG-GLGQSLARWLAERGA 25 (181)
T ss_dssp EETTTS-HHHHHHHHHHHHTT-
T ss_pred EECCcc-HHHHHHHHHHHHcCC
Confidence 467887 999999999999874
No 94
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=21.08 E-value=64 Score=33.54 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=17.6
Q ss_pred cCCCCCCCchHHHHHHhhhhhCCcc
Q 018458 45 VGGGTGSGLGSLLLERLSVDYGKKS 69 (355)
Q Consensus 45 l~GGtGSG~gs~lle~l~deyp~~~ 69 (355)
+.||||| +|+.++..+...-|++.
T Consensus 255 VTGagGS-iGsel~~qil~~~p~~i 278 (588)
T COG1086 255 VTGGGGS-IGSELCRQILKFNPKEI 278 (588)
T ss_pred EeCCCCc-HHHHHHHHHHhcCCCEE
Confidence 3467774 89999888887777754
No 95
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.99 E-value=1.5e+02 Score=24.67 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhh
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 63 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~d 63 (355)
.+.+.+.|++..++|| .++.+ ||+|-|=--.+.+.+++
T Consensus 53 ~~~i~~~l~~~~~~~D-----liItt--GG~g~g~~D~t~~ai~~ 90 (144)
T TIGR00177 53 PEEIREILRKAVDEAD-----VVLTT--GGTGVGPRDVTPEALEE 90 (144)
T ss_pred HHHHHHHHHHHHhCCC-----EEEEC--CCCCCCCCccHHHHHHH
Confidence 3566677777777777 33333 77776655666666654
No 96
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=20.78 E-value=73 Score=19.43 Aligned_cols=13 Identities=54% Similarity=0.992 Sum_probs=7.7
Q ss_pred CCCCCCCchHHHHH
Q 018458 46 GGGTGSGLGSLLLE 59 (355)
Q Consensus 46 ~GGtGSG~gs~lle 59 (355)
..|+|||+ +.+++
T Consensus 11 tSGSGSG~-p~Lvq 23 (30)
T smart00467 11 TSGSGSGL-PLLVQ 23 (30)
T ss_pred cCCCCCCc-hhHHH
Confidence 45778876 44433
No 97
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=20.33 E-value=3.5e+02 Score=27.13 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhhhhhCCcceEeeeecCCCCCCccccchhhhHHhhhh
Q 018458 18 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 97 (355)
Q Consensus 18 ~~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~deyp~~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~ 97 (355)
+.+...+.|++.+..--...+|.+..+.+.|+|+++.+.+++.|--+ +......|..........+-| .-.+..
T Consensus 156 ~~~~Y~~~l~~~id~~i~~~~lkVvvD~~~G~~~~~~~~ll~~lG~~-----v~~i~~~~dg~~~~~~~~~~~-l~~l~~ 229 (448)
T PRK14315 156 AHGRYIEFAKRTLPRDLRLDGLRVVVDCANGAAYKVAPEALWELGAE-----VITIGVEPNGFNINEECGSTH-PEALAK 229 (448)
T ss_pred hHHHHHHHHHHhcccccccCCCEEEEECCCchHHHHHHHHHHHcCCe-----EEEeccCCCCCCCCCCCCCCC-HHHHHH
Confidence 33444444544443111236999999999999888888888776322 222222232211100111111 112333
Q ss_pred hh--hccceeeEechhH
Q 018458 98 LL--EHTDVAVLLDNEA 112 (355)
Q Consensus 98 l~--e~~d~~i~~dN~~ 112 (355)
++ ..+|..+.+|.|+
T Consensus 230 ~v~~~~adlGia~DgDg 246 (448)
T PRK14315 230 KVREVRADIGIALDGDA 246 (448)
T ss_pred HHHHcCCCEEEEEcCCC
Confidence 32 4589999999876
No 98
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=20.15 E-value=3.3e+02 Score=27.14 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhhccCccceeEEEecCCCCCCCchHHHHHHhh
Q 018458 19 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 62 (355)
Q Consensus 19 ~~~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~l~ 62 (355)
.+...+.|++.+... ..++|.|..+...|+|+++...+++.|-
T Consensus 146 ~~~Y~~~l~~~~~~~-~~~~lkIvid~~~G~~~~~~~~~l~~lg 188 (439)
T cd03087 146 IDEYIEAILDKVDID-GGKGLKVVVDCGNGAGSLTTPYLLRELG 188 (439)
T ss_pred HHHHHHHHHHhcCcc-cCCCCEEEEECCCCchHHHHHHHHHHcC
Confidence 333344444444311 1579999999999988877777777764
Done!