Query 018460
Match_columns 355
No_of_seqs 219 out of 1406
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 3E-72 6.5E-77 542.4 28.5 245 110-354 28-272 (302)
2 COG0861 TerC Membrane protein 100.0 3E-50 6.5E-55 381.9 24.5 202 137-352 10-212 (254)
3 PF03741 TerC: Integral membra 100.0 4.2E-49 9.2E-54 357.8 20.6 183 148-351 1-183 (183)
4 TIGR03716 R_switched_YkoY inte 100.0 1.2E-47 2.6E-52 356.4 20.8 173 152-352 2-174 (215)
5 TIGR03717 R_switched_YjbE inte 100.0 7.9E-43 1.7E-47 315.2 22.3 174 147-352 2-176 (176)
6 PRK14013 hypothetical protein; 100.0 1.8E-41 3.8E-46 330.7 24.5 231 115-351 3-301 (338)
7 COG2899 Uncharacterized protei 100.0 1.7E-32 3.6E-37 261.8 10.4 236 114-352 3-309 (346)
8 PF04332 DUF475: Protein of un 99.9 9E-28 2E-32 230.6 7.4 192 159-354 1-264 (294)
9 PF01914 MarC: MarC family int 97.7 0.0028 6.1E-08 58.9 17.1 74 156-231 15-92 (203)
10 PRK10995 inner membrane protei 97.6 0.0072 1.6E-07 56.8 18.5 72 157-230 20-95 (221)
11 COG1971 Predicted membrane pro 97.6 0.0094 2E-07 55.5 18.8 173 146-355 2-190 (190)
12 TIGR00427 membrane protein, Ma 97.5 0.0085 1.8E-07 55.8 17.6 74 155-230 17-94 (201)
13 PRK10739 putative antibiotic t 97.5 0.013 2.7E-07 54.7 18.5 73 156-230 15-91 (197)
14 PRK11469 hypothetical protein; 97.4 0.027 5.8E-07 52.0 18.7 170 147-354 3-187 (188)
15 PRK11111 hypothetical protein; 97.3 0.027 5.8E-07 53.1 17.8 71 158-230 23-97 (214)
16 COG2095 MarC Multiple antibiot 97.2 0.021 4.5E-07 53.6 16.4 77 153-231 15-95 (203)
17 PRK10323 cysteine/O-acetylseri 97.2 0.15 3.2E-06 46.6 20.8 86 141-230 3-94 (195)
18 PF03741 TerC: Integral membra 97.1 0.006 1.3E-07 56.0 11.1 76 144-228 106-182 (183)
19 COG0861 TerC Membrane protein 97.0 0.012 2.7E-07 56.8 12.7 78 144-230 134-212 (254)
20 TIGR03717 R_switched_YjbE inte 96.7 0.0094 2E-07 54.5 9.1 74 277-351 2-81 (176)
21 TIGR03716 R_switched_YkoY inte 96.7 0.061 1.3E-06 51.0 14.5 78 144-230 96-174 (215)
22 PF01810 LysE: LysE type trans 96.7 0.37 8.1E-06 42.9 18.8 69 157-231 7-82 (191)
23 PF03596 Cad: Cadmium resistan 96.5 0.068 1.5E-06 49.8 13.2 73 157-231 4-78 (191)
24 COG1280 RhtB Putative threonin 96.4 0.76 1.6E-05 42.6 19.5 78 149-230 12-94 (208)
25 TIGR02840 spore_YtaF putative 95.8 1.6 3.4E-05 40.9 18.7 78 149-230 2-82 (206)
26 PRK09304 arginine exporter pro 95.7 1.6 3.5E-05 40.1 20.4 78 147-230 9-91 (207)
27 COG2119 Predicted membrane pro 95.7 0.44 9.5E-06 44.6 14.2 164 150-353 11-186 (190)
28 PRK10958 leucine export protei 95.7 1.8 3.8E-05 40.1 20.2 73 152-230 19-98 (212)
29 TIGR00949 2A76 The Resistance 95.3 2 4.3E-05 38.3 17.3 68 158-229 3-75 (185)
30 PRK10229 threonine efflux syst 94.8 3.1 6.8E-05 37.8 19.2 79 148-230 10-93 (206)
31 TIGR03718 R_switched_Alx integ 94.5 0.21 4.6E-06 49.6 9.1 76 275-351 63-147 (302)
32 TIGR00948 2a75 L-lysine export 92.6 0.97 2.1E-05 40.3 9.2 67 158-230 6-77 (177)
33 PRK10520 rhtB homoserine/homos 90.8 13 0.00027 33.9 19.2 77 150-230 13-94 (205)
34 PRK11469 hypothetical protein; 86.5 15 0.00032 34.0 12.1 98 123-229 70-184 (188)
35 COG1279 Lysine efflux permease 84.7 37 0.0008 32.3 19.0 72 150-230 12-91 (202)
36 PF07690 MFS_1: Major Facilita 81.6 43 0.00094 30.8 19.0 73 150-224 92-166 (352)
37 TIGR00779 cad cadmium resistan 78.4 2.9 6.2E-05 39.3 4.2 73 157-233 4-79 (193)
38 COG4300 CadD Predicted permeas 74.2 14 0.00031 34.8 7.5 82 147-232 5-90 (205)
39 COG1971 Predicted membrane pro 69.2 1E+02 0.0022 29.1 12.1 75 147-229 107-186 (190)
40 TIGR02840 spore_YtaF putative 68.0 34 0.00074 32.0 8.7 72 280-353 3-83 (206)
41 PF11298 DUF3099: Protein of u 59.7 34 0.00074 27.5 6.0 51 176-228 11-63 (73)
42 COG2215 ABC-type uncharacteriz 58.6 2.1E+02 0.0046 28.9 19.7 64 289-352 233-300 (303)
43 PRK10489 enterobactin exporter 57.9 1.9E+02 0.0041 28.2 13.2 116 122-239 291-417 (417)
44 TIGR00901 2A0125 AmpG-related 55.8 1.9E+02 0.004 27.4 21.7 61 147-209 87-147 (356)
45 TIGR02865 spore_II_E stage II 54.1 2.8E+02 0.0061 31.1 14.0 59 291-349 196-255 (764)
46 TIGR00900 2A0121 H+ Antiporter 53.6 1.8E+02 0.004 26.7 24.6 67 142-210 91-157 (365)
47 COG0053 MMT1 Predicted Co/Zn/C 51.9 2.5E+02 0.0054 27.8 15.6 58 267-324 142-201 (304)
48 TIGR01937 nqrB NADH:ubiquinone 48.8 1E+02 0.0023 32.3 9.0 28 107-134 44-71 (413)
49 TIGR00920 2A060605 3-hydroxy-3 48.3 2.1E+02 0.0045 33.0 11.7 47 122-168 97-143 (886)
50 KOG2881 Predicted membrane pro 44.7 1.3E+02 0.0028 30.1 8.5 66 159-230 82-151 (294)
51 PRK14013 hypothetical protein; 44.6 93 0.002 31.8 7.7 77 145-229 223-301 (338)
52 PRK10019 nickel/cobalt efflux 43.8 3.4E+02 0.0073 27.0 21.8 33 122-154 12-44 (279)
53 KOG2881 Predicted membrane pro 43.6 98 0.0021 30.9 7.5 70 281-353 80-152 (294)
54 PF02535 Zip: ZIP Zinc transpo 41.4 3.2E+02 0.0068 25.9 14.3 21 210-230 268-288 (317)
55 PRK06814 acylglycerophosphoeth 40.4 6E+02 0.013 28.8 19.7 53 157-211 122-174 (1140)
56 PF02460 Patched: Patched fami 40.1 1.8E+02 0.0039 32.2 9.8 20 152-171 286-305 (798)
57 COG2119 Predicted membrane pro 39.8 1.3E+02 0.0029 28.4 7.5 59 295-353 26-87 (190)
58 PRK10213 nepI ribonucleoside t 38.8 3.9E+02 0.0085 26.3 25.4 59 150-210 115-173 (394)
59 PF06695 Sm_multidrug_ex: Puta 37.7 86 0.0019 27.0 5.5 45 291-335 5-53 (121)
60 PRK05349 Na(+)-translocating N 37.6 1.8E+02 0.0039 30.5 8.7 26 109-134 48-73 (405)
61 TIGR00894 2A0114euk Na(+)-depe 35.3 4.6E+02 0.01 26.1 14.1 66 150-217 138-206 (465)
62 PRK10473 multidrug efflux syst 34.6 4.2E+02 0.0092 25.4 24.4 60 155-216 103-164 (392)
63 PF11139 DUF2910: Protein of u 33.7 3.8E+02 0.0082 24.6 17.6 23 208-230 68-90 (214)
64 KOG2532 Permease of the major 32.3 6.1E+02 0.013 26.6 12.4 63 155-220 140-206 (466)
65 TIGR00711 efflux_EmrB drug res 30.4 5.4E+02 0.012 25.3 11.8 50 158-209 105-154 (485)
66 COG2095 MarC Multiple antibiot 30.4 2.2E+02 0.0047 26.9 7.4 65 288-352 20-94 (203)
67 PF01169 UPF0016: Uncharacteri 30.2 2.7E+02 0.0058 22.2 6.9 54 292-345 20-78 (78)
68 PF00689 Cation_ATPase_C: Cati 30.1 3.7E+02 0.008 23.4 10.4 23 178-200 123-145 (182)
69 PRK10621 hypothetical protein; 28.6 5.2E+02 0.011 24.5 20.9 37 193-229 86-124 (266)
70 PRK10995 inner membrane protei 28.3 2.2E+02 0.0048 26.7 7.1 63 289-351 22-94 (221)
71 PRK05122 major facilitator sup 27.7 5.6E+02 0.012 24.6 14.9 115 122-238 281-398 (399)
72 TIGR00880 2_A_01_02 Multidrug 27.7 2.8E+02 0.0061 21.2 13.6 72 147-220 55-128 (141)
73 TIGR00898 2A0119 cation transp 27.1 6.5E+02 0.014 25.2 13.3 60 155-217 192-251 (505)
74 PRK08633 2-acyl-glycerophospho 26.5 9.5E+02 0.021 27.0 22.7 54 152-207 112-165 (1146)
75 COG1280 RhtB Putative threonin 25.9 1.7E+02 0.0036 27.1 5.8 26 326-351 68-93 (208)
76 PRK11652 emrD multidrug resist 25.3 6.1E+02 0.013 24.3 25.3 50 159-210 112-161 (394)
77 TIGR00949 2A76 The Resistance 24.9 2.9E+02 0.0064 24.3 6.9 28 323-350 43-74 (185)
78 PF05661 DUF808: Protein of un 24.4 1.9E+02 0.0041 29.2 6.0 17 209-225 88-104 (295)
79 PRK01024 Na(+)-translocating N 23.8 4.6E+02 0.01 28.3 9.0 31 104-134 41-71 (503)
80 PHA00726 hypothetical protein 23.5 1.2E+02 0.0027 25.3 3.8 68 153-227 9-87 (89)
81 PRK10229 threonine efflux syst 22.9 2.6E+02 0.0056 25.3 6.3 21 330-350 71-91 (206)
82 PRK03545 putative arabinose tr 22.9 6.9E+02 0.015 24.1 24.7 52 164-217 118-171 (390)
83 TIGR02908 CoxD_Bacillus cytoch 22.1 5.3E+02 0.011 22.4 9.8 37 156-192 62-99 (110)
84 TIGR00806 rfc RFC reduced fola 21.7 7.1E+02 0.015 27.0 10.1 61 147-210 115-178 (511)
85 PRK03893 putative sialic acid 21.6 8E+02 0.017 24.4 14.1 52 157-210 122-173 (496)
86 COG0428 Predicted divalent hea 21.5 7.6E+02 0.016 24.0 12.4 78 149-230 149-234 (266)
87 PHA02909 hypothetical protein; 21.5 3E+02 0.0066 21.5 5.4 17 329-345 55-71 (72)
88 PF04632 FUSC: Fusaric acid re 21.3 9.9E+02 0.022 25.3 11.7 95 120-226 341-435 (650)
89 PF02659 DUF204: Domain of unk 21.2 3.6E+02 0.0079 20.2 8.4 15 209-223 53-67 (67)
90 PF05977 MFS_3: Transmembrane 20.9 1E+03 0.022 25.3 22.6 94 114-209 74-167 (524)
91 PF05915 DUF872: Eukaryotic pr 20.8 4.9E+02 0.011 22.4 7.2 7 107-113 34-40 (115)
92 PF01810 LysE: LysE type trans 20.2 4.4E+02 0.0094 23.2 7.1 24 330-353 59-82 (191)
93 PF05982 DUF897: Domain of unk 20.1 5.2E+02 0.011 26.5 8.2 40 113-155 170-220 (327)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=3e-72 Score=542.39 Aligned_cols=245 Identities=47% Similarity=0.799 Sum_probs=239.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHH
Q 018460 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (355)
Q Consensus 110 ~~~~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~g 189 (355)
|+.+.|||..||++|+++|++||+++|++.|++.+.||+|+|++|++||+||++||++++++|++|+++|||+|+||++|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccc
Q 018460 190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK 269 (355)
Q Consensus 190 AivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~ 269 (355)
|++||++|+++|++++++|+|++++||+||+|+|+|++++++||+|+++|+.+|+++|++|++++|+|++|+++++|++.
T Consensus 108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~ 187 (302)
T TIGR03718 108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRY 187 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCcee
Confidence 99999999999999999999999999999999999999987777777889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHh
Q 018460 270 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI 349 (355)
Q Consensus 270 aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMi 349 (355)
+||++.++++||++|++||+|||||++|+|+||+++++||+||++++|++|+++++++||||||+|+++++|+|+|+||+
T Consensus 188 ~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkml 267 (302)
T TIGR03718 188 ATPLFLVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKML 267 (302)
T ss_pred cCcHHHHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 018460 350 LDYFV 354 (355)
Q Consensus 350 l~~fg 354 (355)
++++|
T Consensus 268 l~~~~ 272 (302)
T TIGR03718 268 LHATD 272 (302)
T ss_pred HhhcC
Confidence 99765
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-50 Score=381.86 Aligned_cols=202 Identities=27% Similarity=0.411 Sum_probs=184.5
Q ss_pred HHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018460 137 FIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLA 216 (355)
Q Consensus 137 ~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG 216 (355)
+...++.|.+++|++++|++||+||++|+++++++ +|++||+|+++||+.+|+++|+++++.++|+++.++|++++||
T Consensus 10 ~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg 87 (254)
T COG0861 10 WLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFG 87 (254)
T ss_pred HhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44567778899999999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCcc-ccchHHHHHHHHHHHHHHhhcccHHHH
Q 018460 217 GILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAFAVDSIPAV 295 (355)
Q Consensus 217 ~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~-~aTpl~~avi~Iel~DlvFSlDSV~Aa 295 (355)
++|+|+++|++.+++++. .|+.++.. ++++|+++++ +++. ..||+|.++.+||++|++||+|||||+
T Consensus 88 ~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa 155 (254)
T COG0861 88 LYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVFSLDSVIAA 155 (254)
T ss_pred HHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999765433 23334433 6788888877 3333 779999999999999999999999999
Q ss_pred hHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460 296 FGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352 (355)
Q Consensus 296 ~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~ 352 (355)
+|+|+|+++|++|+++|+++||++|+++++++||||+++|+++.+|+|||+||++++
T Consensus 156 ~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 156 VGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998
No 3
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.2e-49 Score=357.77 Aligned_cols=183 Identities=38% Similarity=0.594 Sum_probs=164.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 018460 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (355)
Q Consensus 148 ltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l 227 (355)
+|++++|++||+||++|+++++++ +|+++|+|+++||+.+|+++|++|+++++++++.++|++++||+||+|+|+|++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999997 999999999999999999999999999999998889999999999999999999
Q ss_pred hhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHH
Q 018460 228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307 (355)
Q Consensus 228 ~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~ 307 (355)
++++| +|+ ++...+..++..| ....++|.++.+||++|++||+|||+|++|+|+|++++++
T Consensus 79 ~~~~~-~d~-~~~~~~~~~~~~~-----------------~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~ 139 (183)
T PF03741_consen 79 HEERD-EDP-ENAEVEEEKKFFP-----------------VSKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT 139 (183)
T ss_pred Hhccc-ccc-chhhhhhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 98762 333 3433333322211 1234699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhh
Q 018460 308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD 351 (355)
Q Consensus 308 g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~ 351 (355)
|+++|+++||++|+.+++++||||+++++++.+|+|+|+||++|
T Consensus 140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999975
No 4
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=1.2e-47 Score=356.43 Aligned_cols=173 Identities=29% Similarity=0.450 Sum_probs=157.3
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcc
Q 018460 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (355)
Q Consensus 152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l~~~~ 231 (355)
++|++||+||++|+++++++ +|++||+|+++||++||+++|++|++++++++ +++|++++||+||+|+++|++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~~--LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLASFLI-KFWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred chhHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999996 99999999999999999999999999999999 5679999999999999999999765
Q ss_pred CCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHHHHHH
Q 018460 232 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF 311 (355)
Q Consensus 232 ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~ 311 (355)
++++.+++. .++..+.+|.++.+||++|++||+|||+|++|+|+|++++++|+++
T Consensus 79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~ 133 (215)
T TIGR03716 79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII 133 (215)
T ss_pred ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence 443322211 0111356899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460 312 AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352 (355)
Q Consensus 312 AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~ 352 (355)
|+++||++|+.+++++||||+++|+++.+|+|+|+||++++
T Consensus 134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 134 GILIMRFAATIFVKLLERFPELETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975
No 5
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=7.9e-43 Score=315.19 Aligned_cols=174 Identities=24% Similarity=0.319 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~ 226 (355)
+++++++|.+||+||++|+++++++ +|+++|||++.||+.+|+++|++|+++|.++++ ++|+++.||++|+|+|+|+
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~~--lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAARN--LPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999875 999999999999999999999999999999996 7999999999999999999
Q ss_pred hhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhcC-CchhH
Q 018460 227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV 305 (355)
Q Consensus 227 l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~-d~~IV 305 (355)
+++++++++.++ ...+|+|.++++||++|++||+|||||++|+|+ |.+++
T Consensus 79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li 129 (176)
T TIGR03717 79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL 129 (176)
T ss_pred Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 987654433211 124799999999999999999999999999997 67799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460 306 FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352 (355)
Q Consensus 306 ~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~ 352 (355)
++|.++|++.|++.+..++++++|||+++|+++.+|+|+|+||+++|
T Consensus 130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~d 176 (176)
T TIGR03717 130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVTD 176 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999865
No 6
>PRK14013 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=330.70 Aligned_cols=231 Identities=21% Similarity=0.252 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HH
Q 018460 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF 193 (355)
Q Consensus 115 k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vl 193 (355)
.+.|+||++++.++++.+.++++ .+.....+++.++|++||+||++|+|.+.++ +|++||+|+|+||+++|+ +|
T Consensus 3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~~--m~~~wq~~fl~~Gi~iAvFgm 77 (338)
T PRK14013 3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLKR--MSPKWQKRFLTWGILIAVFGM 77 (338)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999987643 5666678889999999999999999999996 999999999999999998 99
Q ss_pred HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCcchhhHHHHhhhcc
Q 018460 194 RLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI 249 (355)
Q Consensus 194 Riifi~~g~~Ll~~------------------------f~~I~liGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~ 249 (355)
|++|+++++|+.+. .+.+..+||+||++.+.+++.++|+|.+|-. +++|.++|.-
T Consensus 78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g 156 (338)
T PRK14013 78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLG 156 (338)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhc
Confidence 99999999999764 2358899999999999999998888877742 3444444332
Q ss_pred cc---------------ccccCCC-----------------------cee-Ee-cC-CccccchHHHHHHHHHHHHHHhh
Q 018460 250 PV---------------TTYYDGN-----------------------RFF-TN-QD-GMRKATPLLLTVAVIELSDIAFA 288 (355)
Q Consensus 250 pv---------------~~~~~g~-----------------------~f~-~~-~~-g~~~aTpl~~avi~Iel~DlvFS 288 (355)
.+ ....+.+ +++ .. ++ .+...+.-+..++++|++|++||
T Consensus 157 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS 236 (338)
T PRK14013 157 KLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFS 236 (338)
T ss_pred CccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 22 0001100 111 00 01 11234567899999999999999
Q ss_pred cccHHHHhHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhh
Q 018460 289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILD 351 (355)
Q Consensus 289 lDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl--~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~ 351 (355)
+|||||++|+|+|++++++||++|++++|++ |++..+.++||+|||++++++++++|+||+++
T Consensus 237 ~DsV~aafAiT~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~ 301 (338)
T PRK14013 237 FDGVIGAFAITNDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLS 301 (338)
T ss_pred hccchhheeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 99999999999999999999999999999986
No 7
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.97 E-value=1.7e-32 Score=261.81 Aligned_cols=236 Identities=21% Similarity=0.270 Sum_probs=189.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHH---HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHH
Q 018460 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFA---GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA 190 (355)
Q Consensus 114 ~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~flt---l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gA 190 (355)
..+-|+||+..+.+|++.+.|.+|.+|...|..++- +.++|+|||.||++|+|-+.+. +.+.||||.|+|||++|
T Consensus 3 ~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlIA 80 (346)
T COG2899 3 AFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILIA 80 (346)
T ss_pred hHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 356789999999999999999998877766655444 5689999999999999999997 89999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCcchhhHHHHh
Q 018460 191 I-VFRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTC 245 (355)
Q Consensus 191 i-vlRiifi~~g~~Ll~~------------------------f~~I~liGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~ 245 (355)
+ .||++|+++++++-.. .+.|..+||.||++.+.++++|.|+|.+|-+ ++++-+
T Consensus 81 VFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~-~iE~~~ 159 (346)
T COG2899 81 VFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLK-WIERPL 159 (346)
T ss_pred HHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccchhhh-hHHHHH
Confidence 7 8999999999998654 3458899999999999999999777776642 333333
Q ss_pred hhcccc---------------c--cccCCC--ceeE--------------------ecC-C-ccccchHHHHHHHHHHHH
Q 018460 246 QRFIPV---------------T--TYYDGN--RFFT--------------------NQD-G-MRKATPLLLTVAVIELSD 284 (355)
Q Consensus 246 ~k~~pv---------------~--~~~~g~--~f~~--------------------~~~-g-~~~aTpl~~avi~Iel~D 284 (355)
.|+-.. + -..+++ .+.. ..+ . .......+.+++++|+.|
T Consensus 160 arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVLD 239 (346)
T COG2899 160 ARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLD 239 (346)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHHh
Confidence 322221 0 011111 1111 000 0 112245788999999999
Q ss_pred HHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhh
Q 018460 285 IAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352 (355)
Q Consensus 285 lvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl--~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~ 352 (355)
..||+|+|++|||+|+|++|+..|+.++.+.+|++ |-+-.+.+++|.|||||+.+.++..++.|+++-
T Consensus 240 AsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~ 309 (346)
T COG2899 240 ASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLST 309 (346)
T ss_pred hhccccceeeeeeeccCchhheeccchhheeeeeeEEEEEecCcHHHHHHHhcchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 555569999999999999999999999998764
No 8
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=99.94 E-value=9e-28 Score=230.57 Aligned_cols=192 Identities=20% Similarity=0.287 Sum_probs=154.2
Q ss_pred hhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------hhHHHH
Q 018460 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL 213 (355)
Q Consensus 159 vDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~------------------------f~~I~l 213 (355)
.||++|+|-+.+. +.+.|||+.|+|||++|+ +||++|+.+++++.+. .+.+..
T Consensus 1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa 78 (294)
T PF04332_consen 1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA 78 (294)
T ss_pred CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence 5999999999997 889999999999999998 8999999999999764 245788
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcchhhHHHHhhhcccc---------------------ccccCCC--------------
Q 018460 214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPV---------------------TTYYDGN-------------- 258 (355)
Q Consensus 214 iGG~fLl~~a~k~l~~~~ee~d~~~~~i~r~~~k~~pv---------------------~~~~~g~-------------- 258 (355)
+||+||++.+.+.+.++++ .+|- .+++|.+.|.-++ .++....
T Consensus 79 FGG~FLlmvfL~f~f~~~k-~~Wl-~~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~ 156 (294)
T PF04332_consen 79 FGGMFLLMVFLDFFFDEEK-VHWL-RWIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI 156 (294)
T ss_pred HhHHHHHHHHHheeecCCc-ceee-hHHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999998876 6553 2333333332221 1110000
Q ss_pred -----ceeEecCC-----ccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHH--HH
Q 018460 259 -----RFFTNQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS--EG 326 (355)
Q Consensus 259 -----~f~~~~~g-----~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl~~~l~--~l 326 (355)
+++..+++ +.....-+..++++|+.|.+||+|+|++|||+|+|++++.+|+.++.+.+|++.-.+. +.
T Consensus 157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt 236 (294)
T PF04332_consen 157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT 236 (294)
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence 11111111 1234578899999999999999999999999999999999999999999999976666 79
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHhhhhcC
Q 018460 327 MADLEYLQPSIAVVLGFIGCKMILDYFV 354 (355)
Q Consensus 327 l~rfp~L~~~a~~iL~fIGvkMil~~fg 354 (355)
+++|+|||+|+.+.++..|+.|+++.+|
T Consensus 237 L~~Y~YLEhGA~yAIg~La~IMll~~~~ 264 (294)
T PF04332_consen 237 LSEYRYLEHGAHYAIGALAVIMLLSIFG 264 (294)
T ss_pred HHHhHHHhcchHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998874
No 9
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=97.72 E-value=0.0028 Score=58.95 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=64.1
Q ss_pred HhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhcc
Q 018460 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE 231 (355)
Q Consensus 156 sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~~ 231 (355)
.=-..|+-++.-+.+. .++++|+|...-....|.+.=.+|.++|.++++.| +-....||+.|+.+|++++.++.
T Consensus 15 inP~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 15 INPIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred HhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3346788889988986 79999999999999999999999999999999764 45899999999999999998653
No 10
>PRK10995 inner membrane protein; Provisional
Probab=97.62 E-value=0.0072 Score=56.75 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=62.4
Q ss_pred hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~ 230 (355)
==+.|+-+|.-+.+. .++++|+|.-....+.|.+.=+++.+.|..+++.| +.....||++|++.|+++++++
T Consensus 20 nP~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 20 NPLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred chhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345688888888886 79999999999999999988889999999999754 5689999999999999999754
No 11
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.62 E-value=0.0094 Score=55.53 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhchhHHHHH-HHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHH
Q 018460 146 EFFAGYILEQSLSVDNLFVF-VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGIL 219 (355)
Q Consensus 146 ~fltl~lLE~sLSvDNa~Vi-alI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-----~~I~liGG~fL 219 (355)
++++..++-..+|.||--|= +.=.++ .+++. +.++..|+... ++-.+++.+|..+=+.+ .|-.+++++.|
T Consensus 2 ~~~sllllA~alsmDAFav~l~~G~~~--~k~~~-~~~L~ia~~fG-~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL 77 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLGKGLAK--HKIRF-KEALVIALIFG-VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLL 77 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHhhhhh--ccccH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999996542 222222 22222 34444444443 34455666665543222 35677899999
Q ss_pred HHHHHHhhhhc--cCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhH
Q 018460 220 LFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG 297 (355)
Q Consensus 220 l~~a~k~l~~~--~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~a 297 (355)
++.|.+|+++. +||++..+++ +++. + -.....++-+.-|+|+.+..++
T Consensus 78 ~~lG~~mI~e~f~~~~~~~~~~~-----------------------~~~~-----~--~~~~~~~laiatSidal~vG~~ 127 (190)
T COG1971 78 IILGLKMIIEGFKNEEDEFVDPA-----------------------EKHD-----L--NFKELILLAIATSIDALAVGVG 127 (190)
T ss_pred HHHHHHHHHHHhchhhcchhccc-----------------------ccch-----h--hHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999864 2222211111 0110 0 0223445667789999988887
Q ss_pred hcCC-chhHHHHHHH-------HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhhcCC
Q 018460 298 VTRD-PFIVFSSNLF-------AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFVL 355 (355)
Q Consensus 298 iT~d-~~IV~~g~i~-------AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~fg~ 355 (355)
.+.- .-+...+..+ +.+|.-.. ..+.++..+ |-+..+..+|..+|.|++.+.+++
T Consensus 128 ~a~lgv~i~~~av~iG~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~~~ 190 (190)
T COG1971 128 LAFLGVNILLAAVAIGLITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHLSF 190 (190)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhccC
Confidence 7752 2222222222 33333333 344444444 568899999999999999988763
No 12
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=97.54 E-value=0.0085 Score=55.77 Aligned_cols=74 Identities=15% Similarity=0.321 Sum_probs=64.3
Q ss_pred HHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 155 ~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~ 230 (355)
++=-+.|+-++.-+.+. .++++|+|......+.|.+.=++|.+.|.++++.| +-....||+.|+.+|++++..+
T Consensus 17 iinPig~ipvfl~lt~~--~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 17 IINPIGNIPIFISLTEY--YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HhCcchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44456789999999986 79999999999999999988899999999999754 4588999999999999999754
No 13
>PRK10739 putative antibiotic transporter; Provisional
Probab=97.52 E-value=0.013 Score=54.66 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=62.9
Q ss_pred HhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 156 sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~ 230 (355)
+=-+.|+-++..+.+. .++++|+|...-....|.+.=++|.+.|..+++.| +-....||+.|+..|+++++++
T Consensus 15 inPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 15 MDPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HhHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3446788889999986 79999999999888888888889999999999764 4589999999999999999765
No 14
>PRK11469 hypothetical protein; Provisional
Probab=97.39 E-value=0.027 Score=52.04 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh-hHHHHHHHHHHHH
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL----LGTATLQRF-EAVNLVLAGILLF 221 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~----~g~~Ll~~f-~~I~liGG~fLl~ 221 (355)
+++..++=.+||.||..|=...=-+ .++...++.+...+..+. +-.++++ +|.++.+.. ++-..+++..|++
T Consensus 3 ~~~i~llaialsmDaF~v~ia~G~~--~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~ 79 (188)
T PRK11469 3 ITATVLLAFGMSMDAFAASIGKGAT--LHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIF 79 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999997653322211 233333443333333332 2233333 333332211 2345788889999
Q ss_pred HHHHhhhhcc--CCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHHHHHHHHHhhcccHHHHhHhc
Q 018460 222 SSFKLFASEE--DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299 (355)
Q Consensus 222 ~a~k~l~~~~--ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT 299 (355)
.|.+++.+.- +|+++++.. + + .. .....+.=+.-|+|+..+-++.+
T Consensus 80 lG~~mi~e~~~~~~~~~~~~~----------------------~-~-----~~----~~~~l~LaiAtSiDAlavGi~~~ 127 (188)
T PRK11469 80 LGGRMIIEGFRGADDEDEEPR----------------------R-R-----HG----FWLLVTTAIATSLDAMAVGVGLA 127 (188)
T ss_pred HHHHHHHHHHhcccccccccc----------------------c-C-----CC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988641 111111000 0 0 01 11233344567999988876654
Q ss_pred --CC-chh-----HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhhhcC
Q 018460 300 --RD-PFI-----VFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFV 354 (355)
Q Consensus 300 --~d-~~I-----V~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~~fg 354 (355)
+- ++. -.++.++...++.... .+.+...| +.+..+.++|..+|+|++++.++
T Consensus 128 ~~g~~~~~~~~~ig~~s~~~~~~G~~lG~-~~g~~~g~--~a~~lgG~iLI~iGi~il~~h~~ 187 (188)
T PRK11469 128 FLQVNIIATALAIGCATLIMSTLGMMVGR-FIGSIIGK--KAEILGGLVLIGIGVQILWTHFH 187 (188)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC
Confidence 32 221 1223333444444333 33345555 46789999999999999988653
No 15
>PRK11111 hypothetical protein; Provisional
Probab=97.29 E-value=0.027 Score=53.10 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=61.4
Q ss_pred chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 018460 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~~~ 230 (355)
=+.|+-++..+.+. .++++|+|......+.|.+.=.+|.+.|-++++.| +-....||+.|+.+|++|+..+
T Consensus 23 Pig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 23 PVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred cchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688888888886 78999999999999999888889999999999754 4588999999999999999754
No 16
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.021 Score=53.58 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=66.2
Q ss_pred HHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhh
Q 018460 153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFA 228 (355)
Q Consensus 153 LE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f----~~I~liGG~fLl~~a~k~l~ 228 (355)
.=.+=...|+-++..+.+. .|+++|+|+..--...|.+.=.+|.+.|.++++-| +-....||..|.++|++++.
T Consensus 15 f~i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~ 92 (203)
T COG2095 15 FAIIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLF 92 (203)
T ss_pred HHHhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhc
Confidence 3345567899999999996 89999999999999999988899999999999754 34788999999999999998
Q ss_pred hcc
Q 018460 229 SEE 231 (355)
Q Consensus 229 ~~~ 231 (355)
.+.
T Consensus 93 ~~~ 95 (203)
T COG2095 93 GPT 95 (203)
T ss_pred CCc
Confidence 653
No 17
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=97.15 E-value=0.15 Score=46.57 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHH-HHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHH
Q 018460 141 ASKASEFFAGYIL-EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLV 214 (355)
Q Consensus 141 ~~~a~~fltl~lL-E~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~~----I~li 214 (355)
+|.+..|+...++ =.+=+-||+.++..-.++ + ..+--....|+..+...=..+...+. .+++.++| ++++
T Consensus 3 ~~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~-G---~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~ 78 (195)
T PRK10323 3 PTLLSAFWTYTLITAMTPGPNNILALSSATSH-G---FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWA 78 (195)
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443 233388999999887764 2 22233456677777655455554455 55555544 7899
Q ss_pred HHHHHHHHHHHhhhhc
Q 018460 215 LAGILLFSSFKLFASE 230 (355)
Q Consensus 215 GG~fLl~~a~k~l~~~ 230 (355)
|++||+|.|+|+++.+
T Consensus 79 Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 79 GAAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999864
No 18
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.10 E-value=0.006 Score=56.04 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460 144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFS 222 (355)
Q Consensus 144 a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~~I~liGG~fLl~~ 222 (355)
|....+..+.+.+.|+||+....-+.+ +-..+..|...|+ +||...-.+.. ++++++++.+.++++|.|+
T Consensus 106 ~~~v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~~-~l~~~p~l~~~~~~~L~~i 176 (183)
T PF03741_consen 106 WLAVIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLAK-LLERFPYLKYLAAAILGFI 176 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999998887773 4478888998887 78877666555 6789999999999999999
Q ss_pred HHHhhh
Q 018460 223 SFKLFA 228 (355)
Q Consensus 223 a~k~l~ 228 (355)
|.|++.
T Consensus 177 g~~li~ 182 (183)
T PF03741_consen 177 GVKLIL 182 (183)
T ss_pred HHHHhh
Confidence 999975
No 19
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.012 Score=56.83 Aligned_cols=78 Identities=23% Similarity=0.246 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460 144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFS 222 (355)
Q Consensus 144 a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~~I~liGG~fLl~~ 222 (355)
|....+..++|.+.|.||+.-..-+.++ .-++..|...|+ +||...-.+.. ++++++++.+.+.++|+|+
T Consensus 134 ~~ai~~I~i~D~vFSlDSV~Aa~g~~~~--------~~im~~a~i~aI~~m~~aa~~l~~-ll~r~p~l~~~~~~iL~~I 204 (254)
T COG0861 134 WGAIIQIELADLVFSLDSVIAAVGMAGH--------PFVMVTAVIFAILVMRFAAFLLAR-LLERHPTLKYLALVILLFI 204 (254)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHH
Confidence 4445557899999999999988887753 468899999998 78887666555 6789999999999999999
Q ss_pred HHHhhhhc
Q 018460 223 SFKLFASE 230 (355)
Q Consensus 223 a~k~l~~~ 230 (355)
|.|++.++
T Consensus 205 G~kli~~~ 212 (254)
T COG0861 205 GVKLILEG 212 (254)
T ss_pred HHHHHHhh
Confidence 99999865
No 20
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.72 E-value=0.0094 Score=54.51 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcccHHHHhHhcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhh
Q 018460 277 VAVIELSDIAFAVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350 (355)
Q Consensus 277 vi~Iel~DlvFSlDSV~Aa~aiT~d~------~IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil 350 (355)
+.++.+.|++.|+||+....-+|++. -+...|.+.|.. +|...-.+...+=++|++++++..+|.++|.||+.
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~v-lr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~ 80 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAIV-LRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLL 80 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999988888763 266666666654 45554444444444899999999999999999986
Q ss_pred h
Q 018460 351 D 351 (355)
Q Consensus 351 ~ 351 (355)
+
T Consensus 81 ~ 81 (176)
T TIGR03717 81 E 81 (176)
T ss_pred c
Confidence 4
No 21
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=96.70 E-value=0.061 Score=50.95 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460 144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFS 222 (355)
Q Consensus 144 a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~~I~liGG~fLl~~ 222 (355)
|....+..+.|.+.|.||+....-+.+. ...+..|...++ +||..--.+. .++++|+++.+.+.++|.|+
T Consensus 96 ~~av~~I~~~DlvFSlDSV~A~~git~~--------~~ii~~g~~~sIl~lr~~s~~l~-~li~r~p~L~~~~~~iL~~i 166 (215)
T TIGR03716 96 WRTVLKVELMDIAFSVDSILAAVALSGQ--------FWVVFLGGIIGILIMRFAATIFV-KLLERFPELETAAFLLIGWI 166 (215)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhccC--------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3446667899999999999988877543 357888888887 7887766664 47789999999999999999
Q ss_pred HHHhhhhc
Q 018460 223 SFKLFASE 230 (355)
Q Consensus 223 a~k~l~~~ 230 (355)
|.|++.+.
T Consensus 167 g~kLil~~ 174 (215)
T TIGR03716 167 GVKLLLET 174 (215)
T ss_pred HHHHHHHH
Confidence 99999865
No 22
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=96.67 E-value=0.37 Score=42.94 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=43.2
Q ss_pred hchhHHHHHHHHhCcCCCCHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHH-Hh----hhHHHHHHHHHHHHHHHHhhhh
Q 018460 157 LSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTATL-QR----FEAVNLVLAGILLFSSFKLFAS 229 (355)
Q Consensus 157 LSvDNa~VialI~~~f~lP~~~q~raL--~~GI~gAivlRiifi~~g~~Ll-~~----f~~I~liGG~fLl~~a~k~l~~ 229 (355)
-+-+|+.++..-.++ -+++++ ..|...+...=+.....|...+ +. ..++.++||+||+|.|++.+++
T Consensus 7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888876653 233443 3444444444444444444333 32 3458899999999999999986
Q ss_pred cc
Q 018460 230 EE 231 (355)
Q Consensus 230 ~~ 231 (355)
..
T Consensus 81 ~~ 82 (191)
T PF01810_consen 81 KF 82 (191)
T ss_pred cc
Confidence 53
No 23
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=96.49 E-value=0.068 Score=49.81 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=47.8
Q ss_pred hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhhcc
Q 018460 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF--EAVNLVLAGILLFSSFKLFASEE 231 (355)
Q Consensus 157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f--~~I~liGG~fLl~~a~k~l~~~~ 231 (355)
-.+|+.++....|++ .+.+.|+|-..+|=..+...=+..-+++...++.. +|++-+.|+.=++.|+|.+.+.+
T Consensus 4 TniDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 4 TNIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred ecHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999997 45555677777773333322222222222223222 58888899999999999877544
No 24
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=96.39 E-value=0.76 Score=42.61 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=53.3
Q ss_pred HHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh----hhHHHHHHHHHHHHHH
Q 018460 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG-TATLQR----FEAVNLVLAGILLFSS 223 (355)
Q Consensus 149 tl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g-~~Ll~~----f~~I~liGG~fLl~~a 223 (355)
+..++-.+=+=||+.+++.-.++ -..+-...-.|+..+...=.++..+| +.++.. |..++++|++||+|.|
T Consensus 12 ~~~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg 87 (208)
T COG1280 12 AALVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG 87 (208)
T ss_pred HHHHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666778999998887763 23344455556555555555555665 345544 4568999999999999
Q ss_pred HHhhhhc
Q 018460 224 FKLFASE 230 (355)
Q Consensus 224 ~k~l~~~ 230 (355)
+|+++..
T Consensus 88 ~~~~ra~ 94 (208)
T COG1280 88 WKALRAG 94 (208)
T ss_pred HHHHhcc
Confidence 9999865
No 25
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=95.82 E-value=1.6 Score=40.86 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=45.8
Q ss_pred HHHHHHHHhchhHHHH-HHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHHH
Q 018460 149 AGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFK 225 (355)
Q Consensus 149 tl~lLE~sLSvDNa~V-ialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-~-~I~liGG~fLl~~a~k 225 (355)
+..++=.++|.|+..| ++.=.+. ++. .-+.++..|+.-+ +|=.+-..+|..+-+.+ + +-.+++++.|++.|.+
T Consensus 2 ~i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 2 SLLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 3567788999999877 4444443 222 1234455554444 22223333444333322 2 4678999999999999
Q ss_pred hhhhc
Q 018460 226 LFASE 230 (355)
Q Consensus 226 ~l~~~ 230 (355)
++.+.
T Consensus 78 mi~~~ 82 (206)
T TIGR02840 78 IIYNA 82 (206)
T ss_pred HHHHH
Confidence 98753
No 26
>PRK09304 arginine exporter protein; Provisional
Probab=95.74 E-value=1.6 Score=40.09 Aligned_cols=78 Identities=19% Similarity=0.149 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHH
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLF 221 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~~----I~liGG~fLl~ 221 (355)
++.|+.+-..=+-||+.++..-.++ .+......|+..+..+=.....+|. .+++.+++ ++++|++||+|
T Consensus 9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly 82 (207)
T PRK09304 9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW 82 (207)
T ss_pred HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667778899888875542 1233455555555555545444444 45656554 78899999999
Q ss_pred HHHHhhhhc
Q 018460 222 SSFKLFASE 230 (355)
Q Consensus 222 ~a~k~l~~~ 230 (355)
.|+|.++.+
T Consensus 83 Lg~~~~rs~ 91 (207)
T PRK09304 83 YGFGAFKTA 91 (207)
T ss_pred HHHHHHHHh
Confidence 999999864
No 27
>COG2119 Predicted membrane protein [Function unknown]
Probab=95.68 E-value=0.44 Score=44.55 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=108.3
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHh
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKL 226 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~--~I~liGG~fLl~~a~k~ 226 (355)
..+-|+ +|--+.++++... ++|++..+-|+.+|. .|-+.-..+|-+..+-++ +..++.|..-+..|+|+
T Consensus 11 v~laEi---GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~ 82 (190)
T COG2119 11 VALAEI---GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWM 82 (190)
T ss_pred HHHHHh---ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 344454 8999999998873 777899999999997 788888888888886666 78888888777789999
Q ss_pred hhhccCCCCcchhhHHHHhhhccccccccCCCceeEecCCccccchHHHHHHH---HHHHHHHhhcccHHHHhHhc---C
Q 018460 227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAV---IELSDIAFAVDSIPAVFGVT---R 300 (355)
Q Consensus 227 l~~~~ee~d~~~~~i~r~~~k~~pv~~~~~g~~f~~~~~g~~~aTpl~~avi~---Iel~DlvFSlDSV~Aa~aiT---~ 300 (355)
+.++.++++..+.+ .+ ..++..+++. =|+=| -+=+|.++++ +
T Consensus 83 l~edk~~~~e~~~~------------------------~~---~~~f~~tfi~~FlaE~GD-----KTQiATIaLaA~~~ 130 (190)
T COG2119 83 LIEDKEDDEEAQAA------------------------SP---RGVFVTTFITFFLAELGD-----KTQIATIALAADYH 130 (190)
T ss_pred hccccccccccccc------------------------cc---ccHHHHHHHHHHHHHhcc-----HHHHHHHHHhhcCC
Confidence 98764322211100 00 1233333333 34333 2345555554 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHhhhhc
Q 018460 301 DPFIVFSSNLFAILGLRSLFTLISEGMADL---EYLQPSIAVVLGFIGCKMILDYF 353 (355)
Q Consensus 301 d~~IV~~g~i~AIl~LRsl~~~l~~ll~rf---p~L~~~a~~iL~fIGvkMil~~f 353 (355)
.++.|+.|..+|.+.--.+.-+..+.+.+. ..++..+++...+.|..++.+.+
T Consensus 131 ~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~ 186 (190)
T COG2119 131 SPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186 (190)
T ss_pred CceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888877777776666666543 34556666777777777766654
No 28
>PRK10958 leucine export protein LeuE; Provisional
Probab=95.68 E-value=1.8 Score=40.11 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=48.7
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHhh----hHHHHHHHHHHHHHHH
Q 018460 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGT-ATLQRF----EAVNLVLAGILLFSSF 224 (355)
Q Consensus 152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL--~~GI~gAivlRiifi~~g~-~Ll~~f----~~I~liGG~fLl~~a~ 224 (355)
++=.+=+-||+.++..-.++ -+++++ ..|+..+...=+.....|. .+++.+ ..++++|++||+|.|+
T Consensus 19 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~ 92 (212)
T PRK10958 19 FIVLLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGV 92 (212)
T ss_pred HHhcCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34456688999999987763 233444 4455555555555555444 344443 4578999999999999
Q ss_pred Hhhhhc
Q 018460 225 KLFASE 230 (355)
Q Consensus 225 k~l~~~ 230 (355)
|.+++.
T Consensus 93 ~~~~~~ 98 (212)
T PRK10958 93 KMLRAA 98 (212)
T ss_pred HHHHhh
Confidence 999864
No 29
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=95.30 E-value=2 Score=38.25 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=44.1
Q ss_pred chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHHHhhhh
Q 018460 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFAS 229 (355)
Q Consensus 158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~----~I~liGG~fLl~~a~k~l~~ 229 (355)
+-||+.++..-.++ ...+--....|+..+...=+++..+|. .+++..+ .+.++||+||+|.|++.+++
T Consensus 3 GP~~~~~~~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 3 GPNFFVVMQTSLSS----GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred CcchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34788887776653 223333445566666555555555544 4555444 47889999999999999985
No 30
>PRK10229 threonine efflux system; Provisional
Probab=94.79 E-value=3.1 Score=37.85 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=53.6
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 018460 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS 222 (355)
Q Consensus 148 ltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~----~I~liGG~fLl~~ 222 (355)
....++..+=+-||+.++..-.++ ...+--....|+..+...=.++..+|. .+++.++ .+.++|++||+|.
T Consensus 10 ~~~~~~~~sPGP~~~~vi~~~~~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlyl 85 (206)
T PRK10229 10 MVHIVALMSPGPDFFFVSQTAVSR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWM 85 (206)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345566667788999999887764 223333455566666555555555555 4555544 4788999999999
Q ss_pred HHHhhhhc
Q 018460 223 SFKLFASE 230 (355)
Q Consensus 223 a~k~l~~~ 230 (355)
|++.+++.
T Consensus 86 g~~~~~~~ 93 (206)
T PRK10229 86 GYQMLRGA 93 (206)
T ss_pred HHHHHHhc
Confidence 99999854
No 31
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=94.49 E-value=0.21 Score=49.62 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcccHHHHhHhcC--C-c-----hhHHHHHHHHHHHHHHHHH-HHHHHHHhhhcHHHHHHHHHHHHH
Q 018460 275 LTVAVIELSDIAFAVDSIPAVFGVTR--D-P-----FIVFSSNLFAILGLRSLFT-LISEGMADLEYLQPSIAVVLGFIG 345 (355)
Q Consensus 275 ~avi~Iel~DlvFSlDSV~Aa~aiT~--d-~-----~IV~~g~i~AIl~LRsl~~-~l~~ll~rfp~L~~~a~~iL~fIG 345 (355)
....+.-+.|.+.|+||+.....+.. + | -..+.|.+ +++.+|...- .-+.++++|+++++...++|.|+|
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~-gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a 141 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGIL-GALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTG 141 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45667778899999999987766642 1 2 35566654 5557777755 445788899999999999999999
Q ss_pred HHHhhh
Q 018460 346 CKMILD 351 (355)
Q Consensus 346 vkMil~ 351 (355)
+||+.+
T Consensus 142 ~k~~~~ 147 (302)
T TIGR03718 142 IKMLFE 147 (302)
T ss_pred HHHHhh
Confidence 999975
No 32
>TIGR00948 2a75 L-lysine exporter.
Probab=92.55 E-value=0.97 Score=40.27 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=45.9
Q ss_pred chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHHHHhhhhc
Q 018460 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~----f~~I~liGG~fLl~~a~k~l~~~ 230 (355)
+-||++++..-.++ .+--....|+..+...=+++..+|. .+++. +..++++|++||+|.|+|.+++.
T Consensus 6 GP~~~~vi~~~~~~------~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 6 GAQNAFVLRQGIRR------EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cchHHHHHHHHHcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888887763 1233455666666555555555554 45554 44589999999999999999864
No 33
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=90.81 E-value=13 Score=33.93 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=49.6
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHH
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSF 224 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~-~Ll~~f~----~I~liGG~fLl~~a~ 224 (355)
..++-.+=+=||+.++.--.++ ...+--....|+..+...=.+...+|. .+++.++ .++++|++||+|.|+
T Consensus 13 ~~~~~~sPGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~ 88 (205)
T PRK10520 13 SIILSLSPGSGAINTMSTSISH----GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGI 88 (205)
T ss_pred HHHHhcCCchhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677888888876653 222223344466666555555555554 4555544 578999999999999
Q ss_pred Hhhhhc
Q 018460 225 KLFASE 230 (355)
Q Consensus 225 k~l~~~ 230 (355)
|.++.+
T Consensus 89 ~~~~s~ 94 (205)
T PRK10520 89 QQWRAA 94 (205)
T ss_pred HHHhCC
Confidence 999864
No 34
>PRK11469 hypothetical protein; Provisional
Probab=86.53 E-value=15 Score=34.02 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHh----Ch----hh---HHHHHHHHHHHHHhchhHHHH-HHHHhCcCCCCHHhHHHHHHHHHHHH
Q 018460 123 FCVSTAVAFGLGVGFIE----GA----SK---ASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA 190 (355)
Q Consensus 123 ~wv~lal~F~~~i~~~~----g~----~~---a~~fltl~lLE~sLSvDNa~V-ialI~~~f~lP~~~q~raL~~GI~gA 190 (355)
=|++..+++.+..|... +. +. -..+....++=.++|+||.-| ++.-+-. +|. -.-++..|+.-
T Consensus 70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~g--~~~--~~~~~~ig~~s- 144 (188)
T PRK11469 70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQ--VNI--IATALAIGCAT- 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--hhH--HHHHHHHHHHH-
Confidence 37777777776666432 11 11 123456677888999999988 6665543 332 12334444433
Q ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhh
Q 018460 191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS 229 (355)
Q Consensus 191 ivlRiifi~~g~~Ll~~-----f~~I~liGG~fLl~~a~k~l~~ 229 (355)
+++..+|.++=.+ -.|..++||+.|+..|+|.+.+
T Consensus 145 ----~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 145 ----LIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433221 1367889999999999999865
No 35
>COG1279 Lysine efflux permease [General function prediction only]
Probab=84.70 E-value=37 Score=32.28 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH----HHHHHHHHHHH
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG----TATLQRFEA----VNLVLAGILLF 221 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g----~~Ll~~f~~----I~liGG~fLl~ 221 (355)
+.-+=..+++.|+||+---.+ |++++..-+.- .+.=++++..+ ..++++.+| +.+.|.+||+|
T Consensus 12 ~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c-~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~ 82 (202)
T COG1279 12 GASLILPIGAQNAFVLNQGIR--------REYVLPIALLC-AISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY 82 (202)
T ss_pred HHHHHHhccchhHHHHHHHHh--------hccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 344456779999999865333 35555444333 33444444433 345556565 56678889999
Q ss_pred HHHHhhhhc
Q 018460 222 SSFKLFASE 230 (355)
Q Consensus 222 ~a~k~l~~~ 230 (355)
.|++-+++.
T Consensus 83 yg~~a~~~a 91 (202)
T COG1279 83 YGLLALKSA 91 (202)
T ss_pred HHHHHHHhh
Confidence 999998854
No 36
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=81.63 E-value=43 Score=30.82 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=47.7
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~--I~liGG~fLl~~a~ 224 (355)
..+.-..-+.-+....+++.+. .|+++|.++.-+--.+.-+-.++...++.++.+.+.| ..++.++..+..++
T Consensus 92 ~~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 92 RFLLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 3444444567777888888887 6777887777555555556667777888877755544 55555555554444
No 37
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=78.42 E-value=2.9 Score=39.28 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=46.4
Q ss_pred hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCC
Q 018460 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF---RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233 (355)
Q Consensus 157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivl---Riifi~~g~~Ll~~f~~I~liGG~fLl~~a~k~l~~~~ee 233 (355)
-.+|..++....|++ .+ +.|+|-..+|=...... =.++.+.+..++ --+|++-+.|+.=++.|+|.+.++|||
T Consensus 4 TniDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~i-P~~wIlGlLGliPI~lGi~~l~~~~~~ 79 (193)
T TIGR00779 4 TGVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLI-PEKWVLGLLGLIPIYLGIKVAIKGECD 79 (193)
T ss_pred ecHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhHHhHHHHHHHHHHHhccccc
Confidence 358999999999986 55 66666666664333211 111212333232 225898888999999999887765433
No 38
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=74.25 E-value=14 Score=34.81 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA----IVFRLSLILLGTATLQRFEAVNLVLAGILLFS 222 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gA----ivlRiifi~~g~~Ll~~f~~I~liGG~fLl~~ 222 (355)
+.+...+=.+-++|-+++.++.|.+++. +.|++=+..|=... +..-..+.+ +.-.+ .=.|+.-..|+.=++.
T Consensus 5 ~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~-v~~fv-p~e~I~glLGLIPi~L 80 (205)
T COG4300 5 VVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAF-VLNFV-PEEWILGLLGLIPIYL 80 (205)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHH-HHhhC-cHHHHHHHHhHHHHHH
Confidence 4555666778899999999999997543 44444344442222 222222222 22222 1258888889999999
Q ss_pred HHHhhhhccC
Q 018460 223 SFKLFASEED 232 (355)
Q Consensus 223 a~k~l~~~~e 232 (355)
|+|.+..+++
T Consensus 81 Gik~l~~~d~ 90 (205)
T COG4300 81 GIKVLILGDD 90 (205)
T ss_pred hhHHhhcccC
Confidence 9998875543
No 39
>COG1971 Predicted membrane protein [Function unknown]
Probab=69.23 E-value=1e+02 Score=29.05 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHH
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLF 221 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-----~~I~liGG~fLl~ 221 (355)
|....++-++.|+||.-|=.-..- ++-.-+.-+...|+.- .++..+|.++=+++ .+..++||+.|+.
T Consensus 107 ~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~T-----~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~ 178 (190)
T COG1971 107 FKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLIT-----LILSALGAIIGRKLGKFLGKYAEILGGIILIG 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566788889999999877554443 4555566666666432 33344444433222 3678999999999
Q ss_pred HHHHhhhh
Q 018460 222 SSFKLFAS 229 (355)
Q Consensus 222 ~a~k~l~~ 229 (355)
.|.|.+.+
T Consensus 179 ~G~~iL~~ 186 (190)
T COG1971 179 IGVKILLE 186 (190)
T ss_pred HHHHHHHH
Confidence 99998875
No 40
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=67.97 E-value=34 Score=31.95 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHhhcccHHHHhHhc--CC--ch--hHHHHHHHHHHHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHhh
Q 018460 280 IELSDIAFAVDSIPAVFGVT--RD--PF--IVFSSNLFAILGLRSLFTLISEGMADLE---YLQPSIAVVLGFIGCKMIL 350 (355)
Q Consensus 280 Iel~DlvFSlDSV~Aa~aiT--~d--~~--IV~~g~i~AIl~LRsl~~~l~~ll~rfp---~L~~~a~~iL~fIGvkMil 350 (355)
+.+.=+.-|+|+--+.++.. +- ++ .+.+|.+-+ .|-.+...+.+.+.++- +=++.++.+|.++|++|+.
T Consensus 3 i~llaials~Daf~vgi~~G~~~~~~~~~~~l~ig~~~~--~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 3 LLLLAFAVSLDSFGVGIAYGLRKIKIPFLSNLIIAVISG--LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 44455678999777766543 21 12 223333333 23333334455555443 4579999999999999998
Q ss_pred hhc
Q 018460 351 DYF 353 (355)
Q Consensus 351 ~~f 353 (355)
|.+
T Consensus 81 ~~~ 83 (206)
T TIGR02840 81 NAF 83 (206)
T ss_pred HHH
Confidence 764
No 41
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=59.67 E-value=34 Score=27.46 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhhh
Q 018460 176 VMYQNRVLSYGIAGAIVFRLSLILLGTATL--QRFEAVNLVLAGILLFSSFKLFA 228 (355)
Q Consensus 176 ~~~q~raL~~GI~gAivlRiifi~~g~~Ll--~~f~~I~liGG~fLl~~a~k~l~ 228 (355)
+++++|...|.+ .+.+|+.++++++.+. ....|++.++++.|=|+|+-.-.
T Consensus 11 ~d~~~R~r~Y~i--~M~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAVviAN 63 (73)
T PF11298_consen 11 QDQRRRRRRYLI--MMGIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAVVIAN 63 (73)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhheeecc
Confidence 455556666654 5678998888887766 33456788899999999986554
No 42
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=58.56 E-value=2.1e+02 Score=28.92 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=51.1
Q ss_pred cccHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHH---HHHhhh-cHHHHHHHHHHHHHHHHhhhh
Q 018460 289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE---GMADLE-YLQPSIAVVLGFIGCKMILDY 352 (355)
Q Consensus 289 lDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~---ll~rfp-~L~~~a~~iL~fIGvkMil~~ 352 (355)
.+.+.++++++-+..+.+++....+.--|-.+...++ .-.|-+ .++..+..++.+.|..++...
T Consensus 233 ~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~gli~l~~g~~~l~~~ 300 (303)
T COG2215 233 TLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLGGLIGLYFGLHLLLGS 300 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999888888888888888776663 344556 778888888999998887653
No 43
>PRK10489 enterobactin exporter EntS; Provisional
Probab=57.92 E-value=1.9e+02 Score=28.23 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018460 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 201 (355)
Q Consensus 122 ~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g 201 (355)
..+++..+.....+.+...+..+..+....+.=...+.-+....+.+-+. .|+++|-++.-+-.....+-..+-..++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQ--TPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHhhhHhHHHHHH
Q ss_pred HHHHHhhhH---------HHHHHHHHHHH--HHHHhhhhccCCCCcchh
Q 018460 202 TATLQRFEA---------VNLVLAGILLF--SSFKLFASEEDDTDLSDN 239 (355)
Q Consensus 202 ~~Ll~~f~~---------I~liGG~fLl~--~a~k~l~~~~ee~d~~~~ 239 (355)
.++.+.+.. +..+.|+...+ ...|....+|-|+|.+|+
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASDS 417 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCC
No 44
>TIGR00901 2A0125 AmpG-related permease.
Probab=55.75 E-value=1.9e+02 Score=27.43 Aligned_cols=61 Identities=7% Similarity=-0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~ 209 (355)
+....++...-+..+....+++.+. .|+++|.++.-+-..+.-+--++...++.++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334466666777788888888887 688888887766544444555555556666655544
No 45
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=54.14 E-value=2.8e+02 Score=31.09 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=39.6
Q ss_pred cHHHHhHhcCCchhHH-HHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHh
Q 018460 291 SIPAVFGVTRDPFIVF-SSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI 349 (355)
Q Consensus 291 SV~Aa~aiT~d~~IV~-~g~i~AIl~LRsl~~~l~~ll~rfp~L~~~a~~iL~fIGvkMi 349 (355)
++-|++|++-+..+-+ .++....+++-.++.+++++.+++.-+-.++..+++.+-+.+-
T Consensus 196 ~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y 255 (764)
T TIGR02865 196 GAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFY 255 (764)
T ss_pred hHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHH
Confidence 3444555554443322 2234456777788999999999999888888888888665543
No 46
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=53.58 E-value=1.8e+02 Score=26.74 Aligned_cols=67 Identities=12% Similarity=-0.022 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018460 142 SKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (355)
Q Consensus 142 ~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~ 210 (355)
+.+.-+....+.-..-+..+....+++.+. .|+++|.++.-+--.+.-+-.++-..++.++.+.+.|
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334333444455555666777778888886 6888777765444444445556667777777765444
No 47
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=51.91 E-value=2.5e+02 Score=27.78 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHHHHHhhcccHHHHhHhcCC-chh-HHHHHHHHHHHHHHHHHHHH
Q 018460 267 MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRD-PFI-VFSSNLFAILGLRSLFTLIS 324 (355)
Q Consensus 267 ~~~aTpl~~avi~Iel~DlvFSlDSV~Aa~aiT~d-~~I-V~~g~i~AIl~LRsl~~~l~ 324 (355)
++...+.+.+=..=-.+|...|+=...++.+.--+ +++ -+.|.+++++.+......+.
T Consensus 142 kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~ 201 (304)
T COG0053 142 KKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFK 201 (304)
T ss_pred HHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335556666666777999999888888866656 443 36778888887777765554
No 48
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=48.81 E-value=1e+02 Score=32.27 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=12.7
Q ss_pred hhccchhhhhHHHHHHHHHHHHHHHHHH
Q 018460 107 QIEGRESYTSSVKTVAFCVSTAVAFGLG 134 (355)
Q Consensus 107 ~~~~~~~~k~a~~~s~~wv~lal~F~~~ 134 (355)
|.+..++.|+-.....+-..=|++|+++
T Consensus 44 H~r~~~~~~riM~~VilALlPa~l~~iy 71 (413)
T TIGR01937 44 HVRDAVDSKRWMILVVIALFPAMFFGMY 71 (413)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444454444444444444555544
No 49
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=48.31 E-value=2.1e+02 Score=32.96 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHH
Q 018460 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLI 168 (355)
Q Consensus 122 ~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI 168 (355)
.+-+.++++++..++.+.|.+...---.+-++=+.-++||+|+++--
T Consensus 97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~ 143 (886)
T TIGR00920 97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKF 143 (886)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhh
Confidence 56778888888888887777665333333455557799999999644
No 50
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=44.69 E-value=1.3e+02 Score=30.15 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHHHHHHhhhhc
Q 018460 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATL-QRF--EAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 159 vDNa~VialI~~~f~lP~~~q~raL~~GI~gAiv-lRiifi~~g~~Ll-~~f--~~I~liGG~fLl~~a~k~l~~~ 230 (355)
+|--|+++.+... ++-|.-.+-|-.+|+. |-++-..+| |.. +.+ .|--+++|+..+.-|+|++++.
T Consensus 82 GDKTFfiAAlmAm-----r~~R~~Vf~Ga~~AL~lMTiLS~~lG-~aap~lipr~~T~~~~t~LF~iFGlkmL~eg 151 (294)
T KOG2881|consen 82 GDKTFFIAALMAM-----RYPRLTVFSGAMSALALMTILSVLLG-WAAPNLIPRKYTYYLATALFLIFGLKMLKEG 151 (294)
T ss_pred cchHHHHHHHHHh-----hccchhHHHHHHHHHHHHHHHHHHHH-HhhhhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888887763 4556677889999984 444433333 333 222 2566777777777788887754
No 51
>PRK14013 hypothetical protein; Provisional
Probab=44.57 E-value=93 Score=31.83 Aligned_cols=77 Identities=19% Similarity=0.193 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH
Q 018460 145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLILLGT-ATLQRFEAVNLVLAGILLFS 222 (355)
Q Consensus 145 ~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI-~gAivlRiifi~~g~-~Ll~~f~~I~liGG~fLl~~ 222 (355)
..|+.+=++|.+-|+|++...-.+.+ +..+...|. .|++.+|..-..+.- -.+++|+++..-....+.+.
T Consensus 223 ~~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~l 294 (338)
T PRK14013 223 GGFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGAL 294 (338)
T ss_pred HHHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHH
Confidence 44777778999999999875444333 346666665 455689998443333 35679999988888899999
Q ss_pred HHHhhhh
Q 018460 223 SFKLFAS 229 (355)
Q Consensus 223 a~k~l~~ 229 (355)
|+||+.+
T Consensus 295 gvkmll~ 301 (338)
T PRK14013 295 AVIMLLS 301 (338)
T ss_pred HHHHHHh
Confidence 9999985
No 52
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=43.80 E-value=3.4e+02 Score=26.97 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Q 018460 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILE 154 (355)
Q Consensus 122 ~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE 154 (355)
..|..+++.|...+..-.||+..-...+.|++-
T Consensus 12 ~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~ 44 (279)
T PRK10019 12 NAWFFIPSAILLGALHGLEPGHSKTMMAAFIIA 44 (279)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhc
Confidence 678888888888887777888876666666653
No 53
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=43.63 E-value=98 Score=30.94 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=49.0
Q ss_pred HHHHHHhhcccHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-h--hcHHHHHHHHHHHHHHHHhhhhc
Q 018460 281 ELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMAD-L--EYLQPSIAVVLGFIGCKMILDYF 353 (355)
Q Consensus 281 el~DlvFSlDSV~Aa~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~ll~r-f--p~L~~~a~~iL~fIGvkMil~~f 353 (355)
|+=|=.|= |.|..|+-+.-..|+.|..-|...|-.++..+...-.. + .|=.|.+..+..+-|+||+-|+.
T Consensus 80 EiGDKTFf---iAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~ 152 (294)
T KOG2881|consen 80 EIGDKTFF---IAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGW 152 (294)
T ss_pred eccchHHH---HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455552 34556666677889999999999999998888755511 1 13347777777888999998863
No 54
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=41.45 E-value=3.2e+02 Score=25.94 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 018460 210 AVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 210 ~I~liGG~fLl~~a~k~l~~~ 230 (355)
+++.+.+..++|+++.++..+
T Consensus 268 ~~~a~aaG~~lyv~~~ell~~ 288 (317)
T PF02535_consen 268 ILLAFAAGTFLYVAFVELLPE 288 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666677789999888655
No 55
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=40.42 E-value=6e+02 Score=28.84 Aligned_cols=53 Identities=9% Similarity=-0.074 Sum_probs=36.1
Q ss_pred hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 018460 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211 (355)
Q Consensus 157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I 211 (355)
-+.-+....+++-+. +|++++.++.-+=-.+.-+..++...++.+++..+.|-
T Consensus 122 ~a~~~p~~~a~l~~~--~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~ 174 (1140)
T PRK06814 122 SALFGPIKYSILPDH--LNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFV 174 (1140)
T ss_pred HHhhchHHHHhhHhh--cCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 334445666777776 67777777665555555577888888888888776653
No 56
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=40.05 E-value=1.8e+02 Score=32.25 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=16.1
Q ss_pred HHHHHhchhHHHHHHHHhCc
Q 018460 152 ILEQSLSVDNLFVFVLIFKY 171 (355)
Q Consensus 152 lLE~sLSvDNa~VialI~~~ 171 (355)
++=+..++||+|++.-..++
T Consensus 286 FLvlgIGvDd~Fi~~~~~~~ 305 (798)
T PF02460_consen 286 FLVLGIGVDDMFIMIHAWRR 305 (798)
T ss_pred HHHHHHHHhceEEeHHHHhh
Confidence 45556799999999988875
No 57
>COG2119 Predicted membrane protein [Function unknown]
Probab=39.81 E-value=1.3e+02 Score=28.37 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=49.0
Q ss_pred HhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-h--cHHHHHHHHHHHHHHHHhhhhc
Q 018460 295 VFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL-E--YLQPSIAVVLGFIGCKMILDYF 353 (355)
Q Consensus 295 a~aiT~d~~IV~~g~i~AIl~LRsl~~~l~~ll~rf-p--~L~~~a~~iL~fIGvkMil~~f 353 (355)
..|+=..++-|++|...|...|-.++.++....-.+ | ++.+.....-...|+||+.++.
T Consensus 26 llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk 87 (190)
T COG2119 26 LLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDK 87 (190)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 344555688899999999999999999999888777 5 7888887777788999998875
No 58
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=38.80 E-value=3.9e+02 Score=26.25 Aligned_cols=59 Identities=15% Similarity=-0.017 Sum_probs=36.4
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~ 210 (355)
-.+.-...+.......+++.+. .|+++|.++.-+-..+--+-..+...++.++.+.+.|
T Consensus 115 r~l~G~~~g~~~~~~~~~i~~~--~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 115 RACLGLALGGFWAMSASLTMRL--VPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 3444455555666666777776 5777777765443333345677777788877766555
No 59
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=37.73 E-value=86 Score=26.95 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=34.0
Q ss_pred cHHHHhHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHH
Q 018460 291 SIPAVFGVTRDPF----IVFSSNLFAILGLRSLFTLISEGMADLEYLQP 335 (355)
Q Consensus 291 SV~Aa~aiT~d~~----IV~~g~i~AIl~LRsl~~~l~~ll~rfp~L~~ 335 (355)
+||.+.++--|++ +-+.||++.++.+-.+...+.+.++|.++++.
T Consensus 5 aIP~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~ 53 (121)
T PF06695_consen 5 AIPLGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKK 53 (121)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677776666664 44789999999998888888888877777663
No 60
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=37.58 E-value=1.8e+02 Score=30.51 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=12.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHH
Q 018460 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (355)
Q Consensus 109 ~~~~~~k~a~~~s~~wv~lal~F~~~ 134 (355)
+..++.|+-..+.++-..=|++++++
T Consensus 48 r~~~~~~riM~~ViiALlPa~l~~iy 73 (405)
T PRK05349 48 RDAIDLKRIMITVWLALFPAMFFGMY 73 (405)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555554
No 61
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=35.35 E-value=4.6e+02 Score=26.06 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=36.5
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHH
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAG 217 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-~~--I~liGG~ 217 (355)
..+.-..-+.-....-..+.+. .|+++|.++.-+-..+..+.=++...++.++.+.+ .| ..++.|+
T Consensus 138 r~~~G~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~ 206 (465)
T TIGR00894 138 RVIQGLAQGSVSPATHKIIVKW--APPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGI 206 (465)
T ss_pred HHHHHHhcccchhhHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhH
Confidence 3444444555566666677776 57777776655544443444444555566666552 33 4554444
No 62
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=34.61 E-value=4.2e+02 Score=25.43 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=30.8
Q ss_pred HHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 018460 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (355)
Q Consensus 155 ~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~--I~liGG 216 (355)
...+.......+++.+. .|+++|.++.-+--....+.-++...++..+.+.+.| ..++.+
T Consensus 103 ~~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 103 IGAGCCYVVAFAILRDT--LDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred hhhhHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 33444455556666665 5777777765443333333344455555555544443 344433
No 63
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=33.72 E-value=3.8e+02 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhc
Q 018460 208 FEAVNLVLAGILLFSSFKLFASE 230 (355)
Q Consensus 208 f~~I~liGG~fLl~~a~k~l~~~ 230 (355)
..|+.++.|+.|+..|+....+.
T Consensus 68 ~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 68 VGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999999988765
No 64
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=32.28 E-value=6.1e+02 Score=26.57 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 018460 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR---FEAVNLVLAGILL 220 (355)
Q Consensus 155 ~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~---f~~I~liGG~fLl 220 (355)
...+++--.+-.+..++ -|+++|.+....=..+.. .--+.++ +..++.+. ++++.|+.|++-+
T Consensus 140 l~~g~~~pa~~~i~~~W--~P~~Ers~~~ail~~g~q~g~v~~mp-~sg~lc~s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKW--APPNERSTFIAILTAGSQLGTIITMP-VSGLLCESSLGWPSIFYVFGIVGL 206 (466)
T ss_pred HHHhHHHhhhhceeeeE--CCHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHhccCCCCchHHHHHHHHHH
Confidence 34567888888888888 698888776655544442 2333333 34445554 6779998877443
No 65
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=30.45 E-value=5.4e+02 Score=25.33 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=28.2
Q ss_pred chhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018460 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (355)
Q Consensus 158 SvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~ 209 (355)
+.-+....+++.+. .|+++|.++.-+--.+..+.-.+...++.++.+.+.
T Consensus 105 ~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 105 GPLIPLSFSTLLNI--YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred hhHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 33444555666665 588877776544333333444555666667765543
No 66
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=30.38 E-value=2.2e+02 Score=26.92 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=53.9
Q ss_pred hcccHHHHhHhcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHH----hhhcHHHHHHHHHHHHHHHHhhhh
Q 018460 288 AVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMA----DLEYLQPSIAVVLGFIGCKMILDY 352 (355)
Q Consensus 288 SlDSV~Aa~aiT~d~------~IV~~g~i~AIl~LRsl~~~l~~ll~----rfp~L~~~a~~iL~fIGvkMil~~ 352 (355)
.+.|+|--.++|++. -+...+++++...+-..+..=...++ .-+.++.++..+|.++|++|+...
T Consensus 20 P~G~ipvf~slt~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~ 94 (203)
T COG2095 20 PIGNLPVFISLTKGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP 94 (203)
T ss_pred CCchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence 678999999999874 37788888888888887777777777 447899999999999999999754
No 67
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=30.18 E-value=2.7e+02 Score=22.23 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHhHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHH
Q 018460 292 IPAVFGVTR--DPFIVFSSNLFAILGLRSLFTLISEGMADL---EYLQPSIAVVLGFIG 345 (355)
Q Consensus 292 V~Aa~aiT~--d~~IV~~g~i~AIl~LRsl~~~l~~ll~rf---p~L~~~a~~iL~fIG 345 (355)
+..+.+... +++.|+.|...|...+-.++-.+.+.+.+. .++++.+..+....|
T Consensus 20 ~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 20 ATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
No 68
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=30.07 E-value=3.7e+02 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018460 178 YQNRVLSYGIAGAIVFRLSLILL 200 (355)
Q Consensus 178 ~q~raL~~GI~gAivlRiifi~~ 200 (355)
.++|.+.+++++++++=++.+.+
T Consensus 123 ~~N~~l~~~~~~~~~l~~~i~~~ 145 (182)
T PF00689_consen 123 FSNKWLLIAILISIALQILIVYV 145 (182)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHHhcc
Confidence 37899999999988776666665
No 69
>PRK10621 hypothetical protein; Provisional
Probab=28.55 E-value=5.2e+02 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhh
Q 018460 193 FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFAS 229 (355)
Q Consensus 193 lRiifi~~g~~Ll~~f~--~I~liGG~fLl~~a~k~l~~ 229 (355)
..++...+|+++++..+ ++..++|++++..++.++..
T Consensus 86 ~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 86 MTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 44556777888876554 57888899999999888754
No 70
>PRK10995 inner membrane protein; Provisional
Probab=28.30 E-value=2.2e+02 Score=26.71 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=39.4
Q ss_pred cccHHHHhHhcCCc------hhHHHHHHHHHHHHHH----HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhhh
Q 018460 289 VDSIPAVFGVTRDP------FIVFSSNLFAILGLRS----LFTLISEGMADLEYLQPSIAVVLGFIGCKMILD 351 (355)
Q Consensus 289 lDSV~Aa~aiT~d~------~IV~~g~i~AIl~LRs----l~~~l~~ll~rfp~L~~~a~~iL~fIGvkMil~ 351 (355)
+-++|--.++|++. -+..-+.+.+...+-. ...++.-+=-..+.++.++..+|.++|++|+.+
T Consensus 22 ~g~~pif~~lt~~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~ 94 (221)
T PRK10995 22 LTTVALFLGLSGNMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFP 94 (221)
T ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888753 1333333333333333 333343344456899999999999999999854
No 71
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=27.68 E-value=5.6e+02 Score=24.63 Aligned_cols=115 Identities=12% Similarity=-0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018460 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 201 (355)
Q Consensus 122 ~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g 201 (355)
..++...+.....+.....+..+..++...+.=...+.=+....+.+.+. .|+++|-++.-+-.....+...+...+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 281 VAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR--VPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhH---HHHHHHHHHHHHHHHhhhhccCCCCcch
Q 018460 202 TATLQRFEA---VNLVLAGILLFSSFKLFASEEDDTDLSD 238 (355)
Q Consensus 202 ~~Ll~~f~~---I~liGG~fLl~~a~k~l~~~~ee~d~~~ 238 (355)
.++.+.+.| ....++..++......+..++.++|..|
T Consensus 359 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T PRK05122 359 GLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE 398 (399)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
No 72
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=27.67 E-value=2.8e+02 Score=21.24 Aligned_cols=72 Identities=22% Similarity=0.070 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHH
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILL 220 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~--~I~liGG~fLl 220 (355)
+....+.-...+.-+....+.+.+. .|+++|.++.-+--....+...+...++.++.+... +..++.++..+
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADI--YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH--CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence 3334455555555566666677775 688887777655555555666777777777765533 34455444433
No 73
>TIGR00898 2A0119 cation transport protein.
Probab=27.08 E-value=6.5e+02 Score=25.21 Aligned_cols=60 Identities=12% Similarity=-0.034 Sum_probs=31.9
Q ss_pred HHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018460 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAG 217 (355)
Q Consensus 155 ~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~I~liGG~ 217 (355)
...+.-.....+++.+. .|+++|.++..+.-.+..+--++...++ +++..+.|..++.++
T Consensus 192 ~~~~~~~~~~~~~~~e~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~wr~~~~~~~i 251 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEF--LPKKQRAIVGTLIQVFFSLGLVLLPLVA-YFIPDWRWLQLAVSL 251 (505)
T ss_pred hhccchHHHHHHHhhee--cChhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 33444455566677776 6888887766544333333333444443 334345566555554
No 74
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=26.51 E-value=9.5e+02 Score=26.96 Aligned_cols=54 Identities=17% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018460 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (355)
Q Consensus 152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~ 207 (355)
+.=...++.+....+++.+. .|+++|.++.-+--.+..+.-++-..++.++.+.
T Consensus 112 l~G~~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 112 LLGAQSAIYSPAKYGIIPEL--VGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHhhchHHHhhhHHh--cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344556666667777776 6777777766554444445556666667766654
No 75
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=25.91 E-value=1.7e+02 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHhhh
Q 018460 326 GMADLEYLQPSIAVVLGFIGCKMILD 351 (355)
Q Consensus 326 ll~rfp~L~~~a~~iL~fIGvkMil~ 351 (355)
.=.-|..+|++++..|.|+|.||+-.
T Consensus 68 ~~~~f~~lk~~GaaYL~ylg~~~~ra 93 (208)
T COG1280 68 SPALFTVLKLAGAAYLLYLGWKALRA 93 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445678999999999999999864
No 76
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=25.32 E-value=6.1e+02 Score=24.34 Aligned_cols=50 Identities=18% Similarity=0.014 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018460 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (355)
Q Consensus 159 vDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~ 210 (355)
..+.....+.-+. .|++++.++.-+.-.+..+...+-..++.++.+...|
T Consensus 112 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 161 (394)
T PRK11652 112 VGGVMARTLPRDL--YEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW 161 (394)
T ss_pred HHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 3344444444443 4667777766555556666666666777777655443
No 77
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=24.87 E-value=2.9e+02 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHhh----hcHHHHHHHHHHHHHHHHhh
Q 018460 323 ISEGMADL----EYLQPSIAVVLGFIGCKMIL 350 (355)
Q Consensus 323 l~~ll~rf----p~L~~~a~~iL~fIGvkMil 350 (355)
+..+++.+ ..+++.++..|.|.|.++.-
T Consensus 43 l~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 43 LAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 45677788889999988875
No 78
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=24.44 E-value=1.9e+02 Score=29.15 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018460 209 EAVNLVLAGILLFSSFK 225 (355)
Q Consensus 209 ~~I~liGG~fLl~~a~k 225 (355)
.+++.+||+||.|=|..
T Consensus 88 tplLmlGG~yLcfEGaE 104 (295)
T PF05661_consen 88 TPLLMLGGAYLCFEGAE 104 (295)
T ss_pred HHHHHHhHHHHHHhHHH
Confidence 45789999999999974
No 79
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=23.82 E-value=4.6e+02 Score=28.32 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=14.8
Q ss_pred hhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 018460 104 AERQIEGRESYTSSVKTVAFCVSTAVAFGLG 134 (355)
Q Consensus 104 ~~~~~~~~~~~k~a~~~s~~wv~lal~F~~~ 134 (355)
.+.|.+...+.|+-..+..+-..=|++++++
T Consensus 41 ~~PHird~~~vkr~M~~VvlALlPail~~i~ 71 (503)
T PRK01024 41 SPPFIRDAVDVKRWMMLVVIALFPAIFVAIW 71 (503)
T ss_pred CCCcccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555444444444444555544
No 80
>PHA00726 hypothetical protein
Probab=23.54 E-value=1.2e+02 Score=25.32 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHhchhHHHHH-HHHhCcCCCCHHhHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHH
Q 018460 153 LEQSLSVDNLFVF-VLIFKYFKVPVMYQNR----VLSYG--IAGAIVFRLSLILLGTATLQRFEAVNLVLA----GILLF 221 (355)
Q Consensus 153 LE~sLSvDNa~Vi-alI~~~f~lP~~~q~r----aL~~G--I~gAivlRiifi~~g~~Ll~~f~~I~liGG----~fLl~ 221 (355)
-|+.|+.|-.+.+ ++.|++ |+.++.| -+.+| +.++ .+..++.+-+..--+.+-|+-| +|+.|
T Consensus 9 aei~l~fD~i~l~~sLLFRK---pK~k~~~~~~~~r~iGyYlVis----sv~aL~vsH~~~Y~s~~~Yf~GL~ldaf~FY 81 (89)
T PHA00726 9 AEIVLVFDTIMLTTALLFRK---PKPKKVKSTLNHRSIGYYLVIS----SVLALIVSHFVSYASLIDYFMGLSLDSLMFY 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCCchhhcCCCCcceeeeeHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5899999998765 577776 5444432 22222 2222 1122222222212234555555 46788
Q ss_pred HHHHhh
Q 018460 222 SSFKLF 227 (355)
Q Consensus 222 ~a~k~l 227 (355)
+|.+++
T Consensus 82 iGlr~l 87 (89)
T PHA00726 82 IGLRCL 87 (89)
T ss_pred Hhhhhc
Confidence 888765
No 81
>PRK10229 threonine efflux system; Provisional
Probab=22.91 E-value=2.6e+02 Score=25.28 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=15.3
Q ss_pred hhcHHHHHHHHHHHHHHHHhh
Q 018460 330 LEYLQPSIAVVLGFIGCKMIL 350 (355)
Q Consensus 330 fp~L~~~a~~iL~fIGvkMil 350 (355)
+..+++++++.|.|.|.+++-
T Consensus 71 ~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 71 HTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888887765
No 82
>PRK03545 putative arabinose transporter; Provisional
Probab=22.88 E-value=6.9e+02 Score=24.07 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHH
Q 018460 164 VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAG 217 (355)
Q Consensus 164 VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~--I~liGG~ 217 (355)
..+++.+. .|+++|.++.-+=-.+.-+.-.+...++..+.+.+.| ...+.++
T Consensus 118 ~~~~i~~~--~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 118 TASLAIRV--APAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred HHHHHHHh--CChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 34555654 5777766654432222234445556666666665444 4444443
No 83
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=22.13 E-value=5.3e+02 Score=22.42 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=17.1
Q ss_pred HhchhHHHHHHHHhCcCCC-CHHhHHHHHHHHHHHHHH
Q 018460 156 SLSVDNLFVFVLIFKYFKV-PVMYQNRVLSYGIAGAIV 192 (355)
Q Consensus 156 sLSvDNa~VialI~~~f~l-P~~~q~raL~~GI~gAiv 192 (355)
.+.+=.++|=..-|=+.+= ++++=.-.++.|++.|+.
T Consensus 62 ~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va~~ 99 (110)
T TIGR02908 62 LLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVTML 99 (110)
T ss_pred HHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHHHH
Confidence 3444444554444544220 233333356666666653
No 84
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=21.75 E-value=7.1e+02 Score=26.97 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhchhHHHHH---HHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018460 147 FFAGYILEQSLSVDNLFVF---VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~Vi---alI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~ 210 (355)
+....+++..+++=.+..+ ..+.++ +|+++|.|+--+--.+..+-.++-..++.+ +..+.|
T Consensus 115 l~~L~i~R~llGvaEA~~~A~~syI~~W--fP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gW 178 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARIAYSSYIFSL--VPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGW 178 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 5566777777776665554 355565 799999998877777777888888887777 445555
No 85
>PRK03893 putative sialic acid transporter; Provisional
Probab=21.64 E-value=8e+02 Score=24.36 Aligned_cols=52 Identities=8% Similarity=0.021 Sum_probs=30.0
Q ss_pred hchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018460 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (355)
Q Consensus 157 LSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~ 210 (355)
.+.-.....+++.+. .|+++|.++.-+-..+.-+...+-..++.++.+.+.|
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 122 MAGEYGSSATYVIES--WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 344445555666676 6888887765444444445555556666666654433
No 86
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=21.46 E-value=7.6e+02 Score=23.99 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=49.8
Q ss_pred HHHHHHHHhchhHHH---HHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 018460 149 AGYILEQSLSVDNLF---VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL 220 (355)
Q Consensus 149 tl~lLE~sLSvDNa~---VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f-----~~I~liGG~fLl 220 (355)
.+..+.+..++.|+. ..+.-... -..-|.|++.++.+.++.- .+...++.+++..+ ++.+.+.+..++
T Consensus 149 ~gi~~alaI~ihnipEG~av~~pL~~---~~~s~~~~l~~~~lsg~~~-~lgavig~~~~~~~~~~~l~~~la~aaG~mv 224 (266)
T COG0428 149 LGIALALAIAIHNIPEGLAVALPLAG---AGRSRLKALLVAVLSGLAE-PLGAVIGAYLLGISSPLVLPFALAFAAGAMV 224 (266)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHh---cCCchHHHHHHHHHHHhHH-HHHHHHHHHHHhhchHHHHHHHHHHHhhcch
Confidence 567777888888862 33333322 1244678888888777532 23344444554433 367777888999
Q ss_pred HHHHHhhhhc
Q 018460 221 FSSFKLFASE 230 (355)
Q Consensus 221 ~~a~k~l~~~ 230 (355)
|..++++..+
T Consensus 225 ~v~~~eliPe 234 (266)
T COG0428 225 YVVVDELLPE 234 (266)
T ss_pred hhhHHHHhhH
Confidence 9999998865
No 87
>PHA02909 hypothetical protein; Provisional
Probab=21.45 E-value=3e+02 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=8.6
Q ss_pred hhhcHHHHHHHHHHHHH
Q 018460 329 DLEYLQPSIAVVLGFIG 345 (355)
Q Consensus 329 rfp~L~~~a~~iL~fIG 345 (355)
.|.|+.....++|.|.|
T Consensus 55 syvyiaiiislillffg 71 (72)
T PHA02909 55 SYVYIAIIISLILLFFG 71 (72)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34555555555555543
No 88
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.26 E-value=9.9e+02 Score=25.29 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 018460 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL 199 (355)
Q Consensus 120 ~s~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~ 199 (355)
.+.+=..++++.+..+|...|...+...... +.|++.+++...=|...- +-.+.|.+.+.++=++..+
T Consensus 341 ~~alra~la~~~~~l~Wi~t~W~~G~~~~~~-----------~~v~~~lfa~~~~P~~~~-~~~~~G~l~~~~~a~~~~~ 408 (650)
T PF04632_consen 341 RNALRAFLAILIAGLFWIATGWPSGATAVMM-----------AAVVSSLFATLDNPAPAL-RLFLIGALLGAVLAFLYLF 408 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHHHHcCCcChHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777776665333332 334555666544344333 4444555555444444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 018460 200 LGTATLQRFEAVNLVLAGILLFSSFKL 226 (355)
Q Consensus 200 ~g~~Ll~~f~~I~liGG~fLl~~a~k~ 226 (355)
+.---++.|+.+.++.+.+++..++.+
T Consensus 409 ~vlP~~~~f~~L~l~l~~~l~~~~~~~ 435 (650)
T PF04632_consen 409 FVLPHLDGFPLLALVLAPFLFLGGLLM 435 (650)
T ss_pred HhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 333334456677777777777777654
No 89
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=21.15 E-value=3.6e+02 Score=20.19 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHH
Q 018460 209 EAVNLVLAGILLFSS 223 (355)
Q Consensus 209 ~~I~liGG~fLl~~a 223 (355)
++..+++|+.|+..|
T Consensus 53 ~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 53 SYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHC
Confidence 357788898888753
No 90
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=20.90 E-value=1e+03 Score=25.29 Aligned_cols=94 Identities=12% Similarity=-0.044 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHH
Q 018460 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (355)
Q Consensus 114 ~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivl 193 (355)
.|+-...+-++.++..+.-.+..+......|.-+....++-..-+..|--.-+++=+- +|+++-.++.-+.-..--+.
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l--V~~~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL--VPKEDLPAANALNSISFNIA 151 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHHHH
Confidence 3444444444443322222222233334555555556667777777777777887775 89888888877766666689
Q ss_pred HHHHHHHHHHHHHhhh
Q 018460 194 RLSLILLGTATLQRFE 209 (355)
Q Consensus 194 Riifi~~g~~Ll~~f~ 209 (355)
|++-+.+|..++..+.
T Consensus 152 r~iGPalgG~Lva~~G 167 (524)
T PF05977_consen 152 RIIGPALGGILVAFFG 167 (524)
T ss_pred HhccchHHHHHHHHHH
Confidence 9999999998886543
No 91
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.80 E-value=4.9e+02 Score=22.45 Aligned_cols=7 Identities=0% Similarity=-0.144 Sum_probs=3.7
Q ss_pred hhccchh
Q 018460 107 QIEGRES 113 (355)
Q Consensus 107 ~~~~~~~ 113 (355)
+|+.|++
T Consensus 34 ~P~~k~p 40 (115)
T PF05915_consen 34 HPKVKIP 40 (115)
T ss_pred hhhhHHH
Confidence 5555554
No 92
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=20.24 E-value=4.4e+02 Score=23.23 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.5
Q ss_pred hhcHHHHHHHHHHHHHHHHhhhhc
Q 018460 330 LEYLQPSIAVVLGFIGCKMILDYF 353 (355)
Q Consensus 330 fp~L~~~a~~iL~fIGvkMil~~f 353 (355)
...++..++..|.++|.+++-+..
T Consensus 59 ~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 59 FMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 455778888899999999886543
No 93
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=20.05 E-value=5.2e+02 Score=26.46 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhChhhHH-----------HHHHHHHHHH
Q 018460 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKAS-----------EFFAGYILEQ 155 (355)
Q Consensus 113 ~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~-----------~fltl~lLE~ 155 (355)
-.+|++........ +-|..++|..|++.+- ..++++++|.
T Consensus 170 ~l~E~l~~~sv~LL---lGgliIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeM 220 (327)
T PF05982_consen 170 LLHESLTNKSVVLL---LGGLIIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEM 220 (327)
T ss_pred HHHHHHcCchHHHH---HHHHHHhheeCccchhhccchhhccHHHHHHHHHHHh
Confidence 34555554333322 2234566766765432 2566788885
Done!