BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018459
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R5Z|A Chain A, Crystal Structure Of Subunit C Of V-Atpase
pdb|1R5Z|B Chain B, Crystal Structure Of Subunit C Of V-Atpase
pdb|1R5Z|C Chain C, Crystal Structure Of Subunit C Of V-Atpase
pdb|1V9M|A Chain A, Crystal Structure Of The C Subunit Of V-Type Atpase From
Thermus Thermophilus
pdb|3J0J|M Chain M, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 323
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 81/234 (34%), Gaps = 38/234 (16%)
Query: 15 YLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKC 74
YL A VR R LL + + D +++ LS T YG L + P V +
Sbjct: 7 YLNARVRVRRGTLLKESFFQEALDLSFADFLRL-LSETVYGGELAGQGLP-DVDRAVLRT 64
Query: 75 TLKLVDEYKHMLC-QATEP------------LSTFLEYITYGHMIDNVVLIVTGTLHERD 121
KLV + ++ +A E L L G + V+L+ GTL E
Sbjct: 65 QAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLL-PGTLREEV 123
Query: 122 VQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIM 181
++ E P GM +A PLA + E D +E +
Sbjct: 124 WRQAYEAQDPAGMAQVLAVPG---------------HPLARAL-RAVLRETQDLARVEAL 167
Query: 182 RNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRD 235
L K + ED K + G + D LA E D + G+ L D
Sbjct: 168 ---LAKRFFEDVAKAAK---GLDQPALRDYLALEVDAENLRTAFKLQGSGLAPD 215
>pdb|2P7J|A Chain A, Crystal Structure Of The Domain Of Putative Sensory
Box/ggdef Family Protein From Vibrio Parahaemolyticus
pdb|2P7J|B Chain B, Crystal Structure Of The Domain Of Putative Sensory
Box/ggdef Family Protein From Vibrio Parahaemolyticus
Length = 287
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 29 TAADYNNLC-QCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCT-----LKLVDEY 82
T +YNN+ Q ET+ D+ H S + Y YL+ EPS + T + + KL +
Sbjct: 26 TGREYNNIQDQIETISDLLGH-SQSLYD-YLR-EPSKANLTILENXWSSVARNQKLYKQI 82
Query: 83 KHMLCQATEPL-------------------STFLEYITYGHMIDNVVLIVTGTLHERDVQ 123
+ + TE + + EY Y +DN + G ERD
Sbjct: 83 RFLDTSGTEKVRIKYDFKTSIAGPSLILRDKSAREYFKYAQSLDNEQISAWGIELERDKG 142
Query: 124 ELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR 182
EL +PL I ++R+ Y ++ VD Y S + + D +IE+++
Sbjct: 143 EL---VYPLSPSLRILXPISVNDVRQGYLVLNVDI---EYLSSLLNYSPVRDFHIELVK 195
>pdb|3ABO|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABO|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABQ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABQ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABR|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABR|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABS|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ABS|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ANY|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3ANY|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3AO0|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
pdb|3AO0|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
Length = 453
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 120 RDVQELLEKCHPLGMFDSIATLAVA---------QNMRELYRLVLVDTPLAPYFSECITS 170
+DV+E+L K + L D +A +A A Q + E+ + + P+ Y +C+T
Sbjct: 15 KDVKEVLAKANELRSGDVLAGVAAASSQERVAAKQVLSEMTVADIRNNPVIAYEDDCVTR 74
Query: 171 EDLDDMN 177
DD+N
Sbjct: 75 LIQDDVN 81
>pdb|3LID|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
pdb|3LID|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
pdb|3LIE|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
pdb|3LIE|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Histidine Kinase Vphk1s-Z8
Length = 295
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 29 TAADYNNLC-QCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCT-----LKLVDEY 82
T +YNN+ Q ET+ D+ H S + Y YL+ EPS + T + + KL +
Sbjct: 26 TGREYNNIQDQIETISDLLGH-SQSLYD-YLR-EPSKANLTILENMWSSVARNQKLYKQI 82
Query: 83 KHMLCQATEPL-------------------STFLEYITYGHMIDNVVLIVTGTLHERDVQ 123
+ + TE + + EY Y +DN + G ERD
Sbjct: 83 RFLDTSGTEKVRIKYDFKTSIAGPSLILRDKSAREYFKYAQSLDNEQISAWGIELERDKG 142
Query: 124 ELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR 182
EL +PL I ++R+ Y ++ VD Y S + + D +IE+++
Sbjct: 143 EL---VYPLSPSLRILMPISVNDVRQGYLVLNVDI---EYLSSLLNYSPVRDFHIELVK 195
>pdb|3MJG|A Chain A, The Structure Of A Platelet Derived Growth Factor
Receptor Complex
pdb|3MJG|B Chain B, The Structure Of A Platelet Derived Growth Factor
Receptor Complex
Length = 172
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 7 MTFNIHGGYLEAIVRGYRA-GLLTAADYNNLCQCETLDDI 45
MT + GG LE++ RG R+ G LT A+ + +C+T ++
Sbjct: 44 MTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEV 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,529,321
Number of Sequences: 62578
Number of extensions: 416686
Number of successful extensions: 823
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 6
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)