Query 018459
Match_columns 355
No_of_seqs 132 out of 315
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9m_A V-type ATP synthase sub 100.0 5.4E-58 1.8E-62 442.7 21.2 308 12-343 4-320 (323)
2 1v9m_A V-type ATP synthase sub 99.3 1.5E-11 5.1E-16 118.0 15.9 198 26-242 117-321 (323)
3 2jby_A M11L protein; apoptosis 27.2 1.3E+02 0.0044 24.7 5.9 48 73-128 49-96 (145)
4 3bjv_A RMPA; alpha/beta three 25.9 12 0.00041 31.1 -0.5 38 25-62 120-158 (161)
5 2oqt_A Hypothetical protein SP 19.0 15 0.00053 30.5 -1.2 37 25-61 121-158 (162)
6 3l9k_W Dynein intermediate cha 17.0 42 0.0015 21.8 0.8 30 43-77 4-33 (38)
7 3lqv_P Splicing factor 3B subu 12.9 48 0.0017 21.6 0.3 16 231-246 22-37 (39)
8 3fse_A Two-domain protein cont 12.9 8.4E+02 0.029 23.0 9.3 132 66-228 207-343 (365)
9 2fjc_A Antigen TPF1; mini ferr 12.0 5.8E+02 0.02 20.6 9.0 24 191-214 118-142 (156)
10 2itb_A TRNA-(MS(2)IO(6)A)-hydr 11.2 6.2E+02 0.021 22.3 7.0 31 188-218 154-186 (206)
No 1
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=100.00 E-value=5.4e-58 Score=442.71 Aligned_cols=308 Identities=15% Similarity=0.136 Sum_probs=274.2
Q ss_pred CCCchhhhhHhHhcCCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhCCCCCCCHHHHHHHHHHhHHHHHHHHHHcccc
Q 018459 12 HGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATE 91 (355)
Q Consensus 12 ~~gY~~arVRg~k~~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~~~~~~~~~~Ie~aL~~~La~ef~~l~~~a~~ 91 (355)
+|||++||||||+++||++++|.+|++ +|++|++.+|++|+|++++++++ ++.||.+|+++++++|+.+++++++
T Consensus 4 ~y~y~~arvR~~~~~lL~~~~~~~L~~-~sl~e~~~~L~~t~Y~~~l~~~~----~~~iE~~L~~~l~~~~~~l~~~~~~ 78 (323)
T 1v9m_A 4 DFAYLNARVRVRRGTLLKESFFQEALD-LSFADFLRLLSETVYGGELAGQG----LPDVDRAVLRTQAKLVGDLPRLVTG 78 (323)
T ss_dssp -CHHHHHHHHHHHTTSCCHHHHHHHTT-CCHHHHHHHHHTSGGGGGCCCSS----HHHHHHHHHHHHHHHTTTHHHHCCH
T ss_pred cchhHhHHHHHHHHhccCHHHHHHHHh-CCHHHHHHHHhcCchHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 499999999999999999999999999 99999999999999999998764 7899999999999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhhcccCCCCcc--hhHHHhcCCHHHHHHHHhcCCCChhhhhhhcc
Q 018459 92 PLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECIT 169 (355)
Q Consensus 92 ~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~f~~--l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~ 169 (355)
+.++|+++++++|||+||+.++||+.+|++.+++. |+| |+|+. +++|+.++|++|+++. |.+|||++++.++..
T Consensus 79 ~~~~~~~~~~~~~di~Nik~ilr~~~~~~~~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~~-L~~t~y~~~l~~~~~ 154 (323)
T 1v9m_A 79 EAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQV-LAVPGHPLARALRAV 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHHH-HHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc--cCC-CCCCHHHHHHHHhCCCHHHHHHH-HhccccchHHHHHHH
Confidence 99999999999999999999999999999999988 999 99997 8999999999999976 899999988877654
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhccccCCCc-cC
Q 018459 170 SEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL-LY 248 (355)
Q Consensus 170 ~~~l~e~~ie~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p~~G~-L~ 248 (355)
. +.+.+++.+|+.|||+||++++++|+++++ ++|.++++++||++||+|++|++++.++ +..++|+||+ ++
T Consensus 155 ~--~~~~~~~~~e~~Ldk~y~~~~~~~~~~~~~---~~l~~~~~~~iD~~Ni~~~lr~~~~~~~---i~~~li~~G~~l~ 226 (323)
T 1v9m_A 155 L--RETQDLARVEALLAKRFFEDVAKAAKGLDQ---PALRDYLALEVDAENLRTAFKLQGSGLA---PDAFFLKGGRFVD 226 (323)
T ss_dssp H--TTCCCHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCC---GGGTCCSSCSSCC
T ss_pred H--HHcCCcHHHHHHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHhccCCCCccC
Confidence 2 444488999999999999999999987665 7999999999999999999999998886 5567778897 99
Q ss_pred HhhHHhhccCCCHHHHHHHhccCccchHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccCcHHHHHHHHHhh-----ch
Q 018459 249 PYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQVSISVKCSCLFRG-----SI 323 (355)
Q Consensus 249 ~~~l~~L~~a~d~e~~~~~l~~~~~Y~~l~~~~~~~~~~~lE~~~~~~ev~~~~~sf~~qfs~~~~yaylklK-----NI 323 (355)
++++++|+++++ ++.+.+++++ |+.+++.. +-..+|+++....++.++.++.+|||++|++||+++| ||
T Consensus 227 ~~~l~~l~~~~~--~~~~~l~~t~-Y~~~~~~~---~~~~~E~~~~~~~~~~~~~~~~~~f~~~~~~ayl~~kE~Ei~nl 300 (323)
T 1v9m_A 227 RVRFARLMEGDY--AVLDELSGTP-FSGLSGVR---DLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRL 300 (323)
T ss_dssp HHHHHHHHTTCG--GGGGSCTTST-TGGGTTCC---SHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcH--HHHHHHcCCC-HHHHhccC---CHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999988 9999999987 88877642 1258999999999998888999999999999999999 99
Q ss_pred hhhc-cccCCccchhhhhcCC
Q 018459 324 LFIS-CIPHFPLTRDVIFHLP 343 (355)
Q Consensus 324 ~~Ia-cI~~~~~~~~~~~~~~ 343 (355)
+||+ ||+++ ...|.|-..=
T Consensus 301 ~~I~~~~~~~-l~~e~i~~~l 320 (323)
T 1v9m_A 301 RLLARRAYFG-LPRAQVEEEV 320 (323)
T ss_dssp HHHHHHHHHT-CCHHHHHHHS
T ss_pred HHHHHHHHcC-CCHHHHHHHH
Confidence 9999 99997 3566665443
No 2
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=99.35 E-value=1.5e-11 Score=117.95 Aligned_cols=198 Identities=9% Similarity=0.011 Sum_probs=151.2
Q ss_pred CCCCHHHHHHHHcCCChHHHHHhcCCCCchhhhhC----CCCCCCHHHHHHHHHHhHHHHHHHHHHcccchHHHHHHHHH
Q 018459 26 GLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQN----EPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYIT 101 (355)
Q Consensus 26 ~LL~~~dY~~L~q~~~ledi~~~L~~TdY~~~l~~----~~~~~~~~~Ie~aL~~~La~ef~~l~~~a~~~l~~fl~~~~ 101 (355)
|-++.++..+|+++++++|+...|++|.|+..++. .... ....+|.+|.+...+.+.+..+-.++ ..+.+++.
T Consensus 117 g~~~~~~l~~l~~a~~~~el~~~L~~t~y~~~l~~~~~~~~~~-~~~~~e~~Ldk~y~~~~~~~~~~~~~--~~l~~~~~ 193 (323)
T 1v9m_A 117 GTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQ-DLARVEALLAKRFFEDVAKAAKGLDQ--PALRDYLA 193 (323)
T ss_dssp CSSCHHHHHHHHHSSSHHHHHHHHHTTTCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHC---------CHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHhccccchHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhcCh--HHHHHHHH
Confidence 45678889999999999999999999988765544 2222 77889999999999888776654444 56777788
Q ss_pred hhhhHHHHHHHHHhhcCCCChhHHhhhcccCCC-Cc--chhHHHhcCCHHHHHHHHhcCCCChhhhhhhccccccccccH
Q 018459 102 YGHMIDNVVLIVTGTLHERDVQELLEKCHPLGM-FD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNI 178 (355)
Q Consensus 102 ~~~dI~Nv~~llrg~~~~~~~~el~~~l~PlG~-f~--~l~~L~~a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e~~i 178 (355)
.+-|+.|+++++|++..|.+ +...++|.|. ++ .+.+++.+++ ++.+. |.+|||++.+... ++
T Consensus 194 ~~iD~~Ni~~~lr~~~~~~~---i~~~li~~G~~l~~~~l~~l~~~~~--~~~~~-l~~t~Y~~~~~~~---------~~ 258 (323)
T 1v9m_A 194 LEVDAENLRTAFKLQGSGLA---PDAFFLKGGRFVDRVRFARLMEGDY--AVLDE-LSGTPFSGLSGVR---------DL 258 (323)
T ss_dssp HHHHHHHHHHHHHTTTSCCC---GGGTCCSSCSSCCHHHHHHHHTTCG--GGGGS-CTTSTTGGGTTCC---------SH
T ss_pred HHHHHHHHHHHHHHHHcCCC---HHHhccCCCCccCHHHHHHHHhCcH--HHHHH-HcCCCHHHHhccC---------CH
Confidence 89999999999999999986 8889999997 87 3889999888 78877 8999999988643 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhHHHHHHHHHHHHHhhCCCCCHHHHhcccc
Q 018459 179 EIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYS 242 (355)
Q Consensus 179 e~ien~L~K~Y~e~~~~~~~~l~~~~~~im~~~l~~eiD~~ni~iilns~~~~l~~ed~~~l~p 242 (355)
..+|..+++..++..-+ +..-.-.-.-++.=+...|...+||+||+.+++.++++++++.++.
T Consensus 259 ~~~E~~~~~~~~~~~~~-~~~~~f~~~~~~ayl~~kE~Ei~nl~~I~~~~~~~l~~e~i~~~l~ 321 (323)
T 1v9m_A 259 KALERGLRCVLLKEAKK-GVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHGG-GGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Confidence 45555577766555444 3221111356777778889999999999999999999999886543
No 3
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=27.22 E-value=1.3e+02 Score=24.71 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHhHHHHHHHHHHcccchHHHHHHHHHhhhhHHHHHHHHHhhcCCCChhHHhhh
Q 018459 73 KCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEK 128 (355)
Q Consensus 73 aL~~~La~ef~~l~~~a~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~~~~el~~~ 128 (355)
..++..+.+|+.+.. |+..=.-.|+|+||+..+.-.+.+..|.-.++.
T Consensus 49 ~Ik~~Y~~~fn~l~d--------~m~~di~~YnI~nvkn~l~~~l~D~rPSVkLAt 96 (145)
T 2jby_A 49 FINETYAKNYDTLYD--------IMERDILSYNIVNIKNTLTFALRDASPSVKLAT 96 (145)
T ss_dssp HHHHHTHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHhhHHHHHH--------HHHhhhhhhhHHHHHHHHHHHHhcCCchhHHHH
Confidence 456777888888874 444444679999999999777888877754443
No 4
>3bjv_A RMPA; alpha/beta three layer sandwich, transferase; 2.40A {Streptococcus mutans}
Probab=25.92 E-value=12 Score=31.15 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=28.7
Q ss_pred cCCCCHHH-HHHHHcCCChHHHHHhcCCCCchhhhhCCC
Q 018459 25 AGLLTAAD-YNNLCQCETLDDIKMHLSATEYGPYLQNEP 62 (355)
Q Consensus 25 ~~LL~~~d-Y~~L~q~~~ledi~~~L~~TdY~~~l~~~~ 62 (355)
++++.+++ ..+|.++.+.+|+...|.+.+|..++++++
T Consensus 120 ~~~l~d~~~~~~L~~~~~~~ei~~~l~~~~~~~~~~~~~ 158 (161)
T 3bjv_A 120 IALFELDHSIERLVNCKTPEEVLAMVEESKSSPYLEGLD 158 (161)
T ss_dssp HHHHTSTTHHHHHHTCCSHHHHHHHHHHGGGSGGGCC--
T ss_pred HHHHcCHHHHHHHHhCCCHHHHHHHHHhccCccccccCc
Confidence 44555555 556999999999999998888999887753
No 5
>2oqt_A Hypothetical protein SPY0176; APC29699, putative PTS IIA domain, streptococcus pyogenes M1 GAS, structural genomics, PSI-2; 2.41A {Streptococcus pyogenes serotype M1}
Probab=19.02 E-value=15 Score=30.52 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=23.9
Q ss_pred cCCCCHH-HHHHHHcCCChHHHHHhcCCCCchhhhhCC
Q 018459 25 AGLLTAA-DYNNLCQCETLDDIKMHLSATEYGPYLQNE 61 (355)
Q Consensus 25 ~~LL~~~-dY~~L~q~~~ledi~~~L~~TdY~~~l~~~ 61 (355)
++++.++ -..+|.++.+.+|+...|.+.+|..++++.
T Consensus 121 ~~~l~d~~~~~~L~~~~~~~ei~~~l~~~~~~~~~~~~ 158 (162)
T 2oqt_A 121 VALFELDNAIERLVACQSPKEVLEMVEESKDSPYLEGM 158 (162)
T ss_dssp HHHHTSTTHHHHHHTCCSHHHHHHHHHHHTCC------
T ss_pred HHHHcCHHHHHHHHhCCCHHHHHHHHHhCcCccccccC
Confidence 3444444 455699999999999999887888887664
No 6
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=17.03 E-value=42 Score=21.80 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHhcCCCCchhhhhCCCCCCCHHHHHHHHHHh
Q 018459 43 DDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLK 77 (355)
Q Consensus 43 edi~~~L~~TdY~~~l~~~~~~~~~~~Ie~aL~~~ 77 (355)
||-...+...++.+|++. +...||+||.++
T Consensus 4 EEk~~I~~S~~F~~F~~r-----sskviERAL~e~ 33 (38)
T 3l9k_W 4 EQKQMIILSENFQRFVVR-----AGRVIERALSEN 33 (38)
T ss_dssp HHHHHHHTSHHHHHHHHH-----HHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHH-----HHHHHHHHHccc
Confidence 344455556667777754 678999999754
No 7
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=12.94 E-value=48 Score=21.63 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=12.6
Q ss_pred CCCHHHHhccccCCCc
Q 018459 231 ELTRDDRRKLYSNFGL 246 (355)
Q Consensus 231 ~l~~ed~~~l~p~~G~ 246 (355)
.+|.|+...++|.|.+
T Consensus 22 pltDEeLD~mLP~GYk 37 (39)
T 3lqv_P 22 PLSDEELDAMFPEGYK 37 (39)
T ss_dssp CCCHHHHHHTCCSSEE
T ss_pred CCCHHHHHHhCCCCcc
Confidence 3899998899996444
No 8
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=12.90 E-value=8.4e+02 Score=22.99 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHcccchHHHHHHHHHhhhhHHHHHHHHHhhcCCC--ChhHHhhhcccCCCCcchhHHHh
Q 018459 66 HTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHER--DVQELLEKCHPLGMFDSIATLAV 143 (355)
Q Consensus 66 ~~~~Ie~aL~~~La~ef~~l~~~a~~~l~~fl~~~~~~~dI~Nv~~llrg~~~~~--~~~el~~~l~PlG~f~~l~~L~~ 143 (355)
++.++-.+|+.-+..|.-- .+.++.|..+=.=..++.+++....+. ..+.|.++++-+|.-+...+..
T Consensus 207 ~~~~~v~~ln~a~~ge~~~---------~~a~e~~a~~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~- 276 (365)
T 3fse_A 207 TKGDIVRGLNTALGGERYS---------LEALEKYTEKESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPSLSANI- 276 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC--
T ss_pred chhhhhHHHHHHhhcChhH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcch-
Confidence 5778888888888777544 233333333333333444444433332 2346777888888887653322
Q ss_pred cCCHHHHHHHHhcCCCChhhhhhhccccccccccHHHHHHHHHH--HHHHHHHHHHHhc-CCchHHHHHHHHhHHHHHHH
Q 018459 144 AQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYK--AYLEDFYKFCQKL-GGATAEIMSDLLAFEADRRA 220 (355)
Q Consensus 144 a~sveel~~~vL~~Tp~~~~~~~~l~~~~l~e~~ie~ien~L~K--~Y~e~~~~~~~~l-~~~~~~im~~~l~~eiD~~n 220 (355)
.+.+.. +..+ +.. .+ +++++|.+|.- .=.++.++.|+.. ...++++|.+++. |+.+
T Consensus 277 ----~~~~a~-~~~~-----~~~---~~-----~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~---~l~~ 335 (365)
T 3fse_A 277 ----ANQYAK-VKTA-----LTG---SD-----DIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYK---DLVK 335 (365)
T ss_dssp ---------------------------C-----HHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH---HHHH
T ss_pred ----hHHHHH-HHHH-----hcC---CC-----hHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHH---HHHH
Confidence 222222 1222 211 11 45666666542 2245667777764 4449999999976 8888
Q ss_pred HHHHHHhh
Q 018459 221 VNITINSI 228 (355)
Q Consensus 221 i~iilns~ 228 (355)
++-.+..+
T Consensus 336 ~e~~~~~l 343 (365)
T 3fse_A 336 YEQRLVSL 343 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88666555
No 9
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=12.02 E-value=5.8e+02 Score=20.58 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCc-hHHHHHHHHhH
Q 018459 191 EDFYKFCQKLGGA-TAEIMSDLLAF 214 (355)
Q Consensus 191 e~~~~~~~~l~~~-~~~im~~~l~~ 214 (355)
....+.|.+.++. |+++|.+++.-
T Consensus 118 r~~i~~a~~~~D~~T~dll~~il~~ 142 (156)
T 2fjc_A 118 SQTQVLAAESGDAVTDGIITDILRT 142 (156)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4555667766666 99999999874
No 10
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=11.18 E-value=6.2e+02 Score=22.29 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCc--hHHHHHHHHhHHHHH
Q 018459 188 AYLEDFYKFCQKLGGA--TAEIMSDLLAFEADR 218 (355)
Q Consensus 188 ~Y~e~~~~~~~~l~~~--~~~im~~~l~~eiD~ 218 (355)
.+|++||.++.+..+. -.+=..+++..|+.+
T Consensus 154 rHy~~yl~LA~~y~~~~~v~~R~~~l~~~Eael 186 (206)
T 2itb_A 154 RHYQGYLKLAHNYGDEADIARCVELVRAAEMEL 186 (206)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 7899999999886664 334467777777764
Done!