Query 018459
Match_columns 355
No_of_seqs 132 out of 315
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2957 Vacuolar H+-ATPase V0 100.0 3E-102 6E-107 727.5 24.0 340 1-342 1-346 (350)
2 COG1527 NtpC Archaeal/vacuolar 100.0 5E-60 1.1E-64 462.3 28.0 323 11-341 7-341 (346)
3 PF01992 vATP-synt_AC39: ATP s 100.0 1.5E-54 3.3E-59 421.9 13.6 314 15-333 1-327 (337)
4 TIGR02923 AhaC ATP synthase A1 100.0 7E-52 1.5E-56 404.8 30.3 322 11-339 3-338 (343)
5 PRK01198 V-type ATP synthase s 100.0 4.7E-49 1E-53 385.8 30.8 324 9-339 7-346 (352)
6 PRK01198 V-type ATP synthase s 99.9 1.4E-21 3.1E-26 191.5 21.1 212 26-241 132-350 (352)
7 TIGR02923 AhaC ATP synthase A1 99.7 3.3E-16 7.2E-21 153.2 21.7 213 25-241 125-342 (343)
8 PF01992 vATP-synt_AC39: ATP s 99.5 1E-13 2.2E-18 135.1 9.4 211 28-241 120-336 (337)
9 COG1527 NtpC Archaeal/vacuolar 99.3 1.8E-10 3.9E-15 113.6 20.0 210 30-243 129-345 (346)
10 PF10962 DUF2764: Protein of u 96.9 0.041 8.8E-07 53.0 15.4 209 65-319 23-240 (271)
11 KOG2957 Vacuolar H+-ATPase V0 62.0 1.7E+02 0.0037 29.0 14.5 170 132-319 25-198 (350)
12 PF12345 DUF3641: Protein of u 35.5 84 0.0018 27.2 5.0 94 66-159 4-113 (134)
13 PF06878 Pkip-1: Pkip-1 protei 30.7 4E+02 0.0086 23.9 11.4 144 179-330 7-159 (163)
14 PF12249 AftA_C: Arabinofurano 29.4 28 0.00061 31.5 1.2 35 128-163 78-116 (178)
15 PRK12794 flaF flagellar biosyn 28.2 2.4E+02 0.0052 23.9 6.7 97 53-152 7-106 (122)
No 1
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=100.00 E-value=2.7e-102 Score=727.47 Aligned_cols=340 Identities=60% Similarity=0.966 Sum_probs=334.0
Q ss_pred CCCCCcccccCCCCchhhhhHhHhcCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCCCCCHHHHHHHHHHhHHH
Q 018459 1 MYGFEAMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVD 80 (355)
Q Consensus 1 ~~~~~~~~fn~~~gY~~arVRg~k~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~~~~~~~Ie~aL~~~La~ 80 (355)
|..|++++||++|||++|.|||.|+++|+++||.+|+||||+||++.+|+.||||.+++++++++|++.|+++|+++|+.
T Consensus 1 m~~~~~~~fn~~~GYle~lvrG~k~glL~~~dY~nL~QCE~LEDlki~Ls~Tdyg~fl~n~~s~lt~s~I~~~l~ekL~~ 80 (350)
T KOG2957|consen 1 MLMMEALSFNIDYGYLEALVRGKKAGLLKQADYNNLVQCENLEDLKIHLSSTDYGNFLANEPSPLTVSVIDEKLREKLVD 80 (350)
T ss_pred CCcccceEEeccccchHHHHhhhhhhhhhHHHHHHHHhhccHHHHHHhhcccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccchHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCcchhHHHhcCCHHHHHHHHhcCCCC
Q 018459 81 EYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPL 160 (355)
Q Consensus 81 ef~~l~~~a~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~l~~L~~a~sveel~~~vL~~Tp~ 160 (355)
+|++++.+|.+|+++||+|+++.||||||.++++|++|+++..+++++|||+|||++|.++.+|+|+.|+|++||++||+
T Consensus 81 ef~h~R~~a~epl~tfldyity~ymIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpl 160 (350)
T KOG2957|consen 81 EFDHIRDQADEPLSTFLDYITYGYMIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPL 160 (350)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhcc
Q 018459 161 APYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKL 240 (355)
Q Consensus 161 ~~~~~~~l~~~~l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l 240 (355)
+|||++|+++++|+++|+|++||.|||+|+|+||+||+++||.|+++|+++|+||||||+|.|++||+++++++++|.+|
T Consensus 161 a~~F~dc~~~~dld~mniEIiRn~lYKaylE~fY~fc~~~g~~tae~M~~iL~fEaDRRai~ItiNs~gteL~~~~R~kL 240 (350)
T KOG2957|consen 161 APYFEDCLSEEDLDEMNIEIIRNTLYKAYLEDFYNFCKKLGGATAEVMCEILAFEADRRAIIITINSFGTELSKEDRAKL 240 (350)
T ss_pred hHHHHhhcCHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccceeEEEehhhcccccChhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCHhhHHhhccCCCHHHHHHHhccCccchHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccCcHHHHHHHHHh
Q 018459 241 YSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQVSISVKCSCLFR 320 (355)
Q Consensus 241 ~p~~G~L~~~~l~~L~~a~d~e~~~~~l~~~~~Y~~l~~~~~~~~~~~lE~~~~~~ev~~~~~sf~~qfs~~~~yaylkl 320 (355)
||.+|+|+|.++..||.|+|.|+++++++.++.|+.+|+...+++++++||+|++.||++++.||.||||+|+||||+|+
T Consensus 241 ~P~~g~lyp~~~~~La~aed~e~vk~v~~~~~~Y~~~fd~~~~~g~ktLed~f~e~Ev~~~~~aF~qqfh~gvfyay~Kl 320 (350)
T KOG2957|consen 241 YPNCGKLYPRGLELLARAEDYEQVKNVLSTYYEYKALFDKDGGPGSKTLEDVFYEHEVKLNVLAFLQQFHFGVFYAYMKL 320 (350)
T ss_pred CCCcCccChhHHHHHHhhhhHHHHHHHHHhhhhhHhHhhcCCCCccccHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999987756779999999999999999999999999999999999
Q ss_pred h-----chhhhc-cccCCccchhhhhcC
Q 018459 321 G-----SILFIS-CIPHFPLTRDVIFHL 342 (355)
Q Consensus 321 K-----NI~~Ia-cI~~~~~~~~~~~~~ 342 (355)
| ||+||| ||.||| ||.|+|.
T Consensus 321 KEQEiRNI~WIAECIaQnq--r~ri~~~ 346 (350)
T KOG2957|consen 321 KEQEIRNIVWIAECIAQNQ--RDRIDNY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHhhH--HHHHhcc
Confidence 9 999999 999999 8999885
No 2
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=100.00 E-value=5e-60 Score=462.28 Aligned_cols=323 Identities=25% Similarity=0.328 Sum_probs=287.8
Q ss_pred CCCCchhhhhHhHhcCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCCCCCHHHHHHHHHHhHHHHHHHHHHccc
Q 018459 11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQAT 90 (355)
Q Consensus 11 ~~~gY~~arVRg~k~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~~~~~~~Ie~aL~~~La~ef~~l~~~a~ 90 (355)
.+|+|++||||||+++||++++|++|+||++++|++++|++|+|++.++++++ .+.+.+|+||+++|+++|+.+++++|
T Consensus 7 ~~y~y~~~RIr~~e~~lL~~e~~~~Ll~~~~lee~~~~L~~T~Y~~~~d~l~~-~~~~~le~aL~~~L~~~~~~i~~~sp 85 (346)
T COG1527 7 APYAYPNARIRVMEARLLTDEQYSELLEAESLEEFARVLEETDYKEDLDSLTS-LGPDLLEKALNRKLVDTYRLILRISP 85 (346)
T ss_pred ccccccchhHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHhcCCchhHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 57999999999999999999999999999999999999999999999999987 78999999999999999999999999
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCcchhHHHhcCCHHHHHHHHhcCCCChhhhhhhccc
Q 018459 91 EPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITS 170 (355)
Q Consensus 91 ~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~ 170 (355)
|.++.++++|+++|||||||+++|||.+| +++++...|||+|+|+.+..++.++|++++++. +.+|+|.+++...+.
T Consensus 86 ~~~k~~i~~~l~k~di~NIk~li~ak~~g-~~~~~~~~liP~G~~~~~~~l~~a~t~eev~~~-~~~~~y~~~~~~~~~- 162 (346)
T COG1527 86 GSIKKLIDAYLYKWDIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVET-LEGTTYLAPLEEALR- 162 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CccchHHhcCcCchHHHHHHHHhhcchHHHHHH-HhcCchhHHHHHHHH-
Confidence 99999999999999999999999999999 999999999999999999999999999999999 688888888874432
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccccCCCccCHh
Q 018459 171 EDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPY 250 (355)
Q Consensus 171 ~~l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p~~G~L~~~ 250 (355)
...+..|++++|+.|||+|||+|++++++..+.. +|.++++++||++||.+++|+++..++.+.+..++|+||.|+++
T Consensus 163 ~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~~--~~~~~~~~eID~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~ 240 (346)
T COG1527 163 DYEDTGDIEPLENALDKAYYEDLLRSVNSEKGDE--LLREFLRLEIDRRNIKTALRGKASELSEELMESLIPDGGSLDAS 240 (346)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHH
Confidence 2245578999999999999999999998655543 99999999999999999999999778888888999999999999
Q ss_pred hHHhhccCCCHHHHHHHhccCccchHHHh-hhc---cCCCCchhhHHHHHHHHHHH--HHhhccCcHHHHHHHHHhh---
Q 018459 251 GHEELAVCEDIDQVRGVMEKYPPYQSIFS-KLS---YGESQMLDKAFYEEEVKRLC--LAFEQQVSISVKCSCLFRG--- 321 (355)
Q Consensus 251 ~l~~L~~a~d~e~~~~~l~~~~~Y~~l~~-~~~---~~~~~~lE~~~~~~ev~~~~--~sf~~qfs~~~~yaylklK--- 321 (355)
++..|++++|+.++++++++++ |++++. ... +++...++..+...++..+. .|...|+|++|+++|++.|
T Consensus 241 ~~~~l~~~ed~~~~~~~l~~t~-yg~~l~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~E 319 (346)
T COG1527 241 ALRDLAEAEDILDVLEALEGTS-YGDALSEYREEYEEGGSIAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIE 319 (346)
T ss_pred HHHHHHhcccHHHHHHHcccCc-hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999 666553 322 34445666666666665444 4558889999999999999
Q ss_pred --chhhhc-cccCCccchhhhhc
Q 018459 322 --SILFIS-CIPHFPLTRDVIFH 341 (355)
Q Consensus 322 --NI~~Ia-cI~~~~~~~~~~~~ 341 (355)
||+||| ||.|.. -||.|.+
T Consensus 320 V~NLr~Ia~~k~~~~-~~e~i~~ 341 (346)
T COG1527 320 VKNLRWIAEGKANGL-PREEIKE 341 (346)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHH
Confidence 999999 999986 4666655
No 3
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=100.00 E-value=1.5e-54 Score=421.90 Aligned_cols=314 Identities=26% Similarity=0.365 Sum_probs=247.5
Q ss_pred chhhhhHhHhcCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCCCCCHHHHHHHHHHhHHHHHHHHHHcccchHH
Q 018459 15 YLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLS 94 (355)
Q Consensus 15 Y~~arVRg~k~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~~~~~~~Ie~aL~~~La~ef~~l~~~a~~~l~ 94 (355)
|++||||||+++||++++|.+|++|++++|+...|++|.|++++++.+...|+..+|.+|+++++++|+.++++++++.+
T Consensus 1 Y~~arvra~~~~lL~~~~~~~L~~~~~~~~~~~~l~~t~Y~~~l~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~ 80 (337)
T PF01992_consen 1 YVNARVRAMEAKLLTKEDYEELLEAESVEEAVSLLEDTGYGDYLEEVSSEIHRRDIEQALRRELFKEFQKLLRFAPGEAK 80 (337)
T ss_dssp HHHHHHHHHGGGS--HHHHHHHTTS-HHHHHHHHHTS-GGGGG--SSSHH----HHHHHHHHHHHHHTTTGGGG--HHHH
T ss_pred ChhHhHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHhcccHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 89999999999999999999999999999999999999999999998755689999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCc--chhHHHhcCCHHHHHHHHhcCCCChhhhhhhccccc
Q 018459 95 TFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSED 172 (355)
Q Consensus 95 ~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~--~l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~ 172 (355)
.|++.++.+|||+|||.+|||+..|++.+++...++|+| ++ .+..|..++|++|+++. |.||||+++++++.+ +
T Consensus 81 ~~~~~~~~r~ei~nik~ilr~~~~g~~~~~~~~~l~~~g-~~~~~l~~l~~~~~~~e~~~~-L~~t~y~~~l~~~~~--~ 156 (337)
T PF01992_consen 81 EFLDAYLMRYEIHNIKTILRAKLSGRDLEEILELLIPLG-FSFEDLKELLSAKDVEELIEA-LKGTPYYEVLRQALE--D 156 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--GGGS---S-SS--HHHHHHHHSSSHHHHHHHH-H-TTT-THHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhccccC-CChhhHHHHhccCCHHHHHHH-hcCcchHHHHHHHHH--h
Confidence 999999999999999999999999999999999999999 55 48999999999999977 899999999998876 4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccccCCCccCHhhH
Q 018459 173 LDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGH 252 (355)
Q Consensus 173 l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p~~G~L~~~~l 252 (355)
++..++..++..|++.||+++++.+.+.++.+.+++.++++++||+.||+|++|+++++++++++..++|+||++.++.+
T Consensus 157 ~~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l 236 (337)
T PF01992_consen 157 YEQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGMEIDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRL 236 (337)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHHHHHTTTS---GGGT-----SS-SS--H-H
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHH
Confidence 77778889999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCHHHHHHHhccCccchHHHhhhccC----CCCchhhHHHHHHHH-HHHHHhhccCcHHHHHHHHHhh-----c
Q 018459 253 EELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG----ESQMLDKAFYEEEVK-RLCLAFEQQVSISVKCSCLFRG-----S 322 (355)
Q Consensus 253 ~~L~~a~d~e~~~~~l~~~~~Y~~l~~~~~~~----~~~~lE~~~~~~ev~-~~~~sf~~qfs~~~~yaylklK-----N 322 (355)
++|++++|.+++.+.+++++ |+..+...... ....+|+.+....++ ..+.++.+|||++|++||+.+| |
T Consensus 237 ~~l~~~~~~~~~~~~l~~t~-y~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~n 315 (337)
T PF01992_consen 237 KALAEAEDVEEFLEALSGTP-YGKLLSDAEEEYEETSLSELERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRN 315 (337)
T ss_dssp HHHHHHTT-GGGGGS-TTST-TGGGTT--S-------HHHHHHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcCc-hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 66655433311 125888888999898 6678889999999999999999 9
Q ss_pred hhhhc-cccCCc
Q 018459 323 ILFIS-CIPHFP 333 (355)
Q Consensus 323 I~~Ia-cI~~~~ 333 (355)
|+||+ ||+...
T Consensus 316 L~~I~~g~~~gl 327 (337)
T PF01992_consen 316 LRTIIEGKRYGL 327 (337)
T ss_dssp HHHHHHHHHHT-
T ss_pred HHHHHHHHHcCC
Confidence 99999 999875
No 4
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=100.00 E-value=7e-52 Score=404.78 Aligned_cols=322 Identities=19% Similarity=0.235 Sum_probs=291.9
Q ss_pred CCCCchhhhhHhHhcCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCC-CCCHHHHHHHHHHhHHHHHHHHHHcc
Q 018459 11 IHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPS-PLHTTTIVEKCTLKLVDEYKHMLCQA 89 (355)
Q Consensus 11 ~~~gY~~arVRg~k~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~-~~~~~~Ie~aL~~~La~ef~~l~~~a 89 (355)
.+|+|++||||||+++||++++|.+|++|+|++|++.+|++|+|++.+++... ..++..||.+|+++++++|+++.+++
T Consensus 3 ~~Y~~~~arvr~~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~ 82 (343)
T TIGR02923 3 SPYAYPNARVRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLIEHALDANLAKTYEKLFRIS 82 (343)
T ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHhcCCChHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999999999998754 35799999999999999999999999
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhh
Q 018459 90 TEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSEC 167 (355)
Q Consensus 90 ~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~ 167 (355)
+++.++|++.++++|||+||++|+||+..|++.+++.+.++|.|.|+. +.+|+.++|++|+++. |.+|||+++++++
T Consensus 83 ~~~~~~~~~~~~~~~di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~-L~~t~y~~~l~~~ 161 (343)
T TIGR02923 83 PGASRDLIRLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEA-LEGTPYYGPLQEA 161 (343)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHH-cCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 8999999999999997 8999999999988
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccccCCC-c
Q 018459 168 ITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFG-L 246 (355)
Q Consensus 168 l~~~~l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p~~G-~ 246 (355)
+.. ..++..+|+.||++||+++++.++..++.+..++..+++.++|+.||+|++|+++++++++++..++++|| .
T Consensus 162 ~~~----~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~ 237 (343)
T TIGR02923 162 LAG----NGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYE 237 (343)
T ss_pred Hhc----CCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcccc
Confidence 721 24678899999999999999998766667788999999999999999999999999999999998877788 6
Q ss_pred cCHhhHHhhccCCCHHHHHHHhccCccchHHHhh-hc--cCCCCchhhHHHHHHHHHHH-HHhhccCcHHHHHHHHHhh-
Q 018459 247 LYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSK-LS--YGESQMLDKAFYEEEVKRLC-LAFEQQVSISVKCSCLFRG- 321 (355)
Q Consensus 247 L~~~~l~~L~~a~d~e~~~~~l~~~~~Y~~l~~~-~~--~~~~~~lE~~~~~~ev~~~~-~sf~~qfs~~~~yaylklK- 321 (355)
+.++++++|++++|.+++.+.|.+++ |++.+.. .+ .++...+|..+....++.++ .+...|||++|+++|+.+|
T Consensus 238 l~~~~l~~l~~~~~~~~~~~~l~~t~-y~~~l~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke 316 (343)
T TIGR02923 238 LDEEKLAPLAHIESIDEVVSALDGTK-YGEDISEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKE 316 (343)
T ss_pred cCHHHHHHHHcCCCHHHHHHHHhcCc-chHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 79999999999999999999999988 8887763 22 12337899999999999886 5889999999999999999
Q ss_pred ----chhhhc-cccCCccchhhh
Q 018459 322 ----SILFIS-CIPHFPLTRDVI 339 (355)
Q Consensus 322 ----NI~~Ia-cI~~~~~~~~~~ 339 (355)
||+||+ |++-.- ..|.|
T Consensus 317 ~Ei~nlr~I~~gk~~~l-~~e~I 338 (343)
T TIGR02923 317 REVRNLRAIARGKEEGL-PPEEI 338 (343)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHH
Confidence 999999 998643 34444
No 5
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=100.00 E-value=4.7e-49 Score=385.77 Aligned_cols=324 Identities=19% Similarity=0.234 Sum_probs=291.7
Q ss_pred ccCCCCchhhhhHhHhcCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCCC-CCHHHHHHHHHHhHHHHHHHHHH
Q 018459 9 FNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSP-LHTTTIVEKCTLKLVDEYKHMLC 87 (355)
Q Consensus 9 fn~~~gY~~arVRg~k~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~~-~~~~~Ie~aL~~~La~ef~~l~~ 87 (355)
...+|+|++||||||+++||++++|.+|++|+|++|++.+|++|+|++.+.+++.. .|++.+|.+|+.+++++|.++.+
T Consensus 7 ~~~~y~~~~~rira~~~~lL~~~~~~~L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~~E~~L~~~l~~~~~~l~~ 86 (352)
T PRK01198 7 DSAPYAYVNARVRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSGPDLIEKALNRNLAKTYELLLE 86 (352)
T ss_pred CCCCCcchHHHHHHHHHccCCHHHHHHHHhCCCHHHHHHHHhcCCcHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999987764 37999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCc--chhHHHhcCCHHHHHHHHhcCCCChhhhh
Q 018459 88 QATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFS 165 (355)
Q Consensus 88 ~a~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~--~l~~L~~a~sveel~~~vL~~Tp~~~~~~ 165 (355)
+++++.+.|++.+..+|||+||+.++||+..|++.+++.+.++|.|.++ .+.+|+.++|++|+++. |.+|+|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~-L~~T~Y~~~l~ 165 (352)
T PRK01198 87 ISPGRLKELVDVYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKI-LEGTEYYEVLE 165 (352)
T ss_pred HCcchHHHHHHHHHHHHhHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHH-hcCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999998 48999999999999998 89999999999
Q ss_pred hhcccccc-ccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccccCC
Q 018459 166 ECITSEDL-DDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNF 244 (355)
Q Consensus 166 ~~l~~~~l-~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p~~ 244 (355)
++.+. + +..++..+|..||++||+++++.+ +.++.+.+.+.++++.++|+.||++++|+++.+++++.+.++++++
T Consensus 166 ~~~~~--~~~~~~~~~~E~~Ld~~~~~~l~~~~-~~~~~~~~~l~~~~~~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~ 242 (352)
T PRK01198 166 EALED--YEETGDLQPIENALDKYYYENLLEIA-SPKDIDEKLLLEYVRTEIDITNIKTLLRLKAQGLSADFIEKVLIPG 242 (352)
T ss_pred HHHHH--HhccCCHHHHHHHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHccCC
Confidence 87753 3 225788999999999999999998 4556678899999999999999999999999999999999888889
Q ss_pred CccCHhhHHhhccCCCHHHHHHHhccCccchHHHhhh-c---cC-CCCchhhHHHHHHHHHHH-HHhhccCcHHHHHHHH
Q 018459 245 GLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-S---YG-ESQMLDKAFYEEEVKRLC-LAFEQQVSISVKCSCL 318 (355)
Q Consensus 245 G~L~~~~l~~L~~a~d~e~~~~~l~~~~~Y~~l~~~~-~---~~-~~~~lE~~~~~~ev~~~~-~sf~~qfs~~~~yayl 318 (355)
|+++++.+++|+ ++|++++.+.|++|+ |+..+... . .+ +...+|..++....+..+ .+...|++++++++|+
T Consensus 243 g~i~~~~l~~l~-~~~~~~~~~~L~~t~-y~~~l~~~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl 320 (352)
T PRK01198 243 GSLDEEKLKELL-AEDIEELVSALEGTK-YGDVLSEALEEYEETGSLSVFEKALDNYLLEYMKKLSKRYPFSVEPILGYI 320 (352)
T ss_pred CCcCHHHHHHHh-cCCHHHHHHHHhcCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHH
Confidence 999999999999 999999999999998 77776532 2 11 236899989888888777 6778999999999999
Q ss_pred Hhh-----chhhhc-cccCCccchhhh
Q 018459 319 FRG-----SILFIS-CIPHFPLTRDVI 339 (355)
Q Consensus 319 klK-----NI~~Ia-cI~~~~~~~~~~ 339 (355)
.+| ||+||+ |++++. ..|.|
T Consensus 321 ~~~e~Ei~NL~~I~~gk~~~~-~~e~I 346 (352)
T PRK01198 321 LAKEREVKNLRIIARGKENGL-SPEEI 346 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHH
Confidence 999 999999 966654 55554
No 6
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=99.89 E-value=1.4e-21 Score=191.47 Aligned_cols=212 Identities=17% Similarity=0.214 Sum_probs=184.4
Q ss_pred CCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCC----CCCCHHHHHHHHHHhHHHHHHHHHHcccchHHHHHHHHH
Q 018459 26 GLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEP----SPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYIT 101 (355)
Q Consensus 26 ~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~----~~~~~~~Ie~aL~~~La~ef~~l~~~a~~~l~~fl~~~~ 101 (355)
|-++.+++.+|+++++++|+...|++|.|++.+.+.. ...++..+|.+|++.+.+....+.+..+.....+.+++.
T Consensus 132 g~l~~~~l~~l~~~~~~~e~~~~L~~T~Y~~~l~~~~~~~~~~~~~~~~E~~Ld~~~~~~l~~~~~~~~~~~~~l~~~~~ 211 (352)
T PRK01198 132 GELDLEKLKELLEAKSVEEIVKILEGTEYYEVLEEALEDYEETGDLQPIENALDKYYYENLLEIASPKDIDEKLLLEYVR 211 (352)
T ss_pred CcCCHHHHHHHHhCCCHHHHHHHhcCCchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 4578899999999999999999999999999987631 234789999999999988777777666788889999999
Q ss_pred hhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhhcccccccc-ccH
Q 018459 102 YGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDD-MNI 178 (355)
Q Consensus 102 ~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e-~~i 178 (355)
.++|++||++++||+..|.+++++...++|.|.++. +.+|+ +++++++++. |.+|||++++.++.+. +.+ .++
T Consensus 212 ~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~g~i~~~~l~~l~-~~~~~~~~~~-L~~t~y~~~l~~~~~~--~~~~~~~ 287 (352)
T PRK01198 212 TEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDEEKLKELL-AEDIEELVSA-LEGTKYGDVLSEALEE--YEETGSL 287 (352)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHccCCCCcCHHHHHHHh-cCCHHHHHHH-HhcCccHHHHHHHHHH--HHccCCH
Confidence 999999999999999999999999999999998885 89999 9999999999 8999999999987643 333 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccc
Q 018459 179 EIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLY 241 (355)
Q Consensus 179 e~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~ 241 (355)
..+|..+|+.|++...+.++........++..++..|+|++||.+|++++++++++|+++.++
T Consensus 288 ~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl~~~e~Ei~NL~~I~~gk~~~~~~e~I~~~L 350 (352)
T PRK01198 288 SVFEKALDNYLLEYMKKLSKRYPFSVEPILGYILAKEREVKNLRIIARGKENGLSPEEIRERL 350 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 788889999999999876654333357789999999999999999999999999999988654
No 7
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=99.73 E-value=3.3e-16 Score=153.21 Aligned_cols=213 Identities=16% Similarity=0.199 Sum_probs=175.4
Q ss_pred cCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCC-CCCCCHHHHHHHHHHhHHHHHHHHHHcc-cchHHHHHHHHHh
Q 018459 25 AGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNE-PSPLHTTTIVEKCTLKLVDEYKHMLCQA-TEPLSTFLEYITY 102 (355)
Q Consensus 25 ~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~-~~~~~~~~Ie~aL~~~La~ef~~l~~~a-~~~l~~fl~~~~~ 102 (355)
.|-++..+..+|+++++++|+...|.+|.|++.+.+. ...-+...+|.+|.+...+...++.+.. .++...+..++..
T Consensus 125 ~g~~~~~~l~~l~~~~~~~e~~~~L~~t~y~~~l~~~~~~~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~ 204 (343)
T TIGR02923 125 AGEFLEKRIKELAEAKTIEEIVEALEGTPYYGPLQEALAGNGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKT 204 (343)
T ss_pred ccccCHHHHHHHHcCCCHHHHHHHcCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4566788899999999999999999999999999653 1223678999999999988888876643 3445677788888
Q ss_pred hhhHHHHHHHHHhhcCCCChhHHhhhcccCC-CCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhhccccccccccHH
Q 018459 103 GHMIDNVVLIVTGTLHERDVQELLEKCHPLG-MFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIE 179 (355)
Q Consensus 103 ~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG-~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e~~ie 179 (355)
+.|+.|+.+++|||..|.+++++.+.++|.| .++. +.+++.+++++++++. |.+|||++.+.+++.. ...++.
T Consensus 205 eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~l~~~~l~~l~~~~~~~~~~~~-l~~t~y~~~l~~~~~~---~~~~~~ 280 (343)
T TIGR02923 205 EVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYELDEEKLAPLAHIESIDEVVSA-LDGTKYGEDISEVLSE---EEKSVA 280 (343)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHhhccCcccccCHHHHHHHHcCCCHHHHHHH-HhcCcchHHHHHHHhh---ccCcHH
Confidence 9999999999999999999999999999999 5574 8999999999999998 8999999999987751 123567
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccc
Q 018459 180 IMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLY 241 (355)
Q Consensus 180 ~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~ 241 (355)
.+|..++++.++..-+.++...-.-+-++.=+...|..++||+||+.++++++++|+++.++
T Consensus 281 ~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~Ei~nlr~I~~gk~~~l~~e~I~~~l 342 (343)
T TIGR02923 281 VFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIARGKEEGLPPEEIKEQL 342 (343)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 77778998888777554443222235688888899999999999999999999999987643
No 8
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=99.48 E-value=1e-13 Score=135.15 Aligned_cols=211 Identities=15% Similarity=0.185 Sum_probs=144.0
Q ss_pred CCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCCC---CCHHHHHHHHHHhHHHHHHHHHH-cccchHHHHHHHHHhh
Q 018459 28 LTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSP---LHTTTIVEKCTLKLVDEYKHMLC-QATEPLSTFLEYITYG 103 (355)
Q Consensus 28 L~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~~---~~~~~Ie~aL~~~La~ef~~l~~-~a~~~l~~fl~~~~~~ 103 (355)
++..++.+|.++++.+|+...|++|.|++.+.+.... -+...++.+|......+.-.... ........+-+++-..
T Consensus 120 ~~~~~l~~l~~~~~~~e~~~~L~~t~y~~~l~~~~~~~~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (337)
T PF01992_consen 120 FSFEDLKELLSAKDVEELIEALKGTPYYEVLRQALEDYEQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGME 199 (337)
T ss_dssp HHHHHHHHSSSHHHHHHHH-HTTT-THHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHH
T ss_pred CChhhHHHHhccCCHHHHHHHhcCcchHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 3467889999999999999999999999999764221 24566666666655555444444 4455556666888899
Q ss_pred hhHHHHHHHHHhhcCCCChhHHhhhcccCCCCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhhccccccccccHHHH
Q 018459 104 HMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIM 181 (355)
Q Consensus 104 ~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e~~ie~i 181 (355)
-|+.||.+++|+|..|.+++++...+.|-|.++. +.+|+.++|++++++. |.+|+|++.+...... ....++..+
T Consensus 200 iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l~~l~~~~~~~~~~~~-l~~t~y~~~~~~~~~~--~~~~~~~~~ 276 (337)
T PF01992_consen 200 IDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRLKALAEAEDVEEFLEA-LSGTPYGKLLSDAEEE--YEETSLSEL 276 (337)
T ss_dssp HHHHHHHHHHHTTTS---GGGT-----SS-SS--H-HHHHHHHTT-GGGGGS--TTSTTGGGTT--S---------HHHH
T ss_pred HHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHHHHHHHCCCHHHHHHH-HhcCchHHHHHHhhhh--hhhhhHHHH
Confidence 9999999999999999999999988999999985 8999999999999999 8999999999875533 222135666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccc
Q 018459 182 RNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLY 241 (355)
Q Consensus 182 en~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~ 241 (355)
|-.++++.++...+.+..-.-.-.-++.=+...|+.++||.+|+.+++++++++++..++
T Consensus 277 E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL~~I~~g~~~gl~~e~I~~~l 336 (337)
T PF01992_consen 277 ERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNLRTIIEGKRYGLSPEEIRERL 336 (337)
T ss_dssp HHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhc
Confidence 777888888877666543222246688888899999999999999999999999987653
No 9
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=99.31 E-value=1.8e-10 Score=113.62 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=167.7
Q ss_pred HHHHHHHHcCCChHHHHHhcCCCCchhhhh----CCCCCCCHHHHHHHHHHhHHHHHHHHHHcccchHHHHHHHHHhhhh
Q 018459 30 AADYNNLCQCETLDDIKMHLSATEYGPYLQ----NEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHM 105 (355)
Q Consensus 30 ~~dY~~L~q~~~ledi~~~L~~TdY~~~l~----~~~~~~~~~~Ie~aL~~~La~ef~~l~~~a~~~l~~fl~~~~~~~d 105 (355)
.+.-..++...|++++...+..|.|-..+. +....-+...||-+|.+.-.+++-....--.++= .|..|+...=|
T Consensus 129 ~~~~~~l~~a~t~eev~~~~~~~~y~~~~~~~~~~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~~-~~~~~~~~eID 207 (346)
T COG1527 129 FETLLTLAEAKTMEEVVETLEGTTYLAPLEEALRDYEDTGDIEPLENALDKAYYEDLLRSVNSEKGDE-LLREFLRLEID 207 (346)
T ss_pred HHHHHHHHhhcchHHHHHHHhcCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHH
Confidence 345567888999999999999988877765 2333457999999999998887776653222221 56667777889
Q ss_pred HHHHHHHHHhhcCCCChhHHhhhcccCCCCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhhccccccccc-cHHHHH
Q 018459 106 IDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDM-NIEIMR 182 (355)
Q Consensus 106 I~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e~-~ie~ie 182 (355)
+.|+.+++||+..+.+.+.....+.+-|.++. +..|..++++.+++++ +++|+|++.+...... +.+. .+...+
T Consensus 208 ~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~~~~-l~~t~yg~~l~~~~~~--~~~~~~~~~~e 284 (346)
T COG1527 208 RRNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEA-LEGTSYGDALSEYREE--YEEGGSIAVFE 284 (346)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHHHHH-cccCchHHHHHHHHHH--hhcCCchhHHH
Confidence 99999999999988888888888888889995 8999999999999999 7999999999877644 5553 345555
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccccC
Q 018459 183 NTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSN 243 (355)
Q Consensus 183 n~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p~ 243 (355)
..|+++++...-.+++...-.-.-++.-++.-|+-++||+||.+++..++++|.+..++++
T Consensus 285 ~~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~EV~NLr~Ia~~k~~~~~~e~i~~~~~~ 345 (346)
T COG1527 285 EALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLRWIAEGKANGLPREEIKELLVP 345 (346)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 6699999999988876411113468999999999999999999999999999998877653
No 10
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=96.91 E-value=0.041 Score=52.99 Aligned_cols=209 Identities=12% Similarity=0.132 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHHcccchHHHHHHHHHhhhhHHH-HHHHHHhhcCCCChhHHhhhcccCCCCcchhHHHh
Q 018459 65 LHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDN-VVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAV 143 (355)
Q Consensus 65 ~~~~~Ie~aL~~~La~ef~~l~~~a~~~l~~fl~~~~~~~dI~N-v~~llrg~~~~~~~~el~~~l~PlG~f~~l~~L~~ 143 (355)
+|+..+..-+..+| +..=.+.++.+...||+.| ++.+..|+- ..+|.|.|+.
T Consensus 23 ~~~~~f~~el~~~l-----------S~~D~~~~~ll~~~~D~~n~l~~l~~~~~----------~~~~~g~~~~------ 75 (271)
T PF10962_consen 23 YTVAEFKEELYPNL-----------SAKDAKLIDLLYLYFDNENLLRLLWKGEP----------APDPRGNYSE------ 75 (271)
T ss_pred CcHHHHHHHHHHhc-----------CHHHHHHHHHHHHhccHHHHHHHHHcCCC----------CcCcccCcCH------
Confidence 46666665554444 3444678899999999999 555544431 2357888773
Q ss_pred cCCHHHHHHHHhc----CCCChhhhhhhcccc-ccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHH
Q 018459 144 AQNMRELYRLVLV----DTPLAPYFSECITSE-DLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADR 218 (355)
Q Consensus 144 a~sveel~~~vL~----~Tp~~~~~~~~l~~~-~l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~ 218 (355)
+.+++.+.++-. +..+-.|+.+.+..- .-...+--..++.|...||+..-+ .+ ...+.+++.|+-|.
T Consensus 76 -~el~~~~~~~~~~~~~~~~lP~y~~~Fl~~y~~~~~e~~~~~e~~L~~~yy~~~~~----~~---n~Fl~~~~~F~~~l 147 (271)
T PF10962_consen 76 -EELEELIKAQKEGDEPDKGLPSYLKDFLEDYLNEEAEERIRHEDRLVAAYYAYAMK----SS---NPFLREWFEFNLEL 147 (271)
T ss_pred -HHHHHHHHHHHhcccccccccHHHHHHHHHHcccchhhccchHHHHHHHHHHHHHH----cc---CHHHHHHHHHHHHH
Confidence 223333333211 335666666655331 000011235677788877766533 12 35899999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHhccccCCCccCHhhHHhhcc--CCCHHHHHHHhccCccchHHHhhhccCCCCchhhHHHHH
Q 018459 219 RAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAV--CEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEE 296 (355)
Q Consensus 219 ~ni~iilns~~~~l~~ed~~~l~p~~G~L~~~~l~~L~~--a~d~e~~~~~l~~~~~Y~~l~~~~~~~~~~~lE~~~~~~ 296 (355)
|||-..+|+.+.+.++.. .++ |+ ++-.+.|.+ |.|++ +. ..+++...+.+....++-...|+.+...
T Consensus 148 RnilaAlr~R~~g~d~~~---~l~-g~---~~v~~~Lr~s~a~dFg-L~---~~~p~l~~~~~~~~~~~l~~~E~~Ld~~ 216 (271)
T PF10962_consen 148 RNILAALRARKLGFDVSK---ELV-GD---GEVAEALRQSNAPDFG-LP---EEFPYLPELIRIYEEEPLVERERLLDLL 216 (271)
T ss_pred HHHHHHHHHHHhCCCCcc---ccc-Cc---HHHHHHHHhcCCCCCC-CC---ccchhHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999887765443 223 22 333444443 33321 00 1123223333322211112236666666
Q ss_pred HHH-HHHHHhhccCcHHHHHHHHH
Q 018459 297 EVK-RLCLAFEQQVSISVKCSCLF 319 (355)
Q Consensus 297 ev~-~~~~sf~~qfs~~~~yaylk 319 (355)
.-+ +-+.++.+.|++-.+++|+-
T Consensus 217 rW~~Le~~~~~~~Fd~e~V~aY~l 240 (271)
T PF10962_consen 217 RWNWLEELSFGHYFDFEAVFAYLL 240 (271)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHH
Confidence 665 44688899999999998863
No 11
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=62.05 E-value=1.7e+02 Score=28.98 Aligned_cols=170 Identities=11% Similarity=0.146 Sum_probs=98.4
Q ss_pred CCCCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 018459 132 LGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMS 209 (355)
Q Consensus 132 lG~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~ 209 (355)
.|.+.+ ...|+-++|.|||-=. |.+|-||-++...-+ ....+.|...|-..-..+|..... -..++-..|.
T Consensus 25 ~glL~~~dY~nL~QCE~LEDlki~-Ls~Tdyg~fl~n~~s-----~lt~s~I~~~l~ekL~~ef~h~R~-~a~epl~tfl 97 (350)
T KOG2957|consen 25 AGLLKQADYNNLVQCENLEDLKIH-LSSTDYGNFLANEPS-----PLTVSVIDEKLREKLVDEFDHIRD-QADEPLSTFL 97 (350)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHh-hcccccccccccCCC-----CCcHHHHHHHHHHHHHHHHHHHHh-cccccHHHHH
Confidence 344443 6788999999999977 899999999964322 234566666666666677755433 3344444566
Q ss_pred HHHhHHHHHHHHHHHHHhhCCCCCHHHHh-ccccCCCccCHhhHHhhccCCCHHH-HHHHhccCccchHHHhhhccCCCC
Q 018459 210 DLLAFEADRRAVNITINSIGTELTRDDRR-KLYSNFGLLYPYGHEELAVCEDIDQ-VRGVMEKYPPYQSIFSKLSYGESQ 287 (355)
Q Consensus 210 ~~l~~eiD~~ni~iilns~~~~l~~ed~~-~l~p~~G~L~~~~l~~L~~a~d~e~-~~~~l~~~~~Y~~l~~~~~~~~~~ 287 (355)
+++.---=+-|+-..+++.-..-+..+.. +..| .|. .+.+..+.=|.+..+ +..+|-.+| ..+.|..+.
T Consensus 98 dyity~ymIdNv~lLitgtl~~r~~~ell~kChp-LG~--F~~l~ai~vA~n~~ely~~vlvdTp-la~~F~dc~----- 168 (350)
T KOG2957|consen 98 DYITYGYMIDNVILLITGTLHDRDVGELLEKCHP-LGS--FDQLEAIKVASNPAELYNAVLVDTP-LAPYFEDCL----- 168 (350)
T ss_pred HHHHHHHHHhHHHHHHhccccCCCHHHHHHhcCC-cCc--hhhhhhhhhcCCHHHHHHHHHhcCc-chHHHHhhc-----
Confidence 66554333446666665543332222222 3334 444 467888888888555 555667887 666665543
Q ss_pred chhhHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 018459 288 MLDKAFYEEEVKRLCLAFEQQVSISVKCSCLF 319 (355)
Q Consensus 288 ~lE~~~~~~ev~~~~~sf~~qfs~~~~yaylk 319 (355)
+-|+ |.+.-+++-+..+ .-+.+--||.|++
T Consensus 169 ~~~d-ld~mniEIiRn~l-YKaylE~fY~fc~ 198 (350)
T KOG2957|consen 169 SEED-LDEMNIEIIRNTL-YKAYLEDFYNFCK 198 (350)
T ss_pred CHhh-hhhhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 2122 4444444333222 1234455677773
No 12
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=35.49 E-value=84 Score=27.24 Aligned_cols=94 Identities=9% Similarity=0.214 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHhHHHH----HHHHHHcccchHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhh-hcccCCCCcc---
Q 018459 66 HTTTIVEKCTLKLVDE----YKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLE-KCHPLGMFDS--- 137 (355)
Q Consensus 66 ~~~~Ie~aL~~~La~e----f~~l~~~a~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~-~l~PlG~f~~--- 137 (355)
.-..+|+.-++.|.++ |+.|..++.-|++.|.+++.++=..+--.-+|++.++...++.+.= ..+..||--.
T Consensus 4 ~Q~~LE~~Yk~~L~~~~GI~Fn~L~titNmPI~RF~~~L~~~g~~~~Ym~lL~~~fNp~~v~~vMCR~~iSV~wdG~lYD 83 (134)
T PF12345_consen 4 PQQALEADYKRELKERFGIVFNNLFTITNMPIGRFGSFLERSGNLEDYMELLVDAFNPANVEGVMCRSQISVDWDGYLYD 83 (134)
T ss_pred CHHHHHHHHHHHHHHhcCceecchhhhhcCcHHHHHHHHHHccCHHHHHHHHHHhcCHHHHhhcccccceeECCCCeEeC
Confidence 4566777777777765 7899999999999999999999999999999999998888775542 3445555332
Q ss_pred -----hhHHHh---cCCHHHHHHHHhcCCC
Q 018459 138 -----IATLAV---AQNMRELYRLVLVDTP 159 (355)
Q Consensus 138 -----l~~L~~---a~sveel~~~vL~~Tp 159 (355)
+-.|.. ..++.|+...-+.+.|
T Consensus 84 CDFNQ~l~lp~~~~~~~i~dl~~~~l~~~~ 113 (134)
T PF12345_consen 84 CDFNQMLGLPLSGPRLHISDLLEEDLEGRP 113 (134)
T ss_pred ChhHHHcCCCCCCCCcCHHHHhhcccCCCc
Confidence 222222 2366676655455554
No 13
>PF06878 Pkip-1: Pkip-1 protein; InterPro: IPR009672 This family consists of several Pkip-1 proteins, which seem to be specific to Nucleopolyhedroviruses. The function of this family is unknown although it has been found that Pkip-1 is not essential for virus replication in cell culture or by in vivo intrahaemocoelic injection [].
Probab=30.67 E-value=4e+02 Score=23.90 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCC-CCCHHHHhccccCCCc--cCHhhHHhh
Q 018459 179 EIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGT-ELTRDDRRKLYSNFGL--LYPYGHEEL 255 (355)
Q Consensus 179 e~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~-~l~~ed~~~l~p~~G~--L~~~~l~~L 255 (355)
..-+|.|-+.|=.....|-++.+. +...-.+++-.-||..-+.==+.++.. +.+.+++...+-..+- +++++++.|
T Consensus 7 ~~K~nnl~~qy~~KV~~y~kk~~~-~e~~~~em~~lsA~i~G~~EQl~~L~~~~~~~~~k~dFindl~eLd~~~~~ie~l 85 (163)
T PF06878_consen 7 RAKENNLRDQYENKVKSYFKKPKK-DENFANEMLILSADIFGQEEQLYSLLSANATDEEKLDFINDLSELDFDNEEIESL 85 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-cccHHHHHHHHHHHHHhHHHHHHHHHccccchHHHHHHHhhhhhcCCCHHHHHHH
Confidence 455677777776666666655332 355677788888888877766667765 6777777778877884 459999999
Q ss_pred ccCCCHHHHHHHhccCccchHHHhhhccCCCCchh---hHHHHHHHH-HH-HHHhhccCcHHHHHHHHHhh-chhhhccc
Q 018459 256 AVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLD---KAFYEEEVK-RL-CLAFEQQVSISVKCSCLFRG-SILFISCI 329 (355)
Q Consensus 256 ~~a~d~e~~~~~l~~~~~Y~~l~~~~~~~~~~~lE---~~~~~~ev~-~~-~~sf~~qfs~~~~yaylklK-NI~~IacI 329 (355)
....|.+++...--+... ..+..+ ..++ ..|.....+ +. +.++++.-.-...=--+.+| |+++.-|+
T Consensus 86 ~~~~~~~~~l~~ky~~~~---~~~~~~----~~~~~n~~~F~kvl~qFv~Krn~~rk~~~~~lL~ELV~LKs~lIKHLC~ 158 (163)
T PF06878_consen 86 CARKDNDEYLLKKYNADR---LPEAIQ----KVFDKNSKKFIKVLEQFVDKRNAYRKNNNNALLDELVLLKSNLIKHLCI 158 (163)
T ss_pred HhcccHHHHHHHhcchhh---hHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHH
Confidence 998888865543222111 111111 0111 013333332 22 24455555555555566777 88877665
Q ss_pred c
Q 018459 330 P 330 (355)
Q Consensus 330 ~ 330 (355)
-
T Consensus 159 m 159 (163)
T PF06878_consen 159 M 159 (163)
T ss_pred H
Confidence 3
No 14
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=29.42 E-value=28 Score=31.47 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=29.4
Q ss_pred hcccCCCCcc----hhHHHhcCCHHHHHHHHhcCCCChhh
Q 018459 128 KCHPLGMFDS----IATLAVAQNMRELYRLVLVDTPLAPY 163 (355)
Q Consensus 128 ~l~PlG~f~~----l~~L~~a~sveel~~~vL~~Tp~~~~ 163 (355)
.-.|+|+|++ |++=...++.+|++.+ |..+|..++
T Consensus 78 YANPLaeF~~R~~~Ie~Ws~~~~p~el~~a-ld~~pWr~P 116 (178)
T PF12249_consen 78 YANPLAEFDERNAEIESWSELTDPDELLAA-LDSSPWRAP 116 (178)
T ss_pred hcCchhhHHHHHHHHHHHhccCCHHHHHHH-HHhCCCCCC
Confidence 5679999996 6777789999999999 899996654
No 15
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=28.24 E-value=2.4e+02 Score=23.90 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=75.0
Q ss_pred CchhhhhCCCCCCCHHHHHHHHHHhHHHHHHHHHHcccchHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccC
Q 018459 53 EYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPL 132 (355)
Q Consensus 53 dY~~~l~~~~~~~~~~~Ie~aL~~~La~ef~~l~~~a~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~Pl 132 (355)
.|.+-.. +..++..+|..+-.+.+..-.......++....+.+.+.+-..+|.+..--=+--.+.=++|++..++-+
T Consensus 7 AY~~~~~---~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~~~dl~~~~N~LP~eLRa~lisL 83 (122)
T PRK12794 7 AYARAAQ---PTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIFASDVADPDNPLPIELRARIFNL 83 (122)
T ss_pred HHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 4777655 2358999999999999999888888866777899999999999999887766666666678999999999
Q ss_pred CCCcc---hhHHHhcCCHHHHHH
Q 018459 133 GMFDS---IATLAVAQNMRELYR 152 (355)
Q Consensus 133 G~f~~---l~~L~~a~sveel~~ 152 (355)
|.|-. .+.+....+++.|++
T Consensus 84 ~~fv~~~t~~v~~~~~~l~~LI~ 106 (122)
T PRK12794 84 SLFVQKHSSKVLRKPEKLTPLID 106 (122)
T ss_pred HHHHHHHHHHHHcCcccchHHHH
Confidence 98874 344444446666664
Done!